Query 009054
Match_columns 545
No_of_seqs 227 out of 1779
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 19:51:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02835 oxidoreductase 100.0 4E-111 9E-116 898.7 61.8 515 24-540 23-537 (539)
2 PLN02991 oxidoreductase 100.0 1E-110 2E-115 890.9 61.6 519 21-541 19-537 (543)
3 PLN02354 copper ion binding / 100.0 3E-110 6E-115 893.6 60.0 528 14-542 11-546 (552)
4 PLN02792 oxidoreductase 100.0 1E-108 3E-113 876.2 60.2 514 26-540 12-529 (536)
5 PLN02168 copper ion binding / 100.0 2E-108 4E-113 875.7 60.0 513 24-536 20-543 (545)
6 PLN00044 multi-copper oxidase- 100.0 2E-108 4E-113 878.3 59.5 519 24-543 21-563 (596)
7 KOG1263 Multicopper oxidases [ 100.0 2E-100 5E-105 806.6 58.0 519 23-541 21-562 (563)
8 TIGR03389 laccase laccase, pla 100.0 4E-100 9E-105 821.3 57.9 496 29-534 2-539 (539)
9 PLN02604 oxidoreductase 100.0 4.4E-97 1E-101 799.4 59.5 503 20-539 14-566 (566)
10 PLN02191 L-ascorbate oxidase 100.0 4.7E-97 1E-101 797.2 58.2 497 26-540 19-567 (574)
11 TIGR03388 ascorbase L-ascorbat 100.0 1E-96 2E-101 794.4 56.3 488 30-535 1-539 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 5.4E-94 1.2E-98 771.0 54.0 476 31-518 9-535 (538)
13 TIGR01480 copper_res_A copper- 100.0 4.7E-80 1E-84 662.0 52.2 427 31-515 46-587 (587)
14 PRK10965 multicopper oxidase; 100.0 7.9E-80 1.7E-84 655.8 46.1 411 30-515 45-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 4.1E-78 8.9E-83 637.5 45.0 400 32-517 47-470 (471)
16 COG2132 SufI Putative multicop 100.0 7.8E-62 1.7E-66 516.1 41.5 412 32-516 34-450 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 1.6E-49 3.6E-54 398.6 27.4 264 25-301 22-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 1.3E-36 2.7E-41 261.1 12.2 115 36-150 1-116 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 3.1E-30 6.7E-35 230.4 10.8 108 409-516 29-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 2.4E-26 5.1E-31 209.9 14.5 139 162-300 1-159 (159)
21 TIGR03095 rusti_cyanin rusticy 99.8 1.2E-18 2.7E-23 155.2 11.7 101 46-148 38-148 (148)
22 TIGR02376 Cu_nitrite_red nitri 99.7 8.9E-15 1.9E-19 147.4 24.3 243 192-516 47-297 (311)
23 TIGR01480 copper_res_A copper- 99.7 3.5E-16 7.5E-21 169.1 11.7 100 47-148 483-587 (587)
24 TIGR03096 nitroso_cyanin nitro 99.5 7.8E-13 1.7E-17 113.9 12.5 96 24-134 18-121 (135)
25 PRK10965 multicopper oxidase; 99.3 4.1E-10 8.9E-15 121.2 23.7 248 31-283 180-509 (523)
26 TIGR03389 laccase laccase, pla 99.2 1.2E-09 2.5E-14 118.9 20.0 239 193-500 23-264 (539)
27 PRK10883 FtsI repressor; Provi 99.2 1.2E-09 2.6E-14 116.5 18.1 234 32-283 181-454 (471)
28 PLN02835 oxidoreductase 99.1 4.5E-09 9.7E-14 113.6 20.6 218 193-497 49-276 (539)
29 PLN02354 copper ion binding / 99.0 1.1E-08 2.5E-13 110.7 19.4 232 193-499 47-283 (552)
30 PLN02168 copper ion binding / 99.0 2.1E-08 4.6E-13 108.2 20.0 218 193-490 46-267 (545)
31 PLN02991 oxidoreductase 99.0 2.4E-08 5.1E-13 107.7 19.0 219 193-496 48-276 (543)
32 PLN02792 oxidoreductase 99.0 3.4E-08 7.5E-13 106.5 19.5 228 193-497 36-267 (536)
33 COG2132 SufI Putative multicop 99.0 1.6E-08 3.4E-13 108.1 16.5 230 46-284 186-436 (451)
34 PLN02604 oxidoreductase 99.0 3.9E-09 8.4E-14 115.2 11.9 89 416-518 57-146 (566)
35 TIGR03390 ascorbOXfungal L-asc 98.9 7.4E-08 1.6E-12 104.6 20.6 236 193-497 28-280 (538)
36 TIGR03388 ascorbase L-ascorbat 98.9 2.7E-08 5.8E-13 108.3 16.4 221 61-283 203-510 (541)
37 PLN00044 multi-copper oxidase- 98.9 1.4E-07 3.1E-12 102.4 19.7 231 193-495 49-291 (596)
38 PF07731 Cu-oxidase_2: Multico 98.8 4.3E-09 9.4E-14 93.6 5.6 89 60-149 33-136 (138)
39 PLN02191 L-ascorbate oxidase 98.6 1.4E-06 3E-11 95.2 19.2 250 192-497 42-301 (574)
40 PF07732 Cu-oxidase_3: Multico 98.6 5.5E-08 1.2E-12 83.6 5.9 90 414-517 26-116 (117)
41 PRK02710 plastocyanin; Provisi 98.6 7.5E-07 1.6E-11 76.9 12.1 74 60-148 46-119 (119)
42 PF13473 Cupredoxin_1: Cupredo 98.5 2.2E-07 4.9E-12 78.3 6.8 70 61-147 35-104 (104)
43 KOG1263 Multicopper oxidases [ 98.4 2.6E-05 5.6E-10 84.2 20.0 228 193-499 48-286 (563)
44 TIGR02656 cyanin_plasto plasto 98.3 3.5E-06 7.5E-11 70.3 8.9 82 59-148 15-99 (99)
45 PRK02888 nitrous-oxide reducta 98.1 1.6E-05 3.4E-10 85.4 10.3 101 40-150 532-635 (635)
46 PF00127 Copper-bind: Copper b 98.1 9.1E-06 2E-10 67.8 6.5 78 59-148 15-99 (99)
47 PF00394 Cu-oxidase: Multicopp 98.1 1.2E-05 2.5E-10 73.4 7.6 92 413-515 59-156 (159)
48 TIGR03094 sulfo_cyanin sulfocy 98.0 0.00014 3.1E-09 65.2 13.0 97 50-150 73-187 (195)
49 TIGR02657 amicyanin amicyanin. 98.0 3.3E-05 7.1E-10 62.1 8.3 74 60-148 10-83 (83)
50 TIGR03095 rusti_cyanin rusticy 97.9 5.1E-05 1.1E-09 67.9 7.9 89 414-514 52-147 (148)
51 PF06525 SoxE: Sulfocyanin (So 97.9 0.00021 4.5E-09 65.7 11.8 100 50-150 74-188 (196)
52 TIGR02656 cyanin_plasto plasto 97.5 0.00044 9.5E-09 57.6 7.6 83 414-515 17-99 (99)
53 TIGR03096 nitroso_cyanin nitro 97.4 0.00064 1.4E-08 59.0 7.8 59 415-500 62-120 (135)
54 COG3794 PetE Plastocyanin [Ene 97.4 0.00076 1.7E-08 58.2 8.2 75 61-149 54-128 (128)
55 TIGR02375 pseudoazurin pseudoa 97.4 0.001 2.2E-08 56.7 8.7 75 60-150 14-89 (116)
56 TIGR03102 halo_cynanin halocya 97.1 0.0031 6.6E-08 53.7 8.3 73 60-148 41-115 (115)
57 PF13473 Cupredoxin_1: Cupredo 96.7 0.0046 1E-07 51.9 6.3 62 415-505 36-97 (104)
58 PF00127 Copper-bind: Copper b 96.2 0.03 6.4E-07 46.5 8.3 82 414-515 17-99 (99)
59 PRK02710 plastocyanin; Provisi 95.6 0.043 9.4E-07 47.2 7.1 71 415-514 48-118 (119)
60 PRK02888 nitrous-oxide reducta 95.3 0.061 1.3E-06 58.5 8.4 75 415-516 556-634 (635)
61 PF06525 SoxE: Sulfocyanin (So 95.0 0.095 2.1E-06 48.4 7.6 88 193-282 74-171 (196)
62 TIGR02657 amicyanin amicyanin. 95.0 0.12 2.7E-06 41.2 7.4 71 415-514 12-82 (83)
63 TIGR02375 pseudoazurin pseudoa 94.5 0.25 5.5E-06 42.2 8.6 37 478-518 54-90 (116)
64 PRK10378 inactive ferrous ion 94.0 0.32 6.8E-06 50.1 9.6 76 58-150 41-118 (375)
65 PF00116 COX2: Cytochrome C ox 93.5 0.41 8.8E-06 41.2 8.0 74 60-147 45-119 (120)
66 COG4454 Uncharacterized copper 93.4 0.71 1.5E-05 41.0 9.3 89 57-149 59-158 (158)
67 COG4454 Uncharacterized copper 92.7 0.65 1.4E-05 41.2 8.0 93 416-515 65-157 (158)
68 COG3794 PetE Plastocyanin [Ene 92.2 0.7 1.5E-05 40.0 7.5 74 415-516 55-128 (128)
69 TIGR03102 halo_cynanin halocya 92.2 0.87 1.9E-05 38.8 8.0 73 415-515 43-115 (115)
70 TIGR02695 azurin azurin. Azuri 91.5 1.1 2.3E-05 38.5 7.8 85 61-146 16-124 (125)
71 TIGR02866 CoxB cytochrome c ox 90.5 0.91 2E-05 42.9 7.3 78 414-519 117-195 (201)
72 PF00116 COX2: Cytochrome C ox 89.6 3.5 7.5E-05 35.5 9.5 75 413-515 45-120 (120)
73 TIGR02866 CoxB cytochrome c ox 88.1 7.1 0.00015 36.8 11.4 77 60-150 116-193 (201)
74 COG1622 CyoA Heme/copper-type 87.7 1.7 3.7E-05 42.3 7.0 82 413-523 136-218 (247)
75 PF12690 BsuPI: Intracellular 84.8 13 0.00029 29.5 9.6 66 214-280 3-82 (82)
76 TIGR02695 azurin azurin. Azuri 81.3 10 0.00022 32.6 8.0 78 204-281 15-111 (125)
77 COG4263 NosZ Nitrous oxide red 81.1 2.3 4.9E-05 44.2 4.7 79 61-149 558-637 (637)
78 TIGR01433 CyoA cytochrome o ub 78.8 4.2 9.1E-05 39.1 5.6 77 415-519 140-217 (226)
79 COG1622 CyoA Heme/copper-type 78.3 13 0.00029 36.2 8.9 78 60-151 136-214 (247)
80 COG2967 ApaG Uncharacterized p 76.6 2.7 5.8E-05 35.4 3.0 66 73-152 34-107 (126)
81 PF05938 Self-incomp_S1: Plant 74.3 8.6 0.00019 32.3 5.8 69 72-149 2-70 (110)
82 MTH00140 COX2 cytochrome c oxi 70.7 13 0.00029 35.8 6.8 79 413-519 139-218 (228)
83 TIGR03094 sulfo_cyanin sulfocy 69.4 35 0.00075 31.4 8.5 95 414-515 85-185 (195)
84 TIGR01432 QOXA cytochrome aa3 66.3 12 0.00025 35.9 5.4 77 415-519 131-208 (217)
85 MTH00047 COX2 cytochrome c oxi 66.1 31 0.00068 32.3 8.0 77 414-518 116-193 (194)
86 PF12690 BsuPI: Intracellular 65.3 41 0.00089 26.7 7.5 57 62-129 17-80 (82)
87 TIGR03079 CH4_NH3mon_ox_B meth 64.3 98 0.0021 31.7 11.4 16 105-120 337-352 (399)
88 PTZ00047 cytochrome c oxidase 64.1 25 0.00054 31.8 6.6 78 414-519 73-151 (162)
89 PF14344 DUF4397: Domain of un 63.9 90 0.0019 26.4 11.0 20 216-235 3-23 (122)
90 PF07705 CARDB: CARDB; InterP 59.8 88 0.0019 24.9 9.7 66 208-282 14-83 (101)
91 MTH00023 COX2 cytochrome c oxi 56.5 33 0.00072 33.3 6.7 79 413-519 150-229 (240)
92 PF01835 A2M_N: MG2 domain; I 56.5 40 0.00086 27.4 6.3 70 209-282 11-85 (99)
93 PRK05461 apaG CO2+/MG2+ efflux 53.6 14 0.00031 32.0 3.2 43 73-117 35-85 (127)
94 PF10633 NPCBM_assoc: NPCBM-as 53.4 88 0.0019 24.2 7.5 65 209-282 1-75 (78)
95 PRK10378 inactive ferrous ion 53.0 56 0.0012 33.9 7.9 86 194-300 33-118 (375)
96 PF04151 PPC: Bacterial pre-pe 52.1 66 0.0014 24.2 6.5 65 205-281 5-69 (70)
97 MTH00098 COX2 cytochrome c oxi 51.6 51 0.0011 31.7 7.0 78 413-518 139-217 (227)
98 PF04744 Monooxygenase_B: Mono 50.2 73 0.0016 32.7 7.9 138 3-146 200-377 (381)
99 COG4633 Plastocyanin domain co 50.0 2.4E+02 0.0052 27.0 11.1 89 43-152 79-172 (272)
100 MTH00129 COX2 cytochrome c oxi 49.7 49 0.0011 32.0 6.5 79 413-519 139-218 (230)
101 MTH00139 COX2 cytochrome c oxi 47.0 58 0.0013 31.3 6.6 79 412-518 138-217 (226)
102 MTH00038 COX2 cytochrome c oxi 45.4 58 0.0013 31.4 6.3 79 413-519 139-218 (229)
103 MTH00008 COX2 cytochrome c oxi 45.1 74 0.0016 30.7 7.0 79 413-519 139-218 (228)
104 PF04379 DUF525: Protein of un 44.0 12 0.00025 30.4 1.1 52 73-126 18-79 (90)
105 MTH00185 COX2 cytochrome c oxi 43.2 89 0.0019 30.2 7.2 78 413-518 139-217 (230)
106 PF11142 DUF2917: Protein of u 41.8 86 0.0019 23.5 5.4 46 207-264 2-47 (63)
107 MTH00154 COX2 cytochrome c oxi 41.6 81 0.0018 30.4 6.7 78 414-519 140-218 (227)
108 PRK10525 cytochrome o ubiquino 40.5 58 0.0013 33.0 5.6 75 414-516 151-226 (315)
109 MTH00076 COX2 cytochrome c oxi 38.5 79 0.0017 30.5 6.1 78 413-518 139-217 (228)
110 MTH00027 COX2 cytochrome c oxi 38.5 86 0.0019 30.9 6.4 79 413-519 173-252 (262)
111 PF07691 PA14: PA14 domain; I 37.9 2.2E+02 0.0047 24.5 8.5 61 206-271 53-120 (145)
112 MTH00080 COX2 cytochrome c oxi 36.5 1E+02 0.0022 29.8 6.5 79 413-519 142-221 (231)
113 MTH00168 COX2 cytochrome c oxi 35.9 95 0.0021 29.8 6.2 78 413-518 139-217 (225)
114 PF14392 zf-CCHC_4: Zinc knuck 35.8 62 0.0013 22.8 3.6 41 466-506 4-45 (49)
115 MTH00117 COX2 cytochrome c oxi 34.8 1.3E+02 0.0028 28.9 6.9 78 413-518 139-217 (227)
116 smart00758 PA14 domain in bact 33.4 2.7E+02 0.0059 23.7 8.3 61 207-272 52-113 (136)
117 PF15415 DUF4622: Protein of u 33.0 3.2E+02 0.007 26.4 8.8 43 205-248 94-137 (310)
118 COG1188 Ribosome-associated he 32.6 35 0.00075 28.2 2.1 30 52-81 36-65 (100)
119 MTH00140 COX2 cytochrome c oxi 32.3 4.6E+02 0.01 25.1 13.0 77 60-150 139-216 (228)
120 PF11614 FixG_C: IG-like fold 31.9 1.8E+02 0.004 24.4 6.7 48 214-270 34-83 (118)
121 MTH00051 COX2 cytochrome c oxi 29.9 1.8E+02 0.0038 28.2 6.9 79 413-519 143-222 (234)
122 PRK13254 cytochrome c-type bio 29.4 1.2E+02 0.0025 27.2 5.1 73 25-104 28-103 (148)
123 PF14524 Wzt_C: Wzt C-terminal 29.4 1.5E+02 0.0032 25.3 6.0 73 207-282 29-107 (142)
124 PF10989 DUF2808: Protein of u 29.1 60 0.0013 28.8 3.3 26 476-501 99-128 (146)
125 PF14326 DUF4384: Domain of un 28.8 2.9E+02 0.0062 21.7 8.0 24 209-232 3-26 (83)
126 PF10989 DUF2808: Protein of u 28.6 71 0.0015 28.4 3.7 29 105-133 96-127 (146)
127 cd00916 Npc2_like Niemann-Pick 27.4 2.5E+02 0.0054 24.0 6.8 60 62-121 23-92 (123)
128 PF14016 DUF4232: Protein of u 27.2 2.3E+02 0.0051 24.3 6.7 54 214-270 21-81 (131)
129 COG3354 FlaG Putative archaeal 26.9 4.5E+02 0.0097 23.3 9.5 82 193-281 51-141 (154)
130 MTH00047 COX2 cytochrome c oxi 26.4 4.3E+02 0.0094 24.7 8.7 75 62-150 117-192 (194)
131 PF14451 Ub-Mut7C: Mut7-C ubiq 24.8 63 0.0014 25.6 2.3 27 48-74 48-74 (81)
132 COG1470 Predicted membrane pro 24.6 3.6E+02 0.0078 28.8 8.3 72 205-283 389-468 (513)
133 cd00918 Der-p2_like Several gr 24.3 3.7E+02 0.008 23.0 7.2 62 60-121 19-88 (120)
134 KOG4387 Ornithine decarboxylas 24.2 29 0.00064 31.6 0.4 29 63-91 71-99 (191)
135 PF04379 DUF525: Protein of un 23.6 1.8E+02 0.004 23.5 4.9 50 214-266 15-68 (90)
136 PF10794 DUF2606: Protein of u 23.5 1.3E+02 0.0028 25.6 4.0 59 5-63 15-75 (131)
137 KOG1554 COP9 signalosome, subu 23.1 58 0.0013 32.0 2.1 9 126-134 134-142 (347)
138 MTH00129 COX2 cytochrome c oxi 22.7 6.9E+02 0.015 24.0 10.0 43 106-149 172-215 (230)
139 PRK05461 apaG CO2+/MG2+ efflux 20.7 2.8E+02 0.006 24.1 5.7 48 215-265 33-84 (127)
140 COG4704 Uncharacterized protei 20.4 1.6E+02 0.0035 25.7 4.0 37 1-38 1-37 (151)
No 1
>PLN02835 oxidoreductase
Probab=100.00 E-value=4.2e-111 Score=898.73 Aligned_cols=515 Identities=63% Similarity=1.123 Sum_probs=424.6
Q ss_pred hhcCCCeEEEEEEEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCc
Q 009054 24 ARAESPYRFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYG 103 (545)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~ 103 (545)
..+.+++++|+|+|+++.+.+||+++.+|+|||++|||+||+++||+|+|+|+|+|+++|+|||||++|.+++++||+++
T Consensus 23 ~~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~ 102 (539)
T PLN02835 23 VNGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLG 102 (539)
T ss_pred hhccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCcc
Confidence 44566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchhhHHHhh
Q 009054 104 TTCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHNKLKSVL 183 (545)
Q Consensus 104 ~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~ 183 (545)
+||||+||++|+|+|++++++||||||||...|+.+||+|+|||++++..+.++..+|+|++|+++||+++....+...+
T Consensus 103 tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~ 182 (539)
T PLN02835 103 TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQRL 182 (539)
T ss_pred CcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHHHh
Confidence 99999999999999997778999999999999999999999999876555556666799999999999998776665555
Q ss_pred ccCCCCCCCCeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceE
Q 009054 184 DRGHRLPSPDGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSY 263 (545)
Q Consensus 184 ~~~~~~~~~~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~ 263 (545)
..+...+.++.+||||+.. +.++|++||+|||||||+|....+.|+|+||+|+||++||++++|..+++|.|++||||
T Consensus 183 ~~g~~~~~~d~~liNG~~~--~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~i~~GqRy 260 (539)
T PLN02835 183 DSGKVLPFPDGVLINGQTQ--STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSV 260 (539)
T ss_pred hcCCCCCCCceEEEccccC--ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCCceeeEEEECcCceE
Confidence 5665567889999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCcceEEEEeecccCCccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCC
Q 009054 264 SVLVTMDQPPQDFYIAVSTRFTNKVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTASGPRPNPQGSY 343 (545)
Q Consensus 264 dv~v~~~~~~g~y~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~ 343 (545)
||+|++++++|+|||++............|+|+|.++..+.+.++|..|..+...+...+......+.+....|.+..+.
T Consensus 261 dvlv~~~~~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~ 340 (539)
T PLN02835 261 AVLVTLNQSPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSF 340 (539)
T ss_pred EEEEEcCCCCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccc
Confidence 99999998889999998654433456789999998865433233343332111112222222222333333333333222
Q ss_pred CccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcE
Q 009054 344 HYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGF 423 (545)
Q Consensus 344 ~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ 423 (545)
.......++++.+.......+|...|+|||++|..|+.|+|++.++..++.|..+.+...+.+...+.++.++.++.|++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 420 (539)
T PLN02835 341 HYGKITPTKTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDF 420 (539)
T ss_pred cccccCCCceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCE
Confidence 12222345555554322223566889999999999999998776666666666443333333333556788999999999
Q ss_pred EEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccceeeeecchhh
Q 009054 424 IEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMWNVRSEFWAR 503 (545)
Q Consensus 424 v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H 503 (545)
|||+|+|.+...||||||||+||||++|.|.|++.....+|+.||++|||+.|+++||++|||++||||.|+|||||++|
T Consensus 421 Veivi~N~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H 500 (539)
T PLN02835 421 LEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWER 500 (539)
T ss_pred EEEEEECCCCCCCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhh
Confidence 99999999888999999999999999999989765555678999999999999999999999999999999999999999
Q ss_pred hhcceEEEEEEeCCCccccccCCCCCcccccccccCC
Q 009054 504 QYLGQQFYLRVYSPVESIRDEYPIPKNALLCGRAKGK 540 (545)
Q Consensus 504 ~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~ 540 (545)
+..||+++|.|.++.+...+..+||++++.||..+++
T Consensus 501 ~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~Cg~~~~~ 537 (539)
T PLN02835 501 QYLGQQFYLRVWNQVHSLANEYDIPDNALLCGKAIGR 537 (539)
T ss_pred hhcccEEEEEEccCCCccccccCCCccccccccCccC
Confidence 9999999999999877777788999999999987774
No 2
>PLN02991 oxidoreductase
Probab=100.00 E-value=1.1e-110 Score=890.91 Aligned_cols=519 Identities=74% Similarity=1.280 Sum_probs=430.2
Q ss_pred HHhhhcCCCeEEEEEEEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCC
Q 009054 21 AIVARAESPYRFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDG 100 (545)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG 100 (545)
...+.+.+++++|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++|.+++++||
T Consensus 19 ~~~~~~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DG 98 (543)
T PLN02991 19 ISFVAAEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDG 98 (543)
T ss_pred HhhhhccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccC
Confidence 33455677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchhhHH
Q 009054 101 VYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHNKLK 180 (545)
Q Consensus 101 v~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~ 180 (545)
++++||||+||++|+|+|++++++||||||||.+.|+.+||+|+|||++++.++.|+..+++|++|+|+||+++....+.
T Consensus 99 v~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~ 178 (543)
T PLN02991 99 VYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLR 178 (543)
T ss_pred CCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHH
Confidence 99889999999999999998678999999999999999999999999997655566666688999999999998766665
Q ss_pred HhhccCCCCCCCCeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeEEeEEEEccC
Q 009054 181 SVLDRGHRLPSPDGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVG 260 (545)
Q Consensus 181 ~~~~~~~~~~~~~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pg 260 (545)
..+..+...+.++.+||||+.. .+.++|++|++|||||||+|....+.|+|+||+|+|||+||.+++|..++++.|++|
T Consensus 179 ~~~~~~~~~~~~d~~liNG~~~-~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i~~G 257 (543)
T PLN02991 179 AQLDNGGKLPLPDGILINGRGS-GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVHVG 257 (543)
T ss_pred HHhhcCCCCCCCCEEEEccCCC-CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEEEEcCC
Confidence 5555555566889999999974 378999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeCCCCcceEEEEeecccCCccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCC
Q 009054 261 QSYSVLVTMDQPPQDFYIAVSTRFTNKVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTASGPRPNPQ 340 (545)
Q Consensus 261 eR~dv~v~~~~~~g~y~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~ 340 (545)
|||||+|++++++|+|||++..........+.|||+|+++..+...+.|..|. +..++.+.....+..+.+....+.|.
T Consensus 258 QRydvlv~a~~~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~l~p~~~~~~p~ 336 (543)
T PLN02991 258 QSYSVLITADQPAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPI-QLSWSFDQARAIKTNLTASGPRPNPQ 336 (543)
T ss_pred cEEEEEEECCCCCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCc-cccccccchhhhhhcccCCCCCCCCC
Confidence 99999999999899999999865544556789999999875422223333331 22222222212223344333333333
Q ss_pred CCCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCC
Q 009054 341 GSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADF 420 (545)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 420 (545)
.++.......++.+.+.......++..+|+|||.+|..|+.|+|.+.++..+|+|+.+.....|.+......+.++.++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~ 416 (543)
T PLN02991 337 GSYHYGKINITRTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDY 416 (543)
T ss_pred ccccccccccceeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCC
Confidence 32222223344555444322222466789999999999999998877777778887654444444333445677889999
Q ss_pred CcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccceeeeecc
Q 009054 421 RGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMWNVRSEF 500 (545)
Q Consensus 421 g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHi 500 (545)
+++|||+|+|.+...||||||||+||||++|.|.|++.+...+|+.||++|||+.||++||++|||++||||.|+|||||
T Consensus 417 ~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi 496 (543)
T PLN02991 417 KAFVEIVFENWEDIVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSEL 496 (543)
T ss_pred CCEEEEEEeCCCCCCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCc
Confidence 99999999999888999999999999999999999876556799999999999999999999999999999999999999
Q ss_pred hhhhhcceEEEEEEeCCCccccccCCCCCcccccccccCCC
Q 009054 501 WARQYLGQQFYLRVYSPVESIRDEYPIPKNALLCGRAKGKH 541 (545)
Q Consensus 501 l~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~~ 541 (545)
..|+..||++++.|.++.+...++.+||++.++||..++..
T Consensus 497 ~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~Cg~~~~~~ 537 (543)
T PLN02991 497 WERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLCGRATGHH 537 (543)
T ss_pred cccccccEEEEEEecCCCCccccccCCCcccCccccCCCCC
Confidence 99999999999999998888877899999999998777643
No 3
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=2.6e-110 Score=893.64 Aligned_cols=528 Identities=60% Similarity=1.071 Sum_probs=427.2
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEEEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCC
Q 009054 14 VYFLAMFAIVARAESPYRFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQR 93 (545)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~ 93 (545)
.++++.++..+.+.+.+++|+|+|++..+.+||+.+.+++|||++|||+||+++||+|+|+|+|+|+++++|||||++|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~ 90 (552)
T PLN02354 11 LCLAAAVALVVRAEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQR 90 (552)
T ss_pred HHHHHHHHHhhhccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCC
Confidence 33444444445567789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeee
Q 009054 94 RNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYK 173 (545)
Q Consensus 94 ~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~ 173 (545)
+++++||++++||||+||++|+|+|++.+++||||||||...|+.+||+|+|||++++..+.+|+.+++|++|+++||++
T Consensus 91 ~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~ 170 (552)
T PLN02354 91 KNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYT 170 (552)
T ss_pred CCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeecc
Confidence 99999999989999999999999999767899999999999999999999999999765566776678999999999999
Q ss_pred cchhhHHHhhccCCCCCCCCeEEEcccCC-----CCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccce
Q 009054 174 ANHNKLKSVLDRGHRLPSPDGILINGHGS-----NGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTI 248 (545)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~liNG~~~-----~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~ 248 (545)
+....+...+..+...+.++.+||||+.. ..+.++|++||+|||||||+|....+.|+|+||+|+|||+||++++
T Consensus 171 ~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~ 250 (552)
T PLN02354 171 KSHTALKKFLDSGRTLGRPDGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVL 250 (552)
T ss_pred CCHHHHHHHHhcCCCCCCCCeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccC
Confidence 97766666665555456789999999962 2478999999999999999999999999999999999999999999
Q ss_pred eeEEeEEEEccCceEEEEEEeCCCCcceEEEEeecccCCccceEEEEEecCCCCCCCCCCCCCCCccccccccccccccc
Q 009054 249 QTTYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTRFTNKVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRT 328 (545)
Q Consensus 249 p~~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~ 328 (545)
|..+++|.|++||||||+|++++++|+|||++..........+.|+|+|.++..+++...|..| ....++.+.+.+.+.
T Consensus 251 p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~-~~~~~~~~~~~~~~~ 329 (552)
T PLN02354 251 QNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAP-VGWAWSLNQFRSFRW 329 (552)
T ss_pred CcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCC-cccccchhhhhhhhh
Confidence 9999999999999999999999888999999986544455678999999886543222233222 111122222333333
Q ss_pred CCCCCCCCCCCCCCCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccc-cccccCCCCCC-CC-
Q 009054 329 NLTASGPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIG-GVFRVGSIQDQ-PT- 405 (545)
Q Consensus 329 ~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~-~~~~~~~~~~~-p~- 405 (545)
++.+....|.+...........++++.+...+...++..+|+|||.+|..|+.|+|.+.++++. |.+..+..... |.
T Consensus 330 ~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~ 409 (552)
T PLN02354 330 NLTASAARPNPQGSYHYGKINITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAK 409 (552)
T ss_pred cccccccCCCCCCccccccccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccc
Confidence 3333322333322211112334555655443222346678999999999999999877655332 44443311111 11
Q ss_pred CCCccccceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEE
Q 009054 406 GGNIYLDTSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIY 485 (545)
Q Consensus 406 ~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~ir 485 (545)
......+++++.++.|++|||+|+|.+...||||||||+||||++|.|.|++.....+|+.||++|||+.||++||++||
T Consensus 410 ~~~~~~~~~v~~~~~~~~VeiVi~n~~~~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIR 489 (552)
T PLN02354 410 ITKIKIQPNVLNITFRTFVEIIFENHEKSMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAIL 489 (552)
T ss_pred cCccccCCeeEEcCCCCEEEEEEeCCCCCCCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEE
Confidence 11234567888999999999999999888999999999999999999999876556789999999999999999999999
Q ss_pred EEeCCccceeeeecchhhhhcceEEEEEEeCCCccccccCCCCCcccccccccCCCC
Q 009054 486 VALDNVGMWNVRSEFWARQYLGQQFYLRVYSPVESIRDEYPIPKNALLCGRAKGKHT 542 (545)
Q Consensus 486 f~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~~~ 542 (545)
|++||||+|+|||||+.|++.||+++|.|.++.+.+.+..++|++.+.|+..++++.
T Consensus 490 F~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C~~~~~~~~ 546 (552)
T PLN02354 490 LTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLCGKVKGLPK 546 (552)
T ss_pred EEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCccccccccccCCCC
Confidence 999999999999999999999999999999887777667789999999998887653
No 4
>PLN02792 oxidoreductase
Probab=100.00 E-value=1.4e-108 Score=876.23 Aligned_cols=514 Identities=69% Similarity=1.187 Sum_probs=426.1
Q ss_pred cCCCeEEEEEEEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccC
Q 009054 26 AESPYRFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTT 105 (545)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q 105 (545)
..+++.+|+|+|++..+++||+.+.+++|||++|||+||+++||+|+|+|+|+|+++++|||||++|.+++++||++++|
T Consensus 12 ~~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tq 91 (536)
T PLN02792 12 KADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTT 91 (536)
T ss_pred hcCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCc
Confidence 44556799999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchhhHHHhhcc
Q 009054 106 CPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHNKLKSVLDR 185 (545)
Q Consensus 106 ~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 185 (545)
|||+||++|+|+|++++++||||||||...|+.+||+|+|||++++..+.+++..++|++|+++||+++....+.+.+..
T Consensus 92 cPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~~~~~ 171 (536)
T PLN02792 92 CPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKKILDG 171 (536)
T ss_pred CccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHHHhhc
Confidence 99999999999999877899999999999999999999999988655555666678899999999999877666655555
Q ss_pred CCCCC-CCCeEEEcccCC-CCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceE
Q 009054 186 GHRLP-SPDGILINGHGS-NGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSY 263 (545)
Q Consensus 186 ~~~~~-~~~~~liNG~~~-~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~ 263 (545)
+...+ .++.+||||++. ..+.++|++||+|||||||+|....+.|+|+||+|+|||+||++++|..+++|.|+|||||
T Consensus 172 g~~~~~~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~GqRy 251 (536)
T PLN02792 172 GRKLPLMPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHVGQTY 251 (536)
T ss_pred cCcCCCCCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEEEEccCceE
Confidence 54333 789999999974 2377999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCcceEEEEeecccCCccceEEEEEecCCCCCCCCCCCCCC-CcccccccccccccccCCCCCCCCCCCCCC
Q 009054 264 SVLVTMDQPPQDFYIAVSTRFTNKVLTSTGTLHYSNSAHPVSGPVPGGP-TTQIDWSLNQARSIRTNLTASGPRPNPQGS 342 (545)
Q Consensus 264 dv~v~~~~~~g~y~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p-~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~ 342 (545)
||+|++++++|+|||++...+.+....+.|||+|.++..... ..|..| ..+..++.+....++..+.+..+.+.|+.+
T Consensus 252 dVlV~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~-~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~ 330 (536)
T PLN02792 252 SVLVTMDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKI-IHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGS 330 (536)
T ss_pred EEEEEcCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCC-CCCCCCCcCCccccccchhhhhhccCCCCCCCCCCcc
Confidence 999999988899999998654444567889999988653211 112222 223333332322233344433334445443
Q ss_pred CCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCC-CCccccceEEecCCC
Q 009054 343 YHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTG-GNIYLDTSVMGADFR 421 (545)
Q Consensus 343 ~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~g 421 (545)
........++++.+.......++...|+|||.+|..|++|+|++.++++.|+++.+.+++.|.. +....++.++.++.|
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~ 410 (536)
T PLN02792 331 YHYGKMKISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHN 410 (536)
T ss_pred cccceeccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCC
Confidence 3332333455555543322234567899999999999999998777777777765534443321 223346788999999
Q ss_pred cEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccceeeeecch
Q 009054 422 GFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMWNVRSEFW 501 (545)
Q Consensus 422 ~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil 501 (545)
++|||+|+|.....||||||||+||||++|.|.|++.....+|+.||++|||+.|+++||++|||++||||+|+||||+.
T Consensus 411 ~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~ 490 (536)
T PLN02792 411 AFLEIIFQNREKIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFW 490 (536)
T ss_pred CEEEEEEECCCCCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcch
Confidence 99999999988889999999999999999999998876677999999999999999999999999999999999999999
Q ss_pred hhhhcceEEEEEEeCCCccccccCCCCCcccccccccCC
Q 009054 502 ARQYLGQQFYLRVYSPVESIRDEYPIPKNALLCGRAKGK 540 (545)
Q Consensus 502 ~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~ 540 (545)
.|+..||+++|.|.++.+...++.+||++.+.||..+++
T Consensus 491 ~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~Cg~~~~~ 529 (536)
T PLN02792 491 ARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLCGRASNK 529 (536)
T ss_pred hccccceEEEEEEccCCCccccccCCCcccCccccccCC
Confidence 999999999999998888777789999999999988875
No 5
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=1.8e-108 Score=875.65 Aligned_cols=513 Identities=51% Similarity=0.883 Sum_probs=409.6
Q ss_pred hhcCCCeEEEEEEEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCc
Q 009054 24 ARAESPYRFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYG 103 (545)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~ 103 (545)
..|.+++++|+|+|++..+.+||+.+.+++|||++|||+||+++||+|+|+|+|+|+++|+|||||++|.+++++||+++
T Consensus 20 ~~~~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~g 99 (545)
T PLN02168 20 SYAFAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRG 99 (545)
T ss_pred hhccccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCC
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchhhHHHhh
Q 009054 104 TTCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHNKLKSVL 183 (545)
Q Consensus 104 ~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~ 183 (545)
+||||+||++|+|+|++++++||||||||.+.|+.+||+|+|||++++..+.++...+.|++|+++||++.+...+...+
T Consensus 100 tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~ 179 (545)
T PLN02168 100 TNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRASL 179 (545)
T ss_pred CcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHhhh
Confidence 99999999999999998668999999999999999999999999997665556656688999999999998655554444
Q ss_pred ccCCCCCCCCeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceE
Q 009054 184 DRGHRLPSPDGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSY 263 (545)
Q Consensus 184 ~~~~~~~~~~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~ 263 (545)
..+...+.++.+||||+....+.++|++|++|||||||+|....+.|+|+||+|+|||+||.+++|..+++|.|++||||
T Consensus 180 ~~g~~~~~~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRy 259 (545)
T PLN02168 180 DNGHSLPNPDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQSY 259 (545)
T ss_pred hcCCCCCCCCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEEEcCCceE
Confidence 44434457899999999744489999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCC-c---ceEEEEeecccCCccceEEEEEecCCCCCCCCCCCCCCC-cccccccccccccccCCCCCCCCCC
Q 009054 264 SVLVTMDQPP-Q---DFYIAVSTRFTNKVLTSTGTLHYSNSAHPVSGPVPGGPT-TQIDWSLNQARSIRTNLTASGPRPN 338 (545)
Q Consensus 264 dv~v~~~~~~-g---~y~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~l~~~l~~~~~~p~ 338 (545)
||+|++++++ | +|||++..........+.|+|+|+++......++|..|. .+...+.+....++..+.+..+.+.
