Query 009054
Match_columns 545
No_of_seqs 227 out of 1779
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 17:47:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1aoz_A Ascorbate oxidase; oxid 100.0 1E-101 5E-106 840.5 56.1 492 29-538 2-542 (552)
2 3sqr_A Laccase; multicopper ox 100.0 5.9E-97 2E-101 797.9 51.5 470 27-538 64-565 (580)
3 1zpu_A Iron transport multicop 100.0 1.7E-96 6E-101 794.9 53.1 478 29-541 1-506 (534)
4 1v10_A Laccase; multicopper bl 100.0 2.9E-96 1E-100 792.3 50.0 476 26-541 19-515 (521)
5 3t6v_A Laccase; beta barrel, o 100.0 1.1E-95 4E-100 779.6 49.7 468 31-539 5-493 (495)
6 3pxl_A Laccase; 4-copper prote 100.0 3.3E-95 1.1E-99 775.7 51.9 468 31-541 4-495 (499)
7 1hfu_A Laccase 1; oxidoreducta 100.0 6.3E-94 2.2E-98 771.5 48.5 464 31-540 5-493 (503)
8 2q9o_A Laccase-1; multicopper 100.0 2.9E-93 9.8E-98 774.5 50.0 479 26-540 29-546 (559)
9 2xu9_A Laccase; oxidoreductase 100.0 7.3E-88 2.5E-92 713.6 42.2 403 26-515 12-439 (439)
10 2uxt_A Protein SUFI, SUFI; oxi 100.0 9.2E-87 3.2E-91 706.0 33.8 403 29-518 17-443 (451)
11 3abg_A Bilirubin oxidase; clea 100.0 6.5E-85 2.2E-89 703.3 41.3 416 30-518 36-477 (534)
12 3zx1_A Oxidoreductase, putativ 100.0 6.4E-84 2.2E-88 684.3 43.0 408 25-515 45-480 (481)
13 2wsd_A Spore coat protein A; o 100.0 1.4E-83 4.9E-88 692.6 40.9 428 29-518 24-512 (513)
14 3gyr_A PHS, phenoxazinone synt 100.0 8.4E-82 2.9E-86 697.2 42.6 441 28-519 30-594 (612)
15 3aw5_A Multicopper oxidase; be 100.0 1.5E-82 5.3E-87 672.6 32.4 382 52-515 28-448 (448)
16 3od3_A Blue copper oxidase CUE 100.0 9.1E-82 3.1E-86 667.4 37.8 411 29-514 16-488 (488)
17 2g23_A PHS, phenoxazinone synt 100.0 1.2E-79 4.1E-84 667.0 44.6 441 28-518 30-593 (612)
18 2j5w_A Ceruloplasmin, ferroxid 100.0 2.3E-54 7.9E-59 499.5 39.6 392 24-451 15-488 (1065)
19 3g5w_A Multicopper oxidase typ 100.0 3.7E-54 1.3E-58 435.6 31.1 266 29-301 1-278 (318)
20 2r7e_A Coagulation factor VIII 100.0 2.5E-56 8.5E-61 496.5 11.2 240 30-283 46-314 (742)
21 2zwn_A Two-domain type laccase 100.0 1.2E-52 4.2E-57 429.0 33.5 266 29-301 2-279 (339)
22 2dv6_A Nitrite reductase; elec 100.0 7.8E-51 2.7E-55 432.5 28.2 399 26-519 24-436 (447)
23 1kbv_A ANIA, major outer membr 100.0 6.3E-50 2.2E-54 407.0 30.3 260 26-302 34-310 (327)
24 3kw8_A Laccase, putative coppe 100.0 2.7E-50 9.3E-55 400.0 24.3 245 25-519 2-268 (276)
25 3gdc_A Multicopper oxidase; be 100.0 2.6E-48 8.8E-53 388.1 29.8 233 29-283 33-273 (288)
26 2zoo_A Probable nitrite reduct 100.0 2.4E-46 8E-51 397.2 30.9 266 25-302 23-300 (442)
27 2j5w_A Ceruloplasmin, ferroxid 100.0 4.2E-47 1.4E-51 438.9 21.7 389 46-518 615-1060(1065)
28 1mzy_A Copper-containing nitri 100.0 4E-46 1.4E-50 380.6 25.7 269 24-302 26-321 (333)
29 3cg8_A Laccase; oxidoreductase 100.0 9E-46 3.1E-50 377.8 27.1 253 27-535 45-319 (343)
30 1oe1_A Dissimilatory copper-co 100.0 1.8E-45 6E-50 376.5 25.7 267 26-302 28-321 (336)
31 2bw4_A Copper-containing nitri 100.0 2.8E-45 9.5E-50 375.6 24.0 267 25-302 33-327 (340)
32 3tas_A Small laccase, multi-co 100.0 7.1E-45 2.4E-49 367.3 22.4 240 24-299 7-271 (313)
33 3t9w_A Small laccase, multi-co 100.0 1.6E-44 5.5E-49 361.9 22.3 242 24-300 23-288 (299)
34 1sdd_B Coagulation factor V; c 100.0 2.4E-41 8.3E-46 374.4 20.1 263 27-298 3-326 (647)
