Query 009053
Match_columns 545
No_of_seqs 437 out of 4317
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 17:45:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009053.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009053hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.4E-32 1.2E-36 305.9 18.9 333 17-351 292-714 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.3E-31 7.7E-36 299.2 20.7 326 10-337 309-723 (768)
3 4eco_A Uncharacterized protein 100.0 9.8E-31 3.4E-35 287.7 24.2 333 12-355 199-601 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 3.1E-30 1.1E-34 289.8 28.4 332 12-355 441-841 (876)
5 3t6q_A CD180 antigen; protein- 100.0 1.1E-29 3.8E-34 277.9 31.9 344 6-351 44-459 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 6.1E-30 2.1E-34 280.1 27.9 196 129-328 302-507 (606)
7 4eco_A Uncharacterized protein 100.0 1.2E-30 4.3E-35 286.9 22.5 314 11-331 239-600 (636)
8 4ecn_A Leucine-rich repeat pro 100.0 5.8E-30 2E-34 287.6 28.2 310 15-332 487-841 (876)
9 3vq2_A TLR4, TOLL-like recepto 100.0 3.8E-29 1.3E-33 273.7 29.4 340 8-353 45-509 (606)
10 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-29 5.9E-34 273.1 23.7 336 8-351 39-483 (549)
11 3t6q_A CD180 antigen; protein- 100.0 2.9E-28 9.9E-33 266.7 30.8 342 7-351 69-510 (606)
12 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-28 6.2E-33 263.4 26.1 341 6-355 32-482 (520)
13 4fmz_A Internalin; leucine ric 100.0 9.1E-28 3.1E-32 244.3 29.0 303 13-329 38-344 (347)
14 3v47_A TOLL-like receptor 5B a 100.0 3.6E-28 1.2E-32 256.5 24.3 330 19-353 30-407 (455)
15 3o6n_A APL1; leucine-rich repe 100.0 7.5E-28 2.6E-32 249.1 26.1 300 17-328 43-349 (390)
16 3v47_A TOLL-like receptor 5B a 100.0 4.6E-28 1.6E-32 255.7 24.5 326 6-335 41-412 (455)
17 1o6v_A Internalin A; bacterial 100.0 4E-27 1.4E-31 249.5 30.0 317 17-352 44-364 (466)
18 2z7x_B TOLL-like receptor 1, v 100.0 2E-27 6.7E-32 255.3 26.5 322 19-351 21-454 (520)
19 3j0a_A TOLL-like receptor 5; m 100.0 7.1E-27 2.4E-31 265.2 32.4 310 9-326 38-409 (844)
20 2z63_A TOLL-like receptor 4, v 100.0 7.6E-28 2.6E-32 261.2 23.2 136 8-145 41-188 (570)
21 2z63_A TOLL-like receptor 4, v 100.0 2.8E-27 9.7E-32 256.7 27.3 339 6-352 63-529 (570)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.6E-27 1.2E-31 255.9 27.3 317 6-331 63-510 (562)
23 4fmz_A Internalin; leucine ric 100.0 6.7E-27 2.3E-31 237.9 26.9 281 14-309 61-345 (347)
24 3oja_B Anopheles plasmodium-re 100.0 3E-27 1E-31 258.2 25.8 301 17-329 49-356 (597)
25 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-27 5.1E-32 257.9 21.8 325 19-351 26-441 (549)
26 1o6v_A Internalin A; bacterial 100.0 1.9E-26 6.4E-31 244.4 29.6 319 14-351 63-385 (466)
27 3o6n_A APL1; leucine-rich repe 100.0 5.8E-27 2E-31 242.4 25.1 289 7-310 57-352 (390)
28 2id5_A Lingo-1, leucine rich r 100.0 2.1E-26 7.2E-31 244.6 29.3 302 22-330 14-332 (477)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.5E-26 5E-31 251.0 26.6 324 19-354 52-510 (562)
30 3j0a_A TOLL-like receptor 5; m 99.9 1.4E-25 4.8E-30 254.6 34.5 314 17-336 22-398 (844)
31 3bz5_A Internalin-J, INLJ; leu 99.9 2.2E-26 7.6E-31 242.8 26.0 307 12-355 35-342 (457)
32 2id5_A Lingo-1, leucine rich r 99.9 1.7E-26 5.7E-31 245.4 24.8 288 19-310 32-333 (477)
33 3oja_B Anopheles plasmodium-re 99.9 2.9E-26 9.8E-31 250.5 24.6 290 7-311 63-359 (597)
34 1ziw_A TOLL-like receptor 3; i 99.9 1.5E-25 5.3E-30 248.5 30.7 320 8-329 38-441 (680)
35 1ziw_A TOLL-like receptor 3; i 99.9 1.9E-25 6.4E-30 247.8 28.3 339 10-353 237-621 (680)
36 1xku_A Decorin; proteoglycan, 99.9 5.5E-25 1.9E-29 222.3 27.1 277 45-328 32-329 (330)
37 2ft3_A Biglycan; proteoglycan, 99.9 3.9E-25 1.3E-29 223.6 24.5 237 20-289 34-279 (332)
38 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-24 4.2E-29 229.4 28.6 276 14-309 59-351 (457)
39 1xku_A Decorin; proteoglycan, 99.9 1.3E-24 4.5E-29 219.5 26.3 283 18-308 30-330 (330)
40 1jl5_A Outer protein YOPM; leu 99.9 4.5E-24 1.5E-28 225.0 30.6 286 12-328 27-327 (454)
41 1jl5_A Outer protein YOPM; leu 99.9 3.5E-24 1.2E-28 225.8 29.7 287 21-337 73-378 (454)
42 2ft3_A Biglycan; proteoglycan, 99.9 1.3E-24 4.3E-29 219.9 21.1 255 45-331 34-307 (332)
43 1ogq_A PGIP-2, polygalacturona 99.9 1.6E-25 5.6E-30 224.5 13.1 248 64-335 50-308 (313)
44 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-25 4.8E-30 225.0 11.9 246 44-314 50-308 (313)
45 4fcg_A Uncharacterized protein 99.9 1.3E-24 4.4E-29 219.5 18.9 231 62-307 79-311 (328)
46 4g8a_A TOLL-like receptor 4; l 99.9 1.1E-23 3.8E-28 230.9 26.8 343 6-352 63-578 (635)
47 4fcg_A Uncharacterized protein 99.9 5.5E-24 1.9E-28 214.8 20.1 227 85-327 79-310 (328)
48 4g8a_A TOLL-like receptor 4; l 99.9 1.1E-22 3.6E-27 223.1 27.8 329 19-352 52-553 (635)
49 3g06_A SSPH2 (leucine-rich rep 99.9 4.1E-22 1.4E-26 216.8 28.9 264 18-315 39-302 (622)
50 2z80_A TOLL-like receptor 2, v 99.9 1.2E-22 4.2E-27 207.0 17.2 261 45-330 32-313 (353)
51 2z66_A Variable lymphocyte rec 99.9 1.3E-22 4.4E-27 202.6 15.0 238 48-309 11-260 (306)
52 3zyi_A Leucine-rich repeat-con 99.9 1.7E-21 5.9E-26 205.4 23.9 240 45-308 55-301 (452)
53 3g06_A SSPH2 (leucine-rich rep 99.9 7.1E-21 2.4E-25 207.1 29.1 230 45-307 41-271 (622)
54 1ozn_A Reticulon 4 receptor; N 99.9 2.8E-22 9.7E-27 198.0 15.7 215 48-284 15-236 (285)
55 3zyj_A Leucine-rich repeat-con 99.9 1.7E-21 5.9E-26 204.6 22.6 240 45-308 44-290 (440)
56 1ozn_A Reticulon 4 receptor; N 99.9 6.5E-22 2.2E-26 195.4 17.7 222 66-312 13-240 (285)
57 2z80_A TOLL-like receptor 2, v 99.9 1E-21 3.6E-26 200.1 18.6 269 17-310 29-314 (353)
58 2z66_A Variable lymphocyte rec 99.9 2.1E-21 7.3E-26 193.7 19.2 237 67-329 10-259 (306)
59 3zyj_A Leucine-rich repeat-con 99.9 8.4E-21 2.9E-25 199.4 24.5 238 20-284 44-290 (440)
60 1z7x_W Ribonuclease inhibitor; 99.9 2.3E-24 7.8E-29 227.7 -3.3 129 15-145 24-181 (461)
61 3zyi_A Leucine-rich repeat-con 99.9 1.3E-20 4.4E-25 198.7 24.1 236 21-283 56-300 (452)
62 1z7x_W Ribonuclease inhibitor; 99.9 3.3E-23 1.1E-27 218.8 1.9 314 12-328 49-437 (461)
63 3o53_A Protein LRIM1, AGAP0063 99.8 4.8E-22 1.6E-26 199.6 6.8 216 62-310 32-250 (317)
64 1wwl_A Monocyte differentiatio 99.8 6.1E-22 2.1E-26 198.4 6.7 240 45-309 44-308 (312)
65 3o53_A Protein LRIM1, AGAP0063 99.8 1E-21 3.4E-26 197.2 7.2 238 11-258 26-270 (317)
66 3oja_A Leucine-rich immune mol 99.8 4.3E-21 1.5E-25 204.1 10.2 214 64-310 34-250 (487)
67 2z62_A TOLL-like receptor 4, v 99.8 3.4E-19 1.2E-23 175.0 18.9 214 71-309 14-236 (276)
68 3oja_A Leucine-rich immune mol 99.8 2.6E-20 8.7E-25 198.1 11.0 228 20-257 35-269 (487)
69 1wwl_A Monocyte differentiatio 99.8 4.1E-21 1.4E-25 192.3 2.7 243 62-329 41-307 (312)
70 1p9a_G Platelet glycoprotein I 99.8 2.3E-18 8E-23 170.4 20.6 200 83-308 6-206 (290)
71 4ay9_X Follicle-stimulating ho 99.8 1.5E-18 5.3E-23 176.5 19.7 233 47-307 12-256 (350)
72 2ast_B S-phase kinase-associat 99.8 1.7E-20 5.9E-25 189.5 3.6 224 63-307 46-282 (336)
73 3rfs_A Internalin B, repeat mo 99.8 2.6E-19 8.9E-24 175.6 11.3 117 198-321 129-246 (272)
74 2z62_A TOLL-like receptor 4, v 99.8 4.3E-18 1.5E-22 167.1 19.5 211 50-283 13-234 (276)
75 2ast_B S-phase kinase-associat 99.8 3.4E-20 1.2E-24 187.3 3.2 252 45-318 48-314 (336)
76 3ogk_B Coronatine-insensitive 99.8 2.9E-20 1E-24 202.5 2.7 330 20-356 139-527 (592)
77 2xwt_C Thyrotropin receptor; s 99.8 6.2E-18 2.1E-22 162.3 18.2 205 76-329 23-237 (239)
78 2xwt_C Thyrotropin receptor; s 99.8 2.9E-18 1E-22 164.6 15.8 204 56-283 23-236 (239)
79 2o6q_A Variable lymphocyte rec 99.8 3.1E-17 1.1E-21 160.5 21.9 194 65-284 17-216 (270)
80 3ogk_B Coronatine-insensitive 99.8 1.7E-19 5.9E-24 196.4 3.9 312 16-333 161-527 (592)
81 4glp_A Monocyte differentiatio 99.8 6.2E-18 2.1E-22 169.0 14.6 200 87-310 91-307 (310)
82 2p1m_B Transport inhibitor res 99.8 1.6E-19 5.5E-24 196.6 3.2 132 225-359 371-523 (594)
83 1h6u_A Internalin H; cell adhe 99.8 1.7E-17 5.9E-22 165.6 17.6 197 61-291 38-234 (308)
84 2o6q_A Variable lymphocyte rec 99.8 8.3E-17 2.9E-21 157.4 22.1 194 88-308 17-216 (270)
85 4glp_A Monocyte differentiatio 99.7 3E-18 1E-22 171.3 11.6 213 45-283 65-304 (310)
86 1h6u_A Internalin H; cell adhe 99.7 1.9E-17 6.5E-22 165.3 16.9 209 66-309 21-229 (308)
87 3rfs_A Internalin B, repeat mo 99.7 1.4E-17 4.8E-22 163.2 15.4 198 45-273 42-246 (272)
88 1p9a_G Platelet glycoprotein I 99.7 9.7E-17 3.3E-21 158.7 20.5 196 15-239 6-208 (290)
89 2ca6_A RAN GTPase-activating p 99.7 3.1E-19 1.1E-23 184.1 1.0 130 181-311 161-317 (386)
90 2p1m_B Transport inhibitor res 99.7 6.2E-20 2.1E-24 199.9 -7.5 310 13-330 99-518 (594)
91 2ca6_A RAN GTPase-activating p 99.7 3.9E-19 1.3E-23 183.3 -2.9 225 62-287 30-316 (386)
92 4ay9_X Follicle-stimulating ho 99.7 7.4E-16 2.5E-20 156.6 21.1 221 67-335 12-240 (350)
93 3m19_A Variable lymphocyte rec 99.7 1.3E-15 4.6E-20 147.1 18.8 174 64-283 14-189 (251)
94 3goz_A Leucine-rich repeat-con 99.7 3.6E-18 1.2E-22 174.6 -0.8 239 48-309 2-296 (362)
95 3cvr_A Invasion plasmid antige 99.7 1.4E-15 4.6E-20 163.6 18.8 180 88-314 60-247 (571)
96 3cvr_A Invasion plasmid antige 99.7 6.2E-16 2.1E-20 166.3 15.8 192 14-248 49-252 (571)
97 3m19_A Variable lymphocyte rec 99.7 2.8E-15 9.4E-20 144.9 18.9 169 159-329 16-190 (251)
98 3goz_A Leucine-rich repeat-con 99.6 2.5E-17 8.5E-22 168.3 2.5 241 23-287 2-297 (362)
99 4ezg_A Putative uncharacterize 99.6 3.9E-15 1.3E-19 138.3 11.8 152 60-237 40-192 (197)
100 1h6t_A Internalin B; cell adhe 99.6 1.4E-14 4.6E-19 143.3 15.8 87 198-290 130-216 (291)
101 1h6t_A Internalin B; cell adhe 99.6 1.3E-14 4.5E-19 143.4 14.8 171 106-309 42-212 (291)
102 2o6s_A Variable lymphocyte rec 99.6 2.2E-14 7.7E-19 134.3 15.4 153 181-338 30-185 (208)
103 1m9s_A Internalin B; cell inva 99.6 7E-15 2.4E-19 159.6 13.5 174 61-266 40-213 (605)
104 2v70_A SLIT-2, SLIT homolog 2 99.6 3.3E-14 1.1E-18 134.6 16.2 148 160-309 14-165 (220)
105 4ezg_A Putative uncharacterize 99.6 1.3E-14 4.4E-19 134.8 12.4 151 131-308 41-192 (197)
106 3e6j_A Variable lymphocyte rec 99.6 5.8E-14 2E-18 133.7 15.9 122 183-307 23-145 (229)
107 1dce_A Protein (RAB geranylger 99.6 1.8E-17 6.3E-22 178.8 -9.6 187 106-312 345-548 (567)
108 1dce_A Protein (RAB geranylger 99.5 2.5E-18 8.7E-23 185.5 -17.2 215 61-304 346-567 (567)
109 2o6s_A Variable lymphocyte rec 99.5 4.5E-14 1.5E-18 132.2 13.9 174 68-273 11-189 (208)
110 1m9s_A Internalin B; cell inva 99.5 7E-14 2.4E-18 151.8 17.0 172 105-309 38-209 (605)
111 2v9t_B SLIT homolog 2 protein 99.5 1.4E-13 4.8E-18 130.2 16.3 127 181-308 34-163 (220)
112 3e6j_A Variable lymphocyte rec 99.5 2E-13 6.7E-18 130.0 16.2 152 157-310 19-172 (229)
113 2xot_A Amphoterin-induced prot 99.5 1E-13 3.6E-18 141.3 13.7 147 161-309 22-175 (361)
114 2v9t_B SLIT homolog 2 protein 99.5 3.6E-13 1.2E-17 127.3 15.8 146 181-329 13-163 (220)
115 1xeu_A Internalin C; cellular 99.5 8.6E-14 3E-18 135.4 10.7 173 62-267 17-189 (263)
116 2ell_A Acidic leucine-rich nuc 99.5 1.4E-13 4.9E-18 124.1 10.4 126 181-309 26-159 (168)
117 2xot_A Amphoterin-induced prot 99.5 3.6E-13 1.2E-17 137.3 14.5 128 181-309 66-201 (361)
118 2v70_A SLIT-2, SLIT homolog 2 99.4 1E-12 3.5E-17 124.2 15.1 146 181-329 13-164 (220)
119 2je0_A Acidic leucine-rich nuc 99.4 1.9E-13 6.6E-18 120.6 7.8 122 181-305 19-148 (149)
120 1xeu_A Internalin C; cellular 99.4 8.6E-13 2.9E-17 128.3 13.1 166 110-309 19-184 (263)
121 4b8c_D Glucose-repressible alc 99.4 9E-14 3.1E-18 154.5 4.0 143 181-328 226-369 (727)
122 1w8a_A SLIT protein; signaling 99.4 3.4E-12 1.2E-16 117.9 12.7 126 182-310 11-139 (192)
123 2ell_A Acidic leucine-rich nuc 99.4 2.1E-12 7.1E-17 116.4 10.2 137 132-292 22-165 (168)
124 2wfh_A SLIT homolog 2 protein 99.3 1E-11 3.5E-16 114.8 13.5 123 182-308 13-137 (193)
125 2wfh_A SLIT homolog 2 protein 99.3 1.2E-11 4.3E-16 114.2 14.0 122 161-283 14-136 (193)
126 3sb4_A Hypothetical leucine ri 99.3 9.6E-12 3.3E-16 125.0 13.9 100 201-304 225-328 (329)
127 1w8a_A SLIT protein; signaling 99.3 1.2E-11 4.1E-16 114.2 13.4 124 160-284 11-137 (192)
128 2o6r_A Variable lymphocyte rec 99.3 1.4E-11 4.7E-16 112.1 13.5 128 181-311 9-138 (177)
129 1a9n_A U2A', U2A'; complex (nu 99.3 2.5E-12 8.7E-17 116.9 7.7 125 181-308 21-151 (176)
130 4b8c_D Glucose-repressible alc 99.3 5.2E-13 1.8E-17 148.4 3.5 148 127-283 217-369 (727)
131 2je0_A Acidic leucine-rich nuc 99.3 4.1E-12 1.4E-16 112.0 8.0 124 200-327 15-149 (149)
132 1a9n_A U2A', U2A'; complex (nu 99.2 4.6E-12 1.6E-16 115.2 5.4 101 65-168 43-151 (176)
133 2o6r_A Variable lymphocyte rec 99.2 1.3E-10 4.5E-15 105.5 14.3 125 160-285 10-136 (177)
134 3sb4_A Hypothetical leucine ri 99.2 5.5E-11 1.9E-15 119.4 12.1 80 225-307 225-307 (329)
135 4fdw_A Leucine rich hypothetic 99.1 8.4E-09 2.9E-13 106.2 23.6 228 45-306 136-379 (401)
136 2r9u_A Variable lymphocyte rec 99.1 5.5E-10 1.9E-14 101.2 12.0 100 182-283 15-115 (174)
137 1ds9_A Outer arm dynein; leuci 99.1 3E-12 1E-16 118.8 -4.1 120 190-314 36-157 (198)
138 3g39_A Variable lymphocyte rec 99.1 7.8E-10 2.7E-14 99.8 12.0 101 181-283 11-112 (170)
139 4fdw_A Leucine rich hypothetic 99.0 1.7E-08 5.7E-13 104.0 20.8 245 64-326 113-378 (401)
140 2r9u_A Variable lymphocyte rec 99.0 2.3E-09 8E-14 97.0 11.5 102 204-309 14-117 (174)
141 1ds9_A Outer arm dynein; leuci 99.0 5E-12 1.7E-16 117.3 -6.8 118 181-303 50-180 (198)
142 4fs7_A Uncharacterized protein 98.9 1E-07 3.5E-12 98.0 23.1 285 8-314 60-358 (394)
143 3g39_A Variable lymphocyte rec 98.9 7.1E-09 2.4E-13 93.4 11.3 106 159-265 11-117 (170)
144 4fs7_A Uncharacterized protein 98.9 1.3E-07 4.6E-12 97.0 20.6 281 8-306 83-375 (394)
145 2ifg_A High affinity nerve gro 98.8 1.5E-08 5.2E-13 102.1 10.7 103 183-287 12-116 (347)
146 4gt6_A Cell surface protein; l 98.8 2.1E-06 7.1E-11 88.1 25.2 285 8-308 52-368 (394)
147 2ifg_A High affinity nerve gro 98.6 6.7E-08 2.3E-12 97.4 9.7 103 206-310 12-116 (347)
148 3un9_A NLR family member X1; l 98.5 4.4E-09 1.5E-13 107.3 -2.2 108 201-309 125-251 (372)
149 2ra8_A Uncharacterized protein 98.5 6.7E-08 2.3E-12 97.8 5.9 36 272-308 278-318 (362)
150 3un9_A NLR family member X1; l 98.5 5.5E-09 1.9E-13 106.5 -2.7 86 201-287 154-252 (372)
151 4gt6_A Cell surface protein; l 98.4 3.1E-05 1.1E-09 79.3 22.3 282 8-306 76-387 (394)
152 4h09_A Hypothetical leucine ri 98.3 6.8E-05 2.3E-09 76.1 22.7 275 13-304 40-340 (379)
153 2ra8_A Uncharacterized protein 98.3 2.7E-07 9.3E-12 93.4 3.5 154 82-261 167-341 (362)
154 4h09_A Hypothetical leucine ri 98.2 0.00034 1.2E-08 70.9 23.4 248 44-306 46-319 (379)
155 3e4g_A ATP synthase subunit S, 98.0 3E-06 1E-10 75.9 4.2 85 88-172 62-154 (176)
156 3e4g_A ATP synthase subunit S, 98.0 3.5E-06 1.2E-10 75.4 4.4 38 274-311 115-153 (176)
157 1io0_A Tropomodulin; LRR prote 97.9 4.3E-06 1.5E-10 76.1 2.6 112 196-308 30-162 (185)
158 1io0_A Tropomodulin; LRR prote 97.5 2.4E-05 8.1E-10 71.1 1.8 43 13-57 30-78 (185)
159 3rw6_A Nuclear RNA export fact 97.5 6.4E-05 2.2E-09 72.2 4.2 10 274-283 221-230 (267)
160 3rw6_A Nuclear RNA export fact 97.3 9.8E-05 3.4E-09 70.9 2.9 78 84-163 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 95.7 0.0067 2.3E-07 55.1 3.8 84 199-282 38-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 94.9 0.01 3.5E-07 53.9 2.4 85 222-307 37-136 (197)
163 3rfe_A Platelet glycoprotein I 94.3 0.059 2E-06 45.3 5.6 34 64-97 31-65 (130)
164 3rfe_A Platelet glycoprotein I 93.9 0.1 3.4E-06 43.9 6.3 52 254-308 12-66 (130)
165 2lz0_A Uncharacterized protein 33.9 39 0.0013 26.3 3.9 46 7-54 8-53 (100)
166 2lz0_A Uncharacterized protein 22.5 2E+02 0.0069 22.0 6.2 37 83-119 16-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.98 E-value=3.4e-32 Score=305.87 Aligned_cols=333 Identities=18% Similarity=0.202 Sum_probs=211.5
Q ss_pred CCCCCcEEEeeCCCCc-cccCCcCCCCCCCccEEEeCCCCCC-cc----cccccCccEEEcCCCCCc-cccccccCCC-C
Q 009053 17 KMTELRFLKFYGSENK-CMVSSLEGVPFTEVRYFEWHQYPLK-TL----DIHAENLVSLKMPGSKVK-QLWDDVQNLV-N 88 (545)
Q Consensus 17 ~m~~Lr~L~l~~~~~~-~l~~~l~~l~~~~Lr~L~l~~~~l~-~l----~~~~~~L~~L~L~~~~l~-~l~~~~~~l~-~ 88 (545)
.+++|+.|++++|... .+|..+..++ +|+.|++++|.+. .+ ...+++|++|++++|.+. .+|..+..++ +
T Consensus 292 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~ 369 (768)
T 3rgz_A 292 ACDTLTGLDLSGNHFYGAVPPFFGSCS--LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369 (768)
T ss_dssp TCTTCSEEECCSSEEEECCCGGGGGCT--TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTT
T ss_pred hcCcCCEEECcCCcCCCccchHHhcCC--CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcC
Confidence 3477777777766443 4566677776 7777777777665 33 345667777777777776 6666666665 6
Q ss_pred ccEEEecCCCCCCCCCC-CCC--CCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCcc-CCccccEEee
Q 009053 89 LKKIDLWYSKLLTKLPD-LSL--AQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI-QSKYLKRLVL 164 (545)
Q Consensus 89 L~~LdLs~~~~~~~~p~-l~~--l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L 164 (545)
|+.|++++|.+.+.+|. +.. +++|++|++++|...+.+|..++.+++|++|++++|...+.+|..+ .+++|+.|++
T Consensus 370 L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 449 (768)
T 3rgz_A 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449 (768)
T ss_dssp CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEEC
Confidence 77777777766554443 333 5667777777766655666666667777777777665555566555 6666777777
Q ss_pred cCCCCCCCCCccccCC--ccEEEcccccCc-ccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCc
Q 009053 165 RGCSNLKNFPEISSSG--IHRLDLTHVGIK-ELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKR 241 (545)
Q Consensus 165 ~~c~~l~~~p~~~~~~--L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~ 241 (545)
++|...+.+|...... |+.|++++|.+. .+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|...+.
T Consensus 450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 529 (768)
T 3rgz_A 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred CCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc
Confidence 7666555555544333 666777766666 4566666666777777776666666666666666677777766666666
Q ss_pred cccccCCCCCCcEEEecCccCc-CCCc-----------------------------------------------------
Q 009053 242 LPDELGNLKALEELRVEGTAIR-RPPE----------------------------------------------------- 267 (545)
Q Consensus 242 lp~~l~~l~~L~~L~L~~n~l~-~lp~----------------------------------------------------- 267 (545)
+|..++.+++|+.|++++|.+. .+|.
T Consensus 530 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 609 (768)
T 3rgz_A 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGG
T ss_pred CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccc
Confidence 6666666666666666666554 3332
Q ss_pred -----------------cCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccccCCC---CCCccEEeccC
Q 009053 268 -----------------SLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLPEL---PCNLHDLDASG 327 (545)
Q Consensus 268 -----------------~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip~~---~~sL~~L~l~~ 327 (545)
.++.+++|+.|+|++|...+.+|..++.+++|+.|+|++|...+.+|+. .++|+.|++++
T Consensus 610 ~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689 (768)
T ss_dssp TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC
Confidence 2233456667777777433466777777777777777777666666653 35666777777
Q ss_pred CCCCCccCCcccC-CcccEEEEcCC
Q 009053 328 CTSLEALPASLSS-KFYLSVDLSNC 351 (545)
Q Consensus 328 c~~L~~l~~~~~~-~~~~~l~l~~C 351 (545)
|...+.+|..+.. ..++.|+++++
T Consensus 690 N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 690 NKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp SCCEECCCGGGGGCCCCSEEECCSS
T ss_pred CcccCcCChHHhCCCCCCEEECcCC
Confidence 6555566654431 12346666665
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=2.3e-31 Score=299.20 Aligned_cols=326 Identities=20% Similarity=0.223 Sum_probs=264.0
Q ss_pred cChhhhhCCCCCcEEEeeCCCCc-cccCC-cCCCCCCCccEEEeCCCCCC-cc---ccccc-CccEEEcCCCCCc-cccc
Q 009053 10 INPYTFSKMTELRFLKFYGSENK-CMVSS-LEGVPFTEVRYFEWHQYPLK-TL---DIHAE-NLVSLKMPGSKVK-QLWD 81 (545)
Q Consensus 10 ~~~~~f~~m~~Lr~L~l~~~~~~-~l~~~-l~~l~~~~Lr~L~l~~~~l~-~l---~~~~~-~L~~L~L~~~~l~-~l~~ 81 (545)
..+.+|+++++|+.|++++|... .+|.. +..++ +|++|++++|.+. .+ ...+. +|++|++++|.+. .++.
T Consensus 309 ~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~--~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~ 386 (768)
T 3rgz_A 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR--GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT--TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT
T ss_pred ccchHHhcCCCccEEECCCCcccCcCCHHHHhcCC--CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh
Confidence 55778899999999999887554 67755 88887 8999999998876 33 33444 8888888888877 4555
Q ss_pred cccC--CCCccEEEecCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCcc-CCc
Q 009053 82 DVQN--LVNLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI-QSK 157 (545)
Q Consensus 82 ~~~~--l~~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~ 157 (545)
.+.. +++|+.|++++|.+.+.+|. ++.+++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|..+ .++
T Consensus 387 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 466 (768)
T 3rgz_A 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466 (768)
T ss_dssp TTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred hhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 5555 77888888888888766664 7788888888888887777788888888888888888887777788777 788
Q ss_pred cccEEeecCCCCCCCCCccccCC--ccEEEcccccCc-ccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEe
Q 009053 158 YLKRLVLRGCSNLKNFPEISSSG--IHRLDLTHVGIK-ELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEII 234 (545)
Q Consensus 158 ~L~~L~L~~c~~l~~~p~~~~~~--L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls 234 (545)
+|+.|++++|...+.+|...... |+.|++++|.+. .+|.+++.+++|+.|++++|...+.+|..+..+++|+.|+++
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 88888888887776777665544 888888888887 578888888888888888888888888888888888888888
Q ss_pred CCCCCCccccc---------------------------------------------------------------------
Q 009053 235 YCPKLKRLPDE--------------------------------------------------------------------- 245 (545)
Q Consensus 235 ~c~~~~~lp~~--------------------------------------------------------------------- 245 (545)
+|...+.+|..
T Consensus 547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence 88776555543
Q ss_pred -cCCCCCCcEEEecCccCc-CCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccccCCC---CCCc
Q 009053 246 -LGNLKALEELRVEGTAIR-RPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLPEL---PCNL 320 (545)
Q Consensus 246 -l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip~~---~~sL 320 (545)
++.+++|+.|++++|.++ .+|..++.++.|+.|+|++|...+.+|..++++++|+.|+|++|+..+.+|.. .++|
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L 706 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence 344678999999999998 78999999999999999999555599999999999999999999998899875 3678
Q ss_pred cEEeccCCCCCCccCCc
Q 009053 321 HDLDASGCTSLEALPAS 337 (545)
Q Consensus 321 ~~L~l~~c~~L~~l~~~ 337 (545)
++|++++|...+.+|..
T Consensus 707 ~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 707 TEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp SEEECCSSEEEEECCSS
T ss_pred CEEECcCCcccccCCCc
Confidence 99999999877777754
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=9.8e-31 Score=287.69 Aligned_cols=333 Identities=16% Similarity=0.176 Sum_probs=256.3
Q ss_pred hhhhhCCCCCcEEEeeCCCCcc------------------ccCCcC--CCCCCCccEEEeCCCCCCcc----cccccCcc
Q 009053 12 PYTFSKMTELRFLKFYGSENKC------------------MVSSLE--GVPFTEVRYFEWHQYPLKTL----DIHAENLV 67 (545)
Q Consensus 12 ~~~f~~m~~Lr~L~l~~~~~~~------------------l~~~l~--~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~ 67 (545)
|.+|++|++||+|++++|.... +|..+. .++ +|++|++++|.+... ...+++|+
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~--~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK--DLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT--TCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccC--CCCEEEecCCcCCccChHHHhcCCCCC
Confidence 4579999999999999987666 888888 887 999999999876554 56788899
Q ss_pred EEEcCCCC-Ccc--ccccccCC------CCccEEEecCCCCCCCCCC---CCCCCCccEEEeeCCCCCccccccccCCCC
Q 009053 68 SLKMPGSK-VKQ--LWDDVQNL------VNLKKIDLWYSKLLTKLPD---LSLAQNLEILDLGGCSSLTETHSSIQYLNK 135 (545)
Q Consensus 68 ~L~L~~~~-l~~--l~~~~~~l------~~L~~LdLs~~~~~~~~p~---l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~ 135 (545)
+|++++|+ ++. +|..+..+ ++|+.|+|++|.+. .+|. ++.+++|+.|++++|...+.+| .++.+++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 99999998 874 78777665 89999999998887 6665 8888999999999887666788 8888888
Q ss_pred CCEEEecCCCCCCccCCcc-CCcc-ccEEeecCCCCCCCCCccccC----CccEEEcccccCcc-cCcccc-------CC
Q 009053 136 LEVLDLDRCESLRTLPTSI-QSKY-LKRLVLRGCSNLKNFPEISSS----GIHRLDLTHVGIKE-LPSSID-------RL 201 (545)
Q Consensus 136 L~~L~L~~c~~l~~lp~~~-~l~~-L~~L~L~~c~~l~~~p~~~~~----~L~~L~l~~~~i~~-lp~~~~-------~l 201 (545)
|++|++++|. +..+|..+ .+++ |+.|++++|. ++.+|..... .|+.|++++|.+.+ +|..+. .+
T Consensus 355 L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 355 LASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp ESEEECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CCEEECCCCc-cccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 8899888875 44777776 7777 8888888876 4477765443 28888888888875 455666 67
Q ss_pred CCCCEEEecCCCCCcccccc-ccCCCCCcEEEEeCCCCCCccccccCC--------CCCCcEEEecCccCcCCCccCC--
Q 009053 202 SKLDTLKIHDCTSLESLPSS-LSMFKSLTSLEIIYCPKLKRLPDELGN--------LKALEELRVEGTAIRRPPESLG-- 270 (545)
Q Consensus 202 ~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~Ls~c~~~~~lp~~l~~--------l~~L~~L~L~~n~l~~lp~~l~-- 270 (545)
++|+.|++++|... .+|.. +..+++|+.|++++|... .+|..... +++|+.|++++|.++.+|..+.
T Consensus 433 ~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~ 510 (636)
T 4eco_A 433 INVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510 (636)
T ss_dssp CCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTT
T ss_pred CCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhc
Confidence 78888888887665 55554 445888888888888766 55544322 2388888888888888888876
Q ss_pred CCCCCcEEeccCCcCCCcchhhhcCCCCCCEEecc------CCcCccccCCC---CCCccEEeccCCCCCCccCCcccCC
Q 009053 271 QLSSLQILSLSDNSNLERAPESIRHLSKLTSLFIS------DCKMLQTLPEL---PCNLHDLDASGCTSLEALPASLSSK 341 (545)
Q Consensus 271 ~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~------~c~~l~~ip~~---~~sL~~L~l~~c~~L~~l~~~~~~~ 341 (545)
.+++|+.|+|++| .++.+|..+..+++|+.|+++ +|...+.+|.. .++|+.|++++|.. +.+|.... .
T Consensus 511 ~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~ 587 (636)
T 4eco_A 511 TLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-P 587 (636)
T ss_dssp TCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-T
T ss_pred cCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-C
Confidence 8888888888888 666688888888888888884 45556667653 36788888888755 77877655 4
Q ss_pred cccEEEEcCCCCCC
Q 009053 342 FYLSVDLSNCLKLD 355 (545)
Q Consensus 342 ~~~~l~l~~C~~L~ 355 (545)
.++.|++++|+-..
T Consensus 588 ~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 588 NISVLDIKDNPNIS 601 (636)
T ss_dssp TCCEEECCSCTTCE
T ss_pred cCCEEECcCCCCcc
Confidence 55688888876443
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.1e-30 Score=289.81 Aligned_cols=332 Identities=17% Similarity=0.175 Sum_probs=242.3
Q ss_pred hhhhhCCCCCcEEEeeCCCCcc------------------ccCCcC--CCCCCCccEEEeCCCCCCcc----cccccCcc
Q 009053 12 PYTFSKMTELRFLKFYGSENKC------------------MVSSLE--GVPFTEVRYFEWHQYPLKTL----DIHAENLV 67 (545)
Q Consensus 12 ~~~f~~m~~Lr~L~l~~~~~~~------------------l~~~l~--~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~ 67 (545)
|..|++|++|++|++++|.... +|..+. .++ +|++|++++|.+... ...+++|+
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~--~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK--DLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT--TCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC--CCCEEECcCCCCCccChHHHhCCCCCC
Confidence 4578999999999999876665 888877 887 899999988875543 56778888
Q ss_pred EEEcCCCC-Ccc--ccccccCC-------CCccEEEecCCCCCCCCCC---CCCCCCccEEEeeCCCCCccccccccCCC
Q 009053 68 SLKMPGSK-VKQ--LWDDVQNL-------VNLKKIDLWYSKLLTKLPD---LSLAQNLEILDLGGCSSLTETHSSIQYLN 134 (545)
Q Consensus 68 ~L~L~~~~-l~~--l~~~~~~l-------~~L~~LdLs~~~~~~~~p~---l~~l~~L~~L~L~~c~~l~~~~~~i~~l~ 134 (545)
+|+|++|+ ++. +|..+..+ ++|+.|+|++|.+. .+|. ++.+++|+.|+|++|... .+| .++.++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~ 595 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV 595 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC
Confidence 88888887 764 66655444 48888888888877 6665 788888888888887654 777 788888
Q ss_pred CCCEEEecCCCCCCccCCcc-CCcc-ccEEeecCCCCCCCCCccccCC----ccEEEcccccCcccCc----ccc--CCC
Q 009053 135 KLEVLDLDRCESLRTLPTSI-QSKY-LKRLVLRGCSNLKNFPEISSSG----IHRLDLTHVGIKELPS----SID--RLS 202 (545)
Q Consensus 135 ~L~~L~L~~c~~l~~lp~~~-~l~~-L~~L~L~~c~~l~~~p~~~~~~----L~~L~l~~~~i~~lp~----~~~--~l~ 202 (545)
+|+.|++++|... .+|..+ .+++ |+.|++++|. +..+|...... |+.|++++|.+.+.++ .+. .++
T Consensus 596 ~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred cceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 8888888887644 777666 7777 8888888876 44677654432 7888888888765432 223 345
Q ss_pred CCCEEEecCCCCCcccccccc-CCCCCcEEEEeCCCCCCccccccCC--------CCCCcEEEecCccCcCCCccCC--C
Q 009053 203 KLDTLKIHDCTSLESLPSSLS-MFKSLTSLEIIYCPKLKRLPDELGN--------LKALEELRVEGTAIRRPPESLG--Q 271 (545)
Q Consensus 203 ~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~Ls~c~~~~~lp~~l~~--------l~~L~~L~L~~n~l~~lp~~l~--~ 271 (545)
+|+.|++++|... .+|..+. .+++|+.|++++|... .+|..+.. +++|+.|++++|.++.+|..+. .
T Consensus 674 ~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~ 751 (876)
T 4ecn_A 674 NASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751 (876)
T ss_dssp CEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTT
T ss_pred CcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhcc
Confidence 7888888887655 5665543 7788888888887655 56654333 2378888888888888887776 7
Q ss_pred CCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccC------CcCccccCCC---CCCccEEeccCCCCCCccCCcccCCc
Q 009053 272 LSSLQILSLSDNSNLERAPESIRHLSKLTSLFISD------CKMLQTLPEL---PCNLHDLDASGCTSLEALPASLSSKF 342 (545)
Q Consensus 272 l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~------c~~l~~ip~~---~~sL~~L~l~~c~~L~~l~~~~~~~~ 342 (545)
+++|+.|+|++| .+..+|..+..+++|+.|+|++ |...+.+|.. .++|+.|++++|.. +.+|.... ..
T Consensus 752 l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~-~~ 828 (876)
T 4ecn_A 752 LPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT-PQ 828 (876)
T ss_dssp CTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-SS
T ss_pred CCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc-CC
Confidence 888888888888 6666887788888888888866 5555666643 46788888888754 77777655 44
Q ss_pred ccEEEEcCCCCCC
Q 009053 343 YLSVDLSNCLKLD 355 (545)
Q Consensus 343 ~~~l~l~~C~~L~ 355 (545)
++.|++++|+-..
T Consensus 829 L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 829 LYILDIADNPNIS 841 (876)
T ss_dssp SCEEECCSCTTCE
T ss_pred CCEEECCCCCCCc
Confidence 5578888876443
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.1e-29 Score=277.95 Aligned_cols=344 Identities=22% Similarity=0.196 Sum_probs=237.5
Q ss_pred cccccChhhhhCCCCCcEEEeeCCCCccc-cCCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCccc-
Q 009053 6 SEIQINPYTFSKMTELRFLKFYGSENKCM-VSSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQL- 79 (545)
Q Consensus 6 ~~~~~~~~~f~~m~~Lr~L~l~~~~~~~l-~~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l- 79 (545)
....+.+.+|+++++||+|++++|....+ |..+..++ +|++|++++|.+..+ ...+++|++|++++|.++.+
T Consensus 44 ~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~ 121 (606)
T 3t6q_A 44 VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH--RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121 (606)
T ss_dssp CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCT--TCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG
T ss_pred ccCcCChhHhccCccceEEECCCCccceeChhhccCcc--ccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC
Confidence 34567788999999999999999866655 67899997 999999999998877 56789999999999999987
Q ss_pred cccccCCCCccEEEecCCCCCC-CCCCCCCCCCccEEEeeCCCCCccccccccCCCCCC--EEEecCCCCCCccCCccCC
Q 009053 80 WDDVQNLVNLKKIDLWYSKLLT-KLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLE--VLDLDRCESLRTLPTSIQS 156 (545)
Q Consensus 80 ~~~~~~l~~L~~LdLs~~~~~~-~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~--~L~L~~c~~l~~lp~~~~l 156 (545)
+..+..+++|++|++++|.+.. ..|.+..+++|+.|++++|......+..++.+++|+ .|++++|...+..|..+..
T Consensus 122 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~ 201 (606)
T 3t6q_A 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201 (606)
T ss_dssp GSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT
T ss_pred cchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh
Confidence 5778999999999999998877 447777799999999999877666677889999999 8999998655555544455
Q ss_pred ccccEEeecCCC---------------------------------------------------CCCCCCc-cccCC--cc
Q 009053 157 KYLKRLVLRGCS---------------------------------------------------NLKNFPE-ISSSG--IH 182 (545)
Q Consensus 157 ~~L~~L~L~~c~---------------------------------------------------~l~~~p~-~~~~~--L~ 182 (545)
.+|+.|++++|. .+..++. ..... |+
T Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 281 (606)
T 3t6q_A 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ 281 (606)
T ss_dssp CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCS
T ss_pred ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCC
Confidence 555555555443 1222222 12222 67
Q ss_pred EEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCcccc-ccCCCCCCcEEEecCcc
Q 009053 183 RLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPD-ELGNLKALEELRVEGTA 261 (545)
Q Consensus 183 ~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~-~l~~l~~L~~L~L~~n~ 261 (545)
+|++++|.++++|..+..+++|++|++++|...+..|..+..+++|++|++++|...+.+|. .++.+++|++|++++|.
T Consensus 282 ~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 282 ELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361 (606)
T ss_dssp EEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC
T ss_pred EEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc
Confidence 77777777777776677777777777777666655566666677777777777666555543 36667777777777776
Q ss_pred CcCC---CccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccccCC----CCCCccEEeccCCCCCCcc
Q 009053 262 IRRP---PESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLPE----LPCNLHDLDASGCTSLEAL 334 (545)
Q Consensus 262 l~~l---p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip~----~~~sL~~L~l~~c~~L~~l 334 (545)
+..+ +..+..+++|+.|++++|......|..+..+++|+.|++++|+.....|. ..++|+.|++++|......
T Consensus 362 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 441 (606)
T 3t6q_A 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441 (606)
T ss_dssp CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC
T ss_pred cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcC
Confidence 6643 45566677777777777632224455666667777777776665444332 2356667777666433333
Q ss_pred CCcccC-CcccEEEEcCC
Q 009053 335 PASLSS-KFYLSVDLSNC 351 (545)
Q Consensus 335 ~~~~~~-~~~~~l~l~~C 351 (545)
+..... ..++.|++++|
T Consensus 442 ~~~~~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 442 EQLFDGLPALQHLNLQGN 459 (606)
T ss_dssp TTTTTTCTTCCEEECTTC
T ss_pred HHHHhCCCCCCEEECCCC
Confidence 322211 22345666655
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=6.1e-30 Score=280.05 Aligned_cols=196 Identities=19% Similarity=0.182 Sum_probs=108.7
Q ss_pred cccCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCCCCCCCccccCCccEEEcccccCccc---CccccCCCCCC
Q 009053 129 SIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKEL---PSSIDRLSKLD 205 (545)
Q Consensus 129 ~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~l---p~~~~~l~~L~ 205 (545)
.+..+++|++|++++|.. +.+|.. .+++|+.|++++|..+..++......|+.|++++|.+.++ |..+..+++|+
T Consensus 302 ~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~ 379 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379 (606)
T ss_dssp CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCC
T ss_pred hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCccc
Confidence 355667888999999876 888855 8888888888888655544322222266666666666554 45555566666
Q ss_pred EEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccc-cccCCCCCCcEEEecCccCcC-CCccCCCCCCCcEEeccCC
Q 009053 206 TLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLP-DELGNLKALEELRVEGTAIRR-PPESLGQLSSLQILSLSDN 283 (545)
Q Consensus 206 ~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp-~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n 283 (545)
.|++++|. +..+|..+..+++|+.|++++|...+..| ..+..+++|+.|++++|.+.. .|..+..+++|+.|++++|
T Consensus 380 ~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 380 HLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp EEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred EeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence 66666554 22344445555555555555554444444 344555555555555555542 3444555555555555555
Q ss_pred cCCC--cchhhhcCCCCCCEEeccCCcCccccCCC---CCCccEEeccCC
Q 009053 284 SNLE--RAPESIRHLSKLTSLFISDCKMLQTLPEL---PCNLHDLDASGC 328 (545)
Q Consensus 284 ~~~~--~lp~~l~~l~~L~~L~L~~c~~l~~ip~~---~~sL~~L~l~~c 328 (545)
.+. .+|..+..+++|+.|++++|...+..|.. .++|+.|++++|
T Consensus 459 -~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 459 -SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp -EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred -cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 222 14444555555555555555443333321 234555555554
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.2e-30 Score=286.87 Aligned_cols=314 Identities=17% Similarity=0.211 Sum_probs=270.7
Q ss_pred Chhhhh--CCCCCcEEEeeCCC-CccccCCcCCCCCCCccEEEeCCCC-CCc--c---ccc------ccCccEEEcCCCC
Q 009053 11 NPYTFS--KMTELRFLKFYGSE-NKCMVSSLEGVPFTEVRYFEWHQYP-LKT--L---DIH------AENLVSLKMPGSK 75 (545)
Q Consensus 11 ~~~~f~--~m~~Lr~L~l~~~~-~~~l~~~l~~l~~~~Lr~L~l~~~~-l~~--l---~~~------~~~L~~L~L~~~~ 75 (545)
-|..|+ +|++|++|++++|. .+.+|..+..++ +|++|++++|. ++. + ... +++|++|++++|+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP--EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS--SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCC--CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 355666 99999999999975 567899999998 99999999998 875 4 333 3899999999999
Q ss_pred Cccccc--cccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCC-CCEEEecCCCCCCccCC
Q 009053 76 VKQLWD--DVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNK-LEVLDLDRCESLRTLPT 152 (545)
Q Consensus 76 l~~l~~--~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~-L~~L~L~~c~~l~~lp~ 152 (545)
++.+|. .+..+++|+.|++++|.+.+.+|.++.+++|+.|++++|.. ..+|..++.+++ |++|++++|. +..+|.
T Consensus 317 l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~ 394 (636)
T 4eco_A 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQI-TEIPANFCGFTEQVENLSFAHNK-LKYIPN 394 (636)
T ss_dssp CSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEE-EECCTTSEEECTTCCEEECCSSC-CSSCCS
T ss_pred CCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCcc-ccccHhhhhhcccCcEEEccCCc-Ccccch
Confidence 999998 89999999999999999887888888999999999999864 489999999999 9999999986 448888
Q ss_pred cc-C--CccccEEeecCCCCCCCCCcccc-------C--CccEEEcccccCcccCcccc-CCCCCCEEEecCCCCCcccc
Q 009053 153 SI-Q--SKYLKRLVLRGCSNLKNFPEISS-------S--GIHRLDLTHVGIKELPSSID-RLSKLDTLKIHDCTSLESLP 219 (545)
Q Consensus 153 ~~-~--l~~L~~L~L~~c~~l~~~p~~~~-------~--~L~~L~l~~~~i~~lp~~~~-~l~~L~~L~L~~~~~l~~lp 219 (545)
.+ . +++|+.|++++|...+..|.... . .|+.|++++|.+.++|..+. .+++|+.|++++|... .+|
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~ 473 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIP 473 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcC
Confidence 76 3 45899999999987776665444 2 29999999999999998754 5999999999998876 677
Q ss_pred ccccC--------CCCCcEEEEeCCCCCCccccccC--CCCCCcEEEecCccCcCCCccCCCCCCCcEEecc------CC
Q 009053 220 SSLSM--------FKSLTSLEIIYCPKLKRLPDELG--NLKALEELRVEGTAIRRPPESLGQLSSLQILSLS------DN 283 (545)
Q Consensus 220 ~~l~~--------l~~L~~L~Ls~c~~~~~lp~~l~--~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~------~n 283 (545)
..+.. +++|+.|++++|... .+|..+. .+++|+.|++++|.++.+|..+..+++|+.|+|+ +|
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred HHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccC
Confidence 65433 239999999999876 7888887 9999999999999999999999999999999995 45
Q ss_pred cCCCcchhhhcCCCCCCEEeccCCcCccccCC-CCCCccEEeccCCCCC
Q 009053 284 SNLERAPESIRHLSKLTSLFISDCKMLQTLPE-LPCNLHDLDASGCTSL 331 (545)
Q Consensus 284 ~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip~-~~~sL~~L~l~~c~~L 331 (545)
...+.+|..+..+++|+.|+|++|+. +.+|. +.++|+.|++++|+..
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPNI 600 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTTC
T ss_pred cccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCCCc
Confidence 45668999999999999999999987 88886 5689999999999644
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=5.8e-30 Score=287.60 Aligned_cols=310 Identities=17% Similarity=0.188 Sum_probs=267.3
Q ss_pred hhCCCCCcEEEeeCCC-CccccCCcCCCCCCCccEEEeCCCC-CCc--c---cc-------cccCccEEEcCCCCCcccc
Q 009053 15 FSKMTELRFLKFYGSE-NKCMVSSLEGVPFTEVRYFEWHQYP-LKT--L---DI-------HAENLVSLKMPGSKVKQLW 80 (545)
Q Consensus 15 f~~m~~Lr~L~l~~~~-~~~l~~~l~~l~~~~Lr~L~l~~~~-l~~--l---~~-------~~~~L~~L~L~~~~l~~l~ 80 (545)
|.+|++|++|++++|. ...+|..+..++ +|+.|++++|. ++. + .. .+++|++|+|++|.+..+|
T Consensus 487 f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~--~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip 564 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLP--ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564 (876)
T ss_dssp GGGCTTCCEEEEESCTTCCSCCGGGGGCS--SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCC
T ss_pred hccCCCCCEEECcCCCCCccChHHHhCCC--CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccC
Confidence 4499999999999974 668899999998 99999999998 775 3 22 3459999999999999999
Q ss_pred c--cccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCC-CCEEEecCCCCCCccCCcc-CC
Q 009053 81 D--DVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNK-LEVLDLDRCESLRTLPTSI-QS 156 (545)
Q Consensus 81 ~--~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~-L~~L~L~~c~~l~~lp~~~-~l 156 (545)
. .+..+++|+.|+|++|.+. .+|.++.+++|+.|++++|... .+|..+..+++ |+.|++++|. +..+|..+ .+
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~ 641 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAK 641 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTT
T ss_pred ChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCcCchhhhcc
Confidence 8 8999999999999999987 7889999999999999998755 89999999999 9999999986 55888776 33
Q ss_pred --ccccEEeecCCCCCCCCCccc------c-CCccEEEcccccCcccCcccc-CCCCCCEEEecCCCCCccccccccCC-
Q 009053 157 --KYLKRLVLRGCSNLKNFPEIS------S-SGIHRLDLTHVGIKELPSSID-RLSKLDTLKIHDCTSLESLPSSLSMF- 225 (545)
Q Consensus 157 --~~L~~L~L~~c~~l~~~p~~~------~-~~L~~L~l~~~~i~~lp~~~~-~l~~L~~L~L~~~~~l~~lp~~l~~l- 225 (545)
++|+.|++++|...+.+|.+. . ..|+.|++++|.+..+|..+. .+++|+.|+|++|... .+|..+...