T Consensus 260 dvlv~a~~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~ 339 (545)
T PLN02168 260 SVLVTAKTDPVGIYRSYYIVATARFTDAYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSN 339 (545)
T ss_pred EEEEEcCCCCCCCcceEEEEEEecccCCCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCC
Confidence 9999998654 4 899999875545567789999998764422223333231 1221111222222223333223333
Q ss_pred CCCCCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEec
Q 009054 339 PQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGA 418 (545)
Q Consensus 339 p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 418 (545)
|..++.......++++.+.......+|..+|+|||.+|..|++|++.+.+++.++.+..+..+..|.+.....+++++.+
T Consensus 340 p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~ 419 (545)
T PLN02168 340 PQGSYHYGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDI 419 (545)
T ss_pred CcccccccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEe
Confidence 33222222233455554443211124567899999999999999987666654444443322222322112235778899
Q ss_pred CCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccceeeee
Q 009054 419 DFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMWNVRS 498 (545)
Q Consensus 419 ~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HC 498 (545)
+.|++|||+|+|.....||||||||+||||++|.|.|++.....+|+.||++|||+.|+++||++|||++||||.|+|||
T Consensus 420 ~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HC 499 (545)
T PLN02168 420 HYKDFYHIVFQNPLFSLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRS 499 (545)
T ss_pred cCCCEEEEEEeCCCCCCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeee
Confidence 99999999999998889999999999999999999998766567999999999999999999999999999999999999
Q ss_pred cchhhhhcceEEEEEEeCC-----Cc-cccccCCCCCccccccc
Q 009054 499 EFWARQYLGQQFYLRVYSP-----VE-SIRDEYPIPKNALLCGR 536 (545)
Q Consensus 499 Hil~H~d~GMm~~~~V~~~-----~~-~~~~~~~~p~~~~~c~~ 536 (545)
||+.||+.||+++++|.++ ++ ...+..++|+++++||.
T Consensus 500 Hi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~cg~ 543 (545)
T PLN02168 500 QKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRCGK 543 (545)
T ss_pred cCcccceecCcEEEEEEcccccCccccccccccCCChhhccccc
Confidence 9999999999999998533 22 23446789999999983
No 6
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=1.8e-108 Score=878.31 Aligned_cols=519 Identities=50% Similarity=0.894 Sum_probs=421.2
Q ss_pred hhcCCCeEEEEEEEEEEEecCCC--eeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCC
Q 009054 24 ARAESPYRFFTWNVTYGDIYPLG--VRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGV 101 (545)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~~dG--~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv 101 (545)
+.|++++++|+|+|++..+++|| ..+.+++|||++|||+||+++||+|+|+|+|+|+++++|||||++|+.++++||+
T Consensus 21 ~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv 100 (596)
T PLN00044 21 AGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGV 100 (596)
T ss_pred cccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCC
Confidence 45677899999999999999998 5578999999999999999999999999999999999999999999999999999
Q ss_pred CccCCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCCCCCCCCCCC-CcceEEEeeeeecchhhHH
Q 009054 102 YGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLIPVPFPEPA-GDFTVLIGDWYKANHNKLK 180 (545)
Q Consensus 102 ~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~-~e~~l~~~d~~~~~~~~~~ 180 (545)
+++||||+||++|+|+|++++++||||||||...|+++||+|+|||++++..+.|+...+ +|.+|+++||++++..++.
T Consensus 101 ~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~~ 180 (596)
T PLN00044 101 GGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRALR 180 (596)
T ss_pred CCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHHHH
Confidence 888999999999999999877899999999999999999999999999766555664434 7999999999998776665
Q ss_pred HhhccCCCCCCCCeEEEcccCCC------------CceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccce
Q 009054 181 SVLDRGHRLPSPDGILINGHGSN------------GASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTI 248 (545)
Q Consensus 181 ~~~~~~~~~~~~~~~liNG~~~~------------~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~ 248 (545)
..+..+.....++.++|||++.. .+.++|++|++|||||||++....+.|+|+||+|+|||+||.+++
T Consensus 181 ~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v~ 260 (596)
T PLN00044 181 RALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSYTS 260 (596)
T ss_pred HHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCcccC
Confidence 55555544457899999998641 147999999999999999999999999999999999999999999
Q ss_pred eeEEeEEEEccCceEEEEEEeCCCCc-ceEEEEeeccc----CCccceEEEEEecCCCCCCCCCCCCCC--Ccccccccc
Q 009054 249 QTTYSSLDVHVGQSYSVLVTMDQPPQ-DFYIAVSTRFT----NKVLTSTGTLHYSNSAHPVSGPVPGGP--TTQIDWSLN 321 (545)
Q Consensus 249 p~~~~~v~l~pgeR~dv~v~~~~~~g-~y~~~~~~~~~----~~~~~~~ail~y~~~~~~~~~~~p~~p--~~~~~~~~~ 321 (545)
|+.+++|.|++||||||+|+++++++ +|||++..... .+...+.|||+|.++..+...+.|..| ..++.++.+
T Consensus 261 P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~ 340 (596)
T PLN00044 261 QQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSIN 340 (596)
T ss_pred ceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhh
Confidence 99999999999999999999998765 89999864321 245678899999886542222233333 223333332
Q ss_pred cccccccCCCCCCCCCCCCCCCCccccccceEEEeecc-ccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCC
Q 009054 322 QARSIRTNLTASGPRPNPQGSYHYGLINISRTIKLESS-AGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSI 400 (545)
Q Consensus 322 ~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~-~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~ 400 (545)
....++.........|.|..+.........+.+.+... ....+|...|+|||.+|..|+.|+|++.+++.+|+|+.++.
T Consensus 341 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp 420 (596)
T PLN00044 341 QARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFP 420 (596)
T ss_pred hhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCC
Confidence 33334433333233343433221111222222222210 01113568899999999999999998877777888876643
Q ss_pred CCCCCCCCccccceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCC
Q 009054 401 QDQPTGGNIYLDTSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKS 480 (545)
Q Consensus 401 ~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~ 480 (545)
...|. ......+.++.++.|++|||+|+|.....||||||||+|+||++|.|.|++.....+|+.||++|||+.|+++|
T Consensus 421 ~~pp~-~~~~~~t~v~~~~~n~~VeiV~qn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~g 499 (596)
T PLN00044 421 NHPMN-RLPKLDTSIINGTYKGFMEIIFQNNATNVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGA 499 (596)
T ss_pred CCCCc-cccccCceEEEcCCCCEEEEEEeCCCCCCCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCC
Confidence 33332 22334788889999999999999987789999999999999999999999876678999999999999999999
Q ss_pred EEEEEEEeCCccceeeeecchhhhhcceEEEEEEeCCCcc-ccccCCCCCcccccccccCCCCC
Q 009054 481 WTAIYVALDNVGMWNVRSEFWARQYLGQQFYLRVYSPVES-IRDEYPIPKNALLCGRAKGKHTR 543 (545)
Q Consensus 481 ~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~-~~~~~~~p~~~~~c~~~~~~~~~ 543 (545)
|++|||++||||+|+|||||+.|++.||+++|.|.++.+. ..++.+||++++.||..+++..+
T Consensus 500 W~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~Cg~~~~~~~~ 563 (596)
T PLN00044 500 WTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFCGALSSLQKE 563 (596)
T ss_pred eEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCcccccccCCCC
Confidence 9999999999999999999999999999999999988764 66789999999999988887665
No 7
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.4e-100 Score=806.60 Aligned_cols=519 Identities=50% Similarity=0.826 Sum_probs=456.0
Q ss_pred hhhcCCCeEEEEEEEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCC
Q 009054 23 VARAESPYRFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVY 102 (545)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~ 102 (545)
.+.|.++.+.++|+++...+.++|.++.++++||++|||+|+|++||+|.|+|+|+++++++|||||++|..++|+||+.
T Consensus 21 ~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG~~ 100 (563)
T KOG1263|consen 21 FSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDGVY 100 (563)
T ss_pred HhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccCCc
Confidence 46688999999999999999999999999999999999999999999999999999999999999999999999999944
Q ss_pred ccCCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeec-chhhHHH
Q 009054 103 GTTCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKA-NHNKLKS 181 (545)
Q Consensus 103 ~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~-~~~~~~~ 181 (545)
++||||+||++|+|+|++++|.||||||+|...|+++|++|+|||+++...+.|++.+++|++|+++||+.+ ....+..
T Consensus 101 ~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~l~~ 180 (563)
T KOG1263|consen 101 ITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKNLKN 180 (563)
T ss_pred cccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHHHHH
Confidence 449999999999999999889999999999999999999999999998877778888999999999999995 7777777
Q ss_pred hhccCCCCCC-CCeEEEcccCCCC----ceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeEEeEEE
Q 009054 182 VLDRGHRLPS-PDGILINGHGSNG----ASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTTYSSLD 256 (545)
Q Consensus 182 ~~~~~~~~~~-~~~~liNG~~~~~----~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~ 256 (545)
.++.+...+. +|..+|||+.... +.++|++||+|||||+|+|....+.|+|++|+|+||++||.+++|..+++|.
T Consensus 181 ~~~~~~~~p~~~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~~~~l~ 260 (563)
T KOG1263|consen 181 FLDRTGALPNPSDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFTTDSLD 260 (563)
T ss_pred hhccCCCCCCCCCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEeeeeeceEE
Confidence 7776655544 8999999999532 7899999999999999999999999999999999999999999999999999
Q ss_pred EccCceEEEEEEeCCCCcceEEEEeecccCC----ccceEEEEEecCCCCCCCCCCC---C-CCCccccccccccccccc
Q 009054 257 VHVGQSYSVLVTMDQPPQDFYIAVSTRFTNK----VLTSTGTLHYSNSAHPVSGPVP---G-GPTTQIDWSLNQARSIRT 328 (545)
Q Consensus 257 l~pgeR~dv~v~~~~~~g~y~~~~~~~~~~~----~~~~~ail~y~~~~~~~~~~~p---~-~p~~~~~~~~~~~~~l~~ 328 (545)
|.||||+||+|++++.+++|+|.+.+.+... ...+.++++|.+...+.+...+ . .|..+..++....+.++.
T Consensus 261 i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~r~ 340 (563)
T KOG1263|consen 261 IHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSIRS 340 (563)
T ss_pred EcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcccc
Confidence 9999999999999999999999999877655 7788999999985544333322 1 223566677778888888
Q ss_pred CCCCCCCCCCCCCCCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCC-C-C
Q 009054 329 NLTASGPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQP-T-G 406 (545)
Q Consensus 329 ~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p-~-~ 406 (545)
.++...+.|+|++.+......+.+.+.+..+....++..+++||+.+|..|+.|.++++++...+.+..+.+++.| . .
T Consensus 341 ~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~ 420 (563)
T KOG1263|consen 341 LLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKF 420 (563)
T ss_pred cccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCcccc
Confidence 8888888899998776666667777777665545578899999999999999999998877554333344444444 2 1
Q ss_pred C-C-ccccceEEecCCCcEEEEEEEcCC---CCCCceeecCCceEEEeeccCcCCC--CCCCCCCCCCCCccceEEeCCC
Q 009054 407 G-N-IYLDTSVMGADFRGFIEIVFQNHE---NIVQSWHIDGYNFWVVGMNGGVWTP--ASRNEYNLRDAVSRCTTQVYPK 479 (545)
Q Consensus 407 ~-~-~~~~~~~~~~~~g~~v~~~i~N~~---~~~HP~HlHG~~F~Vl~~g~g~~~~--~~~~~~~~~~p~~rDTv~vp~~ 479 (545)
. . .+.++.++.++.++.|||+++|.+ ...||||||||+|+||++|.|.|++ +....+|+.||+.||||.|+|+
T Consensus 421 ~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pg 500 (563)
T KOG1263|consen 421 DYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPG 500 (563)
T ss_pred CCccccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCC
Confidence 1 1 378999999999999999999988 5679999999999999999999998 4446789999999999999999
Q ss_pred CEEEEEEEeCCccceeeeecchhhhhcceEEEEEEeCCCccccccCCCCCcccccccccCCC
Q 009054 480 SWTAIYVALDNVGMWNVRSEFWARQYLGQQFYLRVYSPVESIRDEYPIPKNALLCGRAKGKH 541 (545)
Q Consensus 480 ~~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~~ 541 (545)
||++|||.|||||.|+||||+++|+..||+++|.|.++++..+++.+||.+.+.||..++.+
T Consensus 501 gw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~cg~~~~~~ 562 (563)
T KOG1263|consen 501 GWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKCGRASGIP 562 (563)
T ss_pred CEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccccccCCcC
Confidence 99999999999999999999999999999999999999998888899999999999988765
No 8
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=4.3e-100 Score=821.29 Aligned_cols=496 Identities=29% Similarity=0.515 Sum_probs=386.1
Q ss_pred CeEEEEEEEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCcc-CCc
Q 009054 29 PYRFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGT-TCP 107 (545)
Q Consensus 29 ~~~~~~l~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~-q~~ 107 (545)
++++|+|+|+++.+++||+++.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||++|.+++++||++++ ||+
T Consensus 2 ~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~p 81 (539)
T TIGR03389 2 EVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCP 81 (539)
T ss_pred ceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCCCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchhhHH-HhhccC
Q 009054 108 IPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHNKLK-SVLDRG 186 (545)
Q Consensus 108 i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~-~~~~~~ 186 (545)
|+||++|+|+|++++++||||||||.+.|+ +||+|+|||++++..+.+++..|+|++|+++||+++....+. .....+
T Consensus 82 I~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~-~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 82 IQPGQSYVYNFTITGQRGTLWWHAHISWLR-ATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred cCCCCeEEEEEEecCCCeeEEEecCchhhh-ccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 999999999999766899999999998665 599999999997665556666789999999999998655433 233344
Q ss_pred CCCCCCCeEEEcccCC--------CCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeEEeEEEEc
Q 009054 187 HRLPSPDGILINGHGS--------NGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVH 258 (545)
Q Consensus 187 ~~~~~~~~~liNG~~~--------~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~ 258 (545)
....+++.++|||+.. ..+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|+.++++.|+
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~ 240 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIG 240 (539)
T ss_pred CCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEec
Confidence 4445779999999964 12479999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEEEeCCCCcceEEEEeecccC----CccceEEEEEecCCCCCCCCCCCCCC-CcccccccccccccccCCC-C
Q 009054 259 VGQSYSVLVTMDQPPQDFYIAVSTRFTN----KVLTSTGTLHYSNSAHPVSGPVPGGP-TTQIDWSLNQARSIRTNLT-A 332 (545)
Q Consensus 259 pgeR~dv~v~~~~~~g~y~~~~~~~~~~----~~~~~~ail~y~~~~~~~~~~~p~~p-~~~~~~~~~~~~~l~~~l~-~ 332 (545)
+||||||+|++++.+|+|||++.....+ ....+.|+|+|.++........+..| ..+...+......+. .+. +
T Consensus 241 ~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~-~~~~~ 319 (539)
T TIGR03389 241 PGQTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLR-SLNSA 319 (539)
T ss_pred CCCEEEEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcc-ccccc
Confidence 9999999999998889999999764322 23568899999876432111111111 111100000000111 010 1
Q ss_pred CCCCCCCCCCCCccccccceEEEeecccc----------c-cCCeEEEEEcceeecCCCCchhhhcccccccccccCCCC
Q 009054 333 SGPRPNPQGSYHYGLINISRTIKLESSAG----------Q-VNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQ 401 (545)
Q Consensus 333 ~~~~p~p~~~~~~~~~~~~~~~~l~~~~~----------~-~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~ 401 (545)
..+...| ...++++.+..... . ......|+|||++|..|+.|+|.+.+.++.+.+..+...
T Consensus 320 ~~~~~~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~ 391 (539)
T TIGR03389 320 QYPANVP--------VTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPA 391 (539)
T ss_pred CCCCCCC--------CCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCcc
Confidence 0000001 11333332222110 0 122467999999999899998765554444433222111
Q ss_pred CCC-----------CCCCccccceEEecCCCcEEEEEEEcCC---CCCCceeecCCceEEEeeccCcCCCCC-CCCCCCC
Q 009054 402 DQP-----------TGGNIYLDTSVMGADFRGFIEIVFQNHE---NIVQSWHIDGYNFWVVGMNGGVWTPAS-RNEYNLR 466 (545)
Q Consensus 402 ~~p-----------~~~~~~~~~~~~~~~~g~~v~~~i~N~~---~~~HP~HlHG~~F~Vl~~g~g~~~~~~-~~~~~~~ 466 (545)
..| .+...+.+++++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|++.. ...+|+.
T Consensus 392 ~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~ 471 (539)
T TIGR03389 392 NPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLV 471 (539)
T ss_pred CCCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccC
Confidence 111 0001233678899999999999999975 448999999999999999999887542 2368999
Q ss_pred CCCccceEEeCCCCEEEEEEEeCCccceeeeecchhhhhcceEEEEEEeCCCccccccCCCCCccccc
Q 009054 467 DAVSRCTTQVYPKSWTAIYVALDNVGMWNVRSEFWARQYLGQQFYLRVYSPVESIRDEYPIPKNALLC 534 (545)
Q Consensus 467 ~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c 534 (545)
||++|||+.|+++||++|||++||||.|+|||||++|+..||+++|.+.+.++...+.+++|++++.|
T Consensus 472 nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 472 DPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred CCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 99999999999999999999999999999999999999999999999887666565689999999999
No 9
>PLN02604 oxidoreductase
Probab=100.00 E-value=4.4e-97 Score=799.36 Aligned_cols=503 Identities=30% Similarity=0.521 Sum_probs=388.9
Q ss_pred HHHhhhcCCCeEEEEEEEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCC-CCCceEeeCCccCCCCCCC
Q 009054 20 FAIVARAESPYRFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSL-PEPFLISWNGVQQRRNSYE 98 (545)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l-~~~~~iH~HG~~~~~~~~~ 98 (545)
.+..+.+++++++|+|+|+++.+++||+++.+|+|||++|||+||+++||+|+|+|+|++ +++++|||||+++.+++++
T Consensus 14 ~~~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~ 93 (566)
T PLN02604 14 VLNFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWF 93 (566)
T ss_pred HHHhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccc
Confidence 333456778999999999999999999999999999999999999999999999999998 5899999999999988999
Q ss_pred CCCCcc-CCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchh
Q 009054 99 DGVYGT-TCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHN 177 (545)
Q Consensus 99 DGv~~~-q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~ 177 (545)
||++++ ||+|+||++++|+|++ +++||||||||...|+.+||+|+|||++++.++.++ ..+.|.+|+|+||+++...
T Consensus 94 DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~Dw~~~~~~ 171 (566)
T PLN02604 94 DGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTDWYHKSTY 171 (566)
T ss_pred cCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeeccccCCHH
Confidence 999998 9999999999999996 789999999999999999999999999876544455 3488999999999998764
Q ss_pred hHHHhhccC--CCCCCCCeEEEcccCCC-----------------------CceEEEeCCcEEEEEEEecCCCCeeeEEE
Q 009054 178 KLKSVLDRG--HRLPSPDGILINGHGSN-----------------------GASFTVEQGKTYRFRISNVGLQHSLNFRI 232 (545)
Q Consensus 178 ~~~~~~~~~--~~~~~~~~~liNG~~~~-----------------------~~~~~v~~G~~~rlRliNa~~~~~~~~~i 232 (545)
+....+... ....+++.++|||++.. .+.++|++|++|||||||+|..+.+.|+|
T Consensus 172 ~~~~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~si 251 (566)
T PLN02604 172 EQALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQI 251 (566)
T ss_pred HHHHhhccCCCccCCCCCceEEcCCCCCCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccccceEEEEE
Confidence 433322211 11246789999998531 13689999999999999999999999999
Q ss_pred eCceeEEEeecCccceeeEEeEEEEccCceEEEEEEeCCCCc-ceEEEEeeccc-CCccceEEEEEecCCCCCCCC--CC
Q 009054 233 QGHKMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQPPQ-DFYIAVSTRFT-NKVLTSTGTLHYSNSAHPVSG--PV 308 (545)
Q Consensus 233 ~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g-~y~~~~~~~~~-~~~~~~~ail~y~~~~~~~~~--~~ 308 (545)
+||+|+|||+||.+++|+++++|.|++||||||+|++++++| +|||++..... .+...+.|||+|.+....... ..
T Consensus 252 dgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~~~~~~~aIL~Y~~~~~~~~~~~~~ 331 (566)
T PLN02604 252 EGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNNTTPPGLAIFNYYPNHPRRSPPTVP 331 (566)
T ss_pred CCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCCCCcceeEEEEECCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999998775 89999864432 235678999999864321110 00
Q ss_pred CCCCC-cccccccccccccccCCCCCCCCCCCCCCCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhc
Q 009054 309 PGGPT-TQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLAD 387 (545)
Q Consensus 309 p~~p~-~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~ 387 (545)
+..+. .+......... .+......+ . ......++++.+.......++..+|+|||.+|..|+.|+|++.
T Consensus 332 ~~~~~~~~~~~~~~~~~----~~~~~~~~~--~----~~~~~~d~~~~~~~~~~~~~~~~~w~in~~~~~~p~~p~L~~~ 401 (566)
T PLN02604 332 PSGPLWNDVEPRLNQSL----AIKARHGYI--H----PPPLTSDRVIVLLNTQNEVNGYRRWSVNNVSFNLPHTPYLIAL 401 (566)
T ss_pred CCCCcccccchhhcchh----cccccccCc--C----CCCCCCCeEEEEeccccccCCeEEEEECcccCCCCCCchhHhh
Confidence 11110 00000000000 000000000 0 0112345566553322222456789999999998889988766
Q ss_pred ccccccccccCCCCCC-----------CCCCCccccceEEecCCCcEEEEEEEcCC------CCCCceeecCCceEEEee
Q 009054 388 YFKIGGVFRVGSIQDQ-----------PTGGNIYLDTSVMGADFRGFIEIVFQNHE------NIVQSWHIDGYNFWVVGM 450 (545)
Q Consensus 388 ~~~~~~~~~~~~~~~~-----------p~~~~~~~~~~~~~~~~g~~v~~~i~N~~------~~~HP~HlHG~~F~Vl~~ 450 (545)
+...++.|+.+..... +.+...+.+..++.++.|++||++|+|.+ ...||||||||+||||++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~ 481 (566)
T PLN02604 402 KENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGY 481 (566)
T ss_pred hhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEe
Confidence 5545555542211100 00012334677889999999999999985 457999999999999999
Q ss_pred ccCcCCCCC-CCCCCCCCCCccceEEeCCCCEEEEEEEeCCccceeeeecchhhhhcceEEEEEEeCCCccccccCCCCC
Q 009054 451 NGGVWTPAS-RNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMWNVRSEFWARQYLGQQFYLRVYSPVESIRDEYPIPK 529 (545)
Q Consensus 451 g~g~~~~~~-~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~ 529 (545)
|.|.|++.. ...+|+.||++|||+.|++++|++|||++||||.|+|||||++|+..||+++|.+. ++ +..++|.
T Consensus 482 G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~-~~----~~~~~p~ 556 (566)
T PLN02604 482 GEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG-IE----RVGKLPS 556 (566)
T ss_pred cCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeC-hh----hccCCCC
Confidence 999887543 34689999999999999999999999999999999999999999999999999754 33 3668899
Q ss_pred cccccccccC
Q 009054 530 NALLCGRAKG 539 (545)
Q Consensus 530 ~~~~c~~~~~ 539 (545)
+++.|+..+|
T Consensus 557 ~~~~C~~~~~ 566 (566)
T PLN02604 557 SIMGCGESKG 566 (566)
T ss_pred CcCccccCCC
Confidence 9999987654
No 10
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=4.7e-97 Score=797.22 Aligned_cols=497 Identities=29% Similarity=0.533 Sum_probs=380.0
Q ss_pred cCCCeEEEEEEEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCC-CCceEeeCCccCCCCCCCCCCCcc
Q 009054 26 AESPYRFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLP-EPFLISWNGVQQRRNSYEDGVYGT 104 (545)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~ 104 (545)
+.+++++|+|+++++.+.+||+++.+++|||++|||+||+++||+|+|+|+|+|+ ++++|||||++|.+++++||++++
T Consensus 19 ~~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gv 98 (574)
T PLN02191 19 ASAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGV 98 (574)
T ss_pred hccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCcc
Confidence 3467899999999999999999999999999999999999999999999999997 789999999999999999999999
Q ss_pred -CCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchhhHHHhh
Q 009054 105 -TCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHNKLKSVL 183 (545)
Q Consensus 105 -q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~ 183 (545)
||+|+||++|+|+|++ +++||||||||...|+.+||+|+|||+++.....++ .+|+|++|+++||+++........+
T Consensus 99 tq~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~ 176 (574)
T PLN02191 99 TQCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPSQELGL 176 (574)
T ss_pred ccCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHHHHHhh
Confidence 9999999999999996 689999999999999999999999998754322222 3489999999999997543222111
Q ss_pred cc--CCCCCCCCeEEEcccCCC-------------------------Cc-eEEEeCCcEEEEEEEecCCCCeeeEEEeCc
Q 009054 184 DR--GHRLPSPDGILINGHGSN-------------------------GA-SFTVEQGKTYRFRISNVGLQHSLNFRIQGH 235 (545)
Q Consensus 184 ~~--~~~~~~~~~~liNG~~~~-------------------------~~-~~~v~~G~~~rlRliNa~~~~~~~~~i~gh 235 (545)
.. ......++.+||||++.. .+ .++|++||+|||||||+|+...+.|+|+||
T Consensus 177 ~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH 256 (574)
T PLN02191 177 SSKPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGH 256 (574)
T ss_pred ccCCCCcCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCC
Confidence 11 112246788999988631 12 599999999999999999999999999999
Q ss_pred eeEEEeecCccceeeEEeEEEEccCceEEEEEEeCCCC-cceEEEEeecccC-CccceEEEEEecCCCCCC--CCCCCCC
Q 009054 236 KMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQPP-QDFYIAVSTRFTN-KVLTSTGTLHYSNSAHPV--SGPVPGG 311 (545)
Q Consensus 236 ~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~-g~y~~~~~~~~~~-~~~~~~ail~y~~~~~~~--~~~~p~~ 311 (545)
+|+|||+||++++|+.+++|.|++||||||+|++++++ ++||||+...... ......|||+|.+..... +.+.|..
T Consensus 257 ~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~ 336 (574)
T PLN02191 257 KLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKPNTTQALTILNYVTAPASKLPSSPPPVT 336 (574)
T ss_pred eEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCCCCCCceEEEEECCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999876 5899999754322 123357999997755321 1111111
Q ss_pred CC-cccccccccccccccCCCCCCCCCCCCCCCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccc
Q 009054 312 PT-TQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFK 390 (545)
Q Consensus 312 p~-~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~ 390 (545)
|. .+... .......+......+.+.. ...++++.+.... ...+..+|++||.+|..|..|+|++.+.+
T Consensus 337 p~~~~~~~----~~~~~~~~~~~~~~~~~p~------~~~~~~~~~~~~~-~~~~~~~~~~n~~s~~~p~~P~L~~~~~~ 405 (574)
T PLN02191 337 PRWDDFER----SKNFSKKIFSAMGSPSPPK------KYRKRLILLNTQN-LIDGYTKWAINNVSLVTPATPYLGSVKYN 405 (574)
T ss_pred Ccccccch----hhcccccccccccCCCCCC------cccceEEEecccc-eeCCeEEEEECcccCcCCCcchHHHHhhc
Confidence 11 11100 0011111110000011110 1124444443211 12355689999999998999988876655
Q ss_pred cccccccCCCCC---------CCC-CCCccccceEEecCCCcEEEEEEEcCC------CCCCceeecCCceEEEeeccCc
Q 009054 391 IGGVFRVGSIQD---------QPT-GGNIYLDTSVMGADFRGFIEIVFQNHE------NIVQSWHIDGYNFWVVGMNGGV 454 (545)
Q Consensus 391 ~~~~~~~~~~~~---------~p~-~~~~~~~~~~~~~~~g~~v~~~i~N~~------~~~HP~HlHG~~F~Vl~~g~g~ 454 (545)
.++.|+.+.... .+. ....+.+++++.++.|++|||+|+|.+ ...||||||||+||||++|.|.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~ 485 (574)
T PLN02191 406 LKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGK 485 (574)
T ss_pred cCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCC
Confidence 555444321110 000 011234677889999999999999975 6789999999999999999999
Q ss_pred CCCCC-CCCCCCCCCCccceEEeCCCCEEEEEEEeCCccceeeeecchhhhhcceEEEEEEeCCCccccccCCCCCcccc
Q 009054 455 WTPAS-RNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMWNVRSEFWARQYLGQQFYLRVYSPVESIRDEYPIPKNALL 533 (545)
Q Consensus 455 ~~~~~-~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~ 533 (545)
|++.. ...+|+.||++|||+.|+++||++|||++||||.|+|||||++|...||+++|. +.++ +.+++|++++.
T Consensus 486 ~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~-e~~~----~~~~~p~~~~~ 560 (574)
T PLN02191 486 FKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFA-EGLN----RIGKIPDEALG 560 (574)
T ss_pred CCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEe-cChh----hccCCCcchhh
Confidence 98632 235899999999999999999999999999999999999999999999999994 3333 24558899999
Q ss_pred cccccCC
Q 009054 534 CGRAKGK 540 (545)
Q Consensus 534 c~~~~~~ 540 (545)
|+.+++.
T Consensus 561 C~~~~~~ 567 (574)
T PLN02191 561 CGLTKQF 567 (574)
T ss_pred hhccccc
Confidence 9977654
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=1e-96 Score=794.37 Aligned_cols=488 Identities=30% Similarity=0.562 Sum_probs=378.5
Q ss_pred eEEEEEEEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCC-CCceEeeCCccCCCCCCCCCCCcc-CCc
Q 009054 30 YRFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLP-EPFLISWNGVQQRRNSYEDGVYGT-TCP 107 (545)
Q Consensus 30 ~~~~~l~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~-q~~ 107 (545)
+++|+|+|+++.+++||+.+.+|+|||++|||+|++++||+|+|+|+|+|. ++++|||||++|.+++++||++++ ||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 478999999999999999999999999999999999999999999999995 889999999999999999999999 999
Q ss_pred CCCCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchhhHHHhhccC-
Q 009054 108 IPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHNKLKSVLDRG- 186 (545)
Q Consensus 108 i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~- 186 (545)
|+||++|+|+|++ +++||||||||...|+.+||+|+|||+++..+..++ ..|+|++|+|+||+++...+....+...
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999996 689999999999999999999999999875444444 3489999999999998654332222211
Q ss_pred -CCCCCCCeEEEcccCCC-------------------------CceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEE
Q 009054 187 -HRLPSPDGILINGHGSN-------------------------GASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLV 240 (545)
Q Consensus 187 -~~~~~~~~~liNG~~~~-------------------------~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~vi 240 (545)
.....++.++|||++.. ...++|++|++|||||||+|..+.+.|+|+||+|+||
T Consensus 159 ~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VI 238 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVV 238 (541)
T ss_pred CcCCCCCcceEECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEE
Confidence 11246789999998531 1248999999999999999999999999999999999
Q ss_pred eecCccceeeEEeEEEEccCceEEEEEEeCCCC-cceEEEEeeccc-CCccceEEEEEecCCCCCCC--CCCCCCCC-cc
Q 009054 241 EVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQPP-QDFYIAVSTRFT-NKVLTSTGTLHYSNSAHPVS--GPVPGGPT-TQ 315 (545)
Q Consensus 241 a~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~-g~y~~~~~~~~~-~~~~~~~ail~y~~~~~~~~--~~~p~~p~-~~ 315 (545)
|+||++++|+.+++|.|++||||||+|++++.+ |+|||++..... .+...+.|||+|.+...... .+.+..|. .+
T Consensus 239 a~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~ 318 (541)
T TIGR03388 239 EADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDD 318 (541)
T ss_pred EeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccc
Confidence 999999999999999999999999999999766 489999876543 22456789999987543210 11111121 11
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhccccccccc
Q 009054 316 IDWSLNQARSIRTNLTASGPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVF 395 (545)
Q Consensus 316 ~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~ 395 (545)
.... ......+......+.+. ...++++.+.......++..+|++||.+|..|..|+|.+.++...+++
T Consensus 319 ~~~~----~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~~~~ 387 (541)
T TIGR03388 319 FDRS----KAFSLAIKAAMGSPKPP-------ETSDRRIVLLNTQNKINGYTKWAINNVSLTLPHTPYLGSLKYNLLNAF 387 (541)
T ss_pred cchh----hccchhhhccccCCCCC-------CCCCcEEEEeccCcccCceEEEEECcccCCCCCccHHHHHhhcCCccc
Confidence 0000 00000000000011111 124555444332222245677999999999889998877655444444
Q ss_pred ccCCCCC----------CCCCCCccccceEEecCCCcEEEEEEEcCC------CCCCceeecCCceEEEeeccCcCCCC-
Q 009054 396 RVGSIQD----------QPTGGNIYLDTSVMGADFRGFIEIVFQNHE------NIVQSWHIDGYNFWVVGMNGGVWTPA- 458 (545)
Q Consensus 396 ~~~~~~~----------~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~------~~~HP~HlHG~~F~Vl~~g~g~~~~~- 458 (545)
+...... .+.....+.++.++.++.|++||++|+|.+ ...||||||||+||||++|.|.|++.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~ 467 (541)
T TIGR03388 388 DQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGV 467 (541)
T ss_pred cCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCccc
Confidence 3221100 011112355678899999999999999974 45799999999999999999988753
Q ss_pred CCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccceeeeecchhhhhcceEEEEEEeCCCccccccCCCCCcccccc
Q 009054 459 SRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMWNVRSEFWARQYLGQQFYLRVYSPVESIRDEYPIPKNALLCG 535 (545)
Q Consensus 459 ~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~ 535 (545)
....+|+.||++|||+.|+++||++|||++||||.|+|||||++|+..||+++|... ++ +.+++|+++++||
T Consensus 468 ~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-~~----~~~~~P~~~~~C~ 539 (541)
T TIGR03388 468 DEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-VE----KVGKLPKEALGCG 539 (541)
T ss_pred CcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc-cc----ccCCCCccccCCC
Confidence 223689999999999999999999999999999999999999999999999999654 33 3567999999997
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=5.4e-94 Score=770.96 Aligned_cols=476 Identities=24% Similarity=0.384 Sum_probs=366.0
Q ss_pred EEEEEEEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCC-CCceEeeCCccCCCCCCCCCCCcc-CCcC
Q 009054 31 RFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLP-EPFLISWNGVQQRRNSYEDGVYGT-TCPI 108 (545)
Q Consensus 31 ~~~~l~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~-q~~i 108 (545)
-.|+|+|+++.+++||+.+.+++|||++|||+||+++||+|+|+|+|+|+ ++|+|||||++|.+++++||+|++ ||+|
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 46899999999999999999999999999999999999999999999996 899999999999999999999999 9999
Q ss_pred CCCCeEEEEEEeC-CcceeeeeecCchhhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchhhHHHhhccCC
Q 009054 109 PPGKNFTYILQVK-DQIGSYFYFPSVGFQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHNKLKSVLDRGH 187 (545)
Q Consensus 109 ~pG~~~~y~~~~~-~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~~ 187 (545)
+||++|+|+|+++ +++||||||||...|+. ||+|+|||++++..+.. .|+|++|+|+||+++...++...+....