35 2dv6_A Nitrite reductase; elec 100.0 1.4E-39 4.9E-44 345.7 32.4 256 28-301 161-435 (447)
36 1sdd_A Coagulation factor V; c 100.0 4.2E-42 1.4E-46 346.1 7.3 211 50-283 50-285 (306)
37 2r7e_B Coagulation factor VIII 100.0 8.8E-41 3E-45 372.1 12.8 249 26-283 129-441 (770)
38 2r7e_A Coagulation factor VIII 100.0 2.5E-37 8.6E-42 343.9 4.5 216 57-283 448-696 (742)
39 3gdc_A Multicopper oxidase; be 100.0 5.2E-30 1.8E-34 255.7 16.8 228 192-516 54-288 (288)
40 3g5w_A Multicopper oxidase typ 100.0 3.8E-29 1.3E-33 252.6 16.8 247 193-518 23-278 (318)
41 2zwn_A Two-domain type laccase 100.0 8.9E-29 3.1E-33 252.5 18.2 244 192-518 23-279 (339)
42 3tas_A Small laccase, multi-co 99.9 6.5E-27 2.2E-31 235.9 21.1 218 198-520 36-275 (313)
43 3t9w_A Small laccase, multi-co 99.9 6.6E-27 2.3E-31 234.1 19.2 219 198-519 52-290 (299)
44 1sdd_A Coagulation factor V; c 99.9 4.6E-25 1.6E-29 221.8 3.5 232 194-517 51-301 (306)
45 1sdd_B Coagulation factor V; c 99.9 3.5E-22 1.2E-26 221.0 18.2 240 204-517 68-328 (647)
46 2bw4_A Copper-containing nitri 99.9 1.5E-21 5E-26 199.5 20.4 258 192-519 59-327 (340)
47 1kbv_A ANIA, major outer membr 99.9 9.5E-22 3.3E-26 199.4 18.0 244 193-518 59-309 (327)
48 1mzy_A Copper-containing nitri 99.8 3.3E-20 1.1E-24 188.9 20.9 258 193-518 53-320 (333)
49 2r7e_B Coagulation factor VIII 99.8 2.5E-22 8.5E-27 223.8 5.4 239 204-515 198-455 (770)
50 2zoo_A Probable nitrite reduct 99.8 2.9E-19 1E-23 189.0 18.2 247 193-519 49-300 (442)
51 1oe1_A Dissimilatory copper-co 99.8 2.6E-18 9E-23 175.1 21.9 257 193-519 54-321 (336)
52 2uxt_A Protein SUFI, SUFI; oxi 99.7 2.8E-15 9.7E-20 158.3 21.4 234 30-283 152-426 (451)
53 2xu9_A Laccase; oxidoreductase 99.7 3.2E-15 1.1E-19 157.6 20.6 235 30-283 146-425 (439)
54 3cvb_A Plastocyanin; cupredoxi 99.6 9.4E-17 3.2E-21 134.8 3.8 90 56-149 14-105 (105)
55 1hfu_A Laccase 1; oxidoreducta 99.6 2.8E-14 9.7E-19 152.8 20.3 248 32-283 143-455 (503)
56 1v10_A Laccase; multicopper bl 99.6 2.3E-14 7.8E-19 154.1 19.4 226 50-283 192-476 (521)
57 3kw8_A Laccase, putative coppe 99.6 9.6E-15 3.3E-19 144.3 12.1 99 52-152 157-268 (276)
58 3t6v_A Laccase; beta barrel, o 99.5 3.1E-13 1.1E-17 143.9 18.8 231 49-283 168-456 (495)
59 3zx1_A Oxidoreductase, putativ 99.5 1.3E-12 4.4E-17 138.3 20.0 239 31-283 181-466 (481)
60 3pxl_A Laccase; 4-copper prote 99.5 2.5E-12 8.5E-17 136.9 20.6 231 49-283 166-456 (499)
61 1aoz_A Ascorbate oxidase; oxid 99.5 3.2E-12 1.1E-16 138.5 21.2 204 62-283 205-510 (552)
62 1zpu_A Iron transport multicop 99.4 2.1E-12 7.2E-17 139.0 19.1 230 49-283 167-466 (534)
63 1iby_A Nitrosocyanin; RED copp 99.4 6.8E-13 2.3E-17 112.5 12.0 105 31-149 2-112 (112)
64 2cal_A Rusticyanin; iron respi 99.4 3.7E-13 1.3E-17 120.5 10.8 93 51-148 52-154 (154)
65 2q9o_A Laccase-1; multicopper 99.4 5.1E-12 1.7E-16 136.9 20.4 233 49-283 195-506 (559)
66 3cg8_A Laccase; oxidoreductase 99.4 1.3E-12 4.4E-17 132.9 12.0 100 52-153 198-310 (343)
67 3od3_A Blue copper oxidase CUE 99.4 7.7E-12 2.6E-16 132.3 17.4 247 31-283 151-475 (488)
68 3aw5_A Multicopper oxidase; be 99.4 1.9E-11 6.4E-16 128.8 19.9 226 31-283 138-434 (448)
69 1fwx_A Nitrous oxide reductase 99.3 3.7E-12 1.3E-16 136.3 11.5 96 45-150 497-593 (595)
70 2g23_A PHS, phenoxazinone synt 99.3 5.4E-11 1.9E-15 129.1 20.1 230 50-283 255-576 (612)