T Consensus 642 ~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~ 720 (876)
T 4ecn_A 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPK 720 (876)
T ss_dssp CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT
T ss_pred ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc
Confidence 459999999987766555443 1 129999999999999998875 8999999999998765 777665443
Q ss_pred -------CCCcEEEEeCCCCCCccccccC--CCCCCcEEEecCccCcCCCccCCCCCCCcEEeccC------CcCCCcch
Q 009053 226 -------KSLTSLEIIYCPKLKRLPDELG--NLKALEELRVEGTAIRRPPESLGQLSSLQILSLSD------NSNLERAP 290 (545)
Q Consensus 226 -------~~L~~L~Ls~c~~~~~lp~~l~--~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~------n~~~~~lp 290 (545)
++|+.|++++|... .+|..+. .+++|+.|++++|.++.+|..+..+++|+.|+|++ |...+.+|
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip 799 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC
T ss_pred cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccCh
Confidence 39999999999766 7898887 99999999999999999999999999999999977 54456899
Q ss_pred hhhcCCCCCCEEeccCCcCccccCC-CCCCccEEeccCCCCCC
Q 009053 291 ESIRHLSKLTSLFISDCKMLQTLPE-LPCNLHDLDASGCTSLE 332 (545)
Q Consensus 291 ~~l~~l~~L~~L~L~~c~~l~~ip~-~~~sL~~L~l~~c~~L~ 332 (545)
..+.++++|+.|+|++|.. +.+|. ++++|+.|++++|+...
T Consensus 800 ~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 800 TGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNIS 841 (876)
T ss_dssp TTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTTCE
T ss_pred HHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCCCc
Confidence 9999999999999999987 88887 56899999999997543
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=3.8e-29 Score=273.75 Aligned_cols=340 Identities=19% Similarity=0.195 Sum_probs=231.8
Q ss_pred cccChhhhhCCCCCcEEEeeCCCCccc-cCCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCcccc-c
Q 009053 8 IQINPYTFSKMTELRFLKFYGSENKCM-VSSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLW-D 81 (545)
Q Consensus 8 ~~~~~~~f~~m~~Lr~L~l~~~~~~~l-~~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~-~ 81 (545)
..+.+.+|+++++||+|++++|....+ |..+..++ +|++|++++|.++.+ ...+++|++|++++|.++.++ .
T Consensus 45 ~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~--~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 122 (606)
T 3vq2_A 45 KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLH--HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF 122 (606)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT--TCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSS
T ss_pred CEeChhhccCCccCcEEeCCCCcccccCHHHhhchh--hcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccccc
Confidence 344555666666666666666544444 34455555 666666666665555 335566666666666665554 4
Q ss_pred cccCCCCccEEEecCCCCCC-CCCC-CCCCCCccEEEeeCCCCCcccccc------------------------------
Q 009053 82 DVQNLVNLKKIDLWYSKLLT-KLPD-LSLAQNLEILDLGGCSSLTETHSS------------------------------ 129 (545)
Q Consensus 82 ~~~~l~~L~~LdLs~~~~~~-~~p~-l~~l~~L~~L~L~~c~~l~~~~~~------------------------------ 129 (545)
.+.++++|++|++++|.+.. .+|. ++.+++|++|++++|......+..
T Consensus 123 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~ 202 (606)
T 3vq2_A 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202 (606)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTT
T ss_pred ccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCccccc
Confidence 45666666666666665543 3333 555556666655555332211111
Q ss_pred ------------------------------------------------------------------------------cc
Q 009053 130 ------------------------------------------------------------------------------IQ 131 (545)
Q Consensus 130 ------------------------------------------------------------------------------i~ 131 (545)
+.
T Consensus 203 ~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~ 282 (606)
T 3vq2_A 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282 (606)
T ss_dssp TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCG
T ss_pred CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccc
Confidence 22
Q ss_pred CCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecC
Q 009053 132 YLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHD 211 (545)
Q Consensus 132 ~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~ 211 (545)
.+++|+.|++++|. +..+|....+++|+.|++++|.. +.+|.+....|+.|++++|....- ..+..+++|+.|++++
T Consensus 283 ~l~~L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~-~~~~~l~~L~~L~ls~ 359 (606)
T 3vq2_A 283 CLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSIS-FKKVALPSLSYLDLSR 359 (606)
T ss_dssp GGTTCSEEEEESCC-CCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEE-CCCCCCTTCCEEECCS
T ss_pred cCCCCCEEEecCcc-chhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccc-hhhccCCCCCEEECcC
Confidence 34455555555543 34555323778899999999876 888866222299999999954432 2577899999999999
Q ss_pred CCCCcc--ccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCC--ccCCCCCCCcEEeccCCcCCC
Q 009053 212 CTSLES--LPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPP--ESLGQLSSLQILSLSDNSNLE 287 (545)
Q Consensus 212 ~~~l~~--lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~n~~~~ 287 (545)
|...+. +|..+..+++|++|++++|.. ..+|..++.+++|+.|++++|.+...+ ..+..+++|+.|++++|....
T Consensus 360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp SCEEEEEECCHHHHCCSCCCEEECCSCSE-EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred CccCCCcchhhhhccCCcccEeECCCCcc-ccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc
Confidence 876554 477889999999999999874 447788999999999999999998664 478899999999999995444
Q ss_pred cchhhhcCCCCCCEEeccCCcCccc-cCCC---CCCccEEeccCCCCCCccCCcccC-CcccEEEEcCCCC
Q 009053 288 RAPESIRHLSKLTSLFISDCKMLQT-LPEL---PCNLHDLDASGCTSLEALPASLSS-KFYLSVDLSNCLK 353 (545)
Q Consensus 288 ~lp~~l~~l~~L~~L~L~~c~~l~~-ip~~---~~sL~~L~l~~c~~L~~l~~~~~~-~~~~~l~l~~C~~ 353 (545)
..|..+..+++|+.|++++|...+. +|.. .++|+.|++++|...+..+..... ..++.|++++|.-
T Consensus 439 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence 6788899999999999999987764 5653 478999999999544444443321 3356899999843
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.7e-29 Score=273.10 Aligned_cols=336 Identities=18% Similarity=0.191 Sum_probs=195.6
Q ss_pred cccChhhhhCCCCCcEEEeeCCCCcccc-CCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCcc--cc
Q 009053 8 IQINPYTFSKMTELRFLKFYGSENKCMV-SSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQ--LW 80 (545)
Q Consensus 8 ~~~~~~~f~~m~~Lr~L~l~~~~~~~l~-~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~--l~ 80 (545)
..+.+.+|++|++||+|++++|....++ ..+..++ +|++|++++|.+..+ ...+++|++|++++|.++. .+
T Consensus 39 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 116 (549)
T 2z81_A 39 TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG--SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116 (549)
T ss_dssp CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT--TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS
T ss_pred CccChhhhhcCCcccEEECCCCCcCccChhhccccc--cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchh
Confidence 3455677888888888888877666555 5677776 888888888887777 4467788888888888874 35
Q ss_pred ccccCCCCccEEEecCCCCCCCCC--CCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCcc--CC
Q 009053 81 DDVQNLVNLKKIDLWYSKLLTKLP--DLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI--QS 156 (545)
Q Consensus 81 ~~~~~l~~L~~LdLs~~~~~~~~p--~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l 156 (545)
..+..+++|+.|++++|...+.+| .++.+++|++|++++|...+..|..++.+++|++|++++|.. ..+|... .+
T Consensus 117 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~~~l 195 (549)
T 2z81_A 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AFLLEIFADIL 195 (549)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-TTHHHHHHHST
T ss_pred hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc-cccchhhHhhc
Confidence 667888888888888887655554 477788888888888776666666666655555555554431 2222221 34
Q ss_pred ccccEEeecCCCCCCCC--Ccc----c-----------------------------------------------------
Q 009053 157 KYLKRLVLRGCSNLKNF--PEI----S----------------------------------------------------- 177 (545)
Q Consensus 157 ~~L~~L~L~~c~~l~~~--p~~----~----------------------------------------------------- 177 (545)
++|+.|++++|...+.. |.. .
T Consensus 196 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 275 (549)
T 2z81_A 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275 (549)
T ss_dssp TTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTT
T ss_pred ccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchh
Confidence 44555555444321100 000 0
Q ss_pred ---------------------------------cCCccEEEcccccCcccCccc-cCCCCCCEEEecCCCCCccccc---
Q 009053 178 ---------------------------------SSGIHRLDLTHVGIKELPSSI-DRLSKLDTLKIHDCTSLESLPS--- 220 (545)
Q Consensus 178 ---------------------------------~~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~L~~~~~l~~lp~--- 220 (545)
...++.|++++|.+..+|..+ ..+++|+.|++++|...+.+|.
T Consensus 276 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 355 (549)
T 2z81_A 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355 (549)
T ss_dssp CCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHT
T ss_pred hhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchh
Confidence 011455555555555555554 3466666666666665554432
Q ss_pred cccCCCCCcEEEEeCCCCCCcc--ccccCCCCCCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCC
Q 009053 221 SLSMFKSLTSLEIIYCPKLKRL--PDELGNLKALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPESIRHLSK 298 (545)
Q Consensus 221 ~l~~l~~L~~L~Ls~c~~~~~l--p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~ 298 (545)
.+..+++|+.|++++|...+.. +..++.+++|++|++++|.++.+|..+..+++|+.|++++| .++.+|..+. ++
T Consensus 356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~~~--~~ 432 (549)
T 2z81_A 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKTCIP--QT 432 (549)
T ss_dssp CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTS-CCSCCCTTSC--TT
T ss_pred hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCC-Ccccccchhc--CC
Confidence 2455666666666666544322 13455666666666666666666666666666666666666 4555554332 35
Q ss_pred CCEEeccCCcCccccCCCCCCccEEeccCCCCCCccCCcccCCcccEEEEcCC
Q 009053 299 LTSLFISDCKMLQTLPELPCNLHDLDASGCTSLEALPASLSSKFYLSVDLSNC 351 (545)
Q Consensus 299 L~~L~L~~c~~l~~ip~~~~sL~~L~l~~c~~L~~l~~~~~~~~~~~l~l~~C 351 (545)
|+.|++++|+. +.++...++|++|++++| .++.+|.......++.|+++++
T Consensus 433 L~~L~Ls~N~l-~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 433 LEVLDVSNNNL-DSFSLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRN 483 (549)
T ss_dssp CSEEECCSSCC-SCCCCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSS
T ss_pred ceEEECCCCCh-hhhcccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCC
Confidence 55555555532 223334445555555554 3344443221122334555444
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=2.9e-28 Score=266.74 Aligned_cols=342 Identities=20% Similarity=0.182 Sum_probs=219.4
Q ss_pred ccccChhhhhCCCCCcEEEeeCCCCccc-cCCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCcccc-
Q 009053 7 EIQINPYTFSKMTELRFLKFYGSENKCM-VSSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLW- 80 (545)
Q Consensus 7 ~~~~~~~~f~~m~~Lr~L~l~~~~~~~l-~~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~- 80 (545)
...+.+.+|+++++|++|++++|....+ |..+..++ +|++|+++++.++.+ ...+++|++|++++|.+..++
T Consensus 69 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 146 (606)
T 3t6q_A 69 IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK--ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL 146 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT--TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC
T ss_pred cceeChhhccCccccCeeeCCCCcccccChhhhcccc--cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCc
Confidence 3456677777788888888877655444 45666665 777777777766664 445566666666666666542
Q ss_pred ccccCCCCccEEEecCCCCCCCCCC-CCCCC-------------------------------------------------
Q 009053 81 DDVQNLVNLKKIDLWYSKLLTKLPD-LSLAQ------------------------------------------------- 110 (545)
Q Consensus 81 ~~~~~l~~L~~LdLs~~~~~~~~p~-l~~l~------------------------------------------------- 110 (545)
..+..+++|+.|++++|.+....+. ++.++
T Consensus 147 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 226 (606)
T 3t6q_A 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226 (606)
T ss_dssp CTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCE
T ss_pred ccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccc
Confidence 2222355666666655544332221 22222
Q ss_pred ----------------------------CccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCcc-CCccccE
Q 009053 111 ----------------------------NLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI-QSKYLKR 161 (545)
Q Consensus 111 ----------------------------~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~ 161 (545)
+|+.|++++|......+..++.+++|++|++++|. ++.+|..+ .+++|+.
T Consensus 227 l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~ 305 (606)
T 3t6q_A 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKK 305 (606)
T ss_dssp EEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCE
T ss_pred hhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCE
Confidence 23334444433322233346778888888888874 55777766 7888888
Q ss_pred EeecCCCCCCCCCccccCC--ccEEEcccccCc-ccCcc-ccCCCCCCEEEecCCCCCccc--cccccCCCCCcEEEEeC
Q 009053 162 LVLRGCSNLKNFPEISSSG--IHRLDLTHVGIK-ELPSS-IDRLSKLDTLKIHDCTSLESL--PSSLSMFKSLTSLEIIY 235 (545)
Q Consensus 162 L~L~~c~~l~~~p~~~~~~--L~~L~l~~~~i~-~lp~~-~~~l~~L~~L~L~~~~~l~~l--p~~l~~l~~L~~L~Ls~ 235 (545)
|++++|......|...... |+.|++++|.+. .+|.. +..+++|+.|++++|...+.. +..+..+++|++|++++
T Consensus 306 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 385 (606)
T 3t6q_A 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385 (606)
T ss_dssp EECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCS
T ss_pred EECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCC
Confidence 8888875444334333322 888888888776 45543 777888888888887766544 66677888888888888
Q ss_pred CCCCCccccccCCCCCCcEEEecCccCcCC--CccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccc-
Q 009053 236 CPKLKRLPDELGNLKALEELRVEGTAIRRP--PESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQT- 312 (545)
Q Consensus 236 c~~~~~lp~~l~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~- 312 (545)
|...+..|..++.+++|+.|++++|.+... +..+..+++|+.|++++|......|..+..+++|++|++++|+..+.
T Consensus 386 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 465 (606)
T 3t6q_A 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465 (606)
T ss_dssp CSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGE
T ss_pred CcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccc
Confidence 877777777788888888888888887744 23477788888888888833335566677888888888888876542
Q ss_pred cC-----CCCCCccEEeccCCCCCCccCCcccC-CcccEEEEcCC
Q 009053 313 LP-----ELPCNLHDLDASGCTSLEALPASLSS-KFYLSVDLSNC 351 (545)
Q Consensus 313 ip-----~~~~sL~~L~l~~c~~L~~l~~~~~~-~~~~~l~l~~C 351 (545)
+| ..+++|+.|++++|...+..+..+.. ..++.|++++|
T Consensus 466 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 22 12467888888887433333333221 23457777776
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=263.38 Aligned_cols=341 Identities=13% Similarity=0.142 Sum_probs=239.0
Q ss_pred cccccChhhhhCCCCCcEEEeeCCCCccc-cCCcCCCCCCCccEEEeCCCCCCcc-cccccCccEEEcCCCCCcc--ccc
Q 009053 6 SEIQINPYTFSKMTELRFLKFYGSENKCM-VSSLEGVPFTEVRYFEWHQYPLKTL-DIHAENLVSLKMPGSKVKQ--LWD 81 (545)
Q Consensus 6 ~~~~~~~~~f~~m~~Lr~L~l~~~~~~~l-~~~l~~l~~~~Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~~~l~~--l~~ 81 (545)
....+.+.+|.++++||+|++++|....+ |..+..++ +|++|++++|.++.+ ...+++|++|++++|.++. +|.
T Consensus 32 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~N~l~~~~~p~ 109 (520)
T 2z7x_B 32 YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ--ELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICK 109 (520)
T ss_dssp CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT--TCCEEECCSSCCCEEECCCCCCCSEEECCSSCCSSCCCCG
T ss_pred cccccChhhccccccccEEecCCCccCCcChHHhhccc--CCCEEecCCCceeecCccccCCccEEeccCCccccccchh
Confidence 34456778888899999999988766665 56788887 899999998888887 4478888999999888885 567
Q ss_pred cccCCCCccEEEecCCCCCCCCCCCCCCCCc--cEEEeeCCCC--CccccccccC-------------------------
Q 009053 82 DVQNLVNLKKIDLWYSKLLTKLPDLSLAQNL--EILDLGGCSS--LTETHSSIQY------------------------- 132 (545)
Q Consensus 82 ~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L--~~L~L~~c~~--l~~~~~~i~~------------------------- 132 (545)
.++.+++|+.|++++|.+.. .++..+++| +.|++++|.. ....|..+..
T Consensus 110 ~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~ 187 (520)
T 2z7x_B 110 EFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187 (520)
T ss_dssp GGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCT
T ss_pred hhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhh
Confidence 88888888888888887654 345556666 7777777765 3333433333
Q ss_pred -CCCCCEEEecCCC-------CCCccCC---------------------------ccCCccccEEeecCCCCCCCCCccc
Q 009053 133 -LNKLEVLDLDRCE-------SLRTLPT---------------------------SIQSKYLKRLVLRGCSNLKNFPEIS 177 (545)
Q Consensus 133 -l~~L~~L~L~~c~-------~l~~lp~---------------------------~~~l~~L~~L~L~~c~~l~~~p~~~ 177 (545)
+++|+.|++++|. ..+.+|. ....++|+.|++++|...+.+|...
T Consensus 188 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 267 (520)
T 2z7x_B 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRD 267 (520)
T ss_dssp TCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCC
T ss_pred cccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccch
Confidence 3333333333332 0000000 0011244444444443222333322
Q ss_pred -----cC----------------------------CccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccC
Q 009053 178 -----SS----------------------------GIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSM 224 (545)
Q Consensus 178 -----~~----------------------------~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~ 224 (545)
.. .++.|+++++.+..++. ...+++|+.|++++|...+.+|..+..
T Consensus 268 ~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 346 (520)
T 2z7x_B 268 FDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGH 346 (520)
T ss_dssp CCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCC
T ss_pred hhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhcc
Confidence 11 15666666666554431 267899999999999988888999999
Q ss_pred CCCCcEEEEeCCCCCC--ccccccCCCCCCcEEEecCccCcC-CCcc-CCCCCCCcEEeccCCcCCCcchhhhcCCCCCC
Q 009053 225 FKSLTSLEIIYCPKLK--RLPDELGNLKALEELRVEGTAIRR-PPES-LGQLSSLQILSLSDNSNLERAPESIRHLSKLT 300 (545)
Q Consensus 225 l~~L~~L~Ls~c~~~~--~lp~~l~~l~~L~~L~L~~n~l~~-lp~~-l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~ 300 (545)
+++|+.|++++|...+ .+|..++.+++|++|++++|.++. +|.. +..+++|+.|++++|...+.+|..+. ++|+
T Consensus 347 l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~ 424 (520)
T 2z7x_B 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIK 424 (520)
T ss_dssp CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCC
T ss_pred CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCC
Confidence 9999999999998876 677889999999999999999997 7764 78899999999999944456666553 7999
Q ss_pred EEeccCCcCccccCC---CCCCccEEeccCCCCCCccCCc-ccC-CcccEEEEcCCCCCC
Q 009053 301 SLFISDCKMLQTLPE---LPCNLHDLDASGCTSLEALPAS-LSS-KFYLSVDLSNCLKLD 355 (545)
Q Consensus 301 ~L~L~~c~~l~~ip~---~~~sL~~L~l~~c~~L~~l~~~-~~~-~~~~~l~l~~C~~L~ 355 (545)
.|++++|+. +.+|. ..++|+.|++++| .++.+|.. ... ..++.+++++++--.
T Consensus 425 ~L~Ls~N~l-~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 425 VLDLHSNKI-KSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp EEECCSSCC-CCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECCCCcc-cccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCCcc
Confidence 999999965 47776 3478999999998 56778765 221 234688998876443
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=9.1e-28 Score=244.30 Aligned_cols=303 Identities=19% Similarity=0.269 Sum_probs=245.0
Q ss_pred hhhhCCCCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc--cccccCccEEEcCCCCCccccccccCCCCcc
Q 009053 13 YTFSKMTELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL--DIHAENLVSLKMPGSKVKQLWDDVQNLVNLK 90 (545)
Q Consensus 13 ~~f~~m~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~ 90 (545)
..+..+++|+.|+++++....++ ++..++ +|++|+++++.++.+ ...+++|++|++++|.++.++ .+..+++|+
T Consensus 38 ~~~~~l~~L~~L~l~~~~i~~~~-~~~~~~--~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~ 113 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKVASIQ-GIEYLT--NLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLR 113 (347)
T ss_dssp ECHHHHTTCSEEECCSSCCCCCT-TGGGCT--TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCS
T ss_pred ccchhcccccEEEEeCCccccch-hhhhcC--CccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCC
Confidence 34668899999999987766666 478887 999999999999888 677899999999999999875 589999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCCC
Q 009053 91 KIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSNL 170 (545)
Q Consensus 91 ~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l 170 (545)
+|++++|.+.. ++.+..+++|+.|++++|.....++. +..+++|++|++++|. +..++....+++|+.|++++|. +
T Consensus 114 ~L~l~~n~i~~-~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~n~-l 189 (347)
T 4fmz_A 114 ELYLNEDNISD-ISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTPIANLTDLYSLSLNYNQ-I 189 (347)
T ss_dssp EEECTTSCCCC-CGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECTTSC-C
T ss_pred EEECcCCcccC-chhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchhhccCCCCCEEEccCCc-c
Confidence 99999988654 45588999999999999977776554 8899999999999975 4445544488999999999975 4
Q ss_pred CCCCccccCC-ccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCC
Q 009053 171 KNFPEISSSG-IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNL 249 (545)
Q Consensus 171 ~~~p~~~~~~-L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l 249 (545)
..++...... |+.|+++++.+..++. +..+++|+.|++++|..... +. +..+++|++|++++|.... + ..+..+
T Consensus 190 ~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l 264 (347)
T 4fmz_A 190 EDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I-NAVKDL 264 (347)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTC
T ss_pred cccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-hhHhcC
Confidence 4555433222 9999999999988876 88899999999999876543 33 7889999999999987654 3 468889
Q ss_pred CCCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccccC-CCCCCccEEeccCC
Q 009053 250 KALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLP-ELPCNLHDLDASGC 328 (545)
Q Consensus 250 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip-~~~~sL~~L~l~~c 328 (545)
++|+.|++++|.++.++ .+..+++|+.|++++|......|..+..+++|+.|++++|+.....| ...++|+.|++++|
T Consensus 265 ~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQ 343 (347)
T ss_dssp TTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC
T ss_pred CCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhh
Confidence 99999999999998874 57888999999999994444667788999999999999998554444 23578888888887
Q ss_pred C
Q 009053 329 T 329 (545)
Q Consensus 329 ~ 329 (545)
+
T Consensus 344 ~ 344 (347)
T 4fmz_A 344 V 344 (347)
T ss_dssp -
T ss_pred c
Confidence 4
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=3.6e-28 Score=256.54 Aligned_cols=330 Identities=18% Similarity=0.169 Sum_probs=235.5
Q ss_pred CCCcEEEeeCCCCccc-cCCcCCCCCCCccEEEeCCCCCC-cc----cccccCccEEEcCCCCCccc-cccccCCCCccE
Q 009053 19 TELRFLKFYGSENKCM-VSSLEGVPFTEVRYFEWHQYPLK-TL----DIHAENLVSLKMPGSKVKQL-WDDVQNLVNLKK 91 (545)
Q Consensus 19 ~~Lr~L~l~~~~~~~l-~~~l~~l~~~~Lr~L~l~~~~l~-~l----~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~ 91 (545)
++||+|++++|....+ |..+..++ +|++|+++++.+. .+ ...+++|++|++++|.+..+ |..+..+++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQ--DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCT--TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCccCcCChhHhccCc--cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 7899999998877666 57788887 9999999999775 33 45678999999999998866 678899999999
Q ss_pred EEecCCCCCCCCC-C--CCCCCCccEEEeeCCCCCcccccc-ccCCCCCCEEEecCCCCCCccCCcc-C--CccccEEee
Q 009053 92 IDLWYSKLLTKLP-D--LSLAQNLEILDLGGCSSLTETHSS-IQYLNKLEVLDLDRCESLRTLPTSI-Q--SKYLKRLVL 164 (545)
Q Consensus 92 LdLs~~~~~~~~p-~--l~~l~~L~~L~L~~c~~l~~~~~~-i~~l~~L~~L~L~~c~~l~~lp~~~-~--l~~L~~L~L 164 (545)
|+|++|.+....+ . +..+++|++|++++|......|.. ++.+++|++|++++|......+..+ . ..+|+.|++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 9999998765433 2 788899999999998766665655 7889999999999987665555544 3 378888998
Q ss_pred cCCCCCCCCCccc-c----------CCccEEEcccccCcc-cCccccC---CCCCCEEEecCCCCCcccc----------
Q 009053 165 RGCSNLKNFPEIS-S----------SGIHRLDLTHVGIKE-LPSSIDR---LSKLDTLKIHDCTSLESLP---------- 219 (545)
Q Consensus 165 ~~c~~l~~~p~~~-~----------~~L~~L~l~~~~i~~-lp~~~~~---l~~L~~L~L~~~~~l~~lp---------- 219 (545)
++|.... ++... . ..|+.|++++|.+.+ .|..+.. .++|+.|++++|...+...
T Consensus 188 ~~n~l~~-~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (455)
T 3v47_A 188 SSITLQD-MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266 (455)
T ss_dssp TTCBCTT-CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred ccCcccc-cchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence 8875433 32211 1 128899999988874 3433332 3677778877765433211
Q ss_pred ccc--cCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCC-CccCCCCCCCcEEeccCCcCCCcc-hhhhcC
Q 009053 220 SSL--SMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRP-PESLGQLSSLQILSLSDNSNLERA-PESIRH 295 (545)
Q Consensus 220 ~~l--~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~l-p~~l~~ 295 (545)
..+ ...++|+.|++++|...+..|..++.+++|++|++++|.++.+ |..+..+++|+.|+|++| .++.+ |..+..
T Consensus 267 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 345 (455)
T 3v47_A 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFEN 345 (455)
T ss_dssp TTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTT
T ss_pred cccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcC
Confidence 011 1235788888888887777777888888888888888888755 557778888888888888 55544 566778
Q ss_pred CCCCCEEeccCCcCccccCCC---CCCccEEeccCCCCCCccCCccc--CCcccEEEEcCCCC
Q 009053 296 LSKLTSLFISDCKMLQTLPEL---PCNLHDLDASGCTSLEALPASLS--SKFYLSVDLSNCLK 353 (545)
Q Consensus 296 l~~L~~L~L~~c~~l~~ip~~---~~sL~~L~l~~c~~L~~l~~~~~--~~~~~~l~l~~C~~ 353 (545)
+++|+.|++++|......|.. .++|++|++++| .++.++.... ...++.+++++++-
T Consensus 346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCc
Confidence 888888888888765544542 367888888876 4555554321 12345777776543
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=7.5e-28 Score=249.11 Aligned_cols=300 Identities=16% Similarity=0.172 Sum_probs=248.6
Q ss_pred CCCCCcEEEeeCCCCccccCC-cCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCcccc-ccccCCCCcc
Q 009053 17 KMTELRFLKFYGSENKCMVSS-LEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLW-DDVQNLVNLK 90 (545)
Q Consensus 17 ~m~~Lr~L~l~~~~~~~l~~~-l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~ 90 (545)
.+.+||.|+++++....+|.. +..++ +|++|+++++.+..+ ...+++|++|++++|.++.++ ..+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFR--QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCC--CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccc--cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 468999999999887888865 67787 999999999998877 467889999999999999875 4579999999
Q ss_pred EEEecCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCC
Q 009053 91 KIDLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSN 169 (545)
Q Consensus 91 ~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~ 169 (545)
.|+|++|.+....+. ++.+++|++|++++|......+..++.+++|++|++++|. ++.++ ...+++|+.|++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~l~~L~~L~l~~n~- 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD-LSLIPSLFHANVSYNL- 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC-GGGCTTCSEEECCSSC-
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc-cccccccceeeccccc-
Confidence 999999987754444 6889999999999987766666778999999999999975 44443 2378899999999864
Q ss_pred CCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCC
Q 009053 170 LKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNL 249 (545)
Q Consensus 170 l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l 249 (545)
+..++.. ..++.|++++|.+..+|... .++|+.|++++|...+. ..+..+++|++|++++|...+..|..++.+
T Consensus 198 l~~~~~~--~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 198 LSTLAIP--IAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp CSEEECC--SSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ccccCCC--CcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence 3333211 12999999999999887644 57999999999876653 468899999999999998888889999999
Q ss_pred CCCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccccCCCCCCccEEeccCC
Q 009053 250 KALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLPELPCNLHDLDASGC 328 (545)
Q Consensus 250 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip~~~~sL~~L~l~~c 328 (545)
++|+.|++++|.++.+|..+..+++|+.|++++| .+..+|..+..+++|+.|++++|+....-...+++|+.|++++|
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 272 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHN 349 (390)
T ss_dssp SSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSS
T ss_pred ccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCC
Confidence 9999999999999998888889999999999999 88889988999999999999998754332344567788887776
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=4.6e-28 Score=255.67 Aligned_cols=326 Identities=16% Similarity=0.177 Sum_probs=258.5
Q ss_pred cccccChhhhhCCCCCcEEEeeCCCCc-cc-cCCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCcc-
Q 009053 6 SEIQINPYTFSKMTELRFLKFYGSENK-CM-VSSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQ- 78 (545)
Q Consensus 6 ~~~~~~~~~f~~m~~Lr~L~l~~~~~~-~l-~~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~- 78 (545)
....+.+.+|++|++||+|++++|... .+ +..+..++ +|++|++++|.+..+ ...+++|++|++++|.++.
T Consensus 41 ~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 118 (455)
T 3v47_A 41 SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS--SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA 118 (455)
T ss_dssp CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCT--TCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTH
T ss_pred ccCcCChhHhccCccccEEECcCCcccceECcccccccc--cCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCcc
Confidence 345567889999999999999987654 55 46788897 999999999998877 5568999999999999985
Q ss_pred cccc--ccCCCCccEEEecCCCCCCCCCC--CCCCCCccEEEeeCCCCCccccccccCC--CCCCEEEecCCCCCCccCC
Q 009053 79 LWDD--VQNLVNLKKIDLWYSKLLTKLPD--LSLAQNLEILDLGGCSSLTETHSSIQYL--NKLEVLDLDRCESLRTLPT 152 (545)
Q Consensus 79 l~~~--~~~l~~L~~LdLs~~~~~~~~p~--l~~l~~L~~L~L~~c~~l~~~~~~i~~l--~~L~~L~L~~c~~l~~lp~ 152 (545)
++.. +..+++|+.|+|++|.+....|. +..+++|++|++++|......+..+..+ .+|+.|++++|.....-+.
T Consensus 119 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~ 198 (455)
T 3v47_A 119 VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198 (455)
T ss_dssp HHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTT
T ss_pred ccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchh
Confidence 3444 89999999999999999887775 7899999999999998777777777665 7899999999764432221
Q ss_pred ---------ccCCccccEEeecCCCCCCCCCccc-----cCCccEEEcccccCcccC-----------cccc--CCCCCC
Q 009053 153 ---------SIQSKYLKRLVLRGCSNLKNFPEIS-----SSGIHRLDLTHVGIKELP-----------SSID--RLSKLD 205 (545)
Q Consensus 153 ---------~~~l~~L~~L~L~~c~~l~~~p~~~-----~~~L~~L~l~~~~i~~lp-----------~~~~--~l~~L~ 205 (545)
...+++|+.|++++|...+..|... ...++.|+++++...... ..+. ..++|+
T Consensus 199 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 278 (455)
T 3v47_A 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278 (455)
T ss_dssp CTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCC
T ss_pred hccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCce
Confidence 1256889999999987554443322 123889999887544311 1111 246899
Q ss_pred EEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCC-CccCCCCCCCcEEeccCCc
Q 009053 206 TLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRP-PESLGQLSSLQILSLSDNS 284 (545)
Q Consensus 206 ~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~ 284 (545)
.|++++|...+..|..+..+++|++|++++|...+..|..++.+++|++|++++|.++.+ |..+..+++|+.|+|++|
T Consensus 279 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N- 357 (455)
T 3v47_A 279 TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN- 357 (455)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS-
T ss_pred EEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC-
Confidence 999999998888888899999999999999998888888999999999999999999866 567889999999999999
Q ss_pred CCCc-chhhhcCCCCCCEEeccCCcCccccCC----CCCCccEEeccCCCCCCccC
Q 009053 285 NLER-APESIRHLSKLTSLFISDCKMLQTLPE----LPCNLHDLDASGCTSLEALP 335 (545)
Q Consensus 285 ~~~~-lp~~l~~l~~L~~L~L~~c~~l~~ip~----~~~sL~~L~l~~c~~L~~l~ 335 (545)
.++. .|..+..+++|++|++++|+.. .+|. ..++|+.|++++|+.-.+.|
T Consensus 358 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 358 HIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccccChhhccccccccEEECCCCccc-cCCHhHhccCCcccEEEccCCCcccCCC
Confidence 5664 4778999999999999998754 4543 34689999999986544433
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=4e-27 Score=249.53 Aligned_cols=317 Identities=18% Similarity=0.240 Sum_probs=196.1
Q ss_pred CCCCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc--cccccCccEEEcCCCCCccccccccCCCCccEEEe
Q 009053 17 KMTELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL--DIHAENLVSLKMPGSKVKQLWDDVQNLVNLKKIDL 94 (545)
Q Consensus 17 ~m~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdL 94 (545)
.+++||.|+++++....+| ++..++ +|++|+++++.++.+ ...+++|++|+++++.+..++. +..+++|+.|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~-~~~~l~--~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSID-GVEYLN--NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCCT-TGGGCT--TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccCc-chhhhc--CCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence 3456777777766555555 366665 777777777777766 5566777777777777776665 777777777777
Q ss_pred cCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCCCCCCC
Q 009053 95 WYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSNLKNFP 174 (545)
Q Consensus 95 s~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p 174 (545)
++|.+.. ++.+..+++|++|++++|.. ..++ .++.+++|+.|++.+ ....++....+++|+.|++++|. +..++
T Consensus 120 ~~n~l~~-~~~~~~l~~L~~L~l~~n~l-~~~~-~~~~l~~L~~L~l~~--~~~~~~~~~~l~~L~~L~l~~n~-l~~~~ 193 (466)
T 1o6v_A 120 FNNQITD-IDPLKNLTNLNRLELSSNTI-SDIS-ALSGLTSLQQLSFGN--QVTDLKPLANLTTLERLDISSNK-VSDIS 193 (466)
T ss_dssp CSSCCCC-CGGGTTCTTCSEEEEEEEEE-CCCG-GGTTCTTCSEEEEEE--SCCCCGGGTTCTTCCEEECCSSC-CCCCG
T ss_pred CCCCCCC-ChHHcCCCCCCEEECCCCcc-CCCh-hhccCCcccEeecCC--cccCchhhccCCCCCEEECcCCc-CCCCh
Confidence 7775544 34477777777777777643 3333 366677777777753 23333333366777777777754 34444
Q ss_pred ccccCC-ccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCc
Q 009053 175 EISSSG-IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALE 253 (545)
Q Consensus 175 ~~~~~~-L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~ 253 (545)
....-. |+.|++++|.+.++++ ++.+++|+.|++++|.... ++ .+..+++|+.|++++|...+..+ +..+++|+
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 268 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-IG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-ch-hhhcCCCCCEEECCCCccccchh--hhcCCCCC
Confidence 322211 7777777777766654 5667777777777765433 22 35666777777777766554433 66677777
Q ss_pred EEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccccC-CCCCCccEEeccCCCCCC
Q 009053 254 ELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLP-ELPCNLHDLDASGCTSLE 332 (545)
Q Consensus 254 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip-~~~~sL~~L~l~~c~~L~ 332 (545)
.|++++|.++.++. +..+++|+.|++++| .+..++. +..+++|+.|++++|+..+..| ..+++|+.|++++| .++
T Consensus 269 ~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~ 344 (466)
T 1o6v_A 269 ELKLGANQISNISP-LAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN-KVS 344 (466)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS-CCC
T ss_pred EEECCCCccCcccc-ccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC-ccC
Confidence 77777777766654 666777777777777 5555554 6667777777777765443322 13356777777766 344
Q ss_pred ccCCcccCCcccEEEEcCCC
Q 009053 333 ALPASLSSKFYLSVDLSNCL 352 (545)
Q Consensus 333 ~l~~~~~~~~~~~l~l~~C~ 352 (545)
.++.......++.|++++|.
T Consensus 345 ~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 345 DVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp CCGGGTTCTTCCEEECCSSC
T ss_pred CchhhccCCCCCEEeCCCCc
Confidence 44321111223466666664
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2e-27 Score=255.34 Aligned_cols=322 Identities=17% Similarity=0.197 Sum_probs=251.8
Q ss_pred CCCcEEEeeCCCCcccc-CCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCccccccccCCCCccEEE
Q 009053 19 TELRFLKFYGSENKCMV-SSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLWDDVQNLVNLKKID 93 (545)
Q Consensus 19 ~~Lr~L~l~~~~~~~l~-~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~Ld 93 (545)
++|+.|++++|....++ ..+..++ +|++|++++|.++.+ ...+++|++|+|++|+++.+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLS--KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCT--TCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccc--cccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEe
Confidence 78999999998777666 5788887 999999999998887 45778999999999999999877 899999999
Q ss_pred ecCCCCCC-CCC-CCCCCCCccEEEeeCCCCCccccccccCCCCC--CEEEecCCCC--CCccCCcc-------------
Q 009053 94 LWYSKLLT-KLP-DLSLAQNLEILDLGGCSSLTETHSSIQYLNKL--EVLDLDRCES--LRTLPTSI------------- 154 (545)
Q Consensus 94 Ls~~~~~~-~~p-~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L--~~L~L~~c~~--l~~lp~~~------------- 154 (545)
|++|.+.. .+| .++.+++|++|++++|.... ..+..+++| +.|++++|.. ....|..+
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 99998876 355 48899999999999986544 356677777 9999999876 33334333
Q ss_pred --------------CCccccEEeecCCCC-------------CCCCCc----------------------cccCCccEEE
Q 009053 155 --------------QSKYLKRLVLRGCSN-------------LKNFPE----------------------ISSSGIHRLD 185 (545)
Q Consensus 155 --------------~l~~L~~L~L~~c~~-------------l~~~p~----------------------~~~~~L~~L~ 185 (545)
.+++|+.|++++|.. +..++. .....|+.|+
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 366777777777540 000000 0011388899
Q ss_pred cccccCc-ccCccc-----cCCCCCCEEEecCCCCCccccc-------------------------c-ccCCCCCcEEEE
Q 009053 186 LTHVGIK-ELPSSI-----DRLSKLDTLKIHDCTSLESLPS-------------------------S-LSMFKSLTSLEI 233 (545)
Q Consensus 186 l~~~~i~-~lp~~~-----~~l~~L~~L~L~~~~~l~~lp~-------------------------~-l~~l~~L~~L~L 233 (545)
+++|.+. .+|..+ +.+++|+.+++++|.. .+|. . ...+++|++|++
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 331 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC
T ss_pred eecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEe
Confidence 9999888 788887 7777777777766654 3331 0 167899999999
Q ss_pred eCCCCCCccccccCCCCCCcEEEecCccCcC---CCccCCCCCCCcEEeccCCcCCCc-chhh-hcCCCCCCEEeccCCc
Q 009053 234 IYCPKLKRLPDELGNLKALEELRVEGTAIRR---PPESLGQLSSLQILSLSDNSNLER-APES-IRHLSKLTSLFISDCK 308 (545)
Q Consensus 234 s~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~L~~n~~~~~-lp~~-l~~l~~L~~L~L~~c~ 308 (545)
++|...+.+|..++.+++|++|++++|.++. +|..++.+++|+.|++++| .+.. +|.. +..+++|+.|++++|+
T Consensus 332 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred ECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhccCccCCEEECcCCC
Confidence 9999988899999999999999999999985 4567899999999999999 6665 8865 7889999999999999
Q ss_pred CccccCCC-CCCccEEeccCCCCCCccCCcccC-CcccEEEEcCC
Q 009053 309 MLQTLPEL-PCNLHDLDASGCTSLEALPASLSS-KFYLSVDLSNC 351 (545)
Q Consensus 309 ~l~~ip~~-~~sL~~L~l~~c~~L~~l~~~~~~-~~~~~l~l~~C 351 (545)
..+.+|.. +++|+.|++++| .++.+|..... ..++.|++++|
T Consensus 411 l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 411 LTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp CCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC
Confidence 87777754 479999999998 56688764431 33568999987
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=7.1e-27 Score=265.25 Aligned_cols=310 Identities=16% Similarity=0.213 Sum_probs=166.8
Q ss_pred ccChhhhhCCCCCcEEEeeCC-CCccc-cCCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCcc-ccc
Q 009053 9 QINPYTFSKMTELRFLKFYGS-ENKCM-VSSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQ-LWD 81 (545)
Q Consensus 9 ~~~~~~f~~m~~Lr~L~l~~~-~~~~l-~~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~-l~~ 81 (545)
.+.+.+|+++++||+|++++| ....+ |..+..++ +|++|++++|.+..+ ...+++|++|+|++|.+.. ++.
T Consensus 38 ~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~ 115 (844)
T 3j0a_A 38 TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP--NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK 115 (844)
T ss_dssp EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCT--TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCST
T ss_pred ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCC--CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccccc
Confidence 344455555555555555554 22333 34455554 555555555555544 3345555555555555553 232
Q ss_pred c--ccCCCCccEEEecCCCCCCCCC--CCCCCCCccEEEeeCCCCCccccccccCC--CCCCEEEecCCCCCCccCCcc-
Q 009053 82 D--VQNLVNLKKIDLWYSKLLTKLP--DLSLAQNLEILDLGGCSSLTETHSSIQYL--NKLEVLDLDRCESLRTLPTSI- 154 (545)
Q Consensus 82 ~--~~~l~~L~~LdLs~~~~~~~~p--~l~~l~~L~~L~L~~c~~l~~~~~~i~~l--~~L~~L~L~~c~~l~~lp~~~- 154 (545)
. +..+++|+.|+|++|.+....+ .++.+++|++|++++|......+..++.+ ++|+.|++++|......|..+
T Consensus 116 ~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~ 195 (844)
T 3j0a_A 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195 (844)
T ss_dssp TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC
T ss_pred CccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchh
Confidence 2 5555555555555555544332 25555555555555554444444444444 555555555554444333332
Q ss_pred CCc------cccEEeecCCCCCCCCCccc----------------------------------------cCCccEEEccc
Q 009053 155 QSK------YLKRLVLRGCSNLKNFPEIS----------------------------------------SSGIHRLDLTH 188 (545)
Q Consensus 155 ~l~------~L~~L~L~~c~~l~~~p~~~----------------------------------------~~~L~~L~l~~ 188 (545)
.++ +|+.|++++|......+... ...++.|++++
T Consensus 196 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~ 275 (844)
T 3j0a_A 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH 275 (844)
T ss_dssp SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTT
T ss_pred hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCC
Confidence 222 26666666653221111100 01266666666
Q ss_pred ccCccc-CccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCC-
Q 009053 189 VGIKEL-PSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPP- 266 (545)
Q Consensus 189 ~~i~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp- 266 (545)
|.+.++ |..+..+++|+.|++++|...+..|..+..+++|++|++++|...+..|..++.+++|+.|++++|.+..++
T Consensus 276 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355 (844)
T ss_dssp CCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred CcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh
Confidence 666654 344566677777777776666555666666777777777776665555666667777777777777666554
Q ss_pred ccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccccCCCCCCccEEecc
Q 009053 267 ESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLPELPCNLHDLDAS 326 (545)
Q Consensus 267 ~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip~~~~sL~~L~l~ 326 (545)
..+..+++|+.|+|++| .++.++. +++|+.|++++|+. ..+|....+++.|+++
T Consensus 356 ~~~~~l~~L~~L~Ls~N-~l~~i~~----~~~L~~L~l~~N~l-~~l~~~~~~l~~L~ls 409 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRDN-ALTTIHF----IPSIPDIFLSGNKL-VTLPKINLTANLIHLS 409 (844)
T ss_dssp SCSCSCCCCCEEEEETC-CSCCCSS----CCSCSEEEEESCCC-CCCCCCCTTCCEEECC
T ss_pred hhhcCCCCCCEEECCCC-CCCcccC----CCCcchhccCCCCc-ccccccccccceeecc
Confidence 34566677777777766 5544432 55566666665543 2444433333333333
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=7.6e-28 Score=261.23 Aligned_cols=136 Identities=21% Similarity=0.292 Sum_probs=91.9
Q ss_pred cccChhhhhCCCCCcEEEeeCCCCcccc-CCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCccccc-
Q 009053 8 IQINPYTFSKMTELRFLKFYGSENKCMV-SSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLWD- 81 (545)
Q Consensus 8 ~~~~~~~f~~m~~Lr~L~l~~~~~~~l~-~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~~- 81 (545)
..+.+.+|.++++||+|++++|....++ ..+..++ +|++|+++++.++.+ ...+++|++|++++|+++.++.
T Consensus 41 ~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 118 (570)
T 2z63_A 41 RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS--HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118 (570)
T ss_dssp CEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCT--TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC
T ss_pred CccChhHhhCCCCceEEECCCCcCCccCcccccCch--hCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCc
Confidence 3455667777778888887776555554 4567776 778888877777666 3466777778877777777664
Q ss_pred cccCCCCccEEEecCCCCCC-CCCC-CCCCCCccEEEeeCCCCCccccccccCCCCC----CEEEecCCC
Q 009053 82 DVQNLVNLKKIDLWYSKLLT-KLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKL----EVLDLDRCE 145 (545)
Q Consensus 82 ~~~~l~~L~~LdLs~~~~~~-~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L----~~L~L~~c~ 145 (545)
.+..+++|++|++++|.+.. .+|. ++.+++|++|++++|......+..++.+++| +.|++++|.
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC
Confidence 56777777888887776655 3443 6777777777777776544444555555555 566666553
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.8e-27 Score=256.72 Aligned_cols=339 Identities=19% Similarity=0.223 Sum_probs=207.4
Q ss_pred cccccChhhhhCCCCCcEEEeeCCCCcccc-CCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCcc--
Q 009053 6 SEIQINPYTFSKMTELRFLKFYGSENKCMV-SSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQ-- 78 (545)
Q Consensus 6 ~~~~~~~~~f~~m~~Lr~L~l~~~~~~~l~-~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~-- 78 (545)
+...+.+.+|++|++||+|++++|....++ ..+..++ +|++|+++++.++.+ ...+++|++|++++|.++.
T Consensus 63 ~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 140 (570)
T 2z63_A 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS--SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT--TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC
T ss_pred cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc--ccccccccccccccCCCccccccccccEEecCCCccceec
Confidence 345577889999999999999998776666 6788887 999999999988877 4577899999999999885
Q ss_pred ccccccCCCCccEEEecCCCCCCCCCC-CCCC---------------------------CCccEEEeeCCC---------
Q 009053 79 LWDDVQNLVNLKKIDLWYSKLLTKLPD-LSLA---------------------------QNLEILDLGGCS--------- 121 (545)
Q Consensus 79 l~~~~~~l~~L~~LdLs~~~~~~~~p~-l~~l---------------------------~~L~~L~L~~c~--------- 121 (545)
+|..+.++++|+.|++++|.+....+. ++.+ .+|+.|++.+|.
T Consensus 141 lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 220 (570)
T 2z63_A 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220 (570)
T ss_dssp CCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHH
T ss_pred ChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhh
Confidence 688899999999999998876443221 1111 134555554431
Q ss_pred -------------------------------------------------CCccccccccCCCCCCEEEecCCCCCCccCC
Q 009053 122 -------------------------------------------------SLTETHSSIQYLNKLEVLDLDRCESLRTLPT 152 (545)
Q Consensus 122 -------------------------------------------------~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~ 152 (545)
....++..+..+++|++|++++|. +..+|.
T Consensus 221 ~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~ 299 (570)
T 2z63_A 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKD 299 (570)
T ss_dssp HHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSCCB
T ss_pred hcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhhhh
Confidence 011123344456667777776653 335555
Q ss_pred cc-CCccccEEeecCCCCCCCCCcccc----------------------CCccEEEcccccCccc---CccccCCCCCCE
Q 009053 153 SI-QSKYLKRLVLRGCSNLKNFPEISS----------------------SGIHRLDLTHVGIKEL---PSSIDRLSKLDT 206 (545)
Q Consensus 153 ~~-~l~~L~~L~L~~c~~l~~~p~~~~----------------------~~L~~L~l~~~~i~~l---p~~~~~l~~L~~ 206 (545)
.+ .+ +|+.|++++|.. ..+|.... ..|+.|++++|.+..+ |..+..+++|+.
T Consensus 300 ~~~~~-~L~~L~l~~n~~-~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 377 (570)
T 2z63_A 300 FSYNF-GWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377 (570)
T ss_dssp CCSCC-CCSEEEEESCBC-SSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCE
T ss_pred hhccC-CccEEeeccCcc-cccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCE
Confidence 44 34 566666655432 23333211 1256666666665544 345556666666
Q ss_pred EEecCCCCCccccccccCCCCCcEEEEeCCCCCCccc-cccCCCCCCcEEEecCccCcC-CCccCCCCCCCcEEeccCCc
Q 009053 207 LKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLP-DELGNLKALEELRVEGTAIRR-PPESLGQLSSLQILSLSDNS 284 (545)
Q Consensus 207 L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp-~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~ 284 (545)
|++++|...+ ++..+..+++|++|++++|...+..| ..+.++++|++|++++|.+.. .|..+..+++|+.|++++|
T Consensus 378 L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n- 455 (570)
T 2z63_A 378 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN- 455 (570)
T ss_dssp EECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC-
T ss_pred EECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC-
Confidence 6666654333 33335666666666666665544433 345666666666666666653 3555666666666666666
Q ss_pred CCC--cchhhhcCCCCCCEEeccCCcCccccCCC---CCCccEEeccCCCCCCccCCc-cc-CCcccEEEEcCCC
Q 009053 285 NLE--RAPESIRHLSKLTSLFISDCKMLQTLPEL---PCNLHDLDASGCTSLEALPAS-LS-SKFYLSVDLSNCL 352 (545)
Q Consensus 285 ~~~--~lp~~l~~l~~L~~L~L~~c~~l~~ip~~---~~sL~~L~l~~c~~L~~l~~~-~~-~~~~~~l~l~~C~ 352 (545)
.+. .+|..+..+++|+.|++++|+..+..|.. .++|+.|++++| .++.++.. +. ...++.+++++++
T Consensus 456 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 332 46666666666666666666554444432 346666666665 33444322 11 0123456665543
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=3.6e-27 Score=255.87 Aligned_cols=317 Identities=16% Similarity=0.155 Sum_probs=237.8
Q ss_pred cccccChhhhhCCCCCcEEEeeCCCCccc-cCCcCCCCCCCccEEEeCCCCCCcc-cccccCccEEEcCCCCCcccc--c
Q 009053 6 SEIQINPYTFSKMTELRFLKFYGSENKCM-VSSLEGVPFTEVRYFEWHQYPLKTL-DIHAENLVSLKMPGSKVKQLW--D 81 (545)
Q Consensus 6 ~~~~~~~~~f~~m~~Lr~L~l~~~~~~~l-~~~l~~l~~~~Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~~~l~~l~--~ 81 (545)
....+.+.+|+++++||+|++++|....+ |..+..++ +|++|++++|.++.+ ...+++|++|++++|.++.++ .