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~-~l~G~lIV~~~~~~~~~---~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 164 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAV-TAFGPLIVEDCEPPPYK---YDDERILLVSDFFSATDEEIEQGLLSTP 164 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhh-cceeEEEEccCCccCCC---ccCcEEEEEeCCCCCCHHHHHhhhhccC
Confidence 9999999999974 58999999999999986 59999999986543333 3889999999999987766543322221
Q ss_pred --CCCCCCeEEEcccCC--------------CCceEEEeCCcEEEEEEEecCCCCeeeEEEeCce-eEEEeecCccceee
Q 009054 188 --RLPSPDGILINGHGS--------------NGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHK-MKLVEVEGTHTIQT 250 (545)
Q Consensus 188 --~~~~~~~~liNG~~~--------------~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~-~~via~DG~~~~p~ 250 (545)
....++.+||||+.. ..+.++|++||+|||||||+|....+.|+|+||+ |+|||+||++++|+
T Consensus 165 ~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~ 244 (538)
T TIGR03390 165 FTWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPA 244 (538)
T ss_pred CccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCce
Confidence 124568999999963 1267999999999999999999999999999999 99999999999999
Q ss_pred EEeEEEEccCceEEEEEEeCCC-------CcceEEEEeecccCCccceEEEEEecCCCCCCCCCCCCCCCcccccccccc
Q 009054 251 TYSSLDVHVGQSYSVLVTMDQP-------PQDFYIAVSTRFTNKVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQA 323 (545)
Q Consensus 251 ~~~~v~l~pgeR~dv~v~~~~~-------~g~y~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~ 323 (545)
.+++|.|++||||||+|++++. +|+||||+.....++...+.|+|+|.++........|..|..........+
T Consensus 245 ~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~ 324 (538)
T TIGR03390 245 KIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDW 324 (538)
T ss_pred EeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhh
Confidence 9999999999999999999974 489999998655455566899999986543221111111110000000001
Q ss_pred cccccCCCCCCCCCCCCCCCCccccccceEEEeeccccc--cCCeEEEEEcceeecC--CCCchhhhcccccccccccCC
Q 009054 324 RSIRTNLTASGPRPNPQGSYHYGLINISRTIKLESSAGQ--VNGKQRYAVNSVSFIP--ADTPLKLADYFKIGGVFRVGS 399 (545)
Q Consensus 324 ~~l~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~--~~g~~~~~iNg~~f~~--~~~P~l~~~~~~~~~~~~~~~ 399 (545)
.+ ..+.+......+ .++. ....++++.+...+.. .++..+|++||.+|.. ++.|+|...+.+. +....
T Consensus 325 ~~--~~l~pl~~~~~~--~~~~-~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~---~~~~~ 396 (538)
T TIGR03390 325 LE--YELEPLSEENNQ--DFPT-LDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENG---LPATP 396 (538)
T ss_pred hh--eeeEecCccccC--CCCC-CCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCC---CCcCC
Confidence 11 011111100000 0000 1235677766655421 2466889999999985 7889876544311 00000
Q ss_pred CCC-CCCCCCccccceEEecCCCcEEEEEEEcCC--------CCCCceeecCCceEEEeeccCcCCCCC-CCCCCCCCCC
Q 009054 400 IQD-QPTGGNIYLDTSVMGADFRGFIEIVFQNHE--------NIVQSWHIDGYNFWVVGMNGGVWTPAS-RNEYNLRDAV 469 (545)
Q Consensus 400 ~~~-~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~--------~~~HP~HlHG~~F~Vl~~g~g~~~~~~-~~~~~~~~p~ 469 (545)
..+ .+.......+++++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++.. ...+++.||+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~ 476 (538)
T TIGR03390 397 NYTAALANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPV 476 (538)
T ss_pred CcccccccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCC
Confidence 000 000001123566788999999999999974 578999999999999999999998643 2357888999
Q ss_pred ccceEEeC----------CCCEEEEEEEeCCccceeeeecchhhhhcceEEEEEEeCCC
Q 009054 470 SRCTTQVY----------PKSWTAIYVALDNVGMWNVRSEFWARQYLGQQFYLRVYSPV 518 (545)
Q Consensus 470 ~rDTv~vp----------~~~~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~ 518 (545)
+|||+.|| +++|++|||++||||.|+|||||.+|...||+++|.|.+.+
T Consensus 477 rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~ 535 (538)
T TIGR03390 477 LRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDAE 535 (538)
T ss_pred eecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCChH
Confidence 99999996 78999999999999999999999999999999999997665
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=4.7e-80 Score=661.96 Aligned_cols=427 Identities=22% Similarity=0.309 Sum_probs=322.5
Q ss_pred EEEEEEEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCcc-CCcCC
Q 009054 31 RFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGT-TCPIP 109 (545)
Q Consensus 31 ~~~~l~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~-q~~i~ 109 (545)
++|+|++++..+.++|+.+.+|+|||++|||+||+++||+|+|+|+|+|+++++|||||+++. +.+||+|++ ||+|+
T Consensus 46 ~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~--~~~DGvP~vt~~~I~ 123 (587)
T TIGR01480 46 TEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLP--FQMDGVPGVSFAGIA 123 (587)
T ss_pred ceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCC--ccccCCCcccccccC
Confidence 799999999999999999999999999999999999999999999999999999999999874 679999999 99999
Q ss_pred CCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchhhHHHhhc-----
Q 009054 110 PGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHNKLKSVLD----- 184 (545)
Q Consensus 110 pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~----- 184 (545)
||++|+|+|++ .++||||||||...|+++||+|+|||++++.++..+ |+|++|+|+||++....++...+.
T Consensus 124 PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~~~---D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~ 199 (587)
T TIGR01480 124 PGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPVRA---DREHVVLLSDWTDLDPAALFRKLKVMAGH 199 (587)
T ss_pred CCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccCCC---CceEEEEeeecccCCHHHHHHhhhccccc
Confidence 99999999997 679999999999999999999999999865444444 899999999999765433321110
Q ss_pred -----------------cCC---------CC-------------CCCCeEEEcccCC-CCceEEEeCCcEEEEEEEecCC
Q 009054 185 -----------------RGH---------RL-------------PSPDGILINGHGS-NGASFTVEQGKTYRFRISNVGL 224 (545)
Q Consensus 185 -----------------~~~---------~~-------------~~~~~~liNG~~~-~~~~~~v~~G~~~rlRliNa~~ 224 (545)
.|. .. .....+||||+.. ..+.+.+++|++|||||||+|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~~~~~~~~v~~G~rvRLR~INas~ 279 (587)
T TIGR01480 200 DNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTPAGNWTGLFRPGEKVRLRFINGSA 279 (587)
T ss_pred ccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccCCCCceEEECCCCEEEEEEEecCC
Confidence 010 00 0113489999985 2356899999999999999999
Q ss_pred CCeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceEEEEEEeCCCCcceEEEEeecccCCccceEEEEEecCCCCCC
Q 009054 225 QHSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTRFTNKVLTSTGTLHYSNSAHPV 304 (545)
Q Consensus 225 ~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~~~~~~~~~~ail~y~~~~~~~ 304 (545)
.+.+.|+|+||+|+||++||++++|+.++++.|+|||||||+|+.+ ..|.|+|++..... ...+.++|++.+....+
T Consensus 280 ~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~-~~g~~~i~a~~~~~--~~~~~~~l~~~~~~~~~ 356 (587)
T TIGR01480 280 MTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPT-GDDAFTIFAQDSDR--TGYARGTLAVRLGLTAP 356 (587)
T ss_pred CceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecC-CCceEEEEEEecCC--CceEEEEEecCCCCCCC
Confidence 9999999999999999999999999999999999999999999987 46899999875432 34577888886542111
Q ss_pred CCCCCCCCC---ccccc-c---------ccc--c--cccc-------------cCCCC--CCC------------CCCCC
Q 009054 305 SGPVPGGPT---TQIDW-S---------LNQ--A--RSIR-------------TNLTA--SGP------------RPNPQ 340 (545)
Q Consensus 305 ~~~~p~~p~---~~~~~-~---------~~~--~--~~l~-------------~~l~~--~~~------------~p~p~ 340 (545)
.++++..|. .+... . ... . .+.. .+... ..+ ...|.
T Consensus 357 ~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (587)
T TIGR01480 357 VPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMPM 436 (587)
T ss_pred CCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCcccccCCccccccccCcc
Confidence 111111110 01000 0 000 0 0000 00000 000 00000
Q ss_pred C--------------------CCC-----ccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhccccccccc
Q 009054 341 G--------------------SYH-----YGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVF 395 (545)
Q Consensus 341 ~--------------------~~~-----~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~ 395 (545)
. ++. ......+|++.+..... .....|+|||+.|.+ ..
T Consensus 437 ~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~--m~~~~wtiNG~~~~~-~~-------------- 499 (587)
T TIGR01480 437 DRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGN--MERFAWSFDGEAFGL-KT-------------- 499 (587)
T ss_pred cccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCC--CceeEEEECCccCCC-CC--------------
Confidence 0 000 00123455555544211 134569999987542 11
Q ss_pred ccCCCCCCCCCCCccccceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEE
Q 009054 396 RVGSIQDQPTGGNIYLDTSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQ 475 (545)
Q Consensus 396 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~ 475 (545)
.+.++.|++|+|.|.|.+.+.|||||||+.|+++..++ .+ +.+|||+.
T Consensus 500 -------------------pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G-~~------------~~~~dTv~ 547 (587)
T TIGR01480 500 -------------------PLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQG-EF------------QVRKHTVD 547 (587)
T ss_pred -------------------ceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCC-cc------------cccCCcee
Confidence 14589999999999999999999999999999987542 21 35789999
Q ss_pred eCCCCEEEEEEEeCCccceeeeecchhhhhcceEEEEEEe
Q 009054 476 VYPKSWTAIYVALDNVGMWNVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 476 vp~~~~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~ 515 (545)
|+|++++.++|++||||.|+||||++.|++.|||..|+|.
T Consensus 548 V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 548 VPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred eCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 9999999999999999999999999999999999999883
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=7.9e-80 Score=655.84 Aligned_cols=411 Identities=19% Similarity=0.232 Sum_probs=304.9
Q ss_pred eEEEEEEEEEEEecCCC-eeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcC
Q 009054 30 YRFFTWNVTYGDIYPLG-VRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPI 108 (545)
Q Consensus 30 ~~~~~l~~~~~~~~~dG-~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i 108 (545)
...|+|+++++..+++| ....+|+|||++|||+||+++||+|+|+|+|+|+++|+|||||+++. +.+||+| ||+|
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~--~~~DG~p--q~~I 120 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVP--GEVDGGP--QGII 120 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCC--CccCCCC--CCCC
Confidence 44699999999999985 45579999999999999999999999999999999999999999986 4599998 8999
Q ss_pred CCCCeEEEEEEeCCcceeeeeecCc----hhhhhcCeeeEEEEeCCCCCCCCCC--CCCCcceEEEeeeeecchhhHHHh
Q 009054 109 PPGKNFTYILQVKDQIGSYFYFPSV----GFQKAAGGFGGIRILSRPLIPVPFP--EPAGDFTVLIGDWYKANHNKLKSV 182 (545)
Q Consensus 109 ~pG~~~~y~~~~~~~~Gt~wYH~H~----~~~~~~Gl~G~liV~~~~~~~~~~~--~~~~e~~l~~~d~~~~~~~~~~~~ 182 (545)
+||++|+|+|++++++||||||||. ..|+++||+|+|||++++....+++ ...+|++|++|||+++.++++...
T Consensus 121 ~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~ 200 (523)
T PRK10965 121 APGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQ 200 (523)
T ss_pred CCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceecc
Confidence 9999999999976568999999997 4999999999999999765432222 245699999999999876655332
Q ss_pred hccC--CCCCCCCeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEE-eCceeEEEeecCccc-eeeEEeEEEEc
Q 009054 183 LDRG--HRLPSPDGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRI-QGHKMKLVEVEGTHT-IQTTYSSLDVH 258 (545)
Q Consensus 183 ~~~~--~~~~~~~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i-~gh~~~via~DG~~~-~p~~~~~v~l~ 258 (545)
.+.. .....++.++|||+.+ |.+.++ +++|||||||+|+.+.+.|++ ++|+|+|||.||+++ +|+.+++|.|+
T Consensus 201 ~~~~~~~~g~~gd~~lVNG~~~--p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~la 277 (523)
T PRK10965 201 LDVMTAAVGWFGDTLLTNGAIY--PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPVKVSELPIL 277 (523)
T ss_pred ccccccccCccCCeEEECCccc--ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCccEeCeEEEC
Confidence 2211 1234678999999998 998886 579999999999999999998 899999999999986 89999999999
Q ss_pred cCceEEEEEEeCCCCcceEEEEeecccC-----CccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCC
Q 009054 259 VGQSYSVLVTMDQPPQDFYIAVSTRFTN-----KVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTAS 333 (545)
Q Consensus 259 pgeR~dv~v~~~~~~g~y~~~~~~~~~~-----~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~ 333 (545)
|||||||+|+++ ..++|.+........ .......++++.........++|... ...
T Consensus 278 pGeR~dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l------------------~~~ 338 (523)
T PRK10965 278 MGERFEVLVDTS-DGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSL------------------ASL 338 (523)
T ss_pred ccceEEEEEEcC-CCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhh------------------ccC
Confidence 999999999998 467888887633211 01112345555432211111121100 000
Q ss_pred CCCCCCCCCCCccccccceEEEeecc-------------------------------c--------cc---cCCe-----
Q 009054 334 GPRPNPQGSYHYGLINISRTIKLESS-------------------------------A--------GQ---VNGK----- 366 (545)
Q Consensus 334 ~~~p~p~~~~~~~~~~~~~~~~l~~~-------------------------------~--------~~---~~g~----- 366 (545)
.+.+.+.. ...|++.|... + .. ..+.
T Consensus 339 ~~~~~~~~-------~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (523)
T PRK10965 339 PALPSLEG-------LTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFH 411 (523)
T ss_pred CCCCcccc-------cceeEEEEeeccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 00000000 00111111100 0 00 0000
Q ss_pred EEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcEEEEEEEcCCC-CCCceeecCCce
Q 009054 367 QRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFIEIVFQNHEN-IVQSWHIDGYNF 445 (545)
Q Consensus 367 ~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~-~~HP~HlHG~~F 445 (545)
..|+|||++|... .| .+.++.|++++|.|.|.+. +.|||||||++|
T Consensus 412 ~~~~ING~~~~~~-~~--------------------------------~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F 458 (523)
T PRK10965 412 HANKINGKAFDMN-KP--------------------------------MFAAKKGQYERWVISGVGDMMLHPFHIHGTQF 458 (523)
T ss_pred ccccCCCeECCCC-Cc--------------------------------ceecCCCCEEEEEEEeCCCCCccCeEEeCcEE
Confidence 1258888887532 11 1468999999999999984 689999999999
Q ss_pred EEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeC----CccceeeeecchhhhhcceEEEEEEe
Q 009054 446 WVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALD----NVGMWNVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 446 ~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~ad----npG~w~~HCHil~H~d~GMm~~~~V~ 515 (545)
|||++++.+. ...++.|||||.|++ +.++|+++++ ++|.||||||||+|||.|||..|+|.
T Consensus 459 ~Vl~~~g~~~--------~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 459 RILSENGKPP--------AAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred EEEEecCCCC--------CccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEeC
Confidence 9999975321 123468999999988 6677766654 57799999999999999999999984
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=4.1e-78 Score=637.51 Aligned_cols=400 Identities=19% Similarity=0.193 Sum_probs=297.2
Q ss_pred EEEEEEEEEEecCC-CeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCC
Q 009054 32 FFTWNVTYGDIYPL-GVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPP 110 (545)
Q Consensus 32 ~~~l~~~~~~~~~d-G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~p 110 (545)
.++|+++.+...++ |..+.+|+|||++||||||+++||+|+|+|+|+|+++|+|||||+++... .+||++ ++|+|
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~---~~I~P 122 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA---RMMSP 122 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc---ccCCC
Confidence 37999999999988 57889999999999999999999999999999999999999999998754 567765 78999
Q ss_pred CCeEEEEEEeCCcceeeeeecCch----hhhhcCeeeEEEEeCCCCCCCCCC--CCCCcceEEEeeeeecchhhHHHhhc
Q 009054 111 GKNFTYILQVKDQIGSYFYFPSVG----FQKAAGGFGGIRILSRPLIPVPFP--EPAGDFTVLIGDWYKANHNKLKSVLD 184 (545)
Q Consensus 111 G~~~~y~~~~~~~~Gt~wYH~H~~----~~~~~Gl~G~liV~~~~~~~~~~~--~~~~e~~l~~~d~~~~~~~~~~~~~~ 184 (545)
|++|+|+|++.+++||||||||.+ .|+++||+|+|||+++.+.+.+++ ...+|++|+++||.++..++.... .
T Consensus 123 G~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~-~ 201 (471)
T PRK10883 123 NADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN-E 201 (471)
T ss_pred CCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc-c
Confidence 999999999766799999999976 599999999999998755433332 234599999999999865543211 1
Q ss_pred cCCCCCCCCeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEE-eCceeEEEeecCccc-eeeEEeEEEEccCce
Q 009054 185 RGHRLPSPDGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRI-QGHKMKLVEVEGTHT-IQTTYSSLDVHVGQS 262 (545)
Q Consensus 185 ~~~~~~~~~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i-~gh~~~via~DG~~~-~p~~~~~v~l~pgeR 262 (545)
.......++.+||||+.+ |.++|++| +|||||||+|+.+.+.|+| ++|+|+|||+||+.+ +|+.++++.|+||||
T Consensus 202 ~~~~g~~gd~~lvNG~~~--p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGeR 278 (471)
T PRK10883 202 PGSGGFVGDTLLVNGVQS--PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGER 278 (471)
T ss_pred cccCCccCCeeEECCccC--CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCCCe
Confidence 122234678999999999 99999985 8999999999999999999 899999999997775 899999999999999
Q ss_pred EEEEEEeCCCCcceEEEEeecccCC-cc----------ceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCC
Q 009054 263 YSVLVTMDQPPQDFYIAVSTRFTNK-VL----------TSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLT 331 (545)
Q Consensus 263 ~dv~v~~~~~~g~y~~~~~~~~~~~-~~----------~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~ 331 (545)
|||+|++++ .+.+.+++....... .. ....+++...... .+..+ ..++..+.
T Consensus 279 ~dvlVd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----------~~~p~~l~ 341 (471)
T PRK10883 279 REILVDMSN-GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGL-----LPLVT-----------DNLPMRLL 341 (471)
T ss_pred EEEEEECCC-CceEEEECCCccccccccccccCCccccccceeEEEEcccc-----ccCCC-----------CcCChhhc
Confidence 999999974 456666653110000 00 0011111111000 00000 00000111
Q ss_pred CCCCCCCCCCCCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccc
Q 009054 332 ASGPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYL 411 (545)
Q Consensus 332 ~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~ 411 (545)
... + . .......+++.+.. ..|.|||++|.+...+
T Consensus 342 ~~~--~-~-----~~~~~~~~~~~l~~--------~~~~INg~~~~~~~~~----------------------------- 376 (471)
T PRK10883 342 PDE--I-M-----EGSPIRSREISLGD--------DLPGINGALWDMNRID----------------------------- 376 (471)
T ss_pred CCC--C-C-----CCCCcceEEEEecC--------CcCccCCcccCCCcce-----------------------------
Confidence 000 0 0 00111223444431 1378999998542111
Q ss_pred cceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCc
Q 009054 412 DTSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNV 491 (545)
Q Consensus 412 ~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnp 491 (545)
+.++.|++++|.|.|. +.|||||||++||||++++.... ..+..|||||.|+ +.++|+++++++
T Consensus 377 ----~~~~~g~~e~W~~~n~--~~HP~HlHg~~FqVl~~~G~~~~--------~~~~gwkDTV~v~--~~v~i~~~f~~~ 440 (471)
T PRK10883 377 ----VTAQQGTWERWTVRAD--MPQAFHIEGVMFLIRNVNGAMPF--------PEDRGWKDTVWVD--GQVELLVYFGQP 440 (471)
T ss_pred ----eecCCCCEEEEEEECC--CCcCEeECCccEEEEEecCCCCC--------ccccCcCcEEEcC--CeEEEEEEecCC
Confidence 3578999999999886 68999999999999999653211 1234799999996 469999999988
Q ss_pred c----ceeeeecchhhhhcceEEEEEEeCC
Q 009054 492 G----MWNVRSEFWARQYLGQQFYLRVYSP 517 (545)
Q Consensus 492 G----~w~~HCHil~H~d~GMm~~~~V~~~ 517 (545)
| .||||||||+|||.|||..|+|.++
T Consensus 441 ~~~~~~~m~HCHiLeHeD~GMM~~~~V~~~ 470 (471)
T PRK10883 441 SWAHFPFLFYSQTLEMADRGSIGQLLVNPA 470 (471)
T ss_pred CCCCCcEEeecccccccccCCccCeEEecC
Confidence 7 8999999999999999999999653
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.8e-62 Score=516.12 Aligned_cols=412 Identities=20% Similarity=0.215 Sum_probs=296.7
Q ss_pred EEEEEEEEEEec-CCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCcc-CCcCC
Q 009054 32 FFTWNVTYGDIY-PLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGT-TCPIP 109 (545)
Q Consensus 32 ~~~l~~~~~~~~-~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~-q~~i~ 109 (545)
+..+........ .++.....|.|||++|||+||+++||+|+|+++|+|.++|++||||+.++ +.+||++.. |+.+.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p--~~~dG~~~~~~~~~~ 111 (451)
T COG2132 34 RTFLTAQRAQLAFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVP--GEMDGVPPLTQIPPG 111 (451)
T ss_pred ceEEeecccceeeecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccC--ccccCCCcccccCCC
Confidence 334444444333 45777889999999999999999999999999999988899999998665 789999888 99999
Q ss_pred CCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchhhHHHhhccCCCC
Q 009054 110 PGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHNKLKSVLDRGHRL 189 (545)
Q Consensus 110 pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~~~~ 189 (545)
||++++|.|+. +++||||||+|.+.|+++||+|++||++....+..+ |++..++..+|.........+. ......
T Consensus 112 ~~~~~~y~f~~-~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~~~---d~~~~i~~~~~~~~~~~~~~~~-~~~~~~ 186 (451)
T COG2132 112 PGETPTYTFTQ-DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPLGV---DDEPVILQDDWLDEDGTDLYQE-GPAMGG 186 (451)
T ss_pred CCCcEEEeecC-CCCcceEeccCCCchhhcccceeEEEeCCCCCCCCC---CceEEEEEeeeecCCCCccccC-CccccC
Confidence 99999999995 567799999999999999999999999976554433 6677777777775543332221 011233
Q ss_pred CCCCeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceEEEEEEe
Q 009054 190 PSPDGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTM 269 (545)
Q Consensus 190 ~~~~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~ 269 (545)
..++..+|||+.. +.+.++. ++|||||+|+++.+.+.+++.+++|+||++||.+++|..++.+.|+||||+||++++
T Consensus 187 ~~g~~~~vnG~~~--p~~~~~~-g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~ 263 (451)
T COG2132 187 FPGDTLLVNGAIL--PFKAVPG-GVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDM 263 (451)
T ss_pred CCCCeEEECCCcc--ceeecCC-CeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEc
Confidence 4568999999887 7777666 469999999998898899999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEeecccCCccceEEEEEecCCCCCC---CCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCcc
Q 009054 270 DQPPQDFYIAVSTRFTNKVLTSTGTLHYSNSAHPV---SGPVPGGPTTQIDWSLNQARSIRTNLTASGPRPNPQGSYHYG 346 (545)
Q Consensus 270 ~~~~g~y~~~~~~~~~~~~~~~~ail~y~~~~~~~---~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~ 346 (545)
++ .+.+.+.+..... .....+.........+. .......+..+. .. ..... .+.... ..+
T Consensus 264 ~~-~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~-~~~~~---~~~~~~--~~~------- 326 (451)
T COG2132 264 ND-GGAVTLTALGEDM--PDTLKGFRAPNPILTPSYPVLNGRVGAPTGDM-AD-HAPVG---LLVTIL--VEP------- 326 (451)
T ss_pred CC-CCeEEEEeccccC--CceeeeeeccccccccccccccccccCCCcch-hh-ccccc---cchhhc--CCC-------
Confidence 94 6788888764111 11111222111111000 000000010000 00 00000 000000 000
Q ss_pred ccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcEEEE
Q 009054 347 LINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFIEI 426 (545)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~ 426 (545)
.......+.+.. ..+...|.+|+..|... ...+.++.|++++|
T Consensus 327 ~~~~~~~~~l~~----~~~~~~~~~n~~~~~~~---------------------------------~~~~~~~~G~~~~~ 369 (451)
T COG2132 327 GPNRDTDFHLIG----GIGGYVWAINGKAFDDN---------------------------------RVTLIAKAGTRERW 369 (451)
T ss_pred cccccccchhhc----ccccccccccCccCCCC---------------------------------cCceeecCCCEEEE
Confidence 000111111111 12234578888776431 12256899999999
Q ss_pred EEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccceeeeecchhhhhc
Q 009054 427 VFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMWNVRSEFWARQYL 506 (545)
Q Consensus 427 ~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~d~ 506 (545)
+|.|.+.+.|||||||+.|+|++.+. ......+.||||+.+.+++.++++|.+++||.||||||+++|++.
T Consensus 370 ~i~n~~~~~HP~HlHg~~F~v~~~~~---------~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~ 440 (451)
T COG2132 370 VLTNDTPMPHPFHLHGHFFQVLSGDA---------PAPGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDN 440 (451)
T ss_pred EEECCCCCccCeEEcCceEEEEecCC---------CcccccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhc
Confidence 99999999999999999999999971 122345789999999999999999999999999999999999999
Q ss_pred ceEEEEEEeC
Q 009054 507 GQQFYLRVYS 516 (545)
Q Consensus 507 GMm~~~~V~~ 516 (545)
|||..+.|..
T Consensus 441 Gm~~~~~v~~ 450 (451)
T COG2132 441 GMMGQFGVVP 450 (451)
T ss_pred CCeeEEEecC
Confidence 9999998853
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=1.6e-49 Score=398.62 Aligned_cols=264 Identities=16% Similarity=0.196 Sum_probs=220.0
Q ss_pred hcCCCeEEEEEEEEEEEecC-CCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCC--CCceEeeCCccCCCCCCCCCC
Q 009054 25 RAESPYRFFTWNVTYGDIYP-LGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLP--EPFLISWNGVQQRRNSYEDGV 101 (545)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~~~-dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~--~~~~iH~HG~~~~~~~~~DGv 101 (545)
.+.+++++|+|++++.++++ +|..+.+|+|||++|||+||+++||+|+|+|+|+++ ..+++||||. ..+||+
T Consensus 22 ~~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~-----~~~dg~ 96 (311)
T TIGR02376 22 RSGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAA-----TGALGG 96 (311)
T ss_pred cCCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCC-----CccCCC
Confidence 35668899999999999985 699999999999999999999999999999999985 5789999996 247888
Q ss_pred Ccc-CCcCCCCCeEEEEEEeCCcceeeeeecCc----hhhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecch
Q 009054 102 YGT-TCPIPPGKNFTYILQVKDQIGSYFYFPSV----GFQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANH 176 (545)
Q Consensus 102 ~~~-q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~----~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~ 176 (545)
+++ | |+||++++|+|++ +++||||||||. ..|+.+||+|+|||++++..+ ..|+|++|+++||+++..
T Consensus 97 ~~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~----~~d~e~~l~l~d~~~~~~ 169 (311)
T TIGR02376 97 AALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP----EYDKEYYIGESDLYTPKD 169 (311)
T ss_pred Cccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc----CcceeEEEeeeeEecccc
Confidence 776 5 9999999999996 689999999995 479999999999999864322 348899999999998754
Q ss_pred hhHHH-hhcc-C-CCCCCCCeEEEcccCC-CCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeE-
Q 009054 177 NKLKS-VLDR-G-HRLPSPDGILINGHGS-NGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTT- 251 (545)
Q Consensus 177 ~~~~~-~~~~-~-~~~~~~~~~liNG~~~-~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~- 251 (545)
..... +... + .....++.++|||+.. ..+.+++++|+++||||+|++..+.+.|+++|+.+++|+.||.++.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~~~~ 249 (311)
T TIGR02376 170 EGEGGAYEDDVAAMRTLTPTHVVFNGAVGALTGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANPPNR 249 (311)
T ss_pred ccccccccchHHHHhcCCCCEEEECCccCCCCCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCCCCC
Confidence 32111 0000 0 1124568999999953 2366899999999999999999999999999999999999999998644
Q ss_pred -EeEEEEccCceEEEEEEeCCCCcceEEEEeecccCCccceEEEEEecCCC
Q 009054 252 -YSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTRFTNKVLTSTGTLHYSNSA 301 (545)
Q Consensus 252 -~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~~~~~~~~~~ail~y~~~~ 301 (545)
++++.|+||||+||+|+++ .+|.|+++++...........++|.|++..
T Consensus 250 ~~~~~~i~PG~R~dv~v~~~-~pG~y~~~~~~~~~~~~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 250 DVETWFIPGGSAAAALYTFE-QPGVYAYVDHNLIEAFEKGAAAQVKVEGAW 299 (311)
T ss_pred CcceEEECCCceEEEEEEeC-CCeEEEEECcHHHHHHhCCCEEEEEECCCC
Confidence 8999999999999999999 589999999866443344578999998764
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=1.3e-36 Score=261.12 Aligned_cols=115 Identities=39% Similarity=0.676 Sum_probs=107.7
Q ss_pred EEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCcc-CCcCCCCCeE
Q 009054 36 NVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGT-TCPIPPGKNF 114 (545)
Q Consensus 36 ~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~-q~~i~pG~~~ 114 (545)
+|++.++.++|..+.+|+|||++|||+|||++||+|+|+|+|+|+++++|||||+++...+++||+++. ||+|.||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 478899999987799999999999999999999999999999999999999999999887889999998 9999999999
Q ss_pred EEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCC
Q 009054 115 TYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSR 150 (545)
Q Consensus 115 ~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~ 150 (545)
+|+|++++++||||||||.+.|..+||+|+|||+++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 999998666999999999998878999999999985
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=3.1e-30 Score=230.37 Aligned_cols=108 Identities=28% Similarity=0.474 Sum_probs=98.2
Q ss_pred ccccceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEe
Q 009054 409 IYLDTSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVAL 488 (545)
Q Consensus 409 ~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~a 488 (545)
.+.+...+.++.|++|+|+|.|.+...|||||||++|+|++++.+.+.......+++.+|.||||+.|+++++++|||++
T Consensus 29 ~~~~~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~ 108 (138)
T PF07731_consen 29 FFGNTPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA 108 (138)
T ss_dssp SSSTTSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE
T ss_pred cCCCcceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEe
Confidence 45677889999999999999999999999999999999999988776555455688899999999999999999999999
Q ss_pred CCccceeeeecchhhhhcceEEEEEEeC
Q 009054 489 DNVGMWNVRSEFWARQYLGQQFYLRVYS 516 (545)
Q Consensus 489 dnpG~w~~HCHil~H~d~GMm~~~~V~~ 516 (545)
||||.|+|||||++|+|.|||+.|.|.+
T Consensus 109 ~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 109 DNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp TSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred ecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999999864
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.94 E-value=2.4e-26 Score=209.86 Aligned_cols=139 Identities=32% Similarity=0.622 Sum_probs=115.3
Q ss_pred CcceEEEeeeeecchhhHHH-hhccC----CCCCCCCeEEEcccCC-----------CCceEEEeCCcEEEEEEEecCCC
Q 009054 162 GDFTVLIGDWYKANHNKLKS-VLDRG----HRLPSPDGILINGHGS-----------NGASFTVEQGKTYRFRISNVGLQ 225 (545)
Q Consensus 162 ~e~~l~~~d~~~~~~~~~~~-~~~~~----~~~~~~~~~liNG~~~-----------~~~~~~v~~G~~~rlRliNa~~~ 225 (545)
.|++|+++||+++....+.. ....+ ...+.++.++|||+.. ..+.+++++|++|||||||+|+.
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~ 80 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGAS 80 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCC
Confidence 48899999999887665544 22221 2356899999999764 24899999999999999999999
Q ss_pred CeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceEEEEEEeCCCCcceEEEEeec----ccCCccceEEEEEecCC
Q 009054 226 HSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTR----FTNKVLTSTGTLHYSNS 300 (545)
Q Consensus 226 ~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~----~~~~~~~~~ail~y~~~ 300 (545)
..+.|+|+||+|+|||+||.+++|..+++|.|+|||||||+|++++++|+|+|++... .......+.|+|+|+++
T Consensus 81 ~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~~ 159 (159)
T PF00394_consen 81 TSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDGA 159 (159)
T ss_dssp -BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETTS
T ss_pred eeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECCC
Confidence 9999999999999999999999999999999999999999999997799999999522 22335678999999863
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.78 E-value=1.2e-18 Score=155.19 Aligned_cols=101 Identities=19% Similarity=0.185 Sum_probs=80.3
Q ss_pred CeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCC---CCceEeeCCccCCCCCCCCCCCcc-CCcCCCC---C-e--EE
Q 009054 46 GVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLP---EPFLISWNGVQQRRNSYEDGVYGT-TCPIPPG---K-N--FT 115 (545)
Q Consensus 46 G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~---~~~~iH~HG~~~~~~~~~DGv~~~-q~~i~pG---~-~--~~ 115 (545)
+.....+.++| ++||+|++++||+|+|+|+|.++ .+..||+||......+.+||++.. ||+|.|+ + . .+
T Consensus 38 ~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~ 116 (148)
T TIGR03095 38 GPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTD 116 (148)
T ss_pred CCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeE
Confidence 45556677788 67999999999999999999964 456777777765545569999988 9988884 1 1 24
Q ss_pred EEEEeCCcceeeeeecCchhhhhcCeeeEEEEe
Q 009054 116 YILQVKDQIGSYFYFPSVGFQKAAGGFGGIRIL 148 (545)
Q Consensus 116 y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~ 148 (545)
+.|++ .++||||||||...|+.+||+|.|||+
T Consensus 117 ~tf~f-~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 117 FTYHF-STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEC-CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 45554 379999999999999999999999995
No 22
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.68 E-value=8.9e-15 Score=147.37 Aligned_cols=243 Identities=12% Similarity=0.044 Sum_probs=156.5
Q ss_pred CCeEEEcccCCCCceEEEeCCcEEEEEEEecCCC-CeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceEEEEEEeC
Q 009054 192 PDGILINGHGSNGASFTVEQGKTYRFRISNVGLQ-HSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMD 270 (545)
Q Consensus 192 ~~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~-~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~ 270 (545)
...+++||+.. .|.++++.|++++++|.|.... ..+.++++++. +.||... ...|.||+++.+-++++
T Consensus 47 ~~~~~~nG~~p-GP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t~ty~F~~~ 115 (311)
T TIGR02376 47 YQAMTFDGSVP-GPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGETATLRFKAT 115 (311)
T ss_pred EEEEEECCccc-CceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCeEEEEEEcC
Confidence 36899999974 5899999999999999998642 46788888864 4577531 22389999999999987
Q ss_pred CCCcceEEEEeecc--cCCc-cceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCccc
Q 009054 271 QPPQDFYIAVSTRF--TNKV-LTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGL 347 (545)
Q Consensus 271 ~~~g~y~~~~~~~~--~~~~-~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~ 347 (545)
.+|.||++||... ..+. ..-.+.|.+..... .+. . +....+ ...+ +.+...... ..
T Consensus 116 -~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~-----~~~-~--d~e~~l-~l~d--~~~~~~~~~---~~------ 174 (311)
T TIGR02376 116 -RPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREG-----LPE-Y--DKEYYI-GESD--LYTPKDEGE---GG------ 174 (311)
T ss_pred -CCEEEEEEcCCCCchhHHhhcCcceEEEeeccCC-----CcC-c--ceeEEE-eeee--Eeccccccc---cc------
Confidence 6999999999532 1111 11234444433211 111 1 100000 0001 111100000 00
Q ss_pred cccceEEEeec-cccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcEEEE
Q 009054 348 INISRTIKLES-SAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFIEI 426 (545)
Q Consensus 348 ~~~~~~~~l~~-~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~ 426 (545)
.+.... .+.. .....+.|||+.+... | .+.++.|++++|
T Consensus 175 -----~~~~~~~~~~~-~~~~~~~iNG~~~~~~--~--------------------------------~~~v~~G~~~Rl 214 (311)
T TIGR02376 175 -----AYEDDVAAMRT-LTPTHVVFNGAVGALT--G--------------------------------DNALTAGVGERV 214 (311)
T ss_pred -----cccchHHHHhc-CCCCEEEECCccCCCC--C--------------------------------CcccccCCcEEE
Confidence 000000 0000 1113478898753210 0 135788999999
Q ss_pred EEEcCCC-CCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCC-ccceEEeCCCCEEEEEEEeCCccceeeeecchhhh
Q 009054 427 VFQNHEN-IVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAV-SRCTTQVYPKSWTAIYVALDNVGMWNVRSEFWARQ 504 (545)
Q Consensus 427 ~i~N~~~-~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~-~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~ 504 (545)
.|.|.+. ..+.||++|++|.++...+....+ +. ..||+.|.||+...|.++++.||.|++|||...|.
T Consensus 215 RiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~----------~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~ 284 (311)
T TIGR02376 215 LFVHSQPNRDSRPHLIGGHGDYVWVTGKFANP----------PNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEA 284 (311)
T ss_pred EEEcCCCCCCCCCeEecCCceEEEECCcccCC----------CCCCcceEEECCCceEEEEEEeCCCeEEEEECcHHHHH
Confidence 9999975 679999999999999995432221 22 26999999999999999999999999999999887
Q ss_pred -hcceEEEEEEeC
Q 009054 505 -YLGQQFYLRVYS 516 (545)
Q Consensus 505 -d~GMm~~~~V~~ 516 (545)
..||++.++|..