71 2ov0_A Amicyanin; beta-sandwic 99.3 2.1E-11 7.3E-16 101.9 10.7 78 55-148 27-105 (105)
72 2wsd_A Spore coat protein A; o 99.3 1.5E-11 5.1E-16 132.0 12.1 223 49-283 230-495 (513)
73 3abg_A Bilirubin oxidase; clea 99.3 5.7E-11 2E-15 127.7 16.2 226 49-283 201-460 (534)
74 2aan_A Auracyanin A; cupredoxi 99.2 3.3E-11 1.1E-15 106.2 7.1 94 415-515 36-139 (139)
75 3sqr_A Laccase; multicopper ox 99.2 1.6E-09 5.4E-14 116.9 21.2 229 50-283 226-529 (580)
76 3cvb_A Plastocyanin; cupredoxi 99.1 5.1E-11 1.7E-15 99.5 6.4 84 415-515 20-104 (105)
77 2gim_A Plastocyanin; beta shee 99.1 3.4E-10 1.2E-14 94.7 9.1 83 60-149 19-106 (106)
78 3gyr_A PHS, phenoxazinone synt 99.0 1.1E-08 3.8E-13 112.3 19.3 90 193-283 459-576 (612)
79 2aan_A Auracyanin A; cupredoxi 99.0 2E-09 6.8E-14 94.7 10.6 90 57-148 31-139 (139)
80 1qhq_A Protein (auracyanin); e 98.9 1.4E-08 5E-13 89.2 12.7 91 58-149 30-140 (140)
81 2gim_A Plastocyanin; beta shee 98.8 7E-09 2.4E-13 86.6 7.9 84 415-515 21-105 (106)
82 4hci_A Cupredoxin 1; structura 98.8 1.1E-08 3.8E-13 84.4 8.9 79 55-148 22-100 (100)
83 3c75_A Amicyanin; copper prote 98.8 1.9E-08 6.4E-13 87.4 9.6 78 55-148 54-132 (132)
84 2plt_A Plastocyanin; electron 98.8 6.6E-09 2.3E-13 85.4 6.0 80 60-148 17-98 (98)
85 1bxv_A Plastocyanin; copper pr 98.7 3.4E-08 1.2E-12 79.8 8.1 76 58-148 16-91 (91)
86 1qhq_A Protein (auracyanin); e 98.7 2.8E-08 9.4E-13 87.4 8.1 96 415-515 34-139 (140)
87 1pcs_A Plastocyanin; electron 98.7 1.1E-08 3.6E-13 84.2 4.6 81 60-148 18-98 (98)
88 1pcs_A Plastocyanin; electron 98.6 3E-08 1E-12 81.4 6.0 79 415-515 20-98 (98)
89 1b3i_A PETE protein, protein ( 98.6 8.7E-08 3E-12 78.4 8.1 77 60-148 18-97 (97)
90 3erx_A Pseudoazurin; copper pr 98.6 1.4E-07 4.7E-12 80.6 8.9 76 60-150 20-95 (123)
91 1kdj_A Plastocyanin; electron 98.6 1.2E-07 4.2E-12 78.3 7.9 77 60-148 16-102 (102)
92 2plt_A Plastocyanin; electron 98.6 1.4E-07 4.9E-12 77.2 8.2 80 415-515 19-98 (98)
93 1byp_A Protein (plastocyanin); 98.6 2.1E-07 7.2E-12 76.4 9.0 77 60-148 16-99 (99)
94 1bxv_A Plastocyanin; copper pr 98.6 1.4E-07 4.8E-12 76.1 7.8 72 415-515 20-91 (91)
95 1plc_A Plastocyanin; electron 98.6 2.4E-07 8.1E-12 76.1 9.0 77 60-148 16-99 (99)
96 3tu6_A Pseudoazurin (blue copp 98.5 1.5E-07 5.3E-12 80.7 7.3 76 60-150 22-97 (127)
97 3ef4_A Pseudoazurin, blue copp 98.5 2.5E-07 8.6E-12 78.9 8.4 76 60-150 21-96 (124)
98 1b3i_A PETE protein, protein ( 98.5 8E-08 2.7E-12 78.7 4.6 78 415-515 20-97 (97)
99 1iby_A Nitrosocyanin; RED copp 98.4 6E-07 2E-11 75.5 8.6 74 415-516 39-112 (112)
100 1byp_A Protein (plastocyanin); 98.4 3.9E-07 1.3E-11 74.8 5.6 81 415-514 18-98 (99)
101 4hci_A Cupredoxin 1; structura 98.3 1.5E-06 5.3E-11 71.4 8.6 72 415-515 29-100 (100)
102 1iuz_A Plastocyanin; electron 98.3 7.8E-07 2.7E-11 72.9 6.7 79 58-148 15-98 (98)
103 1id2_A Amicyanin; beta barrel, 98.3 4.9E-06 1.7E-10 69.1 10.7 77 56-148 29-106 (106)
104 1paz_A Pseudoazurin precursor; 98.3 2.4E-06 8.2E-11 72.9 8.9 76 60-150 20-95 (123)
105 1cuo_A Protein (azurin ISO-2); 98.3 1.7E-06 5.8E-11 74.4 7.8 91 58-149 15-129 (129)
106 1pmy_A Pseudoazurin; electron 98.2 2.8E-06 9.5E-11 72.6 8.0 76 60-150 20-95 (123)
107 1kdj_A Plastocyanin; electron 98.2 1.1E-06 3.8E-11 72.5 5.2 86 414-515 17-102 (102)