T Consensus 63 ~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~ 140 (562)
T 3a79_B 63 SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ--DLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCK 140 (562)
T ss_dssp CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT--TCCEEECTTSCCCEECSCCCTTCSEEECCSSCCSBCCCCG
T ss_pred CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC--CCCEEECCCCcCCccCccccccCCEEECCCCCccccCchH
Confidence 34567778899999999999998877766 56788887 999999999999888 448889999999999998765 6
Q ss_pred cccCCCCccEEEecCCCCCCCCCCCCCCCCc--cEEEeeCCCC--CccccccccCC------------------------
Q 009053 82 DVQNLVNLKKIDLWYSKLLTKLPDLSLAQNL--EILDLGGCSS--LTETHSSIQYL------------------------ 133 (545)
Q Consensus 82 ~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L--~~L~L~~c~~--l~~~~~~i~~l------------------------ 133 (545)
.+.++++|+.|+|++|.+.. .++..+++| +.|++++|.. ....|..+..+
T Consensus 141 ~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~ 218 (562)
T 3a79_B 141 EFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN 218 (562)
T ss_dssp GGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEES
T ss_pred hhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhccc
Confidence 78899999999999987754 345555555 8888888765 33333333322
Q ss_pred --C-------------------------------------------------------CCCEEEecCCCCCCccCCcc--
Q 009053 134 --N-------------------------------------------------------KLEVLDLDRCESLRTLPTSI-- 154 (545)
Q Consensus 134 --~-------------------------------------------------------~L~~L~L~~c~~l~~lp~~~-- 154 (545)
+ +|++|++++|...+.+|..+
T Consensus 219 ~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~ 298 (562)
T 3a79_B 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT 298 (562)
T ss_dssp SEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCC
T ss_pred ccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhh
Confidence 2 44555555544333444332
Q ss_pred ----CC--------------------------ccccEEeecCCCCCCCCCc-cccCCccEEEcccccCcc-cCccccCCC
Q 009053 155 ----QS--------------------------KYLKRLVLRGCSNLKNFPE-ISSSGIHRLDLTHVGIKE-LPSSIDRLS 202 (545)
Q Consensus 155 ----~l--------------------------~~L~~L~L~~c~~l~~~p~-~~~~~L~~L~l~~~~i~~-lp~~~~~l~ 202 (545)
.+ .+|+.|++++|... ..+. .....|++|++++|.+.+ +|..++.++
T Consensus 299 ~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 377 (562)
T 3a79_B 299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI-HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLK 377 (562)
T ss_dssp CCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC-CCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCS
T ss_pred cccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc-cccCccCCCCceEEECCCCccccchhhhhcccC
Confidence 01 23555555554322 1111 111129999999999997 788899999
Q ss_pred CCCEEEecCCCCCc--cccccccCCCCCcEEEEeCCCCCCcccc-ccCCCCCCcEEEecCccCc-CCCccCCCCCCCcEE
Q 009053 203 KLDTLKIHDCTSLE--SLPSSLSMFKSLTSLEIIYCPKLKRLPD-ELGNLKALEELRVEGTAIR-RPPESLGQLSSLQIL 278 (545)
Q Consensus 203 ~L~~L~L~~~~~l~--~lp~~l~~l~~L~~L~Ls~c~~~~~lp~-~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L 278 (545)
+|+.|++++|...+ .+|..+..+++|+.|++++|...+.+|. .+..+++|++|++++|.++ .+|..+. ++|+.|
T Consensus 378 ~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L 455 (562)
T 3a79_B 378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVL 455 (562)
T ss_dssp SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEE
T ss_pred CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEE
Confidence 99999999987664 4566789999999999999998876665 5888999999999999997 4454443 799999
Q ss_pred eccCCcCCCcchhhhcCCCCCCEEeccCCcCccccCCC----CCCccEEeccCCCCC
Q 009053 279 SLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLPEL----PCNLHDLDASGCTSL 331 (545)
Q Consensus 279 ~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip~~----~~sL~~L~l~~c~~L 331 (545)
+|++| .++.+|..+..+++|+.|++++|+.. .+|.. .++|+.|++++|+-.
T Consensus 456 ~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 456 DLHNN-RIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp ECCSS-CCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred ECCCC-cCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcC
Confidence 99999 88899998889999999999998754 77763 468899999998643
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=6.7e-27 Score=237.88 Aligned_cols=281 Identities=18% Similarity=0.231 Sum_probs=239.0
Q ss_pred hhhCCCCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc--cccccCccEEEcCCCCCccccccccCCCCccE
Q 009053 14 TFSKMTELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL--DIHAENLVSLKMPGSKVKQLWDDVQNLVNLKK 91 (545)
Q Consensus 14 ~f~~m~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~ 91 (545)
+|..+++||+|++++|....++. +..++ +|++|++++|.++.+ ...+++|++|++++|.+..++. +..+++|+.
T Consensus 61 ~~~~~~~L~~L~l~~n~i~~~~~-~~~l~--~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQITDISP-LSNLV--KLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYS 136 (347)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCT--TCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred hhhhcCCccEEEccCCccccchh-hhcCC--cCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence 48999999999999987777776 88887 999999999999988 6788999999999999998876 899999999
Q ss_pred EEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCCCC
Q 009053 92 IDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSNLK 171 (545)
Q Consensus 92 LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~ 171 (545)
|++++|.....++.+..+++|+.|++++|... .++. +..+++|++|++++|. +..++....+++|+.|++++|.. .
T Consensus 137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l-~ 212 (347)
T 4fmz_A 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQI-T 212 (347)
T ss_dssp EECTTCTTCCCCGGGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCC-C
T ss_pred EECCCCCCcccccchhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCc-ccccccccCCCccceeecccCCC-C
Confidence 99999988888888999999999999998644 4433 8899999999999985 55566545899999999999754 4
Q ss_pred CCCcccc-CCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCC
Q 009053 172 NFPEISS-SGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLK 250 (545)
Q Consensus 172 ~~p~~~~-~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~ 250 (545)
.++.... ..|+.|++++|.+..++. +..+++|+.|++++|.... + ..+..+++|+.|++++|...+. ..+..++
T Consensus 213 ~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~ 287 (347)
T 4fmz_A 213 DITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLS 287 (347)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCT
T ss_pred CCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCC
Confidence 4443322 229999999999999987 8999999999999986554 4 4588999999999999976553 4588999
Q ss_pred CCcEEEecCccCcCC-CccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcC
Q 009053 251 ALEELRVEGTAIRRP-PESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKM 309 (545)
Q Consensus 251 ~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~ 309 (545)
+|+.|++++|.++.. |..+..+++|+.|++++| .++.++. +..+++|+.|++++|..
T Consensus 288 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS-SCCCCGG-GGGCTTCSEESSSCC--
T ss_pred CCCEEECcCCcCCCcChhHhhccccCCEEEccCC-ccccccC-hhhhhccceeehhhhcc
Confidence 999999999999854 567889999999999999 6776665 88999999999999874
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=3e-27 Score=258.18 Aligned_cols=301 Identities=16% Similarity=0.169 Sum_probs=249.2
Q ss_pred CCCCCcEEEeeCCCCccccCC-cCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCccccc-cccCCCCcc
Q 009053 17 KMTELRFLKFYGSENKCMVSS-LEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLWD-DVQNLVNLK 90 (545)
Q Consensus 17 ~m~~Lr~L~l~~~~~~~l~~~-l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~ 90 (545)
.+.+++.|+++++....+|.. +..++ +|++|+++++.+..+ ...+++|++|+|++|.+..++. .+..+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFR--QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCC--CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCC--CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 467889999988877778864 56776 999999999998877 4577899999999999998765 468999999
Q ss_pred EEEecCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCC
Q 009053 91 KIDLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSN 169 (545)
Q Consensus 91 ~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~ 169 (545)
.|+|++|.+....+. ++.+++|+.|++++|......|..++.+++|++|++++|. +..++ ...+++|+.|++++|.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~l~~L~~L~l~~n~- 203 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD-LSLIPSLFHANVSYNL- 203 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC-GGGCTTCSEEECCSSC-
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC-hhhhhhhhhhhcccCc-
Confidence 999999987755555 6899999999999987766667789999999999999975 44443 2368899999999864
Q ss_pred CCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCC
Q 009053 170 LKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNL 249 (545)
Q Consensus 170 l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l 249 (545)
+..++.. ..|+.|++++|.+..++..+ .++|+.|++++|...+ +..+..+++|+.|++++|...+..|..++.+
T Consensus 204 l~~l~~~--~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 204 LSTLAIP--IAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp CSEEECC--TTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred cccccCC--chhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 3333211 12999999999999887655 3689999999987765 3668899999999999999888889999999
Q ss_pred CCCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccccCCCCCCccEEeccCCC
Q 009053 250 KALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLPELPCNLHDLDASGCT 329 (545)
Q Consensus 250 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip~~~~sL~~L~l~~c~ 329 (545)
++|+.|++++|.++.+|..+..+++|+.|+|++| .+..+|..+..+++|+.|+|++|.....-+..+++|+.|++++|+
T Consensus 278 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 278 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp SSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred cCCCEEECCCCCCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCC
Confidence 9999999999999999888888999999999999 788999889999999999999998654434456788888888874
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.5e-27 Score=257.92 Aligned_cols=325 Identities=19% Similarity=0.246 Sum_probs=224.8
Q ss_pred CCCcEEEeeCCCCccc-cCCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCcccccc-ccCCCCccEE
Q 009053 19 TELRFLKFYGSENKCM-VSSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLWDD-VQNLVNLKKI 92 (545)
Q Consensus 19 ~~Lr~L~l~~~~~~~l-~~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L 92 (545)
++|+.|++++|....+ |..+..++ +|++|+++++.+..+ ...+++|++|++++|.++.++.. +..+++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACA--NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCT--TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhhhhcCC--cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 7899999999877666 46789997 999999999999887 46788999999999999988765 8999999999
Q ss_pred EecCCCCCCC-C-CCCCCCCCccEEEeeCCCCCcccc-ccccCCCCCCEEEecCCCCCCccCCcc-CCccccEEeecCCC
Q 009053 93 DLWYSKLLTK-L-PDLSLAQNLEILDLGGCSSLTETH-SSIQYLNKLEVLDLDRCESLRTLPTSI-QSKYLKRLVLRGCS 168 (545)
Q Consensus 93 dLs~~~~~~~-~-p~l~~l~~L~~L~L~~c~~l~~~~-~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~ 168 (545)
+|++|.+... . +.++.+++|++|++++|..++.++ ..++.+++|++|++++|...+..|..+ .+++|+.|+++++.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 9999988753 3 358999999999999998777776 578999999999999998776777777 89999999999875
Q ss_pred CCCCCCccc---cCCccEEEcccccCcccC---cc-ccCCC----------------------------CCCEEEecCCC
Q 009053 169 NLKNFPEIS---SSGIHRLDLTHVGIKELP---SS-IDRLS----------------------------KLDTLKIHDCT 213 (545)
Q Consensus 169 ~l~~~p~~~---~~~L~~L~l~~~~i~~lp---~~-~~~l~----------------------------~L~~L~L~~~~ 213 (545)
. ..+|... ...|+.|++++|.+.+++ .. ...++ +|+.|++++|.
T Consensus 184 ~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 184 S-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp S-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred c-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 3 4444432 122999999999888752 11 12233 33444443332
Q ss_pred CCcc--c---------------------------------cccccCCCCCcEEEEeCCCCCCcccccc-CCCCCCcEEEe
Q 009053 214 SLES--L---------------------------------PSSLSMFKSLTSLEIIYCPKLKRLPDEL-GNLKALEELRV 257 (545)
Q Consensus 214 ~l~~--l---------------------------------p~~l~~l~~L~~L~Ls~c~~~~~lp~~l-~~l~~L~~L~L 257 (545)
..+. + +......++|+.|++++|.. ..+|..+ ..+++|++|++
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~L 341 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDL 341 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCEEEC
T ss_pred ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCccccEEEc
Confidence 2110 0 00001124567777777653 4556554 45677777777
Q ss_pred cCccCcC-C---CccCCCCCCCcEEeccCCcCCCcch---hhhcCCCCCCEEeccCCcCccccCC---CCCCccEEeccC
Q 009053 258 EGTAIRR-P---PESLGQLSSLQILSLSDNSNLERAP---ESIRHLSKLTSLFISDCKMLQTLPE---LPCNLHDLDASG 327 (545)
Q Consensus 258 ~~n~l~~-l---p~~l~~l~~L~~L~L~~n~~~~~lp---~~l~~l~~L~~L~L~~c~~l~~ip~---~~~sL~~L~l~~ 327 (545)
++|.+.. + +..++.+++|+.|++++| .++.++ ..+..+++|++|++++|+ ++.+|+ .+++|++|++++
T Consensus 342 s~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~ 419 (549)
T 2z81_A 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSS 419 (549)
T ss_dssp CSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTT
T ss_pred cCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCC
Confidence 7777663 2 233566677777777777 555554 346667777777777764 335554 235677777776
Q ss_pred CCCCCccCCcccCCcccEEEEcCC
Q 009053 328 CTSLEALPASLSSKFYLSVDLSNC 351 (545)
Q Consensus 328 c~~L~~l~~~~~~~~~~~l~l~~C 351 (545)
|. ++.++.... ..++.|++++|
T Consensus 420 N~-l~~l~~~~~-~~L~~L~Ls~N 441 (549)
T 2z81_A 420 TG-IRVVKTCIP-QTLEVLDVSNN 441 (549)
T ss_dssp SC-CSCCCTTSC-TTCSEEECCSS
T ss_pred CC-cccccchhc-CCceEEECCCC
Confidence 64 445544332 23346666665
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.9e-26 Score=244.37 Aligned_cols=319 Identities=19% Similarity=0.253 Sum_probs=256.4
Q ss_pred hhhCCCCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc--cccccCccEEEcCCCCCccccccccCCCCccE
Q 009053 14 TFSKMTELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL--DIHAENLVSLKMPGSKVKQLWDDVQNLVNLKK 91 (545)
Q Consensus 14 ~f~~m~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~ 91 (545)
.|..+++||+|++++|....++. +..++ +|++|+++++.+..+ ...+++|++|++++|.++.++. +..+++|+.
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~--~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 138 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDITP-LKNLT--KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNR 138 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCT--TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred chhhhcCCCEEECCCCccCCchh-hhccc--cCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCE
Confidence 48899999999999987777776 88887 999999999999888 6788999999999999998865 899999999
Q ss_pred EEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCCCC
Q 009053 92 IDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSNLK 171 (545)
Q Consensus 92 LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~ 171 (545)
|++++|.+.. ++.++.+++|+.|++.+ ....++ .+..+++|+.|++++|. +..++....+++|+.|++++|....
T Consensus 139 L~l~~n~l~~-~~~~~~l~~L~~L~l~~--~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 139 LELSSNTISD-ISALSGLTSLQQLSFGN--QVTDLK-PLANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISD 213 (466)
T ss_dssp EEEEEEEECC-CGGGTTCTTCSEEEEEE--SCCCCG-GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCC
T ss_pred EECCCCccCC-ChhhccCCcccEeecCC--cccCch-hhccCCCCCEEECcCCc-CCCChhhccCCCCCEEEecCCcccc
Confidence 9999997654 66789999999999974 333443 38899999999999986 5556654489999999999986544
Q ss_pred CCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCC
Q 009053 172 NFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKA 251 (545)
Q Consensus 172 ~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~ 251 (545)
..|......|+.|++++|.+.+++ .+..+++|+.|++++|...+..+ +..+++|+.|++++|...+..+ ++.+++
T Consensus 214 ~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 288 (466)
T 1o6v_A 214 ITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 288 (466)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred cccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCc
Confidence 333222222999999999999885 58889999999999987765544 8899999999999998765443 889999
Q ss_pred CcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccccCC--CCCCccEEeccCCC
Q 009053 252 LEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLPE--LPCNLHDLDASGCT 329 (545)
Q Consensus 252 L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip~--~~~sL~~L~l~~c~ 329 (545)
|+.|++++|.++.++. +..+++|+.|++++| .+..++. +..+++|+.|++++|+. ..++. ..++|+.|++++|.
T Consensus 289 L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 289 LTNLELNENQLEDISP-ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNNKV-SDVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp CSEEECCSSCCSCCGG-GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSC
T ss_pred cCeEEcCCCcccCchh-hcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCCcc-CCchhhccCCCCCEEeCCCCc
Confidence 9999999999998865 788999999999999 6776654 78999999999999964 44444 34789999999986
Q ss_pred CCCccCCcccCCcccEEEEcCC
Q 009053 330 SLEALPASLSSKFYLSVDLSNC 351 (545)
Q Consensus 330 ~L~~l~~~~~~~~~~~l~l~~C 351 (545)
.....|.... ..++.+++.+|
T Consensus 365 l~~~~~~~~l-~~L~~L~l~~n 385 (466)
T 1o6v_A 365 ISDLTPLANL-TRITQLGLNDQ 385 (466)
T ss_dssp CCBCGGGTTC-TTCCEEECCCE
T ss_pred cCccchhhcC-CCCCEEeccCC
Confidence 5443331111 22345666554
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=5.8e-27 Score=242.44 Aligned_cols=289 Identities=12% Similarity=0.079 Sum_probs=247.3
Q ss_pred ccccChhhhhCCCCCcEEEeeCCCCcccc-CCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCccccc
Q 009053 7 EIQINPYTFSKMTELRFLKFYGSENKCMV-SSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLWD 81 (545)
Q Consensus 7 ~~~~~~~~f~~m~~Lr~L~l~~~~~~~l~-~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~~ 81 (545)
...+++..|.++++||+|++++|....++ ..+..++ +|++|+++++.+..+ ...+++|++|++++|.++.++.
T Consensus 57 l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 134 (390)
T 3o6n_A 57 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH--TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 134 (390)
T ss_dssp ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT--TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred hhhCChhHhcccccCcEEECCCCcccccChhhccCCC--CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH
Confidence 34578888999999999999998777776 5788887 999999999999888 4578999999999999999997
Q ss_pred cc-cCCCCccEEEecCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccc
Q 009053 82 DV-QNLVNLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYL 159 (545)
Q Consensus 82 ~~-~~l~~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L 159 (545)
.+ ..+++|+.|++++|.+....++ +..+++|++|++++|.... + .++.+++|+.|++++|. +..++ ..++|
T Consensus 135 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~--~~~~l~~L~~L~l~~n~-l~~~~---~~~~L 207 (390)
T 3o6n_A 135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V--DLSLIPSLFHANVSYNL-LSTLA---IPIAV 207 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-C--CGGGCTTCSEEECCSSC-CSEEE---CCSSC
T ss_pred HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-c--ccccccccceeeccccc-ccccC---CCCcc
Confidence 74 8999999999999988776665 8899999999999986443 3 36778999999999974 33322 45689
Q ss_pred cEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCC
Q 009053 160 KRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKL 239 (545)
Q Consensus 160 ~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~ 239 (545)
+.|++++|. +..+|......|+.|++++|.+.+. ..+..+++|+.|++++|...+..|..+..+++|+.|++++|...
T Consensus 208 ~~L~l~~n~-l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (390)
T 3o6n_A 208 EELDASHNS-INVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285 (390)
T ss_dssp SEEECCSSC-CCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC
T ss_pred eEEECCCCe-eeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc
Confidence 999999965 4555544444499999999999987 57899999999999999888888889999999999999998764
Q ss_pred CccccccCCCCCCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCc
Q 009053 240 KRLPDELGNLKALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKML 310 (545)
Q Consensus 240 ~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l 310 (545)
.+|..+..+++|++|++++|.++.+|..+..+++|+.|++++| .+..++ +..+++|+.|++++|+..
T Consensus 286 -~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 286 -ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp -EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred -ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCCcc
Confidence 4677778899999999999999999988999999999999999 777776 788999999999998754
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=2.1e-26 Score=244.64 Aligned_cols=302 Identities=24% Similarity=0.237 Sum_probs=231.6
Q ss_pred cEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCccc-cccccCCCCccEEEecC
Q 009053 22 RFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQL-WDDVQNLVNLKKIDLWY 96 (545)
Q Consensus 22 r~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~LdLs~ 96 (545)
+.++.+++....+|.+ ++ .+++.|+++++.++.+ ...+++|++|+|++|.++.+ +..+.++++|+.|+|++
T Consensus 14 ~~v~c~~~~l~~ip~~---~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEG---IP-TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCSSCCSC---CC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcCCCC---CC-CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 4556555555556653 34 5888888888888877 45678888899988888866 67788888999999988
Q ss_pred CCCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCcc-CCccccEEeecCCCCCCCCC
Q 009053 97 SKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI-QSKYLKRLVLRGCSNLKNFP 174 (545)
Q Consensus 97 ~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~p 174 (545)
|.+....+. +..+++|++|+|++|......+..+..+++|++|++++|......+..+ .+++|+.|++++|. ++.++
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~ 168 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIP 168 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCC
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccC
Confidence 876654443 6788889999998887766677788888899999998876544444445 78888888888874 44444
Q ss_pred cc-ccCC--ccEEEcccccCcccCc-cccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCC
Q 009053 175 EI-SSSG--IHRLDLTHVGIKELPS-SIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLK 250 (545)
Q Consensus 175 ~~-~~~~--L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~ 250 (545)
.. .... |+.|++.+|.+..++. .+..+++|+.|++++|...+.+|.......+|++|++++|......+..+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 32 2222 8889999888887765 678899999999999998888888877778999999999876654446788999
Q ss_pred CCcEEEecCccCcCCC-ccCCCCCCCcEEeccCCcCCC-cchhhhcCCCCCCEEeccCCcCccccCC----CCCCccEEe
Q 009053 251 ALEELRVEGTAIRRPP-ESLGQLSSLQILSLSDNSNLE-RAPESIRHLSKLTSLFISDCKMLQTLPE----LPCNLHDLD 324 (545)
Q Consensus 251 ~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~c~~l~~ip~----~~~sL~~L~ 324 (545)
+|+.|++++|.++.++ ..+..+++|+.|+|++| .+. ..|..+..+++|+.|+|++|.. +.+|+ ..++|+.|+
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~ 326 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQL-TTLEESVFHSVGNLETLI 326 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSSCC-SCCCGGGBSCGGGCCEEE
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCCcC-ceeCHhHcCCCcccCEEE
Confidence 9999999999988664 46788999999999999 555 4577888999999999999864 44443 236788888
Q ss_pred ccCCCC
Q 009053 325 ASGCTS 330 (545)
Q Consensus 325 l~~c~~ 330 (545)
+++|+.
T Consensus 327 l~~N~l 332 (477)
T 2id5_A 327 LDSNPL 332 (477)
T ss_dssp CCSSCE
T ss_pred ccCCCc
Confidence 887743
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.5e-26 Score=251.03 Aligned_cols=324 Identities=14% Similarity=0.137 Sum_probs=224.3
Q ss_pred CCCcEEEeeCCCCcccc-CCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCccccccccCCCCccEEE
Q 009053 19 TELRFLKFYGSENKCMV-SSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLWDDVQNLVNLKKID 93 (545)
Q Consensus 19 ~~Lr~L~l~~~~~~~l~-~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~Ld 93 (545)
++|+.|++++|....++ ..+..++ +|++|++++|.++.+ ...+++|++|++++|.++.+|.. .+++|+.|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLS--ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCT--TCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhhhccCC--CccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEE
Confidence 67888888877666665 5677776 888888888877776 34567788888888888877766 788888888
Q ss_pred ecCCCCCCC-CC-CCCCCCCccEEEeeCCCCCccccccccCCCCC--CEEEecCCCC--CCccCCcc-C-----------
Q 009053 94 LWYSKLLTK-LP-DLSLAQNLEILDLGGCSSLTETHSSIQYLNKL--EVLDLDRCES--LRTLPTSI-Q----------- 155 (545)
Q Consensus 94 Ls~~~~~~~-~p-~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L--~~L~L~~c~~--l~~lp~~~-~----------- 155 (545)
|++|.+... .| .++.+++|++|++++|..... .+..+++| +.|++++|.. ....|..+ .
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 204 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEEC
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEec
Confidence 888876652 23 477788888888887654432 34444555 8888887755 33333222 1
Q ss_pred ---------------CccccEEee-------------------------------------------------------c
Q 009053 156 ---------------SKYLKRLVL-------------------------------------------------------R 165 (545)
Q Consensus 156 ---------------l~~L~~L~L-------------------------------------------------------~ 165 (545)
+++|+.+++ +
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 284 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence 223333333 3
Q ss_pred CCCCCCCCCccc-----cC----------------------------CccEEEcccccCcccCccccCCCCCCEEEecCC
Q 009053 166 GCSNLKNFPEIS-----SS----------------------------GIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDC 212 (545)
Q Consensus 166 ~c~~l~~~p~~~-----~~----------------------------~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~ 212 (545)
+|...+.+|... .. .++.|+++++.+..++. ...+++|+.|++++|
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n 363 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQN 363 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSS
T ss_pred ccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEEECCCC
Confidence 332222233221 00 03333333333322211 167899999999999
Q ss_pred CCCccccccccCCCCCcEEEEeCCCCCC--ccccccCCCCCCcEEEecCccCcC-CCcc-CCCCCCCcEEeccCCcCCCc
Q 009053 213 TSLESLPSSLSMFKSLTSLEIIYCPKLK--RLPDELGNLKALEELRVEGTAIRR-PPES-LGQLSSLQILSLSDNSNLER 288 (545)
Q Consensus 213 ~~l~~lp~~l~~l~~L~~L~Ls~c~~~~--~lp~~l~~l~~L~~L~L~~n~l~~-lp~~-l~~l~~L~~L~L~~n~~~~~ 288 (545)
...+.+|..+..+++|+.|++++|...+ .+|..++++++|+.|++++|.++. +|.. +..+++|+.|++++|...+.
T Consensus 364 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443 (562)
T ss_dssp CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG
T ss_pred ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcc
Confidence 9888889999999999999999998765 456789999999999999999996 7764 77899999999999943345
Q ss_pred chhhhcCCCCCCEEeccCCcCccccCCC---CCCccEEeccCCCCCCccCCc-ccC-CcccEEEEcCCCCC
Q 009053 289 APESIRHLSKLTSLFISDCKMLQTLPEL---PCNLHDLDASGCTSLEALPAS-LSS-KFYLSVDLSNCLKL 354 (545)
Q Consensus 289 lp~~l~~l~~L~~L~L~~c~~l~~ip~~---~~sL~~L~l~~c~~L~~l~~~-~~~-~~~~~l~l~~C~~L 354 (545)
+|..+. ++|+.|++++|+ ++.+|.. .++|+.|++++| .++.+|.. ... ..++.+++++++--
T Consensus 444 ~~~~l~--~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 444 VFRCLP--PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp GGSSCC--TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred hhhhhc--CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 665443 799999999995 5578763 468999999997 56678765 221 23457888876543
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.4e-25 Score=254.59 Aligned_cols=314 Identities=18% Similarity=0.170 Sum_probs=257.2
Q ss_pred CCCCCcEEEeeCCCCccc-cCCcCCCCCCCccEEEeCCCCC-Ccc----cccccCccEEEcCCCCCccc-cccccCCCCc
Q 009053 17 KMTELRFLKFYGSENKCM-VSSLEGVPFTEVRYFEWHQYPL-KTL----DIHAENLVSLKMPGSKVKQL-WDDVQNLVNL 89 (545)
Q Consensus 17 ~m~~Lr~L~l~~~~~~~l-~~~l~~l~~~~Lr~L~l~~~~l-~~l----~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L 89 (545)
-.++|+.|++++|....+ |..+..++ +|++|+++++.. ..+ ...+++|++|+|++|.+..+ |..+..+++|
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~--~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLE--QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCC--SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccc--cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 458999999999877666 57899997 999999999943 333 56789999999999999976 7889999999
Q ss_pred cEEEecCCCCCCCCCC---CCCCCCccEEEeeCCCCCcccc-ccccCCCCCCEEEecCCCCCCccCCcc-CC--ccccEE
Q 009053 90 KKIDLWYSKLLTKLPD---LSLAQNLEILDLGGCSSLTETH-SSIQYLNKLEVLDLDRCESLRTLPTSI-QS--KYLKRL 162 (545)
Q Consensus 90 ~~LdLs~~~~~~~~p~---l~~l~~L~~L~L~~c~~l~~~~-~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l--~~L~~L 162 (545)
+.|+|++|.+....|. ++.+++|++|+|++|......+ ..++.+++|++|++++|......+..+ .+ ++|+.|
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 9999999998876553 8899999999999997665544 578999999999999987666666655 44 899999
Q ss_pred eecCCCCCCCCCcccc-------CC-ccEEEcccccCcc-cCccc-----------------------------------
Q 009053 163 VLRGCSNLKNFPEISS-------SG-IHRLDLTHVGIKE-LPSSI----------------------------------- 198 (545)
Q Consensus 163 ~L~~c~~l~~~p~~~~-------~~-L~~L~l~~~~i~~-lp~~~----------------------------------- 198 (545)
++++|......|.... .. |+.|++++|.+.. ++..+
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 9999876655543321 11 8999999996642 22111
Q ss_pred -cC--CCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCC-CccCCCCCC
Q 009053 199 -DR--LSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRP-PESLGQLSS 274 (545)
Q Consensus 199 -~~--l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~ 274 (545)
.. .++|+.|++++|...+..|..+..+++|+.|++++|...+..|..+..+++|++|++++|.++.+ |..+..+++
T Consensus 260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 339 (844)
T 3j0a_A 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339 (844)
T ss_dssp TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence 11 36899999999988887788899999999999999998888888999999999999999999866 778999999
Q ss_pred CcEEeccCCcCCCcch-hhhcCCCCCCEEeccCCcCccccCCCCCCccEEeccCCCCCCccCC
Q 009053 275 LQILSLSDNSNLERAP-ESIRHLSKLTSLFISDCKMLQTLPELPCNLHDLDASGCTSLEALPA 336 (545)
Q Consensus 275 L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~c~~l~~ip~~~~sL~~L~l~~c~~L~~l~~ 336 (545)
|+.|++++| .+..++ ..+..+++|+.|++++|.. +.++. +++|+.|++++|. ++.+|.
T Consensus 340 L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~-~~~L~~L~l~~N~-l~~l~~ 398 (844)
T 3j0a_A 340 VAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNAL-TTIHF-IPSIPDIFLSGNK-LVTLPK 398 (844)
T ss_dssp CCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCCS-CCCSS-CCSCSEEEEESCC-CCCCCC
T ss_pred CCEEECCCC-CCCccChhhhcCCCCCCEEECCCCCC-CcccC-CCCcchhccCCCC-cccccc
Confidence 999999999 667555 4688899999999999864 45555 6789999999874 445554
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=2.2e-26 Score=242.80 Aligned_cols=307 Identities=19% Similarity=0.163 Sum_probs=205.7
Q ss_pred hhhhhCCCCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc-cccccCccEEEcCCCCCccccccccCCCCcc
Q 009053 12 PYTFSKMTELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL-DIHAENLVSLKMPGSKVKQLWDDVQNLVNLK 90 (545)
Q Consensus 12 ~~~f~~m~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~ 90 (545)
+..|+++++|+.|+++++....+| ++..++ +|++|+++++.++.+ ...+++|++|++++|.++.++ +..+++|+
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~--~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLT--GLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD--VTPLTKLT 109 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCT--TCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccC--CCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee--cCCCCcCC
Confidence 446788899999999887666666 677786 899999999888888 677788888888888888875 78888888
Q ss_pred EEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCCC
Q 009053 91 KIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSNL 170 (545)
Q Consensus 91 ~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l 170 (545)
.|++++|.+.. +| ++.+++|++|++++|.... ++ ++.+++|++|++++|..++.++ ...+++|+.|++++|. +
T Consensus 110 ~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~-l 182 (457)
T 3bz5_A 110 YLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNK-I 182 (457)
T ss_dssp EEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSC-C
T ss_pred EEECCCCcCCe-ec-CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCc-c
Confidence 88888887665 44 7888888888888875433 43 7788888888888887676663 2367777777777753 4
Q ss_pred CCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCC
Q 009053 171 KNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLK 250 (545)
Q Consensus 171 ~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~ 250 (545)
+.+|-.....|+.|++++|.+++++ ++.+++|+.|++++|...+ +| +..+++|+.|++++|...+. | ++.++
T Consensus 183 ~~l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~-~--~~~l~ 254 (457)
T 3bz5_A 183 TELDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL-D--VSTLS 254 (457)
T ss_dssp CCCCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred ceeccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc-C--HHHCC
Confidence 4444111112677777777766663 6666677777777665444 44 55666677777766655443 2 34455
Q ss_pred CCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccccCCCCCCccEEeccCCCC
Q 009053 251 ALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLPELPCNLHDLDASGCTS 330 (545)
Q Consensus 251 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip~~~~sL~~L~l~~c~~ 330 (545)
+|+.|+++++ +|+.|++++|...+.+| ...+++|+.|++++|..++.+|...++|+.|++++|+.
T Consensus 255 ~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~ 319 (457)
T 3bz5_A 255 KLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK 319 (457)
T ss_dssp TCCEEECTTC-------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred CCCEEeccCC-------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhccc
Confidence 5555555543 34455566665455555 35667777777777777777776556666666666666
Q ss_pred CCccCCcccCCcccEEEEcCCCCCC
Q 009053 331 LEALPASLSSKFYLSVDLSNCLKLD 355 (545)
Q Consensus 331 L~~l~~~~~~~~~~~l~l~~C~~L~ 355 (545)
|+.+..... .. ..+++.+|++|.
T Consensus 320 L~~L~L~~N-~l-~~l~l~~l~~L~ 342 (457)
T 3bz5_A 320 LVYLYLNNT-EL-TELDVSHNTKLK 342 (457)
T ss_dssp CCEEECTTC-CC-SCCCCTTCTTCS
T ss_pred CCEEECCCC-cc-cccccccCCcCc
Confidence 665543322 11 123455555554
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=245.41 Aligned_cols=288 Identities=22% Similarity=0.258 Sum_probs=216.4
Q ss_pred CCCcEEEeeCCCCcccc-CCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCcccccc-ccCCCCccEE
Q 009053 19 TELRFLKFYGSENKCMV-SSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLWDD-VQNLVNLKKI 92 (545)
Q Consensus 19 ~~Lr~L~l~~~~~~~l~-~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L 92 (545)
++|+.|++++|....++ ..+..++ +|++|+++++.+..+ ...+++|++|+|++|.++.++.. +..+++|+.|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFP--HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCT--TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHccCCC--CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 57888888887766664 5777776 888888888887776 45677888888888888887754 5788888888
Q ss_pred EecCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCc-c-CCccccEEeecCCCC
Q 009053 93 DLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTS-I-QSKYLKRLVLRGCSN 169 (545)
Q Consensus 93 dLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~L~~c~~ 169 (545)
+|++|.+....+. +..+++|+.|++++|......+..+..+++|++|++++|. +..++.. + .+++|+.|++++|..
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcC
Confidence 8888887766553 7788888888888877666666778888888888888874 4455543 3 788888888888654
Q ss_pred CCCCCccccCC--ccEEEcccccC-cccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCcccccc
Q 009053 170 LKNFPEISSSG--IHRLDLTHVGI-KELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDEL 246 (545)
Q Consensus 170 l~~~p~~~~~~--L~~L~l~~~~i-~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l 246 (545)
....+...... |+.|+++++.. ..+|.......+|+.|++++|......+..+..+++|+.|++++|...+..+..+
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence 33222222222 88888888654 4567666666788888888876554333567788888888888888776666778
Q ss_pred CCCCCCcEEEecCccCcCC-CccCCCCCCCcEEeccCCcCCCcchh-hhcCCCCCCEEeccCCcCc
Q 009053 247 GNLKALEELRVEGTAIRRP-PESLGQLSSLQILSLSDNSNLERAPE-SIRHLSKLTSLFISDCKML 310 (545)
Q Consensus 247 ~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~lp~-~l~~l~~L~~L~L~~c~~l 310 (545)
..+++|+.|++++|.++.+ |..+..+++|+.|+|++| .++.+|. .+..+++|+.|++++|+..
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCcc
Confidence 8888888888888888855 677888888999999888 6666654 4577888889988888754
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.9e-26 Score=250.45 Aligned_cols=290 Identities=12% Similarity=0.072 Sum_probs=248.7
Q ss_pred ccccChhhhhCCCCCcEEEeeCCCCcccc-CCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCccccc
Q 009053 7 EIQINPYTFSKMTELRFLKFYGSENKCMV-SSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLWD 81 (545)
Q Consensus 7 ~~~~~~~~f~~m~~Lr~L~l~~~~~~~l~-~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~~ 81 (545)
...+++..|++|++|++|++++|....++ ..+..++ +|++|++++|.+..+ ...+++|++|+|++|.++.+|.
T Consensus 63 l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 140 (597)
T 3oja_B 63 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH--TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 140 (597)
T ss_dssp ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT--TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCC--CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCH
Confidence 34578889999999999999998777776 5888887 999999999999988 3578999999999999999987
Q ss_pred c-ccCCCCccEEEecCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccc
Q 009053 82 D-VQNLVNLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYL 159 (545)
Q Consensus 82 ~-~~~l~~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L 159 (545)
. +..+++|+.|+|++|.+....|. ++.+++|+.|++++|... .+ .++.+++|+.|++++|. +..+ ...++|
T Consensus 141 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~--~~~~l~~L~~L~l~~n~-l~~l---~~~~~L 213 (597)
T 3oja_B 141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HV--DLSLIPSLFHANVSYNL-LSTL---AIPIAV 213 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BC--CGGGCTTCSEEECCSSC-CSEE---ECCTTC
T ss_pred HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-Cc--ChhhhhhhhhhhcccCc-cccc---cCCchh
Confidence 6 48999999999999998877774 899999999999998644 33 36678999999999974 3332 245689
Q ss_pred cEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCC
Q 009053 160 KRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKL 239 (545)
Q Consensus 160 ~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~ 239 (545)
+.|++++|. +..++......|+.|++++|.+.+. ..+..+++|+.|+|++|...+..|..+..+++|+.|++++|...
T Consensus 214 ~~L~ls~n~-l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 214 EELDASHNS-INVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291 (597)
T ss_dssp SEEECCSSC-CCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred heeeccCCc-ccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC
Confidence 999999975 4444444434499999999999985 67899999999999999988888999999999999999998765
Q ss_pred CccccccCCCCCCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCcc
Q 009053 240 KRLPDELGNLKALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQ 311 (545)
Q Consensus 240 ~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~ 311 (545)
+ +|..++.+++|+.|++++|.+..+|..+..+++|+.|+|++| .+..+| +..+++|+.|++++|+...
T Consensus 292 ~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 292 A-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp E-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred C-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCCCCC
Confidence 4 677788899999999999999999999999999999999999 777776 7789999999999997643
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=1.5e-25 Score=248.49 Aligned_cols=320 Identities=17% Similarity=0.155 Sum_probs=182.5
Q ss_pred cccChhhhhCCCCCcEEEeeCCCCccc-cCCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCcccc-c
Q 009053 8 IQINPYTFSKMTELRFLKFYGSENKCM-VSSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLW-D 81 (545)
Q Consensus 8 ~~~~~~~f~~m~~Lr~L~l~~~~~~~l-~~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~-~ 81 (545)
..+.+.+|+++++|++|++++|....+ |..+..++ +|++|+++++.++.+ ...+++|++|++++|.++.++ .
T Consensus 38 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~ 115 (680)
T 1ziw_A 38 RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLP--MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115 (680)
T ss_dssp CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCT--TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSC
T ss_pred CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhccc--CcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChh
Confidence 345566677777777777776654444 34566665 777777777776666 335667777777777777665 4
Q ss_pred cccCCCCccEEEecCCCCCCCCCC-CCCCCCccEEEeeCCCCCcccccccc--CCCCCCEEEecCCCCCCccCCcc-CC-
Q 009053 82 DVQNLVNLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQ--YLNKLEVLDLDRCESLRTLPTSI-QS- 156 (545)
Q Consensus 82 ~~~~l~~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~--~l~~L~~L~L~~c~~l~~lp~~~-~l- 156 (545)
.+..+++|++|+|++|.+....|. ++.+++|++|++++|......+..+. .+++|+.|++++|...+..|..+ .+
T Consensus 116 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 195 (680)
T 1ziw_A 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195 (680)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSS
T ss_pred HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhh
Confidence 567777777777777766655543 66677777777777654433333332 44677777777764433333222 22
Q ss_pred --------------------------ccccEEeecCCCCCCCCCccccC----CccEEEcccccCcccC-ccccCCCCCC
Q 009053 157 --------------------------KYLKRLVLRGCSNLKNFPEISSS----GIHRLDLTHVGIKELP-SSIDRLSKLD 205 (545)
Q Consensus 157 --------------------------~~L~~L~L~~c~~l~~~p~~~~~----~L~~L~l~~~~i~~lp-~~~~~l~~L~ 205 (545)
++|+.|++++|...+..|..... .|+.|++++|.+..++ ..++.+++|+
T Consensus 196 ~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (680)
T 1ziw_A 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275 (680)
T ss_dssp EECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCccccc
Confidence 34455555554333222222221 1777777777777654 4567777777
Q ss_pred EEEecCCCCCccccccccCCCCCcEEEEeCCCCCC-----cccc----ccCCCCCCcEEEecCccCcCC-CccCCCCCCC
Q 009053 206 TLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLK-----RLPD----ELGNLKALEELRVEGTAIRRP-PESLGQLSSL 275 (545)
Q Consensus 206 ~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~-----~lp~----~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L 275 (545)
.|++++|...+..|..+..+++|+.|++++|...+ .+|. .++.+++|++|++++|.+..+ +..+..+++|
T Consensus 276 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 355 (680)
T 1ziw_A 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355 (680)
T ss_dssp EEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTC
T ss_pred EeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCC
Confidence 77777776666656566666666666665543221 2222 445556666666666665544 2334455555
Q ss_pred cEEeccCCc---------------------------CCC-cchhhhcCCCCCCEEeccCCcCccccCC----CCCCccEE
Q 009053 276 QILSLSDNS---------------------------NLE-RAPESIRHLSKLTSLFISDCKMLQTLPE----LPCNLHDL 323 (545)
Q Consensus 276 ~~L~L~~n~---------------------------~~~-~lp~~l~~l~~L~~L~L~~c~~l~~ip~----~~~sL~~L 323 (545)
+.|++++|. .+. ..|..+..+++|+.|++++|...+.+|. ..++|++|
T Consensus 356 ~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L 435 (680)
T 1ziw_A 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435 (680)
T ss_dssp CEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEE
T ss_pred cEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEE
Confidence 555544431 222 2234455566666666666655444432 23455555
Q ss_pred eccCCC
Q 009053 324 DASGCT 329 (545)
Q Consensus 324 ~l~~c~ 329 (545)
++++|.
T Consensus 436 ~Ls~n~ 441 (680)
T 1ziw_A 436 YLSYNK 441 (680)
T ss_dssp ECCSCS
T ss_pred ecCCCC
Confidence 555543
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=1.9e-25 Score=247.78 Aligned_cols=339 Identities=19% Similarity=0.164 Sum_probs=250.8
Q ss_pred cChhhhhCCCC--CcEEEeeCCCCcccc-CCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCc-----
Q 009053 10 INPYTFSKMTE--LRFLKFYGSENKCMV-SSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVK----- 77 (545)
Q Consensus 10 ~~~~~f~~m~~--Lr~L~l~~~~~~~l~-~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~----- 77 (545)
+.+.+|.+++. |+.|++++|....++ ..+..++ +|++|+++++.+..+ ...+++|++|+++++...
T Consensus 237 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 314 (680)
T 1ziw_A 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP--QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314 (680)
T ss_dssp ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCT--TCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----
T ss_pred cChhHhhccCcCCCCEEECCCCCcCccCcccccCcc--cccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc
Confidence 44566777654 888888777555544 5677776 888888888877766 456678888888765433
Q ss_pred -cccc----cccCCCCccEEEecCCCCCCCCCC-CCCCCCccEEEeeCCCC-Cccccc-ccc--CCCCCCEEEecCCCCC
Q 009053 78 -QLWD----DVQNLVNLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGGCSS-LTETHS-SIQ--YLNKLEVLDLDRCESL 147 (545)
Q Consensus 78 -~l~~----~~~~l~~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~-l~~~~~-~i~--~l~~L~~L~L~~c~~l 147 (545)
.+|. .+..+++|+.|++++|.+....+. +..+++|++|++++|.. ...++. .+. ..++|+.|++++|...
T Consensus 315 ~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~ 394 (680)
T 1ziw_A 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394 (680)
T ss_dssp --CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC
T ss_pred ccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCC
Confidence 3332 567788888888888877765554 77888888888887753 222221 121 2357888888887655
Q ss_pred CccCCcc-CCccccEEeecCCCCCCCCCc-cccCC--ccEEEcccccCcccC-ccccCCCCCCEEEecCCCCC--ccccc
Q 009053 148 RTLPTSI-QSKYLKRLVLRGCSNLKNFPE-ISSSG--IHRLDLTHVGIKELP-SSIDRLSKLDTLKIHDCTSL--ESLPS 220 (545)
Q Consensus 148 ~~lp~~~-~l~~L~~L~L~~c~~l~~~p~-~~~~~--L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~l--~~lp~ 220 (545)
+..|..+ .+++|+.|++++|...+.+|. ..... |+.|++++|.+..++ ..+..+++|+.|++++|... +.+|.
T Consensus 395 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~ 474 (680)
T 1ziw_A 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSC
T ss_pred eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCc
Confidence 5556555 889999999999876555553 22222 999999999988764 46788999999999998764 67888
Q ss_pred cccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCC---------ccCCCCCCCcEEeccCCcCCCcchh
Q 009053 221 SLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPP---------ESLGQLSSLQILSLSDNSNLERAPE 291 (545)
Q Consensus 221 ~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp---------~~l~~l~~L~~L~L~~n~~~~~lp~ 291 (545)
.+..+++|+.|++++|...+..+..++.+++|++|++++|.++.++ ..+..+++|+.|+|++| .++.+|.
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~ 553 (680)
T 1ziw_A 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV 553 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred ccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCH
Confidence 8999999999999999887777778999999999999999988542 23788999999999999 7888886
Q ss_pred -hhcCCCCCCEEeccCCcCccccCCC----CCCccEEeccCCCCCCccCCccc---CCcccEEEEcCCCC
Q 009053 292 -SIRHLSKLTSLFISDCKMLQTLPEL----PCNLHDLDASGCTSLEALPASLS---SKFYLSVDLSNCLK 353 (545)
Q Consensus 292 -~l~~l~~L~~L~L~~c~~l~~ip~~----~~sL~~L~l~~c~~L~~l~~~~~---~~~~~~l~l~~C~~ 353 (545)
.+.++++|+.|++++|+. +.+|+. .++|+.|++++| .++.++.... ......+++.+++-
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp TTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred HHcccccCcceeECCCCCC-CcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCc
Confidence 578999999999998864 466642 378999999997 5666654321 13345888887654
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=5.5e-25 Score=222.27 Aligned_cols=277 Identities=16% Similarity=0.181 Sum_probs=144.5
Q ss_pred CccEEEeCCCCCCcc-cccccCccEEEcCCCCCccccc-cccCCCCccEEEecCCCCCCCCC-CCCCCCCccEEEeeCCC
Q 009053 45 EVRYFEWHQYPLKTL-DIHAENLVSLKMPGSKVKQLWD-DVQNLVNLKKIDLWYSKLLTKLP-DLSLAQNLEILDLGGCS 121 (545)
Q Consensus 45 ~Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~LdLs~~~~~~~~p-~l~~l~~L~~L~L~~c~ 121 (545)
+|+.++++++.++.+ ...+++|++|++++++++.++. .+..+++|++|+|++|.+....| .++.+++|++|++++|.
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 455555555555555 2233455555555555555443 35555555555555555544433 25555555555555543
Q ss_pred CCccccccccCCCCCCEEEecCCCCCCccCCc-c-CCccccEEeecCCCCCC--CCCccccCC--ccEEEcccccCcccC
Q 009053 122 SLTETHSSIQYLNKLEVLDLDRCESLRTLPTS-I-QSKYLKRLVLRGCSNLK--NFPEISSSG--IHRLDLTHVGIKELP 195 (545)
Q Consensus 122 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~L~~c~~l~--~~p~~~~~~--L~~L~l~~~~i~~lp 195 (545)
+..+|..+. ++|++|++++|. +..++.. + .+++|+.|++++|.... ..+...... |+.|++++|.+..+|
T Consensus 112 -l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 112 -LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp -CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred -CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence 334443332 455555555543 2233322 2 45555555555543321 112111111 566666666666665
Q ss_pred ccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCccCCCCCCC
Q 009053 196 SSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPESLGQLSSL 275 (545)
Q Consensus 196 ~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L 275 (545)
..+. ++|+.|++++|...+..|..+..+++|+.|++++|...+..+..++.+++|++|++++|.++.+|..+..+++|
T Consensus 188 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L 265 (330)
T 1xku_A 188 QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 265 (330)
T ss_dssp SSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSC
T ss_pred cccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCc
Confidence 5443 56666666666555555555666666666666666655555555666666666666666666666666666666
Q ss_pred cEEeccCCcCCCcchhh-hc------CCCCCCEEeccCCcCcc-ccC-C---CCCCccEEeccCC
Q 009053 276 QILSLSDNSNLERAPES-IR------HLSKLTSLFISDCKMLQ-TLP-E---LPCNLHDLDASGC 328 (545)
Q Consensus 276 ~~L~L~~n~~~~~lp~~-l~------~l~~L~~L~L~~c~~l~-~ip-~---~~~sL~~L~l~~c 328 (545)
+.|++++| .++.++.. +. ..+.|+.|++++|+... .++ . ...+++.++++++
T Consensus 266 ~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 266 QVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 66666666 55544432 11 23556666666665432 121 1 1234555555554
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=3.9e-25 Score=223.64 Aligned_cols=237 Identities=16% Similarity=0.221 Sum_probs=110.4
Q ss_pred CCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCccc-cccccCCCCccEEEe
Q 009053 20 ELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQL-WDDVQNLVNLKKIDL 94 (545)
Q Consensus 20 ~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~LdL 94 (545)
+|+.++++++....+|..+ + .+|++|+++++.++.+ ...+++|++|++++|.++.+ +..+..+++|++|+|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~-~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---S-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---C-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCCC---C-CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4555555544444444332 1 2555555555555444 23444555555555555544 344555555555555
Q ss_pred cCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCC--ccCCcc-CCccccEEeecCCCCC
Q 009053 95 WYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLR--TLPTSI-QSKYLKRLVLRGCSNL 170 (545)
Q Consensus 95 s~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~--~lp~~~-~l~~L~~L~L~~c~~l 170 (545)
++|.+. .+|. +. ++|++|++++|......+..+..+++|++|++++|.... ..+..+ .+ +|+.|+
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~------- 178 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR------- 178 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB-------
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEE-------
Confidence 555443 2222 21 455555555543332222334455555555555543211 222222 22 444444
Q ss_pred CCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCC
Q 009053 171 KNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLK 250 (545)
Q Consensus 171 ~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~ 250 (545)
+++|.++++|..+. ++|+.|++++|...+..+..+..+++|+.|++++|...+..+..++.++
T Consensus 179 ---------------l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 241 (332)
T 2ft3_A 179 ---------------ISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241 (332)
T ss_dssp ---------------CCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT
T ss_pred ---------------CcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC
Confidence 44444444444332 4455555555444443344444555555555555544444444445555
Q ss_pred CCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcc
Q 009053 251 ALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERA 289 (545)
Q Consensus 251 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~l 289 (545)
+|++|++++|.++.+|..+..+++|+.|++++| .++.+
T Consensus 242 ~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N-~l~~~ 279 (332)
T 2ft3_A 242 TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN-NITKV 279 (332)
T ss_dssp TCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS-CCCBC
T ss_pred CCCEEECCCCcCeecChhhhcCccCCEEECCCC-CCCcc
Confidence 555555555555555555555555555555555 34433
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.2e-24 Score=229.44 Aligned_cols=276 Identities=20% Similarity=0.182 Sum_probs=212.5
Q ss_pred hhhCCCCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc-cccccCccEEEcCCCCCccccccccCCCCccEE
Q 009053 14 TFSKMTELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL-DIHAENLVSLKMPGSKVKQLWDDVQNLVNLKKI 92 (545)
Q Consensus 14 ~f~~m~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L 92 (545)
+|+++++||+|++++|....+| +..++ +|++|++++|.++.+ ...+++|++|++++|+++.++ +..+++|+.|
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~--~~~l~--~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L 132 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLD--LSQNT--NLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL 132 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCC--CTTCT--TCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred hhcccCCCCEEEccCCcCCeEc--cccCC--CCCEEECcCCCCceeecCCCCcCCEEECCCCcCCeec--CCCCCcCCEE
Confidence 6899999999999998776665 77787 999999999999998 778899999999999999986 8999999999
Q ss_pred EecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCCCCC
Q 009053 93 DLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSNLKN 172 (545)
Q Consensus 93 dLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~ 172 (545)
++++|.+.. + +++.+++|++|++++|..++.+ .++.+++|+.|++++|. ++.+| ...+++|+.|++++|. ++.