T Consensus 285 ~~~g~~~~i~~~g 297 (311)
T TIGR02376 285 FEKGAAAQVKVEG 297 (311)
T ss_pred HhCCCEEEEEECC
Confidence 679999998853
No 23
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.66 E-value=3.5e-16 Score=169.07 Aligned_cols=100 Identities=17% Similarity=0.268 Sum_probs=85.9
Q ss_pred eeEEEEEEcCcccCc--eEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCcc---CCcCCCCCeEEEEEEeC
Q 009054 47 VRQQGILINGQFPGP--DIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGT---TCPIPPGKNFTYILQVK 121 (545)
Q Consensus 47 ~~~~~~~~ng~~pgP--~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~---q~~i~pG~~~~y~~~~~ 121 (545)
..+.+|+|||+.+++ .|++++||+|+|+|.|.+...+.|||||+.... ...||.... +..|+||++++|+|.+
T Consensus 483 m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v-~~~~G~~~~~~dTv~V~Pg~t~~~~f~a- 560 (587)
T TIGR01480 483 MERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSEL-EDGQGEFQVRKHTVDVPPGGKRSFRVTA- 560 (587)
T ss_pred CceeEEEECCccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCceeee-ecCCCcccccCCceeeCCCCEEEEEEEC-
Confidence 357789999998874 799999999999999999999999999997643 233664321 4689999999999994
Q ss_pred CcceeeeeecCchhhhhcCeeeEEEEe
Q 009054 122 DQIGSYFYFPSVGFQKAAGGFGGIRIL 148 (545)
Q Consensus 122 ~~~Gt~wYH~H~~~~~~~Gl~G~liV~ 148 (545)
+++|+||||||...|...||++.+.|.
T Consensus 561 d~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 561 DALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 789999999999999999999999873
No 24
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.46 E-value=7.8e-13 Score=113.88 Aligned_cols=96 Identities=19% Similarity=0.182 Sum_probs=78.5
Q ss_pred hhcCCCeEEEEEEEE--EEEe---cCCCeeEEEE-EEcCcccCceEEEecCCEEEEEEEeCCCCCc--eEeeCCccCCCC
Q 009054 24 ARAESPYRFFTWNVT--YGDI---YPLGVRQQGI-LINGQFPGPDIYSVTNDNLIINVHNSLPEPF--LISWNGVQQRRN 95 (545)
Q Consensus 24 ~~~~~~~~~~~l~~~--~~~~---~~dG~~~~~~-~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~--~iH~HG~~~~~~ 95 (545)
..+.+..++|+++|. +.++ ...|.....+ ++|+++..+.|+|++||+|++++.|..+.++ .+++||+
T Consensus 18 ~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi----- 92 (135)
T TIGR03096 18 GTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSIDAYGI----- 92 (135)
T ss_pred cchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEECCCCc-----
Confidence 445566789999999 6666 3568887777 9999999999999999999999999876543 4444443
Q ss_pred CCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCch
Q 009054 96 SYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVG 134 (545)
Q Consensus 96 ~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~ 134 (545)
+..|+||++.+|+|+ ++++|+|||||-.|
T Consensus 93 ---------s~~I~pGet~TitF~-adKpG~Y~y~C~~H 121 (135)
T TIGR03096 93 ---------SEVIKAGETKTISFK-ADKAGAFTIWCQLH 121 (135)
T ss_pred ---------ceEECCCCeEEEEEE-CCCCEEEEEeCCCC
Confidence 246899999999999 58999999999887
No 25
>PRK10965 multicopper oxidase; Provisional
Probab=99.30 E-value=4.1e-10 Score=121.16 Aligned_cols=248 Identities=17% Similarity=0.174 Sum_probs=148.5
Q ss_pred EEEEEEEEEEEecCCCe--------------eEEEEEEcCcccCceEEEecCCEEEEEEEeCCC-CCceEee-CCccCCC
Q 009054 31 RFFTWNVTYGDIYPLGV--------------RQQGILINGQFPGPDIYSVTNDNLIINVHNSLP-EPFLISW-NGVQQRR 94 (545)
Q Consensus 31 ~~~~l~~~~~~~~~dG~--------------~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~-~~~~iH~-HG~~~~~ 94 (545)
.++.|.+++.....+|. ....+++||+. .|.+.++ |.++++|+.|... ....+.+ .|.....
T Consensus 180 ~d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~v 257 (523)
T PRK10965 180 DDIPVILQDKRFSADGQIDYQLDVMTAAVGWFGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYV 257 (523)
T ss_pred ceeeEEEEeeeeCCCCceeccccccccccCccCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEE
Confidence 45666666655544432 23468999994 7888885 6699999999974 4456665 4432221
Q ss_pred CCCCCCCCc-----c-CCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcC------eeeEEEEeCC---CCCCCCC--
Q 009054 95 NSYEDGVYG-----T-TCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAG------GFGGIRILSR---PLIPVPF-- 157 (545)
Q Consensus 95 ~~~~DGv~~-----~-q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~G------l~G~liV~~~---~~~~~~~-- 157 (545)
-..||.+. + ...|.|||+++..+++ .+.|.++...-...+...+ -+-.+.|... .....|.
T Consensus 258 -Ia~DG~~l~~P~~v~~l~lapGeR~dvlv~~-~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l 335 (523)
T PRK10965 258 -IASDGGLLAEPVKVSELPILMGERFEVLVDT-SDGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSL 335 (523)
T ss_pred -EEeCCCcccCccEeCeEEECccceEEEEEEc-CCCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhh
Confidence 46788542 1 3459999999999996 4467777665322111100 1112333321 1101110
Q ss_pred ---CC-CC------CcceEEEeeeee---------cchhhHHHh-----------------hccC--CCCCCC---CeEE
Q 009054 158 ---PE-PA------GDFTVLIGDWYK---------ANHNKLKSV-----------------LDRG--HRLPSP---DGIL 196 (545)
Q Consensus 158 ---~~-~~------~e~~l~~~d~~~---------~~~~~~~~~-----------------~~~~--~~~~~~---~~~l 196 (545)
+. .. +.+.+.+..+.- ......... ++.+ ...... ..++
T Consensus 336 ~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (523)
T PRK10965 336 ASLPALPSLEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANK 415 (523)
T ss_pred ccCCCCCcccccceeEEEEeeccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 00 111222211100 000000000 0000 000001 1248
Q ss_pred EcccCCC--CceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCcccee---eEEeEEEEccCceEEEEEEeCC
Q 009054 197 INGHGSN--GASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQ---TTYSSLDVHVGQSYSVLVTMDQ 271 (545)
Q Consensus 197 iNG~~~~--~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p---~~~~~v~l~pgeR~dv~v~~~~ 271 (545)
|||+.++ .+.++++.|++.+|+|+|.+....+.|||||+.|+|++.||.+..+ ...|+|.+.+ ++++++++++.
T Consensus 416 ING~~~~~~~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~ 494 (523)
T PRK10965 416 INGKAFDMNKPMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDH 494 (523)
T ss_pred CCCeECCCCCcceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecC
Confidence 9999873 3557899999999999999976678999999999999999998653 4689999976 88999999983
Q ss_pred ---CCcceEEEEeec
Q 009054 272 ---PPQDFYIAVSTR 283 (545)
Q Consensus 272 ---~~g~y~~~~~~~ 283 (545)
.+|.|.++||..
T Consensus 495 ~~~~~g~~~~HCHiL 509 (523)
T PRK10965 495 DAPKEHAYMAHCHLL 509 (523)
T ss_pred CCCCCCCEEEEeCch
Confidence 457999999965
No 26
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.18 E-value=1.2e-09 Score=118.90 Aligned_cols=239 Identities=14% Similarity=0.107 Sum_probs=144.8
Q ss_pred CeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEE-eecCccceeeEEeEEEEccCceEEEEEEeCC
Q 009054 193 DGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLV-EVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQ 271 (545)
Q Consensus 193 ~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 271 (545)
..+++||+.. .|.|+++.|+++++++.|--... ..+|.||....-- ..||.+ .+..-.|.||+.+...+++.+
T Consensus 23 ~~~~~NG~~P-GP~i~~~~GD~v~v~v~N~l~~~-tsiHwHGl~q~~~~~~DGv~----~vTq~pI~PG~s~~Y~f~~~~ 96 (539)
T TIGR03389 23 SILTVNGKFP-GPTLYAREGDTVIVNVTNNVQYN-VTIHWHGVRQLRNGWADGPA----YITQCPIQPGQSYVYNFTITG 96 (539)
T ss_pred EEEEECCccc-CCEEEEEcCCEEEEEEEeCCCCC-eeEecCCCCCCCCCCCCCCc----ccccCCcCCCCeEEEEEEecC
Confidence 5899999985 69999999999999999998754 4666666542211 258864 233446899999999999865
Q ss_pred CCcceEEEEeecccCCccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCccccccc
Q 009054 272 PPQDFYIAVSTRFTNKVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGLINIS 351 (545)
Q Consensus 272 ~~g~y~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~ 351 (545)
.+|+||+++|....... ..+-|...+... .+.|. +..+.+ +...+....... .. ..-
T Consensus 97 ~~GT~WYHsH~~~~~~G--l~G~lIV~~~~~---~~~~~-~~~d~e--------~~l~l~Dw~~~~-~~--------~~~ 153 (539)
T TIGR03389 97 QRGTLWWHAHISWLRAT--VYGAIVILPKPG---VPYPF-PKPDRE--------VPIILGEWWNAD-VE--------AVI 153 (539)
T ss_pred CCeeEEEecCchhhhcc--ceEEEEEcCCCC---CCCCC-CCCCce--------EEEEecccccCC-HH--------HHH
Confidence 78999999996422212 233333332211 01111 000000 000000000000 00 000
Q ss_pred eEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcEEEEEEEcC
Q 009054 352 RTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFIEIVFQNH 431 (545)
Q Consensus 352 ~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~ 431 (545)
... +.... ...-...+.|||+...... | .......+.++.|+++++.|+|.
T Consensus 154 ~~~-~~~~~-~~~~~d~~liNG~~~~~~~--------------------~-------~~~~~~~i~v~~G~~~RlRlINa 204 (539)
T TIGR03389 154 NQA-NQTGG-APNVSDAYTINGHPGPLYN--------------------C-------SSKDTFKLTVEPGKTYLLRIINA 204 (539)
T ss_pred HHH-HhcCC-CCCccceEEECCCcCCCCC--------------------C-------CCCCceEEEECCCCEEEEEEEec
Confidence 000 00000 0001123678887521100 0 00123468899999999999999
Q ss_pred C-CCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCC-ccceeeeecc
Q 009054 432 E-NIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDN-VGMWNVRSEF 500 (545)
Q Consensus 432 ~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adn-pG~w~~HCHi 500 (545)
+ ...+-|||+||+|+|++..+.. ..|...|++.|.+|+...|.++++. +|.|.++-+.
T Consensus 205 ~~~~~~~~~idgH~~~VIa~DG~~-----------~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~ 264 (539)
T TIGR03389 205 ALNDELFFAIANHTLTVVEVDATY-----------TKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAARP 264 (539)
T ss_pred cCCceEEEEECCCeEEEEEeCCcc-----------cCceEeCeEEecCCCEEEEEEECCCCCceEEEEEec
Confidence 8 4568999999999999996421 2466789999999999999999976 8998877554
No 27
>PRK10883 FtsI repressor; Provisional
Probab=99.16 E-value=1.2e-09 Score=116.48 Aligned_cols=234 Identities=15% Similarity=0.130 Sum_probs=140.1
Q ss_pred EEEEEEEEEEecCCC-----------eeEEEEEEcCcccCceEEEecCCEEEEEEEeCCC-CCceEee-CCccCCCCCCC
Q 009054 32 FFTWNVTYGDIYPLG-----------VRQQGILINGQFPGPDIYSVTNDNLIINVHNSLP-EPFLISW-NGVQQRRNSYE 98 (545)
Q Consensus 32 ~~~l~~~~~~~~~dG-----------~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~-~~~~iH~-HG~~~~~~~~~ 98 (545)
++.|.+++..+..+| .....+++||+ ..|.|.|+.| ++++|+.|... ....+++ .|..... ...
T Consensus 181 d~~l~l~D~~~~~~g~~~~~~~~~~g~~gd~~lvNG~-~~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~v-Ia~ 257 (471)
T PRK10883 181 DFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGV-QSPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHV-IAG 257 (471)
T ss_pred ceeEEeeeeeeccCCCccccccccCCccCCeeEECCc-cCCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEE-EEe
Confidence 566666654443333 23456899998 4799999875 89999999985 5567777 5543221 457
Q ss_pred CCCCc-----c-CCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcCeee------------EEEEeCCCCCCCCCCCC
Q 009054 99 DGVYG-----T-TCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFG------------GIRILSRPLIPVPFPEP 160 (545)
Q Consensus 99 DGv~~-----~-q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G------------~liV~~~~~~~~~~~~~ 160 (545)
||-+. + +..|.|||+++.-.++ .+.+.+.+++-.......++.+ .+-++...... ..
T Consensus 258 DGg~~~~P~~~~~l~l~pGeR~dvlVd~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--- 332 (471)
T PRK10883 258 DQGFLPAPVSVKQLSLAPGERREILVDM-SNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP-LV--- 332 (471)
T ss_pred CCCcccCCcEeCeEEECCCCeEEEEEEC-CCCceEEEECCCccccccccccccCCccccccceeEEEEcccccc-CC---
Confidence 85432 1 4459999999999996 4456777776321111111111 11111110000 00
Q ss_pred CCcceEEEeeeeecchhhHHH-hhccCCCCCCCCeEEEcccCCCCc--eEEEeCCcEEEEEEEecCCCCeeeEEEeCcee
Q 009054 161 AGDFTVLIGDWYKANHNKLKS-VLDRGHRLPSPDGILINGHGSNGA--SFTVEQGKTYRFRISNVGLQHSLNFRIQGHKM 237 (545)
Q Consensus 161 ~~e~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~liNG~~~~~~--~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~ 237 (545)
....+..+............. .+.- ..+.++|||+.++.. .++++.|++.+|+|.|.. .+.||||+|.|
T Consensus 333 ~~~~p~~l~~~~~~~~~~~~~~~~~l-----~~~~~~INg~~~~~~~~~~~~~~g~~e~W~~~n~~---~HP~HlHg~~F 404 (471)
T PRK10883 333 TDNLPMRLLPDEIMEGSPIRSREISL-----GDDLPGINGALWDMNRIDVTAQQGTWERWTVRADM---PQAFHIEGVMF 404 (471)
T ss_pred CCcCChhhcCCCCCCCCCcceEEEEe-----cCCcCccCCcccCCCcceeecCCCCEEEEEEECCC---CcCEeECCccE
Confidence 000110000000000000000 0000 012346999987433 367999999999998863 58999999999
Q ss_pred EEEeecCcccee---eEEeEEEEccCceEEEEEEeCCCCc---ceEEEEeec
Q 009054 238 KLVEVEGTHTIQ---TTYSSLDVHVGQSYSVLVTMDQPPQ---DFYIAVSTR 283 (545)
Q Consensus 238 ~via~DG~~~~p---~~~~~v~l~pgeR~dv~v~~~~~~g---~y~~~~~~~ 283 (545)
+|++.||....| ...|+|.+ + +++.+++++++..+ .|.++||..
T Consensus 405 qVl~~~G~~~~~~~~gwkDTV~v-~-~~v~i~~~f~~~~~~~~~~m~HCHiL 454 (471)
T PRK10883 405 LIRNVNGAMPFPEDRGWKDTVWV-D-GQVELLVYFGQPSWAHFPFLFYSQTL 454 (471)
T ss_pred EEEEecCCCCCccccCcCcEEEc-C-CeEEEEEEecCCCCCCCcEEeecccc
Confidence 999999986544 34799999 3 57999999995443 799999965
No 28
>PLN02835 oxidoreductase
Probab=99.12 E-value=4.5e-09 Score=113.62 Aligned_cols=218 Identities=16% Similarity=0.134 Sum_probs=136.5
Q ss_pred CeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEE-EeecCccceeeEEeEEEEccCceEEEEEEeCC
Q 009054 193 DGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKL-VEVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQ 271 (545)
Q Consensus 193 ~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 271 (545)
..++|||+.. .|.|+++.|+++++++.|.-.. ...+|.||..+.- -..||.+. ..-.|.||+.+..-++..+
T Consensus 49 ~~~~~NG~~P-GP~I~~~~GD~v~v~v~N~L~~-~ttiHWHGl~~~~~~~~DGv~~-----tQ~pI~PG~sf~Y~F~~~~ 121 (539)
T PLN02835 49 QVILINGQFP-GPRLDVVTNDNIILNLINKLDQ-PFLLTWNGIKQRKNSWQDGVLG-----TNCPIPPNSNYTYKFQTKD 121 (539)
T ss_pred EEEEECCcCC-CCCEEEECCCEEEEEEEeCCCC-CCcEEeCCcccCCCCCCCCCcc-----CcCCCCCCCcEEEEEEECC
Confidence 5899999985 6999999999999999999874 3467777765432 23699642 2347999999999998754
Q ss_pred CCcceEEEEeeccc-CCccceEEEEEecCCCCCCCCCCCC-CCCccc-----ccccccccccccCCCCCCCCCCCCCCCC
Q 009054 272 PPQDFYIAVSTRFT-NKVLTSTGTLHYSNSAHPVSGPVPG-GPTTQI-----DWSLNQARSIRTNLTASGPRPNPQGSYH 344 (545)
Q Consensus 272 ~~g~y~~~~~~~~~-~~~~~~~ail~y~~~~~~~~~~~p~-~p~~~~-----~~~~~~~~~l~~~l~~~~~~p~p~~~~~ 344 (545)
.+|+||+++|.... ...+.+.-|++ ..... +.|. .+..+. +|.......+...+....
T Consensus 122 q~GT~WYHsH~~~q~~~Gl~G~lIV~-~~~~~----~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~---------- 186 (539)
T PLN02835 122 QIGTFTYFPSTLFHKAAGGFGAINVY-ERPRI----PIPFPLPDGDFTLLVGDWYKTSHKTLQQRLDSGK---------- 186 (539)
T ss_pred CCEeEEEEeCccchhcCcccceeEEe-CCCCC----CcCCCCCCceEEEEeeccccCCHHHHHHHhhcCC----------
Confidence 69999999985321 11222323332 21111 1111 000010 000000000000000000
Q ss_pred ccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcEE
Q 009054 345 YGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFI 424 (545)
Q Consensus 345 ~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v 424 (545)
. ..-.....|||+.. ..+.++.|+++
T Consensus 187 ---------------~--~~~~d~~liNG~~~-------------------------------------~~~~v~~G~~y 212 (539)
T PLN02835 187 ---------------V--LPFPDGVLINGQTQ-------------------------------------STFSGDQGKTY 212 (539)
T ss_pred ---------------C--CCCCceEEEccccC-------------------------------------ceEEECCCCEE
Confidence 0 00011245666531 12568899999
Q ss_pred EEEEEcCCC-CCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCC-ccceeee
Q 009054 425 EIVFQNHEN-IVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDN-VGMWNVR 497 (545)
Q Consensus 425 ~~~i~N~~~-~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adn-pG~w~~H 497 (545)
+|.|+|.+. ...-|||.||+|.|++..+... .|...|++.|.+|+...|.++++. +|.|-++
T Consensus 213 RlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v-----------~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~ 276 (539)
T PLN02835 213 MFRISNVGLSTSLNFRIQGHTMKLVEVEGSHT-----------IQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIV 276 (539)
T ss_pred EEEEEEcCCCccEEEEECCCEEEEEEECCccC-----------CCceeeEEEECcCceEEEEEEcCCCCCcEEEE
Confidence 999999984 4799999999999999965322 244579999999999999999865 6877665
No 29
>PLN02354 copper ion binding / oxidoreductase
Probab=99.04 E-value=1.1e-08 Score=110.66 Aligned_cols=232 Identities=13% Similarity=0.098 Sum_probs=141.3
Q ss_pred CeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEE-EeecCccceeeEEeEEEEccCceEEEEEEeCC
Q 009054 193 DGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKL-VEVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQ 271 (545)
Q Consensus 193 ~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 271 (545)
..++|||+.. .|.|+++.|+++++++.|.-.. ...+|.||....- -..||.+. ..-.|.||+.+...+++.+
T Consensus 47 ~~~~iNGq~P-GP~I~~~~GD~v~V~v~N~l~~-~ttiHWHGi~q~~~~~~DGv~~-----TQcpI~PG~sf~Y~F~~~~ 119 (552)
T PLN02354 47 QVILINGQFP-GPNINSTSNNNIVINVFNNLDE-PFLLTWSGIQQRKNSWQDGVPG-----TNCPIPPGTNFTYHFQPKD 119 (552)
T ss_pred EEEEECCCCc-CCcEEEeCCCEEEEEEEECCCC-CcccccccccCCCCcccCCCcC-----CcCCCCCCCcEEEEEEeCC
Confidence 5899999985 7999999999999999999864 3456666654432 23799642 3458999999999999864
Q ss_pred CCcceEEEEeecccCCc-cceEEEEEecCCCCCCCCCCCC-CCCcccccccccccccccCCCCCCCCCCCCCCCCccccc
Q 009054 272 PPQDFYIAVSTRFTNKV-LTSTGTLHYSNSAHPVSGPVPG-GPTTQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGLIN 349 (545)
Q Consensus 272 ~~g~y~~~~~~~~~~~~-~~~~ail~y~~~~~~~~~~~p~-~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~ 349 (545)
.+|+||+++|.. .|. ....+-|...+... .+.|. .+..+.. ..+.+-.... .. .
T Consensus 120 q~GT~WYHsH~~--~Q~~~Gl~G~lII~~~~~---~~~p~~~~d~e~~----------l~l~Dw~~~~--~~-------~ 175 (552)
T PLN02354 120 QIGSYFYYPSTG--MHRAAGGFGGLRVNSRLL---IPVPYADPEDDYT----------VLIGDWYTKS--HT-------A 175 (552)
T ss_pred CCcceEEecCcc--ceecCCccceEEEcCCcC---CCCCCCCcCceEE----------EEeeeeccCC--HH-------H
Confidence 689999999853 221 11222222222211 01111 0101100 0000000000 00 0
Q ss_pred cceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcEEEEEEE
Q 009054 350 ISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFIEIVFQ 429 (545)
Q Consensus 350 ~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~ 429 (545)
.... +... ..........|||+..... ......+.++.|++++|.|+
T Consensus 176 ~~~~--~~~g-~~~~~~d~~liNG~~~~~~------------------------------~~~~~~~~v~~Gk~yRlRiI 222 (552)
T PLN02354 176 LKKF--LDSG-RTLGRPDGVLINGKSGKGD------------------------------GKDEPLFTMKPGKTYRYRIC 222 (552)
T ss_pred HHHH--HhcC-CCCCCCCeEEEeCCcCCCC------------------------------CCCceEEEECCCCEEEEEEE
Confidence 0000 0000 0000112356777642100 01234578999999999999
Q ss_pred cCC-CCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCC-ccceeeeec
Q 009054 430 NHE-NIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDN-VGMWNVRSE 499 (545)
Q Consensus 430 N~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adn-pG~w~~HCH 499 (545)
|.+ ....-|||.||+|.|++..+... .|..-|++.|.+|+...|.++++. +|.|-+.-.
T Consensus 223 Na~~~~~~~f~IdgH~~tVIa~DG~~v-----------~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~ 283 (552)
T PLN02354 223 NVGLKSSLNFRIQGHKMKLVEMEGSHV-----------LQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVAS 283 (552)
T ss_pred ecCCCceEEEEECCceEEEEEeCCccc-----------CCcceeEEEEccCceEEEEEECCCCCCcEEEEEe
Confidence 998 45699999999999999965322 244569999999999999999975 798777655
No 30
>PLN02168 copper ion binding / pectinesterase
Probab=99.01 E-value=2.1e-08 Score=108.16 Aligned_cols=218 Identities=11% Similarity=0.116 Sum_probs=133.0
Q ss_pred CeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEe-ecCccceeeEEeEEEEccCceEEEEEEeCC
Q 009054 193 DGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVE-VEGTHTIQTTYSSLDVHVGQSYSVLVTMDQ 271 (545)
Q Consensus 193 ~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via-~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 271 (545)
..++|||+.. .|.|+++.|+++++++.|.-... ..+|.||..+.--. .||.+. .+-.|.||+++..-+++++
T Consensus 46 ~~~~vNG~~P-GP~I~~~~GD~v~V~v~N~L~~~-ttiHWHGl~~~~~~~~DGv~g-----tQcpI~PG~sftY~F~~~~ 118 (545)
T PLN02168 46 QVIVINDMFP-GPLLNATANDVINVNIFNNLTEP-FLMTWNGLQLRKNSWQDGVRG-----TNCPILPGTNWTYRFQVKD 118 (545)
T ss_pred EEEEECCcCC-CCcEEEECCCEEEEEEEeCCCCC-ccEeeCCccCCCCCCcCCCCC-----CcCCCCCCCcEEEEEEeCC
Confidence 5789999986 79999999999999999998754 46777775442221 499642 2357999999999999965
Q ss_pred CCcceEEEEeecccCCc-cceEEEEEecCCCCCCCCCCCC-CCCcccccccccccccccCCCCCCCCCCCCCCCCccccc
Q 009054 272 PPQDFYIAVSTRFTNKV-LTSTGTLHYSNSAHPVSGPVPG-GPTTQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGLIN 349 (545)
Q Consensus 272 ~~g~y~~~~~~~~~~~~-~~~~ail~y~~~~~~~~~~~p~-~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~ 349 (545)
.+|+||+++|.. .|. ....+.|...+... .+.|. .+..+.. + ...+ +.... .. .
T Consensus 119 q~GT~WYHsH~~--~Q~~~GL~G~lII~~~~~---~~~p~~~~d~e~~--l-~l~D--w~~~~-------~~-------~ 174 (545)
T PLN02168 119 QIGSYFYFPSLL--LQKAAGGYGAIRIYNPEL---VPVPFPKPDEEYD--I-LIGD--WFYAD-------HT-------V 174 (545)
T ss_pred CCceEEEecChh--hhhhCcceeEEEEcCCcc---cCcCcCcccceee--E-EEEe--cCCCC-------HH-------H
Confidence 699999999853 221 11223333322211 11111 0101110 0 0000 00000 00 0
Q ss_pred cceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcEEEEEEE
Q 009054 350 ISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFIEIVFQ 429 (545)
Q Consensus 350 ~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~ 429 (545)
... .+..... ........|||+.. ....+.++.|++++|.|.
T Consensus 175 ~~~--~~~~g~~-~~~~d~~liNG~~~-----------------------------------~~~~~~v~~G~~yRlRii 216 (545)
T PLN02168 175 MRA--SLDNGHS-LPNPDGILFNGRGP-----------------------------------EETFFAFEPGKTYRLRIS 216 (545)
T ss_pred HHh--hhhcCCC-CCCCCEEEEeccCC-----------------------------------CcceEEeCCCCEEEEEEE
Confidence 000 0000000 00011245666531 012467899999999999
Q ss_pred cCCC-CCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCC
Q 009054 430 NHEN-IVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDN 490 (545)
Q Consensus 430 N~~~-~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adn 490 (545)
|.+. ..+-|+|.||+|+|++..+.. ..|..-|++.|.+|+..-|.+++++
T Consensus 217 Na~~~~~~~~~IdgH~~tVIa~DG~~-----------v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 217 NVGLKTCLNFRIQDHDMLLVETEGTY-----------VQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred eccCCceEEEEECCcEEEEEEECCeE-----------CCCceeeEEEEcCCceEEEEEEcCC
Confidence 9884 469999999999999986532 2345569999999999999999974
No 31
>PLN02991 oxidoreductase
Probab=98.98 E-value=2.4e-08 Score=107.67 Aligned_cols=219 Identities=16% Similarity=0.199 Sum_probs=136.4
Q ss_pred CeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeE-EEeecCccceeeEEeEEEEccCceEEEEEEeCC
Q 009054 193 DGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMK-LVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQ 271 (545)
Q Consensus 193 ~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~-via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 271 (545)
..++|||+.. .|.|+++.|+++++++.|.... ...+|.||.... --..||.+. + .-.|.||+.+..-+++++
T Consensus 48 ~~~~vNG~~P-GP~I~~~~GD~v~V~V~N~L~~-~ttiHWHGi~q~~~~~~DGv~~----t-QcpI~PG~sftY~F~~~~ 120 (543)
T PLN02991 48 QGILINGKFP-GPDIISVTNDNLIINVFNHLDE-PFLISWSGIRNWRNSYQDGVYG----T-TCPIPPGKNYTYALQVKD 120 (543)
T ss_pred EEEEEcCCCC-CCcEEEECCCEEEEEecCCCCC-CccEEECCcccCCCccccCCCC----C-CCccCCCCcEEEEEEeCC
Confidence 5899999986 7999999999999999999864 446777776542 234799642 2 457999999999999965
Q ss_pred CCcceEEEEeecccCCccceEEEEEecCCCCCCCCCCCCC-CCccc-----ccccccccccccCCCCCCCCCCCCCCCCc
Q 009054 272 PPQDFYIAVSTRFTNKVLTSTGTLHYSNSAHPVSGPVPGG-PTTQI-----DWSLNQARSIRTNLTASGPRPNPQGSYHY 345 (545)
Q Consensus 272 ~~g~y~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~-p~~~~-----~~~~~~~~~l~~~l~~~~~~p~p~~~~~~ 345 (545)
.+|+||++.|..... .....+-|...+... .+.|.. +..+. +|.......+...+
T Consensus 121 q~GT~WYHsH~~~q~-~~Gl~G~lIV~~~~~---~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~~--------------- 181 (543)
T PLN02991 121 QIGSFYYFPSLGFHK-AAGGFGAIRISSRPL---IPVPFPAPADDYTVLIGDWYKTNHKDLRAQL--------------- 181 (543)
T ss_pred CCcceEEecCcchhh-hCCCeeeEEEeCCcc---cCcccccccceeEEEecceecCCHHHHHHHh---------------
Confidence 699999999954221 111233333322211 111110 10010 01000000000000
Q ss_pred cccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcEEE
Q 009054 346 GLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFIE 425 (545)
Q Consensus 346 ~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ 425 (545)
... ..........|||+.. ...+.++.|++++
T Consensus 182 -----------~~~-~~~~~~d~~liNG~~~------------------------------------~~~~~v~~G~~yR 213 (543)
T PLN02991 182 -----------DNG-GKLPLPDGILINGRGS------------------------------------GATLNIEPGKTYR 213 (543)
T ss_pred -----------hcC-CCCCCCCEEEEccCCC------------------------------------CceEEECCCCEEE
Confidence 000 0000011245666521 1236788999999
Q ss_pred EEEEcCCCC-CCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCC-ccc-eee
Q 009054 426 IVFQNHENI-VQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDN-VGM-WNV 496 (545)
Q Consensus 426 ~~i~N~~~~-~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adn-pG~-w~~ 496 (545)
+.|+|.+.. .+-|+|.||+|+|++..+.. ..|...|++.|.+|+..-|.+++|. +|. |+.
T Consensus 214 lRiINa~~~~~~~~~idgH~~tVIa~DG~~-----------~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~ 276 (543)
T PLN02991 214 LRISNVGLQNSLNFRIQNHTMKLVEVEGTH-----------TIQTPFSSLDVHVGQSYSVLITADQPAKDYYIV 276 (543)
T ss_pred EEEEeccCCeeEEEEECCCEEEEEEeCCcc-----------ccceeeeEEEEcCCcEEEEEEECCCCCCcEEEE
Confidence 999999854 58999999999999986432 2355679999999999999999987 464 443
No 32
>PLN02792 oxidoreductase
Probab=98.96 E-value=3.4e-08 Score=106.49 Aligned_cols=228 Identities=13% Similarity=0.116 Sum_probs=136.5
Q ss_pred CeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEE-eecCccceeeEEeEEEEccCceEEEEEEeCC
Q 009054 193 DGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLV-EVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQ 271 (545)
Q Consensus 193 ~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 271 (545)
..++|||+.. .|.|+++.|+++++++.|-... ...+|.||..+.-- ..||.+. + +-.|.||+.+..-+++++
T Consensus 36 ~~~~vNGq~P-GP~I~~~~GD~v~V~v~N~L~~-~ttiHWHGl~q~~~~~~DGv~~----t-qcPI~PG~sftY~F~~~~ 108 (536)
T PLN02792 36 RGILINGQFP-GPEIRSLTNDNLVINVHNDLDE-PFLLSWNGVHMRKNSYQDGVYG----T-TCPIPPGKNYTYDFQVKD 108 (536)
T ss_pred EEEEECCCCC-CCcEEEECCCEEEEEEEeCCCC-CcCEeCCCcccCCCCccCCCCC----C-cCccCCCCcEEEEEEeCC
Confidence 5899999985 7999999999999999999773 33555555443222 2799632 2 257999999999999865
Q ss_pred CCcceEEEEeeccc-CCccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCcccccc
Q 009054 272 PPQDFYIAVSTRFT-NKVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGLINI 350 (545)
Q Consensus 272 ~~g~y~~~~~~~~~-~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~ 350 (545)
.+|+||+++|.... .....+..+| +.....+ .+.+. +..+.. ..+.+..... .. ..
T Consensus 109 q~GT~WYHsH~~~q~~~Gl~G~liI-~~~~~~~--~p~~~-~d~e~~----------i~l~Dw~~~~--~~-------~~ 165 (536)
T PLN02792 109 QVGSYFYFPSLAVQKAAGGYGSLRI-YSLPRIP--VPFPE-PAGDFT----------FLIGDWYRRN--HT-------TL 165 (536)
T ss_pred CccceEEecCcchhhhcccccceEE-eCCcccC--cCCCc-ccceeE----------EEecccccCC--HH-------HH
Confidence 69999999995321 1122222222 2211110 01110 101100 0000000000 00 00
Q ss_pred ceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcEEEEEEEc
Q 009054 351 SRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFIEIVFQN 430 (545)
Q Consensus 351 ~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N 430 (545)
... +..............|||+... ....+.++.|++++|.|.|
T Consensus 166 ~~~--~~~g~~~~~~~d~~liNG~~~~----------------------------------~~~~~~v~~Gk~yRlRliN 209 (536)
T PLN02792 166 KKI--LDGGRKLPLMPDGVMINGQGVS----------------------------------YVYSITVDKGKTYRFRISN 209 (536)
T ss_pred HHH--hhccCcCCCCCCEEEEeccCCC----------------------------------CcceEEECCCCEEEEEEEE
Confidence 000 0000000001123567775311 0134778999999999999
Q ss_pred CCC-CCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCC-ccceeee
Q 009054 431 HEN-IVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDN-VGMWNVR 497 (545)
Q Consensus 431 ~~~-~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adn-pG~w~~H 497 (545)
.+. ...-|+|.||+|.|++..+... .|...|++.|.+|+...|.++++. +|.|-+.
T Consensus 210 a~~~~~~~f~i~gH~~tVI~~DG~~v-----------~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~ 267 (536)
T PLN02792 210 VGLQTSLNFEILGHQLKLIEVEGTHT-----------VQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIV 267 (536)
T ss_pred cCCCceEEEEECCcEEEEEEeCCccC-----------CCcceeEEEEccCceEEEEEEcCCCCceEEEE
Confidence 984 4689999999999999865322 244569999999999999999976 5776654
No 33
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.96 E-value=1.6e-08 Score=108.14 Aligned_cols=230 Identities=13% Similarity=0.081 Sum_probs=143.5
Q ss_pred CeeEEEEEEcCcccCceEEEecCCEEEEEEEeCC-CCCceEeeCCccCCCCCCCCCCC----cc-CCcCCCCCeEEEEEE
Q 009054 46 GVRQQGILINGQFPGPDIYSVTNDNLIINVHNSL-PEPFLISWNGVQQRRNSYEDGVY----GT-TCPIPPGKNFTYILQ 119 (545)
Q Consensus 46 G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l-~~~~~iH~HG~~~~~~~~~DGv~----~~-q~~i~pG~~~~y~~~ 119 (545)
|.......+||+ .-| +.+.++..+++|+.|.. .....+++.|..... -..||.+ .+ +..+.|||+++....
T Consensus 186 ~~~g~~~~vnG~-~~p-~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~V-i~~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGA-ILP-FKAVPGGVVRLRLLNAGNARTYHLALGGGPLTV-IAVDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCC-ccc-eeecCCCeEEEEEEecCCceEEEEEecCceEEE-EEeCCcCcCceeeeeEEecCcceEEEEEE
Confidence 334455666763 234 44555556999999998 566667776655443 4567765 34 667999999999999
Q ss_pred eCCcceeeeeecCchhhhhcCeeeEEEEeCCCCCC-CCC------CCCC---CcceEEEeeeeecchhhHHHhhccCCCC
Q 009054 120 VKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLIP-VPF------PEPA---GDFTVLIGDWYKANHNKLKSVLDRGHRL 189 (545)
Q Consensus 120 ~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~-~~~------~~~~---~e~~l~~~d~~~~~~~~~~~~~~~~~~~ 189 (545)
.+ ..|++-+.|.. .+..+-+.+..-........ ..+ ...+ ............+........... ...