108 3sbq_A Nitrous-oxide reductase 98.1 5.2E-06 1.8E-10 87.1 9.6 91 49-149 546-637 (638)
109 3ay2_A Lipid modified azurin p 98.1 5E-06 1.7E-10 74.5 6.8 92 57-149 54-167 (167)
110 2ux6_A Pseudoazurin; type-1 co 98.1 9.7E-06 3.3E-10 69.1 7.9 74 60-150 20-93 (122)
111 1plc_A Plastocyanin; electron 98.0 2E-05 6.9E-10 64.4 8.6 82 414-514 17-98 (99)
112 2ccw_A Azurin II, AZN-2; elect 98.0 1.4E-05 4.9E-10 68.6 7.2 91 57-148 14-128 (129)
113 1nwp_A Azurin; electron transp 97.9 4.9E-05 1.7E-09 65.1 9.9 91 57-148 14-128 (128)
114 2iaa_C Azurin; quinoprotein, t 97.9 5.5E-05 1.9E-09 64.8 10.1 91 57-148 13-127 (128)
115 2ov0_A Amicyanin; beta-sandwic 97.9 2.9E-05 1E-09 64.2 7.4 71 415-514 34-104 (105)
116 2cal_A Rusticyanin; iron respi 97.9 2.6E-05 9E-10 69.3 7.3 83 414-514 61-153 (154)
117 1fwx_A Nitrous oxide reductase 97.8 5.3E-05 1.8E-09 81.2 9.7 74 415-517 514-593 (595)
118 3fsa_A Azurin; copper, cupredo 97.3 0.0015 5E-08 55.2 9.6 87 58-148 15-125 (125)
119 3ef4_A Pseudoazurin, blue copp 97.1 0.001 3.5E-08 56.4 6.8 75 415-518 23-97 (124)
120 1id2_A Amicyanin; beta barrel, 97.1 0.0014 4.8E-08 54.0 7.4 71 415-514 35-105 (106)
121 3tu6_A Pseudoazurin (blue copp 97.0 0.0009 3.1E-08 57.1 6.0 75 415-518 24-98 (127)
122 1iuz_A Plastocyanin; electron 97.0 0.0023 7.9E-08 51.8 8.3 80 414-514 18-97 (98)
123 3c75_A Amicyanin; copper prote 96.9 0.0021 7.1E-08 55.3 7.4 71 415-514 61-131 (132)
124 2cua_A Protein (CUA); CUA cent 96.8 0.008 2.7E-07 51.8 10.6 75 61-149 60-135 (135)
125 3erx_A Pseudoazurin; copper pr 96.8 0.003 1E-07 53.6 7.6 73 415-516 22-94 (123)
126 3s8f_B Cytochrome C oxidase su 96.5 0.019 6.6E-07 51.1 10.6 84 52-149 84-168 (168)
127 1paz_A Pseudoazurin precursor; 96.3 0.009 3.1E-07 50.6 7.4 74 415-517 22-95 (123)
128 3sbq_A Nitrous-oxide reductase 96.3 0.012 4E-07 62.1 9.5 76 414-516 558-637 (638)
129 1pmy_A Pseudoazurin; electron 96.1 0.01 3.4E-07 50.3 6.6 38 476-517 58-95 (123)
130 3ay2_A Lipid modified azurin p 95.5 0.028 9.4E-07 50.1 7.1 90 416-515 60-166 (167)
131 2ux6_A Pseudoazurin; type-1 co 95.2 0.047 1.6E-06 46.0 7.1 71 415-516 22-92 (122)
132 2cua_A Protein (CUA); CUA cent 94.8 0.1 3.5E-06 44.7 8.3 72 416-515 62-134 (135)
133 1cuo_A Protein (azurin ISO-2); 94.5 0.091 3.1E-06 44.7 7.1 94 414-515 18-128 (129)
134 2iaa_C Azurin; quinoprotein, t 94.2 0.15 5E-06 43.3 7.8 91 415-515 18-127 (128)
135 2ccw_A Azurin II, AZN-2; elect 93.4 0.26 9E-06 41.8 8.0 91 415-515 19-128 (129)
136 1nwp_A Azurin; electron transp 93.2 0.31 1.1E-05 41.2 8.1 92 415-514 19-127 (128)
137 3s8f_B Cytochrome C oxidase su 93.1 0.33 1.1E-05 43.1 8.5 73 416-516 95-168 (168)
138 3fsa_A Azurin; copper, cupredo 91.9 1.2 4.2E-05 37.3 9.9 93 414-514 18-124 (125)
139 3isy_A Bsupi, intracellular pr 85.3 6.9 0.00023 32.4 9.8 71 211-282 16-101 (120)
140 1cyx_A CYOA; electron transpor 75.9 2.4 8E-05 38.7 4.2 77 414-518 41-119 (205)
141 3hb3_B Cytochrome C oxidase su 72.2 3.7 0.00013 39.8 4.8 78 414-519 189-267 (298)
142 3isy_A Bsupi, intracellular pr 69.3 46 0.0016 27.3 12.0 74 48-132 21-100 (120)
143 2gsm_B Cytochrome C oxidase su 64.5 6.2 0.00021 37.5 4.6 78 414-519 171-249 (262)
144 1cyx_A CYOA; electron transpor 59.3 23 0.00079 32.1 7.1 74 61-148 41-115 (205)
145 2r39_A FIXG-related protein; s 55.1 31 0.0011 28.1 6.8 47 213-269 33-81 (118)