T Consensus 133 ~l~~N~l~~-l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~-l~~l~~L~~L~l~~N~-l~~ 205 (457)
T 3bz5_A 133 NCARNTLTE-I-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD-VSQNKLLNRLNCDTNN-ITK 205 (457)
T ss_dssp ECTTSCCSC-C-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC-CTTCTTCCEEECCSSC-CSC
T ss_pred ECCCCccce-e-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec-cccCCCCCEEECcCCc-CCe
Confidence 999998876 3 4889999999999999877776 47889999999999975 55576 3489999999999975 444
Q ss_pred CCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCC-------CCcEEEEeCCCCCCccccc
Q 009053 173 FPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFK-------SLTSLEIIYCPKLKRLPDE 245 (545)
Q Consensus 173 ~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~-------~L~~L~Ls~c~~~~~lp~~ 245 (545)
++-.....|+.|++++|.++++| ++.+++|+.|++++|...+..+..+..++ +|+.|++++|...+.+|
T Consensus 206 ~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-- 281 (457)
T 3bz5_A 206 LDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-- 281 (457)
T ss_dssp CCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--
T ss_pred eccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--
Confidence 43222222999999999999998 88999999999999877654333232222 34455555555555555
Q ss_pred cCCCCCCcEEEecCccCc-CCCc--------cCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcC
Q 009053 246 LGNLKALEELRVEGTAIR-RPPE--------SLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKM 309 (545)
Q Consensus 246 l~~l~~L~~L~L~~n~l~-~lp~--------~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~ 309 (545)
.+.+++|+.|++++|... .+|. .+..+++|+.|++++| .++.++ +..+++|+.|++++|+.
T Consensus 282 ~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 282 AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSCC
T ss_pred ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCCC
Confidence 456778888888877532 2221 2455667777777777 555553 66777777777777654
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=1.3e-24 Score=219.49 Aligned_cols=283 Identities=17% Similarity=0.193 Sum_probs=209.9
Q ss_pred CCCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCccc-cccccCCCCccEE
Q 009053 18 MTELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQL-WDDVQNLVNLKKI 92 (545)
Q Consensus 18 m~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L 92 (545)
..+||.++++++....+|..+ + ..|++|+++++.++.+ ...+++|++|++++|.++.+ |..+..+++|++|
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~---~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDL---P-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSC---C-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred cCCCeEEEecCCCccccCccC---C-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 347888888776666677543 3 4888899988888877 45678889999998888876 6778888899999
Q ss_pred EecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCC--ccCCcc-CCccccEEeecCCCC
Q 009053 93 DLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLR--TLPTSI-QSKYLKRLVLRGCSN 169 (545)
Q Consensus 93 dLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~--~lp~~~-~l~~L~~L~L~~c~~ 169 (545)
+|++|.+. .+|.- ..++|++|++++|......+..+..+++|++|++++|.... ..+..+ .+++|+.|++++|.
T Consensus 106 ~Ls~n~l~-~l~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~- 182 (330)
T 1xku_A 106 YLSKNQLK-ELPEK-MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN- 182 (330)
T ss_dssp ECCSSCCS-BCCSS-CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-
T ss_pred ECCCCcCC-ccChh-hcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-
Confidence 99888765 34431 12788899998886655555667888899999998876532 344444 78888999988864
Q ss_pred CCCCCccccCCccEEEcccccCccc-CccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCC
Q 009053 170 LKNFPEISSSGIHRLDLTHVGIKEL-PSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGN 248 (545)
Q Consensus 170 l~~~p~~~~~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~ 248 (545)
++.+|......|+.|++++|.+.++ |..+..+++|+.|++++|...+..+..+..+++|++|++++|... .+|..+..
T Consensus 183 l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 183 ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 5556655544588899998888876 467888888999999888776666667888888999999888654 77888888
Q ss_pred CCCCcEEEecCccCcCCCcc-CC------CCCCCcEEeccCCcCCC--cchhhhcCCCCCCEEeccCCc
Q 009053 249 LKALEELRVEGTAIRRPPES-LG------QLSSLQILSLSDNSNLE--RAPESIRHLSKLTSLFISDCK 308 (545)
Q Consensus 249 l~~L~~L~L~~n~l~~lp~~-l~------~l~~L~~L~L~~n~~~~--~lp~~l~~l~~L~~L~L~~c~ 308 (545)
+++|++|++++|.++.++.. +. ..+.|+.|++++|+... ..|..+..+++|+.+++++|+
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 88899999998888877543 21 24678888898884322 445677888888888888774
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=4.5e-24 Score=224.98 Aligned_cols=286 Identities=22% Similarity=0.220 Sum_probs=153.6
Q ss_pred hhhhhCCCCCcEEEeeCCCC-ccccCCcCCCCCCC-------------ccEEEeCCCCCCcccccccCccEEEcCCCCCc
Q 009053 12 PYTFSKMTELRFLKFYGSEN-KCMVSSLEGVPFTE-------------VRYFEWHQYPLKTLDIHAENLVSLKMPGSKVK 77 (545)
Q Consensus 12 ~~~f~~m~~Lr~L~l~~~~~-~~l~~~l~~l~~~~-------------Lr~L~l~~~~l~~l~~~~~~L~~L~L~~~~l~ 77 (545)
|.+|++|++|++|++++|.. +.+|.++..+. + +++|+++++.++.+...+++|++|++++|.++
T Consensus 27 P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~--~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~~L~~L~l~~n~l~ 104 (454)
T 1jl5_A 27 PVEAENVKSKTEYYNAWSEWERNAPPGNGEQR--EMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT 104 (454)
T ss_dssp -------CCHHHHHHHHHHHHHTSCTTSCCCH--HHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCTTCSEEECCSSCCS
T ss_pred ChhHhcccchhhhhccCCcccccCCcccccch--hcchhhhhhhhccCCCEEEecCCccccCCCCcCCCCEEEccCCcCC
Confidence 45688888888888887543 36777777765 4 37777777777776334567777777777777
Q ss_pred cccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCc
Q 009053 78 QLWDDVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSK 157 (545)
Q Consensus 78 ~l~~~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~ 157 (545)
.+|.. +++|+.|++++|.+.. +|.+ .++|++|++++|... .+| .++.+++|++|++++|. ++.+|.. ..
T Consensus 105 ~lp~~---~~~L~~L~l~~n~l~~-l~~~--~~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~-l~~lp~~--~~ 173 (454)
T 1jl5_A 105 ELPEL---PQSLKSLLVDNNNLKA-LSDL--PPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNS-LKKLPDL--PP 173 (454)
T ss_dssp SCCCC---CTTCCEEECCSSCCSC-CCSC--CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSC-CSCCCCC--CT
T ss_pred ccccc---cCCCcEEECCCCccCc-ccCC--CCCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCc-CcccCCC--cc
Confidence 76643 3566666666665432 2221 146666666665433 355 46666666666666653 3334432 23
Q ss_pred cccEEeecCCCCCCCCCccccCC-ccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCC
Q 009053 158 YLKRLVLRGCSNLKNFPEISSSG-IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYC 236 (545)
Q Consensus 158 ~L~~L~L~~c~~l~~~p~~~~~~-L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c 236 (545)
+|+.|++++|. ++.+|.+..-. |+.|++++|.+.++|... ++|+.|++++|... .+|. +..+++|+.|++++|
T Consensus 174 ~L~~L~L~~n~-l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 174 SLEFIAAGNNQ-LEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNN 247 (454)
T ss_dssp TCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSS
T ss_pred cccEEECcCCc-CCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCC
Confidence 56666666653 33444322111 666666666666555432 35666666665433 4553 556666666666665
Q ss_pred CCCCccccccCCCCCCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccccCCC
Q 009053 237 PKLKRLPDELGNLKALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLPEL 316 (545)
Q Consensus 237 ~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip~~ 316 (545)
...+ +|.. +++|+.|++++|.++.+|.. +++|+.|++++| .++.+|.. .++|+.|++++|+ +..++..
T Consensus 248 ~l~~-l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N-~l~~l~~~---~~~L~~L~l~~N~-l~~i~~~ 315 (454)
T 1jl5_A 248 LLKT-LPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSEN-IFSGLSEL---PPNLYYLNASSNE-IRSLCDL 315 (454)
T ss_dssp CCSS-CCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSEESCC---CTTCCEEECCSSC-CSEECCC
T ss_pred cCCc-cccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCC-ccCcccCc---CCcCCEEECcCCc-CCcccCC
Confidence 4432 3322 25566666666666555542 245556666555 44443321 1345555555443 2234444
Q ss_pred CCCccEEeccCC
Q 009053 317 PCNLHDLDASGC 328 (545)
Q Consensus 317 ~~sL~~L~l~~c 328 (545)
|++|+.|++++|
T Consensus 316 ~~~L~~L~Ls~N 327 (454)
T 1jl5_A 316 PPSLEELNVSNN 327 (454)
T ss_dssp CTTCCEEECCSS
T ss_pred cCcCCEEECCCC
Confidence 445555555443
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=3.5e-24 Score=225.76 Aligned_cols=287 Identities=24% Similarity=0.257 Sum_probs=162.4
Q ss_pred CcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcccccccCccEEEcCCCCCccccccccCCCCccEEEecCCCCC
Q 009053 21 LRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTLDIHAENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLL 100 (545)
Q Consensus 21 Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~ 100 (545)
|+.|+++++....+|. ++ .+|++|+++++.++.+...+.+|++|++++|.++.++.. .++|++|++++|.+.
T Consensus 73 l~~L~l~~~~l~~lp~----~~-~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 73 AHELELNNLGLSSLPE----LP-PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp CSEEECTTSCCSCCCS----CC-TTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCS
T ss_pred CCEEEecCCccccCCC----Cc-CCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCC
Confidence 3666666654444443 23 366666666666666522345666666666666654432 146666666666554
Q ss_pred CCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCCCCCCCccccCC
Q 009053 101 TKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSNLKNFPEISSSG 180 (545)
Q Consensus 101 ~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~~ 180 (545)
. +|+++.+++|++|++++|. +..+|..+ ++|++|++++|. +..+|....+++|+.|++++|. +..+|.....
T Consensus 145 ~-lp~~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~-l~~l~~~~~l~~L~~L~l~~N~-l~~l~~~~~~- 216 (454)
T 1jl5_A 145 K-LPELQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQ-LEELPELQNLPFLTAIYADNNS-LKKLPDLPLS- 216 (454)
T ss_dssp S-CCCCTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSC-CSSCCCCCTT-
T ss_pred C-CcccCCCCCCCEEECCCCc-CcccCCCc---ccccEEECcCCc-CCcCccccCCCCCCEEECCCCc-CCcCCCCcCc-
Confidence 3 5556666666666666653 23344322 366666666653 3345543366666666666643 3334443332
Q ss_pred ccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCcccccc--------------
Q 009053 181 IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDEL-------------- 246 (545)
Q Consensus 181 L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l-------------- 246 (545)
|+.|++++|.+..+|. ++.+++|+.|++++|...+ +|.. +++|+.|++++|...+ +|...
T Consensus 217 L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 217 LESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFS 290 (454)
T ss_dssp CCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS
T ss_pred ccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcccCcCCEEECcCCccC
Confidence 6666666666666653 5566666666666654332 3321 2455555555544332 33211
Q ss_pred ---CCCCCCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccccCCCCCCccEE
Q 009053 247 ---GNLKALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLPELPCNLHDL 323 (545)
Q Consensus 247 ---~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip~~~~sL~~L 323 (545)
.-.++|+.|++++|.++.++. ..++|+.|++++| .+..+|.. +++|+.|++++|. ++.+|..+++|+.|
T Consensus 291 ~l~~~~~~L~~L~l~~N~l~~i~~---~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N~-l~~lp~~l~~L~~L 362 (454)
T 1jl5_A 291 GLSELPPNLYYLNASSNEIRSLCD---LPPSLEELNVSNN-KLIELPAL---PPRLERLIASFNH-LAEVPELPQNLKQL 362 (454)
T ss_dssp EESCCCTTCCEEECCSSCCSEECC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-CSCCCCCCTTCCEE
T ss_pred cccCcCCcCCEEECcCCcCCcccC---CcCcCCEEECCCC-cccccccc---CCcCCEEECCCCc-cccccchhhhccEE
Confidence 001344444554444443321 1257888888888 67777754 5789999999886 45788877889999
Q ss_pred eccCCCCCC--ccCCc
Q 009053 324 DASGCTSLE--ALPAS 337 (545)
Q Consensus 324 ~l~~c~~L~--~l~~~ 337 (545)
++++|...+ .+|..
T Consensus 363 ~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 363 HVEYNPLREFPDIPES 378 (454)
T ss_dssp ECCSSCCSSCCCCCTT
T ss_pred ECCCCCCCcCCCChHH
Confidence 998875544 45543
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=1.3e-24 Score=219.86 Aligned_cols=255 Identities=19% Similarity=0.274 Sum_probs=166.3
Q ss_pred CccEEEeCCCCCCcc-cccccCccEEEcCCCCCcccc-ccccCCCCccEEEecCCCCCCCCCC-CCCCCCccEEEeeCCC
Q 009053 45 EVRYFEWHQYPLKTL-DIHAENLVSLKMPGSKVKQLW-DDVQNLVNLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGGCS 121 (545)
Q Consensus 45 ~Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~ 121 (545)
+|+.++++++.++.+ ...+++|++|++++|.++.++ ..+..+++|+.|+|++|.+....|. ++.+++|++|++++|.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 455555555555544 222345555555555555442 2445555555555555544433332 4444555555554442
Q ss_pred CCccccccccCCCCCCEEEecCCCCCCccCCc-c-CCccccEEeecCCCCCCCCCccccCCccEEEcccccCcc---cCc
Q 009053 122 SLTETHSSIQYLNKLEVLDLDRCESLRTLPTS-I-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKE---LPS 196 (545)
Q Consensus 122 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~---lp~ 196 (545)
+..+|..+. ++|++|++++|. +..+|.. + .+++ |+.|++++|.++. .|.
T Consensus 114 -l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~----------------------L~~L~l~~n~l~~~~~~~~ 167 (332)
T 2ft3_A 114 -LVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRN----------------------MNCIEMGGNPLENSGFEPG 167 (332)
T ss_dssp -CCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSS----------------------CCEEECCSCCCBGGGSCTT
T ss_pred -CCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCcc----------------------CCEEECCCCccccCCCCcc
Confidence 223333332 444444444432 2222221 1 3333 5666666666542 345
Q ss_pred cccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCc-cCCCCCCC
Q 009053 197 SIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPE-SLGQLSSL 275 (545)
Q Consensus 197 ~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L 275 (545)
.+..+ +|+.|++++|... .+|..+. ++|++|++++|...+..+..+..+++|+.|++++|.++.++. .+..+++|
T Consensus 168 ~~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 243 (332)
T 2ft3_A 168 AFDGL-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243 (332)
T ss_dssp SSCSC-CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC
T ss_pred cccCC-ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC
Confidence 56666 9999999998754 4666554 799999999998888888899999999999999999997754 78899999
Q ss_pred cEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccccCC-----C-----CCCccEEeccCCCCC
Q 009053 276 QILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLPE-----L-----PCNLHDLDASGCTSL 331 (545)
Q Consensus 276 ~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip~-----~-----~~sL~~L~l~~c~~L 331 (545)
+.|++++| .++.+|..+..+++|+.|++++|+. +.++. . ..+|+.|++++++..
T Consensus 244 ~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 244 RELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNI-TKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CEEECCSS-CCCBCCTTGGGCTTCCEEECCSSCC-CBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CEEECCCC-cCeecChhhhcCccCCEEECCCCCC-CccChhHccccccccccccccceEeecCccc
Confidence 99999999 8889999999999999999999875 44432 1 356899999998754
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=1.6e-25 Score=224.53 Aligned_cols=248 Identities=17% Similarity=0.198 Sum_probs=194.3
Q ss_pred cCccEEEcCCCCCc---cccccccCCCCccEEEecC-CCCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCE
Q 009053 64 ENLVSLKMPGSKVK---QLWDDVQNLVNLKKIDLWY-SKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEV 138 (545)
Q Consensus 64 ~~L~~L~L~~~~l~---~l~~~~~~l~~L~~LdLs~-~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~ 138 (545)
.++++|+|+++.+. .+|..+..+++|++|+|++ |.+...+|. ++.+++|++|++++|...+.+|..++.+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57888888888887 4778888888888888884 766666664 778888888888887766677888888888888
Q ss_pred EEecCCCCCCccCCcc-CCccccEEeecCCCCCCCCCccccCCccEEEcccccCc-ccCccccCCC-CCCEEEecCCCCC
Q 009053 139 LDLDRCESLRTLPTSI-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIK-ELPSSIDRLS-KLDTLKIHDCTSL 215 (545)
Q Consensus 139 L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~-~lp~~~~~l~-~L~~L~L~~~~~l 215 (545)
|++++|...+.+|..+ .+++|+.|++++ |.+. .+|..+..++ +|+.|++++|...
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~----------------------N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDG----------------------NRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCS----------------------SCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcC----------------------CcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 8888876555666655 566655555555 4444 4677777777 8888888888877
Q ss_pred ccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCC-cchhhhc
Q 009053 216 ESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLE-RAPESIR 294 (545)
Q Consensus 216 ~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~-~lp~~l~ 294 (545)
+.+|..+..++ |+.|++++|...+..|..++.+++|+.|++++|.++..+..+..+++|++|++++| .+. .+|..+.
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~ 265 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN-RIYGTLPQGLT 265 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSS-CCEECCCGGGG
T ss_pred ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCC-cccCcCChHHh
Confidence 78888888877 88888888887777888888899999999999988866666888889999999999 555 8888888
Q ss_pred CCCCCCEEeccCCcCccccCCC--CCCccEEeccCCCCCCccC
Q 009053 295 HLSKLTSLFISDCKMLQTLPEL--PCNLHDLDASGCTSLEALP 335 (545)
Q Consensus 295 ~l~~L~~L~L~~c~~l~~ip~~--~~sL~~L~l~~c~~L~~l~ 335 (545)
.+++|+.|++++|+..+.+|.. .++|+.+++++++.+...|
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred cCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCC
Confidence 9999999999998887788865 3577888888887655433
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=1.4e-25 Score=225.05 Aligned_cols=246 Identities=18% Similarity=0.189 Sum_probs=199.5
Q ss_pred CCccEEEeCCCCCCc---c---cccccCccEEEcCC-CCCc-cccccccCCCCccEEEecCCCCCCCCCC-CCCCCCccE
Q 009053 44 TEVRYFEWHQYPLKT---L---DIHAENLVSLKMPG-SKVK-QLWDDVQNLVNLKKIDLWYSKLLTKLPD-LSLAQNLEI 114 (545)
Q Consensus 44 ~~Lr~L~l~~~~l~~---l---~~~~~~L~~L~L~~-~~l~-~l~~~~~~l~~L~~LdLs~~~~~~~~p~-l~~l~~L~~ 114 (545)
.+++.|+++++.+.. + ...+++|++|++++ +.+. .+|..+..+++|++|+|++|.+.+.+|. +..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 389999999999985 3 66789999999995 8887 7889999999999999999999877775 899999999
Q ss_pred EEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCcc-CCc-cccEEeecCCCCCCCCCccccCCccEEEcccccCc
Q 009053 115 LDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI-QSK-YLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIK 192 (545)
Q Consensus 115 L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~-~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~ 192 (545)
|++++|...+.+|..++.+++|++|++++|...+.+|..+ .++ +|+.|++++| .+.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N----------------------~l~ 187 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN----------------------RLT 187 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS----------------------EEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC----------------------eee
Confidence 9999998777899999999999999999987666777766 554 5555555554 444
Q ss_pred -ccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCc-CCCccCC
Q 009053 193 -ELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIR-RPPESLG 270 (545)
Q Consensus 193 -~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~ 270 (545)
.+|..+..++ |+.|++++|...+..|..+..+++|+.|++++|...+..|. +..+++|++|++++|.++ .+|..+.
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHh
Confidence 4566666666 88888888877777777788888888888888877666555 777888888888888888 7788888
Q ss_pred CCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccccC
Q 009053 271 QLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLP 314 (545)
Q Consensus 271 ~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip 314 (545)
.+++|+.|+|++|...+.+|.. .++++|+.|++++|+.+...|
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 8889999999988433477764 788889999999888665433
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.3e-24 Score=219.45 Aligned_cols=231 Identities=25% Similarity=0.377 Sum_probs=188.5
Q ss_pred cccCccEEEcCCCCCccccccccCCCCccEEEecCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEE
Q 009053 62 HAENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLD 140 (545)
Q Consensus 62 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~ 140 (545)
...++++|+++++.++.+|..+..+++|++|+|++|.+. .+|+ ++.+++|++|++++|... .+|..++.+++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 347899999999999999988888999999999999887 5664 888899999999988544 8888899999999999
Q ss_pred ecCCCCCCccCCccCCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccc
Q 009053 141 LDRCESLRTLPTSIQSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPS 220 (545)
Q Consensus 141 L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~ 220 (545)
+++|..++.+|..+. ...+.+. +.. . ..|+.|++++|.++.+|..++.+++|+.|++++|... .+|.
T Consensus 157 L~~n~~~~~~p~~~~-----~~~~~~~--~~~----l-~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~ 223 (328)
T 4fcg_A 157 IRACPELTELPEPLA-----STDASGE--HQG----L-VNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGP 223 (328)
T ss_dssp EEEETTCCCCCSCSE-----EEC-CCC--EEE----S-TTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCG
T ss_pred CCCCCCccccChhHh-----hccchhh--hcc----C-CCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCch
Confidence 999888888887542 0111100 000 0 0177777777778888888889999999999998765 4777
Q ss_pred cccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCc-CCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCC
Q 009053 221 SLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIR-RPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKL 299 (545)
Q Consensus 221 ~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L 299 (545)
.+..+++|+.|++++|...+.+|..++.+++|++|++++|.+. .+|..+..+++|+.|+|++|...+.+|..+.++++|
T Consensus 224 ~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L 303 (328)
T 4fcg_A 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303 (328)
T ss_dssp GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence 7888999999999999999999999999999999999997665 778888999999999999997888999999999999
Q ss_pred CEEeccCC
Q 009053 300 TSLFISDC 307 (545)
Q Consensus 300 ~~L~L~~c 307 (545)
+.+++..+
T Consensus 304 ~~l~l~~~ 311 (328)
T 4fcg_A 304 CIILVPPH 311 (328)
T ss_dssp CEEECCGG
T ss_pred eEEeCCHH
Confidence 99998864
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=1.1e-23 Score=230.92 Aligned_cols=343 Identities=20% Similarity=0.235 Sum_probs=228.4
Q ss_pred cccccChhhhhCCCCCcEEEeeCCCCccccC-CcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCcccc
Q 009053 6 SEIQINPYTFSKMTELRFLKFYGSENKCMVS-SLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLW 80 (545)
Q Consensus 6 ~~~~~~~~~f~~m~~Lr~L~l~~~~~~~l~~-~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~ 80 (545)
....+.+.+|+++++||+|++++|....++. .|..++ +|++|++++|.++.+ ...+.+|++|+|++|+++.++
T Consensus 63 ~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~--~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~ 140 (635)
T 4g8a_A 63 PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS--HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 140 (635)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT--TCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCST
T ss_pred CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCC--CCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCC
Confidence 4456778888999999999998887777764 578887 899999999888887 346788999999998888877
Q ss_pred c-cccCCCCccEEEecCCCCCCC-CCC-CCCCCCccEEEeeCCCCCcccccccc--------------------------
Q 009053 81 D-DVQNLVNLKKIDLWYSKLLTK-LPD-LSLAQNLEILDLGGCSSLTETHSSIQ-------------------------- 131 (545)
Q Consensus 81 ~-~~~~l~~L~~LdLs~~~~~~~-~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~-------------------------- 131 (545)
. .++++++|+.|+|++|.+... .|. ++.+++|++|++++|......+..+.
T Consensus 141 ~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~ 220 (635)
T 4g8a_A 141 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 220 (635)
T ss_dssp TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccc
Confidence 5 478888899999988877543 343 66788888888887643221111111
Q ss_pred --------------------------------------------------------------------------------
Q 009053 132 -------------------------------------------------------------------------------- 131 (545)
Q Consensus 132 -------------------------------------------------------------------------------- 131 (545)
T Consensus 221 ~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 300 (635)
T 4g8a_A 221 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIID 300 (635)
T ss_dssp TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTT
T ss_pred ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhh
Confidence
Q ss_pred -------------------------CCCCCCEEEecCCCCCC--------------------ccCCccCCccccEEeecC
Q 009053 132 -------------------------YLNKLEVLDLDRCESLR--------------------TLPTSIQSKYLKRLVLRG 166 (545)
Q Consensus 132 -------------------------~l~~L~~L~L~~c~~l~--------------------~lp~~~~l~~L~~L~L~~ 166 (545)
....|+.|++.+|.... ..+....+++|+.|++++
T Consensus 301 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~ 380 (635)
T 4g8a_A 301 LFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR 380 (635)
T ss_dssp TTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCS
T ss_pred hhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhc
Confidence 01122222222221100 001111334455555554
Q ss_pred CCCCC--CCCccccC--CccEEEcccccCcccCccccCCCCCCEEEecCCCCCcccc-ccccCCCCCcEEEEeCCCCCCc
Q 009053 167 CSNLK--NFPEISSS--GIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLP-SSLSMFKSLTSLEIIYCPKLKR 241 (545)
Q Consensus 167 c~~l~--~~p~~~~~--~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~Ls~c~~~~~ 241 (545)
+.... ..+..... .++.+++..+.+..++..+..+++|+.+++..+......+ ..+..+++++.++++.|.....
T Consensus 381 n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~ 460 (635)
T 4g8a_A 381 NGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 460 (635)
T ss_dssp SCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEEC
T ss_pred cccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccc
Confidence 33211 11111111 1888999988888888888888999999988876655444 3467788888888888887777
Q ss_pred cccccCCCCCCcEEEecCccCc--CCCccCCCCCCCcEEeccCCcCCCc-chhhhcCCCCCCEEeccCCcCccccCC---
Q 009053 242 LPDELGNLKALEELRVEGTAIR--RPPESLGQLSSLQILSLSDNSNLER-APESIRHLSKLTSLFISDCKMLQTLPE--- 315 (545)
Q Consensus 242 lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~-lp~~l~~l~~L~~L~L~~c~~l~~ip~--- 315 (545)
.+..+..+++|+.|++++|.+. ..|..+..+++|+.|+|++| .++. .|..+.++++|+.|+|++|+. +.++.
T Consensus 461 ~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~l-~~l~~~~~ 538 (635)
T 4g8a_A 461 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPY 538 (635)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCC-CBCCCGGG
T ss_pred cccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCcC-CCCChhHH
Confidence 7778888888888888887644 35777888888888888888 5554 466788888888888888764 44432
Q ss_pred -CCCCccEEeccCCCCCCccCCcccC--CcccEEEEcCCC
Q 009053 316 -LPCNLHDLDASGCTSLEALPASLSS--KFYLSVDLSNCL 352 (545)
Q Consensus 316 -~~~sL~~L~l~~c~~L~~l~~~~~~--~~~~~l~l~~C~ 352 (545)
..++|+.|++++|......+..+.. ..++.|++++.+
T Consensus 539 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 539 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred hCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 2367888888887443333333321 234577877644
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=5.5e-24 Score=214.80 Aligned_cols=227 Identities=27% Similarity=0.346 Sum_probs=193.0
Q ss_pred CCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCcc-CCccccEEe
Q 009053 85 NLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI-QSKYLKRLV 163 (545)
Q Consensus 85 ~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~ 163 (545)
..++++.|+|++|.+....+.+..+++|++|+|++|... .+|..++.+++|++|++++|. +..+|..+ .+++|+.|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEE
Confidence 457999999999988744445888999999999998655 899999999999999999985 44888877 899999999
Q ss_pred ecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccc
Q 009053 164 LRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLP 243 (545)
Q Consensus 164 L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp 243 (545)
+++|..++.+|..... ..++..+..+++|+.|++++|... .+|..+..+++|++|++++|... .+|
T Consensus 157 L~~n~~~~~~p~~~~~------------~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~ 222 (328)
T 4fcg_A 157 IRACPELTELPEPLAS------------TDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALG 222 (328)
T ss_dssp EEEETTCCCCCSCSEE------------EC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCC
T ss_pred CCCCCCccccChhHhh------------ccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCc
Confidence 9999888887764322 123345677999999999998665 88999999999999999999876 477
Q ss_pred cccCCCCCCcEEEecCccCc-CCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccccCCCC---CC
Q 009053 244 DELGNLKALEELRVEGTAIR-RPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLPELP---CN 319 (545)
Q Consensus 244 ~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip~~~---~s 319 (545)
..++.+++|++|++++|.+. .+|..++.+++|+.|+|++|...+.+|..+..+++|+.|+|++|+.++.+|+.. ++
T Consensus 223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 78999999999999998776 778999999999999999997888999999999999999999999999999865 45
Q ss_pred ccEEeccC
Q 009053 320 LHDLDASG 327 (545)
Q Consensus 320 L~~L~l~~ 327 (545)
|+.+++..
T Consensus 303 L~~l~l~~ 310 (328)
T 4fcg_A 303 NCIILVPP 310 (328)
T ss_dssp TCEEECCG
T ss_pred ceEEeCCH
Confidence 56665543
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=1.1e-22 Score=223.11 Aligned_cols=329 Identities=20% Similarity=0.190 Sum_probs=242.5
Q ss_pred CCCcEEEeeCCCCcccc-CCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCccccc-cccCCCCccEE
Q 009053 19 TELRFLKFYGSENKCMV-SSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLWD-DVQNLVNLKKI 92 (545)
Q Consensus 19 ~~Lr~L~l~~~~~~~l~-~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L 92 (545)
++++.|++++|....+| ..|..++ +|++|++++|.++.+ ...+++|++|+|++|+++.++. .+.++++|++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~--~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFP--ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCT--TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCC--CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 47999999999888887 5799998 999999999999988 3468999999999999999885 57999999999
Q ss_pred EecCCCCCCCCCC-CCCCCCccEEEeeCCCCCc-cccccccCCCCCCEEEecCCCCCCccCCcc-C--------------
Q 009053 93 DLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLT-ETHSSIQYLNKLEVLDLDRCESLRTLPTSI-Q-------------- 155 (545)
Q Consensus 93 dLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~-~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~-------------- 155 (545)
+|++|.+....+. |+.+++|++|++++|.... .+|..++.+++|++|++++|...+..+..+ .
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 9999988765553 8999999999999987544 467888999999999999975322111110 0
Q ss_pred -------------Ccc----------------------------------------------------------------
Q 009053 156 -------------SKY---------------------------------------------------------------- 158 (545)
Q Consensus 156 -------------l~~---------------------------------------------------------------- 158 (545)
...
T Consensus 210 ~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 210 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred cCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 001
Q ss_pred ----------------------------------------ccEEeecCCCCCCCCCc----------------------c
Q 009053 159 ----------------------------------------LKRLVLRGCSNLKNFPE----------------------I 176 (545)
Q Consensus 159 ----------------------------------------L~~L~L~~c~~l~~~p~----------------------~ 176 (545)
|+.|++.+|.. ..++. .
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEE-SSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred hhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccc-cCcCcccchhhhhcccccccCCCCcccc
Confidence 11111111100 00000 0
Q ss_pred ccCCccEEEcccccCcc---cCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccc-cccCCCCCC
Q 009053 177 SSSGIHRLDLTHVGIKE---LPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLP-DELGNLKAL 252 (545)
Q Consensus 177 ~~~~L~~L~l~~~~i~~---lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp-~~l~~l~~L 252 (545)
....++.|+++.|.+.. .+.....+.+|+.|++..+... .++..+..+++|+.+++.++......+ ..+..++++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccccc
Confidence 00015555666555543 3445667889999999987654 355567889999999999887665544 567889999
Q ss_pred cEEEecCccCcCC-CccCCCCCCCcEEeccCCcCCC-cchhhhcCCCCCCEEeccCCcCccccCCC---CCCccEEeccC
Q 009053 253 EELRVEGTAIRRP-PESLGQLSSLQILSLSDNSNLE-RAPESIRHLSKLTSLFISDCKMLQTLPEL---PCNLHDLDASG 327 (545)
Q Consensus 253 ~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~c~~l~~ip~~---~~sL~~L~l~~ 327 (545)
+.++++.|.+..+ +..+..+++|+.|++++|.... .+|..+..+++|+.|+|++|+..+..|.. .++|+.|++++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 9999999999854 6677889999999999995454 46778999999999999999765555543 46899999999
Q ss_pred CCCCCccCCc-ccC-CcccEEEEcCCC
Q 009053 328 CTSLEALPAS-LSS-KFYLSVDLSNCL 352 (545)
Q Consensus 328 c~~L~~l~~~-~~~-~~~~~l~l~~C~ 352 (545)
| .++.++.. +.. ..++.|+++++.
T Consensus 528 N-~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 528 N-NFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp S-CCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred C-cCCCCChhHHhCCCCCCEEECCCCc
Confidence 7 56666543 221 335688888763
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=4.1e-22 Score=216.80 Aligned_cols=264 Identities=23% Similarity=0.237 Sum_probs=214.9
Q ss_pred CCCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcccccccCccEEEcCCCCCccccccccCCCCccEEEecCC
Q 009053 18 MTELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTLDIHAENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYS 97 (545)
Q Consensus 18 m~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~ 97 (545)
..+++.|+++++....+|..+. + +|++|++++|.++.+...+++|++|+|++|+++.+|. .+++|+.|+|++|
T Consensus 39 ~~~l~~L~ls~n~L~~lp~~l~--~--~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPDCLP--A--HITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp HHCCCEEECCSSCCSCCCSCCC--T--TCSEEEECSCCCSCCCCCCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCCCcEEEecCCCcCccChhhC--C--CCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 3579999999988788887653 4 9999999999999884478999999999999999887 7899999999999
Q ss_pred CCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCCCCCCCccc
Q 009053 98 KLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSNLKNFPEIS 177 (545)
Q Consensus 98 ~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~ 177 (545)
.+.. +|. .+++|+.|++++|. +..+|.. +++|++|++++| .+..+|. ..++|+.|++++|. ++.+|...
T Consensus 112 ~l~~-l~~--~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~--~~~~L~~L~L~~N~-l~~l~~~~ 180 (622)
T 3g06_A 112 PLTH-LPA--LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPA--LPSELCKLWAYNNQ-LTSLPMLP 180 (622)
T ss_dssp CCCC-CCC--CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSCCCCCC
T ss_pred cCCC-CCC--CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCC--ccCCCCEEECCCCC-CCCCcccC
Confidence 7755 444 67899999999885 5556654 489999999998 4556665 35789999999864 66677443
Q ss_pred cCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEe
Q 009053 178 SSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRV 257 (545)
Q Consensus 178 ~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L 257 (545)
.. |+.|++++|.++++|.. +++|+.|++++|... .+|. .+++|+.|++++|...+ +| ..+++|+.|++
T Consensus 181 ~~-L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~L 248 (622)
T 3g06_A 181 SG-LQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMV 248 (622)
T ss_dssp TT-CCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEEC
T ss_pred CC-CcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEEC
Confidence 33 99999999999998864 478999999997644 5554 35889999999986544 66 56688999999
Q ss_pred cCccCcCCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccccCC
Q 009053 258 EGTAIRRPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLPE 315 (545)
Q Consensus 258 ~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip~ 315 (545)
++|.++.+|. .+++|+.|+|++| .++.+|..+.++++|+.|+|++|+..+..|.
T Consensus 249 s~N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 249 SGNRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCCCCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 9999998887 6789999999999 8889999999999999999999987766554
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=207.03 Aligned_cols=261 Identities=18% Similarity=0.157 Sum_probs=158.5
Q ss_pred CccEEEeCCCCCCcc-cccccCccEEEcCCCCCccccc-cccCCCCccEEEecCCCCCCCCCC-CCCCCCccEEEeeCCC
Q 009053 45 EVRYFEWHQYPLKTL-DIHAENLVSLKMPGSKVKQLWD-DVQNLVNLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGGCS 121 (545)
Q Consensus 45 ~Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~ 121 (545)
.....+.+++.++.+ ....++|++|+++++.++.++. .+..+++|+.|+|++|.+....+. ++.+++|++|++++|.
T Consensus 32 ~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp TTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 444566677777777 4344578888888888887765 677888888888888876665553 7778888888888775
Q ss_pred CCccccc-cccCCCCCCEEEecCCCCCCccCC--cc-CCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCcc
Q 009053 122 SLTETHS-SIQYLNKLEVLDLDRCESLRTLPT--SI-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSS 197 (545)
Q Consensus 122 ~l~~~~~-~i~~l~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~ 197 (545)
.. .++. .++.+++|++|++++|. +..+|. .+ .+++|+.|++++|..++.++ +..
T Consensus 112 l~-~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~--------------------~~~ 169 (353)
T 2z80_A 112 LS-NLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQ--------------------RKD 169 (353)
T ss_dssp CS-SCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--------------------TTT
T ss_pred CC-cCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccC--------------------HHH
Confidence 44 4443 37778888888888764 445655 33 67777777777765444332 223
Q ss_pred ccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCcccc-ccCCCCCCcEEEecCccCcCCCc----cCCCC
Q 009053 198 IDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPD-ELGNLKALEELRVEGTAIRRPPE----SLGQL 272 (545)
Q Consensus 198 ~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~-~l~~l~~L~~L~L~~n~l~~lp~----~l~~l 272 (545)
+..+++|+.|++++|...+..|..+..+++|++|++++|... .+|. .+..+++|+.|++++|.++.++. .....
T Consensus 170 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~ 248 (353)
T 2z80_A 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248 (353)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CC
T ss_pred ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccccccc
Confidence 455555666666665555555555556666666666665542 2332 23345666666666666654321 12234
Q ss_pred CCCcEEeccCCcCCC-----cchhhhcCCCCCCEEeccCCcCccccCCC----CCCccEEeccCCCC
Q 009053 273 SSLQILSLSDNSNLE-----RAPESIRHLSKLTSLFISDCKMLQTLPEL----PCNLHDLDASGCTS 330 (545)
Q Consensus 273 ~~L~~L~L~~n~~~~-----~lp~~l~~l~~L~~L~L~~c~~l~~ip~~----~~sL~~L~l~~c~~ 330 (545)
+.++.++++++ .+. .+|..+..+++|+.|++++|+. +.+|.. .++|++|++++|+.
T Consensus 249 ~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 249 SLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRNQL-KSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCB
T ss_pred chhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCCCC-CccCHHHHhcCCCCCEEEeeCCCc
Confidence 55666666665 333 3556666666777777766643 355532 34666666666643
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=1.3e-22 Score=202.56 Aligned_cols=238 Identities=20% Similarity=0.230 Sum_probs=131.9
Q ss_pred EEEeCCCCCCcc-cccccCccEEEcCCCCCcccccc-ccCCCCccEEEecCCCCCCCC---CCCCCCCCccEEEeeCCCC
Q 009053 48 YFEWHQYPLKTL-DIHAENLVSLKMPGSKVKQLWDD-VQNLVNLKKIDLWYSKLLTKL---PDLSLAQNLEILDLGGCSS 122 (545)
Q Consensus 48 ~L~l~~~~l~~l-~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~LdLs~~~~~~~~---p~l~~l~~L~~L~L~~c~~ 122 (545)
.+++++..++.+ ...+++|++|+++++.++.++.. +..+++|+.|+|++|.+.... +.+..+++|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~- 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG- 89 (306)
T ss_dssp EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-
T ss_pred EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-
Confidence 455555555555 33345666666666666666544 466666666666666554221 123445666666666653
Q ss_pred CccccccccCCCCCCEEEecCCCCCCccCC--cc-CCccccEEeecCCCCCCCCCccccCCccEEEcccccCccc-Cccc
Q 009053 123 LTETHSSIQYLNKLEVLDLDRCESLRTLPT--SI-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKEL-PSSI 198 (545)
Q Consensus 123 l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~l-p~~~ 198 (545)
+..++..+..+++|++|++++|.. ..++. .+ .+++|+.|++++| .+... +..+
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n----------------------~l~~~~~~~~ 146 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHT----------------------HTRVAFNGIF 146 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEE-ESSTTTTTTTTCTTCCEEECTTS----------------------CCEECSTTTT
T ss_pred cccChhhcCCCCCCCEEECCCCcc-cccccchhhhhccCCCEEECCCC----------------------cCCccchhhc
Confidence 334555566666666666666532 22221 12 4555555555554 33332 2334
Q ss_pred cCCCCCCEEEecCCCCCc-cccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCc-cCCCCCCCc
Q 009053 199 DRLSKLDTLKIHDCTSLE-SLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPE-SLGQLSSLQ 276 (545)
Q Consensus 199 ~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~ 276 (545)
..+++|+.|++++|...+ .+|..+..+++|++|++++|...+..|..++.+++|++|++++|.++.++. .+..+++|+
T Consensus 147 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 226 (306)
T 2z66_A 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226 (306)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCC
T ss_pred ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCC
Confidence 555666666666655444 345555666666666666665555555566666666666666666665533 455566666
Q ss_pred EEeccCCcCCCcchhhhcCCC-CCCEEeccCCcC
Q 009053 277 ILSLSDNSNLERAPESIRHLS-KLTSLFISDCKM 309 (545)
Q Consensus 277 ~L~L~~n~~~~~lp~~l~~l~-~L~~L~L~~c~~ 309 (545)
.|++++|...+..|..+..++ +|+.|++++|+.
T Consensus 227 ~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp EEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred EeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 666666633334455555553 666666666654
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=1.7e-21 Score=205.36 Aligned_cols=240 Identities=20% Similarity=0.231 Sum_probs=149.1
Q ss_pred CccEEEeCCCCCCcc-cccccCccEEEcCCCCCccc-cccccCCCCccEEEecCCCCCCCCC-CCCCCCCccEEEeeCCC
Q 009053 45 EVRYFEWHQYPLKTL-DIHAENLVSLKMPGSKVKQL-WDDVQNLVNLKKIDLWYSKLLTKLP-DLSLAQNLEILDLGGCS 121 (545)
Q Consensus 45 ~Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~LdLs~~~~~~~~p-~l~~l~~L~~L~L~~c~ 121 (545)
..+.++..+..++.+ ...+++|++|+|++|+++.+ +..+.++++|+.|+|++|.+....+ .+..+++|++|+|++|.
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 456777777777777 44567889999999888876 4667888999999999887766554 37888899999998876
Q ss_pred CCccccccccCCCCCCEEEecCCCCCCccCCc-c-CCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCcccc
Q 009053 122 SLTETHSSIQYLNKLEVLDLDRCESLRTLPTS-I-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSID 199 (545)
Q Consensus 122 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~ 199 (545)
.....+..+..+++|++|++++|. +..+|.. + .+++|+.|++++|..++.++.. .+.
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~--------------------~~~ 193 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEG--------------------AFE 193 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTT--------------------TTT
T ss_pred CCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChh--------------------hcc
Confidence 544444557888899999998875 4555553 3 7888888888887777665532 233
Q ss_pred CCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCC-CccCCCCCCCcEE
Q 009053 200 RLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRP-PESLGQLSSLQIL 278 (545)
Q Consensus 200 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L 278 (545)
.+++|+.|++++|... .+| .+..+++|+.|++++|...+..|..+.++++|+.|++++|.++.+ +..+..+++|+.|
T Consensus 194 ~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 194 GLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp TCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence 3444444444444322 222 234444455555555444444444555555555555555555433 3344555555555
Q ss_pred eccCCcCCCcch-hhhcCCCCCCEEeccCCc
Q 009053 279 SLSDNSNLERAP-ESIRHLSKLTSLFISDCK 308 (545)
Q Consensus 279 ~L~~n~~~~~lp-~~l~~l~~L~~L~L~~c~ 308 (545)
+|++| .++.+| ..+..+++|+.|+|++|+
T Consensus 272 ~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 272 NLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 55555 444333 223445555555555553
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=7.1e-21 Score=207.09 Aligned_cols=230 Identities=25% Similarity=0.235 Sum_probs=117.2
Q ss_pred CccEEEeCCCCCCcc-cccccCccEEEcCCCCCccccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCC
Q 009053 45 EVRYFEWHQYPLKTL-DIHAENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSL 123 (545)
Q Consensus 45 ~Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l 123 (545)
.++.|+++++.++.+ ...+++|++|++++|+++.+|. .+++|+.|+|++|.+. .+|. .+++|++|++++|. +
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~--~l~~L~~L~Ls~N~-l 113 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT-SLPV--LPPGLLELSIFSNP-L 113 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS-CCCC--CCTTCCEEEECSCC-C
T ss_pred CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC-cCCC--CCCCCCEEECcCCc-C
Confidence 466666666666666 3233566666666666666655 4566666666666543 3443 55666666666653 3
Q ss_pred ccccccccCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCC
Q 009053 124 TETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSK 203 (545)
Q Consensus 124 ~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~ 203 (545)
..+|. .+++|+.|++++|. +..+|.. +++|+.|++++| .++.+|..... |+.|++++|.++.+| ..+++
T Consensus 114 ~~l~~---~l~~L~~L~L~~N~-l~~lp~~--l~~L~~L~Ls~N-~l~~l~~~~~~-L~~L~L~~N~l~~l~---~~~~~ 182 (622)
T 3g06_A 114 THLPA---LPSGLCKLWIFGNQ-LTSLPVL--PPGLQELSVSDN-QLASLPALPSE-LCKLWAYNNQLTSLP---MLPSG 182 (622)
T ss_dssp CCCCC---CCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSS-CCSCCCCCCTT-CCEEECCSSCCSCCC---CCCTT
T ss_pred CCCCC---CCCCcCEEECCCCC-CCcCCCC--CCCCCEEECcCC-cCCCcCCccCC-CCEEECCCCCCCCCc---ccCCC
Confidence 33443 45566666666653 4445442 355666666654 33444443322 555555555555555 33455
Q ss_pred CCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCccCCCCCCCcEEeccCC
Q 009053 204 LDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPESLGQLSSLQILSLSDN 283 (545)
Q Consensus 204 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n 283 (545)
|+.|++++|... .+|. .+++|+.|++++|... .+|. .+++|+.|++++|.++.+| ..+++|+.|+|++|
T Consensus 183 L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 183 LQELSVSDNQLA-SLPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGN 251 (622)
T ss_dssp CCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS
T ss_pred CcEEECCCCCCC-CCCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCC
Confidence 555555554432 2332 1244455555444322 2222 1244444455444444444 23344444444444
Q ss_pred cCCCcchhhhcCCCCCCEEeccCC
Q 009053 284 SNLERAPESIRHLSKLTSLFISDC 307 (545)
Q Consensus 284 ~~~~~lp~~l~~l~~L~~L~L~~c 307 (545)
.++.+|. .+++|+.|++++|
T Consensus 252 -~L~~lp~---~~~~L~~L~Ls~N 271 (622)
T 3g06_A 252 -RLTSLPM---LPSGLLSLSVYRN 271 (622)
T ss_dssp -CCSCCCC---CCTTCCEEECCSS
T ss_pred -CCCcCCc---ccccCcEEeCCCC
Confidence 4444443 3344444444444
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=2.8e-22 Score=198.02 Aligned_cols=215 Identities=21% Similarity=0.211 Sum_probs=129.7
Q ss_pred EEEeCCCCCCcc-cccccCccEEEcCCCCCcccc-ccccCCCCccEEEecCCCCCCCCC-CCCCCCCccEEEeeCCCCCc
Q 009053 48 YFEWHQYPLKTL-DIHAENLVSLKMPGSKVKQLW-DDVQNLVNLKKIDLWYSKLLTKLP-DLSLAQNLEILDLGGCSSLT 124 (545)
Q Consensus 48 ~L~l~~~~l~~l-~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~LdLs~~~~~~~~p-~l~~l~~L~~L~L~~c~~l~ 124 (545)
.+++++..++.+ ...+++|++|+++++.++.++ ..+..+++|+.|+|++|.+....| .+..+++|++|++++|..+.
T Consensus 15 ~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~ 94 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94 (285)
T ss_dssp EEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred EEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc
Confidence 344444444444 223445555555555555444 234555555555555554443333 24555555555555554333
Q ss_pred cc-cccccCCCCCCEEEecCCCCCCccCCcc-CCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCcc-ccCC
Q 009053 125 ET-HSSIQYLNKLEVLDLDRCESLRTLPTSI-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSS-IDRL 201 (545)
Q Consensus 125 ~~-~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~-~~~l 201 (545)
.+ +..+..+++|++|++++|......|..+ .+++ |++|++++|.+.+++.. +..+
T Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~----------------------L~~L~l~~n~l~~~~~~~~~~l 152 (285)
T 1ozn_A 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA----------------------LQYLYLQDNALQALPDDTFRDL 152 (285)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT----------------------CCEEECCSSCCCCCCTTTTTTC
T ss_pred ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC----------------------CCEEECCCCcccccCHhHhccC
Confidence 33 3445555555555555543322222222 3333 55555555555555543 6778
Q ss_pred CCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCc-cCCCCCCCcEEec
Q 009053 202 SKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPE-SLGQLSSLQILSL 280 (545)
Q Consensus 202 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L 280 (545)
++|+.|++++|......+..+..+++|+.|++++|...+..|..++.+++|+.|++++|.++.++. .+..+++|+.|++
T Consensus 153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEec
Confidence 888888888876554444457778888888888888777778888888888888888888887764 4778888888888
Q ss_pred cCCc
Q 009053 281 SDNS 284 (545)
Q Consensus 281 ~~n~ 284 (545)
++|+
T Consensus 233 ~~N~ 236 (285)
T 1ozn_A 233 NDNP 236 (285)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8883
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=1.7e-21 Score=204.64 Aligned_cols=240 Identities=21% Similarity=0.253 Sum_probs=143.0
Q ss_pred CccEEEeCCCCCCcc-cccccCccEEEcCCCCCcccc-ccccCCCCccEEEecCCCCCCCCC-CCCCCCCccEEEeeCCC
Q 009053 45 EVRYFEWHQYPLKTL-DIHAENLVSLKMPGSKVKQLW-DDVQNLVNLKKIDLWYSKLLTKLP-DLSLAQNLEILDLGGCS 121 (545)
Q Consensus 45 ~Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~LdLs~~~~~~~~p-~l~~l~~L~~L~L~~c~ 121 (545)
..+.++..+..++.+ ...+++++.|+|++|+++.++ ..+.++++|+.|+|++|.+....+ .|..+++|++|+|++|.
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 456777777777777 445577888888888888665 567788888888888877655443 37778888888888875
Q ss_pred CCccccccccCCCCCCEEEecCCCCCCccCC-cc-CCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCcccc
Q 009053 122 SLTETHSSIQYLNKLEVLDLDRCESLRTLPT-SI-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSID 199 (545)
Q Consensus 122 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~-~~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~ 199 (545)
.....+..+..+++|++|++++|. +..++. .+ .+++|+.|++++|..++.++.. .+.
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~--------------------~~~ 182 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEG--------------------AFE 182 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTT--------------------TTT
T ss_pred CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcc--------------------hhh
Confidence 443333467778888888888865 445544 23 6778888888777666554432 233
Q ss_pred CCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCC-CccCCCCCCCcEE
Q 009053 200 RLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRP-PESLGQLSSLQIL 278 (545)
Q Consensus 200 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L 278 (545)
.+++|+.|++++|... .+|. +..+++|+.|++++|...+..|..+.++++|+.|++++|.++.+ +..+..+++|+.|
T Consensus 183 ~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 260 (440)
T 3zyj_A 183 GLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260 (440)
T ss_dssp TCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEE
T ss_pred cccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEE
Confidence 3444444444444322 2332 34444555555555544444444555555555555555555533 3344555555555
Q ss_pred eccCCcCCCcch-hhhcCCCCCCEEeccCCc
Q 009053 279 SLSDNSNLERAP-ESIRHLSKLTSLFISDCK 308 (545)
Q Consensus 279 ~L~~n~~~~~lp-~~l~~l~~L~~L~L~~c~ 308 (545)
+|++| .++.+| ..+..+++|+.|+|++|+
T Consensus 261 ~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 261 NLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 55555 444333 234455555555555554
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=6.5e-22 Score=195.41 Aligned_cols=222 Identities=22% Similarity=0.234 Sum_probs=180.3
Q ss_pred ccEEEcCCCCCccccccccCCCCccEEEecCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCC
Q 009053 66 LVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRC 144 (545)
Q Consensus 66 L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c 144 (545)
-++++.+++.++.+|.++ .++|+.|+|++|.+....+. +..+++|++|++++|......+..+..+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 378889999999998654 57999999999988765554 889999999999998665555778889999999999998
Q ss_pred CCCCcc-CCcc-CCccccEEeecCCCCCCCCCccccCCccEEEcccccCccc-CccccCCCCCCEEEecCCCCCcccccc
Q 009053 145 ESLRTL-PTSI-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKEL-PSSIDRLSKLDTLKIHDCTSLESLPSS 221 (545)
Q Consensus 145 ~~l~~l-p~~~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~ 221 (545)
..++.+ |..+ .+++|+.|++++ |.+.++ |..+..+++|++|++++|......+..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~----------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 148 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDR----------------------CGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTT----------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCccccCHHHhcCCcCCCEEECCC----------------------CcCCEECHhHhhCCcCCCEEECCCCcccccCHhH
Confidence 756666 3333 566665555555 444444 456788999999999998877666666
Q ss_pred ccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCC-CccCCCCCCCcEEeccCCcCCCcch-hhhcCCCCC
Q 009053 222 LSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRP-PESLGQLSSLQILSLSDNSNLERAP-ESIRHLSKL 299 (545)
Q Consensus 222 l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L 299 (545)
+..+++|++|++++|...+..+..+..+++|+.|++++|.++.+ |..+..+++|+.|++++| .++.+| ..+..+++|
T Consensus 149 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRAL 227 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTC
T ss_pred hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCccc
Confidence 88999999999999987665566799999999999999999965 888999999999999999 676665 568999999
Q ss_pred CEEeccCCcCccc
Q 009053 300 TSLFISDCKMLQT 312 (545)
Q Consensus 300 ~~L~L~~c~~l~~ 312 (545)
+.|++++|+....