T Consensus 263 ~~-~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~ 339 (451)
T COG2132 263 MN-DGGAVTLTALG-EDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHL-IGG 339 (451)
T ss_pred cC-CCCeEEEEecc-ccCCceeeeeeccccccccccccccccccCCCcchhhccccccchhhcCCCcccccccchh-hcc
Confidence 64 47899999887 22222233322211100000 000 0001 111111111111110000000000 001
Q ss_pred CCCCeEEEcccCCC--CceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccc---eeeEEeEEEEccCceEE
Q 009054 190 PSPDGILINGHGSN--GASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHT---IQTTYSSLDVHVGQSYS 264 (545)
Q Consensus 190 ~~~~~~liNG~~~~--~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~---~p~~~~~v~l~pgeR~d 264 (545)
.....+.+||+.+. ...+.++.|+++||+|.|-+. -.+.||++|+.|.|++.| ... .+...|++.+.|++|+.
T Consensus 340 ~~~~~~~~n~~~~~~~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v~~~~~~~ 417 (451)
T COG2132 340 IGGYVWAINGKAFDDNRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKDTVLVAPGERLL 417 (451)
T ss_pred cccccccccCccCCCCcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccceEEEeCCCeEEE
Confidence 12356899999984 367789999999999999998 667999999999999999 332 35678999999999999
Q ss_pred EEEEeCCCCcceEEEEeecc
Q 009054 265 VLVTMDQPPQDFYIAVSTRF 284 (545)
Q Consensus 265 v~v~~~~~~g~y~~~~~~~~ 284 (545)
+.++++ .+|.|.++||...
T Consensus 418 v~~~a~-~~g~~~~HCH~l~ 436 (451)
T COG2132 418 VRFDAD-YPGPWMFHCHILE 436 (451)
T ss_pred EEEeCC-CCCceEEeccchh
Confidence 999999 7889999999653
No 34
>PLN02604 oxidoreductase
Probab=98.95 E-value=3.9e-09 Score=115.19 Aligned_cols=89 Identities=15% Similarity=0.156 Sum_probs=71.0
Q ss_pred EecCCCcEEEEEEEcCC-CCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 416 MGADFRGFIEIVFQNHE-NIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 416 ~~~~~g~~v~~~i~N~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
+.++.|+++++.+.|.. ...|+||+||... .+. .|... ...-....|+||+..+++|+++++|.|
T Consensus 57 i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~--~~~---~~~DG---------~~~~tq~~i~pg~s~~y~f~~~~~Gt~ 122 (566)
T PLN02604 57 ILAQQGDTVIVELKNSLLTENVAIHWHGIRQ--IGT---PWFDG---------TEGVTQCPILPGETFTYEFVVDRPGTY 122 (566)
T ss_pred EEEECCCEEEEEEEeCCCCCCCCEEeCCCCC--CCC---ccccC---------CCccccCccCCCCeEEEEEEcCCCEEE
Confidence 67899999999999996 5789999999942 111 11000 011134578999999999999999999
Q ss_pred eeeecchhhhhcceEEEEEEeCCC
Q 009054 495 NVRSEFWARQYLGQQFYLRVYSPV 518 (545)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V~~~~ 518 (545)
.||||...|.+.||+..+.|.+++
T Consensus 123 wyH~H~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 123 LYHAHYGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred EEeeCcHHHHhCCCeEEEEEEecC
Confidence 999999999999999999998764
No 35
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.93 E-value=7.4e-08 Score=104.62 Aligned_cols=236 Identities=13% Similarity=0.158 Sum_probs=142.3
Q ss_pred CeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEE-EeecCccceeeEEeEEEEccCceEEEEEEeC-
Q 009054 193 DGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKL-VEVEGTHTIQTTYSSLDVHVGQSYSVLVTMD- 270 (545)
Q Consensus 193 ~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~~~v~l~pgeR~dv~v~~~- 270 (545)
..++|||+.. .|.|+++.|+++++++.|.-......+|.||..+.- -..||.+.. ..-.|.||+.+...++++
T Consensus 28 ~~~~~NG~~P-GP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~v----TQcpI~PG~sf~Y~f~~~~ 102 (538)
T TIGR03390 28 YSVVVNGTSP-GPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLA----SQWPIPPGHFFDYEIKPEP 102 (538)
T ss_pred EEEEECCcCC-CCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCccc----ccCCCCCCCcEEEEEEecC
Confidence 5899999985 799999999999999999865445567777765422 236888632 223588999999988875
Q ss_pred CCCcceEEEEeecccCCccceEEEEEecCCCCCCCCCCCCCCCccc-----ccccccccccccCCCCCCCCCCCCCCCCc
Q 009054 271 QPPQDFYIAVSTRFTNKVLTSTGTLHYSNSAHPVSGPVPGGPTTQI-----DWSLNQARSIRTNLTASGPRPNPQGSYHY 345 (545)
Q Consensus 271 ~~~g~y~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~-----~~~~~~~~~l~~~l~~~~~~p~p~~~~~~ 345 (545)
..+|+||+++|... |.....+.|...+... .+... ..+. +|.......+...+
T Consensus 103 ~q~GT~WYHsH~~~--Q~~~l~G~lIV~~~~~---~~~~~--d~e~~l~l~Dw~~~~~~~~~~~~--------------- 160 (538)
T TIGR03390 103 GDAGSYFYHSHVGF--QAVTAFGPLIVEDCEP---PPYKY--DDERILLVSDFFSATDEEIEQGL--------------- 160 (538)
T ss_pred CCCeeeEEecCCch--hhhcceeEEEEccCCc---cCCCc--cCcEEEEEeCCCCCCHHHHHhhh---------------
Confidence 36899999999532 2212334444433211 00000 0000 01100000000000
Q ss_pred cccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcEEE
Q 009054 346 GLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFIE 425 (545)
Q Consensus 346 ~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ 425 (545)
+..............|||+......... . . . ...| ....+.++.|++++
T Consensus 161 ----------~~~~~~~~~~~d~~liNG~~~~~~~~~~-------~----~-------~--~~~~-~~~~~~v~~G~~yR 209 (538)
T TIGR03390 161 ----------LSTPFTWSGETEAVLLNGKSGNKSFYAQ-------I----N-------P--SGSC-MLPVIDVEPGKTYR 209 (538)
T ss_pred ----------hccCCccCCCCceEEECCcccccccccc-------c----c-------C--CCCC-cceEEEECCCCEEE
Confidence 0000000011123578887422110000 0 0 0 0011 13468899999999
Q ss_pred EEEEcCCC-CCCceeecCCc-eEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCc--------ccee
Q 009054 426 IVFQNHEN-IVQSWHIDGYN-FWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNV--------GMWN 495 (545)
Q Consensus 426 ~~i~N~~~-~~HP~HlHG~~-F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnp--------G~w~ 495 (545)
|.|+|.+. ...-|+|.||+ |+|++..+. +..|...|++.|.+|+..-|.++++.+ |.|.
T Consensus 210 lRlINa~~~~~~~~~idgH~~~~VIa~DG~-----------~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ 278 (538)
T TIGR03390 210 LRFIGATALSLISLGIEDHENLTIIEADGS-----------YTKPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYF 278 (538)
T ss_pred EEEEccCCceEEEEEECCCCeEEEEEeCCC-----------CCCceEeCeEEEccCCEEEEEEECCCccccccCCCCcEE
Confidence 99999984 45899999999 999999653 234677899999999999999999763 6765
Q ss_pred ee
Q 009054 496 VR 497 (545)
Q Consensus 496 ~H 497 (545)
+.
T Consensus 279 ir 280 (538)
T TIGR03390 279 IQ 280 (538)
T ss_pred EE
Confidence 44
No 36
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.91 E-value=2.7e-08 Score=108.29 Aligned_cols=221 Identities=10% Similarity=0.082 Sum_probs=129.8
Q ss_pred ceEEEecCCEEEEEEEeCC-CCCceEeeCCccCCCCCCCCCCCc----c-CCcCCCCCeEEEEEEeCCcc-eeeeeecCc
Q 009054 61 PDIYSVTNDNLIINVHNSL-PEPFLISWNGVQQRRNSYEDGVYG----T-TCPIPPGKNFTYILQVKDQI-GSYFYFPSV 133 (545)
Q Consensus 61 P~i~v~~Gd~v~v~~~N~l-~~~~~iH~HG~~~~~~~~~DGv~~----~-q~~i~pG~~~~y~~~~~~~~-Gt~wYH~H~ 133 (545)
++|.|++|+++++|+.|.. .....++..|..+.. -..||.+. + ...|.|||+++..+++.+.+ |.||-+.-.
T Consensus 203 ~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~V-Ia~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~ 281 (541)
T TIGR03388 203 QILHVEPGKTYRLRIASTTALAALNFAIEGHKLTV-VEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGV 281 (541)
T ss_pred eEEEECCCCEEEEEEEcccccceEEEEECCCEEEE-EEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEec
Confidence 3589999999999999987 456677777765543 56899753 1 34599999999999964334 589998654
Q ss_pred hhhhh-cCeeeEEEEeCCCCC-C-C-------C-CCCC----CCcceEEEeeeeecchhhHHH--hh-ccCCCCCCCCeE
Q 009054 134 GFQKA-AGGFGGIRILSRPLI-P-V-------P-FPEP----AGDFTVLIGDWYKANHNKLKS--VL-DRGHRLPSPDGI 195 (545)
Q Consensus 134 ~~~~~-~Gl~G~liV~~~~~~-~-~-------~-~~~~----~~e~~l~~~d~~~~~~~~~~~--~~-~~~~~~~~~~~~ 195 (545)
..+.. .....+++....... . . + +... +.+..++-............. .+ ..+........+
T Consensus 282 ~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (541)
T TIGR03388 282 RGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKW 361 (541)
T ss_pred ccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEE
Confidence 32211 111124444322111 0 0 0 0000 000000000000000000000 00 000000001124
Q ss_pred EEcccCCC---------------------------------------------CceEEEeCCcEEEEEEEecCC-----C
Q 009054 196 LINGHGSN---------------------------------------------GASFTVEQGKTYRFRISNVGL-----Q 225 (545)
Q Consensus 196 liNG~~~~---------------------------------------------~~~~~v~~G~~~rlRliNa~~-----~ 225 (545)
.+||..+. .-.+.++.|++|++.|.|.+. .
T Consensus 362 ~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~ 441 (541)
T TIGR03388 362 AINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNS 441 (541)
T ss_pred EECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCC
Confidence 45544320 123677889999999999753 3
Q ss_pred CeeeEEEeCceeEEEeec-Ccc-----------ceeeEEeEEEEccCceEEEEEEeCCCCcceEEEEeec
Q 009054 226 HSLNFRIQGHKMKLVEVE-GTH-----------TIQTTYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTR 283 (545)
Q Consensus 226 ~~~~~~i~gh~~~via~D-G~~-----------~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~ 283 (545)
..++||+|||.|+|++.. |.+ ..|...|++.+.++.-+-+-++++ .||.|.+|||..
T Consensus 442 ~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~ad-NPG~W~~HCHi~ 510 (541)
T TIGR03388 442 ETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVAD-NPGVWAFHCHIE 510 (541)
T ss_pred CCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECC-CCeEeeeeccch
Confidence 468999999999999986 332 247789999999999998888888 799999999965
No 37
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.86 E-value=1.4e-07 Score=102.36 Aligned_cols=231 Identities=17% Similarity=0.254 Sum_probs=138.7
Q ss_pred CeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEE-eecCccceeeEEeEEEEccCceEEEEEEeCC
Q 009054 193 DGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLV-EVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQ 271 (545)
Q Consensus 193 ~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 271 (545)
..++|||+.. .|.|+++.|+++++++.|.... ...+|.||..+.-- ..||.+ . ..-.|.||+.+..-+++++
T Consensus 49 ~vi~vNGq~P-GPtI~~~~GD~v~V~V~N~L~~-~ttIHWHGl~q~~t~w~DGv~---~--TQcPI~PG~sftY~F~~~d 121 (596)
T PLN00044 49 EAIGINGQFP-GPALNVTTNWNLVVNVRNALDE-PLLLTWHGVQQRKSAWQDGVG---G--TNCAIPAGWNWTYQFQVKD 121 (596)
T ss_pred EEEEEcCcCC-CCcEEEECCCEEEEEEEeCCCC-CccEEECCccCCCCccccCCC---C--CcCCcCCCCcEEEEEEeCC
Confidence 4799999986 7999999999999999999874 44777788654332 369863 2 3468999999999999965
Q ss_pred CCcceEEEEeecccCCccceEEEEEecCCCCCCCCCCCCC-CC-ccc-----ccccccccccccCCCCCCCCCCCCCCCC
Q 009054 272 PPQDFYIAVSTRFTNKVLTSTGTLHYSNSAHPVSGPVPGG-PT-TQI-----DWSLNQARSIRTNLTASGPRPNPQGSYH 344 (545)
Q Consensus 272 ~~g~y~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~-p~-~~~-----~~~~~~~~~l~~~l~~~~~~p~p~~~~~ 344 (545)
.+|+||+++|....- .....+-|...+... .+.|.. +. .+. +|.......+...+..
T Consensus 122 q~GT~WYHsH~~~Q~-~~Gl~GalII~~~~~---~~~P~~~~~~~e~~i~l~DW~~~~~~~~~~~l~~------------ 185 (596)
T PLN00044 122 QVGSFFYAPSTALHR-AAGGYGAITINNRDV---IPIPFGFPDGGDITLFIADWYARDHRALRRALDA------------ 185 (596)
T ss_pred CCceeEeeccchhhh-hCcCeeEEEEcCccc---ccccccCCcccceEEEecccccCCHHHHHHHHhc------------
Confidence 699999999854211 111223333222211 111110 10 010 0100000000000000
Q ss_pred ccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcEE
Q 009054 345 YGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFI 424 (545)
Q Consensus 345 ~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v 424 (545)
.. .........|||+......... . + ......++.++.|+++
T Consensus 186 ------------g~---~~~~~d~~lING~g~~~~n~~~----------------~---~----~~~~~~~i~V~~Gk~y 227 (596)
T PLN00044 186 ------------GD---LLGAPDGVLINAFGPYQYNDSL----------------V---P----PGITYERINVDPGKTY 227 (596)
T ss_pred ------------CC---CCCCCCceEEcccCccccCCcc----------------c---c----CCCccceEEECCCCEE
Confidence 00 0000011245654210000000 0 0 0011236889999999
Q ss_pred EEEEEcCC-CCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCc-c--cee
Q 009054 425 EIVFQNHE-NIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNV-G--MWN 495 (545)
Q Consensus 425 ~~~i~N~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnp-G--~w~ 495 (545)
+|.|+|.+ ...--|+|-||+|.|++..+. + ..|..-|++.|.+|++.-|.++++.+ | .||
T Consensus 228 RlRiINaa~~~~~~fsIdgH~mtVIa~DG~-~----------v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i 291 (596)
T PLN00044 228 RFRVHNVGVATSLNFRIQGHNLLLVEAEGS-Y----------TSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYV 291 (596)
T ss_pred EEEEEEccCCceEEEEECCCEEEEEEeCCc-c----------cCceeeeeEEEcCCceEEEEEECCCCCCCceEE
Confidence 99999988 556889999999999998642 2 24667799999999999999999875 5 466
No 38
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.83 E-value=4.3e-09 Score=93.63 Aligned_cols=89 Identities=18% Similarity=0.194 Sum_probs=72.5
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCC-------------Ccc--CCcCCCCCeEEEEEEeCCcc
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGV-------------YGT--TCPIPPGKNFTYILQVKDQI 124 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv-------------~~~--q~~i~pG~~~~y~~~~~~~~ 124 (545)
.+.+.++.|+.+++.+.|.....+.+|+||.....-...++. +.. ...|+||+..+.+|.+ +.+
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~-~~~ 111 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA-DNP 111 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE-TST
T ss_pred cceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEe-ecc
Confidence 578999999999999999999999999999876421111111 111 3458999999999996 689
Q ss_pred eeeeeecCchhhhhcCeeeEEEEeC
Q 009054 125 GSYFYFPSVGFQKAAGGFGGIRILS 149 (545)
Q Consensus 125 Gt~wYH~H~~~~~~~Gl~G~liV~~ 149 (545)
|.|.||||...+...||.+.+.|.+
T Consensus 112 G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 112 GPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEEEEESSHHHHHTT-EEEEEECH
T ss_pred eEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999976
No 39
>PLN02191 L-ascorbate oxidase
Probab=98.65 E-value=1.4e-06 Score=95.24 Aligned_cols=250 Identities=14% Similarity=0.171 Sum_probs=139.8
Q ss_pred CCeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEE-EeecCccceeeEEeEEEEccCceEEEEEEeC
Q 009054 192 PDGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKL-VEVEGTHTIQTTYSSLDVHVGQSYSVLVTMD 270 (545)
Q Consensus 192 ~~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~~~v~l~pgeR~dv~v~~~ 270 (545)
...++|||+.. .|.|+++.|+++++++.|.-......+|.||....- -..||.+- +..-.|.||+.+...++++
T Consensus 42 ~~v~~vNg~~p-GP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~g----vtq~pI~PG~s~~Y~f~~~ 116 (574)
T PLN02191 42 GAVMTVNGQFP-GPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAG----VTQCAINPGETFTYKFTVE 116 (574)
T ss_pred eeEEEECCcCC-CCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCc----cccCCcCCCCeEEEEEECC
Confidence 36899999985 699999999999999999866455677777765321 12577642 2234699999999999998
Q ss_pred CCCcceEEEEeecccCCccceEEEEEecCCCCCCCCCCCCCCCccc-----ccccccccccccCCCCCCCCCCCCCCCCc
Q 009054 271 QPPQDFYIAVSTRFTNKVLTSTGTLHYSNSAHPVSGPVPGGPTTQI-----DWSLNQARSIRTNLTASGPRPNPQGSYHY 345 (545)
Q Consensus 271 ~~~g~y~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~-----~~~~~~~~~l~~~l~~~~~~p~p~~~~~~ 345 (545)
.+|+||+++|....- .....+.|.......+. .+.....+. +|...........+.. .+ .
T Consensus 117 -~~GT~wYHsH~~~q~-~~Gl~G~liV~~~~~~~---~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~---~~--~----- 181 (574)
T PLN02191 117 -KPGTHFYHGHYGMQR-SAGLYGSLIVDVAKGPK---ERLRYDGEFNLLLSDWWHESIPSQELGLSS---KP--M----- 181 (574)
T ss_pred -CCeEEEEeeCcHHHH-hCCCEEEEEEccCCCCC---CCCCCCeeEEEeeeccccCChHHHHHhhcc---CC--C-----
Confidence 589999999953211 11122333332221110 011000110 1100000000000000 00 0
Q ss_pred cccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccc-eEEecCCCcEE
Q 009054 346 GLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDT-SVMGADFRGFI 424 (545)
Q Consensus 346 ~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~v 424 (545)
+ .........|||+.....+... .. ..+. . ...|....++ .+. .++.++.|+++
T Consensus 182 ------~---------~~~~~d~~liNG~g~~~~~~~~----~~-~~~~-~-~~~~~~~~n~---~~~p~~~~v~~G~~y 236 (574)
T PLN02191 182 ------R---------WIGEAQSILINGRGQFNCSLAA----QF-SNGT-E-LPMCTFKEGD---QCAPQTLRVEPNKTY 236 (574)
T ss_pred ------C---------cCCCCCceEECCCCCCCCcccc----cc-cCCc-c-cccceeccCC---CCCceEEEEcCCCEE
Confidence 0 0000112356654211100000 00 0000 0 0000000000 122 26899999999
Q ss_pred EEEEEcCC-CCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCC-cc-ceeee
Q 009054 425 EIVFQNHE-NIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDN-VG-MWNVR 497 (545)
Q Consensus 425 ~~~i~N~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adn-pG-~w~~H 497 (545)
+|.|+|.+ ...+-|+|.||+|.|++..+.. ..|..-|++.|.+|+..-|.++++. +| .|-++
T Consensus 237 RlRiINa~~~~~~~~~idgH~~tVIa~DG~~-----------v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ir 301 (574)
T PLN02191 237 RIRLASTTALASLNLAVQGHKLVVVEADGNY-----------ITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYIS 301 (574)
T ss_pred EEEEEecCCceeEEEEECCCeEEEEEcCCee-----------ccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEE
Confidence 99999987 5679999999999999986432 2466789999999999999999976 44 44433
No 40
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.62 E-value=5.5e-08 Score=83.62 Aligned_cols=90 Identities=16% Similarity=0.071 Sum_probs=68.2
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCC-cc
Q 009054 414 SVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDN-VG 492 (545)
Q Consensus 414 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adn-pG 492 (545)
+++.++.|+.|++.+.|.....+.+|+||...---...+|.. .. -.-.|.|++..+.+|+++. +|
T Consensus 26 PtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~-------~~-------~~~~i~pG~~~~Y~~~~~~~~G 91 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVP-------GV-------TQCPIAPGESFTYEFTANQQAG 91 (117)
T ss_dssp EEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGT-------TT-------SGSSBSTTEEEEEEEEESSCSE
T ss_pred CEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcc-------cc-------cceeEEeecceeeeEeeecccc
Confidence 357899999999999999989999999997531000001100 00 0124788999999999988 99
Q ss_pred ceeeeecchhhhhcceEEEEEEeCC
Q 009054 493 MWNVRSEFWARQYLGQQFYLRVYSP 517 (545)
Q Consensus 493 ~w~~HCHil~H~d~GMm~~~~V~~~ 517 (545)
.|.||||...|...||...+.|.++
T Consensus 92 t~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 92 TYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ceeEeeCCCchhcCcCEEEEEEcCC
Confidence 9999999998877999999999764
No 41
>PRK02710 plastocyanin; Provisional
Probab=98.59 E-value=7.5e-07 Score=76.89 Aligned_cols=74 Identities=19% Similarity=0.330 Sum_probs=55.1
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhc
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAA 139 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~ 139 (545)
-+.|++++||+| +++|.-..++++.+.|..- .... ...+.||++++|.|.. +|+|-|+|- .+...
T Consensus 46 P~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~~--~~~~------~~~~~pg~t~~~tF~~---~G~y~y~C~--~H~~~ 110 (119)
T PRK02710 46 PSTLTIKAGDTV--KWVNNKLAPHNAVFDGAKE--LSHK------DLAFAPGESWEETFSE---AGTYTYYCE--PHRGA 110 (119)
T ss_pred CCEEEEcCCCEE--EEEECCCCCceEEecCCcc--cccc------ccccCCCCEEEEEecC---CEEEEEEcC--CCccC
Confidence 478999999985 5678777788887664310 0011 1257999999999982 899999997 45568
Q ss_pred CeeeEEEEe
Q 009054 140 GGFGGIRIL 148 (545)
Q Consensus 140 Gl~G~liV~ 148 (545)
||.|.|+|+
T Consensus 111 gM~G~I~V~ 119 (119)
T PRK02710 111 GMVGKITVE 119 (119)
T ss_pred CcEEEEEEC
Confidence 999999984
No 42
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.52 E-value=2.2e-07 Score=78.27 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=45.8
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcC
Q 009054 61 PDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAG 140 (545)
Q Consensus 61 P~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~G 140 (545)
.+|+++.|++|+|+++|.....+.+...++.. ...|.||++.++.|+ +.++|+|=|+|-.+..
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~------------~~~l~~g~~~~~~f~-~~~~G~y~~~C~~~~~---- 97 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDLGI------------SKVLPPGETATVTFT-PLKPGEYEFYCTMHPN---- 97 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGGTE------------EEEE-TT-EEEEEEE-E-S-EEEEEB-SSS-T----
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCCce------------EEEECCCCEEEEEEc-CCCCEEEEEEcCCCCc----
Confidence 57999999999999999987776666555422 246999999999998 5789999999997762
Q ss_pred eeeEEEE
Q 009054 141 GFGGIRI 147 (545)
Q Consensus 141 l~G~liV 147 (545)
|.|-|||
T Consensus 98 m~G~liV 104 (104)
T PF13473_consen 98 MKGTLIV 104 (104)
T ss_dssp TB-----
T ss_pred ceecccC
Confidence 6677765
No 43
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.39 E-value=2.6e-05 Score=84.17 Aligned_cols=228 Identities=18% Similarity=0.270 Sum_probs=141.8
Q ss_pred CeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCcee-EEEeecCccceeeEEeEEEEccCceEEEEEEeCC
Q 009054 193 DGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKM-KLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQ 271 (545)
Q Consensus 193 ~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~-~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 271 (545)
..++|||+-. .|.|.++.|+++.++++|-.. ..+.+|.+|... .--..||.++ ..=.|.|||.|..-++.++
T Consensus 48 ~vi~iNG~fP-GP~I~~~~gD~ivV~v~N~~~-~~~sihWhGv~q~kn~w~DG~~~-----TqCPI~Pg~~~tY~F~v~~ 120 (563)
T KOG1263|consen 48 QVITINGQFP-GPTINAEEGDTIVVNVVNRLD-EPFSIHWHGVRQRKNPWQDGVYI-----TQCPIQPGENFTYRFTVKD 120 (563)
T ss_pred eeEeecCCCC-CCeEEEEeCCEEEEEEEeCCC-CceEEEeccccccCCccccCCcc-----ccCCcCCCCeEEEEEEeCC
Confidence 5899999986 799999999999999999955 666777777543 2233499432 2336899999999999998
Q ss_pred CCcceEEEEeecccCCccceEEEEEecCCCCCCCCCCCCCCCccc-----ccccc-cccccccCCCCCCCCCCCCCCCCc
Q 009054 272 PPQDFYIAVSTRFTNKVLTSTGTLHYSNSAHPVSGPVPGGPTTQI-----DWSLN-QARSIRTNLTASGPRPNPQGSYHY 345 (545)
Q Consensus 272 ~~g~y~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~-----~~~~~-~~~~l~~~l~~~~~~p~p~~~~~~ 345 (545)
..|+||.+.+....-. ....+-|........+ .+.+ .|..+. +|-.+ ..+.++..+......|.+
T Consensus 121 q~GT~~yh~h~~~~Ra-~G~~G~liI~~~~~~p-~pf~-~pd~E~~ill~dW~~~~~~~~l~~~~~~~~~~p~~------ 191 (563)
T KOG1263|consen 121 QIGTLWYHSHVSWQRA-TGVFGALIINPRPGLP-VPFP-KPDKEFTILLGDWYKNLNHKNLKNFLDRTGALPNP------ 191 (563)
T ss_pred cceeEEEeeccccccc-cCceeEEEEcCCccCC-CCCC-CCCceeEEEeEeeccccCHHHHHHhhccCCCCCCC------
Confidence 8999999998653211 1123333332221100 1111 121111 12111 111111111111111110
Q ss_pred cccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcEEE
Q 009054 346 GLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFIE 425 (545)
Q Consensus 346 ~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ 425 (545)
.....|||+.- ..+.|...+.+..|++..
T Consensus 192 --------------------~D~~~iNg~~g-------------------------------~~~~~~~~l~v~pGktY~ 220 (563)
T KOG1263|consen 192 --------------------SDGVLINGRSG-------------------------------FLYNCTPTLTVEPGKTYR 220 (563)
T ss_pred --------------------CCceEECCCCC-------------------------------cccCceeEEEEcCCCEEE
Confidence 11135666541 123456778999999999
Q ss_pred EEEEcCC--CCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCC-cc-ceeeeec
Q 009054 426 IVFQNHE--NIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDN-VG-MWNVRSE 499 (545)
Q Consensus 426 ~~i~N~~--~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adn-pG-~w~~HCH 499 (545)
|.|.|.+ ...+ |.|=||...||+..+ .+ ..|.--|++.|-+|++..+..++|. |+ -|+-=|=
T Consensus 221 lRiiN~g~~~~l~-F~I~~H~ltvVe~Dg-~y----------~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~ 286 (563)
T KOG1263|consen 221 LRIINAGLNTSLN-FSIANHQLTVVEVDG-AY----------TKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASP 286 (563)
T ss_pred EEEEccccccceE-EEECCeEEEEEEecc-eE----------EeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEe
Confidence 9999988 3345 999999999999863 22 2244569999999999999999976 55 3555444
No 44
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.31 E-value=3.5e-06 Score=70.27 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=56.9
Q ss_pred cCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCcc---CCcCCCCCeEEEEEEeCCcceeeeeecCchh
Q 009054 59 PGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGT---TCPIPPGKNFTYILQVKDQIGSYFYFPSVGF 135 (545)
Q Consensus 59 pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~---q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~ 135 (545)
-...|+|++||+| +++|.-..++++.++...... ...+..+.. ...+.||+++++.|.. +|+|+|||- .
T Consensus 15 ~P~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~-~~~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~--~ 86 (99)
T TIGR02656 15 EPAKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPA-GVKELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE--P 86 (99)
T ss_pred eCCEEEECCCCEE--EEEECCCCCceEEECCCCCcc-chhhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC--C
Confidence 3467999999985 566876677877776432110 000111110 2347899999998872 899999998 6
Q ss_pred hhhcCeeeEEEEe
Q 009054 136 QKAAGGFGGIRIL 148 (545)
Q Consensus 136 ~~~~Gl~G~liV~ 148 (545)
+..+||.|.|+|+
T Consensus 87 H~~aGM~G~I~V~ 99 (99)
T TIGR02656 87 HRGAGMVGKITVE 99 (99)
T ss_pred ccccCCEEEEEEC
Confidence 7778999999985
No 45
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.09 E-value=1.6e-05 Score=85.45 Aligned_cols=101 Identities=14% Similarity=0.132 Sum_probs=70.7
Q ss_pred EEecCCCeeEE--EEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEE
Q 009054 40 GDIYPLGVRQQ--GILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYI 117 (545)
Q Consensus 40 ~~~~~dG~~~~--~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~ 117 (545)
..+..+|.+.. |.+..-.|--+.|+|++||.|.++++|.-...-.+ ||+.+.+. ++..-+.||++.+..
T Consensus 532 ~~v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~-------nI~~dv~PG~t~svt 602 (635)
T PRK02888 532 SKVIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY-------GVNMEVAPQATASVT 602 (635)
T ss_pred cceEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc-------CccEEEcCCceEEEE
Confidence 44566776555 44555566556899999999999999953211122 66654321 113457899999999
Q ss_pred EEeCCcceeeeeecCch-hhhhcCeeeEEEEeCC
Q 009054 118 LQVKDQIGSYFYFPSVG-FQKAAGGFGGIRILSR 150 (545)
Q Consensus 118 ~~~~~~~Gt~wYH~H~~-~~~~~Gl~G~liV~~~ 150 (545)
|+ ++++|+|||||..- .....+|.|.|+|+++
T Consensus 603 F~-adkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 603 FT-ADKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred EE-cCCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 99 58899999999864 2222489999999873
No 46
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.07 E-value=9.1e-06 Score=67.77 Aligned_cols=78 Identities=19% Similarity=0.325 Sum_probs=54.7
Q ss_pred cCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCC------Ccc-CCcCCCCCeEEEEEEeCCcceeeeeec
Q 009054 59 PGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGV------YGT-TCPIPPGKNFTYILQVKDQIGSYFYFP 131 (545)
Q Consensus 59 pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv------~~~-q~~i~pG~~~~y~~~~~~~~Gt~wYH~ 131 (545)
--..|++++||+| ++.|....++++.+=-- ....|. +.- ...+.||+++++.|+ ++|+|.|+|
T Consensus 15 ~P~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~-----~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C 84 (99)
T PF00127_consen 15 DPSEITVKAGDTV--TFVNNDSMPHNVVFVAD-----GMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYC 84 (99)
T ss_dssp ESSEEEEETTEEE--EEEEESSSSBEEEEETT-----SSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEE
T ss_pred eCCEEEECCCCEE--EEEECCCCCceEEEecc-----cccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEc
Confidence 3478999999985 56776666666665220 000110 000 124789999999998 599999999
Q ss_pred CchhhhhcCeeeEEEEe
Q 009054 132 SVGFQKAAGGFGGIRIL 148 (545)
Q Consensus 132 H~~~~~~~Gl~G~liV~ 148 (545)
- . +...||.|.|+|+
T Consensus 85 ~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 85 T-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp T-T-TGGTTSEEEEEEE
T ss_pred C-C-CcccCCEEEEEEC
Confidence 9 4 8888999999995
No 47
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.06 E-value=1.2e-05 Score=73.38 Aligned_cols=92 Identities=16% Similarity=0.167 Sum_probs=76.3
Q ss_pred ceEEecCCCcEEEEEEEcCCC-CCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCC-
Q 009054 413 TSVMGADFRGFIEIVFQNHEN-IVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDN- 490 (545)
Q Consensus 413 ~~~~~~~~g~~v~~~i~N~~~-~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adn- 490 (545)
...+.++.|++++|.|.|.+. ..+.|++.||+|+|++..+... .|...|++.|.+|+.+.|.++++.
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~v-----------~p~~~~~l~l~~G~R~dvlv~~~~~ 127 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAADGVPV-----------EPYKVDTLVLAPGQRYDVLVTADQP 127 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEETTEEE-----------EEEEESBEEE-TTEEEEEEEEECSC
T ss_pred cceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeeccccc-----------cccccceEEeeCCeEEEEEEEeCCC
Confidence 456889999999999999884 4799999999999999964321 267789999999999999999987
Q ss_pred ccceeeee----cchhhhhcceEEEEEEe
Q 009054 491 VGMWNVRS----EFWARQYLGQQFYLRVY 515 (545)
Q Consensus 491 pG~w~~HC----Hil~H~d~GMm~~~~V~ 515 (545)
+|.|.++| +...+...++...+.+.
T Consensus 128 ~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y 156 (159)
T PF00394_consen 128 PGNYWIRASYQHDSINDPQNGNALAILRY 156 (159)
T ss_dssp SSEEEEEEEESSSSSHSHGGGTTEEEEEE
T ss_pred CCeEEEEEecccCCCccCCCcEEEEEEEE
Confidence 99999999 55677888888877654
No 48
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=98.01 E-value=0.00014 Score=65.25 Aligned_cols=97 Identities=18% Similarity=0.175 Sum_probs=72.2
Q ss_pred EEEEEcCcccC-ceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCC-------CCCCCC----CccC------CcCCCC
Q 009054 50 QGILINGQFPG-PDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRN-------SYEDGV----YGTT------CPIPPG 111 (545)
Q Consensus 50 ~~~~~ng~~pg-P~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~-------~~~DGv----~~~q------~~i~pG 111 (545)
+.+-|||+-.| |+|.+-.|=+|.|+|.|.-..++++-. -+.++ ...||. +|.+ ..|.+|
T Consensus 73 ~~fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~i---v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~G 149 (195)
T TIGR03094 73 YPFNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKL---LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSG 149 (195)
T ss_pred ccccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEE---ecCCCCCCCccccccCceeEeecccccCcccccccccc
Confidence 34778998777 899999999999999999766665543 11111 235664 2221 236678
Q ss_pred CeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCC
Q 009054 112 KNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSR 150 (545)
Q Consensus 112 ~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~ 150 (545)
++..=.|. +-++|+|||=|-.-.|..+||+|-+||...
T Consensus 150 qs~sg~~~-~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 150 HSRSGWWN-DTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred ceeEEEec-cCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 88555555 678999999999999999999999999874
No 49
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=98.00 E-value=3.3e-05 Score=62.14 Aligned_cols=74 Identities=11% Similarity=0.061 Sum_probs=53.1
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhc
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAA 139 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~ 139 (545)
-+.|++++||+| +++|.-..++++++....- ...+-. ...+.||+++++.|. ++|+|-|||-.|.