146 1v54_B Cytochrome C oxidase po 53.7 10 0.00035 35.2 3.9 79 413-519 139-218 (227)
147 2f1e_A Protein APAG; APAG prot 49.6 12 0.00043 31.2 3.4 64 72-149 34-105 (127)
148 1xvs_A Protein APAG; MCSG APC2 46.9 13 0.00043 31.1 3.0 64 72-149 33-104 (126)
149 1fft_B Ubiquinol oxidase; elec 46.1 11 0.00037 36.9 2.8 76 415-518 152-229 (315)
150 1xq4_A Protein APAG; all beta 44.0 17 0.00057 30.9 3.3 63 73-149 39-109 (139)
151 1xwv_A DER F II; beta sheets, 43.8 34 0.0012 28.4 5.4 62 60-121 24-93 (129)
152 2gsm_B Cytochrome C oxidase su 42.3 73 0.0025 30.0 8.0 75 61-149 171-246 (262)
153 3hb3_B Cytochrome C oxidase su 40.8 84 0.0029 30.2 8.2 76 61-150 189-265 (298)
154 1tza_A APAG protein, SOR45; st 40.4 15 0.0005 31.1 2.4 63 73-149 34-104 (134)
155 1nep_A EPV20, BNPC2, epididyma 39.8 38 0.0013 28.1 5.0 62 60-121 25-95 (130)
156 2xzz_A Protein-glutamine gamma 38.9 30 0.001 27.5 4.0 53 69-127 22-79 (102)
157 1x9u_A Umecyanin; cupredoxin, 32.8 44 0.0015 27.3 4.1 35 116-151 72-107 (116)
158 3rfr_A PMOB; membrane, oxidore 31.6 1.5E+02 0.0052 29.4 8.3 68 47-122 284-368 (419)
159 1yew_A Particulate methane mon 27.2 1.3E+02 0.0045 29.6 7.0 68 48-121 251-335 (382)
160 2r5o_A Putative ATP binding co 25.4 1.2E+02 0.004 26.7 6.1 85 193-282 52-145 (188)
161 2h7w_A Chagasin; beta-strands, 23.7 3E+02 0.01 22.7 7.9 65 60-127 32-104 (131)
162 2wtp_A ORF131 protein, CZCE; m 22.8 26 0.00089 29.2 1.0 23 206-228 72-94 (131)
163 1x9u_A Umecyanin; cupredoxin, 22.6 72 0.0025 25.9 3.7 34 485-518 73-107 (116)
164 1v54_B Cytochrome C oxidase po 22.2 2E+02 0.0068 26.3 7.1 76 60-149 139-215 (227)
165 2c34_A ICP, inhibitor of cyste 21.0 2.8E+02 0.0096 22.2 7.0 67 60-127 14-89 (116)
166 2p9r_A Alpha-2-M, alpha-2-macr 20.5 79 0.0027 24.6 3.5 68 209-282 13-84 (102)
167 3idu_A Uncharacterized protein 20.0 3.6E+02 0.012 22.0 10.1 65 208-281 28-95 (127)
No 1
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=100.00 E-value=1.4e-101 Score=840.51 Aligned_cols=492 Identities=29% Similarity=0.527 Sum_probs=396.0
Q ss_pred CeEEEEEEEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCC-CCceEeeCCccCCCCCCCCCCCcc-CC
Q 009054 29 PYRFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLP-EPFLISWNGVQQRRNSYEDGVYGT-TC 106 (545)
Q Consensus 29 ~~~~~~l~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~-q~ 106 (545)
++++|+|+|++..+.+||.++.+|+|||++|||+|||++||+|+|+|+|+|+ ++++|||||+++.+++++||++++ ||
T Consensus 2 ~~~~y~~~v~~~~~~~dg~~~~~~~~Ng~~PGP~I~~~~GD~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~~vtq~ 81 (552)
T 1aoz_A 2 QIRHYKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQC 81 (552)
T ss_dssp CEEEEEEEEEEEEECTTSSCEEEEEETTBSSCCCEEEETTCEEEEEEEECCSSCCBCEEEETCCCTTCGGGSCCBTTTBC
T ss_pred eEEEEEEEEEEEEEcCCCceEEEEEECCccCCCcEEEeCCCEEEEEEEeCCCCCCeeEEeCCCccCCCcccCCCcccccC
Confidence 6899999999999999999999999999999999999999999999999998 999999999999998899999999 99
Q ss_pred cCCCCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchhhHHHhhccC
Q 009054 107 PIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHNKLKSVLDRG 186 (545)
Q Consensus 107 ~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~ 186 (545)
+|+||++|+|+|++ +++||||||||...|+++||+|+|||++++....+++ .|+|++|+++||+++....+...+...