T Consensus 228 ~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 228 QYLRLNDNPWVCD 240 (285)
T ss_dssp CEEECCSSCEECS
T ss_pred CEEeccCCCccCC
Confidence 9999999976543
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=1e-21 Score=200.13 Aligned_cols=269 Identities=17% Similarity=0.182 Sum_probs=164.8
Q ss_pred CCCCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCcccc-ccccCCCCccE
Q 009053 17 KMTELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLW-DDVQNLVNLKK 91 (545)
Q Consensus 17 ~m~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~ 91 (545)
.++.....+.+++....+|.++ + .+|+.|+++++.++.+ ...+++|++|++++|.++.++ ..+..+++|++
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~---~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGL---T-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTC---C-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcccccccc---c-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 4455666777666666677543 3 4889999999988877 456788999999999988764 56888999999
Q ss_pred EEecCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccc--cccCCCCCCEEEecCCCCCCccCC-cc-CCccccEEeecC
Q 009053 92 IDLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHS--SIQYLNKLEVLDLDRCESLRTLPT-SI-QSKYLKRLVLRG 166 (545)
Q Consensus 92 LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~--~i~~l~~L~~L~L~~c~~l~~lp~-~~-~l~~L~~L~L~~ 166 (545)
|+|++|.+....+. ++.+++|++|++++|.. ..++. .+..+++|++|++++|..++.++. .+ .+++|+.|++++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 99999887654444 78889999999998754 45655 678899999999999866666643 33 677777777777
Q ss_pred CCCCCCCCccccCC--ccEEEcccccCcccCccc-cCCCCCCEEEecCCCCCccccccc---cCCCCCcEEEEeCCCCCC
Q 009053 167 CSNLKNFPEISSSG--IHRLDLTHVGIKELPSSI-DRLSKLDTLKIHDCTSLESLPSSL---SMFKSLTSLEIIYCPKLK 240 (545)
Q Consensus 167 c~~l~~~p~~~~~~--L~~L~l~~~~i~~lp~~~-~~l~~L~~L~L~~~~~l~~lp~~l---~~l~~L~~L~Ls~c~~~~ 240 (545)
|......|...... |++|++++|.+..+|..+ ..+++|+.|++++|...+..+..+ ...+.++.++++++...+
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 65333323332222 555555555555444432 234555555555554333222111 123334444444433322
Q ss_pred ccccccCCCCCCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchhhh-cCCCCCCEEeccCCcCc
Q 009053 241 RLPDELGNLKALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPESI-RHLSKLTSLFISDCKML 310 (545)
Q Consensus 241 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l-~~l~~L~~L~L~~c~~l 310 (545)
+.+..+|..+..+++|+.|++++| .++.+|..+ ..+++|++|++++|+..
T Consensus 264 -------------------~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 264 -------------------ESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp -------------------HHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -------------------cchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 111123444555555555555555 455555443 55555666666555543
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=2.1e-21 Score=193.68 Aligned_cols=237 Identities=19% Similarity=0.210 Sum_probs=190.1
Q ss_pred cEEEcCCCCCccccccccCCCCccEEEecCCCCCCCCCC-CCCCCCccEEEeeCCCCCc--cccccccCCCCCCEEEecC
Q 009053 67 VSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLT--ETHSSIQYLNKLEVLDLDR 143 (545)
Q Consensus 67 ~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~--~~~~~i~~l~~L~~L~L~~ 143 (545)
+.++..++.++.+|..+. ++|+.|+|++|.+....+. +..+++|++|++++|.... ..+..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 578888899999987654 6899999999987644333 7899999999999886442 2356677789999999998
Q ss_pred CCCCCccCCcc-CCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCc--cccCCCCCCEEEecCCCCCccccc
Q 009053 144 CESLRTLPTSI-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPS--SIDRLSKLDTLKIHDCTSLESLPS 220 (545)
Q Consensus 144 c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~L~~~~~l~~lp~ 220 (545)
|. +..+|..+ .+++ |+.|++++|.+.+++. .+..+++|+.|++++|...+..+.
T Consensus 88 n~-i~~l~~~~~~l~~----------------------L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 144 (306)
T 2z66_A 88 NG-VITMSSNFLGLEQ----------------------LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144 (306)
T ss_dssp CS-EEEEEEEEETCTT----------------------CCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT
T ss_pred Cc-cccChhhcCCCCC----------------------CCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh
Confidence 74 33454433 4444 4555555555666553 678899999999999988888888
Q ss_pred cccCCCCCcEEEEeCCCCCC-ccccccCCCCCCcEEEecCccCcCC-CccCCCCCCCcEEeccCCcCCCcch-hhhcCCC
Q 009053 221 SLSMFKSLTSLEIIYCPKLK-RLPDELGNLKALEELRVEGTAIRRP-PESLGQLSSLQILSLSDNSNLERAP-ESIRHLS 297 (545)
Q Consensus 221 ~l~~l~~L~~L~Ls~c~~~~-~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~ 297 (545)
.+..+++|++|++++|...+ .+|..++.+++|++|++++|.++.+ |..+..+++|+.|++++| .++.++ ..+..++
T Consensus 145 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLN 223 (306)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCT
T ss_pred hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcc
Confidence 89999999999999998776 5788999999999999999999966 778899999999999999 666554 4688999
Q ss_pred CCCEEeccCCcCccccCC----CCCCccEEeccCCC
Q 009053 298 KLTSLFISDCKMLQTLPE----LPCNLHDLDASGCT 329 (545)
Q Consensus 298 ~L~~L~L~~c~~l~~ip~----~~~sL~~L~l~~c~ 329 (545)
+|+.|++++|+..+..|. .+++|++|++++|+
T Consensus 224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 999999999987766553 44689999999874
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=8.4e-21 Score=199.38 Aligned_cols=238 Identities=19% Similarity=0.257 Sum_probs=191.7
Q ss_pred CCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCcccc-ccccCCCCccEEEe
Q 009053 20 ELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLW-DDVQNLVNLKKIDL 94 (545)
Q Consensus 20 ~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~LdL 94 (545)
..+.++.++.....+|.++ + .+++.|+++++.++.+ ...+++|++|+|++|.++.++ ..+..+++|+.|+|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~---~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGI---S-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCSSCCSCC---C-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcCcCCCCC---C-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 3556666555555666543 4 5899999999999887 567899999999999999776 67899999999999
Q ss_pred cCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCcc--CCccccEEeecCCCCCC
Q 009053 95 WYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI--QSKYLKRLVLRGCSNLK 171 (545)
Q Consensus 95 s~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~ 171 (545)
++|.+....+. +..+++|++|+|++|......+..+..+++|++|++++|..+..++... .+++|+.|++++|
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n---- 195 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC---- 195 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS----
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC----
Confidence 99987765553 8899999999999987655555578899999999999998888887643 6677666666664
Q ss_pred CCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCC
Q 009053 172 NFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKA 251 (545)
Q Consensus 172 ~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~ 251 (545)
.++.+| .+..+++|+.|+|++|...+..|..+..+++|+.|++++|......+..+.++++
T Consensus 196 ------------------~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 196 ------------------NLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256 (440)
T ss_dssp ------------------CCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred ------------------cCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence 334444 3667788888888888777766778888889999999888887777888889999
Q ss_pred CcEEEecCccCcCCCc-cCCCCCCCcEEeccCCc
Q 009053 252 LEELRVEGTAIRRPPE-SLGQLSSLQILSLSDNS 284 (545)
Q Consensus 252 L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~ 284 (545)
|+.|++++|.++.+|. .+..+++|+.|+|++|+
T Consensus 257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 9999999999997764 45788999999999983
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.87 E-value=2.3e-24 Score=227.67 Aligned_cols=129 Identities=15% Similarity=0.136 Sum_probs=69.8
Q ss_pred hhCCCCCcEEEeeCCCCc-----cccCCcCCCCCCCccEEEeCCCCCCcc-----ccccc----CccEEEcCCCCCc---
Q 009053 15 FSKMTELRFLKFYGSENK-----CMVSSLEGVPFTEVRYFEWHQYPLKTL-----DIHAE----NLVSLKMPGSKVK--- 77 (545)
Q Consensus 15 f~~m~~Lr~L~l~~~~~~-----~l~~~l~~l~~~~Lr~L~l~~~~l~~l-----~~~~~----~L~~L~L~~~~l~--- 77 (545)
|..+++|+.|+++++... .++..+..++ +|++|+++++.+... ...+. +|++|++++|.+.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~--~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 101 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNP--ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 101 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCT--TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCC--CcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHH
Confidence 566666666666665433 3344555555 666666666665442 11222 4666666666665
Q ss_pred --cccccccCCCCccEEEecCCCCCCCCCC------CCCCCCccEEEeeCCCCCc----cccccccCCCCCCEEEecCCC
Q 009053 78 --QLWDDVQNLVNLKKIDLWYSKLLTKLPD------LSLAQNLEILDLGGCSSLT----ETHSSIQYLNKLEVLDLDRCE 145 (545)
Q Consensus 78 --~l~~~~~~l~~L~~LdLs~~~~~~~~p~------l~~l~~L~~L~L~~c~~l~----~~~~~i~~l~~L~~L~L~~c~ 145 (545)
.++..+..+++|+.|+|++|.+....+. ....++|++|++++|.... .++..+..+++|++|++++|.
T Consensus 102 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 102 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 3455566666666666666654321110 1224456666666664333 223444555666666666654
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=1.3e-20 Score=198.68 Aligned_cols=236 Identities=19% Similarity=0.229 Sum_probs=191.2
Q ss_pred CcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCcccc-ccccCCCCccEEEec
Q 009053 21 LRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLW-DDVQNLVNLKKIDLW 95 (545)
Q Consensus 21 Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~LdLs 95 (545)
.+.++.++.....+|.+ ++ .+|++|+++++.++.+ ...+++|++|+|++|.++.++ ..+..+++|+.|+|+
T Consensus 56 ~~~v~c~~~~l~~iP~~---~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQG---IP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSSCCSC---CC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCccCCC---CC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 45666655555556653 44 5999999999999887 567899999999999999776 678999999999999
Q ss_pred CCCCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCcc--CCccccEEeecCCCCCCC
Q 009053 96 YSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI--QSKYLKRLVLRGCSNLKN 172 (545)
Q Consensus 96 ~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~ 172 (545)
+|.+....+. +..+++|++|+|++|......+..+..+++|+.|++++|..++.++... .+++|+.|++++|
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n----- 206 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC----- 206 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-----
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-----
Confidence 9987765554 8899999999999987554444578899999999999998888887643 6666666666664
Q ss_pred CCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCC
Q 009053 173 FPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKAL 252 (545)
Q Consensus 173 ~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L 252 (545)
.++++| .+..+++|+.|+|++|...+..|..+..+++|+.|++++|...+..+..+..+++|
T Consensus 207 -----------------~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 207 -----------------NIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp -----------------CCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred -----------------cccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 344443 36678888888888888777778888888999999999888877778888999999
Q ss_pred cEEEecCccCcCCCc-cCCCCCCCcEEeccCC
Q 009053 253 EELRVEGTAIRRPPE-SLGQLSSLQILSLSDN 283 (545)
Q Consensus 253 ~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n 283 (545)
+.|++++|.++.+|. .+..+++|+.|+|++|
T Consensus 269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 999999999987764 4678899999999998
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=3.3e-23 Score=218.75 Aligned_cols=314 Identities=18% Similarity=0.180 Sum_probs=225.3
Q ss_pred hhhhhCCCCCcEEEeeCCCCccc-----cCCcCCCCCCCccEEEeCCCCCCc-----c---cccccCccEEEcCCCCCcc
Q 009053 12 PYTFSKMTELRFLKFYGSENKCM-----VSSLEGVPFTEVRYFEWHQYPLKT-----L---DIHAENLVSLKMPGSKVKQ 78 (545)
Q Consensus 12 ~~~f~~m~~Lr~L~l~~~~~~~l-----~~~l~~l~~~~Lr~L~l~~~~l~~-----l---~~~~~~L~~L~L~~~~l~~ 78 (545)
+.+|.++++|++|++++|..... ...+.... .+|++|++++|.+.. + ...+++|++|++++|.+..
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS-CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTT-CCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCC-CceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence 56788999999999998755431 12233222 279999999999884 2 5678899999999999873
Q ss_pred c-----ccc-ccCCCCccEEEecCCCCCCCC----C-CCCCCCCccEEEeeCCCCCcccccccc-----CCCCCCEEEec
Q 009053 79 L-----WDD-VQNLVNLKKIDLWYSKLLTKL----P-DLSLAQNLEILDLGGCSSLTETHSSIQ-----YLNKLEVLDLD 142 (545)
Q Consensus 79 l-----~~~-~~~l~~L~~LdLs~~~~~~~~----p-~l~~l~~L~~L~L~~c~~l~~~~~~i~-----~l~~L~~L~L~ 142 (545)
. ... ....++|+.|+|++|.+.... + .+..+++|++|++++|......+..+. ..++|++|+++
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 207 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc
Confidence 2 222 234678999999999776532 2 255679999999999875433333332 46799999999
Q ss_pred CCCCCCc----cCCcc-CCccccEEeecCCCCCCCC------Cccc--cCCccEEEcccccCcc-----cCccccCCCCC
Q 009053 143 RCESLRT----LPTSI-QSKYLKRLVLRGCSNLKNF------PEIS--SSGIHRLDLTHVGIKE-----LPSSIDRLSKL 204 (545)
Q Consensus 143 ~c~~l~~----lp~~~-~l~~L~~L~L~~c~~l~~~------p~~~--~~~L~~L~l~~~~i~~-----lp~~~~~l~~L 204 (545)
+|..... ++..+ .+++|+.|++++|. ++.. +... ...|+.|++++|.++. ++..+..+++|
T Consensus 208 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 286 (461)
T 1z7x_W 208 SCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286 (461)
T ss_dssp TSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTC
T ss_pred CCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCc
Confidence 9864432 45444 78999999999985 3321 1111 1229999999999887 77788889999
Q ss_pred CEEEecCCCCCcccccccc-----CCCCCcEEEEeCCCCCCc----cccccCCCCCCcEEEecCccCcCC-C----ccCC
Q 009053 205 DTLKIHDCTSLESLPSSLS-----MFKSLTSLEIIYCPKLKR----LPDELGNLKALEELRVEGTAIRRP-P----ESLG 270 (545)
Q Consensus 205 ~~L~L~~~~~l~~lp~~l~-----~l~~L~~L~Ls~c~~~~~----lp~~l~~l~~L~~L~L~~n~l~~l-p----~~l~ 270 (545)
+.|++++|......+..+. ..++|++|++++|..... ++..+..+++|++|++++|.++.. + ..+.
T Consensus 287 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 366 (461)
T 1z7x_W 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG 366 (461)
T ss_dssp CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred ceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHc
Confidence 9999999876443332222 236899999999987654 566777889999999999988733 2 2222
Q ss_pred -CCCCCcEEeccCCcCCC-----cchhhhcCCCCCCEEeccCCcCccc--------cCCCCCCccEEeccCC
Q 009053 271 -QLSSLQILSLSDNSNLE-----RAPESIRHLSKLTSLFISDCKMLQT--------LPELPCNLHDLDASGC 328 (545)
Q Consensus 271 -~l~~L~~L~L~~n~~~~-----~lp~~l~~l~~L~~L~L~~c~~l~~--------ip~~~~sL~~L~l~~c 328 (545)
..++|+.|++++| .++ .+|..+..+++|++|++++|+.... +|...+.|+.|.+.++
T Consensus 367 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 367 QPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp STTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred CCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccc
Confidence 2679999999999 666 6888888899999999999875432 3444446666666554
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=4.8e-22 Score=199.61 Aligned_cols=216 Identities=17% Similarity=0.146 Sum_probs=110.2
Q ss_pred cccCccEEEcCCCCCcccc-ccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEE
Q 009053 62 HAENLVSLKMPGSKVKQLW-DDVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLD 140 (545)
Q Consensus 62 ~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~ 140 (545)
.+++|++|++++|.++.++ ..+..+++|+.|+|++|.+....+ +..+++|++|++++|. +..++ ..++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE----ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc----CCCCcCEEE
Confidence 3445666666666666543 445566666666666655543322 5555666666666553 22222 235555555
Q ss_pred ecCCCCCCccCCccCCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCc-cccCCCCCCEEEecCCCCCcccc
Q 009053 141 LDRCESLRTLPTSIQSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPS-SIDRLSKLDTLKIHDCTSLESLP 219 (545)
Q Consensus 141 L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp 219 (545)
+++|.. ..++.. .+++ |+.|++++|.+++++. .+..+++|+.|++++|......+
T Consensus 106 l~~n~l-~~~~~~-~~~~----------------------L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 106 AANNNI-SRVSCS-RGQG----------------------KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp CCSSCC-SEEEEC-CCSS----------------------CEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred CCCCcc-CCcCcc-ccCC----------------------CCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 555432 222111 2334 4555555555554432 44455555555555554444333
Q ss_pred ccc-cCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCC
Q 009053 220 SSL-SMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPESIRHLSK 298 (545)
Q Consensus 220 ~~l-~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~ 298 (545)
..+ ..+++|++|++++|...+. + ....+++|++|++++|.++.+|..+..+++|+.|++++| .++.+|..+..+++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~ 238 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQN 238 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTT
T ss_pred HHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCC
Confidence 333 2455555555555543322 2 122355555566655555555555555555666666655 55555555555555
Q ss_pred CCEEeccCCcCc
Q 009053 299 LTSLFISDCKML 310 (545)
Q Consensus 299 L~~L~L~~c~~l 310 (545)
|+.|++++|+..
T Consensus 239 L~~L~l~~N~~~ 250 (317)
T 3o53_A 239 LEHFDLRGNGFH 250 (317)
T ss_dssp CCEEECTTCCCB
T ss_pred CCEEEccCCCcc
Confidence 666666555544
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=6.1e-22 Score=198.38 Aligned_cols=240 Identities=19% Similarity=0.207 Sum_probs=144.2
Q ss_pred CccEEEeCCCCCCcc-cccccCccEEEcCCCCCc--ccccccc-------CCCCccEEEecCCCCCCCCCC-C--CCCCC
Q 009053 45 EVRYFEWHQYPLKTL-DIHAENLVSLKMPGSKVK--QLWDDVQ-------NLVNLKKIDLWYSKLLTKLPD-L--SLAQN 111 (545)
Q Consensus 45 ~Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~~~l~--~l~~~~~-------~l~~L~~LdLs~~~~~~~~p~-l--~~l~~ 111 (545)
+|++|++.++.+ .+ ..-...|++|+++++.++ .++..+. .+++|++|+|++|.+.+..|. + ..+++
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 122 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD 122 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCC
T ss_pred CceeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCC
Confidence 455555555555 33 111223666677776664 2444333 577777777777777655554 3 66777
Q ss_pred ccEEEeeCCCCCccccccccCC-----CCCCEEEecCCCCCCccCCcc-CCccccEEeecCCCCCCCCCccccCCccEEE
Q 009053 112 LEILDLGGCSSLTETHSSIQYL-----NKLEVLDLDRCESLRTLPTSI-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLD 185 (545)
Q Consensus 112 L~~L~L~~c~~l~~~~~~i~~l-----~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~ 185 (545)
|++|++++|..... |..++.+ ++|++|++++|......|..+ .+++|+.|++++|...+..
T Consensus 123 L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------------ 189 (312)
T 1wwl_A 123 LNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER------------ 189 (312)
T ss_dssp CSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH------------
T ss_pred ccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch------------
Confidence 77777777654433 5555554 677777777765433333444 5666666666655422210
Q ss_pred cccccCcccCccc--cCCCCCCEEEecCCCCCc--ccc-ccccCCCCCcEEEEeCCCCCCccc-cccCCCCCCcEEEecC
Q 009053 186 LTHVGIKELPSSI--DRLSKLDTLKIHDCTSLE--SLP-SSLSMFKSLTSLEIIYCPKLKRLP-DELGNLKALEELRVEG 259 (545)
Q Consensus 186 l~~~~i~~lp~~~--~~l~~L~~L~L~~~~~l~--~lp-~~l~~l~~L~~L~Ls~c~~~~~lp-~~l~~l~~L~~L~L~~ 259 (545)
.+|..+ ..+++|+.|++++|.... .++ ..+..+++|+.|++++|...+..| ..+..+++|++|++++
T Consensus 190 -------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~ 262 (312)
T 1wwl_A 190 -------GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262 (312)
T ss_dssp -------HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTT
T ss_pred -------HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCC
Confidence 122222 556667777777665442 222 223456677777777766665554 3455567777777777
Q ss_pred ccCcCCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcC
Q 009053 260 TAIRRPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKM 309 (545)
Q Consensus 260 n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~ 309 (545)
|.++.+|..+. ++|+.|+|++| .++.+|. +..+++|+.|++++|+.
T Consensus 263 N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 263 TGLKQVPKGLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp SCCSSCCSSCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred CccChhhhhcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCC
Confidence 77777777665 77777888777 6666665 77777777777777754
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=1e-21 Score=197.25 Aligned_cols=238 Identities=11% Similarity=0.049 Sum_probs=141.8
Q ss_pred ChhhhhCCCCCcEEEeeCCCCcccc-CCcCCCCCCCccEEEeCCCCCCcc--cccccCccEEEcCCCCCccccccccCCC
Q 009053 11 NPYTFSKMTELRFLKFYGSENKCMV-SSLEGVPFTEVRYFEWHQYPLKTL--DIHAENLVSLKMPGSKVKQLWDDVQNLV 87 (545)
Q Consensus 11 ~~~~f~~m~~Lr~L~l~~~~~~~l~-~~l~~l~~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~~~l~~l~~~~~~l~ 87 (545)
....|..+++|+.|++++|....++ ..+..++ +|++|++++|.+... ...+++|++|++++|.++.++. .+
T Consensus 26 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~----~~ 99 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFT--KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GP 99 (317)
T ss_dssp HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCT--TCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE----CT
T ss_pred HHHHhccCCCCCEEECcCCccCcCCHHHhhCCC--cCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC----CC
Confidence 3455666677777777776555554 4667776 777777777777655 5566777777777777776552 36
Q ss_pred CccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCcc--CCccccEEeec
Q 009053 88 NLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI--QSKYLKRLVLR 165 (545)
Q Consensus 88 ~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~ 165 (545)
+|+.|++++|.+....+. .+++|++|++++|......+..++.+++|++|++++|......+..+ .+++|+.|+++
T Consensus 100 ~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 100 SIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp TCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 777777777766543332 35677777777776555445566677777777777765443333333 45666666666
Q ss_pred CCCCCCCCCcccc-CCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCC-Cccc
Q 009053 166 GCSNLKNFPEISS-SGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKL-KRLP 243 (545)
Q Consensus 166 ~c~~l~~~p~~~~-~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~-~~lp 243 (545)
+|. ++.++.... ..|+.|++++|.++++|..+..+++|+.|++++|... .+|..+..+++|+.|++++|... +.+|
T Consensus 178 ~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 178 YNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (317)
T ss_dssp TSC-CCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred CCc-CcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHH
Confidence 654 333332221 1156666666666555555555556666666555333 34555555555555555555554 3444
Q ss_pred cccCCCCCCcEEEec
Q 009053 244 DELGNLKALEELRVE 258 (545)
Q Consensus 244 ~~l~~l~~L~~L~L~ 258 (545)
..++.+++|+.+++.
T Consensus 256 ~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 256 DFFSKNQRVQTVAKQ 270 (317)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHhccccceEEECC
Confidence 555555555555554
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=4.3e-21 Score=204.06 Aligned_cols=214 Identities=16% Similarity=0.139 Sum_probs=107.2
Q ss_pred cCccEEEcCCCCCcccc-ccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEec
Q 009053 64 ENLVSLKMPGSKVKQLW-DDVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLD 142 (545)
Q Consensus 64 ~~L~~L~L~~~~l~~l~-~~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~ 142 (545)
++|++|+|++|.+..++ ..+..+++|+.|+|++|.+....| ++.+++|+.|+|++|. +..++ ..++|++|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~----~~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE----ECTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC----CCCCcCEEECc
Confidence 35666666666665443 455566666666666655443333 5555556666665553 22222 12455555555
Q ss_pred CCCCCCccCCccCCccccEEeecCCCCCCCCCccccCCccEEEcccccCccc-CccccCCCCCCEEEecCCCCCcccccc
Q 009053 143 RCESLRTLPTSIQSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKEL-PSSIDRLSKLDTLKIHDCTSLESLPSS 221 (545)
Q Consensus 143 ~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~ 221 (545)
+|.... ++. ..+++ |+.|++++|.+.++ |..++.+++|+.|++++|...+..|..
T Consensus 108 ~N~l~~-~~~-~~l~~----------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (487)
T 3oja_A 108 NNNISR-VSC-SRGQG----------------------KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (487)
T ss_dssp SSCCCC-EEE-CCCSS----------------------CEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGG
T ss_pred CCcCCC-CCc-cccCC----------------------CCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHH
Confidence 543222 111 02233 44444444444443 234455555555555555554444444
Q ss_pred cc-CCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCC
Q 009053 222 LS-MFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLT 300 (545)
Q Consensus 222 l~-~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~ 300 (545)
+. .+++|+.|++++|...+. | ....+++|+.|++++|.++.+|..+..+++|+.|+|++| .+..+|..+..+++|+
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~ 240 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLE 240 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCC
T ss_pred HhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCC
Confidence 43 455555555555544333 1 122355555555555555555555555555555555555 4555555555555555
Q ss_pred EEeccCCcCc
Q 009053 301 SLFISDCKML 310 (545)
Q Consensus 301 ~L~L~~c~~l 310 (545)
.|++++|+..
T Consensus 241 ~L~l~~N~l~ 250 (487)
T 3oja_A 241 HFDLRGNGFH 250 (487)
T ss_dssp EEECTTCCBC
T ss_pred EEEcCCCCCc
Confidence 5555555443
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=3.4e-19 Score=174.97 Aligned_cols=214 Identities=19% Similarity=0.210 Sum_probs=118.1
Q ss_pred cCCCCCccccccccCCCCccEEEecCCCCCCCCC-CCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCc
Q 009053 71 MPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLP-DLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRT 149 (545)
Q Consensus 71 L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p-~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~ 149 (545)
..+.++..+|..+. ++|+.|++++|.+....+ .+..+++|++|++++|......+..+..+++|++|++++|.....
T Consensus 14 c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 14 CMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp CTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred ecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 33344444444332 345555555554443333 345555555555555533332333455555555555555432222
Q ss_pred cCCcc-CCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCc-cccCCCCCCEEEecCCCCCc-cccccccCCC
Q 009053 150 LPTSI-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPS-SIDRLSKLDTLKIHDCTSLE-SLPSSLSMFK 226 (545)
Q Consensus 150 lp~~~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~-~lp~~l~~l~ 226 (545)
.+..+ .+++|+.|++++| .+.+++. .++.+++|+.|++++|.... .+|..+..++
T Consensus 92 ~~~~~~~l~~L~~L~l~~n----------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~ 149 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVET----------------------NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149 (276)
T ss_dssp CTTTTTTCTTCCEEECTTS----------------------CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred ChhhhcCCccccEEECCCC----------------------CccccCchhcccCCCCCEEECcCCccceecCchhhccCC
Confidence 22222 3444444444333 2222222 34556666666666655443 3466666666
Q ss_pred CCcEEEEeCCCCCCccccccCCCCCCc----EEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchhh-hcCCCCCCE
Q 009053 227 SLTSLEIIYCPKLKRLPDELGNLKALE----ELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPES-IRHLSKLTS 301 (545)
Q Consensus 227 ~L~~L~Ls~c~~~~~lp~~l~~l~~L~----~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~-l~~l~~L~~ 301 (545)
+|++|++++|...+..+..+..+++|+ .|++++|.++.++.......+|+.|++++| .++.+|.. +..+++|+.
T Consensus 150 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 228 (276)
T 2z62_A 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQK 228 (276)
T ss_dssp TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCE
T ss_pred CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccE
Confidence 666666666665555455555555555 777888888777666666667888888888 56666543 467788888
Q ss_pred EeccCCcC
Q 009053 302 LFISDCKM 309 (545)
Q Consensus 302 L~L~~c~~ 309 (545)
|++++|+.
T Consensus 229 L~l~~N~~ 236 (276)
T 2z62_A 229 IWLHTNPW 236 (276)
T ss_dssp EECCSSCB
T ss_pred EEccCCcc
Confidence 88887764
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=2.6e-20 Score=198.08 Aligned_cols=228 Identities=11% Similarity=0.069 Sum_probs=151.1
Q ss_pred CCcEEEeeCCCCcccc-CCcCCCCCCCccEEEeCCCCCCcc--cccccCccEEEcCCCCCccccccccCCCCccEEEecC
Q 009053 20 ELRFLKFYGSENKCMV-SSLEGVPFTEVRYFEWHQYPLKTL--DIHAENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWY 96 (545)
Q Consensus 20 ~Lr~L~l~~~~~~~l~-~~l~~l~~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~ 96 (545)
+|+.|++++|....++ ..+..++ +|++|++++|.+... ...+++|++|+|++|.++.++.. ++|+.|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFT--KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG----PSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCT--TCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCC--CCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC----CCcCEEECcC
Confidence 8899999887666654 5788887 888999888888766 56778888888888888876643 7888888888
Q ss_pred CCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCcc--CCccccEEeecCCCCCCCCC
Q 009053 97 SKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI--QSKYLKRLVLRGCSNLKNFP 174 (545)
Q Consensus 97 ~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~p 174 (545)
|.+....+. .+++|+.|++++|......|..++.+++|+.|++++|...+..|..+ .+++|+.|++++|. ++.+|
T Consensus 109 N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~ 185 (487)
T 3oja_A 109 NNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK 185 (487)
T ss_dssp SCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE
T ss_pred CcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccccc
Confidence 877655443 46788888888887666667778888888888888876555455544 56777777777765 33333
Q ss_pred ccccC-CccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCC-CccccccCCCCCC
Q 009053 175 EISSS-GIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKL-KRLPDELGNLKAL 252 (545)
Q Consensus 175 ~~~~~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~-~~lp~~l~~l~~L 252 (545)
..... .|+.|++++|.++++|+.+..+++|+.|++++|... .+|..+..+++|+.|++++|... +.+|..++.++.|
T Consensus 186 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 186 GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence 22211 166666666666666555555666666666655433 34555555555555555555544 3444444444444
Q ss_pred cEEEe
Q 009053 253 EELRV 257 (545)
Q Consensus 253 ~~L~L 257 (545)
+.+++
T Consensus 265 ~~l~~ 269 (487)
T 3oja_A 265 QTVAK 269 (487)
T ss_dssp HHHHH
T ss_pred cEEec
Confidence 44444
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=4.1e-21 Score=192.34 Aligned_cols=243 Identities=17% Similarity=0.183 Sum_probs=169.3
Q ss_pred cccCccEEEcCCCCCccccccccCCCCccEEEecCCCCC-CCCCC-CC-------CCCCccEEEeeCCCCCccccccc--
Q 009053 62 HAENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLL-TKLPD-LS-------LAQNLEILDLGGCSSLTETHSSI-- 130 (545)
Q Consensus 62 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~-~~~p~-l~-------~l~~L~~L~L~~c~~l~~~~~~i-- 130 (545)
...+|++|+++++.+ .+|..+... |+.|+|++|.+. ..+|+ +. .+++|++|++++|...+.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 445677777777777 666655433 777777776652 23333 22 46777777777776655666655
Q ss_pred cCCCCCCEEEecCCCCCCccCCcc-CCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccC-ccccCCCCCCEEE
Q 009053 131 QYLNKLEVLDLDRCESLRTLPTSI-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELP-SSIDRLSKLDTLK 208 (545)
Q Consensus 131 ~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~ 208 (545)
+.+++|++|++++|...+ +|..+ .+.. .....|++|++++|.+.+++ ..++.+++|+.|+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~-----------------~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 179 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWAT-RDAWLAELQQ-----------------WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD 179 (312)
T ss_dssp CCSCCCSEEEEESCBCSS-SSSHHHHHHT-----------------TCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEE
T ss_pred hcCCCccEEEccCCCCcc-hhHHHHHHHH-----------------hhcCCCcEEEeeCCCCccchHHHhccCCCCCEEE
Confidence 677777777777764333 34433 2200 00011666666666777766 6788999999999
Q ss_pred ecCCCCCcc--ccccc--cCCCCCcEEEEeCCCCCC--ccc-cccCCCCCCcEEEecCccCcCCC--ccCCCCCCCcEEe
Q 009053 209 IHDCTSLES--LPSSL--SMFKSLTSLEIIYCPKLK--RLP-DELGNLKALEELRVEGTAIRRPP--ESLGQLSSLQILS 279 (545)
Q Consensus 209 L~~~~~l~~--lp~~l--~~l~~L~~L~Ls~c~~~~--~lp-~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~ 279 (545)
+++|...+. +|..+ ..+++|++|++++|...+ .++ ..+..+++|++|++++|.++..+ ..+..+++|+.|+
T Consensus 180 Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 259 (312)
T 1wwl_A 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259 (312)
T ss_dssp CCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEE
T ss_pred CCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEE
Confidence 999987765 34444 789999999999998763 233 34567899999999999998654 4566789999999
Q ss_pred ccCCcCCCcchhhhcCCCCCCEEeccCCcCccccCC--CCCCccEEeccCCC
Q 009053 280 LSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLPE--LPCNLHDLDASGCT 329 (545)
Q Consensus 280 L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip~--~~~sL~~L~l~~c~ 329 (545)
|++| .++.+|..+. ++|+.|++++|+. +.+|. ..++|++|++++++
T Consensus 260 Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~l-~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 260 LSFT-GLKQVPKGLP--AKLSVLDLSYNRL-DRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CTTS-CCSSCCSSCC--SEEEEEECCSSCC-CSCCCTTTSCEEEEEECTTCT
T ss_pred CCCC-ccChhhhhcc--CCceEEECCCCCC-CCChhHhhCCCCCEEeccCCC
Confidence 9999 7889998776 8999999999864 44465 23678888888864
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=2.3e-18 Score=170.36 Aligned_cols=200 Identities=23% Similarity=0.230 Sum_probs=132.7
Q ss_pred ccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccccEE
Q 009053 83 VQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRL 162 (545)
Q Consensus 83 ~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L 162 (545)
+.++++|+.++++++.+....+.+. ++++.|++++|......+..+..+++|+.|++++|. ++.++....+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~---- 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPV---- 78 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTT----
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCCCCCCc----
Confidence 3455666666666655443222232 566777777666554555667777777777777753 333332222233
Q ss_pred eecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCcc
Q 009053 163 VLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRL 242 (545)
Q Consensus 163 ~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~l 242 (545)
|+.|++++|.+..+|..+..+++|+.|++++|......+..+..+++|+.|++++|......
T Consensus 79 ------------------L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 140 (290)
T 1p9a_G 79 ------------------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140 (290)
T ss_dssp ------------------CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred ------------------CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC
Confidence 55555555566666777777788888888887665555566777788888888877666555
Q ss_pred ccccCCCCCCcEEEecCccCcCCCcc-CCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCc
Q 009053 243 PDELGNLKALEELRVEGTAIRRPPES-LGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCK 308 (545)
Q Consensus 243 p~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~ 308 (545)
+..+..+++|+.|++++|.++.+|.. +..+++|+.|+|++| .++.+|..+..+++|+.|++++|+
T Consensus 141 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 56677788888888888888877654 466788888888888 777788777777777777777665
No 71
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=1.5e-18 Score=176.46 Aligned_cols=233 Identities=19% Similarity=0.213 Sum_probs=160.7
Q ss_pred cEEEeCCCCCCcc-cccccCccEEEcCCCCCccccc-cccCCCCccEEEecCCCCCCCCCC--CCCCCCccEEEeeCCCC
Q 009053 47 RYFEWHQYPLKTL-DIHAENLVSLKMPGSKVKQLWD-DVQNLVNLKKIDLWYSKLLTKLPD--LSLAQNLEILDLGGCSS 122 (545)
Q Consensus 47 r~L~l~~~~l~~l-~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~LdLs~~~~~~~~p~--l~~l~~L~~L~L~~c~~ 122 (545)
+.++.+++.++.+ ..-+.++++|+|++|+|+.++. .+.++++|++|+|++|.+.+.+|. |..+++|+++...++..
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 4566667777776 3335688899999999998885 478999999999999988776663 77888888765555555
Q ss_pred Cccc-cccccCCCCCCEEEecCCCCCCccCCcc--CCccccEEeecCCCCCCCCCccccC----CccEEEcccccCcccC
Q 009053 123 LTET-HSSIQYLNKLEVLDLDRCESLRTLPTSI--QSKYLKRLVLRGCSNLKNFPEISSS----GIHRLDLTHVGIKELP 195 (545)
Q Consensus 123 l~~~-~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~p~~~~~----~L~~L~l~~~~i~~lp 195 (545)
+..+ +..+..+++|++|++++|. +..+|... ...++..|++.++..+..++..... .++.|++++|.++++|
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred ccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 6655 5667889999999999875 44555433 5566777777776666655432111 1444445554444444
Q ss_pred ccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCcccc-ccCCCCCCcEEEecCccCcCCCccCCCCCC
Q 009053 196 SSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPD-ELGNLKALEELRVEGTAIRRPPESLGQLSS 274 (545)
Q Consensus 196 ~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~ 274 (545)
..+ ....+|++|++.+++.++.+|. .++.+++|++|++++|.++.+|.. .+.+
T Consensus 171 ~~~------------------------f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~ 224 (350)
T 4ay9_X 171 NSA------------------------FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLEN 224 (350)
T ss_dssp TTS------------------------STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTT
T ss_pred hhh------------------------ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhcc
Confidence 443 3444555555555555555553 467788888888888888888763 3677
Q ss_pred CcEEeccCCcCCCcchhhhcCCCCCCEEeccCC
Q 009053 275 LQILSLSDNSNLERAPESIRHLSKLTSLFISDC 307 (545)
Q Consensus 275 L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c 307 (545)
|+.|.+.++..++.+|. +..+++|+.+++.++
T Consensus 225 L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp CCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred chHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 88888877777888884 788888988888753
No 72
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=1.7e-20 Score=189.46 Aligned_cols=224 Identities=19% Similarity=0.207 Sum_probs=127.3
Q ss_pred ccCccEEEcCCCCCccccccccCC--CCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCcc-ccccccCCCCCCEE
Q 009053 63 AENLVSLKMPGSKVKQLWDDVQNL--VNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTE-THSSIQYLNKLEVL 139 (545)
Q Consensus 63 ~~~L~~L~L~~~~l~~l~~~~~~l--~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~-~~~~i~~l~~L~~L 139 (545)
+..++.++++++.+. +..+..+ ++++.|+++++.+....+.+..+++|++|++++|..... ++..+..+++|++|
T Consensus 46 ~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp STTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred chhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 344666777766655 3334444 677777777777666666666777777777777764433 66666777777777
Q ss_pred EecCCCCCCccCCcc-CCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCC-CCCcc
Q 009053 140 DLDRCESLRTLPTSI-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDC-TSLES 217 (545)
Q Consensus 140 ~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~-~~l~~ 217 (545)
++++|......+..+ .+++|+.|++++|..++. ..++..+..+++|+.|++++| .....
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~-------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~ 184 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE-------------------FALQTLLSSCSRLDELNLSWCFDFTEK 184 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH-------------------HHHHHHHHHCTTCCEEECCCCTTCCHH
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH-------------------HHHHHHHhcCCCCCEEcCCCCCCcChH
Confidence 777775333444434 566666666666643332 013333445555666666555 32221
Q ss_pred -ccccccCCC-CCcEEEEeCCC--CC-CccccccCCCCCCcEEEecCcc-Cc-CCCccCCCCCCCcEEeccCCcCCC-cc
Q 009053 218 -LPSSLSMFK-SLTSLEIIYCP--KL-KRLPDELGNLKALEELRVEGTA-IR-RPPESLGQLSSLQILSLSDNSNLE-RA 289 (545)
Q Consensus 218 -lp~~l~~l~-~L~~L~Ls~c~--~~-~~lp~~l~~l~~L~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L~~n~~~~-~l 289 (545)
++..+..++ +|++|++++|. .. +.+|..+..+++|+.|++++|. ++ ..+..+..+++|+.|++++|..+. ..
T Consensus 185 ~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH
Confidence 344455555 66666666552 22 3344455556666666666665 33 344455566666666666663221 11
Q ss_pred hhhhcCCCCCCEEeccCC
Q 009053 290 PESIRHLSKLTSLFISDC 307 (545)
Q Consensus 290 p~~l~~l~~L~~L~L~~c 307 (545)
...+.++++|+.|++++|
T Consensus 265 ~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 265 LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGCTTCCEEECTTS
T ss_pred HHHHhcCCCCCEEeccCc
Confidence 123556666666666666
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=2.6e-19 Score=175.56 Aligned_cols=117 Identities=19% Similarity=0.222 Sum_probs=77.7
Q ss_pred ccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCc-cCCCCCCCc
Q 009053 198 IDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPE-SLGQLSSLQ 276 (545)
Q Consensus 198 ~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~ 276 (545)
+..+++|+.|++++|...+..+..+..+++|+.|++++|...+..+..++.+++|+.|++++|.++.++. .+..+++|+
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 4455566666666654443333445666677777777766655555556777788888888888776654 467788888
Q ss_pred EEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccccCCCCCCcc
Q 009053 277 ILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLPELPCNLH 321 (545)
Q Consensus 277 ~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip~~~~sL~ 321 (545)
.|++++|. +. ..+++|+.|++..|...+.+|....++.
T Consensus 209 ~L~l~~N~-~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 209 YIWLHDNP-WD------CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp EEECCSSC-BC------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred EEEccCCC-cc------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 88888883 22 3456788888888887778877655543
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.79 E-value=4.3e-18 Score=167.09 Aligned_cols=211 Identities=19% Similarity=0.186 Sum_probs=148.2
Q ss_pred EeCCCCCCcc-cccccCccEEEcCCCCCccccc-cccCCCCccEEEecCCCCCCCCC-CCCCCCCccEEEeeCCCCCccc
Q 009053 50 EWHQYPLKTL-DIHAENLVSLKMPGSKVKQLWD-DVQNLVNLKKIDLWYSKLLTKLP-DLSLAQNLEILDLGGCSSLTET 126 (545)
Q Consensus 50 ~l~~~~l~~l-~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~LdLs~~~~~~~~p-~l~~l~~L~~L~L~~c~~l~~~ 126 (545)
+..+..+..+ ..-+++|++|+++++.++.++. .+..+++|+.|+|++|.+....+ .+..+++|++|++++|......
T Consensus 13 ~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 13 QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp ECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred EecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 3334444444 3334578888888888887664 67888888888888887765544 3778888888888888765555
Q ss_pred cccccCCCCCCEEEecCCCCCCccCCcc-CCccccEEeecCCCCCCCCCccccCCccEEEcccccCcc--cCccccCCCC
Q 009053 127 HSSIQYLNKLEVLDLDRCESLRTLPTSI-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKE--LPSSIDRLSK 203 (545)
Q Consensus 127 ~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~--lp~~~~~l~~ 203 (545)
+..+..+++|++|++++|......+..+ .+++|+.|++++ |.+.+ +|..+..+++
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----------------------n~l~~~~l~~~~~~l~~ 150 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH----------------------NLIQSFKLPEYFSNLTN 150 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS----------------------SCCCCCCCCGGGGGCTT
T ss_pred hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC----------------------CccceecCchhhccCCC
Confidence 5778888899999988875433222223 555555555554 44443 5677788888
Q ss_pred CCEEEecCCCCCccccccccCCCCCc----EEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCcc-CCCCCCCcEE
Q 009053 204 LDTLKIHDCTSLESLPSSLSMFKSLT----SLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPES-LGQLSSLQIL 278 (545)
Q Consensus 204 L~~L~L~~~~~l~~lp~~l~~l~~L~----~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L 278 (545)
|+.|++++|...+..+..+..+++|+ .|++++|...+..+ ......+|+.|++++|.++.+|.. +..+++|+.|
T Consensus 151 L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp CCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT-TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEE
T ss_pred CCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc-cccCCCcccEEECCCCceeecCHhHhcccccccEE
Confidence 88888888876665555565555555 88888877654433 334445899999999999988765 5789999999
Q ss_pred eccCC
Q 009053 279 SLSDN 283 (545)
Q Consensus 279 ~L~~n 283 (545)
++++|
T Consensus 230 ~l~~N 234 (276)
T 2z62_A 230 WLHTN 234 (276)
T ss_dssp ECCSS
T ss_pred EccCC
Confidence 99999
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=3.4e-20 Score=187.30 Aligned_cols=252 Identities=17% Similarity=0.184 Sum_probs=176.5
Q ss_pred CccEEEeCCCCCCcc-cccc--cCccEEEcCCCCCccccccccCCCCccEEEecCCCCCCC-CCC-CCCCCCccEEEeeC
Q 009053 45 EVRYFEWHQYPLKTL-DIHA--ENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTK-LPD-LSLAQNLEILDLGG 119 (545)
Q Consensus 45 ~Lr~L~l~~~~l~~l-~~~~--~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~-~p~-l~~l~~L~~L~L~~ 119 (545)
.++.++++++.+..- .... .+++.|+++++.+...+..+..+++|+.|+|++|.+... ++. +..+++|++|++++
T Consensus 48 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~ 127 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127 (336)
T ss_dssp TSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred hheeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC
Confidence 577888887766544 3333 789999999998887777778899999999999876543 443 67889999999999
Q ss_pred CCCCccccccccCCCCCCEEEecCCCCCCc--cCCcc-CCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCc
Q 009053 120 CSSLTETHSSIQYLNKLEVLDLDRCESLRT--LPTSI-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPS 196 (545)
Q Consensus 120 c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~--lp~~~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~ 196 (545)
|......+..++.+++|++|++++|..++. ++..+ .+++|+.|++++|..++. ..++.
T Consensus 128 ~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~-------------------~~~~~ 188 (336)
T 2ast_B 128 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE-------------------KHVQV 188 (336)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH-------------------HHHHH
T ss_pred cccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh-------------------HHHHH
Confidence 876667778888899999999999865553 55544 678888888887744432 12445
Q ss_pred cccCCC-CCCEEEecCCC--CC-ccccccccCCCCCcEEEEeCCC-CCCccccccCCCCCCcEEEecCcc-Cc-CCCccC
Q 009053 197 SIDRLS-KLDTLKIHDCT--SL-ESLPSSLSMFKSLTSLEIIYCP-KLKRLPDELGNLKALEELRVEGTA-IR-RPPESL 269 (545)
Q Consensus 197 ~~~~l~-~L~~L~L~~~~--~l-~~lp~~l~~l~~L~~L~Ls~c~-~~~~lp~~l~~l~~L~~L~L~~n~-l~-~lp~~l 269 (545)
.+..++ +|+.|++++|. .. ..+|..+..+++|++|++++|. .....+..++.+++|+.|++++|. +. .....+
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l 268 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 268 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH
Confidence 566777 88888888874 33 4556666778888888888887 445666677888888888888875 22 112256
Q ss_pred CCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccccCCCCC
Q 009053 270 GQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLPELPC 318 (545)
Q Consensus 270 ~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip~~~~ 318 (545)
..+++|+.|++++| .-......+. ..|+.|++++|...+..|....
T Consensus 269 ~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 269 GEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred hcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 77889999999988 2211111221 2355566777776666665443
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=2.9e-20 Score=202.46 Aligned_cols=330 Identities=15% Similarity=0.123 Sum_probs=187.9
Q ss_pred CCcEEEeeCCCCc---cccCCcCCCCCCCccEEEeCCCCCCcc--------cccccCccEEEcCCCCCc-----cccccc
Q 009053 20 ELRFLKFYGSENK---CMVSSLEGVPFTEVRYFEWHQYPLKTL--------DIHAENLVSLKMPGSKVK-----QLWDDV 83 (545)
Q Consensus 20 ~Lr~L~l~~~~~~---~l~~~l~~l~~~~Lr~L~l~~~~l~~l--------~~~~~~L~~L~L~~~~l~-----~l~~~~ 83 (545)
+|+.|+++++... .++.....++ +|+.|++++|.+... ...+++|++|+++++.+. .++..+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~--~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~ 216 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCR--KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCT--TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCC--CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence 4888888764311 1222223555 788888887764322 335677888888777765 334445
Q ss_pred cCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCC---ccccccccCCCCCCEEEecCCCCCCccCCcc-CCccc
Q 009053 84 QNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSL---TETHSSIQYLNKLEVLDLDRCESLRTLPTSI-QSKYL 159 (545)
Q Consensus 84 ~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l---~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L 159 (545)
..+++|+.|+|++|........+..+++|++|++.++... ...+..+..+++|+.|+++++ ....+|..+ .+++|
T Consensus 217 ~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQI 295 (592)
T ss_dssp HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGC
T ss_pred hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCC
Confidence 6777888888887765442223556677777777654332 233455667777777777764 344555555 67777
Q ss_pred cEEeecCCCCCCC--CCccccC--CccEEEcccccCc--ccCccccCCCCCCEEEecC----------CCCCcc--cccc
Q 009053 160 KRLVLRGCSNLKN--FPEISSS--GIHRLDLTHVGIK--ELPSSIDRLSKLDTLKIHD----------CTSLES--LPSS 221 (545)
Q Consensus 160 ~~L~L~~c~~l~~--~p~~~~~--~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~L~~----------~~~l~~--lp~~ 221 (545)
+.|++++|. +.. ++..... .|+.|++. +.+. .++.....+++|+.|++++ |..... ++..
T Consensus 296 ~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 296 RKLDLLYAL-LETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp CEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred cEEecCCCc-CCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence 777777776 322 1111111 17777776 3332 2444445677777777774 444332 2233
Q ss_pred ccCCCCCcEEEEeCCCCCCccccccCC-CCCCcEEEec----CccCcCCCc------cCCCCCCCcEEeccCCcC-CC-c
Q 009053 222 LSMFKSLTSLEIIYCPKLKRLPDELGN-LKALEELRVE----GTAIRRPPE------SLGQLSSLQILSLSDNSN-LE-R 288 (545)
Q Consensus 222 l~~l~~L~~L~Ls~c~~~~~lp~~l~~-l~~L~~L~L~----~n~l~~lp~------~l~~l~~L~~L~L~~n~~-~~-~ 288 (545)
...+++|++|+++.+...+..+..++. +++|+.|+++ .+.++..|. .+..+++|+.|+++.|.. ++ .
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 345677777777665555555555544 6777777775 445554332 244577777777765432 22 2
Q ss_pred chhhh-cCCCCCCEEeccCCcCcc-ccC---CCCCCccEEeccCCCCCCc--cCCcc-cCCcccEEEEcCCCCCCh
Q 009053 289 APESI-RHLSKLTSLFISDCKMLQ-TLP---ELPCNLHDLDASGCTSLEA--LPASL-SSKFYLSVDLSNCLKLDL 356 (545)
Q Consensus 289 lp~~l-~~l~~L~~L~L~~c~~l~-~ip---~~~~sL~~L~l~~c~~L~~--l~~~~-~~~~~~~l~l~~C~~L~~ 356 (545)
.+..+ ..+++|+.|++++|.... .++ ...++|+.|++++|. ++. ++... ....++.|++++|. ++.
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 22222 346777777777776432 122 334677777777776 332 11110 01234577777776 544
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=6.2e-18 Score=162.30 Aligned_cols=205 Identities=18% Similarity=0.167 Sum_probs=101.1
Q ss_pred CccccccccCCCCccEEEecCCCCCCCCC-CCCCCCCccEEEeeCCCCCccccc-cccCCCCCCEEEecCCCCCCccCCc
Q 009053 76 VKQLWDDVQNLVNLKKIDLWYSKLLTKLP-DLSLAQNLEILDLGGCSSLTETHS-SIQYLNKLEVLDLDRCESLRTLPTS 153 (545)
Q Consensus 76 l~~l~~~~~~l~~L~~LdLs~~~~~~~~p-~l~~l~~L~~L~L~~c~~l~~~~~-~i~~l~~L~~L~L~~c~~l~~lp~~ 153 (545)
++.+|. + .++|+.|++++|.+....+ .+..+++|++|++++|..++.++. .+..+++|++|++++|..++.++..