T Consensus 10 P~~i~v~~GdtV--t~~N~d~~~Hnv~~~~g~~---~~~~~~---~~~~~~g~~~~~tf~---~~G~y~y~C~~Hp---- 74 (83)
T TIGR02657 10 TPELHVKVGDTV--TWINREAMPHNVHFVAGVL---GEAALK---GPMMKKEQAYSLTFT---EAGTYDYHCTPHP---- 74 (83)
T ss_pred CCEEEECCCCEE--EEEECCCCCccEEecCCCC---cccccc---ccccCCCCEEEEECC---CCEEEEEEcCCCC----
Confidence 478999999996 5688877788888764311 011100 123578888888775 5999999998875
Q ss_pred CeeeEEEEe
Q 009054 140 GGFGGIRIL 148 (545)
Q Consensus 140 Gl~G~liV~ 148 (545)
+|.|.++|+
T Consensus 75 ~M~G~v~V~ 83 (83)
T TIGR02657 75 FMRGKVVVE 83 (83)
T ss_pred CCeEEEEEC
Confidence 399999985
No 50
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.86 E-value=5.1e-05 Score=67.87 Aligned_cols=89 Identities=9% Similarity=0.011 Sum_probs=58.2
Q ss_pred eEEecCCCcEEEEEEEcCCC-CCCceeecCCceEEEeeccCcCCCC-CCCCCCCCCCCccceEEeCC---C--CEEEEEE
Q 009054 414 SVMGADFRGFIEIVFQNHEN-IVQSWHIDGYNFWVVGMNGGVWTPA-SRNEYNLRDAVSRCTTQVYP---K--SWTAIYV 486 (545)
Q Consensus 414 ~~~~~~~g~~v~~~i~N~~~-~~HP~HlHG~~F~Vl~~g~g~~~~~-~~~~~~~~~p~~rDTv~vp~---~--~~v~irf 486 (545)
+.+.++.|+.|++.+.|.+. ..|.|-||.+.- .+... ..... |..-..-.+|+ + ++..+.|
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~--------~~~~~p~mdG~----~~~~~~~i~p~~~~g~~~~~~~tf 119 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDTDSGHNFDISKRGP--------PYPYMPGMDGL----GFVAGTGFLPPPKSGKFGYTDFTY 119 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCCCccccEEeecCCC--------ccccccccCCC----CccccCcccCCCCCCccceeEEEE
Confidence 35789999999999999874 567776664321 11000 00000 11111112222 2 2467889
Q ss_pred EeCCccceeeeecchhhhhcceEEEEEE
Q 009054 487 ALDNVGMWNVRSEFWARQYLGQQFYLRV 514 (545)
Q Consensus 487 ~adnpG~w~~HCHil~H~d~GMm~~~~V 514 (545)
+++.+|.|.||||+..|...||-..+.|
T Consensus 120 ~f~~aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 120 HFSTAGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred ECCCCeEEEEEcCChhHHHCCCEEEEEE
Confidence 8889999999999999999999999887
No 51
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.86 E-value=0.00021 Score=65.66 Aligned_cols=100 Identities=20% Similarity=0.240 Sum_probs=72.8
Q ss_pred EEEEEcCcccC-ceEEEecCCEEEEEEEeCCCCCceEee--CCccC--CCCCCCCCC----Ccc------CCcCCCCCeE
Q 009054 50 QGILINGQFPG-PDIYSVTNDNLIINVHNSLPEPFLISW--NGVQQ--RRNSYEDGV----YGT------TCPIPPGKNF 114 (545)
Q Consensus 50 ~~~~~ng~~pg-P~i~v~~Gd~v~v~~~N~l~~~~~iH~--HG~~~--~~~~~~DGv----~~~------q~~i~pG~~~ 114 (545)
+.+.|||.--| ++|.+-.|-+|.|+|+|.-.-+|++-. -+..+ ......||. +|. ...|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 47888997665 899999999999999998654443321 11111 112234553 111 2358899999
Q ss_pred EEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCC
Q 009054 115 TYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSR 150 (545)
Q Consensus 115 ~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~ 150 (545)
.-.|. +-++|+|||=|-...|..+||++-|+|...
T Consensus 154 ~~~~~-~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 154 SGVYN-DLPAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred eEEEc-cCCCceEEEEccCCChhhcCCEEEEEEecC
Confidence 87776 457999999999999999999999999874
No 52
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.49 E-value=0.00044 Score=57.57 Aligned_cols=83 Identities=13% Similarity=0.012 Sum_probs=58.4
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccc
Q 009054 414 SVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGM 493 (545)
Q Consensus 414 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~ 493 (545)
..+.++.|++|+|+ |.+...|-+.++...+..-.. ........+++.+.||+...+.|.. ||.
T Consensus 17 ~~i~v~~G~~V~~~--N~~~~~H~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~pG~t~~~tF~~--~G~ 79 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNKGGPHNVVFDEDAVPAGVK-------------ELAKSLSHKDLLNSPGESYEVTFST--PGT 79 (99)
T ss_pred CEEEECCCCEEEEE--ECCCCCceEEECCCCCccchh-------------hhcccccccccccCCCCEEEEEeCC--CEE
Confidence 34789999998885 777778888776432211100 0001123467888999988776654 999
Q ss_pred eeeeecchhhhhcceEEEEEEe
Q 009054 494 WNVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 494 w~~HCHil~H~d~GMm~~~~V~ 515 (545)
|.|||- .|...||...+.|.
T Consensus 80 y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 80 YTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred EEEEcC--CccccCCEEEEEEC
Confidence 999998 59999999999873
No 53
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.41 E-value=0.00064 Score=59.04 Aligned_cols=59 Identities=14% Similarity=0.283 Sum_probs=50.4
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.+.++.|+.|+|.+.|.+..+|.+-++++.+ ...++|++...++|.++.||.|
T Consensus 62 ~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi---------------------------s~~I~pGet~TitF~adKpG~Y 114 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKSPISEGFSIDAYGI---------------------------SEVIKAGETKTISFKADKAGAF 114 (135)
T ss_pred EEEECCCCEEEEEEEeCCCCccceEECCCCc---------------------------ceEECCCCeEEEEEECCCCEEE
Confidence 4789999999999999998888877776421 2567889999999999999999
Q ss_pred eeeecc
Q 009054 495 NVRSEF 500 (545)
Q Consensus 495 ~~HCHi 500 (545)
.|||-+
T Consensus 115 ~y~C~~ 120 (135)
T TIGR03096 115 TIWCQL 120 (135)
T ss_pred EEeCCC
Confidence 999977
No 54
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.41 E-value=0.00076 Score=58.15 Aligned_cols=75 Identities=17% Similarity=0.169 Sum_probs=54.9
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcC
Q 009054 61 PDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAG 140 (545)
Q Consensus 61 P~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~G 140 (545)
-+|+|++||+ |++.|.....++++.=+.- ..+|.- .....+|+++++.|. .+|+|-|+|-. +...|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~-----~~~g~~--~~~~~~~~s~~~Tfe---~~G~Y~Y~C~P--H~~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGM-----DPEGSG--TLKAGINESFTHTFE---TPGEYTYYCTP--HPGMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCC-----Cccccc--ccccCCCcceEEEec---ccceEEEEecc--CCCCC
Confidence 3799999999 6788988778888766542 113322 123445577777776 39999999986 56789
Q ss_pred eeeEEEEeC
Q 009054 141 GFGGIRILS 149 (545)
Q Consensus 141 l~G~liV~~ 149 (545)
|.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 55
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.38 E-value=0.001 Score=56.74 Aligned_cols=75 Identities=12% Similarity=0.084 Sum_probs=50.3
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEee-CCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCchhhhh
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISW-NGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKA 138 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~-HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~ 138 (545)
...|+|++||+|+....|. ++++.+ .+. ..+|... ..-.+|+++++.|. ++|+|=|+|- .+..
T Consensus 14 P~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~------~p~g~~~--~~s~~g~~~~~tF~---~~G~Y~Y~C~--pH~~ 77 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK---GHNVETIKGM------IPEGAEA--FKSKINEEYTVTVT---EEGVYGVKCT--PHYG 77 (116)
T ss_pred CCEEEECCCCEEEEEECCC---CeeEEEccCC------CcCCccc--ccCCCCCEEEEEeC---CCEEEEEEcC--CCcc
Confidence 4679999999976655554 455554 221 1122211 12245777666664 5899999998 5778
Q ss_pred cCeeeEEEEeCC
Q 009054 139 AGGFGGIRILSR 150 (545)
Q Consensus 139 ~Gl~G~liV~~~ 150 (545)
.||.|.|+|.++
T Consensus 78 ~GM~G~V~Vg~~ 89 (116)
T TIGR02375 78 MGMVALIQVGDP 89 (116)
T ss_pred CCCEEEEEECCC
Confidence 899999999874
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.07 E-value=0.0031 Score=53.74 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=51.0
Q ss_pred CceEEEecCCEEEEEEEeCC-CCCceEeeCCccCCCCCCCC-CCCccCCcCCCCCeEEEEEEeCCcceeeeeecCchhhh
Q 009054 60 GPDIYSVTNDNLIINVHNSL-PEPFLISWNGVQQRRNSYED-GVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQK 137 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l-~~~~~iH~HG~~~~~~~~~D-Gv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~ 137 (545)
...|+|++||+|. ++|+. ..++++..-+ . ...| + .....||++|+|.|. ++|+|=|+|-. +.
T Consensus 41 P~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~-~~f~s~----~~~~~~G~t~s~Tf~---~~G~Y~Y~C~p--H~ 104 (115)
T TIGR03102 41 PPAIRVDPGTTVV--WEWTGEGGGHNVVSDG----D-GDLDES----ERVSEEGTTYEHTFE---EPGIYLYVCVP--HE 104 (115)
T ss_pred CCEEEECCCCEEE--EEECCCCCCEEEEECC----C-CCcccc----ccccCCCCEEEEEec---CCcEEEEEccC--CC
Confidence 4679999999965 77544 4666665321 0 1112 1 123578999999996 59999999985 45
Q ss_pred hcCeeeEEEEe
Q 009054 138 AAGGFGGIRIL 148 (545)
Q Consensus 138 ~~Gl~G~liV~ 148 (545)
..||.|.|+|+
T Consensus 105 ~~gM~G~I~V~ 115 (115)
T TIGR03102 105 ALGMKGAVVVE 115 (115)
T ss_pred CCCCEEEEEEC
Confidence 67899999984
No 57
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.67 E-value=0.0046 Score=51.88 Aligned_cols=62 Identities=8% Similarity=0.119 Sum_probs=43.4
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.+.++.|+.+.+++.|.+...|-|.+-+. .-...+++|+...+.|.++.||.|
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i~~~---------------------------~~~~~l~~g~~~~~~f~~~~~G~y 88 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVIPDL---------------------------GISKVLPPGETATVTFTPLKPGEY 88 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEEGGG---------------------------TEEEEE-TT-EEEEEEEE-S-EEE
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEECCC---------------------------ceEEEECCCCEEEEEEcCCCCEEE
Confidence 47899999999999999877776666551 122778899999999999999999
Q ss_pred eeeecchhhhh
Q 009054 495 NVRSEFWARQY 505 (545)
Q Consensus 495 ~~HCHil~H~d 505 (545)
-|+|-+ |.+
T Consensus 89 ~~~C~~--~~~ 97 (104)
T PF13473_consen 89 EFYCTM--HPN 97 (104)
T ss_dssp EEB-SS--S-T
T ss_pred EEEcCC--CCc
Confidence 999997 454
No 58
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.19 E-value=0.03 Score=46.53 Aligned_cols=82 Identities=7% Similarity=-0.026 Sum_probs=54.1
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCC-CCCCCCCCCCccceEEeCCCCEEEEEEEeCCcc
Q 009054 414 SVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPAS-RNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVG 492 (545)
Q Consensus 414 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~-~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG 492 (545)
..+.++.|++|.|+.. +...|.+.+= .. .+.... .... +..-.+..+.+|+...+.|. .||
T Consensus 17 ~~i~V~~G~tV~~~n~--~~~~Hnv~~~-------~~---~~~~~~~~~~~----~~~~~~~~~~~G~~~~~tF~--~~G 78 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNN--DSMPHNVVFV-------AD---GMPAGADSDYV----PPGDSSPLLAPGETYSVTFT--KPG 78 (99)
T ss_dssp SEEEEETTEEEEEEEE--SSSSBEEEEE-------TT---SSHTTGGHCHH----STTCEEEEBSTTEEEEEEEE--SSE
T ss_pred CEEEECCCCEEEEEEC--CCCCceEEEe-------cc---ccccccccccc----CccccceecCCCCEEEEEeC--CCe
Confidence 4578999999988554 5566665542 21 111000 0000 01115677888998777776 899
Q ss_pred ceeeeecchhhhhcceEEEEEEe
Q 009054 493 MWNVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 493 ~w~~HCHil~H~d~GMm~~~~V~ 515 (545)
.|.|+|- - |...||-..+.|.
T Consensus 79 ~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 79 TYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp EEEEEET-T-TGGTTSEEEEEEE
T ss_pred EEEEEcC-C-CcccCCEEEEEEC
Confidence 9999999 4 9999999999884
No 59
>PRK02710 plastocyanin; Provisional
Probab=95.62 E-value=0.043 Score=47.24 Aligned_cols=71 Identities=13% Similarity=0.021 Sum_probs=50.3
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.+.++.|++|+| .|.+...|.+.+.+.. .+ ...-..+.+++...+.|.. ||.|
T Consensus 48 ~i~v~~Gd~V~~--~N~~~~~H~v~~~~~~---------~~--------------~~~~~~~~pg~t~~~tF~~--~G~y 100 (119)
T PRK02710 48 TLTIKAGDTVKW--VNNKLAPHNAVFDGAK---------EL--------------SHKDLAFAPGESWEETFSE--AGTY 100 (119)
T ss_pred EEEEcCCCEEEE--EECCCCCceEEecCCc---------cc--------------cccccccCCCCEEEEEecC--CEEE
Confidence 367899999887 5777778887654221 00 0011346778877766654 9999
Q ss_pred eeeecchhhhhcceEEEEEE
Q 009054 495 NVRSEFWARQYLGQQFYLRV 514 (545)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V 514 (545)
.|+|= .|...||-..+.|
T Consensus 101 ~y~C~--~H~~~gM~G~I~V 118 (119)
T PRK02710 101 TYYCE--PHRGAGMVGKITV 118 (119)
T ss_pred EEEcC--CCccCCcEEEEEE
Confidence 99997 5988999999987
No 60
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.31 E-value=0.061 Score=58.52 Aligned_cols=75 Identities=11% Similarity=0.225 Sum_probs=56.8
Q ss_pred EEecCCCcEEEEEEEcCC---CCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCc
Q 009054 415 VMGADFRGFIEIVFQNHE---NIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNV 491 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~---~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnp 491 (545)
-+.++.|+.|.+.+.|.+ +..|-|-|-++.. -..+.|+....+.|+++.|
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI---------------------------~~dv~PG~t~svtF~adkP 608 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV---------------------------NMEVAPQATASVTFTADKP 608 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccCc---------------------------cEEEcCCceEEEEEEcCCC
Confidence 477999999999999974 5677766643321 1356688999999999999
Q ss_pred cceeeeecchhh-hhcceEEEEEEeC
Q 009054 492 GMWNVRSEFWAR-QYLGQQFYLRVYS 516 (545)
Q Consensus 492 G~w~~HCHil~H-~d~GMm~~~~V~~ 516 (545)
|.|.+||...-| .|.+|...+.|++
T Consensus 609 Gvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 609 GVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred EEEEEECCcccccCcccceEEEEEEe
Confidence 999999987532 3458888887753
No 61
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=95.02 E-value=0.095 Score=48.44 Aligned_cols=88 Identities=17% Similarity=0.224 Sum_probs=61.4
Q ss_pred CeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEe-Cc----eeEEEeecCccce-----eeEEeEEEEccCce
Q 009054 193 DGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQ-GH----KMKLVEVEGTHTI-----QTTYSSLDVHVGQS 262 (545)
Q Consensus 193 ~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~-gh----~~~via~DG~~~~-----p~~~~~v~l~pgeR 262 (545)
+.+-+||......++.|.+|-++.++|+|.+...+ .|-+- .- ..-.++.||.-+. +.....--|.+||+
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~H-nl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s 152 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPH-NLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQS 152 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCe-eEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCce
Confidence 47889998876689999999999999999986544 55542 11 2245677776541 11112234669999
Q ss_pred EEEEEEeCCCCcceEEEEee
Q 009054 263 YSVLVTMDQPPQDFYIAVST 282 (545)
Q Consensus 263 ~dv~v~~~~~~g~y~~~~~~ 282 (545)
...++... ++|.||+.|.-
T Consensus 153 ~~~~~~~l-~aG~YwlvC~i 171 (196)
T PF06525_consen 153 ASGVYNDL-PAGYYWLVCGI 171 (196)
T ss_pred eeEEEccC-CCceEEEEccC
Confidence 99777544 68999999963
No 62
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=94.97 E-value=0.12 Score=41.25 Aligned_cols=71 Identities=8% Similarity=-0.004 Sum_probs=46.5
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.+.+..|++|.| .|.+...|-++++.-.+ +..+ + ..-.+.++.. ++++++.||.|
T Consensus 12 ~i~v~~GdtVt~--~N~d~~~Hnv~~~~g~~-------~~~~-------------~-~~~~~~~g~~--~~~tf~~~G~y 66 (83)
T TIGR02657 12 ELHVKVGDTVTW--INREAMPHNVHFVAGVL-------GEAA-------------L-KGPMMKKEQA--YSLTFTEAGTY 66 (83)
T ss_pred EEEECCCCEEEE--EECCCCCccEEecCCCC-------cccc-------------c-cccccCCCCE--EEEECCCCEEE
Confidence 467899999888 67777889888653211 0000 0 1122345664 44566889999
Q ss_pred eeeecchhhhhcceEEEEEE
Q 009054 495 NVRSEFWARQYLGQQFYLRV 514 (545)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V 514 (545)
.|||=+ |. .|-..+.|
T Consensus 67 ~y~C~~--Hp--~M~G~v~V 82 (83)
T TIGR02657 67 DYHCTP--HP--FMRGKVVV 82 (83)
T ss_pred EEEcCC--CC--CCeEEEEE
Confidence 999987 55 58777776
No 63
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=94.54 E-value=0.25 Score=42.17 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=30.2
Q ss_pred CCCEEEEEEEeCCccceeeeecchhhhhcceEEEEEEeCCC
Q 009054 478 PKSWTAIYVALDNVGMWNVRSEFWARQYLGQQFYLRVYSPV 518 (545)
Q Consensus 478 ~~~~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~ 518 (545)
+++. +.++++.||.|-|+|=. |...||-..+.|.++.
T Consensus 54 ~g~~--~~~tF~~~G~Y~Y~C~p--H~~~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 54 INEE--YTVTVTEEGVYGVKCTP--HYGMGMVALIQVGDPP 90 (116)
T ss_pred CCCE--EEEEeCCCEEEEEEcCC--CccCCCEEEEEECCCC
Confidence 4554 44556789999999994 9999999999998864
No 64
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=94.04 E-value=0.32 Score=50.15 Aligned_cols=76 Identities=13% Similarity=0.056 Sum_probs=52.8
Q ss_pred ccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCcc--CCcCCCCCeEEEEEEeCCcceeeeeecCchh
Q 009054 58 FPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGT--TCPIPPGKNFTYILQVKDQIGSYFYFPSVGF 135 (545)
Q Consensus 58 ~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~--q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~ 135 (545)
+--..+.|..|+ +.+.++|....++.+-. .+|+..+ ...|.||.+..+.+++ .+|+|-|+|-.+
T Consensus 41 c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~----------~~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C~~~- 106 (375)
T PRK10378 41 CEPMTLTVNAGK-TQFIIQNHSQKALEWEI----------LKGVMVVEERENIAPGFSQKMTANL--QPGEYDMTCGLL- 106 (375)
T ss_pred cccCceeeCCCC-EEEEEEeCCCCcceEEe----------eccccccccccccCCCCceEEEEec--CCceEEeecCcC-
Confidence 334579999996 88999999766543211 0222111 2479999999988776 599999999432
Q ss_pred hhhcCeeeEEEEeCC
Q 009054 136 QKAAGGFGGIRILSR 150 (545)
Q Consensus 136 ~~~~Gl~G~liV~~~ 150 (545)
..+.|.++|.+.
T Consensus 107 ---~~~~g~l~Vtg~ 118 (375)
T PRK10378 107 ---TNPKGKLIVKGE 118 (375)
T ss_pred ---CCCCceEEEeCC
Confidence 334889999874
No 65
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.53 E-value=0.41 Score=41.25 Aligned_cols=74 Identities=9% Similarity=0.046 Sum_probs=49.9
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCch-hhhh
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVG-FQKA 138 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~~~~ 138 (545)
.+.|.+..|++|++.+++. +--+++...++ +++.-+.||+.....|++ +++|+|++.|..- ....
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DViHsf~ip~~------------~~k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~gH 110 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVIHSFWIPEL------------GIKMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAGH 110 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS-EEEEETTC------------TEEEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTTG
T ss_pred cceecccccceEeEEEEcC-Ccccccccccc------------Ccccccccccceeeeeee-ccCCcEEEcCccccCcCc
Confidence 5789999999999999995 33333322222 113457899999999995 7899999999864 3333
Q ss_pred cCeeeEEEE
Q 009054 139 AGGFGGIRI 147 (545)
Q Consensus 139 ~Gl~G~liV 147 (545)
.-|.|-++|
T Consensus 111 ~~M~~~v~V 119 (120)
T PF00116_consen 111 SFMPGKVIV 119 (120)
T ss_dssp GG-EEEEEE
T ss_pred CCCeEEEEE
Confidence 346666655
No 66
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=93.39 E-value=0.71 Score=40.95 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=64.7
Q ss_pred cccCceEEEecCCEEEEEEEeCCCC--CceE---------eeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcce
Q 009054 57 QFPGPDIYSVTNDNLIINVHNSLPE--PFLI---------SWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIG 125 (545)
Q Consensus 57 ~~pgP~i~v~~Gd~v~v~~~N~l~~--~~~i---------H~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~G 125 (545)
.|++-.+.++.|++++..+.|.-.- ..++ -.|.... ..+++--.-...+.||++-...|.. .++|
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~---~Dme~d~~~~v~L~PG~s~elvv~f-t~~g 134 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILA---DDMEHDDPNTVTLAPGKSGELVVVF-TGAG 134 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhC---CccccCCcceeEeCCCCcEEEEEEe-cCCc
Confidence 3677889999999999999997521 1111 1133221 2333311113469999999999996 5799
Q ss_pred eeeeecCchhhhhcCeeeEEEEeC
Q 009054 126 SYFYFPSVGFQKAAGGFGGIRILS 149 (545)
Q Consensus 126 t~wYH~H~~~~~~~Gl~G~liV~~ 149 (545)
.|=+-|-...++..||.|-|.|.+
T Consensus 135 ~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 135 KYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred cEEEEecCCCcccCCcEEEEEeCC
Confidence 999999999999999999998864
No 67
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=92.66 E-value=0.65 Score=41.19 Aligned_cols=93 Identities=11% Similarity=0.046 Sum_probs=66.2
Q ss_pred EecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCcccee
Q 009054 416 MGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMWN 495 (545)
Q Consensus 416 ~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~ 495 (545)
+.++.|++++.++.|...-.|=|=+= ++....+ .+... ....-..---..++.+.||.+..+-+.+.++|.|-
T Consensus 65 ~~v~aG~tv~~v~~n~~el~hef~~~---~~~~~~~--~~~~~--~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye 137 (158)
T COG4454 65 FEVKAGETVRFVLKNEGELKHEFTMD---APDKNLE--HVTHM--ILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYE 137 (158)
T ss_pred ccccCCcEEeeeecCcccceEEEecc---Cccccch--hHHHh--hhCCccccCCcceeEeCCCCcEEEEEEecCCccEE
Confidence 56889999999999998777765444 2111111 01000 00000011234689999999999999999999999
Q ss_pred eeecchhhhhcceEEEEEEe
Q 009054 496 VRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 496 ~HCHil~H~d~GMm~~~~V~ 515 (545)
|-|-|-.|-+.||-.-++|.
T Consensus 138 ~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 138 FACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred EEecCCCcccCCcEEEEEeC
Confidence 99999999999999999884
No 68
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=92.21 E-value=0.7 Score=40.05 Aligned_cols=74 Identities=9% Similarity=-0.053 Sum_probs=49.3
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.+.++.|++|+| .|.+...|-.+.=+-. +|..-+++....+.....-| +-||.|
T Consensus 55 ~v~v~pGDTVtw--~~~d~~~Hnv~~~~~~----------------------~~~g~~~~~~~~~~s~~~Tf--e~~G~Y 108 (128)
T COG3794 55 EVTVKPGDTVTW--VNTDSVGHNVTAVGGM----------------------DPEGSGTLKAGINESFTHTF--ETPGEY 108 (128)
T ss_pred EEEECCCCEEEE--EECCCCCceEEEeCCC----------------------CcccccccccCCCcceEEEe--cccceE
Confidence 367899999999 6776667754432221 11122334444456555554 449999
Q ss_pred eeeecchhhhhcceEEEEEEeC
Q 009054 495 NVRSEFWARQYLGQQFYLRVYS 516 (545)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V~~ 516 (545)
.|.|=. |..+||-..+.|.+
T Consensus 109 ~Y~C~P--H~~~gM~G~IvV~~ 128 (128)
T COG3794 109 TYYCTP--HPGMGMKGKIVVGE 128 (128)
T ss_pred EEEecc--CCCCCcEEEEEeCC
Confidence 999988 99999999998853
No 69
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=92.19 E-value=0.87 Score=38.82 Aligned_cols=73 Identities=10% Similarity=-0.058 Sum_probs=46.7
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.+.++.|++|.|+.+ .+...|-.. +.+.+.|+. ......+++...+. ++.||.|
T Consensus 43 ~ltV~~GdTVtw~~~-~d~~~HnV~---------s~~~~~f~s--------------~~~~~~~G~t~s~T--f~~~G~Y 96 (115)
T TIGR03102 43 AIRVDPGTTVVWEWT-GEGGGHNVV---------SDGDGDLDE--------------SERVSEEGTTYEHT--FEEPGIY 96 (115)
T ss_pred EEEECCCCEEEEEEC-CCCCCEEEE---------ECCCCCccc--------------cccccCCCCEEEEE--ecCCcEE
Confidence 468999999999432 334555432 222222321 11223456655444 4789999
Q ss_pred eeeecchhhhhcceEEEEEEe
Q 009054 495 NVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V~ 515 (545)
-|+|=. |..+||-..+.|+
T Consensus 97 ~Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 97 LYVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred EEEccC--CCCCCCEEEEEEC
Confidence 999996 9999999999883
No 70
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=91.54 E-value=1.1 Score=38.47 Aligned_cols=85 Identities=16% Similarity=0.120 Sum_probs=53.1
Q ss_pred ceEEEec-CCEEEEEEEeCCCCCceEeeCCccCCC--------------CCCCCCCC----c-c--CCcCCCCCeEEEEE
Q 009054 61 PDIYSVT-NDNLIINVHNSLPEPFLISWNGVQQRR--------------NSYEDGVY----G-T--TCPIPPGKNFTYIL 118 (545)
Q Consensus 61 P~i~v~~-Gd~v~v~~~N~l~~~~~iH~HG~~~~~--------------~~~~DGv~----~-~--q~~i~pG~~~~y~~ 118 (545)
.+|.|+. |..|.|+|+|.-..+...-=|-+-..- ....|=+| . + ...|.|||+.+..|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 4699998 488999999984322111111100000 01112122 1 1 34589999999999
Q ss_pred EeCC-ccee-eeeecCchhhhhcCeeeEEE
Q 009054 119 QVKD-QIGS-YFYFPSVGFQKAAGGFGGIR 146 (545)
Q Consensus 119 ~~~~-~~Gt-~wYH~H~~~~~~~Gl~G~li 146 (545)
+++. ++|+ |-|-|-...+.. .|.|.|.
T Consensus 96 ~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred ECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 9753 5786 999999887775 5888775
No 71
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=90.52 E-value=0.91 Score=42.94 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=57.8
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccc
Q 009054 414 SVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGM 493 (545)
Q Consensus 414 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~ 493 (545)
+.+.++.|+.|++.+.+.+- .|. |+|-+-+. . ..+-||....+.|+++.||.
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV-~Hs-------f~ip~~~~-----------------k---~da~PG~~~~~~~~~~~~G~ 168 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDV-IHS-------FWVPELGG-----------------K---IDAIPGQYNALWFNADEPGV 168 (201)
T ss_pred CEEEEEcCCEEEEEEEeCch-hhc-------ccccccCc-----------------e---EEecCCcEEEEEEEeCCCEE
Confidence 45789999999999988653 344 44433321 1 33457888899999999999
Q ss_pred eeeeecchh-hhhcceEEEEEEeCCCc
Q 009054 494 WNVRSEFWA-RQYLGQQFYLRVYSPVE 519 (545)
Q Consensus 494 w~~HCHil~-H~d~GMm~~~~V~~~~~ 519 (545)
|...|--.- ..|..|...+.|+++++
T Consensus 169 y~~~c~e~cG~~h~~M~~~v~v~~~~~ 195 (201)
T TIGR02866 169 YYGYCAELCGAGHSLMLFKVVVVEREE 195 (201)
T ss_pred EEEEehhhCCcCccCCeEEEEEECHHH
Confidence 999998854 34688999999987753
No 72
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=89.55 E-value=3.5 Score=35.48 Aligned_cols=75 Identities=8% Similarity=0.034 Sum_probs=54.3
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCcc
Q 009054 413 TSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVG 492 (545)
Q Consensus 413 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG 492 (545)
.+.+.++.|+.|.+.+.+.+ ..|-|.+-....+ +.+.||....+.|+++.||
T Consensus 45 ~~~l~lp~g~~v~~~ltS~D-ViHsf~ip~~~~k---------------------------~d~~PG~~~~~~~~~~~~G 96 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSED-VIHSFWIPELGIK---------------------------MDAIPGRTNSVTFTPDKPG 96 (120)
T ss_dssp SSEEEEETTSEEEEEEEESS-S-EEEEETTCTEE---------------------------EEEBTTCEEEEEEEESSSE
T ss_pred cceecccccceEeEEEEcCC-ccccccccccCcc---------------------------cccccccceeeeeeeccCC
Confidence 34678999999999999864 6677776543321 3445788889999999999
Q ss_pred ceeeeecchh-hhhcceEEEEEEe
Q 009054 493 MWNVRSEFWA-RQYLGQQFYLRVY 515 (545)
Q Consensus 493 ~w~~HCHil~-H~d~GMm~~~~V~ 515 (545)
.|-..|..+= .-|..|...+.|+
T Consensus 97 ~y~~~C~e~CG~gH~~M~~~v~VV 120 (120)
T PF00116_consen 97 TYYGQCAEYCGAGHSFMPGKVIVV 120 (120)
T ss_dssp EEEEEE-SSSSTTGGG-EEEEEEE
T ss_pred cEEEcCccccCcCcCCCeEEEEEC
Confidence 9999998874 4556677777663
No 73
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=88.11 E-value=7.1 Score=36.85 Aligned_cols=77 Identities=12% Similarity=0.092 Sum_probs=56.3
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCch-hhhh
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVG-FQKA 138 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~~~~ 138 (545)
...|.+..|+.|++++++.. .+ ||..++. . +++.-+-||..-+..|+ ++++|+|...|..- ....
T Consensus 116 ~~~l~vp~g~~v~~~~ts~D----V~--Hsf~ip~---~----~~k~da~PG~~~~~~~~-~~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSKD----VI--HSFWVPE---L----GGKIDAIPGQYNALWFN-ADEPGVYYGYCAELCGAGH 181 (201)
T ss_pred cCEEEEEcCCEEEEEEEeCc----hh--hcccccc---c----CceEEecCCcEEEEEEE-eCCCEEEEEEehhhCCcCc
Confidence 35899999999999999852 22 6664421 1 11345778999999998 58899999999863 3334
Q ss_pred cCeeeEEEEeCC
Q 009054 139 AGGFGGIRILSR 150 (545)
Q Consensus 139 ~Gl~G~liV~~~ 150 (545)
..|.+-++|.++
T Consensus 182 ~~M~~~v~v~~~ 193 (201)
T TIGR02866 182 SLMLFKVVVVER 193 (201)
T ss_pred cCCeEEEEEECH
Confidence 668899998874
No 74
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=87.67 E-value=1.7 Score=42.34 Aligned_cols=82 Identities=11% Similarity=0.228 Sum_probs=58.8
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCcc
Q 009054 413 TSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVG 492 (545)
Q Consensus 413 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG 492 (545)
.+.+.++.|+.|++.+...+ ..| .|+|-+-+. -+.+-||-...+.+.++.||
T Consensus 136 ~n~l~lPv~~~V~f~ltS~D-ViH-------sF~IP~l~~--------------------k~d~iPG~~~~~~~~~~~~G 187 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSAD-VIH-------SFWIPQLGG--------------------KIDAIPGMTTELWLTANKPG 187 (247)
T ss_pred cceEEEeCCCeEEEEEEech-hce-------eEEecCCCc--------------------eeeecCCceEEEEEecCCCe
Confidence 35578999999999888774 444 455554432 13344677788999999999
Q ss_pred ceeeeecchh-hhhcceEEEEEEeCCCccccc
Q 009054 493 MWNVRSEFWA-RQYLGQQFYLRVYSPVESIRD 523 (545)
Q Consensus 493 ~w~~HCHil~-H~d~GMm~~~~V~~~~~~~~~ 523 (545)
.|-.+|+.+- .-|..|-+.+.|+.+++ +++
T Consensus 188 ~Y~g~Cae~CG~gH~~M~~~v~vvs~~~-f~~ 218 (247)
T COG1622 188 TYRGICAEYCGPGHSFMRFKVIVVSQED-FDA 218 (247)
T ss_pred EEEEEcHhhcCCCcccceEEEEEEcHHH-HHH
Confidence 9999999986 44556666777877765 433
No 75
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=84.81 E-value=13 Score=29.52 Aligned_cols=66 Identities=14% Similarity=0.305 Sum_probs=37.9
Q ss_pred EEEEEEEecCCCCeeeEEEe-Cce--eEEEeecCccce------e--eEEeEEEEccCceEEEEEEeCCC---CcceEEE
Q 009054 214 TYRFRISNVGLQHSLNFRIQ-GHK--MKLVEVEGTHTI------Q--TTYSSLDVHVGQSYSVLVTMDQP---PQDFYIA 279 (545)
Q Consensus 214 ~~rlRliNa~~~~~~~~~i~-gh~--~~via~DG~~~~------p--~~~~~v~l~pgeR~dv~v~~~~~---~g~y~~~ 279 (545)
...|++.|.+... ..|.+. |++ |.|...+|..+- . .......|.|||...+-.+.+.. ||.|.+.
T Consensus 3 ~~~l~v~N~s~~~-v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 3 EFTLTVTNNSDEP-VTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EEEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EEEEEEEeCCCCe-EEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEe
Confidence 3578888888844 466664 554 444445666652 1 34678999999999999988863 7999876
Q ss_pred E
Q 009054 280 V 280 (545)
Q Consensus 280 ~ 280 (545)
+
T Consensus 82 a 82 (82)
T PF12690_consen 82 A 82 (82)
T ss_dssp E
T ss_pred C
Confidence 4
No 76
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=81.30 E-value=10 Score=32.58 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=51.9
Q ss_pred CceEEEeC-CcEEEEEEEecCCCC----eeeEEEe-CceeEEEee-------cCcccee----eEEeEEEEccCceEEEE
Q 009054 204 GASFTVEQ-GKTYRFRISNVGLQH----SLNFRIQ-GHKMKLVEV-------EGTHTIQ----TTYSSLDVHVGQSYSVL 266 (545)
Q Consensus 204 ~~~~~v~~-G~~~rlRliNa~~~~----~~~~~i~-gh~~~via~-------DG~~~~p----~~~~~v~l~pgeR~dv~ 266 (545)
...|+|++ ++.+.+.|-|.|... .|++-|- .-.+.-|+. |-+++++ +-..+=.|++||..+|-
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 46789998 488999999998643 2344342 223333333 3444543 23456689999999999
Q ss_pred EEeCC-CCc-ceEEEEe
Q 009054 267 VTMDQ-PPQ-DFYIAVS 281 (545)
Q Consensus 267 v~~~~-~~g-~y~~~~~ 281 (545)
++++. .+| +|.+.|+
T Consensus 95 F~~~~l~~g~~Y~f~CS 111 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCS 111 (125)
T ss_pred EECCCCCCCCcceEEEc
Confidence 99874 456 6999987
No 77
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=81.12 E-value=2.3 Score=44.19 Aligned_cols=79 Identities=15% Similarity=0.136 Sum_probs=52.2
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCch-hhhhc
Q 009054 61 PDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVG-FQKAA 139 (545)
Q Consensus 61 P~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~~~~~ 139 (545)
-++.|++||.|.+.++|-..-+--+ ||.-.. .-|+ ...+.|-++-.|.|. ++.+|.+||.|-.. .-+..
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~t--hgfv~p----~~~v---~~~v~pq~tasvtf~-a~kpgv~w~ycs~fchalh~ 627 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLT--HGFVIP----NYGV---NMEVKPQRTASVTFY-ADKPGVAWYYCSWFCHALHM 627 (637)
T ss_pred EEEEEecCcEEEEEecccceecccc--ceeeec----cCce---EEEEccCCceEEEEE-ccCCeeeehhhhhHHHHHHH
Confidence 3578888888888888875433333 343221 1122 235788899999999 47899999998654 33344
Q ss_pred CeeeEEEEeC
Q 009054 140 GGFGGIRILS 149 (545)
Q Consensus 140 Gl~G~liV~~ 149 (545)
-|+|-++|+.