T Consensus 82 ~I~PG~s~tY~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~~-~d~e~~l~l~Dw~~~~~~~~~~~~~~~ 159 (552)
T 1aoz_A 82 AINPGETFFYNFTV-DNPGTFFYHGHLGMQRSAGLYGSLIVDPPQGKKEPFH-YDGEINLLLSDWWHQSIHKQEVGLSSK 159 (552)
T ss_dssp CBCTTCEEEEEEEC-CSCEEEEEEECSTTTGGGTCEEEEEEECCTTCCCSSC-CSEEEEEEEEEECSSCHHHHHHHTTSS
T ss_pred CcCCCCeEEEEEEC-CCCEEEEEEECchhHHhccCeeeEEEeCCcccCCCCC-CCccceEEeecccCCCHHHHHhhhhcc
Confidence 99999999999997 8899999999999999999999999999865444553 368999999999998765554333221
Q ss_pred --CCCCCCCeEEEcccCCC----C--------------------ceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEE
Q 009054 187 --HRLPSPDGILINGHGSN----G--------------------ASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLV 240 (545)
Q Consensus 187 --~~~~~~~~~liNG~~~~----~--------------------~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~vi 240 (545)
.....++.++|||+... . +.++|++|++|||||||+|..+.+.|+|+||+|+||
T Consensus 160 ~~~~~~~~~~~liNG~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~vi 239 (552)
T 1aoz_A 160 PIRWIGEPQTILLNGRGQFDCSIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQLLVV 239 (552)
T ss_dssp SCCCCCSCSEEEETTBCCSSSBTTGGGCTTSCBCCCCSCSTTSCCCEEECTTCEEEEEEEECCSSCEEEEEETTCCEEEE
T ss_pred cccCCCCCCeEEECCccccCcccCcccccccccccccCCCCCCceEEEEcCCCEEEEEEEcccccceEEEEEcCcEEEEE
Confidence 12235789999999862 0 179999999999999999999999999999999999
Q ss_pred eecCccceeeEEeEEEEccCceEEEEEEe-CCCCcceEEEEeeccc-CCccceEEEEEecCCCCC--CCCCCCCCCC-cc
Q 009054 241 EVEGTHTIQTTYSSLDVHVGQSYSVLVTM-DQPPQDFYIAVSTRFT-NKVLTSTGTLHYSNSAHP--VSGPVPGGPT-TQ 315 (545)
Q Consensus 241 a~DG~~~~p~~~~~v~l~pgeR~dv~v~~-~~~~g~y~~~~~~~~~-~~~~~~~ail~y~~~~~~--~~~~~p~~p~-~~ 315 (545)
|+||.+++|+.++++.|+|||||||+|++ ++.+|+|||++....+ .......|+|+|.+.... +..+.|..|. .+
T Consensus 240 ~~DG~~~~P~~~~~l~i~pgqR~dvlv~~~~~~~g~y~i~~~~~~~~~~~~~~~ail~y~~~~~~~~p~~~~p~~p~~~~ 319 (552)
T 1aoz_A 240 EADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTRARHPNTPPGLTLLNYLPNSVSKLPTSPPPQTPAWDD 319 (552)
T ss_dssp EETTEEEEEEEESCEEECTTCEEEEEEECCSCTTCCEEEEEEEESSCCCSCCEEEEEEETTSCTTSCCSSCCCCCCCTTC
T ss_pred EECCcccCceEEeEEEEcCCcEEEEEEEcCCCCCCCEEEEEEcccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCcccc
Confidence 99999999999999999999999999999 4568999999987643 234568899999876531 1112222221 11
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhccccccccc
Q 009054 316 IDWSLNQARSIRTNLTASGPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVF 395 (545)
Q Consensus 316 ~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~ 395 (545)
.... ....++ .+....+.+.+ ...++++.+.......++...|+|||++|..++.|+|.+.+.+++|.|
T Consensus 320 ~~~~--~~~~l~-~l~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~w~iNg~s~~~p~~P~L~~~~~~~~g~~ 388 (552)
T 1aoz_A 320 FDRS--KNFTYR-ITAAMGSPKPP--------VKFNRRIFLLNTQNVINGYVKWAINDVSLALPPTPYLGAMKYNLLHAF 388 (552)
T ss_dssp HHHH--HHHHTT-CCBCTTCCCCC--------SSCSEEEEEEEEEEEETTEEEEEETTEEECCCSSCHHHHHHTTCTTSS
T ss_pred cccc--cccccc-ccccCCCCCCC--------CCCcEEEEEEEeeccCCCeEEEEECCCccCCCCCCHHHHHhhcCcccc
Confidence 1100 000011 11110011111 235777777654433356678999999999999999888776666766
Q ss_pred ccCCCCC----------CCCCCCccccceEEecCCCcEEEEEEEcCC------CCCCceeecCCceEEEeeccCcCCCCC
Q 009054 396 RVGSIQD----------QPTGGNIYLDTSVMGADFRGFIEIVFQNHE------NIVQSWHIDGYNFWVVGMNGGVWTPAS 459 (545)
Q Consensus 396 ~~~~~~~----------~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~------~~~HP~HlHG~~F~Vl~~g~g~~~~~~ 459 (545)
+.+.... .+.+...+.++.++.++.|++|+|+|+|.+ .+.||||||||+||||++|.|.|++..