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 555554 2 2256666666665544333 255556666666665543333332 4455555555555553333333321
Q ss_pred cCCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCc---E
Q 009053 154 IQSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLT---S 230 (545)
Q Consensus 154 ~~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~---~ 230 (545)
.+..+++|+.|++++|...+ +|. +..+++|+ .
T Consensus 100 -------------------------------------------~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~ 134 (239)
T 2xwt_C 100 -------------------------------------------ALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFI 134 (239)
T ss_dssp -------------------------------------------SEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEE
T ss_pred -------------------------------------------HhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccE
Confidence 23333444444444433222 332 33444444 5
Q ss_pred EEEeCCCCCCcc-ccccCCCCCCc-EEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcch-hhhcCC-CCCCEEeccC
Q 009053 231 LEIIYCPKLKRL-PDELGNLKALE-ELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAP-ESIRHL-SKLTSLFISD 306 (545)
Q Consensus 231 L~Ls~c~~~~~l-p~~l~~l~~L~-~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l-~~L~~L~L~~ 306 (545)
|++++|..+..+ +..+..+++|+ .|++++|.++.+|......++|+.|++++|+.++.+| ..+..+ ++|+.|++++
T Consensus 135 L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp EEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred EECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 555555222222 23455566666 6666666666555544334566666666663355443 345556 6666666666
Q ss_pred CcCccccCC-CCCCccEEeccCCC
Q 009053 307 CKMLQTLPE-LPCNLHDLDASGCT 329 (545)
Q Consensus 307 c~~l~~ip~-~~~sL~~L~l~~c~ 329 (545)
|+. +.+|. .+++|+.|++.++.
T Consensus 215 N~l-~~l~~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 215 TSV-TALPSKGLEHLKELIARNTW 237 (239)
T ss_dssp CCC-CCCCCTTCTTCSEEECTTC-
T ss_pred Ccc-ccCChhHhccCceeeccCcc
Confidence 543 34443 34566666666553
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=2.9e-18 Score=164.57 Aligned_cols=204 Identities=17% Similarity=0.198 Sum_probs=127.4
Q ss_pred CCcc-cccccCccEEEcCCCCCccccc-cccCCCCccEEEecCCCCCCCCC--CCCCCCCccEEEeeCCCCCcccc-ccc
Q 009053 56 LKTL-DIHAENLVSLKMPGSKVKQLWD-DVQNLVNLKKIDLWYSKLLTKLP--DLSLAQNLEILDLGGCSSLTETH-SSI 130 (545)
Q Consensus 56 l~~l-~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~LdLs~~~~~~~~p--~l~~l~~L~~L~L~~c~~l~~~~-~~i 130 (545)
++.+ . .+.+|++|++++++++.++. .+..+++|+.|++++|..++.++ .+..+++|++|++++|..+..++ ..+
T Consensus 23 l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 23 IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 5555 4 56689999999999998886 68899999999999997444444 47899999999999855566665 578
Q ss_pred cCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCCCCCCCccccCCccEEEcccc-cCcccCcc-ccCCCCCC-EE
Q 009053 131 QYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHV-GIKELPSS-IDRLSKLD-TL 207 (545)
Q Consensus 131 ~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~-~i~~lp~~-~~~l~~L~-~L 207 (545)
..+++|++|++++|. +..+|....+++|+ . |+.|++++| .++.+|.. +..+++|+ .|
T Consensus 102 ~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~-----------~--------L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L 161 (239)
T 2xwt_C 102 KELPLLKFLGIFNTG-LKMFPDLTKVYSTD-----------I--------FFILEITDNPYMTSIPVNAFQGLCNETLTL 161 (239)
T ss_dssp ECCTTCCEEEEEEEC-CCSCCCCTTCCBCC-----------S--------EEEEEEESCTTCCEECTTTTTTTBSSEEEE
T ss_pred CCCCCCCEEeCCCCC-Cccccccccccccc-----------c--------ccEEECCCCcchhhcCcccccchhcceeEE
Confidence 899999999999975 44466522333333 0 224444445 55555543 56677777 77
Q ss_pred EecCCCCCccccccccCCCCCcEEEEeCCCCCCcc-ccccCCC-CCCcEEEecCccCcCCCccCCCCCCCcEEeccCC
Q 009053 208 KIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRL-PDELGNL-KALEELRVEGTAIRRPPESLGQLSSLQILSLSDN 283 (545)
Q Consensus 208 ~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~l-p~~l~~l-~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n 283 (545)
++++|... .+|......++|+.|++++|..+..+ +..+..+ ++|+.|++++|.++.+|.. .+++|+.|+++++
T Consensus 162 ~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 162 KLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp ECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred EcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 77766543 44443333355555555555322222 2334444 4444444444444444432 3444444444433
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=3.1e-17 Score=160.48 Aligned_cols=194 Identities=23% Similarity=0.300 Sum_probs=127.6
Q ss_pred CccEEEcCCCCCccccccccCCCCccEEEecCCCCCCCCC-CCCCCCCccEEEeeCCCCCccccc-cccCCCCCCEEEec
Q 009053 65 NLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLP-DLSLAQNLEILDLGGCSSLTETHS-SIQYLNKLEVLDLD 142 (545)
Q Consensus 65 ~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p-~l~~l~~L~~L~L~~c~~l~~~~~-~i~~l~~L~~L~L~ 142 (545)
+.+.+++++++++.+|..+. ++|+.|+|++|.+....+ .+..+++|++|++++|... .++. .+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence 45667777777776665543 567777777766554443 3666777777777766433 3333 34567777777777
Q ss_pred CCCCCCccCCc-c-CCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCc-cccCCCCCCEEEecCCCCCcccc
Q 009053 143 RCESLRTLPTS-I-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPS-SIDRLSKLDTLKIHDCTSLESLP 219 (545)
Q Consensus 143 ~c~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp 219 (545)
+|. +..+|.. + .+++|+.|++++ |.+..++. .+..+++|+.|++++|......+
T Consensus 94 ~n~-l~~~~~~~~~~l~~L~~L~l~~----------------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 150 (270)
T 2o6q_A 94 DNK-LQALPIGVFDQLVNLAELRLDR----------------------NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150 (270)
T ss_dssp SSC-CCCCCTTTTTTCSSCCEEECCS----------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCc-CCcCCHhHcccccCCCEEECCC----------------------CccCeeCHHHhCcCcCCCEEECCCCcCCccCH
Confidence 654 3333332 2 444444444444 44444433 35677788888888876554444
Q ss_pred ccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCc-cCCCCCCCcEEeccCCc
Q 009053 220 SSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPE-SLGQLSSLQILSLSDNS 284 (545)
Q Consensus 220 ~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~ 284 (545)
..+..+++|+.|++++|......+..+..+++|+.|++++|.++.+|. .+..+++|+.|+|++|+
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 446778888888888887666556678888899999999998887765 47788999999999983
No 80
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=1.7e-19 Score=196.36 Aligned_cols=312 Identities=14% Similarity=0.090 Sum_probs=225.5
Q ss_pred hCCCCCcEEEeeCCCCcc-----ccCCcCCCCCCCccEEEeCCCCCCcc--------cccccCccEEEcCCCCCcccccc
Q 009053 16 SKMTELRFLKFYGSENKC-----MVSSLEGVPFTEVRYFEWHQYPLKTL--------DIHAENLVSLKMPGSKVKQLWDD 82 (545)
Q Consensus 16 ~~m~~Lr~L~l~~~~~~~-----l~~~l~~l~~~~Lr~L~l~~~~l~~l--------~~~~~~L~~L~L~~~~l~~l~~~ 82 (545)
.++++|+.|++++|.... ++..+..++ +|+.|+++++.+..+ ...+++|++|++.++.+..++..
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~--~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~ 238 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNT--SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF 238 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCC--CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCC--CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH
Confidence 589999999998863211 233345566 999999999988732 34679999999999999999988
Q ss_pred ccCCCCccEEEecCCCCCCC----CCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCc-cC-Ccc-C
Q 009053 83 VQNLVNLKKIDLWYSKLLTK----LPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRT-LP-TSI-Q 155 (545)
Q Consensus 83 ~~~l~~L~~LdLs~~~~~~~----~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~-lp-~~~-~ 155 (545)
+..+++|+.|++++...... ...+..+++|+.|.+.++ ....++..+..+++|++|++++|. +.. .. ..+ .
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~ 316 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQK 316 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTT
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHh
Confidence 99999999999986433211 124778899999999885 456678888899999999999997 432 21 223 7
Q ss_pred CccccEEeecCCCCCCCCCcccc--CCccEEEccc-----------ccCcc--cCccccCCCCCCEEEecCCCCCccccc
Q 009053 156 SKYLKRLVLRGCSNLKNFPEISS--SGIHRLDLTH-----------VGIKE--LPSSIDRLSKLDTLKIHDCTSLESLPS 220 (545)
Q Consensus 156 l~~L~~L~L~~c~~l~~~p~~~~--~~L~~L~l~~-----------~~i~~--lp~~~~~l~~L~~L~L~~~~~l~~lp~ 220 (545)
+++|+.|+++++..-..++.+.. ..|++|++.+ +.++. ++.....+++|++|++..+......+.
T Consensus 317 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~ 396 (592)
T 3ogk_B 317 CPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE 396 (592)
T ss_dssp CTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHH
T ss_pred CcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHH
Confidence 89999999985422222222211 1299999993 55553 444456799999999977666665555
Q ss_pred cccC-CCCCcEEEEeC---CCCCCc------cccccCCCCCCcEEEecCcc--Cc-CCCccC-CCCCCCcEEeccCCcCC
Q 009053 221 SLSM-FKSLTSLEIIY---CPKLKR------LPDELGNLKALEELRVEGTA--IR-RPPESL-GQLSSLQILSLSDNSNL 286 (545)
Q Consensus 221 ~l~~-l~~L~~L~Ls~---c~~~~~------lp~~l~~l~~L~~L~L~~n~--l~-~lp~~l-~~l~~L~~L~L~~n~~~ 286 (545)
.+.. +++|+.|++++ |+..+. ++..+.++++|+.|+++.|. ++ ..+..+ ..+++|+.|+|++| .+
T Consensus 397 ~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l 475 (592)
T 3ogk_B 397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GE 475 (592)
T ss_dssp HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CS
T ss_pred HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CC
Confidence 5655 89999999984 444444 33346679999999997643 44 222222 34789999999999 56
Q ss_pred C--cchhhhcCCCCCCEEeccCCcCccc-cCC---CCCCccEEeccCCCCCCc
Q 009053 287 E--RAPESIRHLSKLTSLFISDCKMLQT-LPE---LPCNLHDLDASGCTSLEA 333 (545)
Q Consensus 287 ~--~lp~~l~~l~~L~~L~L~~c~~l~~-ip~---~~~sL~~L~l~~c~~L~~ 333 (545)
+ .++..+..+++|++|+|++|..... ++. ..++|+.|++++|. ++.
T Consensus 476 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 476 SDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp SHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred CHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 5 4667778999999999999984322 332 35799999999997 443
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.75 E-value=6.2e-18 Score=168.99 Aligned_cols=200 Identities=20% Similarity=0.196 Sum_probs=108.8
Q ss_pred CCccEEEecCCCCCCCCCC-C--CCCCCccEEEeeCCCCCcccc----ccccCCCCCCEEEecCCCCCCccCCcc-CCcc
Q 009053 87 VNLKKIDLWYSKLLTKLPD-L--SLAQNLEILDLGGCSSLTETH----SSIQYLNKLEVLDLDRCESLRTLPTSI-QSKY 158 (545)
Q Consensus 87 ~~L~~LdLs~~~~~~~~p~-l--~~l~~L~~L~L~~c~~l~~~~----~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~ 158 (545)
++|+.|++++|.+....|. + ..+++|++|++++|......+ ..+..+++|++|++++|......+..+ .+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 4456666665555544443 2 555566666666554433222 223345666666666654433333333 5555
Q ss_pred ccEEeecCCCCCCCCCccccCCccEEEcccccCccc--CccccCCCCCCEEEecCCCCCccccc----cccCCCCCcEEE
Q 009053 159 LKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKEL--PSSIDRLSKLDTLKIHDCTSLESLPS----SLSMFKSLTSLE 232 (545)
Q Consensus 159 L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~l--p~~~~~l~~L~~L~L~~~~~l~~lp~----~l~~l~~L~~L~ 232 (545)
|+.|++++|...+. ..+ +..++.+++|++|++++|... .++. .+..+++|++|+
T Consensus 171 L~~L~Ls~N~l~~~-------------------~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~ 230 (310)
T 4glp_A 171 LTSLDLSDNPGLGE-------------------RGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLD 230 (310)
T ss_dssp CCEEECCSCTTCHH-------------------HHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEE
T ss_pred CCEEECCCCCCccc-------------------hhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEE
Confidence 55555555432211 001 111234455555555554432 1221 124455666666
Q ss_pred EeCCCCCCccccccCCC---CCCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcC
Q 009053 233 IIYCPKLKRLPDELGNL---KALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKM 309 (545)
Q Consensus 233 Ls~c~~~~~lp~~l~~l---~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~ 309 (545)
+++|...+..|..++.+ ++|++|++++|.++.+|..+. ++|+.|+|++| .++.+|. +..+++|+.|++++|+.
T Consensus 231 Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 231 LSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred CCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCCC
Confidence 66665555555555554 577777777777777776654 67778888777 6666654 56777788888877764
Q ss_pred c
Q 009053 310 L 310 (545)
Q Consensus 310 l 310 (545)
.
T Consensus 307 ~ 307 (310)
T 4glp_A 307 L 307 (310)
T ss_dssp S
T ss_pred C
Confidence 3
No 82
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=1.6e-19 Score=196.61 Aligned_cols=132 Identities=15% Similarity=0.056 Sum_probs=70.8
Q ss_pred CCCCcEEEEeCCCCCCccccccC-CCCCCcEEEec--C----ccCcCCCc------cCCCCCCCcEEeccCCcCCCcchh
Q 009053 225 FKSLTSLEIIYCPKLKRLPDELG-NLKALEELRVE--G----TAIRRPPE------SLGQLSSLQILSLSDNSNLERAPE 291 (545)
Q Consensus 225 l~~L~~L~Ls~c~~~~~lp~~l~-~l~~L~~L~L~--~----n~l~~lp~------~l~~l~~L~~L~L~~n~~~~~lp~ 291 (545)
+++|+.|.+..+......+..+. .+++|+.|+++ + +.++..|. .+..+++|+.|+|+++ .....+.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~-l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSS-CCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCc-ccHHHHH
Confidence 45555554444433333233332 46677777777 3 34443321 2445677777777653 2223333
Q ss_pred hhcC-CCCCCEEeccCCcCccccC----CCCCCccEEeccCCCCCCccCCc-cc--CCcccEEEEcCCCCCChhhH
Q 009053 292 SIRH-LSKLTSLFISDCKMLQTLP----ELPCNLHDLDASGCTSLEALPAS-LS--SKFYLSVDLSNCLKLDLSEL 359 (545)
Q Consensus 292 ~l~~-l~~L~~L~L~~c~~l~~ip----~~~~sL~~L~l~~c~~L~~l~~~-~~--~~~~~~l~l~~C~~L~~~~l 359 (545)
.+.. +++|+.|+|++|......+ ...++|+.|++++|+. +..... .. ...++.|++++|+. ..+.+
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~ 523 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV-SFGAC 523 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC-BHHHH
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC-CHHHH
Confidence 3443 7778888888776433211 2357888888888875 321110 11 12345888888865 44444
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=1.7e-17 Score=165.60 Aligned_cols=197 Identities=22% Similarity=0.293 Sum_probs=121.9
Q ss_pred ccccCccEEEcCCCCCccccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEE
Q 009053 61 IHAENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLD 140 (545)
Q Consensus 61 ~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~ 140 (545)
..+++|++|++.++.++.++ ++..+++|+.|+|++|.+....+ +..+++|+.|++++|. +..++ .+..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEE
Confidence 34556666666666666654 45666666666666665543322 6666666666666654 33332 455666666666
Q ss_pred ecCCCCCCccCCccCCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccc
Q 009053 141 LDRCESLRTLPTSIQSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPS 220 (545)
Q Consensus 141 L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~ 220 (545)
+++|. +..++....+++| +.|++++|.+..++. +..+++|+.|++++|.... ++.
T Consensus 114 l~~n~-l~~~~~l~~l~~L----------------------~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~ 168 (308)
T 1h6u_A 114 LTSTQ-ITDVTPLAGLSNL----------------------QVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP 168 (308)
T ss_dssp CTTSC-CCCCGGGTTCTTC----------------------CEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG
T ss_pred CCCCC-CCCchhhcCCCCC----------------------CEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh
Confidence 66653 3333332244444 444444444555544 6667777777777765443 433
Q ss_pred cccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchh
Q 009053 221 SLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPE 291 (545)
Q Consensus 221 ~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~ 291 (545)
+..+++|+.|++++|...+. +. +..+++|+.|++++|.++.++. +..+++|+.|++++| .++..|.
T Consensus 169 -l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEE-EEECCCE
T ss_pred -hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCC-eeecCCe
Confidence 67777888888877765443 32 6778888888888888887763 778888888888888 5555553
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=8.3e-17 Score=157.43 Aligned_cols=194 Identities=27% Similarity=0.403 Sum_probs=120.0
Q ss_pred CccEEEecCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCcc--CCccccEEee
Q 009053 88 NLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI--QSKYLKRLVL 164 (545)
Q Consensus 88 ~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L 164 (545)
+++.++++++.+.. +|. +. ++|++|++++|......+..+..+++|++|++++|. ++.+|... .+++|+.|++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEEC
Confidence 56788888776553 443 32 578888888775444334467777777777777764 33444332 3444444444
Q ss_pred cCCCCCCCCCccccCCccEEEcccccCcccCc-cccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccc
Q 009053 165 RGCSNLKNFPEISSSGIHRLDLTHVGIKELPS-SIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLP 243 (545)
Q Consensus 165 ~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp 243 (545)
++ |.+.++|. .+..+++|+.|++++|......+..+..+++|++|++++|...+..+
T Consensus 93 ~~----------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 150 (270)
T 2o6q_A 93 TD----------------------NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150 (270)
T ss_dssp CS----------------------SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CC----------------------CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH
Confidence 43 44444443 34667777777777776655555556677777777777766554444
Q ss_pred cccCCCCCCcEEEecCccCcCCCc-cCCCCCCCcEEeccCCcCCCcchh-hhcCCCCCCEEeccCCc
Q 009053 244 DELGNLKALEELRVEGTAIRRPPE-SLGQLSSLQILSLSDNSNLERAPE-SIRHLSKLTSLFISDCK 308 (545)
Q Consensus 244 ~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~~~~~lp~-~l~~l~~L~~L~L~~c~ 308 (545)
..++.+++|+.|++++|.++.++. .+..+++|+.|+|++| .++.+|. .+..+++|+.|++++|+
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 456667777777777777766654 3566677777777777 5555543 35566666666666654
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.75 E-value=3e-18 Score=171.27 Aligned_cols=213 Identities=17% Similarity=0.185 Sum_probs=113.7
Q ss_pred CccEEEeCCCCCCcc-------cccccCccEEEcCCCCCc-cccccc--cCCCCccEEEecCCCCCCCCCC-----CCCC
Q 009053 45 EVRYFEWHQYPLKTL-------DIHAENLVSLKMPGSKVK-QLWDDV--QNLVNLKKIDLWYSKLLTKLPD-----LSLA 109 (545)
Q Consensus 45 ~Lr~L~l~~~~l~~l-------~~~~~~L~~L~L~~~~l~-~l~~~~--~~l~~L~~LdLs~~~~~~~~p~-----l~~l 109 (545)
.++.|.+.++.+..- .....+|++|++++|.+. ..+..+ ..+++|+.|+|++|.+....+. +..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 355555555554322 223345666666666665 333444 5666666666666665544332 2346
Q ss_pred CCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCc--cC--Ccc-CCccccEEeecCCCCCCCCCccccCCccEE
Q 009053 110 QNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRT--LP--TSI-QSKYLKRLVLRGCSNLKNFPEISSSGIHRL 184 (545)
Q Consensus 110 ~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~--lp--~~~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L 184 (545)
++|++|++++|......+..++.+++|++|++++|...+. ++ ... .+++|+.|++++|
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N----------------- 207 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT----------------- 207 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-----------------
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-----------------
Confidence 6666666666655444445566666666666666543321 11 111 3344444444443
Q ss_pred EcccccCcccCc----cccCCCCCCEEEecCCCCCccccccccCC---CCCcEEEEeCCCCCCccccccCCCCCCcEEEe
Q 009053 185 DLTHVGIKELPS----SIDRLSKLDTLKIHDCTSLESLPSSLSMF---KSLTSLEIIYCPKLKRLPDELGNLKALEELRV 257 (545)
Q Consensus 185 ~l~~~~i~~lp~----~~~~l~~L~~L~L~~~~~l~~lp~~l~~l---~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L 257 (545)
.++.++. .++.+++|++|++++|...+..|..+..+ ++|++|++++|... .+|..+. ++|+.|++
T Consensus 208 -----~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 208 -----GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDL 279 (310)
T ss_dssp -----CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEEC
T ss_pred -----CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEEC
Confidence 2222222 13455666666666666555555555444 46666666665544 4555443 56666666
Q ss_pred cCccCcCCCccCCCCCCCcEEeccCC
Q 009053 258 EGTAIRRPPESLGQLSSLQILSLSDN 283 (545)
Q Consensus 258 ~~n~l~~lp~~l~~l~~L~~L~L~~n 283 (545)
++|.++.+|. +..+++|+.|+|++|
T Consensus 280 s~N~l~~~~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 280 SSNRLNRAPQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp CSCCCCSCCC-TTSCCCCSCEECSST
T ss_pred CCCcCCCCch-hhhCCCccEEECcCC
Confidence 6666665544 455666666666666
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=1.9e-17 Score=165.32 Aligned_cols=209 Identities=20% Similarity=0.271 Sum_probs=148.0
Q ss_pred ccEEEcCCCCCccccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCC
Q 009053 66 LVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCE 145 (545)
Q Consensus 66 L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~ 145 (545)
++.+.+..+.+..+. ....+++|+.|++++|.+. .++.+..+++|+.|++++|. +..++. +..+++|++|++++|.
T Consensus 21 ~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~-~l~~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 21 AIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP 96 (308)
T ss_dssp HHHHHTTCSSTTSEE-CHHHHHTCCEEECTTSCCC-CCTTGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC
T ss_pred HHHHHhCCCCcCcee-cHHHcCCcCEEEeeCCCcc-CchhhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc
Confidence 334445555555431 2456788999999988654 35678888889999998874 445555 7888888888888875
Q ss_pred CCCccCCccCCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCC
Q 009053 146 SLRTLPTSIQSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMF 225 (545)
Q Consensus 146 ~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l 225 (545)
+..++....+++|+.| ++++|.+++++. +..+++|+.|++++|.... ++. +..+
T Consensus 97 -l~~~~~~~~l~~L~~L----------------------~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l 150 (308)
T 1h6u_A 97 -LKNVSAIAGLQSIKTL----------------------DLTSTQITDVTP-LAGLSNLQVLYLDLNQITN-ISP-LAGL 150 (308)
T ss_dssp -CSCCGGGTTCTTCCEE----------------------ECTTSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGC
T ss_pred -CCCchhhcCCCCCCEE----------------------ECCCCCCCCchh-hcCCCCCCEEECCCCccCc-Ccc-ccCC
Confidence 4444432244444444 444455555554 7788899999999886544 333 7788
Q ss_pred CCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEecc
Q 009053 226 KSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFIS 305 (545)
Q Consensus 226 ~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~ 305 (545)
++|+.|++++|.... ++. +..+++|+.|++++|.++.++. +..+++|+.|++++| .+..++. +..+++|+.|+++
T Consensus 151 ~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 151 TNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLT 225 (308)
T ss_dssp TTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEE
T ss_pred CCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEcc
Confidence 888888888886554 333 7888888888888888887765 777888888888888 6776663 7788888888888
Q ss_pred CCcC
Q 009053 306 DCKM 309 (545)
Q Consensus 306 ~c~~ 309 (545)
+|+.
T Consensus 226 ~N~i 229 (308)
T 1h6u_A 226 NQTI 229 (308)
T ss_dssp EEEE
T ss_pred CCee
Confidence 8764
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=1.4e-17 Score=163.16 Aligned_cols=198 Identities=19% Similarity=0.179 Sum_probs=106.7
Q ss_pred CccEEEeCCCCCCcc--cccccCccEEEcCCCCCccccccccCCCCccEEEecCCCCCCCCCC-CCCCCCccEEEeeCCC
Q 009053 45 EVRYFEWHQYPLKTL--DIHAENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGGCS 121 (545)
Q Consensus 45 ~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~ 121 (545)
+|+.|.+.++.++.+ ...+++|++|++++|.++.++ .+..+++|++|+|++|.+....+. ++.+++|++|++++|.
T Consensus 42 ~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 120 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120 (272)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc
Confidence 555555555555544 344455555555555555542 455555555565555554433332 4555555555555554
Q ss_pred CCccccccccCCCCCCEEEecCCCCCCccCCc-c-CCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCcc-c
Q 009053 122 SLTETHSSIQYLNKLEVLDLDRCESLRTLPTS-I-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSS-I 198 (545)
Q Consensus 122 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~-~ 198 (545)
.....+..++.+++|++|++++|. ++.++.. + .+++| +.|++++|.+++++.. +
T Consensus 121 l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L----------------------~~L~l~~n~l~~~~~~~~ 177 (272)
T 3rfs_A 121 LQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNL----------------------TELDLSYNQLQSLPEGVF 177 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC----------------------CEEECCSSCCCCCCTTTT
T ss_pred CCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccC----------------------CEEECCCCCcCccCHHHh
Confidence 333333334555555555555553 2233322 1 34444 4444444444444433 4
Q ss_pred cCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCc-CCCccCCCCC
Q 009053 199 DRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIR-RPPESLGQLS 273 (545)
Q Consensus 199 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~ 273 (545)
..+++|+.|++++|...+..+..+..+++|+.|++++|...+ .+++|+.+++..|.++ .+|..++.++
T Consensus 178 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 566777777777766555555556667777777777765433 3446677777766665 5566555443
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=9.7e-17 Score=158.70 Aligned_cols=196 Identities=21% Similarity=0.229 Sum_probs=117.0
Q ss_pred hhCCCCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCccccccccCCCCcc
Q 009053 15 FSKMTELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLWDDVQNLVNLK 90 (545)
Q Consensus 15 f~~m~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~ 90 (545)
++++++|+.++++++....+|.++ + .+++.|+++++.+..+ ...+++|++|++++|.++.++.. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~---~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL---P-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC---C-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCC---C-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 566777777777666555566443 2 3666777776666655 34456666666666666665543 5666666
Q ss_pred EEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCcc--CCccccEEeecCCC
Q 009053 91 KIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI--QSKYLKRLVLRGCS 168 (545)
Q Consensus 91 ~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~ 168 (545)
.|+|++|.+......+..+++|+.|++++|......+..+..+++|++|++++|. +..+|... .+++
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~---------- 149 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPK---------- 149 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTT----------
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccC----------
Confidence 6666666554322235556666666666654433333455566666666666653 33333321 3344
Q ss_pred CCCCCCccccCCccEEEcccccCcccCcc-ccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCC
Q 009053 169 NLKNFPEISSSGIHRLDLTHVGIKELPSS-IDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKL 239 (545)
Q Consensus 169 ~l~~~p~~~~~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~ 239 (545)
|+.|++++|.++++|.. +..+++|+.|++++|.. ..+|..+..+++|+.|++++|...
T Consensus 150 ------------L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l-~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 150 ------------LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ------------CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCCCSEEECCSCCBC
T ss_pred ------------CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC-CccChhhcccccCCeEEeCCCCcc
Confidence 55555555666666654 35677788888877654 367777777777888888777653
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=3.1e-19 Score=184.05 Aligned_cols=130 Identities=16% Similarity=0.154 Sum_probs=82.5
Q ss_pred ccEEEcccccCc--ccC---ccccCCCCCCEEEecCCCCCc-----cccccccCCCCCcEEEEeCCCCC----Ccccccc
Q 009053 181 IHRLDLTHVGIK--ELP---SSIDRLSKLDTLKIHDCTSLE-----SLPSSLSMFKSLTSLEIIYCPKL----KRLPDEL 246 (545)
Q Consensus 181 L~~L~l~~~~i~--~lp---~~~~~l~~L~~L~L~~~~~l~-----~lp~~l~~l~~L~~L~Ls~c~~~----~~lp~~l 246 (545)
|+.|++++|.+. .++ ..+..+++|+.|++++|.... .+|..+..+++|+.|++++|... ..+|..+
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 555555555553 233 345567777777777775542 23335667777777777777654 4566667
Q ss_pred CCCCCCcEEEecCccCcC-----CCccC--CCCCCCcEEeccCCcCCCc-----chhhh-cCCCCCCEEeccCCcCcc
Q 009053 247 GNLKALEELRVEGTAIRR-----PPESL--GQLSSLQILSLSDNSNLER-----APESI-RHLSKLTSLFISDCKMLQ 311 (545)
Q Consensus 247 ~~l~~L~~L~L~~n~l~~-----lp~~l--~~l~~L~~L~L~~n~~~~~-----lp~~l-~~l~~L~~L~L~~c~~l~ 311 (545)
..+++|+.|++++|.++. ++..+ +.+++|+.|+|++| .++. +|..+ .++++|+.|++++|+...
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 777777777777777663 24444 33677777777777 5554 66666 456777777777776543
No 90
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=6.2e-20 Score=199.90 Aligned_cols=310 Identities=17% Similarity=0.176 Sum_probs=194.7
Q ss_pred hhhhCCCCCcEEEeeCCCCc-cccCCcC-CCCCCCccEEEeCCC-CCCc--c---cccccCccEEEcCCCCCcc-----c
Q 009053 13 YTFSKMTELRFLKFYGSENK-CMVSSLE-GVPFTEVRYFEWHQY-PLKT--L---DIHAENLVSLKMPGSKVKQ-----L 79 (545)
Q Consensus 13 ~~f~~m~~Lr~L~l~~~~~~-~l~~~l~-~l~~~~Lr~L~l~~~-~l~~--l---~~~~~~L~~L~L~~~~l~~-----l 79 (545)
..+..+++|+.|+++++... ..+..+. .++ +|+.|++.+| .+.. + ...+++|++|++++|.+.. +
T Consensus 99 ~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~--~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 99 AMSSSYTWLEEIRLKRMVVTDDCLELIAKSFK--NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp HHHHHCTTCCEEEEESCBCCHHHHHHHHHHCT--TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred HHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCC--CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence 44578999999999886432 2223332 465 9999999988 4443 2 3478899999999988653 3
Q ss_pred cccccCCCCccEEEecCCCCCCCCC-----C-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCC---------
Q 009053 80 WDDVQNLVNLKKIDLWYSKLLTKLP-----D-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRC--------- 144 (545)
Q Consensus 80 ~~~~~~l~~L~~LdLs~~~~~~~~p-----~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c--------- 144 (545)
+.....+++|+.|++++|. ..+. . +..+++|+.|++.+|..+..++..+..+++|+.|++..|
T Consensus 177 ~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp GGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred HHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhH
Confidence 3444578899999999886 2222 1 235689999999988666666666667777777765433
Q ss_pred ----------CCCCc-----------cCCcc-CCccccEEeecCCCCCCC--CCccccC--CccEEEcccccCc--ccCc
Q 009053 145 ----------ESLRT-----------LPTSI-QSKYLKRLVLRGCSNLKN--FPEISSS--GIHRLDLTHVGIK--ELPS 196 (545)
Q Consensus 145 ----------~~l~~-----------lp~~~-~l~~L~~L~L~~c~~l~~--~p~~~~~--~L~~L~l~~~~i~--~lp~ 196 (545)
..+.. ++... .+++|+.|++++|. +.. +...... .|+.|++.++ +. .++.
T Consensus 255 ~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~ 332 (594)
T 2p1m_B 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEV 332 (594)
T ss_dssp HHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHH
T ss_pred HHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHH
Confidence 22221 12211 45677777777766 332 1111111 1666666655 22 1222
Q ss_pred cccC----------------------------------CCCCCEEEecCCCCCcccccccc-CCCCCcEEEEe-----CC
Q 009053 197 SIDR----------------------------------LSKLDTLKIHDCTSLESLPSSLS-MFKSLTSLEII-----YC 236 (545)
Q Consensus 197 ~~~~----------------------------------l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~Ls-----~c 236 (545)
.... +++|+.|.+..+......+..+. .+++|+.|+++ +|
T Consensus 333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 412 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP 412 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC
T ss_pred HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc
Confidence 2223 44455554433333322222332 58999999999 55
Q ss_pred CCCCccc------cccCCCCCCcEEEecCccCc-CCCccCCC-CCCCcEEeccCCcCCC-cchhh-hcCCCCCCEEeccC
Q 009053 237 PKLKRLP------DELGNLKALEELRVEGTAIR-RPPESLGQ-LSSLQILSLSDNSNLE-RAPES-IRHLSKLTSLFISD 306 (545)
Q Consensus 237 ~~~~~lp------~~l~~l~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~~~~-~lp~~-l~~l~~L~~L~L~~ 306 (545)
...+..| ..+..+++|+.|++++ .++ ..+..+.. +++|+.|+|++| .++ ..+.. ...+++|+.|+|++
T Consensus 413 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~ 490 (594)
T 2p1m_B 413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRD 490 (594)
T ss_dssp CTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEES
T ss_pred ccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcC
Confidence 6655333 3367789999999987 444 22333333 789999999999 454 33333 37799999999999
Q ss_pred CcCccc----cCCCCCCccEEeccCCCC
Q 009053 307 CKMLQT----LPELPCNLHDLDASGCTS 330 (545)
Q Consensus 307 c~~l~~----ip~~~~sL~~L~l~~c~~ 330 (545)
|..... +....++|+.|++++|+.
T Consensus 491 n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 491 CPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 987332 223357999999999976
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=3.9e-19 Score=183.33 Aligned_cols=225 Identities=16% Similarity=0.195 Sum_probs=142.4
Q ss_pred cccCccEEEcCCCCCcc-----ccccccCCCCccEEEecCCCCC---CCCCC--------CCCCCCccEEEeeCCCCCc-
Q 009053 62 HAENLVSLKMPGSKVKQ-----LWDDVQNLVNLKKIDLWYSKLL---TKLPD--------LSLAQNLEILDLGGCSSLT- 124 (545)
Q Consensus 62 ~~~~L~~L~L~~~~l~~-----l~~~~~~l~~L~~LdLs~~~~~---~~~p~--------l~~l~~L~~L~L~~c~~l~- 124 (545)
.+++|++|+|++|.+.. ++..+..+++|+.|+|++|... ..+|. +..+++|++|+|++|....
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 34455555555555542 2333555666666666654322 11221 2455666666666654433
Q ss_pred ---cccccccCCCCCCEEEecCCCCCCc----cCCcc-CC---------ccccEEeecCCCCC-CCCCcc---c--cCCc
Q 009053 125 ---ETHSSIQYLNKLEVLDLDRCESLRT----LPTSI-QS---------KYLKRLVLRGCSNL-KNFPEI---S--SSGI 181 (545)
Q Consensus 125 ---~~~~~i~~l~~L~~L~L~~c~~l~~----lp~~~-~l---------~~L~~L~L~~c~~l-~~~p~~---~--~~~L 181 (545)
.++..+..+++|++|+|++|..... ++..+ .+ ++|+.|++++|... ..++.+ . ...|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 2455556666666666666543211 11111 22 56666666665432 122211 0 0127
Q ss_pred cEEEcccccCc--c----cCccccCCCCCCEEEecCCCCC----ccccccccCCCCCcEEEEeCCCCCCc----ccccc-
Q 009053 182 HRLDLTHVGIK--E----LPSSIDRLSKLDTLKIHDCTSL----ESLPSSLSMFKSLTSLEIIYCPKLKR----LPDEL- 246 (545)
Q Consensus 182 ~~L~l~~~~i~--~----lp~~~~~l~~L~~L~L~~~~~l----~~lp~~l~~l~~L~~L~Ls~c~~~~~----lp~~l- 246 (545)
+.|++++|.+. + +|..+..+++|+.|+|++|... ..+|..+..+++|+.|++++|..... ++..+
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 77777777776 2 3347888999999999998864 66788888999999999999987654 56666
Q ss_pred -CCCCCCcEEEecCccCcC-----CCccC-CCCCCCcEEeccCCcCCC
Q 009053 247 -GNLKALEELRVEGTAIRR-----PPESL-GQLSSLQILSLSDNSNLE 287 (545)
Q Consensus 247 -~~l~~L~~L~L~~n~l~~-----lp~~l-~~l~~L~~L~L~~n~~~~ 287 (545)
+.+++|+.|++++|.++. +|..+ .++++|+.|++++| .++
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~ 316 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFS 316 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSC
T ss_pred hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC-cCC
Confidence 459999999999999986 77777 56899999999999 444
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=7.4e-16 Score=156.62 Aligned_cols=221 Identities=24% Similarity=0.254 Sum_probs=107.1
Q ss_pred cEEEcCCCCCccccccccCCCCccEEEecCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccc-cccCCCCCCEEEecCC
Q 009053 67 VSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHS-SIQYLNKLEVLDLDRC 144 (545)
Q Consensus 67 ~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~-~i~~l~~L~~L~L~~c 144 (545)
++++.++++++++|..+ .++++.|+|++|++....++ |+++++|++|+|++|...+.++. .+.++++|+++.+.++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 45666677777777655 35677777777765543332 66677777777777665555543 3455666555444433
Q ss_pred CCCCccCCc-c-CCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCc-cccCCCCCCEEEecCCCCCcccccc
Q 009053 145 ESLRTLPTS-I-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPS-SIDRLSKLDTLKIHDCTSLESLPSS 221 (545)
Q Consensus 145 ~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~ 221 (545)
..+..++.. + .+++|+.|++++ |.+..+|. .+....++..|++.++..+..++..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~----------------------n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~ 147 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISN----------------------TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEE----------------------ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT
T ss_pred CcccccCchhhhhccccccccccc----------------------cccccCCchhhcccchhhhhhhcccccccccccc
Confidence 444444322 1 334433333333 22332222 1222334444555444444443321
Q ss_pred ccCCCCCcEEEEeCCCCCCccccccCCC-CCCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchh-hhcCCCCC
Q 009053 222 LSMFKSLTSLEIIYCPKLKRLPDELGNL-KALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPE-SIRHLSKL 299 (545)
Q Consensus 222 l~~l~~L~~L~Ls~c~~~~~lp~~l~~l-~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~-~l~~l~~L 299 (545)
.+..+ ..++.|++++|.++.++.......+|+.|++.++..++.+|. .+..+++|
T Consensus 148 -----------------------~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L 204 (350)
T 4ay9_X 148 -----------------------SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 204 (350)
T ss_dssp -----------------------SSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECC
T ss_pred -----------------------chhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCccc
Confidence 22222 234445555555554444444444455555544334444443 23445555
Q ss_pred CEEeccCCcCccccCC-CCCCccEEeccCCCCCCccC
Q 009053 300 TSLFISDCKMLQTLPE-LPCNLHDLDASGCTSLEALP 335 (545)
Q Consensus 300 ~~L~L~~c~~l~~ip~-~~~sL~~L~l~~c~~L~~l~ 335 (545)
+.|++++|+ ++.+|. .+.+|+.|.+.+|..++.+|
T Consensus 205 ~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 205 VILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp SEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCC
T ss_pred chhhcCCCC-cCccChhhhccchHhhhccCCCcCcCC
Confidence 555555443 334432 33445555555555555544
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=1.3e-15 Score=147.13 Aligned_cols=174 Identities=19% Similarity=0.223 Sum_probs=99.4
Q ss_pred cCccEEEcCCCCCccccccccCCCCccEEEecCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEec
Q 009053 64 ENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLD 142 (545)
Q Consensus 64 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~ 142 (545)
.+.++++++++.++.+|.++. ++|+.|+|++|.+....+. ++.+++|++|++++|......+..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 456677777777777776654 5777777777776665553 6677777777777765544444455666666666666
Q ss_pred CCCCCCccCCccCCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccc
Q 009053 143 RCESLRTLPTSIQSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSL 222 (545)
Q Consensus 143 ~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l 222 (545)
+|.. ..+|.. .+..+++|+.|++++|......+..+
T Consensus 92 ~n~l-~~~~~~-------------------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~ 127 (251)
T 3m19_A 92 NNQL-ASLPLG-------------------------------------------VFDHLTQLDKLYLGGNQLKSLPSGVF 127 (251)
T ss_dssp TSCC-CCCCTT-------------------------------------------TTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCcc-cccChh-------------------------------------------HhcccCCCCEEEcCCCcCCCcChhHh
Confidence 6532 222211 12333344444444433322222223
Q ss_pred cCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCc-cCCCCCCCcEEeccCC
Q 009053 223 SMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPE-SLGQLSSLQILSLSDN 283 (545)
Q Consensus 223 ~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n 283 (545)
..+++|+.|++++|...+..+..++.+++|+.|++++|.++.++. .+..+++|+.|+|++|
T Consensus 128 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 128 DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred ccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 445555555555554443333455666666666666666665543 5566677777777777
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=3.6e-18 Score=174.59 Aligned_cols=239 Identities=15% Similarity=0.147 Sum_probs=121.1
Q ss_pred EEEeCCCCCCcc----cccccCccEEEcCCCCCcccc-----ccccCCC-CccEEEecCCCCCCCCCC-CCCC-----CC
Q 009053 48 YFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLW-----DDVQNLV-NLKKIDLWYSKLLTKLPD-LSLA-----QN 111 (545)
Q Consensus 48 ~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~-----~~~~~l~-~L~~LdLs~~~~~~~~p~-l~~l-----~~ 111 (545)
+++++.+.+... ...+.+|++|+|++|.+...+ ..+..++ +|+.|+|++|.+....+. +..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 345555655544 233445777777777766544 4556666 677777777655444331 2222 66
Q ss_pred ccEEEeeCCCCCcccccc----ccCC-CCCCEEEecCCCCCCccCC-cc-----C-CccccEEeecCCCCCCCCCccccC
Q 009053 112 LEILDLGGCSSLTETHSS----IQYL-NKLEVLDLDRCESLRTLPT-SI-----Q-SKYLKRLVLRGCSNLKNFPEISSS 179 (545)
Q Consensus 112 L~~L~L~~c~~l~~~~~~----i~~l-~~L~~L~L~~c~~l~~lp~-~~-----~-l~~L~~L~L~~c~~l~~~p~~~~~ 179 (545)
|++|+|++|......+.. +..+ ++|++|++++|.. +..+. .+ . .++|+.|++++
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~------------- 147 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRG------------- 147 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTT-------------
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccC-------------
Confidence 666666666543333322 2333 5666666666542 22221 11 1 13444444444
Q ss_pred CccEEEcccccCc-----ccCccccCCC-CCCEEEecCCCCCcccccc----ccCC-CCCcEEEEeCCCCCCc----ccc
Q 009053 180 GIHRLDLTHVGIK-----ELPSSIDRLS-KLDTLKIHDCTSLESLPSS----LSMF-KSLTSLEIIYCPKLKR----LPD 244 (545)
Q Consensus 180 ~L~~L~l~~~~i~-----~lp~~~~~l~-~L~~L~L~~~~~l~~lp~~----l~~l-~~L~~L~Ls~c~~~~~----lp~ 244 (545)
|.+. .++..+..++ +|+.|++++|......+.. +..+ ++|++|++++|..... ++.
T Consensus 148 ---------N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 148 ---------NDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp ---------SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ---------CcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 4333 2333444444 6666666666544433322 2333 3666666666554331 333
Q ss_pred ccCC-CCCCcEEEecCccCcCCC-----ccCCCCCCCcEEeccCCcC-------CCcchhhhcCCCCCCEEeccCCcC
Q 009053 245 ELGN-LKALEELRVEGTAIRRPP-----ESLGQLSSLQILSLSDNSN-------LERAPESIRHLSKLTSLFISDCKM 309 (545)
Q Consensus 245 ~l~~-l~~L~~L~L~~n~l~~lp-----~~l~~l~~L~~L~L~~n~~-------~~~lp~~l~~l~~L~~L~L~~c~~ 309 (545)
.+.. .++|++|++++|.++..+ ..+..+++|+.|+|++|.. +..++..+..+++|+.|++++|+.
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 3333 246666666666665432 2335556666666666620 112333455566666666666653
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=1.4e-15 Score=163.60 Aligned_cols=180 Identities=23% Similarity=0.319 Sum_probs=99.4
Q ss_pred CccEEEecCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccccEEeecC
Q 009053 88 NLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRG 166 (545)
Q Consensus 88 ~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~ 166 (545)
+|+.|+|++|.+.. +|. + .++|+.|+|++|. +..+| ..+++|++|++++|. ++.+|. +. .+|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~-~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LP-ASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CC-TTCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hh-cCCCEEECCC
Confidence 78888888887655 554 4 3778888888775 34666 456777777777764 344655 31 1555555555
Q ss_pred CCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCcccccc
Q 009053 167 CSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDEL 246 (545)
Q Consensus 167 c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l 246 (545)
|.++++|. .+++|+.|++++|...+ +|. .+++|+.|++++|...+ +|. +
T Consensus 130 ----------------------N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l 178 (571)
T 3cvr_A 130 ----------------------NQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L 178 (571)
T ss_dssp ----------------------SCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C
T ss_pred ----------------------CcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h
Confidence 44444444 34455555555544332 333 34455555555554333 444 3
Q ss_pred CCCCCCcEEEecCccCcCCCccCCCCCCC-------cEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccccC
Q 009053 247 GNLKALEELRVEGTAIRRPPESLGQLSSL-------QILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLP 314 (545)
Q Consensus 247 ~~l~~L~~L~L~~n~l~~lp~~l~~l~~L-------~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip 314 (545)
. ++|+.|++++|.++.+|. +.. +| +.|+|++| .++.+|..+..+++|+.|+|++|+..+.+|
T Consensus 179 ~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 179 P--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp C--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred h--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 3 555555555555555554 332 44 55666655 555555555555666666666555544443
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=6.2e-16 Score=166.27 Aligned_cols=192 Identities=19% Similarity=0.271 Sum_probs=99.1
Q ss_pred hhhCCC-----CCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcccccccCccEEEcCCCCCccccccccCCCC
Q 009053 14 TFSKMT-----ELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTLDIHAENLVSLKMPGSKVKQLWDDVQNLVN 88 (545)
Q Consensus 14 ~f~~m~-----~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l~~~~~~L~~L~L~~~~l~~l~~~~~~l~~ 88 (545)
+|.+++ +|+.|++++|....+|..+ .+ +|++|++++|.++.+...+++|++|++++|.++.+|. +.. +
T Consensus 49 ~~~~l~~C~~~~L~~L~Ls~n~L~~lp~~l--~~--~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~ip~-l~~--~ 121 (571)
T 3cvr_A 49 AVSLLKECLINQFSELQLNRLNLSSLPDNL--PP--QITVLEITQNALISLPELPASLEYLDACDNRLSTLPE-LPA--S 121 (571)
T ss_dssp HHHHHHHHHHTTCSEEECCSSCCSCCCSCC--CT--TCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-CCT--T
T ss_pred hhhhccccccCCccEEEeCCCCCCccCHhH--cC--CCCEEECcCCCCcccccccCCCCEEEccCCCCCCcch-hhc--C
Confidence 455554 6777777666555555543 13 5666666666655553334556666666666665555 333 5
Q ss_pred ccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCC
Q 009053 89 LKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCS 168 (545)
Q Consensus 89 L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~ 168 (545)
|+.|+|++|.+.. +|. .+++|+.|++++|.. ..+|. .+++|+.|++++|. ++.+|. +. ++|+.|
T Consensus 122 L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~-~~L~~L------ 185 (571)
T 3cvr_A 122 LKHLDVDNNQLTM-LPE--LPALLEYINADNNQL-TMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP-ESLEAL------ 185 (571)
T ss_dssp CCEEECCSSCCSC-CCC--CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSC-CSCCCC-CC-TTCCEE------
T ss_pred CCEEECCCCcCCC-CCC--cCccccEEeCCCCcc-CcCCC---cCCCcCEEECCCCC-CCCcch-hh-CCCCEE------
Confidence 6666666655444 444 455566666655532 23443 34555555555543 333444 32 444444
Q ss_pred CCCCCCccccCCccEEEcccccCcccCccccCCCCC-------CEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCc
Q 009053 169 NLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKL-------DTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKR 241 (545)
Q Consensus 169 ~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L-------~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~ 241 (545)
++++|.++.+|. +.. +| +.|+|++|... .+|..+..+++|+.|++++|...+.
T Consensus 186 ----------------~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 186 ----------------DVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp ----------------ECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred ----------------ECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 444444444444 322 34 55555554332 3555555555555555555555555
Q ss_pred cccccCC
Q 009053 242 LPDELGN 248 (545)
Q Consensus 242 lp~~l~~ 248 (545)
+|..+..
T Consensus 246 ~p~~l~~ 252 (571)
T 3cvr_A 246 IRESLSQ 252 (571)
T ss_dssp HHHHHHH
T ss_pred CHHHHHH
Confidence 5544433
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=2.8e-15 Score=144.93 Aligned_cols=169 Identities=20% Similarity=0.280 Sum_probs=117.8
Q ss_pred ccEEeecCCCCCCCCCccccCCccEEEcccccCcccCc-cccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCC
Q 009053 159 LKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPS-SIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCP 237 (545)
Q Consensus 159 L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~ 237 (545)
.+.+++++ ..++.+|......++.|++++|.+.+++. .+..+++|++|++++|...+..+..+..+++|+.|++++|.
T Consensus 16 ~~~l~~~~-~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 16 KKEVDCQG-KSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp GTEEECTT-CCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CeEEecCC-CCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 34444444 23444444333337777777777776654 57778888888888877766666667788888888888887
Q ss_pred CCCccccccCCCCCCcEEEecCccCcCCCcc-CCCCCCCcEEeccCCcCCCcchh-hhcCCCCCCEEeccCCcCccccCC
Q 009053 238 KLKRLPDELGNLKALEELRVEGTAIRRPPES-LGQLSSLQILSLSDNSNLERAPE-SIRHLSKLTSLFISDCKMLQTLPE 315 (545)
Q Consensus 238 ~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~~~~~lp~-~l~~l~~L~~L~L~~c~~l~~ip~ 315 (545)
..+..+..++.+++|++|++++|.++.+|.. +..+++|+.|+|++| .++.+|. .+..+++|+.|+|++|+.....+.
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 7766667778888888888888888877654 577888888888888 6666655 577888888888888765433332
Q ss_pred ---CCCCccEEeccCCC
Q 009053 316 ---LPCNLHDLDASGCT 329 (545)
Q Consensus 316 ---~~~sL~~L~l~~c~ 329 (545)
..++|+.|++++|+
T Consensus 174 ~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTCTTCCEEECCSCC
T ss_pred HHhCCCCCCEEEeeCCc
Confidence 23567777777653
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.64 E-value=2.5e-17 Score=168.33 Aligned_cols=241 Identities=15% Similarity=0.144 Sum_probs=157.9
Q ss_pred EEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc--------ccccc-CccEEEcCCCCCccc-cccccCC-----C
Q 009053 23 FLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL--------DIHAE-NLVSLKMPGSKVKQL-WDDVQNL-----V 87 (545)
Q Consensus 23 ~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l--------~~~~~-~L~~L~L~~~~l~~l-~~~~~~l-----~ 87 (545)
+++++.+........+...+ .+|++|++++|.+... ...++ +|++|+|++|.+... +..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIP-HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSC-TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCC-CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 35666654443333444445 4799999999998876 22455 899999999999854 3444433 9
Q ss_pred CccEEEecCCCCCCCCCC-----CCCC-CCccEEEeeCCCCCcccccc----ccC-CCCCCEEEecCCCCCC----ccCC
Q 009053 88 NLKKIDLWYSKLLTKLPD-----LSLA-QNLEILDLGGCSSLTETHSS----IQY-LNKLEVLDLDRCESLR----TLPT 152 (545)
Q Consensus 88 ~L~~LdLs~~~~~~~~p~-----l~~l-~~L~~L~L~~c~~l~~~~~~----i~~-l~~L~~L~L~~c~~l~----~lp~ 152 (545)
+|+.|+|++|.+....+. +..+ ++|++|++++|......+.. +.. .++|++|++++|.... .++.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 999999999987665543 4455 89999999999754433333 334 3699999999985442 2222
Q ss_pred cc-CCc-cccEEeecCCCCCCCCCccccCCccEEEcccccCcccC-----ccccCC-CCCCEEEecCCCCCc----cccc
Q 009053 153 SI-QSK-YLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELP-----SSIDRL-SKLDTLKIHDCTSLE----SLPS 220 (545)
Q Consensus 153 ~~-~l~-~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp-----~~~~~l-~~L~~L~L~~~~~l~----~lp~ 220 (545)
.+ ..+ +|+.|++++| .+.... ..+..+ ++|+.|+|++|.... .++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n----------------------~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGN----------------------NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp HHHTSCTTCCEEECTTS----------------------CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred HHhcCCccccEeeecCC----------------------CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 22 233 5666666655 333222 234444 477777777776543 2444
Q ss_pred cccC-CCCCcEEEEeCCCCCCccc----cccCCCCCCcEEEecCccCcCC--------CccCCCCCCCcEEeccCCcCCC
Q 009053 221 SLSM-FKSLTSLEIIYCPKLKRLP----DELGNLKALEELRVEGTAIRRP--------PESLGQLSSLQILSLSDNSNLE 287 (545)
Q Consensus 221 ~l~~-l~~L~~L~Ls~c~~~~~lp----~~l~~l~~L~~L~L~~n~l~~l--------p~~l~~l~~L~~L~L~~n~~~~ 287 (545)
.+.. .++|++|++++|......+ ..+..+++|+.|++++|.+..+ +..+..+++|+.|++++| .+.