T Consensus 628 em~~rmlve~ 637 (637)
T COG4263 628 EMAGRMLVEA 637 (637)
T ss_pred hhccceeecC
Confidence 4778888863
No 78
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=78.81 E-value=4.2 Score=39.14 Aligned_cols=77 Identities=9% Similarity=0.141 Sum_probs=57.3
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
-+.++.|+.|++.+...+-. |+|+|-+-+. .+|.+ ||....+.|++|.||.|
T Consensus 140 el~lP~g~pV~~~ltS~DVi--------HSF~VP~l~~-----------------K~Dai---PG~~n~~~~~~~~~G~y 191 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNSVM--------NSFFIPQLGS-----------------QIYAM---AGMQTKLHLIANEPGVY 191 (226)
T ss_pred eEEEECCCEEEEEEEECchh--------hhhhhhhcCC-----------------eeecC---CCceEEEEEEeCCCEEE
Confidence 46789999999999877644 4566665432 24554 67778899999999999
Q ss_pred eeeecchhh-hhcceEEEEEEeCCCc
Q 009054 495 NVRSEFWAR-QYLGQQFYLRVYSPVE 519 (545)
Q Consensus 495 ~~HCHil~H-~d~GMm~~~~V~~~~~ 519 (545)
.-.|--+-- .|..|.+.+.|+.+++
T Consensus 192 ~g~CaE~CG~~Ha~M~~~V~v~~~~~ 217 (226)
T TIGR01433 192 DGISANYSGPGFSGMKFKAIATDRAA 217 (226)
T ss_pred EEEchhhcCcCccCCeEEEEEECHHH
Confidence 999977643 3677888888887653
No 79
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=78.33 E-value=13 Score=36.18 Aligned_cols=78 Identities=9% Similarity=-0.039 Sum_probs=58.0
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCch-hhhh
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVG-FQKA 138 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~~~~ 138 (545)
...|.+..|.+|++.++-. +-- ||+.++.- +.+.-.-||...++.++ ++++|+|.-+|+.- ...-
T Consensus 136 ~n~l~lPv~~~V~f~ltS~-DVi-----HsF~IP~l-------~~k~d~iPG~~~~~~~~-~~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSA-DVI-----HSFWIPQL-------GGKIDAIPGMTTELWLT-ANKPGTYRGICAEYCGPGH 201 (247)
T ss_pred cceEEEeCCCeEEEEEEec-hhc-----eeEEecCC-------CceeeecCCceEEEEEe-cCCCeEEEEEcHhhcCCCc
Confidence 3889999999999988766 222 34433211 11445788988999998 58899999999965 6666
Q ss_pred cCeeeEEEEeCCC
Q 009054 139 AGGFGGIRILSRP 151 (545)
Q Consensus 139 ~Gl~G~liV~~~~ 151 (545)
..|.|.++|.+++
T Consensus 202 ~~M~~~v~vvs~~ 214 (247)
T COG1622 202 SFMRFKVIVVSQE 214 (247)
T ss_pred ccceEEEEEEcHH
Confidence 7799999999854
No 80
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=76.64 E-value=2.7 Score=35.43 Aligned_cols=66 Identities=17% Similarity=0.272 Sum_probs=40.9
Q ss_pred EEEEeCCCCCc---eEeeCCccCCC---CCCCCCCCccCCcCCCCCeEEEEEEe--CCcceeeeeecCchhhhhcCeeeE
Q 009054 73 INVHNSLPEPF---LISWNGVQQRR---NSYEDGVYGTTCPIPPGKNFTYILQV--KDQIGSYFYFPSVGFQKAAGGFGG 144 (545)
Q Consensus 73 v~~~N~l~~~~---~iH~HG~~~~~---~~~~DGv~~~q~~i~pG~~~~y~~~~--~~~~Gt~wYH~H~~~~~~~Gl~G~ 144 (545)
|++.|....+. +=|||=....+ .-.-.||-|-|.-|+||++|+|.=-. ..+.|+ |.|-
T Consensus 34 itI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y~YtSg~~l~Tp~G~--------------M~Gh 99 (126)
T COG2967 34 VTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEYQYTSGCPLDTPSGT--------------MQGH 99 (126)
T ss_pred EEEecCCCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCceEEcCCcCccCCcce--------------EEEE
Confidence 67777775554 56898321111 12345555558889999999997432 245666 7777
Q ss_pred EEEeCCCC
Q 009054 145 IRILSRPL 152 (545)
Q Consensus 145 liV~~~~~ 152 (545)
+...+.++
T Consensus 100 Y~M~~e~G 107 (126)
T COG2967 100 YEMIDEDG 107 (126)
T ss_pred EEEecCCC
Confidence 76666443
No 81
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=74.35 E-value=8.6 Score=32.29 Aligned_cols=69 Identities=10% Similarity=0.257 Sum_probs=45.1
Q ss_pred EEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeC
Q 009054 72 IINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILS 149 (545)
Q Consensus 72 ~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~ 149 (545)
.|.++|+|.....|..|=- +..-| .|. ..+.||+++.++|.. +-.|+--|.|+... ....-..-+.|..
T Consensus 2 ~V~I~N~L~~~~~L~vhC~----S~d~D--lg~-~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~-~~~~~~~~f~vy~ 70 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCK----SKDDD--LGW-HVLKPGQSYSFSFRD-NFFGTTLFWCHFRW-PGGKYHHSFDVYR 70 (110)
T ss_pred EEEEEECCCCCCeEEEEee----CCCcc--CCC-EECCCCCEEEEEEec-CcCCceeEEEEEEE-CCccEEEEEEEEe
Confidence 4889999977766776643 22222 222 368999999999984 44677778899866 2211356666654
No 82
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=70.71 E-value=13 Score=35.78 Aligned_cols=79 Identities=4% Similarity=0.033 Sum_probs=57.2
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCcc
Q 009054 413 TSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVG 492 (545)
Q Consensus 413 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG 492 (545)
.+.+.++.|+.|++.+.+.+ ..| +|+|-+-+. . ...-||....+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D-ViH-------sf~ip~~~~-----------------k---~d~~Pg~~~~~~~~~~~~g 190 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD-VIH-------SWTVPSLGV-----------------K---VDAIPGRLNQLSFEPKRPG 190 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc-ccc-------ceeccccCc-----------------e---eECCCCcceeEEEEeCCCE
Confidence 45578999999999999875 344 455544321 1 3334677788899999999
Q ss_pred ceeeeecchhhh-hcceEEEEEEeCCCc
Q 009054 493 MWNVRSEFWARQ-YLGQQFYLRVYSPVE 519 (545)
Q Consensus 493 ~w~~HCHil~H~-d~GMm~~~~V~~~~~ 519 (545)
.+...|.-+-.. |..|-..++|+.+++
T Consensus 191 ~y~~~C~e~CG~~H~~M~~~v~v~~~~~ 218 (228)
T MTH00140 191 VFYGQCSEICGANHSFMPIVVEAVPLED 218 (228)
T ss_pred EEEEECccccCcCcCCCeEEEEEECHHH
Confidence 999999987644 667777888877653
No 83
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=69.41 E-value=35 Score=31.37 Aligned_cols=95 Identities=8% Similarity=-0.059 Sum_probs=56.6
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccC-cCCCCC---CCCCCC--CCCCccceEEeCCCCEEEEEEE
Q 009054 414 SVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGG-VWTPAS---RNEYNL--RDAVSRCTTQVYPKSWTAIYVA 487 (545)
Q Consensus 414 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g-~~~~~~---~~~~~~--~~p~~rDTv~vp~~~~v~irf~ 487 (545)
..+-++.|-.|.+++.|.....|- +-|+..+.. +..+.. .+.+++ ..+.--..=-+..|.....-+.
T Consensus 85 mtIyiPaGw~V~V~f~N~e~~pHn-------l~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~ 157 (195)
T TIGR03094 85 MTIYLPAGWNVYVTFTNYESLPHN-------LKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWN 157 (195)
T ss_pred eEEEEeCCCEEEEEEEcCCCCCcc-------EEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEec
Confidence 346789999999999999877754 455544321 111100 000000 0000001111223455555555
Q ss_pred eCCccceeeeecchhhhhcceEEEEEEe
Q 009054 488 LDNVGMWNVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 488 adnpG~w~~HCHil~H~d~GMm~~~~V~ 515 (545)
.--||.|.+=|=+.-|...||-..+.|-
T Consensus 158 ~~~~G~YwlvCgipGHAesGMw~~lIVS 185 (195)
T TIGR03094 158 DTSAGKYWLVCGITGHAESGMWAVVIVS 185 (195)
T ss_pred cCCCeeEEEEcccCChhhcCcEEEEEEe
Confidence 5679999999999999999999888774
No 84
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=66.32 E-value=12 Score=35.90 Aligned_cols=77 Identities=16% Similarity=0.306 Sum_probs=57.2
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
-+.++.|+.|++.+...+-. |+|+|=+-+. .+|.+ ||....+.|+++.||.|
T Consensus 131 ~l~iP~g~~v~~~ltS~DVi--------Hsf~vP~l~~-----------------k~dai---PG~~~~~~~~~~~~G~y 182 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSADTM--------TSFWIPQLGG-----------------QKYAM---TGMTMNWYLQADQVGTY 182 (217)
T ss_pred cEEEECCCEEEEEEECCchh--------hhhhchhhCc-----------------eeecC---CCceEEEEEEeCCCEEE
Confidence 36789999999999877643 4566654431 34555 68888999999999999
Q ss_pred eeeecchh-hhhcceEEEEEEeCCCc
Q 009054 495 NVRSEFWA-RQYLGQQFYLRVYSPVE 519 (545)
Q Consensus 495 ~~HCHil~-H~d~GMm~~~~V~~~~~ 519 (545)
--.|=-+- -.|.-|.+.++|+.+++
T Consensus 183 ~g~Cae~CG~~Hs~M~~~v~v~~~~~ 208 (217)
T TIGR01432 183 RGRNANFNGEGFADQTFDVNAVSEKD 208 (217)
T ss_pred EEEehhhcCccccCCeEEEEEeCHHH
Confidence 99996653 34667888888887764
No 85
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=66.14 E-value=31 Score=32.32 Aligned_cols=77 Identities=8% Similarity=0.071 Sum_probs=55.0
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccc
Q 009054 414 SVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGM 493 (545)
Q Consensus 414 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~ 493 (545)
+.+.++.|+.+++.+...+ ..|.|.+ -+-+. .+|. -||....+.|.++.||.
T Consensus 116 ~~l~lp~g~~v~~~ltS~D-ViHsf~v-------p~l~~-----------------k~d~---~PG~~~~~~~~~~~~G~ 167 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSSD-VIHSFSV-------PDLNL-----------------KMDA---IPGRINHLFFCPDRHGV 167 (194)
T ss_pred ceEEEeCCCEEEeeeecCc-cccceec-------cccCc-----------------eeec---CCCceEEEEEEcCCCEE
Confidence 3467899999999887664 4455444 33221 1233 36888899999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEeCCC
Q 009054 494 WNVRSEFWARQ-YLGQQFYLRVYSPV 518 (545)
Q Consensus 494 w~~HCHil~H~-d~GMm~~~~V~~~~ 518 (545)
|-.-|.-+--. |..|-..++|++++
T Consensus 168 y~g~C~e~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 168 FVGYCSELCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEEeehhhCcCcccCcEEEEEEcCC
Confidence 99999987543 66777888887764
No 86
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=65.34 E-value=41 Score=26.68 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=29.9
Q ss_pred eEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCcc----CCcCCCCCeEEEEEEeCCc---ceeeee
Q 009054 62 DIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGT----TCPIPPGKNFTYILQVKDQ---IGSYFY 129 (545)
Q Consensus 62 ~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~----q~~i~pG~~~~y~~~~~~~---~Gt~wY 129 (545)
+|+..-|++..+.|.|.-.+.. =-|++|.+.. +..|+|||+.+|++..+.. +|+|..
T Consensus 17 ~l~f~sgq~~D~~v~d~~g~~v-----------wrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKEGKEV-----------WRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEESSS--EEEEEE-TT--EE-----------EETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEeCCCCEEEEEEECCCCCEE-----------EEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 4566666666666665532211 1367776554 3459999999999998643 688853
No 87
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=64.25 E-value=98 Score=31.75 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=14.6
Q ss_pred CCcCCCCCeEEEEEEe
Q 009054 105 TCPIPPGKNFTYILQV 120 (545)
Q Consensus 105 q~~i~pG~~~~y~~~~ 120 (545)
+.||.|||+.+.+..+
T Consensus 337 ~~pI~PGETr~v~v~a 352 (399)
T TIGR03079 337 QSAIAPGETVEVKMEA 352 (399)
T ss_pred CCCcCCCcceEEEEEE
Confidence 6789999999999986
No 88
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=64.08 E-value=25 Score=31.78 Aligned_cols=78 Identities=12% Similarity=0.134 Sum_probs=53.0
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccc
Q 009054 414 SVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGM 493 (545)
Q Consensus 414 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~ 493 (545)
+.+.++.|..+++.+...+ ..|.|.+ -+-+. ..|.+ ||....+.|.++.||.
T Consensus 73 n~LvLP~g~~Vr~~lTS~D-VIHSF~V-------P~lgv-----------------K~Dav---PGr~n~l~~~~~~~G~ 124 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITATD-VIHSWSV-------PSLGI-----------------KADAI---PGRLHKINTFILREGV 124 (162)
T ss_pred CCEEEeCCCEEEEEEEeCc-cceeeec-------cccCc-----------------eeecc---CCceEEEEEecCCCeE
Confidence 3467899999999887665 4465544 33321 12333 5677788899999999
Q ss_pred eeeeecchh-hhhcceEEEEEEeCCCc
Q 009054 494 WNVRSEFWA-RQYLGQQFYLRVYSPVE 519 (545)
Q Consensus 494 w~~HCHil~-H~d~GMm~~~~V~~~~~ 519 (545)
|...|.-+- --|..|-..++|+.+++
T Consensus 125 y~gqCsElCG~gHs~M~~~V~vvs~~~ 151 (162)
T PTZ00047 125 FYGQCSEMCGTLHGFMPIVVEAVSPEA 151 (162)
T ss_pred EEEEcchhcCcCccCceEEEEEeCHHH
Confidence 999999874 33455667777776653
No 89
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=63.89 E-value=90 Score=26.38 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=11.3
Q ss_pred EEEEEecCCC-CeeeEEEeCc
Q 009054 216 RFRISNVGLQ-HSLNFRIQGH 235 (545)
Q Consensus 216 rlRliNa~~~-~~~~~~i~gh 235 (545)
++|++|++.. ..+.+.++|.
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~ 23 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGT 23 (122)
T ss_pred EEEEEEcCCCCccEEEEECCE
Confidence 5677777664 3455555443
No 90
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=59.80 E-value=88 Score=24.94 Aligned_cols=66 Identities=20% Similarity=0.340 Sum_probs=40.9
Q ss_pred EEeCCcEE--EEEEEecCCCCeeeEEEeCceeEEEeecCccceeeEEeEE-EEccCceEEEEEEeCC-CCcceEEEEee
Q 009054 208 TVEQGKTY--RFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTTYSSL-DVHVGQSYSVLVTMDQ-PPQDFYIAVST 282 (545)
Q Consensus 208 ~v~~G~~~--rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v-~l~pgeR~dv~v~~~~-~~g~y~~~~~~ 282 (545)
.+.+|+.+ .+.+-|.|....-.+.+. +-.||..+ ....| .|.||+...+-+.... .+|.|.+++..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEE
Confidence 45677776 577899988664444443 33466544 34455 7899999888887753 57888888763
No 91
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=56.49 E-value=33 Score=33.32 Aligned_cols=79 Identities=9% Similarity=0.045 Sum_probs=56.0
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCcc
Q 009054 413 TSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVG 492 (545)
Q Consensus 413 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG 492 (545)
.+.+.++.|+.+++.+...+ ..|. |+|-+-+. .+|.+ ||..-.+.|.++.||
T Consensus 150 ~n~lvlP~~~~v~~~~tS~D-ViHs-------f~iP~lgv-----------------K~Dai---PG~~n~~~~~~~~~G 201 (240)
T MTH00023 150 DNRLVVPINTHVRILVTGAD-VLHS-------FAVPSLGL-----------------KIDAV---PGRLNQTGFFIKRPG 201 (240)
T ss_pred CceEEEecCCEEEEEEEcCC-cccc-------eeecccCc-----------------eeecC---CCcceeEEEEcCCCE
Confidence 35578999999999887765 4454 44444331 23433 566678889999999
Q ss_pred ceeeeecchhhh-hcceEEEEEEeCCCc
Q 009054 493 MWNVRSEFWARQ-YLGQQFYLRVYSPVE 519 (545)
Q Consensus 493 ~w~~HCHil~H~-d~GMm~~~~V~~~~~ 519 (545)
.+.-.|.-+-.. |.-|-..++|+++++
T Consensus 202 ~y~g~C~e~CG~~Hs~M~~~v~vv~~~~ 229 (240)
T MTH00023 202 VFYGQCSEICGANHSFMPIVIEAVSLDK 229 (240)
T ss_pred EEEEEchhhcCcCccCCeEEEEEECHHH
Confidence 999999887544 667777888887653
No 92
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=56.48 E-value=40 Score=27.39 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=40.0
Q ss_pred EeCCcEEEEEEE--ecCCCCeeeEEEeCceeEEEeecCccceeeEEeEE-EEccCceEEEEEEeCCC--CcceEEEEee
Q 009054 209 VEQGKTYRFRIS--NVGLQHSLNFRIQGHKMKLVEVEGTHTIQTTYSSL-DVHVGQSYSVLVTMDQP--PQDFYIAVST 282 (545)
Q Consensus 209 v~~G~~~rlRli--Na~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v-~l~pgeR~dv~v~~~~~--~g~y~~~~~~ 282 (545)
-+|||++.+|.+ +... ......-....++|..-+|..+. ...+ .......++.-+.++.. .|.|.+++..
T Consensus 11 YrPGetV~~~~~~~~~~~-~~~~~~~~~~~v~i~dp~g~~v~---~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-DFKPPANSPVTVTIKDPSGNEVF---RWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-TCSCESSEEEEEEEEETTSEEEE---EEEEEETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred cCCCCEEEEEEEEecccc-ccccccCCceEEEEECCCCCEEE---EEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 689999999998 6662 11111111223556666665442 1222 34567788888888763 5999999875
No 93
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=53.61 E-value=14 Score=32.00 Aligned_cols=43 Identities=30% Similarity=0.516 Sum_probs=25.1
Q ss_pred EEEEeCCCCCc---eEeeC-----CccCCCCCCCCCCCccCCcCCCCCeEEEE
Q 009054 73 INVHNSLPEPF---LISWN-----GVQQRRNSYEDGVYGTTCPIPPGKNFTYI 117 (545)
Q Consensus 73 v~~~N~l~~~~---~iH~H-----G~~~~~~~~~DGv~~~q~~i~pG~~~~y~ 117 (545)
|++.|..+++. +=||- |-.+ .-..+||-|-|..|.||++|.|.
T Consensus 35 ItI~N~~~~~vQL~~R~W~I~d~~g~~~--~V~G~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 35 ITIENLGRVPVQLLSRHWLITDANGRVQ--EVRGEGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred EEEEECCCCCEEEEeeeEEEEECCCCEE--EEECCceecCCceECCCCCeEEe
Confidence 66677665543 33553 2111 11245555557779999988775
No 94
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=53.35 E-value=88 Score=24.18 Aligned_cols=65 Identities=20% Similarity=0.348 Sum_probs=31.4
Q ss_pred EeCCcEE--EEEEEecCCCCe--eeEEEeCceeEEEeecCcc--ceeeEEeEEEEccCceEEEEEEeC--C--CCcceEE
Q 009054 209 VEQGKTY--RFRISNVGLQHS--LNFRIQGHKMKLVEVEGTH--TIQTTYSSLDVHVGQSYSVLVTMD--Q--PPQDFYI 278 (545)
Q Consensus 209 v~~G~~~--rlRliNa~~~~~--~~~~i~gh~~~via~DG~~--~~p~~~~~v~l~pgeR~dv~v~~~--~--~~g~y~~ 278 (545)
|.+|+.. .+.+-|.+.... ..+++.. -+|=. ..|..+. .|.||+...+-++.. . .+|+|.+
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-------P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSL-------PEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeC-------CCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 4567665 677889886442 3343332 23322 1233333 789997776666543 2 4799998
Q ss_pred EEee
Q 009054 279 AVST 282 (545)
Q Consensus 279 ~~~~ 282 (545)
....
T Consensus 72 ~~~a 75 (78)
T PF10633_consen 72 TVTA 75 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8753
No 95
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=52.96 E-value=56 Score=33.95 Aligned_cols=86 Identities=16% Similarity=0.281 Sum_probs=56.4
Q ss_pred eEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceEEEEEEeCCCC
Q 009054 194 GILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQPP 273 (545)
Q Consensus 194 ~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~ 273 (545)
.++|+........++|++|+ ++|.+.|.+.... . |.++ +|+.+ .-..=.|+||.+..+.+++ .|
T Consensus 33 ~Vti~d~~c~p~~~tVpAG~-~~f~V~N~~~~~~-E-------fe~~--~~~~v---v~e~EnIaPG~s~~l~~~L--~p 96 (375)
T PRK10378 33 KVTVNDKQCEPMTLTVNAGK-TQFIIQNHSQKAL-E-------WEIL--KGVMV---VEERENIAPGFSQKMTANL--QP 96 (375)
T ss_pred EEEEECCccccCceeeCCCC-EEEEEEeCCCCcc-e-------EEee--ccccc---cccccccCCCCceEEEEec--CC
Confidence 46777766656889999996 8899999987542 2 3333 22211 0112389999988888777 48
Q ss_pred cceEEEEeecccCCccceEEEEEecCC
Q 009054 274 QDFYIAVSTRFTNKVLTSTGTLHYSNS 300 (545)
Q Consensus 274 g~y~~~~~~~~~~~~~~~~ail~y~~~ 300 (545)
|+|.+.|... + ...+.+.+.|.
T Consensus 97 GtY~~~C~~~--~---~~~g~l~Vtg~ 118 (375)
T PRK10378 97 GEYDMTCGLL--T---NPKGKLIVKGE 118 (375)
T ss_pred ceEEeecCcC--C---CCCceEEEeCC
Confidence 9999999532 1 12455666554
No 96
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=52.13 E-value=66 Score=24.24 Aligned_cols=65 Identities=26% Similarity=0.269 Sum_probs=34.5
Q ss_pred ceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceEEEEEEeCCCCcceEEEEe
Q 009054 205 ASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQPPQDFYIAVS 281 (545)
Q Consensus 205 ~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~ 281 (545)
-.++++.|+++++.+-+.+. +..+.+...+|..+....-.. -..+..--+.+... ++|+|.+++.
T Consensus 5 y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAGTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSEEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCEEEEEEEE
Confidence 35788999998888766554 222455555554332111111 00112222334445 6899998864
No 97
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=51.63 E-value=51 Score=31.74 Aligned_cols=78 Identities=6% Similarity=-0.011 Sum_probs=56.4
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCcc
Q 009054 413 TSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVG 492 (545)
Q Consensus 413 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG 492 (545)
.+.+.++.|+.+++.+...+-. |.|+|-+-|. ..|.+ ||....+.|.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DVi--------Hsf~ip~lg~-----------------k~dai---PG~~~~~~~~~~~~G 190 (227)
T MTH00098 139 DNRVVLPMEMPIRMLISSEDVL--------HSWAVPSLGL-----------------KTDAI---PGRLNQTTLMSTRPG 190 (227)
T ss_pred cceEEecCCCEEEEEEEECccc--------cccccccccc-----------------ceecC---CCceEEEEEecCCcE
Confidence 3557799999999998877643 4566655432 22333 677788899999999
Q ss_pred ceeeeecchhhh-hcceEEEEEEeCCC
Q 009054 493 MWNVRSEFWARQ-YLGQQFYLRVYSPV 518 (545)
Q Consensus 493 ~w~~HCHil~H~-d~GMm~~~~V~~~~ 518 (545)
.+..-|.-+-.. |.-|-..++|+.++
T Consensus 191 ~~~g~Cse~CG~~H~~M~~~v~v~~~~ 217 (227)
T MTH00098 191 LYYGQCSEICGSNHSFMPIVLELVPLK 217 (227)
T ss_pred EEEEECccccCcCcCCceEEEEEeCHH
Confidence 999999886544 56777788887665
No 98
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=50.16 E-value=73 Score=32.72 Aligned_cols=138 Identities=17% Similarity=0.175 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHHHHHHHHHhhhcCCCe----EEEEEE-EEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEe
Q 009054 3 PKSALIWQLCVVYFLAMFAIVARAESPY----RFFTWN-VTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHN 77 (545)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~-~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N 77 (545)
+|-+....++.+++.......+.+.-+. ..-.+. +..-...+.-++..+..-+=++||-+++++ ++++|
T Consensus 200 rkv~~~~~~~tl~lV~~g~~~t~~~yP~tIPlQag~~~~i~pl~~~~~~V~~~v~~A~Y~vpgR~l~~~------l~VtN 273 (381)
T PF04744_consen 200 RKVGIAFLAGTLVLVIGGYAYTNSKYPITIPLQAGLLRPIKPLPVPPNSVKVKVTDATYRVPGRTLTMT------LTVTN 273 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHSSSS------S-BS------SS-SSEEEEEEEEEEESSSSEEEEE------EEEEE
T ss_pred ceeehhHHHHHHHHHhhhHhhhhhcCCCccccccccccCcccCCCCCCceEEEEeccEEecCCcEEEEE------EEEEc
Q ss_pred CCCCCc---eEeeCCccCCCCC-------------CCCCCCcc-CCcCCCCCeEEEEEEeCC------------------
Q 009054 78 SLPEPF---LISWNGVQQRRNS-------------YEDGVYGT-TCPIPPGKNFTYILQVKD------------------ 122 (545)
Q Consensus 78 ~l~~~~---~iH~HG~~~~~~~-------------~~DGv~~~-q~~i~pG~~~~y~~~~~~------------------ 122 (545)
+.+++. -.-.-|++...+. ..+|.-.. ..||+|||+.+.+..+.+
T Consensus 274 ~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~PGETrtl~V~a~dA~WeveRL~~l~~D~dsr 353 (381)
T PF04744_consen 274 NGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIAPGETRTLTVEAQDAAWEVERLSDLIYDPDSR 353 (381)
T ss_dssp ESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-TT-EEEEEEEEE-HHHHHTTGGGGGGSSS-E
T ss_pred CCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcCCCceEEEEEEeehhHHHHhhhhhhhcCcccc
Q ss_pred cceeeeeecCchhhhhcCeeeEEE
Q 009054 123 QIGSYFYFPSVGFQKAAGGFGGIR 146 (545)
Q Consensus 123 ~~Gt~wYH~H~~~~~~~Gl~G~li 146 (545)
-.|.+++.+-.+..+-.-+.|++|
T Consensus 354 fgGLLff~d~~G~r~i~~I~gpvI 377 (381)
T PF04744_consen 354 FGGLLFFFDASGNRYISEIAGPVI 377 (381)
T ss_dssp EEEEEEEEETTS-EEEEEEEEE-E
T ss_pred eeEEEEEEcCCCCEEEEeccCccc
No 99
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=50.04 E-value=2.4e+02 Score=26.99 Aligned_cols=89 Identities=15% Similarity=0.210 Sum_probs=62.4
Q ss_pred cCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCC-----ceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEE
Q 009054 43 YPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEP-----FLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYI 117 (545)
Q Consensus 43 ~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~-----~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~ 117 (545)
+++|.+---+++.|.+---.|.|..|..+++++.=+.+.+ .+-.||+. ...+-++...-+
T Consensus 79 a~~g~qeIsitv~gGy~p~~IvV~~~v~~rl~f~Rkdpspcle~i~~pdfgia---------------anlpl~q~ssIe 143 (272)
T COG4633 79 APNGIQEISITVDGGYIPSRIVVVDGVPVRLTFKRKDPSPCLESIMSPDFGIA---------------ANLPLNQVSSIE 143 (272)
T ss_pred ccCCceEEEEEEeCCccceeEEEecCcceEeeeccCCCCcchhhccccccccc---------------ccCCcCceeEEE
Confidence 3444444445555555556799999999999998886432 33444443 346778999999
Q ss_pred EEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCC
Q 009054 118 LQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPL 152 (545)
Q Consensus 118 ~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~ 152 (545)
|+ +.+.|.|-+-|... -|.|.++|+.-.+
T Consensus 144 ~T-~~s~ge~af~cgmn-----m~~G~~~vet~~~ 172 (272)
T COG4633 144 FT-PISKGEYAFLCGMN-----MFRGNIQVETLTG 172 (272)
T ss_pred ec-cccccchhhhcchh-----hccCeeEEEecCC
Confidence 99 78899998888753 2778999998543
No 100
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=49.74 E-value=49 Score=31.95 Aligned_cols=79 Identities=6% Similarity=-0.017 Sum_probs=58.2
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCcc
Q 009054 413 TSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVG 492 (545)
Q Consensus 413 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG 492 (545)
.+.+.++.|+.+++.+...+-. |+|+|-+-|. ..|.+ ||....+.|.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DVi--------Hsf~ip~~~~-----------------k~da~---PG~~~~~~~~~~~~G 190 (230)
T MTH00129 139 DHRMVVPVESPIRVLVSAEDVL--------HSWAVPALGV-----------------KMDAV---PGRLNQTAFIASRPG 190 (230)
T ss_pred cceEEEecCcEEEEEEEeCccc--------cceeccccCC-----------------ccccC---CCceEEEEEEeCCce
Confidence 3457789999999999877643 5677766542 12333 677788899999999
Q ss_pred ceeeeecchhh-hhcceEEEEEEeCCCc
Q 009054 493 MWNVRSEFWAR-QYLGQQFYLRVYSPVE 519 (545)
Q Consensus 493 ~w~~HCHil~H-~d~GMm~~~~V~~~~~ 519 (545)
.+-..|.-+-. .|..|-..++|+.+++
T Consensus 191 ~~~g~C~e~CG~~H~~M~~~v~vv~~~~ 218 (230)
T MTH00129 191 VFYGQCSEICGANHSFMPIVVEAVPLEH 218 (230)
T ss_pred EEEEEChhhccccccCCcEEEEEECHHH
Confidence 99999988643 4677878888876653
No 101
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=46.99 E-value=58 Score=31.31 Aligned_cols=79 Identities=8% Similarity=0.084 Sum_probs=56.3
Q ss_pred cceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCc
Q 009054 412 DTSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNV 491 (545)
Q Consensus 412 ~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnp 491 (545)
..+.+.++.|+.+++.+...+ ..| +|+|-+-+. .+|.+ ||..-.+.|.++.|
T Consensus 138 ~~n~l~lP~~~~v~~~~tS~D-ViH-------sf~vP~l~~-----------------K~Dai---PG~~n~~~~~~~~~ 189 (226)
T MTH00139 138 VDNRLVLPYKSNIRALITAAD-VLH-------SWTVPSLGV-----------------KIDAV---PGRLNQVGFFINRP 189 (226)
T ss_pred cCceEEEecCCEEEEEEecCc-ccc-------ceeccccCc-----------------cccCC---CCcEEEEEEEcCCC
Confidence 345578999999999887765 444 555554432 34555 57777889999999
Q ss_pred cceeeeecchhh-hhcceEEEEEEeCCC
Q 009054 492 GMWNVRSEFWAR-QYLGQQFYLRVYSPV 518 (545)
Q Consensus 492 G~w~~HCHil~H-~d~GMm~~~~V~~~~ 518 (545)
|.+.--|=-+-- -|.-|-..++|++++
T Consensus 190 G~y~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (226)
T MTH00139 190 GVFYGQCSEICGANHSFMPIVVEAISPK 217 (226)
T ss_pred EEEEEEChhhcCcCcCCCeEEEEEeCHH
Confidence 999999977643 356677788887665
No 102
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=45.42 E-value=58 Score=31.41 Aligned_cols=79 Identities=6% Similarity=0.043 Sum_probs=54.7
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCcc
Q 009054 413 TSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVG 492 (545)
Q Consensus 413 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG 492 (545)
.+.+.++.|+.+++.+...+ ..|. |+|-+-|. ..|.+ ||....+.|.++.||
T Consensus 139 dn~lvlP~~~~v~~~~tS~D-ViHs-------f~iP~lg~-----------------k~dai---PG~~~~~~~~~~~~G 190 (229)
T MTH00038 139 DNRLVLPYQTPIRVLVSSAD-VLHS-------WAVPSLGV-----------------KMDAV---PGRLNQTTFFISRTG 190 (229)
T ss_pred CceEEEecCeEEEEEEEECC-cccc-------ccccccCc-----------------eeecC---CCceEEEEEEcCCCE
Confidence 35578999999999887665 4454 44443321 23443 677788899999999
Q ss_pred ceeeeecchhhh-hcceEEEEEEeCCCc
Q 009054 493 MWNVRSEFWARQ-YLGQQFYLRVYSPVE 519 (545)
Q Consensus 493 ~w~~HCHil~H~-d~GMm~~~~V~~~~~ 519 (545)
.+..-|--+-.. |.-|-..++|.++++
T Consensus 191 ~~~g~Cse~CG~~Hs~M~~~v~vv~~~~ 218 (229)
T MTH00038 191 LFYGQCSEICGANHSFMPIVIESVPFNT 218 (229)
T ss_pred EEEEEcccccCcCcCCCeEEEEEeCHHH
Confidence 999999887544 455666777776653
No 103
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=45.06 E-value=74 Score=30.68 Aligned_cols=79 Identities=8% Similarity=0.038 Sum_probs=56.0
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCcc
Q 009054 413 TSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVG 492 (545)
Q Consensus 413 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG 492 (545)
.+.+.++.|+.|++.+.+.+ ..| +|+|-+-|. ..| .-||....+.|.++.||
T Consensus 139 dn~lvlP~~~~v~~~~tS~D-ViH-------sf~vP~~~~-----------------k~d---aiPG~~~~~~~~~~~~G 190 (228)
T MTH00008 139 DNRAVLPMQTEIRVLVTAAD-VIH-------SWTVPSLGV-----------------KVD---AVPGRLNQIGFTITRPG 190 (228)
T ss_pred CceEEEecCCEEEEEEEeCC-ccc-------cccccccCc-----------------cee---cCCCceEEEEEEeCCCE
Confidence 34577899999999999875 334 455544431 123 33677788899999999
Q ss_pred ceeeeecchhhh-hcceEEEEEEeCCCc
Q 009054 493 MWNVRSEFWARQ-YLGQQFYLRVYSPVE 519 (545)
Q Consensus 493 ~w~~HCHil~H~-d~GMm~~~~V~~~~~ 519 (545)
.+..-|--+-.. |.-|-..++|+.+++
T Consensus 191 ~~~g~Cse~CG~~Hs~M~~~v~vv~~~~ 218 (228)
T MTH00008 191 VFYGQCSEICGANHSFMPIVLEAVDTKS 218 (228)
T ss_pred EEEEEChhhcCcCccCceeEEEEECHHH
Confidence 999999877544 567777888777653
No 104
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=43.99 E-value=12 Score=30.42 Aligned_cols=52 Identities=27% Similarity=0.457 Sum_probs=24.5
Q ss_pred EEEEeCCCCCc---eEeeC-----CccCCCCCCCCCCCccCCcCCCCCeEEEEEEe--CCccee
Q 009054 73 INVHNSLPEPF---LISWN-----GVQQRRNSYEDGVYGTTCPIPPGKNFTYILQV--KDQIGS 126 (545)
Q Consensus 73 v~~~N~l~~~~---~iH~H-----G~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~--~~~~Gt 126 (545)
|++.|..+.+. +=||- |... ....+||-|-|.-|.||++|.|.=-. +.+.|+
T Consensus 18 I~I~N~~~~~vqL~sR~W~I~d~~g~~~--~V~G~GVVG~~P~L~pGe~f~Y~S~~~l~t~~G~ 79 (90)
T PF04379_consen 18 IRIENHSDESVQLLSRHWIITDADGHVE--EVEGEGVVGQQPVLAPGESFEYTSGCPLSTPSGS 79 (90)
T ss_dssp EEEEE-SSS-EEEEEEEEEEEETTS-EE--EEEEESBTTB--EE-TTEEEEEEEEEEESSSEEE
T ss_pred EEEEECCCCCEEEEccEEEEEeCCCCEE--EEECCceEccCceECCCCcEEEcCCCCcCCCCEE
Confidence 56666665543 33553 2111 11235555556679999988886432 344454
No 105
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=43.21 E-value=89 Score=30.15 Aligned_cols=78 Identities=6% Similarity=0.012 Sum_probs=55.8
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCcc
Q 009054 413 TSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVG 492 (545)
Q Consensus 413 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG 492 (545)
.+.+.++.|+.+++.+...+-. |.|+|-+-|. ..|.+ ||....+.+.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DVi--------Hsf~iP~lg~-----------------k~dai---PG~~~~~~~~~~~~G 190 (230)
T MTH00185 139 DHRMVVPMESPIRVLITAEDVL--------HSWTVPALGV-----------------KMDAV---PGRLNQATFIISRPG 190 (230)
T ss_pred CCeEEEecCCEEEEEEEcCccc--------ccccccccCc-----------------eeEec---CCceEEEEEEeCCcE
Confidence 4456789999999999877643 4566655432 12333 677778888999999
Q ss_pred ceeeeecchhhh-hcceEEEEEEeCCC
Q 009054 493 MWNVRSEFWARQ-YLGQQFYLRVYSPV 518 (545)
Q Consensus 493 ~w~~HCHil~H~-d~GMm~~~~V~~~~ 518 (545)
.+.--|.-+-.. |.-|-..++|..++
T Consensus 191 ~~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (230)
T MTH00185 191 LYYGQCSEICGANHSFMPIVVEAVPLE 217 (230)
T ss_pred EEEEEchhhcCcCcCCCeEEEEEECHH
Confidence 999999887544 56677777777654
No 106
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=41.78 E-value=86 Score=23.47 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=28.2
Q ss_pred EEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceEE
Q 009054 207 FTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSYS 264 (545)
Q Consensus 207 ~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~d 264 (545)
+++.+|+..+||.-.. ..+.+.+-.+++.. +|. .+-+.|.+||++.