T Consensus 389 ~~~~p~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~g~~v~ivi~N~~~~~~~~~~~HP~HLHGh~F~Vl~~g~G~~~~~~ 468 (552)
T 1aoz_A 389 DQNPPPEVFPEDYDIDTPPTNEKTRIGNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSAEE 468 (552)
T ss_dssp CCSCCCSCCCTTCCTTSCCCCTTCEEECCCEEECTTCEEEEEEEECCCSSTTCCCCEEEEETTCCEEEEEEEESSCCGGG
T ss_pred ccCCCccccccccccccccccccccccceEEEecCCCEEEEEEeCCcccccccCCCCCEEEcCCceEEEecccCccCccc
Confidence 5432211 011223456778899999999999999987 356999999999999999988888744
Q ss_pred CCCCCCCCCCccceEEeCCCCEEEEEEEeCCccceeeeecchhhhhcceEEEEEEeCCCccccccCCCCCccccccccc
Q 009054 460 RNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMWNVRSEFWARQYLGQQFYLRVYSPVESIRDEYPIPKNALLCGRAK 538 (545)
Q Consensus 460 ~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~ 538 (545)
...+|+.+|+|||||.|++++|++|||+|||||.|+|||||++|++.|||++|.|... ++.++|++++.|+.++
T Consensus 469 ~~~~n~~~p~~RDTv~vpp~g~v~Irf~aDNPG~W~~HCHi~~H~~~GM~~~~~~~~~-----~~~~~P~~~~~C~~~~ 542 (552)
T 1aoz_A 469 ESSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVE-----KVGRIPTKALACGGTA 542 (552)
T ss_dssp GGGSCCSSCCEESEEEECTTEEEEEEEECCSCEEEEEEESSHHHHHTTCEEEEEECGG-----GCCCCCHHHHSSHHHH
T ss_pred ccccccCCCCccCeEEeCCCceEEEEEEcCCCeEEEEEeeehhHhhCCCeEEEEeCch-----hhccCCcchhhhhccC
Confidence 4568899999999999999999999999999999999999999999999999987532 3667899999999876
No 2
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=100.00 E-value=5.9e-97 Score=797.91 Aligned_cols=470 Identities=23% Similarity=0.359 Sum_probs=374.4
Q ss_pred CCCeEEEEEEEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCC-CCceEeeCCccCCCCCCCCCCCcc-
Q 009054 27 ESPYRFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLP-EPFLISWNGVQQRRNSYEDGVYGT- 104 (545)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~- 104 (545)
.+.+++|+|+|+++++.+||+++.+|+|||++|||+||+++||+|+|+|+|+|+ ++++|||||++|.+++++||+|++
T Consensus 64 ~~~~~~~~l~v~~~~~~pdG~~~~~~~~NG~~PGP~I~~~~GD~v~V~v~N~l~~~~tsIHwHGl~~~~t~~~DGvp~vT 143 (580)
T 3sqr_A 64 TGVTREYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVT 143 (580)
T ss_dssp CCCEEEEEEEEEEEEECSSSBCEEEEEETTBSSCCCEEEETTCEEEEEEEECCSSCCBCEEETTCCCTTCGGGSCCBTTT
T ss_pred CceEEEEEEEEEEEEecCCCeEEEEEEECCccCCceEEEeCCCEEEEEEEECCCCCcceEEecccccCCCccccCCCccc
Confidence 356899999999999999999999999999999999999999999999999998 899999999999999999999999
Q ss_pred CCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCCCCCCCCCCCCcc-eEEEeeeeecchhhHHHhh
Q 009054 105 TCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLIPVPFPEPAGDF-TVLIGDWYKANHNKLKSVL 183 (545)
Q Consensus 105 q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~-~l~~~d~~~~~~~~~~~~~ 183 (545)
||+|+||++|+|+|++ .++||||||||...|+.+||+|+|||++++. .+| |.|. +|+|+||+++...++....