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N-~l~ 297 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK-EIH 297 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC-BCC
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC-cCC
Confidence 4444 3478888888876655332 3456778888888888874433 446778888999999999 444
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=3.9e-15 Score=138.34 Aligned_cols=152 Identities=17% Similarity=0.207 Sum_probs=95.9
Q ss_pred cccccCccEEEcCCCCCccccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEE
Q 009053 60 DIHAENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVL 139 (545)
Q Consensus 60 ~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L 139 (545)
...+++|++|+++++.++.++ ++..+++|+.|++++|. ...++.++.+++|++|++++|......+..++.+++|++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 345567777777777777776 67778888888888773 3445567777888888888876665567777778888888
Q ss_pred EecCCCCCCccCCcc-CCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccc
Q 009053 140 DLDRCESLRTLPTSI-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESL 218 (545)
Q Consensus 140 ~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~l 218 (545)
++++|......|..+ .+++|+.|++++|..++.+| .+..+++|+.|++++|.... +
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~----------------------~l~~l~~L~~L~l~~n~i~~-~ 174 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM----------------------PLKTLPELKSLNIQFDGVHD-Y 174 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG----------------------GGGGCSSCCEEECTTBCCCC-C
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH----------------------hhcCCCCCCEEECCCCCCcC-h
Confidence 888775544444444 66666666666665444433 24445555555555544322 2
Q ss_pred cccccCCCCCcEEEEeCCC
Q 009053 219 PSSLSMFKSLTSLEIIYCP 237 (545)
Q Consensus 219 p~~l~~l~~L~~L~Ls~c~ 237 (545)
+ .+..+++|+.|++++|.
T Consensus 175 ~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 175 R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp T-TGGGCSSCCEEEECBC-
T ss_pred H-HhccCCCCCEEEeeCcc
Confidence 2 34455555555555544
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=1.4e-14 Score=143.32 Aligned_cols=87 Identities=22% Similarity=0.297 Sum_probs=53.8
Q ss_pred ccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCccCCCCCCCcE
Q 009053 198 IDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPESLGQLSSLQI 277 (545)
Q Consensus 198 ~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~ 277 (545)
+..+++|+.|++++|..... ..+..+++|+.|++++|...+..+ +..+++|+.|++++|.++.++. +..+++|+.
T Consensus 130 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~ 204 (291)
T 1h6t_A 130 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDV 204 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSE
T ss_pred hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-hccCCCCCE
Confidence 44455555555555543332 345566666666666665444333 6677777777777777777654 777888888
Q ss_pred EeccCCcCCCcch
Q 009053 278 LSLSDNSNLERAP 290 (545)
Q Consensus 278 L~L~~n~~~~~lp 290 (545)
|++++| .+...|
T Consensus 205 L~l~~n-~i~~~~ 216 (291)
T 1h6t_A 205 LELFSQ-ECLNKP 216 (291)
T ss_dssp EEEEEE-EEECCC
T ss_pred EECcCC-cccCCc
Confidence 888887 444333
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=1.3e-14 Score=143.42 Aligned_cols=171 Identities=22% Similarity=0.248 Sum_probs=112.8
Q ss_pred CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCCCCCCCccccCCccEEE
Q 009053 106 LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSNLKNFPEISSSGIHRLD 185 (545)
Q Consensus 106 l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~ 185 (545)
+..+++|+.|++++|. +..++ .+..+++|++|++++|. +..++....+++ |+.|+
T Consensus 42 ~~~l~~L~~L~l~~~~-i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~l~~l~~----------------------L~~L~ 96 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNK-LTDIKPLANLKN----------------------LGWLF 96 (291)
T ss_dssp HHHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCTT----------------------CCEEE
T ss_pred hhhcCcccEEEccCCC-cccCh-hHhcCCCCCEEEccCCc-cCCCcccccCCC----------------------CCEEE
Confidence 3345566666666553 23332 35555666666665543 222222113333 55555
Q ss_pred cccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCC
Q 009053 186 LTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRP 265 (545)
Q Consensus 186 l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~l 265 (545)
+++|.+..+|. +..+++|+.|++++|.... + ..+..+++|+.|++++|...+. ..++.+++|+.|++++|.++.+
T Consensus 97 l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 97 LDENKVKDLSS-LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp CCSSCCCCGGG-GTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCCCcCCCChh-hccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence 55555555544 7778888888888876544 3 3577788888888888766543 5677888888888888888877
Q ss_pred CccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcC
Q 009053 266 PESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKM 309 (545)
Q Consensus 266 p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~ 309 (545)
+. +..+++|+.|++++| .++.++. +..+++|+.|++++|+.
T Consensus 172 ~~-l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 172 VP-LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp GG-GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEEE
T ss_pred hh-hcCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCcc
Confidence 65 778888888888888 7777764 77888888888887764
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=2.2e-14 Score=134.26 Aligned_cols=153 Identities=21% Similarity=0.245 Sum_probs=102.5
Q ss_pred ccEEEcccccCcccCcc-ccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecC
Q 009053 181 IHRLDLTHVGIKELPSS-IDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEG 259 (545)
Q Consensus 181 L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~ 259 (545)
+++|+++++.+++++.. +..+++|++|++++|......+..+..+++|++|++++|...+..+..++.+++|++|++++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence 66666666666666553 56777777777777665544344456777777777777766655555567777888888887
Q ss_pred ccCcCCCcc-CCCCCCCcEEeccCCcCCCcchhh-hcCCCCCCEEeccCCcCccccCCCCCCccEEeccCCCCCCccCCc
Q 009053 260 TAIRRPPES-LGQLSSLQILSLSDNSNLERAPES-IRHLSKLTSLFISDCKMLQTLPELPCNLHDLDASGCTSLEALPAS 337 (545)
Q Consensus 260 n~l~~lp~~-l~~l~~L~~L~L~~n~~~~~lp~~-l~~l~~L~~L~L~~c~~l~~ip~~~~sL~~L~l~~c~~L~~l~~~ 337 (545)
|.++.++.. +..+++|+.|++++| .++.+|.. +..+++|+.|++++|+.... +++|++|+++.+..-+.+|..
T Consensus 110 N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 110 NQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCT----CPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCCC----TTTTHHHHHHHHHCTTTBBCT
T ss_pred CcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeecC----CCCHHHHHHHHHhCCceeecc
Confidence 777766543 567778888888877 56555543 66777888888877754433 345677777666555566654
Q ss_pred c
Q 009053 338 L 338 (545)
Q Consensus 338 ~ 338 (545)
.
T Consensus 185 ~ 185 (208)
T 2o6s_A 185 A 185 (208)
T ss_dssp T
T ss_pred C
Confidence 3
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=7e-15 Score=159.63 Aligned_cols=174 Identities=25% Similarity=0.282 Sum_probs=90.2
Q ss_pred ccccCccEEEcCCCCCccccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEE
Q 009053 61 IHAENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLD 140 (545)
Q Consensus 61 ~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~ 140 (545)
..+++|++|+++++.+..++ .+..+++|+.|+|++|.+... +.+..+++|+.|+|++|.. ..++ .+..+++|+.|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKI-KDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCC-CCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCC-hhhccCCCCCEEECcCCCC-CCCh-hhccCCCCCEEE
Confidence 34455555555555555554 355556666666665554432 2255555555555555532 2222 455555555555
Q ss_pred ecCCCCCCccCCccCCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccc
Q 009053 141 LDRCESLRTLPTSIQSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPS 220 (545)
Q Consensus 141 L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~ 220 (545)
|++|. +..++....+++|+.|+|++ |.+..+ ..+..+++|+.|+|++|...+..|
T Consensus 116 Ls~N~-l~~l~~l~~l~~L~~L~Ls~----------------------N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 116 LEHNG-ISDINGLVHLPQLESLYLGN----------------------NKITDI-TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp CTTSC-CCCCGGGGGCTTCSEEECCS----------------------SCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred ecCCC-CCCCccccCCCccCEEECCC----------------------CccCCc-hhhcccCCCCEEECcCCcCCCchh-
Confidence 55543 22233222344444444433 333333 345556666666666655444333
Q ss_pred cccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCC
Q 009053 221 SLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPP 266 (545)
Q Consensus 221 ~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp 266 (545)
+..+++|+.|+|++|...+ + ..+..+++|+.|++++|.+...|
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECCC
T ss_pred -hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCCc
Confidence 5566666666666665433 2 24566666666666666665443
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.58 E-value=3.3e-14 Score=134.56 Aligned_cols=148 Identities=17% Similarity=0.198 Sum_probs=113.0
Q ss_pred cEEeecCCCCCCCCCccccCCccEEEcccccCcccCc--cccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCC
Q 009053 160 KRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPS--SIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCP 237 (545)
Q Consensus 160 ~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~ 237 (545)
+.++++++ .++.+|......++.|++++|.++.++. .+..+++|+.|++++|...+..+..+..+++|++|++++|.
T Consensus 14 ~~l~~s~n-~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSS-CCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCC-CcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 34555552 3455555444447788888888888743 37788899999998887666556678888889999998888
Q ss_pred CCCccccccCCCCCCcEEEecCccCcCC-CccCCCCCCCcEEeccCCcCCCcc-hhhhcCCCCCCEEeccCCcC
Q 009053 238 KLKRLPDELGNLKALEELRVEGTAIRRP-PESLGQLSSLQILSLSDNSNLERA-PESIRHLSKLTSLFISDCKM 309 (545)
Q Consensus 238 ~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~l-p~~l~~l~~L~~L~L~~c~~ 309 (545)
..+..+..++.+++|++|++++|.++.+ |..+..+++|+.|+|++| .++.+ |..+..+++|+.|++++|+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCC
Confidence 8777777788888999999998888866 677888888999999888 56654 77788888888888888764
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=1.3e-14 Score=134.80 Aligned_cols=151 Identities=20% Similarity=0.247 Sum_probs=90.8
Q ss_pred cCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEec
Q 009053 131 QYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIH 210 (545)
Q Consensus 131 ~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~ 210 (545)
..+++|+.|++++|. +..+|....+++|+.|++++| .+.. + +.+..+++|++|+++
T Consensus 41 ~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~n-~~~~---------------------~-~~l~~l~~L~~L~l~ 96 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTDLTGIEYAHNIKDLTINNI-HATN---------------------Y-NPISGLSNLERLRIM 96 (197)
T ss_dssp HHHHTCCEEEEESSC-CSCCTTGGGCTTCSEEEEESC-CCSC---------------------C-GGGTTCTTCCEEEEE
T ss_pred hhcCCccEEeccCCC-ccChHHHhcCCCCCEEEccCC-CCCc---------------------c-hhhhcCCCCCEEEeE
Confidence 455667777777753 445553225666666666655 2222 2 234556666666666
Q ss_pred CCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCcc-CcCCCccCCCCCCCcEEeccCCcCCCcc
Q 009053 211 DCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTA-IRRPPESLGQLSSLQILSLSDNSNLERA 289 (545)
Q Consensus 211 ~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~~~~~l 289 (545)
+|......+..+..+++|+.|++++|...+..|..++.+++|++|++++|. ++.+| .+..+++|+.|++++| .++.+
T Consensus 97 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~ 174 (197)
T 4ezg_A 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDY 174 (197)
T ss_dssp CTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCC
T ss_pred CCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcCh
Confidence 666555555566666666666666666655556666666666666666665 55554 4666666666666666 55555
Q ss_pred hhhhcCCCCCCEEeccCCc
Q 009053 290 PESIRHLSKLTSLFISDCK 308 (545)
Q Consensus 290 p~~l~~l~~L~~L~L~~c~ 308 (545)
+ .+..+++|+.|++++|+
T Consensus 175 ~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 175 R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp T-TGGGCSSCCEEEECBC-
T ss_pred H-HhccCCCCCEEEeeCcc
Confidence 5 46666666666666655
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=5.8e-14 Score=133.66 Aligned_cols=122 Identities=20% Similarity=0.229 Sum_probs=55.3
Q ss_pred EEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccC
Q 009053 183 RLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAI 262 (545)
Q Consensus 183 ~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l 262 (545)
.++.+++.+..+|..+. ++|+.|+|++|...+..|..+..+++|+.|++++|......+..+..+++|+.|++++|.+
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 33344444444443332 4444444444444443344444444444444444443222223344455555555555555
Q ss_pred cCCCcc-CCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCC
Q 009053 263 RRPPES-LGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDC 307 (545)
Q Consensus 263 ~~lp~~-l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c 307 (545)
+.++.. +..+++|+.|+|++| .++.+|..+..+++|+.|+|++|
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS
T ss_pred CccChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCC
Confidence 444322 344555555555555 44445544555555555555544
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=1.8e-17 Score=178.80 Aligned_cols=187 Identities=19% Similarity=0.191 Sum_probs=124.1
Q ss_pred CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCC-------------CCCccCCcc-CCccccEEe-ecCCCCC
Q 009053 106 LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCE-------------SLRTLPTSI-QSKYLKRLV-LRGCSNL 170 (545)
Q Consensus 106 l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~-------------~l~~lp~~~-~l~~L~~L~-L~~c~~l 170 (545)
+...++|+.|+|++|. ++.+|..++.+++|+.|++++|. ..+..|..+ .+++|+.|+ ++.+ .+
T Consensus 345 ~~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~ 422 (567)
T 1dce_A 345 SATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YL 422 (567)
T ss_dssp CSTTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HH
T ss_pred cccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-cc
Confidence 4567788888888764 56788888888888888876543 222333333 556666665 3321 11
Q ss_pred CCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCC
Q 009053 171 KNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLK 250 (545)
Q Consensus 171 ~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~ 250 (545)
.. |+.+.+.+|.+..+|.. .|+.|++++|... .+|. +..+++|+.|++++|... .+|..++.++
T Consensus 423 ~~--------L~~l~l~~n~i~~l~~~-----~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 486 (567)
T 1dce_A 423 DD--------LRSKFLLENSVLKMEYA-----DVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR 486 (567)
T ss_dssp HH--------HHHHHHHHHHHHHHHHT-----TCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred ch--------hhhhhhhcccccccCcc-----CceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCC
Confidence 11 44444455555554432 4777777776544 3665 777777777777777655 6777777888
Q ss_pred CCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcc--hhhhcCCCCCCEEeccCCcCccc
Q 009053 251 ALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERA--PESIRHLSKLTSLFISDCKMLQT 312 (545)
Q Consensus 251 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~l--p~~l~~l~~L~~L~L~~c~~l~~ 312 (545)
+|+.|++++|.++.+| .++.+++|+.|+|++| .++.+ |..+..+++|+.|+|++|+..+.
T Consensus 487 ~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 487 CLEVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp TCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 8888888888887777 7777888888888888 66655 77788888888888887764433
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=2.5e-18 Score=185.51 Aligned_cols=215 Identities=18% Similarity=0.228 Sum_probs=153.9
Q ss_pred ccccCccEEEcCCCCCccccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEE
Q 009053 61 IHAENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLD 140 (545)
Q Consensus 61 ~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~ 140 (545)
...++|+.|+|++|.++.+|..++.+++|+.|++++|......|. .+..+...+..|..++.+++|+.|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~----------ll~~~~~~~~~~~~l~~l~~L~~L~ 415 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL----------LMRALDPLLYEKETLQYFSTLKAVD 415 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH----------HHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHH----------HHHhcccccCCHHHHHHHHhcccCc
Confidence 446677788888888888888888888888888765432111110 0011223445667777788888777
Q ss_pred -ecCCCCCCccCCccCCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCcccc
Q 009053 141 -LDRCESLRTLPTSIQSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLP 219 (545)
Q Consensus 141 -L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp 219 (545)
++.+ .+.+|+.+.++++. +..++. ..|+.|++++|.++++|. ++.+++|+.|+|++|... .+|
T Consensus 416 ~l~~n----------~~~~L~~l~l~~n~-i~~l~~---~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp 479 (567)
T 1dce_A 416 PMRAA----------YLDDLRSKFLLENS-VLKMEY---ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALP 479 (567)
T ss_dssp GGGHH----------HHHHHHHHHHHHHH-HHHHHH---TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCC
T ss_pred chhhc----------ccchhhhhhhhccc-ccccCc---cCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccc
Confidence 4432 12334444444421 222221 127888999999999887 899999999999998765 888
Q ss_pred ccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCC--CccCCCCCCCcEEeccCCcCCCcchhh----h
Q 009053 220 SSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRP--PESLGQLSSLQILSLSDNSNLERAPES----I 293 (545)
Q Consensus 220 ~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~~n~~~~~lp~~----l 293 (545)
..++.+++|+.|++++|...+ +| .++.+++|+.|++++|.++.+ |..++.+++|+.|+|++| .+..+|.. +
T Consensus 480 ~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~ 556 (567)
T 1dce_A 480 PALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLA 556 (567)
T ss_dssp GGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHH
T ss_pred hhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHH
Confidence 899999999999999987765 67 899999999999999999987 889999999999999999 66655543 3
Q ss_pred cCCCCCCEEec
Q 009053 294 RHLSKLTSLFI 304 (545)
Q Consensus 294 ~~l~~L~~L~L 304 (545)
..+++|+.|++
T Consensus 557 ~~lp~L~~L~l 567 (567)
T 1dce_A 557 EMLPSVSSILT 567 (567)
T ss_dssp HHCTTCSEEEC
T ss_pred HHCcccCccCC
Confidence 44788888864
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=4.5e-14 Score=132.18 Aligned_cols=174 Identities=18% Similarity=0.177 Sum_probs=76.6
Q ss_pred EEEcCCCCCccccccccCCCCccEEEecCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCC
Q 009053 68 SLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCES 146 (545)
Q Consensus 68 ~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~ 146 (545)
.++..++.++.+|.++ .++|+.|++++|.+....+. +..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~- 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ- 87 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-
Confidence 3444444444444332 23555555555544432222 4455555555555543322222233455555555555543
Q ss_pred CCccCCc-c-CCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCcc-ccCCCCCCEEEecCCCCCcccccccc
Q 009053 147 LRTLPTS-I-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSS-IDRLSKLDTLKIHDCTSLESLPSSLS 223 (545)
Q Consensus 147 l~~lp~~-~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~l~ 223 (545)
+..+|.. + .+++|+.|++++| .+.+++.. +..+++|+.|++++|...+..+..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N----------------------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 145 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTN----------------------QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS----------------------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred CCccCHhHhcCccCCCEEEcCCC----------------------cCcccCHhHhccCCcCCEEECCCCccceeCHHHhc
Confidence 2233221 1 3344444433332 22222222 34445555555555443332233344
Q ss_pred CCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCc-CCCccCCCCC
Q 009053 224 MFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIR-RPPESLGQLS 273 (545)
Q Consensus 224 ~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~ 273 (545)
.+++|+.|++++|... +.+++|+.|++..|.++ .+|..++.++
T Consensus 146 ~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred cCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 5555555555555322 23345556666655555 4555555443
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=7e-14 Score=151.77 Aligned_cols=172 Identities=22% Similarity=0.256 Sum_probs=96.9
Q ss_pred CCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCCCCCCCccccCCccEE
Q 009053 105 DLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSNLKNFPEISSSGIHRL 184 (545)
Q Consensus 105 ~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L 184 (545)
.+..+++|+.|++++|. +..++ .+..+++|+.|+|++|. +..++....+++|+.|+|++|. +..+|
T Consensus 38 ~~~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~---------- 103 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNK-LTDIKPLTNLKNLGWLFLDENK-IKDLS---------- 103 (605)
T ss_dssp CHHHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSC-CCCCT----------
T ss_pred chhcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCCC-CCCChhhccCCCCCEEECcCCC-CCCCh----------
Confidence 34567778888888765 44444 57778888888888864 4444443366777777776653 33333
Q ss_pred EcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcC
Q 009053 185 DLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRR 264 (545)
Q Consensus 185 ~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~ 264 (545)
.+..+++|+.|+|++|.... + ..+..+++|+.|+|++|...+. ..++.+++|+.|+|++|.+..
T Consensus 104 ------------~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 104 ------------SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp ------------TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred ------------hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 34445555555555544332 2 2244555555555555544332 345555555555555555555
Q ss_pred CCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcC
Q 009053 265 PPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKM 309 (545)
Q Consensus 265 lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~ 309 (545)
++. +..+++|+.|+|++| .+..+| .+..+++|+.|+|++|+.
T Consensus 168 ~~~-l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 168 IVP-LAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CGG-GTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred chh-hccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCcC
Confidence 443 555555666666555 455444 355555666666655543
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=1.4e-13 Score=130.16 Aligned_cols=127 Identities=20% Similarity=0.292 Sum_probs=71.2
Q ss_pred ccEEEcccccCcccCc-cccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecC
Q 009053 181 IHRLDLTHVGIKELPS-SIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEG 259 (545)
Q Consensus 181 L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~ 259 (545)
++.|++++|.++.++. .+..+++|+.|+|++|......|..+..+++|++|++++|......+..+..+++|+.|++++
T Consensus 34 l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 113 (220)
T 2v9t_B 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA 113 (220)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCC
Confidence 5566666666665554 455566666666666655554455566666666666666554433333455566666666666
Q ss_pred ccCcCC-CccCCCCCCCcEEeccCCcCCCcchh-hhcCCCCCCEEeccCCc
Q 009053 260 TAIRRP-PESLGQLSSLQILSLSDNSNLERAPE-SIRHLSKLTSLFISDCK 308 (545)
Q Consensus 260 n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~lp~-~l~~l~~L~~L~L~~c~ 308 (545)
|.++.+ |..+..+++|+.|+|++| .++.++. .+..+++|+.|++++|+
T Consensus 114 N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 114 NKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 666544 344555566666666666 4443332 35555555555555544
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=2e-13 Score=130.01 Aligned_cols=152 Identities=20% Similarity=0.178 Sum_probs=129.0
Q ss_pred ccccEEeecCCCCCCCCCccccCCccEEEcccccCccc-CccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeC
Q 009053 157 KYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKEL-PSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIY 235 (545)
Q Consensus 157 ~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~ 235 (545)
.+.+.++.++ ..++.+|......++.|++++|.+.++ |..+..+++|+.|+|++|......+..+..+++|+.|++++
T Consensus 19 Cs~~~v~c~~-~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 19 CSGTTVDCRS-KRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp EETTEEECTT-SCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EeCCEeEccC-CCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 3466788876 567888876665699999999999988 56788999999999999886444445578999999999999
Q ss_pred CCCCCccccccCCCCCCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcch-hhhcCCCCCCEEeccCCcCc
Q 009053 236 CPKLKRLPDELGNLKALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAP-ESIRHLSKLTSLFISDCKML 310 (545)
Q Consensus 236 c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~c~~l 310 (545)
|...+..+..+..+++|+.|++++|.++.+|..+..+++|+.|+|++| .+..+| ..+..+++|+.|++++|+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 987766667789999999999999999999999999999999999999 777776 45788999999999988643
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=1e-13 Score=141.32 Aligned_cols=147 Identities=24% Similarity=0.232 Sum_probs=96.5
Q ss_pred EEeecCCCCCCCCCccccCCccEEEcccccCcccCcc-cc-CCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCC
Q 009053 161 RLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSS-ID-RLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPK 238 (545)
Q Consensus 161 ~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~-~~-~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~ 238 (545)
.+++++ ..++.+|......++.|++++|.+++++.. +. .+++|+.|+|++|......+..+..+++|+.|++++|..
T Consensus 22 ~l~c~~-~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 22 ILSCSK-QQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp EEECCS-SCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCC-CCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 344444 234445544333466777777777776554 33 677777777777765555555677777777777777766
Q ss_pred CCccccccCCCCCCcEEEecCccCcCC-CccCCCCCCCcEEeccCCcCCCcchhhh----cCCCCCCEEeccCCcC
Q 009053 239 LKRLPDELGNLKALEELRVEGTAIRRP-PESLGQLSSLQILSLSDNSNLERAPESI----RHLSKLTSLFISDCKM 309 (545)
Q Consensus 239 ~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~lp~~l----~~l~~L~~L~L~~c~~ 309 (545)
....+..+..+++|+.|++++|.++.+ |..+..+++|+.|+|++| .+..+|..+ ..+++|+.|+|++|+.
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 555555677777777777777777755 556777777777777777 666666554 4577777777777653
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=3.6e-13 Score=127.29 Aligned_cols=146 Identities=21% Similarity=0.312 Sum_probs=122.5
Q ss_pred ccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCc
Q 009053 181 IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGT 260 (545)
Q Consensus 181 L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n 260 (545)
-+.++++++.++++|..+. ++|+.|++++|......+..+..+++|+.|++++|...+..|..+.++++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4567888888889988765 78999999998876666667899999999999999988888999999999999999999
Q ss_pred cCcCCCcc-CCCCCCCcEEeccCCcCCCcc-hhhhcCCCCCCEEeccCCcCccccCC---CCCCccEEeccCCC
Q 009053 261 AIRRPPES-LGQLSSLQILSLSDNSNLERA-PESIRHLSKLTSLFISDCKMLQTLPE---LPCNLHDLDASGCT 329 (545)
Q Consensus 261 ~l~~lp~~-l~~l~~L~~L~L~~n~~~~~l-p~~l~~l~~L~~L~L~~c~~l~~ip~---~~~sL~~L~l~~c~ 329 (545)
.++.+|.. +..+++|+.|+|++| .+..+ |..+..+++|+.|+|++|......+. ..++|+.|++++++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 99998765 578999999999999 66654 67889999999999999875443333 23578888888763
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=8.6e-14 Score=135.40 Aligned_cols=173 Identities=20% Similarity=0.258 Sum_probs=122.1
Q ss_pred cccCccEEEcCCCCCccccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEe
Q 009053 62 HAENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDL 141 (545)
Q Consensus 62 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L 141 (545)
.+.+++.+++..+.++.++ .+..+++|+.|++++|.+. .++.+..+++|+.|++++|. +..++. +..+++|+.|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCC-CCTTGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcc-cchHHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEEC
Confidence 4556777778888887776 5677888888888887654 45677778888888888764 444544 777888888888
Q ss_pred cCCCCCCccCCccCCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCcccccc
Q 009053 142 DRCESLRTLPTSIQSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSS 221 (545)
Q Consensus 142 ~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~ 221 (545)
++|. ++.+|.... ++ |+.|++++|.+++++ .+..+++|+.|++++|...+ ++ .
T Consensus 93 ~~N~-l~~l~~~~~-~~----------------------L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~-~ 145 (263)
T 1xeu_A 93 NRNR-LKNLNGIPS-AC----------------------LSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS-IV-M 145 (263)
T ss_dssp CSSC-CSCCTTCCC-SS----------------------CCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-CG-G
T ss_pred CCCc-cCCcCcccc-Cc----------------------ccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC-Ch-H
Confidence 8764 333443212 33 566666666666654 47778888888888876543 44 5
Q ss_pred ccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCc
Q 009053 222 LSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPE 267 (545)
Q Consensus 222 l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~ 267 (545)
+..+++|+.|++++|...+. ..+..+++|+.|++++|.+...|.
T Consensus 146 l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 146 LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 77788888888888776654 667888899999999988876653
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=1.4e-13 Score=124.14 Aligned_cols=126 Identities=20% Similarity=0.235 Sum_probs=100.1
Q ss_pred ccEEEcccccCc--ccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEec
Q 009053 181 IHRLDLTHVGIK--ELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVE 258 (545)
Q Consensus 181 L~~L~l~~~~i~--~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~ 258 (545)
++.|++++|.+. .+|..+..+++|+.|++++|.... + ..+..+++|+.|++++|...+.+|..+..+++|+.|+++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 777777777777 777777888888888888877544 3 667788888888888888777777777778888888888
Q ss_pred CccCcCCC--ccCCCCCCCcEEeccCCcCCCcchh----hhcCCCCCCEEeccCCcC
Q 009053 259 GTAIRRPP--ESLGQLSSLQILSLSDNSNLERAPE----SIRHLSKLTSLFISDCKM 309 (545)
Q Consensus 259 ~n~l~~lp--~~l~~l~~L~~L~L~~n~~~~~lp~----~l~~l~~L~~L~L~~c~~ 309 (545)
+|.++.+| ..+..+++|+.|++++| .+..+|. .+..+++|+.|++++|..
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 88888775 67788888888888888 6666665 677888888888888753
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.47 E-value=3.6e-13 Score=137.29 Aligned_cols=128 Identities=20% Similarity=0.290 Sum_probs=105.8
Q ss_pred ccEEEcccccCcccCc-cccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecC
Q 009053 181 IHRLDLTHVGIKELPS-SIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEG 259 (545)
Q Consensus 181 L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~ 259 (545)
|+.|++++|.+.+++. .+..+++|+.|+|++|......+..+..+++|+.|++++|......|..+..+++|+.|++++
T Consensus 66 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence 7777777777887764 588899999999999886665566788999999999999998877788999999999999999
Q ss_pred ccCcCCCccC----CCCCCCcEEeccCCcCCCcch-hhhcCCCC--CCEEeccCCcC
Q 009053 260 TAIRRPPESL----GQLSSLQILSLSDNSNLERAP-ESIRHLSK--LTSLFISDCKM 309 (545)
Q Consensus 260 n~l~~lp~~l----~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~--L~~L~L~~c~~ 309 (545)
|.++.+|..+ ..+++|+.|+|++| .++.+| ..+..++. |+.|+|++|+.
T Consensus 146 N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 146 NQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp SCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCCc
Confidence 9999998765 57999999999999 777776 45677776 47888888764
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=1e-12 Score=124.16 Aligned_cols=146 Identities=14% Similarity=0.152 Sum_probs=121.8
Q ss_pred ccEEEcccccCcccCccccCCCCCCEEEecCCCCCcccc-ccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecC
Q 009053 181 IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLP-SSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEG 259 (545)
Q Consensus 181 L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~ 259 (545)
-+.++++++.++++|..+. +.++.|++++|...+..+ ..+..+++|+.|++++|...+..+..++.+++|++|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 5789999999999998764 467899999988766544 3478999999999999988777777899999999999999
Q ss_pred ccCcCCCc-cCCCCCCCcEEeccCCcCCCcc-hhhhcCCCCCCEEeccCCcCccccCCC---CCCccEEeccCCC
Q 009053 260 TAIRRPPE-SLGQLSSLQILSLSDNSNLERA-PESIRHLSKLTSLFISDCKMLQTLPEL---PCNLHDLDASGCT 329 (545)
Q Consensus 260 n~l~~lp~-~l~~l~~L~~L~L~~n~~~~~l-p~~l~~l~~L~~L~L~~c~~l~~ip~~---~~sL~~L~l~~c~ 329 (545)
|.++.++. .+..+++|+.|+|++| .+..+ |..+..+++|+.|+|++|...+..|.. .++|+.|++++++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 99998865 5889999999999999 66654 778999999999999998765554543 3578888887763
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=1.9e-13 Score=120.64 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=88.8
Q ss_pred ccEEEcccccCc--ccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEec
Q 009053 181 IHRLDLTHVGIK--ELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVE 258 (545)
Q Consensus 181 L~~L~l~~~~i~--~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~ 258 (545)
++.|+++++.+. .+|..+..+++|+.|++++|..... ..+..+++|+.|++++|...+.+|..++.+++|++|+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 667777777776 6777777788888888888755443 556777788888888877766677777777778888888
Q ss_pred CccCcCCC--ccCCCCCCCcEEeccCCcCCCcchh----hhcCCCCCCEEecc
Q 009053 259 GTAIRRPP--ESLGQLSSLQILSLSDNSNLERAPE----SIRHLSKLTSLFIS 305 (545)
Q Consensus 259 ~n~l~~lp--~~l~~l~~L~~L~L~~n~~~~~lp~----~l~~l~~L~~L~L~ 305 (545)
+|.++.++ ..+..+++|+.|++++| .++.+|. .+..+++|+.|+++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 87777654 66777777888888777 5665554 56777777777765
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=8.6e-13 Score=128.30 Aligned_cols=166 Identities=23% Similarity=0.282 Sum_probs=89.7
Q ss_pred CCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCCCCCCCccccCCccEEEcccc
Q 009053 110 QNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHV 189 (545)
Q Consensus 110 ~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~ 189 (545)
.++..+++.++. +..++ .+..+++|+.|++++| .+..++....+++ |+.|++++|
T Consensus 19 ~~l~~l~l~~~~-i~~~~-~~~~l~~L~~L~l~~n-~i~~l~~l~~l~~----------------------L~~L~L~~N 73 (263)
T 1xeu_A 19 ANAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNS-NIQSLAGMQFFTN----------------------LKELHLSHN 73 (263)
T ss_dssp HHHHHHHHTCSC-TTSEE-CHHHHTTCSEEECTTS-CCCCCTTGGGCTT----------------------CCEEECCSS
T ss_pred HHHHHHHhcCCC-ccccc-chhhcCcCcEEECcCC-CcccchHHhhCCC----------------------CCEEECCCC
Confidence 344455555432 33333 4455566666666665 2344442223444 344444444
Q ss_pred cCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCccC
Q 009053 190 GIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPESL 269 (545)
Q Consensus 190 ~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l 269 (545)
.+.+++. +..+++|+.|++++|...+ +|... . ++|+.|++++|...+ + ..++.+++|+.|++++|.++.++ .+
T Consensus 74 ~i~~~~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~~-~l 146 (263)
T 1xeu_A 74 QISDLSP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSIV-ML 146 (263)
T ss_dssp CCCCCGG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBCG-GG
T ss_pred ccCCChh-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCCh-HH
Confidence 4445544 5666666666666654332 33322 2 566666666665433 2 24666666666666666666654 45
Q ss_pred CCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcC
Q 009053 270 GQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKM 309 (545)
Q Consensus 270 ~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~ 309 (545)
..+++|+.|++++| .+..+ ..+..+++|+.|++++|+.
T Consensus 147 ~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 147 GFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp GGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred ccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCCcc
Confidence 66666666666666 55544 4456666666666666553
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=9e-14 Score=154.48 Aligned_cols=143 Identities=20% Similarity=0.253 Sum_probs=106.4
Q ss_pred ccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCc
Q 009053 181 IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGT 260 (545)
Q Consensus 181 L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n 260 (545)
|+.|+|++|.+..+|..+..+++|+.|+|++|... .+|..+..+++|+.|+|++|... .+|..++++++|++|+|++|
T Consensus 226 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N 303 (727)
T 4b8c_D 226 WHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN 303 (727)
T ss_dssp CCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSS
T ss_pred CcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCC
Confidence 77888888888888888888999999999998766 78888889999999999998866 77888899999999999999
Q ss_pred cCcCCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCC-CCEEeccCCcCccccCCCCCCccEEeccCC
Q 009053 261 AIRRPPESLGQLSSLQILSLSDNSNLERAPESIRHLSK-LTSLFISDCKMLQTLPELPCNLHDLDASGC 328 (545)
Q Consensus 261 ~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~-L~~L~L~~c~~l~~ip~~~~sL~~L~l~~c 328 (545)
.++.+|..++.+++|+.|+|++|...+.+|..+..+.. +..|++++|.....+| ..|+.|+++.+
T Consensus 304 ~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p---~~l~~l~l~~n 369 (727)
T 4b8c_D 304 MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP---HERRFIEINTD 369 (727)
T ss_dssp CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC---CC---------
T ss_pred CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc---cccceeEeecc
Confidence 99989888999999999999999444466666544322 2246788777655444 46777777766
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.37 E-value=3.4e-12 Score=117.87 Aligned_cols=126 Identities=24% Similarity=0.295 Sum_probs=77.8
Q ss_pred cEEEcccccCcccCccccCCCCCCEEEecCCCCCccccc-cccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCc
Q 009053 182 HRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPS-SLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGT 260 (545)
Q Consensus 182 ~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n 260 (545)
+.++++++.++++|..+.. +|+.|++++|...+..+. .+..+++|++|++++|...+..|..++++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4556666666666654433 666666666654333332 2566666666666666666666666667777777777777
Q ss_pred cCcCCC-ccCCCCCCCcEEeccCCcCCC-cchhhhcCCCCCCEEeccCCcCc
Q 009053 261 AIRRPP-ESLGQLSSLQILSLSDNSNLE-RAPESIRHLSKLTSLFISDCKML 310 (545)
Q Consensus 261 ~l~~lp-~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~c~~l 310 (545)
.++.++ ..+..+++|+.|+|++| .++ ..|..+..+++|+.|++++|+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 776553 34666777777777777 444 44566666777777777766543
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=2.1e-12 Score=116.43 Aligned_cols=137 Identities=21% Similarity=0.235 Sum_probs=101.7
Q ss_pred CCCCCCEEEecCCCCC-CccCCcc-CCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEe
Q 009053 132 YLNKLEVLDLDRCESL-RTLPTSI-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKI 209 (545)
Q Consensus 132 ~l~~L~~L~L~~c~~l-~~lp~~~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L 209 (545)
..++|+.|++++|... ..+|..+ .+++|+.|++++| .++.+ ..+..+++|+.|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n----------------------~l~~~-~~~~~l~~L~~L~L 78 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV----------------------GLISV-SNLPKLPKLKKLEL 78 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS----------------------CCCCC-SSCCCCSSCCEEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC----------------------CCCCh-hhhccCCCCCEEEC
Confidence 4467888888877543 3666554 5666666665554 44444 55677888888888
Q ss_pred cCCCCCccccccccCCCCCcEEEEeCCCCCCc-cccccCCCCCCcEEEecCccCcCCCc----cCCCCCCCcEEeccCCc
Q 009053 210 HDCTSLESLPSSLSMFKSLTSLEIIYCPKLKR-LPDELGNLKALEELRVEGTAIRRPPE----SLGQLSSLQILSLSDNS 284 (545)
Q Consensus 210 ~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~-lp~~l~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~~n~ 284 (545)
++|.....+|..+..+++|+.|++++|...+. .+..++.+++|+.|++++|.++.+|. .+..+++|+.|++++|
T Consensus 79 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n- 157 (168)
T 2ell_A 79 SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR- 157 (168)
T ss_dssp ESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-
T ss_pred cCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-
Confidence 88887776777777788899999988866543 22678889999999999999988876 7888999999999999
Q ss_pred CCCcchhh
Q 009053 285 NLERAPES 292 (545)
Q Consensus 285 ~~~~lp~~ 292 (545)
....+|..
T Consensus 158 ~~~~~~~~ 165 (168)
T 2ell_A 158 EDQEAPDS 165 (168)
T ss_dssp TSCBCCSS
T ss_pred Chhhcccc
Confidence 66666643
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=1e-11 Score=114.75 Aligned_cols=123 Identities=25% Similarity=0.350 Sum_probs=71.6
Q ss_pred cEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCcc
Q 009053 182 HRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTA 261 (545)
Q Consensus 182 ~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~ 261 (545)
+.++++++.++++|..+. ++|+.|++++|.. ..+|..+..+++|+.|++++|...+..+..+.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 345555555555554432 4556666665443 2455555556666666666655555455556666666666666666
Q ss_pred CcCCC-ccCCCCCCCcEEeccCCcCCCcchh-hhcCCCCCCEEeccCCc
Q 009053 262 IRRPP-ESLGQLSSLQILSLSDNSNLERAPE-SIRHLSKLTSLFISDCK 308 (545)
Q Consensus 262 l~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~-~l~~l~~L~~L~L~~c~ 308 (545)
++.++ ..+..+++|+.|+|++| .++.+|. .+..+++|+.|++++|+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 66554 34666666777777666 5555554 35566666666666654
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=1.2e-11 Score=114.17 Aligned_cols=122 Identities=21% Similarity=0.269 Sum_probs=103.7
Q ss_pred EEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCC
Q 009053 161 RLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLK 240 (545)
Q Consensus 161 ~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~ 240 (545)
.+++++ ..++.+|......++.|++++|.++.+|..+..+++|+.|+|++|......+..+..+++|++|++++|....
T Consensus 14 ~l~~~~-~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 14 VVRCSN-KGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp EEECTT-SCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred EEEcCC-CCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 444444 2345555443334899999999999999999999999999999998877777789999999999999999888
Q ss_pred ccccccCCCCCCcEEEecCccCcCCCc-cCCCCCCCcEEeccCC
Q 009053 241 RLPDELGNLKALEELRVEGTAIRRPPE-SLGQLSSLQILSLSDN 283 (545)
Q Consensus 241 ~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n 283 (545)
..|..+..+++|+.|++++|.++.+|. .+..+++|+.|+|++|
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 778889999999999999999998876 5788999999999999
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.33 E-value=9.6e-12 Score=124.99 Aligned_cols=100 Identities=11% Similarity=0.110 Sum_probs=68.3
Q ss_pred CCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCcc-ccccCCCCCCc-EEEecCccCcCC-CccCCCCCCCcE
Q 009053 201 LSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRL-PDELGNLKALE-ELRVEGTAIRRP-PESLGQLSSLQI 277 (545)
Q Consensus 201 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~l-p~~l~~l~~L~-~L~L~~n~l~~l-p~~l~~l~~L~~ 277 (545)
+++|+.++|++|.....-+..+..+++|++|++.++ +..+ +..|.++.+|+ .+++.+ .++.+ +.++.++++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 667777777765543333345667777777777765 3333 35677788887 888877 66655 367778888888
Q ss_pred EeccCCcCCCcchh-hhcCCCCCCEEec
Q 009053 278 LSLSDNSNLERAPE-SIRHLSKLTSLFI 304 (545)
Q Consensus 278 L~L~~n~~~~~lp~-~l~~l~~L~~L~L 304 (545)
+++++| .+..++. .+.++++|+.++.
T Consensus 302 l~l~~n-~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGD-KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSS-CCCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCC-ccCccchhhhcCCcchhhhcc
Confidence 888777 6666654 6777888887764
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=1.2e-11 Score=114.16 Aligned_cols=124 Identities=20% Similarity=0.200 Sum_probs=103.2
Q ss_pred cEEeecCCCCCCCCCccccCCccEEEcccccCcccCcc--ccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCC
Q 009053 160 KRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSS--IDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCP 237 (545)
Q Consensus 160 ~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~--~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~ 237 (545)
+.++++++ .++.+|......++.|++++|.+.+++.. ++.+++|+.|+|++|...+..|..+..+++|+.|++++|.
T Consensus 11 ~~l~~s~~-~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTS-CCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCC-CcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 44555542 34555543333488888888888888764 8899999999999998888778899999999999999999
Q ss_pred CCCccccccCCCCCCcEEEecCccCcCC-CccCCCCCCCcEEeccCCc
Q 009053 238 KLKRLPDELGNLKALEELRVEGTAIRRP-PESLGQLSSLQILSLSDNS 284 (545)
Q Consensus 238 ~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~ 284 (545)
..+..+..++.+++|++|++++|.++.+ |..+..+++|+.|+|++|.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 8888888899999999999999999955 7789999999999999994
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.32 E-value=1.4e-11 Score=112.07 Aligned_cols=128 Identities=16% Similarity=0.241 Sum_probs=90.0
Q ss_pred ccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCc
Q 009053 181 IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGT 260 (545)
Q Consensus 181 L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n 260 (545)
.+.++++++.+.++|..+ .++|+.|++++|...+..+..+..+++|++|++++|...+..+..++.+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 456667777777776544 357778888777655444445677778888888877665555556677888888888888
Q ss_pred cCcCCCcc-CCCCCCCcEEeccCCcCCCcchhh-hcCCCCCCEEeccCCcCcc
Q 009053 261 AIRRPPES-LGQLSSLQILSLSDNSNLERAPES-IRHLSKLTSLFISDCKMLQ 311 (545)
Q Consensus 261 ~l~~lp~~-l~~l~~L~~L~L~~n~~~~~lp~~-l~~l~~L~~L~L~~c~~l~ 311 (545)
.++.+|.. +..+++|+.|++++| .++.+|.. +..+++|+.|++++|+...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 88877654 577888888888888 66666654 4667888888888776543
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=2.5e-12 Score=116.89 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=68.7
Q ss_pred ccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCc
Q 009053 181 IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGT 260 (545)
Q Consensus 181 L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n 260 (545)
++.|++++|.++.+|......++|+.|++++|...+ + ..+..+++|+.|++++|...+..+..++.+++|++|++++|
T Consensus 21 L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 21 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98 (176)
T ss_dssp CEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC
T ss_pred ceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC
Confidence 444444555555554322223366666666654433 2 34555666666666665544322233355666666666666
Q ss_pred cCcCCCc--cCCCCCCCcEEeccCCcCCCcchhh----hcCCCCCCEEeccCCc
Q 009053 261 AIRRPPE--SLGQLSSLQILSLSDNSNLERAPES----IRHLSKLTSLFISDCK 308 (545)
Q Consensus 261 ~l~~lp~--~l~~l~~L~~L~L~~n~~~~~lp~~----l~~l~~L~~L~L~~c~ 308 (545)
.++.+|. .+..+++|+.|++++| .+..+|.. +..+++|+.|++++|.
T Consensus 99 ~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 99 SLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 6665554 5556666666666666 45555543 5666666666666554
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.31 E-value=5.2e-13 Score=148.35 Aligned_cols=148 Identities=20% Similarity=0.245 Sum_probs=69.7
Q ss_pred cccccCCCCCCEEEecCCCCCCccCCcc-CCccccEEeecCCCCCCCCCccccCC--ccEEEcccccCcccCccccCCCC
Q 009053 127 HSSIQYLNKLEVLDLDRCESLRTLPTSI-QSKYLKRLVLRGCSNLKNFPEISSSG--IHRLDLTHVGIKELPSSIDRLSK 203 (545)
Q Consensus 127 ~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~p~~~~~~--L~~L~l~~~~i~~lp~~~~~l~~ 203 (545)
+..+..+++|+.|+|++|. +..+|..+ .+++|+.|+|++|. ++.+|...... |+.|+|++|.++.+|..++.+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 3334444444444444443 22343333 44444444444432 22333322221 55555555556666666677777
Q ss_pred CCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCC-CcEEEecCccCc-CCCccCCCCCCCcEEecc
Q 009053 204 LDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKA-LEELRVEGTAIR-RPPESLGQLSSLQILSLS 281 (545)
Q Consensus 204 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~-L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~ 281 (545)
|++|+|++|.. +.+|..+..+++|+.|+|++|...+.+|..+..+.. +..+++++|.++ .+|. .|+.|+++
T Consensus 295 L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~ 367 (727)
T 4b8c_D 295 LKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEIN 367 (727)
T ss_dssp CSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-------
T ss_pred CCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEee
Confidence 77777777643 466666777777777777777666666655544321 123556666655 2332 44555555
Q ss_pred CC
Q 009053 282 DN 283 (545)
Q Consensus 282 ~n 283 (545)
.|
T Consensus 368 ~n 369 (727)
T 4b8c_D 368 TD 369 (727)
T ss_dssp --
T ss_pred cc
Confidence 54
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=4.1e-12 Score=112.02 Aligned_cols=124 Identities=23% Similarity=0.279 Sum_probs=103.0
Q ss_pred CCCCCCEEEecCCCCC-ccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcC-CCccCCCCCCCcE
Q 009053 200 RLSKLDTLKIHDCTSL-ESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRR-PPESLGQLSSLQI 277 (545)
Q Consensus 200 ~l~~L~~L~L~~~~~l-~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~ 277 (545)
..++|+.|++++|... +.+|..+..+++|+.|++++|...+. ..++.+++|++|++++|.++. +|..+..+++|+.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3478999999999876 68888889999999999999876554 778899999999999999997 7777777999999
Q ss_pred EeccCCcCCCcch--hhhcCCCCCCEEeccCCcCccccCC-------CCCCccEEeccC
Q 009053 278 LSLSDNSNLERAP--ESIRHLSKLTSLFISDCKMLQTLPE-------LPCNLHDLDASG 327 (545)
Q Consensus 278 L~L~~n~~~~~lp--~~l~~l~~L~~L~L~~c~~l~~ip~-------~~~sL~~L~l~~ 327 (545)
|++++| .++.+| ..+..+++|++|++++|.. ..+|. ..++|+.|++++
T Consensus 93 L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccCCC
Confidence 999999 777655 7899999999999999864 44444 236788877653
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=4.6e-12 Score=115.20 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=55.1
Q ss_pred CccEEEcCCCCCccccccccCCCCccEEEecCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccc--cccCCCCCCEEEe
Q 009053 65 NLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHS--SIQYLNKLEVLDL 141 (545)
Q Consensus 65 ~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~--~i~~l~~L~~L~L 141 (545)
+|++|++++|.++.+ ..+..+++|+.|+|++|.+....+. +..+++|+.|++++|.. ..+|. .+..+++|+.|++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEe
Confidence 455555555555554 4455556666666666555433333 25556666666665532 44444 5556666666666
Q ss_pred cCCCCCCccCCc----c-CCccccEEeecCCC
Q 009053 142 DRCESLRTLPTS----I-QSKYLKRLVLRGCS 168 (545)
Q Consensus 142 ~~c~~l~~lp~~----~-~l~~L~~L~L~~c~ 168 (545)
++|. +..+|.. + .+++|+.|+++++.
T Consensus 121 ~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 121 LRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 6653 3344543 3 56666666666553
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.22 E-value=1.3e-10 Score=105.47 Aligned_cols=125 Identities=21% Similarity=0.272 Sum_probs=97.2
Q ss_pred cEEeecCCCCCCCCCccccCCccEEEcccccCcccCcc-ccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCC
Q 009053 160 KRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSS-IDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPK 238 (545)
Q Consensus 160 ~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~ 238 (545)
+.++++++ .+..+|......++.|++++|.++++|.. +..+++|++|++++|......+..+..+++|+.|++++|..
T Consensus 10 ~~l~~~~~-~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSK-GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSS-CCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCC-CCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 34444442 34444443333488888888888887764 57899999999999876655555578999999999999988
Q ss_pred CCccccccCCCCCCcEEEecCccCcCCCcc-CCCCCCCcEEeccCCcC
Q 009053 239 LKRLPDELGNLKALEELRVEGTAIRRPPES-LGQLSSLQILSLSDNSN 285 (545)
Q Consensus 239 ~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~~ 285 (545)
.+..+..++.+++|+.|++++|.++.+|.. +..+++|+.|++++|..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 776667789999999999999999988765 47899999999999943
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.21 E-value=5.5e-11 Score=119.40 Aligned_cols=80 Identities=13% Similarity=0.119 Sum_probs=48.0
Q ss_pred CCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCC-ccCCCCCCCc-EEeccCCcCCCcch-hhhcCCCCCCE
Q 009053 225 FKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPP-ESLGQLSSLQ-ILSLSDNSNLERAP-ESIRHLSKLTS 301 (545)
Q Consensus 225 l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~-~L~L~~n~~~~~lp-~~l~~l~~L~~ 301 (545)
+++|+.+++++|.....-+..|.++.+|+.+++.+| ++.++ .++.++++|+ .+++.+ .++.++ ..+.+|++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCE
Confidence 566777777665544333345666777777777665 55443 3556666676 777666 244443 45666677777
Q ss_pred EeccCC
Q 009053 302 LFISDC 307 (545)
Q Consensus 302 L~L~~c 307 (545)
++++++
T Consensus 302 l~l~~n 307 (329)
T 3sb4_A 302 VLATGD 307 (329)
T ss_dssp EEECSS
T ss_pred EEeCCC
Confidence 766554
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.12 E-value=8.4e-09 Score=106.23 Aligned_cols=228 Identities=14% Similarity=0.170 Sum_probs=105.8
Q ss_pred CccEEEeCCCCCCcc---cccccCccEEEcCCCCCcccc-ccccCCCCccEEEecCCCCCCCCCC-CCCCCCccEEEeeC
Q 009053 45 EVRYFEWHQYPLKTL---DIHAENLVSLKMPGSKVKQLW-DDVQNLVNLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGG 119 (545)
Q Consensus 45 ~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~ 119 (545)
+|+.+.+..+ ++.+ .|.-.+|+++.++. .++.+. ..+..+++|+.++|+++.+...... |. ..+|+.+.+..