T Consensus 2 ~~L~~g~~~~lr~~~~-----~~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~ 47 (63)
T PF11142_consen 2 FELAPGETLSLRAAAG-----QRLRVESGRVWLTR-EGD------PDDYWLQAGDSLR 47 (63)
T ss_pred EEeCCCceEEeEcCCC-----cEEEEccccEEEEC-CCC------CCCEEECCCCEEE
Confidence 5778888888884432 23677777777754 442 2344555555554
No 107
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=41.61 E-value=81 Score=30.36 Aligned_cols=78 Identities=8% Similarity=0.069 Sum_probs=55.1
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccc
Q 009054 414 SVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGM 493 (545)
Q Consensus 414 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~ 493 (545)
+.+.++.|+.+++.+...+ ..| +|+|=+-+. .+|.+ ||....+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViH-------sf~vp~l~~-----------------k~dav---PG~~~~~~~~~~~~G~ 191 (227)
T MTH00154 140 NRLVLPMNTQIRILITAAD-VIH-------SWTVPSLGV-----------------KVDAV---PGRLNQLNFLINRPGL 191 (227)
T ss_pred ceEEEecCCEEEEEEEcCc-hhh-------heeccccCC-----------------eeecC---CCceEEEEEEEcCceE
Confidence 4577899999999887765 344 455544331 23444 6777888999999999
Q ss_pred eeeeecchh-hhhcceEEEEEEeCCCc
Q 009054 494 WNVRSEFWA-RQYLGQQFYLRVYSPVE 519 (545)
Q Consensus 494 w~~HCHil~-H~d~GMm~~~~V~~~~~ 519 (545)
|.--|--+- .-|.-|-..++|+.+++
T Consensus 192 y~g~Cse~CG~~H~~M~~~v~vv~~~~ 218 (227)
T MTH00154 192 FFGQCSEICGANHSFMPIVIESVSVNN 218 (227)
T ss_pred EEEEeechhCcCccCCeEEEEEeCHHH
Confidence 999998774 34566777787776653
No 108
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=40.47 E-value=58 Score=33.00 Aligned_cols=75 Identities=8% Similarity=0.098 Sum_probs=54.8
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccc
Q 009054 414 SVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGM 493 (545)
Q Consensus 414 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~ 493 (545)
+-+.++.|+.|++.+...+-+ |+|+|-+-+. ..|.+ ||-...+.|.+|.||.
T Consensus 151 NeL~iP~g~pV~f~lTS~DVi--------HSF~IP~Lg~-----------------K~dam---PG~~n~l~~~a~~~G~ 202 (315)
T PRK10525 151 NEIAFPANVPVYFKVTSNSVM--------NSFFIPRLGS-----------------QIYAM---AGMQTRLHLIANEPGT 202 (315)
T ss_pred ccEEEecCCEEEEEEEEchhh--------hhhhhhhhCC-----------------eeecC---CCceeEEEEEcCCCEE
Confidence 346789999999999887644 4566665432 12333 6777889999999999
Q ss_pred eeeeecchh-hhhcceEEEEEEeC
Q 009054 494 WNVRSEFWA-RQYLGQQFYLRVYS 516 (545)
Q Consensus 494 w~~HCHil~-H~d~GMm~~~~V~~ 516 (545)
|.-.|--.- .-|..|.+.+.|..
T Consensus 203 Y~G~CaEyCG~gHs~M~f~v~v~~ 226 (315)
T PRK10525 203 YDGISASYSGPGFSGMKFKAIATP 226 (315)
T ss_pred EEEEChhhcCccccCCeEEEEEEC
Confidence 999998875 44567777777763
No 109
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.54 E-value=79 Score=30.46 Aligned_cols=78 Identities=6% Similarity=-0.014 Sum_probs=55.5
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCcc
Q 009054 413 TSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVG 492 (545)
Q Consensus 413 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG 492 (545)
.+.+.++.|+.+++.+...+-. |+|+|-+-|. ..|.+ ||....+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~tS~DVi--------Hsf~vP~lg~-----------------k~da~---PG~~n~~~~~~~~~G 190 (228)
T MTH00076 139 DNRMVVPMESPIRMLITAEDVL--------HSWAVPSLGI-----------------KTDAI---PGRLNQTSFIASRPG 190 (228)
T ss_pred CceEEEecCCEEEEEEEecccc--------ccccccccCc-----------------eEEcc---CCcceeEEEEeCCcE
Confidence 3557799999999998877543 4565554431 22333 577778889999999
Q ss_pred ceeeeecchhhh-hcceEEEEEEeCCC
Q 009054 493 MWNVRSEFWARQ-YLGQQFYLRVYSPV 518 (545)
Q Consensus 493 ~w~~HCHil~H~-d~GMm~~~~V~~~~ 518 (545)
.+---|.-+-.. |..|-..++|++++
T Consensus 191 ~~~g~C~e~CG~~Hs~M~~~v~vv~~~ 217 (228)
T MTH00076 191 VYYGQCSEICGANHSFMPIVVEATPLN 217 (228)
T ss_pred EEEEEChhhcCccccCCceEEEEeCHH
Confidence 999999886543 66777778777664
No 110
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.49 E-value=86 Score=30.92 Aligned_cols=79 Identities=5% Similarity=0.008 Sum_probs=56.2
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCcc
Q 009054 413 TSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVG 492 (545)
Q Consensus 413 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG 492 (545)
.+.+.++.|..+++.+...+ ..| +|+|=+-|. .+|.+ ||..-.+.|.++.||
T Consensus 173 dn~lvlP~~~~v~~~ltS~D-ViH-------Sf~vP~lgv-----------------K~Dai---PGr~n~~~~~~~~~G 224 (262)
T MTH00027 173 DNRLILPVDTNVRVLITAAD-VLH-------SWTVPSLAV-----------------KMDAV---PGRINETGFLIKRPG 224 (262)
T ss_pred eceEEEeeCcEEEEEEEcCc-ccc-------ceecccccC-----------------cccCC---CCceeeEEEEcCCcE
Confidence 34577899999999887665 334 555554432 23444 466667889999999
Q ss_pred ceeeeecchh-hhhcceEEEEEEeCCCc
Q 009054 493 MWNVRSEFWA-RQYLGQQFYLRVYSPVE 519 (545)
Q Consensus 493 ~w~~HCHil~-H~d~GMm~~~~V~~~~~ 519 (545)
.+.-.|.-+- .-|..|-..++|+.+++
T Consensus 225 ~y~g~CsE~CG~~Hs~Mpi~v~vv~~~~ 252 (262)
T MTH00027 225 IFYGQCSEICGANHSFMPIVVESVSLSK 252 (262)
T ss_pred EEEEEcchhcCcCcCCCeEEEEEECHHH
Confidence 9999999875 34677888888877653
No 111
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=37.87 E-value=2.2e+02 Score=24.48 Aligned_cols=61 Identities=16% Similarity=0.325 Sum_probs=41.4
Q ss_pred eEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccc-------eeeEEeEEEEccCceEEEEEEeCC
Q 009054 206 SFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHT-------IQTTYSSLDVHVGQSYSVLVTMDQ 271 (545)
Q Consensus 206 ~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~-------~p~~~~~v~l~pgeR~dv~v~~~~ 271 (545)
.|++..-..|+|++-..+ ..+|.|+|..+ |..++..- .+....++.|..|++|+|-|....
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 356766677999988433 46778888765 55555432 345667889999999999998764
No 112
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=36.46 E-value=1e+02 Score=29.75 Aligned_cols=79 Identities=4% Similarity=-0.070 Sum_probs=56.2
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCcc
Q 009054 413 TSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVG 492 (545)
Q Consensus 413 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG 492 (545)
.+.+.++.|+.+++.+...+- .| +|+|=+-|. .+|.+ ||..-.+.|.++.||
T Consensus 142 dn~l~lP~~~~v~~~itS~DV-iH-------Sf~vP~lg~-----------------K~Dav---PGr~n~~~~~~~~~G 193 (231)
T MTH00080 142 DNRCVLPCDTNIRFCITSSDV-IH-------SWALPSLSI-----------------KMDAM---SGILSTLCYSFPMPG 193 (231)
T ss_pred eCceEeecCcEEEEEEEeCcc-cc-------cccccccCc-----------------eeecc---CCceEEEEEEEcCce
Confidence 345678999999999887753 44 454444331 23544 567778889999999
Q ss_pred ceeeeecchh-hhhcceEEEEEEeCCCc
Q 009054 493 MWNVRSEFWA-RQYLGQQFYLRVYSPVE 519 (545)
Q Consensus 493 ~w~~HCHil~-H~d~GMm~~~~V~~~~~ 519 (545)
.+.--|--+- -.|..|-..++|.++++
T Consensus 194 ~y~g~CsE~CG~~Hs~M~~~v~vv~~~~ 221 (231)
T MTH00080 194 VFYGQCSEICGANHSFMPIAVEVTLLDN 221 (231)
T ss_pred EEEEEehhhcCcCccCCEEEEEEECHHH
Confidence 9999998764 34667888888887653
No 113
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.93 E-value=95 Score=29.85 Aligned_cols=78 Identities=4% Similarity=-0.015 Sum_probs=55.3
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCcc
Q 009054 413 TSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVG 492 (545)
Q Consensus 413 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG 492 (545)
.+.+.++.|+.+++.+...+ ..| +|+|=+-|. ..|.+ ||....+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~tS~D-ViH-------sf~vP~lg~-----------------k~dai---PG~~n~~~~~~~~~G 190 (225)
T MTH00168 139 DNRLVLPMDSKIRVLVTSAD-VLH-------SWTLPSLGL-----------------KMDAV---PGRLNQLAFLSSRPG 190 (225)
T ss_pred cceEEEecCCEEEEEEEeCC-hhh-------ccccccccc-----------------cccCC---CCeEEEEEEEcCCCE
Confidence 45577999999999888775 344 444444331 23443 677778899999999
Q ss_pred ceeeeecchhh-hhcceEEEEEEeCCC
Q 009054 493 MWNVRSEFWAR-QYLGQQFYLRVYSPV 518 (545)
Q Consensus 493 ~w~~HCHil~H-~d~GMm~~~~V~~~~ 518 (545)
.+---|.-+-- .|.-|-..++|++++
T Consensus 191 ~~~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (225)
T MTH00168 191 SFYGQCSEICGANHSFMPIVVEFVPWE 217 (225)
T ss_pred EEEEEcccccCcCcCCCeEEEEEeCHH
Confidence 99999988753 356677778877665
No 114
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=35.81 E-value=62 Score=22.78 Aligned_cols=41 Identities=5% Similarity=-0.078 Sum_probs=31.0
Q ss_pred CCCCccceE-EeCCCCEEEEEEEeCCccceeeeecchhhhhc
Q 009054 466 RDAVSRCTT-QVYPKSWTAIYVALDNVGMWNVRSEFWARQYL 506 (545)
Q Consensus 466 ~~p~~rDTv-~vp~~~~v~irf~adnpG~w~~HCHil~H~d~ 506 (545)
..|+.+-+. ..+.++...++++...-..+=+||..+.|...
T Consensus 4 ~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 4 SKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 445555533 34568888899999988899999999988753
No 115
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.83 E-value=1.3e+02 Score=28.92 Aligned_cols=78 Identities=8% Similarity=-0.012 Sum_probs=56.1
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCcc
Q 009054 413 TSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVG 492 (545)
Q Consensus 413 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG 492 (545)
.+.+.++.|+.+++.+...+-. |+|+|-+-|. ..|.+ ||..-.+.|.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DVi--------Hsf~vP~lg~-----------------K~Dav---PG~~n~~~~~~~~~G 190 (227)
T MTH00117 139 DHRMVIPMESPIRILITAEDVL--------HSWAVPSLGV-----------------KTDAV---PGRLNQTSFITTRPG 190 (227)
T ss_pred cceEEEecCceEEEEEEecchh--------hcccccccCc-----------------eeEec---CCceEEEEEEEcccc
Confidence 3557789999999988877643 5666655432 23433 677788899999999
Q ss_pred ceeeeecchhhh-hcceEEEEEEeCCC
Q 009054 493 MWNVRSEFWARQ-YLGQQFYLRVYSPV 518 (545)
Q Consensus 493 ~w~~HCHil~H~-d~GMm~~~~V~~~~ 518 (545)
.|.--|--+-.. |.-|-..++|.+++
T Consensus 191 ~y~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (227)
T MTH00117 191 VFYGQCSEICGANHSFMPIVVESVPLK 217 (227)
T ss_pred eEEEEeccccccCccCCeEEEEEcCHH
Confidence 999999876544 56666677777654
No 116
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=33.43 E-value=2.7e+02 Score=23.73 Aligned_cols=61 Identities=20% Similarity=0.345 Sum_probs=37.1
Q ss_pred EEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccc-eeeEEeEEEEccCceEEEEEEeCCC
Q 009054 207 FTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHT-IQTTYSSLDVHVGQSYSVLVTMDQP 272 (545)
Q Consensus 207 ~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~-~p~~~~~v~l~pgeR~dv~v~~~~~ 272 (545)
+++.....|+|.+...+ ..+|.|+|.. ||..++..- .+.....+.|..|++|.+.|...+.
T Consensus 52 i~~~~~G~y~f~~~~~~---~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~ 113 (136)
T smart00758 52 LKPPEDGEYTFSITSDD---GARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEA 113 (136)
T ss_pred EECCCCccEEEEEEcCC---cEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeC
Confidence 45554456888885333 3577888763 344333221 2233456888888888888877643
No 117
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=32.98 E-value=3.2e+02 Score=26.36 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=30.9
Q ss_pred ceEEEeCCcEEEEEEEecCCCCee-eEEEeCceeEEEeecCccce
Q 009054 205 ASFTVEQGKTYRFRISNVGLQHSL-NFRIQGHKMKLVEVEGTHTI 248 (545)
Q Consensus 205 ~~~~v~~G~~~rlRliNa~~~~~~-~~~i~gh~~~via~DG~~~~ 248 (545)
..+-+++| +|.||+|.-+-...- -+.+-+.-+.++|.|+.+.+
T Consensus 94 tPLyl~aG-tY~F~~iSPAka~~~dgk~~I~NGeYl~aTd~rytq 137 (310)
T PF15415_consen 94 TPLYLNAG-TYYFRMISPAKASNSDGKMNIDNGEYLYATDNRYTQ 137 (310)
T ss_pred CceEEecc-eEEEEEeccccccccCceEEeCCceEEEEcCCceeE
Confidence 66789997 799999987643322 22334667899999999974
No 118
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=32.59 E-value=35 Score=28.18 Aligned_cols=30 Identities=27% Similarity=0.221 Sum_probs=25.4
Q ss_pred EEEcCcccCceEEEecCCEEEEEEEeCCCC
Q 009054 52 ILINGQFPGPDIYSVTNDNLIINVHNSLPE 81 (545)
Q Consensus 52 ~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~ 81 (545)
..+||+.-=|.=.|+.||.|.|++.|.+-.
T Consensus 36 V~vNG~~aKpS~~VK~GD~l~i~~~~~~~~ 65 (100)
T COG1188 36 VKVNGQRAKPSKEVKVGDILTIRFGNKEFT 65 (100)
T ss_pred EEECCEEcccccccCCCCEEEEEeCCcEEE
Confidence 467888777888999999999999998643
No 119
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=32.28 E-value=4.6e+02 Score=25.14 Aligned_cols=77 Identities=9% Similarity=-0.063 Sum_probs=51.3
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCch-hhhh
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVG-FQKA 138 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~~~~ 138 (545)
...|.+-.|..|++.+++.. .+ |+..++. - +++.-.-||..-...|+ ++++|+|+-.|..- ....
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D----Vi--Hsf~ip~----~---~~k~d~~Pg~~~~~~~~-~~~~g~y~~~C~e~CG~~H 204 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD----VI--HSWTVPS----L---GVKVDAIPGRLNQLSFE-PKRPGVFYGQCSEICGANH 204 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc----cc--cceeccc----c---CceeECCCCcceeEEEE-eCCCEEEEEECccccCcCc
Confidence 35688889999999888852 22 4544321 1 12334568999888888 47899999888754 3334
Q ss_pred cCeeeEEEEeCC
Q 009054 139 AGGFGGIRILSR 150 (545)
Q Consensus 139 ~Gl~G~liV~~~ 150 (545)
..|.+.++|.++
T Consensus 205 ~~M~~~v~v~~~ 216 (228)
T MTH00140 205 SFMPIVVEAVPL 216 (228)
T ss_pred CCCeEEEEEECH
Confidence 457777777653
No 120
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=31.89 E-value=1.8e+02 Score=24.41 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=27.1
Q ss_pred EEEEEEEecCCCC-eeeEEEeCce-eEEEeecCccceeeEEeEEEEccCceEEEEEEeC
Q 009054 214 TYRFRISNVGLQH-SLNFRIQGHK-MKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMD 270 (545)
Q Consensus 214 ~~rlRliNa~~~~-~~~~~i~gh~-~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~ 270 (545)
.|+++|+|-+... .+.+.++|.+ +.+. . ..+.+.|.||+..++-|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~-------~--~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQ-------G--PENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE--------E--S--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEE-------C--CCcceEECCCCEEEEEEEEE
Confidence 4899999999754 5666666632 2220 1 34678899999888776554
No 121
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.91 E-value=1.8e+02 Score=28.19 Aligned_cols=79 Identities=6% Similarity=0.023 Sum_probs=55.5
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCcc
Q 009054 413 TSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVG 492 (545)
Q Consensus 413 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG 492 (545)
.+.+.++.|+.+++.+.+.+ ..| +|+|-+-|. ..|. -||....+.|.++.||
T Consensus 143 dn~lvlP~~~~v~~~itS~D-ViH-------sf~vp~lg~-----------------k~da---iPG~~~~~~~~~~~~G 194 (234)
T MTH00051 143 DNRLIVPIQTQVRVLVTAAD-VLH-------SFAVPSLSV-----------------KIDA---VPGRLNQTSFFIKRPG 194 (234)
T ss_pred ceEEEEecCcEEEEEEEeCc-hhc-------cccccccCc-----------------eeEc---cCCceEeEEEEeCCCE
Confidence 35578999999999998875 334 455544431 1233 3577778889999999
Q ss_pred ceeeeecchhh-hhcceEEEEEEeCCCc
Q 009054 493 MWNVRSEFWAR-QYLGQQFYLRVYSPVE 519 (545)
Q Consensus 493 ~w~~HCHil~H-~d~GMm~~~~V~~~~~ 519 (545)
.+---|.-+-- .|.-|-..++|+.+++
T Consensus 195 ~y~g~Cse~CG~~Hs~M~i~v~vv~~~~ 222 (234)
T MTH00051 195 VFYGQCSEICGANHSFMPIVIEGVSLDK 222 (234)
T ss_pred EEEEEChhhcCcccccCeeEEEEECHHH
Confidence 99999988653 3566777777776653
No 122
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=29.41 E-value=1.2e+02 Score=27.17 Aligned_cols=73 Identities=12% Similarity=0.070 Sum_probs=44.3
Q ss_pred hcCCCeEEEEEEEEEEEecC--CCeeEEEEEEcCcc-cCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCC
Q 009054 25 RAESPYRFFTWNVTYGDIYP--LGVRQQGILINGQF-PGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGV 101 (545)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~~~--dG~~~~~~~~ng~~-pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv 101 (545)
.+......|-+++++..... .|...++ .|.+ +|..-+. .|..++++++-. .....++..|. .+..+.+|.
T Consensus 28 ~a~~~~~~yf~tpse~~~~~~~~g~~vrv---gG~V~~gSi~~~-~~~~~~F~ltD~-~~~i~V~Y~G~--lPd~F~eg~ 100 (148)
T PRK13254 28 YALRQNIVFFYTPSEVAEGEAPAGRRFRL---GGLVEKGSVQRG-DGLTVRFVVTDG-NATVPVVYTGI--LPDLFREGQ 100 (148)
T ss_pred HHHHhCCceeeCHHHHhcCCccCCCeEEE---eEEEecCcEEeC-CCCEEEEEEEeC-CeEEEEEECCC--CCccccCCC
Confidence 34455566777777654432 2444443 3333 3433333 778888888776 56678899997 556677776
Q ss_pred Ccc
Q 009054 102 YGT 104 (545)
Q Consensus 102 ~~~ 104 (545)
..+
T Consensus 101 ~VV 103 (148)
T PRK13254 101 GVV 103 (148)
T ss_pred EEE
Confidence 544
No 123
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=29.37 E-value=1.5e+02 Score=25.33 Aligned_cols=73 Identities=19% Similarity=0.284 Sum_probs=40.7
Q ss_pred EEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceee----EEeEEEEccCceEEEEEEeCC--CCcceEEEE
Q 009054 207 FTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQT----TYSSLDVHVGQSYSVLVTMDQ--PPQDFYIAV 280 (545)
Q Consensus 207 ~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~----~~~~v~l~pgeR~dv~v~~~~--~~g~y~~~~ 280 (545)
-.+..|+.+++|+-=......-.+. -.+.+...+|..+--. ....+....++++.+.++++. .+|.|.+.+
T Consensus 29 ~~~~~ge~~~i~i~~~~~~~i~~~~---~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i~v 105 (142)
T PF14524_consen 29 SSFESGEPIRIRIDYEVNEDIDDPV---FGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSISV 105 (142)
T ss_dssp SSEETTSEEEEEEEEEESS-EEEEE---EEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEEEE
T ss_pred eEEeCCCEEEEEEEEEECCCCCccE---EEEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEEEE
Confidence 3477788888877655543332222 2455566677654211 122445554899999998876 589999988
Q ss_pred ee
Q 009054 281 ST 282 (545)
Q Consensus 281 ~~ 282 (545)
..
T Consensus 106 ~l 107 (142)
T PF14524_consen 106 GL 107 (142)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 124
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=29.13 E-value=60 Score=28.85 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=21.0
Q ss_pred eCCCCEEEEEEEe-CCc---cceeeeecch
Q 009054 476 VYPKSWTAIYVAL-DNV---GMWNVRSEFW 501 (545)
Q Consensus 476 vp~~~~v~irf~a-dnp---G~w~~HCHil 501 (545)
|+||..+.|.++. .|| |.|.|+|=..
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 5789999999954 576 8999999774
No 125
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=28.83 E-value=2.9e+02 Score=21.66 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=14.5
Q ss_pred EeCCcEEEEEEEecCCCCeeeEEE
Q 009054 209 VEQGKTYRFRISNVGLQHSLNFRI 232 (545)
Q Consensus 209 v~~G~~~rlRliNa~~~~~~~~~i 232 (545)
.+.||+++|++-..-....+-|.+
T Consensus 3 ~~~Ge~v~~~~~~~~~~Yl~l~~~ 26 (83)
T PF14326_consen 3 YRVGERVRFRVTSNRDGYLYLFYI 26 (83)
T ss_pred ccCCCEEEEEEEeCCCeEEEEEEE
Confidence 567888888877644433333333
No 126
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=28.64 E-value=71 Score=28.36 Aligned_cols=29 Identities=31% Similarity=0.600 Sum_probs=22.9
Q ss_pred CCcCCCCCeEEEEEE-e--CCcceeeeeecCc
Q 009054 105 TCPIPPGKNFTYILQ-V--KDQIGSYFYFPSV 133 (545)
Q Consensus 105 q~~i~pG~~~~y~~~-~--~~~~Gt~wYH~H~ 133 (545)
..||+||++++-.+. + |...|+|-|++-.
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 579999999999994 2 4557999888764
No 127
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=27.43 E-value=2.5e+02 Score=24.00 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=33.3
Q ss_pred eEEEecCCEEEEEEEeCCCC-----CceEeeC--CccCCCC-CCCCCCC--ccCCcCCCCCeEEEEEEeC
Q 009054 62 DIYSVTNDNLIINVHNSLPE-----PFLISWN--GVQQRRN-SYEDGVY--GTTCPIPPGKNFTYILQVK 121 (545)
Q Consensus 62 ~i~v~~Gd~v~v~~~N~l~~-----~~~iH~H--G~~~~~~-~~~DGv~--~~q~~i~pG~~~~y~~~~~ 121 (545)
.=.+++|+.+.+.+.=...+ .+.+|+. |+..+-. ...|+=- +..|||..|+.++|.+.++
T Consensus 23 PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~~ 92 (123)
T cd00916 23 PCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSLP 92 (123)
T ss_pred CCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEeee
Confidence 34566777777666533222 1233332 5433211 1234311 2469999999999999763
No 128
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=27.23 E-value=2.3e+02 Score=24.30 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=37.7
Q ss_pred EEEEEEEecCCCCeeeEEEeCce-eEEEeecCccce------eeEEeEEEEccCceEEEEEEeC
Q 009054 214 TYRFRISNVGLQHSLNFRIQGHK-MKLVEVEGTHTI------QTTYSSLDVHVGQSYSVLVTMD 270 (545)
Q Consensus 214 ~~rlRliNa~~~~~~~~~i~gh~-~~via~DG~~~~------p~~~~~v~l~pgeR~dv~v~~~ 270 (545)
.++|.|-|.|.... .|.|.+ +.....||..+. ......+.|.||++.-+.|...
T Consensus 21 ~~~l~~tN~s~~~C---~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~ 81 (131)
T PF14016_consen 21 HATLTFTNTSDTPC---TLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWS 81 (131)
T ss_pred EEEEEEEECCCCcE---EeccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEe
Confidence 45899999998665 455542 444577777442 1235679999999999888776
No 129
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=26.89 E-value=4.5e+02 Score=23.30 Aligned_cols=82 Identities=26% Similarity=0.329 Sum_probs=52.7
Q ss_pred CeEEEcccCCCCceEEEeCC-cEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeE-------EeEEEEccCceE-
Q 009054 193 DGILINGHGSNGASFTVEQG-KTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTT-------YSSLDVHVGQSY- 263 (545)
Q Consensus 193 ~~~liNG~~~~~~~~~v~~G-~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~-------~~~v~l~pgeR~- 263 (545)
+.-.||.-+. +...-..| .+|-|.+-|.|... +.++...++|+ +||+.+.|.. -++|.|.|||--
T Consensus 51 dFaIIndPg~--i~~~~~~g~~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ 124 (154)
T COG3354 51 DFAIINDPGQ--IPYVGTDGPYTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGR 124 (154)
T ss_pred cEEEecCCCC--CccccCCCceEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceee
Confidence 5566776665 33333222 57899999999854 36777777776 7998876643 247789999977
Q ss_pred EEEEEeCCCCcceEEEEe
Q 009054 264 SVLVTMDQPPQDFYIAVS 281 (545)
Q Consensus 264 dv~v~~~~~~g~y~~~~~ 281 (545)
++.+.-. ..|.-.+...
T Consensus 125 ev~vn~~-lSGyhri~V~ 141 (154)
T COG3354 125 EVTVNEA-LSGYHRIVVS 141 (154)
T ss_pred EEEeccC-CCcceEEEEE
Confidence 6666554 3354444443
No 130
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.45 E-value=4.3e+02 Score=24.71 Aligned_cols=75 Identities=13% Similarity=-0.028 Sum_probs=48.4
Q ss_pred eEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCch-hhhhcC
Q 009054 62 DIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVG-FQKAAG 140 (545)
Q Consensus 62 ~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~~~~~G 140 (545)
.+.+..|..|+++++-.. .+ |+..++. . +.+.-.-||..-...|+ ++++|+|.-.|..- ......
T Consensus 117 ~l~lp~g~~v~~~ltS~D----Vi--Hsf~vp~---l----~~k~d~~PG~~~~~~~~-~~~~G~y~g~C~e~CG~~H~~ 182 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD----VI--HSFSVPD---L----NLKMDAIPGRINHLFFC-PDRHGVFVGYCSELCGVGHSY 182 (194)
T ss_pred eEEEeCCCEEEeeeecCc----cc--cceeccc---c----CceeecCCCceEEEEEE-cCCCEEEEEEeehhhCcCccc
Confidence 367777777777766442 22 3443321 1 12234568999888888 58899999888864 444455
Q ss_pred eeeEEEEeCC
Q 009054 141 GFGGIRILSR 150 (545)
Q Consensus 141 l~G~liV~~~ 150 (545)
|.+-+.|.++
T Consensus 183 M~~~v~v~~~ 192 (194)
T MTH00047 183 MPIVIEVVDV 192 (194)
T ss_pred CcEEEEEEcC
Confidence 7788888764
No 131
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=24.85 E-value=63 Score=25.62 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=24.0
Q ss_pred eEEEEEEcCcccCceEEEecCCEEEEE
Q 009054 48 RQQGILINGQFPGPDIYSVTNDNLIIN 74 (545)
Q Consensus 48 ~~~~~~~ng~~pgP~i~v~~Gd~v~v~ 74 (545)
+...+.+||+.-++.-+++.||+|.|.
T Consensus 48 EV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 48 EVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HeEEEEECCEECCCcccCCCCCEEEEE
Confidence 466899999999999999999999874
No 132
>COG1470 Predicted membrane protein [Function unknown]
Probab=24.57 E-value=3.6e+02 Score=28.82 Aligned_cols=72 Identities=22% Similarity=0.407 Sum_probs=45.5
Q ss_pred ceEEEeCCc--EEEEEEEecCCCC--eeeEEEeCceeEEEeecCccceeeEEeEEEEccCceE--EEEEEeCC--CCcce
Q 009054 205 ASFTVEQGK--TYRFRISNVGLQH--SLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSY--SVLVTMDQ--PPQDF 276 (545)
Q Consensus 205 ~~~~v~~G~--~~rlRliNa~~~~--~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~--dv~v~~~~--~~g~y 276 (545)
-++++.+|+ ..++++-|.|+.. -..+.+++-.=|=+.+|+..+ + .|.||||- ++-++++. .+|+|
T Consensus 389 ~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~--sL~pge~~tV~ltI~vP~~a~aGdY 461 (513)
T COG1470 389 YRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----P--SLEPGESKTVSLTITVPEDAGAGDY 461 (513)
T ss_pred EEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----c--ccCCCCcceEEEEEEcCCCCCCCcE
Confidence 356777774 4588899998654 455666665557777776532 2 24566554 44455553 46899
Q ss_pred EEEEeec
Q 009054 277 YIAVSTR 283 (545)
Q Consensus 277 ~~~~~~~ 283 (545)
.+.....
T Consensus 462 ~i~i~~k 468 (513)
T COG1470 462 RITITAK 468 (513)
T ss_pred EEEEEEe
Confidence 9887654
No 133
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=24.31 E-value=3.7e+02 Score=22.97 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=35.1
Q ss_pred CceEEEecCCEEEEEEEeCCCCC---ceEeeC----CccCC-CCCCCCCCCccCCcCCCCCeEEEEEEeC
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEP---FLISWN----GVQQR-RNSYEDGVYGTTCPIPPGKNFTYILQVK 121 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~---~~iH~H----G~~~~-~~~~~DGv~~~q~~i~pG~~~~y~~~~~ 121 (545)
+..=.+++|..+.+.+.=..... .+...| |+..+ .-+..||=-.+.|||..|+.++|.+.++
T Consensus 19 ~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~l~CPl~~G~~~~y~~~~~ 88 (120)
T cd00918 19 GDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKYVKCPIKKGQHYDIKYTWN 88 (120)
T ss_pred CCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCcccEeCCCcCCcEEEEEEeee
Confidence 34456777888777665332221 223333 43322 1123455222379999999999999863
No 134
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=24.25 E-value=29 Score=31.60 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=25.0
Q ss_pred EEEecCCEEEEEEEeCCCCCceEeeCCcc
Q 009054 63 IYSVTNDNLIINVHNSLPEPFLISWNGVQ 91 (545)
Q Consensus 63 i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~ 91 (545)
+..+-++++.+++.|++....++||||+-
T Consensus 71 ~~~n~~~~~~~d~~~rlt~~~s~~W~~vl 99 (191)
T KOG4387|consen 71 LPGNDRKPGILDFQERLTVAKSMNWHGVL 99 (191)
T ss_pred ccccCCCCcEEeccchhheeeecccceEE
Confidence 45667788899999999999999999984
No 135
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=23.60 E-value=1.8e+02 Score=23.47 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=24.5
Q ss_pred EEEEEEEecCCCCeeeEEEeCceeEEEeecCccce----eeEEeEEEEccCceEEEE
Q 009054 214 TYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTI----QTTYSSLDVHVGQSYSVL 266 (545)
Q Consensus 214 ~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~----p~~~~~v~l~pgeR~dv~ 266 (545)
.|++||-|.+.. .+.|-...+.|...||...+ -+.-+.=.|.|||.+..-
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y~ 68 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEYT 68 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEEc
Confidence 378899998886 34554555555555553210 011123367888866543
No 136
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=23.53 E-value=1.3e+02 Score=25.58 Aligned_cols=59 Identities=22% Similarity=0.241 Sum_probs=35.8
Q ss_pred chhHHHHHHHHHHHHHHHhhhcCCC-eEEEEEEEEEEEecC-CCeeEEEEEEcCcccCceE
Q 009054 5 SALIWQLCVVYFLAMFAIVARAESP-YRFFTWNVTYGDIYP-LGVRQQGILINGQFPGPDI 63 (545)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~-dG~~~~~~~~ng~~pgP~i 63 (545)
+.+.|-++++++|++.+.--.+..+ +...||.++.++-+| +|++..+.---..-|.|.+
T Consensus 15 ~~~i~~l~i~~l~~c~~~~es~~~k~~~pVT~hVen~e~~pi~~~ev~lmKa~ds~~qPs~ 75 (131)
T PF10794_consen 15 SKLIWFLVIIVLCGCIANNESAASKVVNPVTFHVENAEGQPIKDFEVTLMKAADSDPQPSK 75 (131)
T ss_pred hhHHHHHHHHHHhcccccchhhhceecccEEEEEecCCCCcccceEEEEEeccccCCCCch
Confidence 3456666666665544432223333 458999999988775 4777666654455666654
No 137
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.08 E-value=58 Score=32.03 Aligned_cols=9 Identities=22% Similarity=0.420 Sum_probs=7.5
Q ss_pred eeeeecCch
Q 009054 126 SYFYFPSVG 134 (545)
Q Consensus 126 t~wYH~H~~ 134 (545)
.=|||+|.+
T Consensus 134 VGWyHSHPg 142 (347)
T KOG1554|consen 134 VGWYHSHPG 142 (347)
T ss_pred eeeeecCCC
Confidence 469999986
No 138
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.69 E-value=6.9e+02 Score=24.01 Aligned_cols=43 Identities=9% Similarity=-0.112 Sum_probs=30.3
Q ss_pred CcCCCCCeEEEEEEeCCcceeeeeecCch-hhhhcCeeeEEEEeC
Q 009054 106 CPIPPGKNFTYILQVKDQIGSYFYFPSVG-FQKAAGGFGGIRILS 149 (545)
Q Consensus 106 ~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~~~~~Gl~G~liV~~ 149 (545)
.-.-||..-...|. ++++|+|+-.|..- ......|.+.+.|.+
T Consensus 172 ~da~PG~~~~~~~~-~~~~G~~~g~C~e~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 172 MDAVPGRLNQTAFI-ASRPGVFYGQCSEICGANHSFMPIVVEAVP 215 (230)
T ss_pred cccCCCceEEEEEE-eCCceEEEEEChhhccccccCCcEEEEEEC
Confidence 44568999888888 47899999988753 333345666666655
No 139
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=20.70 E-value=2.8e+02 Score=24.08 Aligned_cols=48 Identities=15% Similarity=0.236 Sum_probs=27.7
Q ss_pred EEEEEEecCCCCeeeEEEeCceeEEEeecCccce----eeEEeEEEEccCceEEE
Q 009054 215 YRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTI----QTTYSSLDVHVGQSYSV 265 (545)
Q Consensus 215 ~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~----p~~~~~v~l~pgeR~dv 265 (545)
|++||.|.+.. .+.|-+..+.+...||...+ .+.-+.=.|.|||.+..
T Consensus 33 Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 33 YTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 68888887753 34566666666666654321 11222336778876654
No 140
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.43 E-value=1.6e+02 Score=25.69 Aligned_cols=37 Identities=19% Similarity=-0.014 Sum_probs=17.2
Q ss_pred CCCcchhHHHHHHHHHHHHHHHhhhcCCCeEEEEEEEE
Q 009054 1 MLPKSALIWQLCVVYFLAMFAIVARAESPYRFFTWNVT 38 (545)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 38 (545)
|++++.....|+.+.+...+.. +++.+.+-.+|+++.
T Consensus 1 m~~~~~~~l~Ll~aa~sL~~~~-aaaaeatgkLTvti~ 37 (151)
T COG4704 1 MLNISRRRLFLLAAALSLVSLK-AAAAEATGKLTVTIN 37 (151)
T ss_pred CccHHHHHHHHHHHHHHHHhHH-HHHHhhcCceEEEEc
Confidence 6777776444444333333332 233334444555544
Done!