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~ 212 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV 212 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC
Confidence 4555555443 4444 33334566666654 444444 3455666666666665544332222 32 45666666653
Q ss_pred CCCCcccc-ccccCCCCCCEEEecCCCCCCccCCcc-CCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCcc
Q 009053 120 CSSLTETH-SSIQYLNKLEVLDLDRCESLRTLPTSI-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSS 197 (545)
Q Consensus 120 c~~l~~~~-~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~ 197 (545)
+ +..++ ..+.++++|+.+++.. .+..++... .-.+|+.+.+... +..++ ...
T Consensus 213 ~--l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~~--i~~I~--------------------~~a 266 (401)
T 4fdw_A 213 T--LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPNG--VTNIA--------------------SRA 266 (401)
T ss_dssp T--CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEETT--CCEEC--------------------TTT
T ss_pred c--hheehhhHhhCCCCCCEEecCC--CccCccccccccCCccEEEeCCC--ccEEC--------------------hhH
Confidence 2 33332 3445566666666654 244444433 3355666665331 22211 112
Q ss_pred ccCCCCCCEEEecCCCCC-----ccccccccCCCCCcEEEEeCCCCCCcc-ccccCCCCCCcEEEecCccCcCC-CccCC
Q 009053 198 IDRLSKLDTLKIHDCTSL-----ESLPSSLSMFKSLTSLEIIYCPKLKRL-PDELGNLKALEELRVEGTAIRRP-PESLG 270 (545)
Q Consensus 198 ~~~l~~L~~L~L~~~~~l-----~~lp~~l~~l~~L~~L~Ls~c~~~~~l-p~~l~~l~~L~~L~L~~n~l~~l-p~~l~ 270 (545)
+.+|++|+.+.+.++... ..-+..+..+++|+.+.+.. . +..+ ...|.++.+|+.+.+..+ ++.+ ..++.
T Consensus 267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~-i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~ 343 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-S-IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN 343 (401)
T ss_dssp TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-T-CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSS
T ss_pred hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-c-eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC
Confidence 344444444444443221 11122344455555555542 1 2222 234555556666665433 3333 23455
Q ss_pred CCCCCcEEeccCCcCCCcch-hhhcCCC-CCCEEeccC
Q 009053 271 QLSSLQILSLSDNSNLERAP-ESIRHLS-KLTSLFISD 306 (545)
Q Consensus 271 ~l~~L~~L~L~~n~~~~~lp-~~l~~l~-~L~~L~L~~ 306 (545)
++ +|+.+.+.+| ....++ ..+.+++ +++.|++..
T Consensus 344 ~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 344 NT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp SS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred CC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence 55 6666666666 333322 2334442 556666654
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=5.5e-10 Score=101.20 Aligned_cols=100 Identities=15% Similarity=0.225 Sum_probs=51.0
Q ss_pred cEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCcc
Q 009053 182 HRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTA 261 (545)
Q Consensus 182 ~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~ 261 (545)
+.++++++.+.++|..+. ++|+.|+|++|...+..|..+..+++|+.|++++|...+..+..+.++++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 456666666666665543 566666666655444444445555555555555544333222334445555555555555
Q ss_pred CcCCCcc-CCCCCCCcEEeccCC
Q 009053 262 IRRPPES-LGQLSSLQILSLSDN 283 (545)
Q Consensus 262 l~~lp~~-l~~l~~L~~L~L~~n 283 (545)
++.+|.. +..+++|+.|+|++|
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS
T ss_pred cceeCHHHhccccCCCEEEeCCC
Confidence 5544432 444445555555544
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.08 E-value=3e-12 Score=118.83 Aligned_cols=120 Identities=19% Similarity=0.256 Sum_probs=85.1
Q ss_pred cCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCccC
Q 009053 190 GIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPESL 269 (545)
Q Consensus 190 ~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l 269 (545)
.++.+|..+..+++|+.|++++|.... +| .+..+++|+.|++++|... .+|..+..+++|+.|++++|.++.+| .+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~ 111 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-cc
Confidence 455566677777788888887765443 56 6777778888888777554 56666666777888888888777766 56
Q ss_pred CCCCCCcEEeccCCcCCCcchh--hhcCCCCCCEEeccCCcCccccC
Q 009053 270 GQLSSLQILSLSDNSNLERAPE--SIRHLSKLTSLFISDCKMLQTLP 314 (545)
Q Consensus 270 ~~l~~L~~L~L~~n~~~~~lp~--~l~~l~~L~~L~L~~c~~l~~ip 314 (545)
..+++|+.|++++| .++.++. .+..+++|+.|++++|+....+|
T Consensus 112 ~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 112 EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred ccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 67778888888888 6665553 67778888888888876544433
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=7.8e-10 Score=99.76 Aligned_cols=101 Identities=18% Similarity=0.242 Sum_probs=61.0
Q ss_pred ccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCc
Q 009053 181 IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGT 260 (545)
Q Consensus 181 L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n 260 (545)
.+.++++++.++++|..+. ++|+.|+|++|...+..|..+..+++|+.|++++|...+..+..+..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 5667777777777776553 66777777776655555555666666666666665554444444556666666666666
Q ss_pred cCcCCCc-cCCCCCCCcEEeccCC
Q 009053 261 AIRRPPE-SLGQLSSLQILSLSDN 283 (545)
Q Consensus 261 ~l~~lp~-~l~~l~~L~~L~L~~n 283 (545)
.++.+|. .+..+++|+.|+|++|
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 6665544 3555566666666655
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.02 E-value=1.7e-08 Score=103.99 Aligned_cols=245 Identities=15% Similarity=0.197 Sum_probs=149.0
Q ss_pred cCccEEEcCCCCCcccc-ccccCCCCccEEEecCCCCCCCCC--CCCCCCCccEEEeeCCCCCcccc-ccccCCCCCCEE
Q 009053 64 ENLVSLKMPGSKVKQLW-DDVQNLVNLKKIDLWYSKLLTKLP--DLSLAQNLEILDLGGCSSLTETH-SSIQYLNKLEVL 139 (545)
Q Consensus 64 ~~L~~L~L~~~~l~~l~-~~~~~l~~L~~LdLs~~~~~~~~p--~l~~l~~L~~L~L~~c~~l~~~~-~~i~~l~~L~~L 139 (545)
..+.++.++.+ ++.++ ..+.++ +|+.+++..+ +..++ .|.. .+|+.+.+.. .+..+. ..+..+++|+.+
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEE
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCee
Confidence 45555655543 44333 233443 5666666554 23333 2444 3566666654 333333 445566666666
Q ss_pred EecCCCCCCccCCcc-CCccccEEeecCCCCCCCCCcccc-CC--ccEEEcccccCcccCccccCCCCCCEEEecCCCCC
Q 009053 140 DLDRCESLRTLPTSI-QSKYLKRLVLRGCSNLKNFPEISS-SG--IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSL 215 (545)
Q Consensus 140 ~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~p~~~~-~~--L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l 215 (545)
++.++ .+..++... .+.+|+.+.+... ++.++.... .+ |+.+.+..+ ++.++.....-.+|+.+.+.+ . +
T Consensus 186 ~l~~n-~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~-~-i 259 (401)
T 4fdw_A 186 DLSKT-KITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPN-G-V 259 (401)
T ss_dssp ECTTS-CCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEET-T-C
T ss_pred ecCCC-cceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCC-C-c
Confidence 66653 344555443 5566666666532 333333221 11 666666553 555555433337899999954 2 3
Q ss_pred ccc-cccccCCCCCcEEEEeCCCCC-----CccccccCCCCCCcEEEecCccCcCCC-ccCCCCCCCcEEeccCCcCCCc
Q 009053 216 ESL-PSSLSMFKSLTSLEIIYCPKL-----KRLPDELGNLKALEELRVEGTAIRRPP-ESLGQLSSLQILSLSDNSNLER 288 (545)
Q Consensus 216 ~~l-p~~l~~l~~L~~L~Ls~c~~~-----~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~~~~~ 288 (545)
..+ ...+.++++|+.+.+.++... ..-+..|.++++|+.+.+.+ .++.++ ..+.++++|+.+.|..+ +..
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~--l~~ 336 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN--VTQ 336 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT--CCE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc--ccE
Confidence 444 456889999999999986653 23346789999999999994 477664 57788999999999765 555
Q ss_pred ch-hhhcCCCCCCEEeccCCcCccccCC-----CCCCccEEecc
Q 009053 289 AP-ESIRHLSKLTSLFISDCKMLQTLPE-----LPCNLHDLDAS 326 (545)
Q Consensus 289 lp-~~l~~l~~L~~L~L~~c~~l~~ip~-----~~~sL~~L~l~ 326 (545)
+. ..+.++ +|+.+++.++... .+++ .+.+++.|++-
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEEC
T ss_pred EcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeC
Confidence 54 567788 9999999987543 3322 33456666554
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.99 E-value=2.3e-09 Score=97.03 Aligned_cols=102 Identities=21% Similarity=0.338 Sum_probs=81.6
Q ss_pred CCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCcc-CCCCCCCcEEeccC
Q 009053 204 LDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPES-LGQLSSLQILSLSD 282 (545)
Q Consensus 204 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~ 282 (545)
-+.++++++. ++.+|..+. ++|+.|++++|...+..|..++++++|++|++++|.++.+|.. +..+++|+.|+|++
T Consensus 14 ~~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 3678888754 467777654 7889999999888777788888899999999999999888765 47888999999998
Q ss_pred CcCCCcchhh-hcCCCCCCEEeccCCcC
Q 009053 283 NSNLERAPES-IRHLSKLTSLFISDCKM 309 (545)
Q Consensus 283 n~~~~~lp~~-l~~l~~L~~L~L~~c~~ 309 (545)
| .++.+|.. +..+++|+.|+|++|+.
T Consensus 91 N-~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 91 N-HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp S-CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred C-ccceeCHHHhccccCCCEEEeCCCCc
Confidence 8 77777754 77888888888888763
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.98 E-value=5e-12 Score=117.30 Aligned_cols=118 Identities=23% Similarity=0.251 Sum_probs=93.4
Q ss_pred ccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCc
Q 009053 181 IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGT 260 (545)
Q Consensus 181 L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n 260 (545)
|+.|++++|.+.++| .+..+++|+.|++++|... .+|..+..+++|+.|++++|...+ +| .++.+++|+.|++++|
T Consensus 50 L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 50 CKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNN 125 (198)
T ss_dssp CSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEE
T ss_pred CCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCC
Confidence 677777777777777 7888889999999987654 677777777899999999986654 55 5788899999999999
Q ss_pred cCcCCCc--cCCCCCCCcEEeccCCcCCC-cchh----------hhcCCCCCCEEe
Q 009053 261 AIRRPPE--SLGQLSSLQILSLSDNSNLE-RAPE----------SIRHLSKLTSLF 303 (545)
Q Consensus 261 ~l~~lp~--~l~~l~~L~~L~L~~n~~~~-~lp~----------~l~~l~~L~~L~ 303 (545)
.++.++. .+..+++|+.|++++| .+. .+|. .+..+++|+.|+
T Consensus 126 ~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 126 KITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9987754 7888999999999999 444 3332 267888888887
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.94 E-value=1e-07 Score=97.98 Aligned_cols=285 Identities=14% Similarity=0.129 Sum_probs=158.6
Q ss_pred cccChhhhhCCCCCcEEEeeCCCCcccc-CCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCcccc-c
Q 009053 8 IQINPYTFSKMTELRFLKFYGSENKCMV-SSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLW-D 81 (545)
Q Consensus 8 ~~~~~~~f~~m~~Lr~L~l~~~~~~~l~-~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~-~ 81 (545)
..|...||.++++|+.+.|..+ ...+. ..|.+++ +|+.+.+... ++.+ ...+.+|+.+.++.+ ++.+. .
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~--~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCS--KLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCT--TCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred eEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCC--CCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 4578889999999999999653 34454 5677776 8888888654 5555 445667777666544 33322 3
Q ss_pred cccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCcccc-ccccCCCCCCEEEecCCCCCCccCCcc--CCcc
Q 009053 82 DVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETH-SSIQYLNKLEVLDLDRCESLRTLPTSI--QSKY 158 (545)
Q Consensus 82 ~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~-~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~ 158 (545)
.+..+..++........ ......|..+++|+.+.+... ...++ ..+..+.+|+.+++..+ +..++... ++..
T Consensus 135 aF~~~~~~~~~~~~~~~-~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGVT-VIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECIL 209 (394)
T ss_dssp TTTTCCCSEEECCTTCC-EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTT
T ss_pred eeecccccccccCcccc-ccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccc
Confidence 34444333332222211 111124777788888888643 23333 34566777887777542 44444433 5666
Q ss_pred ccEEeecCCCCCCCCCccc--cCCccEEEcccccCcccC-ccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeC
Q 009053 159 LKRLVLRGCSNLKNFPEIS--SSGIHRLDLTHVGIKELP-SSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIY 235 (545)
Q Consensus 159 L~~L~L~~c~~l~~~p~~~--~~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~ 235 (545)
|+.+.+..... .+.... ...|+.+.+... +..+. ..+..+..|+.+.+..+. ...-...+..+..++.+....
T Consensus 210 L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 210 LENMEFPNSLY--YLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp CCBCCCCTTCC--EECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECS
T ss_pred cceeecCCCce--EeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCc
Confidence 66665544221 111111 111555555432 22232 235567777777776532 222233455666777666644
Q ss_pred CCCCCccccccCCCCCCcEEEecCccCcCC-CccCCCCCCCcEEeccCCcCCCcch-hhhcCCCCCCEEeccCCcCcccc
Q 009053 236 CPKLKRLPDELGNLKALEELRVEGTAIRRP-PESLGQLSSLQILSLSDNSNLERAP-ESIRHLSKLTSLFISDCKMLQTL 313 (545)
Q Consensus 236 c~~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~c~~l~~i 313 (545)
.. .....+..+.+|+.+.+..+ ++.+ ..++.++.+|+.++|..+ ++.+. ..+.++.+|+.+.+..+ ++.|
T Consensus 286 ~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I 357 (394)
T 4fs7_A 286 VI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKI 357 (394)
T ss_dssp SE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEE
T ss_pred ee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEe
Confidence 21 11234566777777777654 4444 345667778888877643 55443 45667777777777543 4444
Q ss_pred C
Q 009053 314 P 314 (545)
Q Consensus 314 p 314 (545)
+
T Consensus 358 ~ 358 (394)
T 4fs7_A 358 G 358 (394)
T ss_dssp C
T ss_pred h
Confidence 4
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.91 E-value=7.1e-09 Score=93.39 Aligned_cols=106 Identities=19% Similarity=0.182 Sum_probs=81.1
Q ss_pred ccEEeecCCCCCCCCCccccCCccEEEcccccCccc-CccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCC
Q 009053 159 LKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKEL-PSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCP 237 (545)
Q Consensus 159 L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~ 237 (545)
.+.+++++ ..++.+|......++.|++++|.++++ |..+..+++|+.|+|++|...+..+..+..+++|+.|++++|.
T Consensus 11 ~~~l~~s~-n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSG-KSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTT-SCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCC-CCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 34555555 234455544334488888888888888 5568899999999999987665555556899999999999998
Q ss_pred CCCccccccCCCCCCcEEEecCccCcCC
Q 009053 238 KLKRLPDELGNLKALEELRVEGTAIRRP 265 (545)
Q Consensus 238 ~~~~lp~~l~~l~~L~~L~L~~n~l~~l 265 (545)
..+..+..+..+++|+.|++++|.+.-.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 7766666799999999999999987633
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.86 E-value=1.3e-07 Score=97.04 Aligned_cols=281 Identities=12% Similarity=0.116 Sum_probs=173.2
Q ss_pred cccChhhhhCCCCCcEEEeeCCCCcccc-CCcCCCCCCCccEEEeCCCCCCcc---cccccCccEEEcCCCCCccccccc
Q 009053 8 IQINPYTFSKMTELRFLKFYGSENKCMV-SSLEGVPFTEVRYFEWHQYPLKTL---DIHAENLVSLKMPGSKVKQLWDDV 83 (545)
Q Consensus 8 ~~~~~~~f~~m~~Lr~L~l~~~~~~~l~-~~l~~l~~~~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~~~l~~l~~~~ 83 (545)
..|...||.++++|+.+++.++ ...++ ..+..+. .|+.+.+... ++.+ .|.-..+....+......--...+
T Consensus 83 ~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~--~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF 158 (394)
T 4fs7_A 83 REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCY--ALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGVTVIGDEAF 158 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT--TCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTCCEECTTTT
T ss_pred cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccc--cchhhcccCc-eeeecceeeecccccccccCccccccchhhh
Confidence 4578899999999999999764 33444 4566665 7776655432 3333 333333444444333222223457
Q ss_pred cCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCcccc-ccccCCCCCCEEEecCCCCCCccCCcc-CCccccE
Q 009053 84 QNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETH-SSIQYLNKLEVLDLDRCESLRTLPTSI-QSKYLKR 161 (545)
Q Consensus 84 ~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~-~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~ 161 (545)
..+.+|+.+.+.++........|..+++|+.+.+..+ +..+. ..+..+..|+.+.+... ...+.... ...+|+.
T Consensus 159 ~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 159 ATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKN 234 (394)
T ss_dssp TTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCE
T ss_pred cccCCCcEEecCCccceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCce
Confidence 8888999998876532222224778888888888653 33333 34566777777766542 22333322 5567777
Q ss_pred EeecCCCCCCCCCcccc---CCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCC
Q 009053 162 LVLRGCSNLKNFPEISS---SGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPK 238 (545)
Q Consensus 162 L~L~~c~~l~~~p~~~~---~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~ 238 (545)
+.+... +..+..... ..++.+.+..+...--...+..+..++.+.+.... .....+..+.+|+.+.+..+
T Consensus 235 i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-- 307 (394)
T 4fs7_A 235 IIIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-- 307 (394)
T ss_dssp EEECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT--
T ss_pred EEECCC--ceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccccccccccc--
Confidence 776542 222221111 11677776655433233456778888888776532 11234667889999988653
Q ss_pred CCcc-ccccCCCCCCcEEEecCccCcCC-CccCCCCCCCcEEeccCCcCCCcch-hhhcCCCCCCEEeccC
Q 009053 239 LKRL-PDELGNLKALEELRVEGTAIRRP-PESLGQLSSLQILSLSDNSNLERAP-ESIRHLSKLTSLFISD 306 (545)
Q Consensus 239 ~~~l-p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~ 306 (545)
+..+ ...|.++.+|+.+++..+ ++.+ ..++.++++|+.+++..+ +..+. ..+.++++|+.+++..
T Consensus 308 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 308 VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 3344 356888999999999754 6655 457788999999999766 55554 4678888999988864
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.80 E-value=1.5e-08 Score=102.11 Aligned_cols=103 Identities=23% Similarity=0.126 Sum_probs=83.0
Q ss_pred EEEcccc-cCcccCccccCCCCCCEEEecC-CCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCc
Q 009053 183 RLDLTHV-GIKELPSSIDRLSKLDTLKIHD-CTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGT 260 (545)
Q Consensus 183 ~L~l~~~-~i~~lp~~~~~l~~L~~L~L~~-~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n 260 (545)
.++.+++ .++++|. +..+++|+.|+|++ |...+..+..+..+++|+.|+|++|...+..|..|+++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566776 7888888 88899999999987 5544444467889999999999999887777888899999999999999
Q ss_pred cCcCCCccCCCCCCCcEEeccCCcCCC
Q 009053 261 AIRRPPESLGQLSSLQILSLSDNSNLE 287 (545)
Q Consensus 261 ~l~~lp~~l~~l~~L~~L~L~~n~~~~ 287 (545)
.++.+|..+.....|+.|+|.+| .+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N-~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGN-PLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSS-CCC
T ss_pred ccceeCHHHcccCCceEEEeeCC-Ccc
Confidence 99988776554445999999998 554
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.75 E-value=2.1e-06 Score=88.09 Aligned_cols=285 Identities=11% Similarity=0.159 Sum_probs=169.8
Q ss_pred cccChhhhhCCC-CCcEEEeeCCCCcccc-CCcCCCCCCCccEEEeCCCC---CCcc----cccccCccEEEcCCCCCcc
Q 009053 8 IQINPYTFSKMT-ELRFLKFYGSENKCMV-SSLEGVPFTEVRYFEWHQYP---LKTL----DIHAENLVSLKMPGSKVKQ 78 (545)
Q Consensus 8 ~~~~~~~f~~m~-~Lr~L~l~~~~~~~l~-~~l~~l~~~~Lr~L~l~~~~---l~~l----~~~~~~L~~L~L~~~~l~~ 78 (545)
..|...||.+++ .|+.+.|..+ ...+. ..|.++. +|+.+.+..+. ++.+ ...+.+|+.+.++.+ ++.
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~--~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCT--SLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCT--TCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCc--cCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 457889999985 6999999653 34454 5677886 99999998763 5555 445678888877654 454
Q ss_pred cc-ccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCcc--C
Q 009053 79 LW-DDVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI--Q 155 (545)
Q Consensus 79 l~-~~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~ 155 (545)
+. ..+..+.+|+.+.+..+.....-..+..+.+|+.+.+.. .+..+........+|+.+.+... ...+.... .
T Consensus 128 I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~ 203 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSE 203 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCCCSEEEECTT--CCEECTTTTTT
T ss_pred ehhhhhhhhcccccccccceeeeecccceecccccccccccc--eeeEeccccccccceeEEEECCc--ccccccchhhh
Confidence 44 456888999999997543222222477889999998875 35555544444567888887642 33332222 5
Q ss_pred CccccEEeecCCCCCCCCCcccc----------------CCccEEEcccccCcccC-ccccCCCCCCEEEecCCCCCccc
Q 009053 156 SKYLKRLVLRGCSNLKNFPEISS----------------SGIHRLDLTHVGIKELP-SSIDRLSKLDTLKIHDCTSLESL 218 (545)
Q Consensus 156 l~~L~~L~L~~c~~l~~~p~~~~----------------~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~l~~l 218 (545)
+.+++......... ........ ..+..+.+. +.+..+. ..+..+..|+.+.+.... ...-
T Consensus 204 c~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~ 280 (394)
T 4gt6_A 204 CFALSTITSDSESY-PAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSV-VSIG 280 (394)
T ss_dssp CTTCCEEEECCSSS-CBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTC-CEEC
T ss_pred ccccceeccccccc-ccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEeccccc-ceec
Confidence 55666555443211 11110000 001111111 1111121 235567778888776532 2222
Q ss_pred cccccCCCCCcEEEEeCCCCCCccc-cccCCCCCCcEEEecCccCcCC-CccCCCCCCCcEEeccCCcCCCcch-hhhcC
Q 009053 219 PSSLSMFKSLTSLEIIYCPKLKRLP-DELGNLKALEELRVEGTAIRRP-PESLGQLSSLQILSLSDNSNLERAP-ESIRH 295 (545)
Q Consensus 219 p~~l~~l~~L~~L~Ls~c~~~~~lp-~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~ 295 (545)
...+.++++|+.+.+.. .+..++ ..|.++.+|+.+.+..+ ++.+ ..++.++.+|+.+.|..+ ++.+. ..+.+
T Consensus 281 ~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~ 355 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSN 355 (394)
T ss_dssp TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTT
T ss_pred CcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhC
Confidence 33456777888877753 233333 45777788888888653 4444 346677788888888654 44443 45777
Q ss_pred CCCCCEEeccCCc
Q 009053 296 LSKLTSLFISDCK 308 (545)
Q Consensus 296 l~~L~~L~L~~c~ 308 (545)
|++|+.+++.++.
T Consensus 356 C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 356 CTALNNIEYSGSR 368 (394)
T ss_dssp CTTCCEEEESSCH
T ss_pred CCCCCEEEECCce
Confidence 8888888877653
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.64 E-value=6.7e-08 Score=97.38 Aligned_cols=103 Identities=23% Similarity=0.160 Sum_probs=84.1
Q ss_pred EEEecCCCCCccccccccCCCCCcEEEEeC-CCCCCccccccCCCCCCcEEEecCccCcCCC-ccCCCCCCCcEEeccCC
Q 009053 206 TLKIHDCTSLESLPSSLSMFKSLTSLEIIY-CPKLKRLPDELGNLKALEELRVEGTAIRRPP-ESLGQLSSLQILSLSDN 283 (545)
Q Consensus 206 ~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~-c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n 283 (545)
.++.++++.+..+|. +..+++|+.|+|++ |...+..+..++++++|+.|+|++|.++.++ ..+..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 457777646777999 99999999999997 6665555578999999999999999999775 56789999999999999
Q ss_pred cCCCcchhhhcCCCCCCEEeccCCcCc
Q 009053 284 SNLERAPESIRHLSKLTSLFISDCKML 310 (545)
Q Consensus 284 ~~~~~lp~~l~~l~~L~~L~L~~c~~l 310 (545)
.++.+|..+.....|+.|+|.+|+..
T Consensus 91 -~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 -ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp -CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred -ccceeCHHHcccCCceEEEeeCCCcc
Confidence 78888765544444999999988754
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.55 E-value=4.4e-09 Score=107.28 Aligned_cols=108 Identities=16% Similarity=0.106 Sum_probs=64.7
Q ss_pred CCCCCEEEecCCCCCccccccc-----cCCCCCcEEEEeCCCCCC----ccccccCCCCCCcEEEecCccCcC-----CC
Q 009053 201 LSKLDTLKIHDCTSLESLPSSL-----SMFKSLTSLEIIYCPKLK----RLPDELGNLKALEELRVEGTAIRR-----PP 266 (545)
Q Consensus 201 l~~L~~L~L~~~~~l~~lp~~l-----~~l~~L~~L~Ls~c~~~~----~lp~~l~~l~~L~~L~L~~n~l~~-----lp 266 (545)
+++|+.|+|++|.........+ ...++|++|++++|.... .++..+..+++|++|++++|.++. ++
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~ 204 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA 204 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence 3456666666665433222221 235667777777765432 234445566777777777777652 24
Q ss_pred ccCCCCCCCcEEeccCCcCCC-----cchhhhcCCCCCCEEeccCCcC
Q 009053 267 ESLGQLSSLQILSLSDNSNLE-----RAPESIRHLSKLTSLFISDCKM 309 (545)
Q Consensus 267 ~~l~~l~~L~~L~L~~n~~~~-----~lp~~l~~l~~L~~L~L~~c~~ 309 (545)
..+...++|+.|+|++| .++ .++..+...++|++|+|++|..
T Consensus 205 ~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 45556667888888877 555 2444556667788888887764
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.52 E-value=6.7e-08 Score=97.85 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=17.9
Q ss_pred CCCCcEEeccCCcCCCc-----chhhhcCCCCCCEEeccCCc
Q 009053 272 LSSLQILSLSDNSNLER-----APESIRHLSKLTSLFISDCK 308 (545)
Q Consensus 272 l~~L~~L~L~~n~~~~~-----lp~~l~~l~~L~~L~L~~c~ 308 (545)
+++|+.|+|+.| .++. ++..+..+++|+.|+|++|.
T Consensus 278 ~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 278 LPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 445555555555 3332 23333445556666665554
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.51 E-value=5.5e-09 Score=106.53 Aligned_cols=86 Identities=22% Similarity=0.215 Sum_probs=51.1
Q ss_pred CCCCCEEEecCCCCCc----cccccccCCCCCcEEEEeCCCCCC----ccccccCCCCCCcEEEecCccCcC-----CCc
Q 009053 201 LSKLDTLKIHDCTSLE----SLPSSLSMFKSLTSLEIIYCPKLK----RLPDELGNLKALEELRVEGTAIRR-----PPE 267 (545)
Q Consensus 201 l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~Ls~c~~~~----~lp~~l~~l~~L~~L~L~~n~l~~-----lp~ 267 (545)
.++|+.|+|++|.... .++..+..+++|++|++++|.... .+++.+...++|++|++++|.++. +..
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 4556666666654422 233334556666666666665432 234455566677777777777762 234
Q ss_pred cCCCCCCCcEEeccCCcCCC
Q 009053 268 SLGQLSSLQILSLSDNSNLE 287 (545)
Q Consensus 268 ~l~~l~~L~~L~L~~n~~~~ 287 (545)
.+...++|+.|+|++| .++
T Consensus 234 ~L~~~~~L~~L~Ls~N-~i~ 252 (372)
T 3un9_A 234 AAREHPSLELLHLYFN-ELS 252 (372)
T ss_dssp HHHHCSSCCEEECTTS-SCC
T ss_pred HHHhCCCCCEEeccCC-CCC
Confidence 4455678888888888 555
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.40 E-value=3.1e-05 Score=79.25 Aligned_cols=282 Identities=13% Similarity=0.144 Sum_probs=162.4
Q ss_pred cccChhhhhCCCCCcEEEeeCCC---Ccccc-CCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCccc
Q 009053 8 IQINPYTFSKMTELRFLKFYGSE---NKCMV-SSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQL 79 (545)
Q Consensus 8 ~~~~~~~f~~m~~Lr~L~l~~~~---~~~l~-~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l 79 (545)
..|...||.++++|+.+.+..+. ...+. ..|..+. +|+.+.+... ++.+ ...+.+|+.+.++.+ ++.+
T Consensus 76 t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~--~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I 151 (394)
T 4gt6_A 76 TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCS--ELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSV 151 (394)
T ss_dssp CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCT--TCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcc--cceeeccCCc-cceehhhhhhhhcccccccccce-eeee
Confidence 45788999999999999997642 23444 3455554 7776665433 4444 567788999999764 3433
Q ss_pred c-ccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCcc----
Q 009053 80 W-DDVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI---- 154 (545)
Q Consensus 80 ~-~~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~---- 154 (545)
. ..+..+.+|+.+.+..+-.......|. ..+|+.+.+... ........+..+.+++........ ...+....
T Consensus 152 ~~~~F~~c~~L~~i~~~~~~~~I~~~aF~-~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~-~~~~~~~~~~~~ 228 (394)
T 4gt6_A 152 ADGMFSYCYSLHTVTLPDSVTAIEERAFT-GTALTQIHIPAK-VTRIGTNAFSECFALSTITSDSES-YPAIDNVLYEKS 228 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTCCEECTTTTT-TCCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSS-SCBSSSCEEEEC
T ss_pred cccceecccccccccccceeeEecccccc-ccceeEEEECCc-ccccccchhhhccccceecccccc-cccccceeeccc
Confidence 3 456888999999987652221112343 357888888753 222223455667777777654421 11111111
Q ss_pred -----------CCccccEEeecCCCCCCCCCcc-ccC--CccEEEcccccCcccCccccCCCCCCEEEecCCCCCcccc-
Q 009053 155 -----------QSKYLKRLVLRGCSNLKNFPEI-SSS--GIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLP- 219 (545)
Q Consensus 155 -----------~l~~L~~L~L~~c~~l~~~p~~-~~~--~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp- 219 (545)
....+..+.+.. .+..+... ... .|+.+.+..+-..--...+.+++.|+.+.+.. .+..++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~ip~--~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~ 304 (394)
T 4gt6_A 229 ANGDYALIRYPSQREDPAFKIPN--GVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS--RITELPE 304 (394)
T ss_dssp TTSCEEEEECCTTCCCSEEECCT--TEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECT
T ss_pred ccccccccccccccccceEEcCC--cceEcccceeeecccccEEecccccceecCcccccccccccccCCC--cccccCc
Confidence 011111221111 01111110 111 16666664432221223467788999999864 344444
Q ss_pred ccccCCCCCcEEEEeCCCCCCcc-ccccCCCCCCcEEEecCccCcCCC-ccCCCCCCCcEEeccCCcCCCcchhhhcCCC
Q 009053 220 SSLSMFKSLTSLEIIYCPKLKRL-PDELGNLKALEELRVEGTAIRRPP-ESLGQLSSLQILSLSDNSNLERAPESIRHLS 297 (545)
Q Consensus 220 ~~l~~l~~L~~L~Ls~c~~~~~l-p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~ 297 (545)
..+.++.+|+.+.+..+ +..+ ...|.++.+|+.+.+..+ ++.+. .++.++++|+.+++.++. . . ...+..+.
T Consensus 305 ~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~-~-~-~~~~~~~~ 378 (394)
T 4gt6_A 305 SVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR-S-Q-WNAISTDS 378 (394)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH-H-H-HHTCBCCC
T ss_pred eeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce-e-e-hhhhhccC
Confidence 45778899999998653 3344 357889999999999754 66664 578899999999998872 1 1 23456667
Q ss_pred CCCEEeccC
Q 009053 298 KLTSLFISD 306 (545)
Q Consensus 298 ~L~~L~L~~ 306 (545)
+|+.+.+..
T Consensus 379 ~L~~i~i~~ 387 (394)
T 4gt6_A 379 GLQNLPVAP 387 (394)
T ss_dssp CC-------
T ss_pred CCCEEEeCC
Confidence 777776654
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.33 E-value=6.8e-05 Score=76.14 Aligned_cols=275 Identities=11% Similarity=0.101 Sum_probs=122.9
Q ss_pred hhhhCCCCCcEEEeeCCCCcccc-CCcCCCCCCCccEEEeCCCCCCcc---cccccCccEEEcCCCCCccccccccCCCC
Q 009053 13 YTFSKMTELRFLKFYGSENKCMV-SSLEGVPFTEVRYFEWHQYPLKTL---DIHAENLVSLKMPGSKVKQLWDDVQNLVN 88 (545)
Q Consensus 13 ~~f~~m~~Lr~L~l~~~~~~~l~-~~l~~l~~~~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~~~l~~l~~~~~~l~~ 88 (545)
.+|....+|+.+.|.. ....++ ..|.++. +|+.+.+... ++.+ .|.-.+|..+.+.. +++.+....-...+
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~--~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~-~l~~I~~~aF~~~~ 114 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGEANFNSCY--NMTKVTVAST-VTSIGDGAFADTKLQSYTGME-RVKKFGDYVFQGTD 114 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECTTTTTTCT--TCCEEEECTT-CCEECTTTTTTCCCCEEEECT-TCCEECTTTTTTCC
T ss_pred cccccccCCEEEEeCC-CccChHHHHhhCCC--CCCEEEeCCc-ceEechhhhcCCCCceEECCc-eeeEeccceeccCC
Confidence 3466667777777743 233444 3466665 7777777543 4444 33333566666653 34544433322336
Q ss_pred ccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccc-cccccCCCCCCEEEecCCCCCCccCCcc-------------
Q 009053 89 LKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTET-HSSIQYLNKLEVLDLDRCESLRTLPTSI------------- 154 (545)
Q Consensus 89 L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~-~~~i~~l~~L~~L~L~~c~~l~~lp~~~------------- 154 (545)
|+.+++..+-....-..+... +|+.+.+... +..+ ...+..+..++.+.+.............
T Consensus 115 L~~i~lp~~~~~i~~~~F~~~-~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (379)
T 4h09_A 115 LDDFEFPGATTEIGNYIFYNS-SVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP 191 (379)
T ss_dssp CSEEECCTTCCEECTTTTTTC-CCCEEEECTT--CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred cccccCCCccccccccccccc-eeeeeeccce--eeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence 777777653211111123332 4555555432 2222 2334455666666655432211110000
Q ss_pred CCccccEEeecCCCCCCCCCccc---cCCccEEEcccccCcccC-ccccCCCCCCEEEecCCCCCccc-cccccCCCCCc
Q 009053 155 QSKYLKRLVLRGCSNLKNFPEIS---SSGIHRLDLTHVGIKELP-SSIDRLSKLDTLKIHDCTSLESL-PSSLSMFKSLT 229 (545)
Q Consensus 155 ~l~~L~~L~L~~c~~l~~~p~~~---~~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~ 229 (545)
....+..+.+.... ..+.... ...++.+.+..+ +..+. ..+..+..|+.+.+..+ +..+ ...+..+.+|+
T Consensus 192 ~~~~~~~~~~~~~~--~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 192 AAKTGTEFTIPSTV--KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALK 266 (379)
T ss_dssp TTCCCSEEECCTTC--CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCC
T ss_pred ccccccccccccce--eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhc
Confidence 11122222221110 0000000 000333333222 22222 23445566666666542 2222 22345556666
Q ss_pred EEEEeCCCCCCccc-cccCCCCCCcEEEecCccCcCCC-ccCCCCCCCcEEeccCCcCCCcch-hhhcCCCCCCEEec
Q 009053 230 SLEIIYCPKLKRLP-DELGNLKALEELRVEGTAIRRPP-ESLGQLSSLQILSLSDNSNLERAP-ESIRHLSKLTSLFI 304 (545)
Q Consensus 230 ~L~Ls~c~~~~~lp-~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L 304 (545)
.+.+... +..++ ..+.++.+|+.+.+.++.++.++ ..+.++.+|+.+.|..+ ++.|. ..+.++++|+.+.+
T Consensus 267 ~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 267 TLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred ccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEE
Confidence 6666431 22222 34556666666666666665553 34556666666666543 34333 23455555555544
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.29 E-value=2.7e-07 Score=93.35 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=76.0
Q ss_pred cccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCcccccccc--CCCCCCEEEecCCCC-------CCccCC
Q 009053 82 DVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQ--YLNKLEVLDLDRCES-------LRTLPT 152 (545)
Q Consensus 82 ~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~--~l~~L~~L~L~~c~~-------l~~lp~ 152 (545)
.+..+|+|+.|+|+++... .++.+ ..++|++|+|..|.........+. .+++|+.|+|+.+.. +..+..
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 3455667777777665322 22333 256777777766554333222332 566777776643111 000100
Q ss_pred cc---CCccccEEeecCCCCCCCCCccccCCccEEEcccccCcc-cCccc---cCCCCCCEEEecCCCCCcc----cccc
Q 009053 153 SI---QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKE-LPSSI---DRLSKLDTLKIHDCTSLES----LPSS 221 (545)
Q Consensus 153 ~~---~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~-lp~~~---~~l~~L~~L~L~~~~~l~~----lp~~ 221 (545)
.+ .+++ |+.|.+.+|.+.. .+..+ ..+++|+.|+|+.|..... ++..
T Consensus 245 ~l~~~~~p~----------------------Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~ 302 (362)
T 2ra8_A 245 LFSKDRFPN----------------------LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH 302 (362)
T ss_dssp GSCTTTCTT----------------------CCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTT
T ss_pred HHhcCCCCC----------------------cCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhh
Confidence 11 2344 4555554444432 11111 2466788888877654432 3444
Q ss_pred ccCCCCCcEEEEeCCCCCCccccccCC-CCCCcEEEecCcc
Q 009053 222 LSMFKSLTSLEIIYCPKLKRLPDELGN-LKALEELRVEGTA 261 (545)
Q Consensus 222 l~~l~~L~~L~Ls~c~~~~~lp~~l~~-l~~L~~L~L~~n~ 261 (545)
+..+++|+.|++++|......-..+.. + ...++++++.
T Consensus 303 L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 303 VDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 456678888888777654332222221 1 3456666654
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.15 E-value=0.00034 Score=70.88 Aligned_cols=248 Identities=13% Similarity=0.142 Sum_probs=146.0
Q ss_pred CCccEEEeCCCCCCcc----cccccCccEEEcCCCCCccccc-cccCCCCccEEEecCCCCCCCCCC--CCCCCCccEEE
Q 009053 44 TEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLWD-DVQNLVNLKKIDLWYSKLLTKLPD--LSLAQNLEILD 116 (545)
Q Consensus 44 ~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~LdLs~~~~~~~~p~--l~~l~~L~~L~ 116 (545)
.+|+.+.+.. .++.+ ...+.+|+++.++.+ ++.+.. .+.++ +|+.+.+..+ +..+++ |.. .+|+.+.
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~-~~L~~i~ 119 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQG-TDLDDFE 119 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTT-CCCSEEE
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceecc-CCccccc
Confidence 3788888864 35666 556789999999854 776653 45666 6888887643 333443 544 4799999
Q ss_pred eeCCCCCccccccccCCCCCCEEEecCCCCCCccCCcc--CCccccEEeecCCCCCCCCCc------------cc-c-CC
Q 009053 117 LGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI--QSKYLKRLVLRGCSNLKNFPE------------IS-S-SG 180 (545)
Q Consensus 117 L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~p~------------~~-~-~~ 180 (545)
+.+. +..+........+|+.+.+-. .+..+.... .+..++...+........... .. . ..
T Consensus 120 lp~~--~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (379)
T 4h09_A 120 FPGA--TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKT 195 (379)
T ss_dssp CCTT--CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCC
T ss_pred CCCc--cccccccccccceeeeeeccc--eeeccccchhcccccccccccccccceeecccceecccccceecccccccc
Confidence 9753 444444443445677776654 344444332 677777777665332111000 00 0 00
Q ss_pred ccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCcc-ccccCCCCCCcEEEecC
Q 009053 181 IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRL-PDELGNLKALEELRVEG 259 (545)
Q Consensus 181 L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~l-p~~l~~l~~L~~L~L~~ 259 (545)
+..+.+..+...-....+..+.+|+.+.+..+ ....-...+..+..|+.+.+..+ +..+ ...+.++.+|+.+.+..
T Consensus 196 ~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~ 272 (379)
T 4h09_A 196 GTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA 272 (379)
T ss_dssp CSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC
T ss_pred ccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc
Confidence 22222222211112234455677777777553 12222334567788888888653 3333 34567788888888865
Q ss_pred ccCcCCC-ccCCCCCCCcEEeccCCcCCCcch-hhhcCCCCCCEEeccC
Q 009053 260 TAIRRPP-ESLGQLSSLQILSLSDNSNLERAP-ESIRHLSKLTSLFISD 306 (545)
Q Consensus 260 n~l~~lp-~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~ 306 (545)
+ +..++ ..+..+++|+.+.+.++ .++.++ ..+.++.+|+.+.|..
T Consensus 273 ~-i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 273 K-VKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp C-CSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT
T ss_pred c-ceecccccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCc
Confidence 3 44443 45677888999988877 666665 4567788888888753
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=3e-06 Score=75.88 Aligned_cols=85 Identities=16% Similarity=0.243 Sum_probs=43.5
Q ss_pred CccEEEecCCCCCCC-CCCCCCCCCccEEEeeCCCCCcc-ccccccCC----CCCCEEEecCCCCCCcc--CCccCCccc
Q 009053 88 NLKKIDLWYSKLLTK-LPDLSLAQNLEILDLGGCSSLTE-THSSIQYL----NKLEVLDLDRCESLRTL--PTSIQSKYL 159 (545)
Q Consensus 88 ~L~~LdLs~~~~~~~-~p~l~~l~~L~~L~L~~c~~l~~-~~~~i~~l----~~L~~L~L~~c~~l~~l--p~~~~l~~L 159 (545)
+|+.||+++|.+... +..+..+++|++|+|++|..++. --..+..+ ++|++|+|++|..++.- .....+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 456666666553221 12245566666666666654442 11223332 35666666666655531 111156666
Q ss_pred cEEeecCCCCCCC
Q 009053 160 KRLVLRGCSNLKN 172 (545)
Q Consensus 160 ~~L~L~~c~~l~~ 172 (545)
+.|++++|+.+++
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 6666666665554
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=3.5e-06 Score=75.45 Aligned_cols=38 Identities=21% Similarity=0.360 Sum_probs=16.9
Q ss_pred CCcEEeccCCcCCC-cchhhhcCCCCCCEEeccCCcCcc
Q 009053 274 SLQILSLSDNSNLE-RAPESIRHLSKLTSLFISDCKMLQ 311 (545)
Q Consensus 274 ~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~c~~l~ 311 (545)
+|++|+|++|..++ .--..+.++++|++|+|++|+.++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 45555555554444 111223444555555555554433
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.88 E-value=4.3e-06 Score=76.11 Aligned_cols=112 Identities=15% Similarity=0.121 Sum_probs=67.6
Q ss_pred ccccCCCCCCEEEecCC-CCCc----cccccccCCCCCcEEEEeCCCCCCc----cccccCCCCCCcEEEecCccCcC--
Q 009053 196 SSIDRLSKLDTLKIHDC-TSLE----SLPSSLSMFKSLTSLEIIYCPKLKR----LPDELGNLKALEELRVEGTAIRR-- 264 (545)
Q Consensus 196 ~~~~~l~~L~~L~L~~~-~~l~----~lp~~l~~l~~L~~L~Ls~c~~~~~----lp~~l~~l~~L~~L~L~~n~l~~-- 264 (545)
..+...+.|+.|+|++| .... .+...+...++|++|+|++|..... +.+.+...++|++|++++|.+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34556777778888777 4332 2334455667777777777765432 33344455667777777776652
Q ss_pred ---CCccCCCCCCCcEEec--cCCcCCC-----cchhhhcCCCCCCEEeccCCc
Q 009053 265 ---PPESLGQLSSLQILSL--SDNSNLE-----RAPESIRHLSKLTSLFISDCK 308 (545)
Q Consensus 265 ---lp~~l~~l~~L~~L~L--~~n~~~~-----~lp~~l~~l~~L~~L~L~~c~ 308 (545)
+...+...++|+.|+| ++| .++ .+...+...++|++|+|++|.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 3445556667777777 566 454 244455556667777776654
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.52 E-value=2.4e-05 Score=71.12 Aligned_cols=43 Identities=9% Similarity=-0.006 Sum_probs=20.6
Q ss_pred hhhhCCCCCcEEEeeCC-CCc-----cccCCcCCCCCCCccEEEeCCCCCC
Q 009053 13 YTFSKMTELRFLKFYGS-ENK-----CMVSSLEGVPFTEVRYFEWHQYPLK 57 (545)
Q Consensus 13 ~~f~~m~~Lr~L~l~~~-~~~-----~l~~~l~~l~~~~Lr~L~l~~~~l~ 57 (545)
.++...++|+.|++++| ... .+...+...+ .|++|++++|.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~--~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT--YVKKFSIVGTRSN 78 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC--SCCEEECTTSCCC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCC--CcCEEECcCCCCC
Confidence 34555566666666554 222 1223334433 5555555555544
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.48 E-value=6.4e-05 Score=72.21 Aligned_cols=10 Identities=40% Similarity=0.408 Sum_probs=4.9
Q ss_pred CCcEEeccCC
Q 009053 274 SLQILSLSDN 283 (545)
Q Consensus 274 ~L~~L~L~~n 283 (545)
+|++|+|++|
T Consensus 221 ~L~~L~L~~N 230 (267)
T 3rw6_A 221 KLEELWLDGN 230 (267)
T ss_dssp CCSEEECTTS
T ss_pred CcceEEccCC
Confidence 4444555444
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.28 E-value=9.8e-05 Score=70.91 Aligned_cols=78 Identities=28% Similarity=0.331 Sum_probs=38.8
Q ss_pred cCCCCccEEEecCCCCCC--CCCC-CCCCCCccEEEeeCCCCCccccccccCCC--CCCEEEecCCCCCCccCCc-----
Q 009053 84 QNLVNLKKIDLWYSKLLT--KLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLN--KLEVLDLDRCESLRTLPTS----- 153 (545)
Q Consensus 84 ~~l~~L~~LdLs~~~~~~--~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~--~L~~L~L~~c~~l~~lp~~----- 153 (545)
.++++|+.|+|++|.+.. .+|+ +..+++|+.|+|++|..... ..+..+. +|++|+|++|.....+|..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 345566666666665544 2222 23556666666665543221 1222222 6666666666544444421
Q ss_pred --c-CCccccEEe
Q 009053 154 --I-QSKYLKRLV 163 (545)
Q Consensus 154 --~-~l~~L~~L~ 163 (545)
+ .+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 1 456666654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.69 E-value=0.0067 Score=55.06 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=37.7
Q ss_pred cCCCCCCEEEecCCCCCcc-----ccccccCCCCCcEEEEeCCCCCCc----cccccCCCCCCcEEEecCccCc-----C
Q 009053 199 DRLSKLDTLKIHDCTSLES-----LPSSLSMFKSLTSLEIIYCPKLKR----LPDELGNLKALEELRVEGTAIR-----R 264 (545)
Q Consensus 199 ~~l~~L~~L~L~~~~~l~~-----lp~~l~~l~~L~~L~Ls~c~~~~~----lp~~l~~l~~L~~L~L~~n~l~-----~ 264 (545)
.+-+.|+.|+|++++.++. +...+..-+.|+.|+|++|..... +.+.+..-+.|+.|+|+.|.|. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 3345666666665423321 233344445555565555544321 2222333344555555555544 1
Q ss_pred CCccCCCCCCCcEEeccC
Q 009053 265 PPESLGQLSSLQILSLSD 282 (545)
Q Consensus 265 lp~~l~~l~~L~~L~L~~ 282 (545)
+-..+..-+.|++|+|++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 222333334455555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.94 E-value=0.01 Score=53.86 Aligned_cols=85 Identities=20% Similarity=0.186 Sum_probs=54.2
Q ss_pred ccCCCCCcEEEEeCCCCCCc-----cccccCCCCCCcEEEecCccCc-----CCCccCCCCCCCcEEeccCCcCCC----
Q 009053 222 LSMFKSLTSLEIIYCPKLKR-----LPDELGNLKALEELRVEGTAIR-----RPPESLGQLSSLQILSLSDNSNLE---- 287 (545)
Q Consensus 222 l~~l~~L~~L~Ls~c~~~~~-----lp~~l~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~n~~~~---- 287 (545)
+.+-+.|++|+|+++..++. +-+.+..-..|+.|+|++|.+. .+...+..-+.|+.|+|++| .++
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHH
Confidence 34567788888877533332 3455666677888888888776 22334445567888888887 554
Q ss_pred -cchhhhcCCCCCCEEeccCC
Q 009053 288 -RAPESIRHLSKLTSLFISDC 307 (545)
Q Consensus 288 -~lp~~l~~l~~L~~L~L~~c 307 (545)
.+-..+..-..|+.|+|++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 34445666667777777754
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.34 E-value=0.059 Score=45.33 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=15.8
Q ss_pred cCccEEEcCCCCCcccccc-ccCCCCccEEEecCC
Q 009053 64 ENLVSLKMPGSKVKQLWDD-VQNLVNLKKIDLWYS 97 (545)
Q Consensus 64 ~~L~~L~L~~~~l~~l~~~-~~~l~~L~~LdLs~~ 97 (545)
.+|++|+|++|+|+.++.+ +..+++|+.|+|++|
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3444555555555444432 244444444444444
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.94 E-value=0.1 Score=43.88 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=32.7
Q ss_pred EEEecCccCc--CCCccCCCCCCCcEEeccCCcCCCcchh-hhcCCCCCCEEeccCCc
Q 009053 254 ELRVEGTAIR--RPPESLGQLSSLQILSLSDNSNLERAPE-SIRHLSKLTSLFISDCK 308 (545)
Q Consensus 254 ~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~lp~-~l~~l~~L~~L~L~~c~ 308 (545)
.++.+++.++ .+|..+ .++|+.|+|++| .++.+|. .+..+++|+.|+|.+|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 5566666666 666432 245777777777 6666654 34566777777777664
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=33.93 E-value=39 Score=26.25 Aligned_cols=46 Identities=9% Similarity=0.034 Sum_probs=33.9
Q ss_pred ccccChhhhhCCCCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCC
Q 009053 7 EIQINPYTFSKMTELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQY 54 (545)
Q Consensus 7 ~~~~~~~~f~~m~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~ 54 (545)
...|...+|.++++|+.+.|..+...--...|..+. +|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~v~~Ig~~aF~~C~--~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPNIGLLYDGMFSGCT--ALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTTSSCCCTTSSTTCT--TCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCchheEcHHHHhccC--CccEEEEcCC
Confidence 457889999999999999997642222235677776 8888888764
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.53 E-value=2e+02 Score=22.04 Aligned_cols=37 Identities=22% Similarity=0.033 Sum_probs=17.7
Q ss_pred ccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeC
Q 009053 83 VQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGG 119 (545)
Q Consensus 83 ~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~ 119 (545)
+..+.+|+.+.|-.+-....-..|..+.+|+.+.+.+
T Consensus 16 F~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPNIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCchheEcHHHHhccCCccEEEEcC
Confidence 4555555555555432211122355555555555554
Done!