T Consensus 144 q~pI~PG~sftY~f~~-~q~GT~WYHsH~~~q~~~GL~G~lIV~~p~~--~~y---D~d~~~l~l~Dw~~~~~~~~~~~~ 217 (580)
T 3sqr_A 144 QCPIAPGDTLTYKFQV-TQYGTTWYHSHFSLQYGDGLFGPLIINGPAT--ADY---DEDVGVIFLQDWAHESVFEIWDTA 217 (580)
T ss_dssp BCCBCTTCEEEEEEEC-CCCEEEEEEECSTTGGGGTCEEEEEEECCCS--SCC---SEEEEEEEEEEECSSCHHHHHHHH
T ss_pred cCCCCCCCeEEEEEEC-CCCcceEEeecccccccCcCEEEEEeeCccc--CCC---CccceEEEEEEEecCCHHHHHHHH
Confidence 9999999999999997 6899999999999999999999999998653 245 7787 9999999999877665443
Q ss_pred ccCCCCCCCCeEEEcccCCC---------------CceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccce
Q 009054 184 DRGHRLPSPDGILINGHGSN---------------GASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTI 248 (545)
Q Consensus 184 ~~~~~~~~~~~~liNG~~~~---------------~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~ 248 (545)
..+ ..+.++.+||||+... .+.++|++|++|||||||+|....+.|+|+||+|+|||+||.+++
T Consensus 218 ~~~-~~~~~d~~liNG~~~~~c~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~i~gh~~~VIa~DG~~v~ 296 (580)
T 3sqr_A 218 RLG-APPALENTLMNGTNTFDCSASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIV 296 (580)
T ss_dssp TTS-CCCCBSEEEETTBCCCCCTTCCCTTBCCCCCCCEEECCTTCEEEEEEEECCSSCCEEEEETTCCEEEEEETTEEEE
T ss_pred hcc-CCCCCceEEECCcccCCCccccccccccCCCceeEEEcCCCEEEEEEEeccCCceeeEEeCCceEEEEEeCCccCC
Confidence 332 2457899999999752 378999999999999999999999999999999999999999999
Q ss_pred eeEEeEEEEccCceEEEEEEeCCCCcceEEEEeecccC----CccceEEEEEecCCCCCCCCCCCCCCCccccccccccc
Q 009054 249 QTTYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTRFTN----KVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQAR 324 (545)
Q Consensus 249 p~~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~~~~----~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~ 324 (545)
|+.+++|.|+|||||||+|++++.+|+|||++.....+ ......|||+|.++... .|..+..... ..+.
T Consensus 297 P~~~~~l~i~pGqRydVlv~a~~~~g~Y~i~a~~~~~~~~~~~~~~~~aiL~Y~~~~~~----~P~~~~~~~~---~~~~ 369 (580)
T 3sqr_A 297 PYTTDTLLIGIGQRYDVIVEANAAADNYWIRGNWGTTCSTNNEAANATGILRYDSSSIA----NPTSVGTTPR---GTCE 369 (580)
T ss_dssp EEEESSEEECTTCEEEEEEECCSCSSEEEEECCCCTTTSCBTTGGGCEEEEESSTTCCC----CCCCCCCCCC---CCSC
T ss_pred ceEeeEEEEccceEEEEEEEeCCCCCeEEEEEecccccCccCCCCceEEEEEECCCCCC----CCCCCCCCcc---chhh
Confidence 99999999999999999999998889999999765322 23467999999875421 1111100000 0111
Q ss_pred ccc-cCCCCCCCCCCCCCCCCccccccceEEEeeccccccCCeEEEEEcceeec-CCCCchhhhcccccccccccCCCCC
Q 009054 325 SIR-TNLTASGPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFI-PADTPLKLADYFKIGGVFRVGSIQD 402 (545)
Q Consensus 325 ~l~-~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~-~~~~P~l~~~~~~~~~~~~~~~~~~ 402 (545)
+.. ..|.+..+.+.|. ..+.++.+... .++...|+|||.+|. +++.|+|++.+.+. ..
T Consensus 370 ~~~~~~L~P~~~~~~~~--------~~~~~~~l~~~---~~~~~~w~iN~~s~~~~~~~P~L~~~~~g~---------~~ 429 (580)
T 3sqr_A 370 DEPVASLVPHLALDVGG--------YSLVDEQVSSA---FTNYFTWTINSSSLLLDWSSPTTLKIFNNE---------TI 429 (580)
T ss_dssp CSCGGGCCBSSCCBCCS--------EEEEEEEEEEE---ESSSEEEEETTBCCCCCTTSCHHHHHHTTC---------CC
T ss_pred cccccccccCCCCCCCC--------ccceEEEEEec---cCCceeEEECCEecccCCCCCchhhhhcCC---------cc
Confidence 110 1233222222111 12333333331 246678999999996 46889876543211 01
Q ss_pred CCCCCCccccceEEecC----CCcEEEEEEEcCC--CCCCceeecCCceEEEeeccCcCCCCC-CCCCCCCCCCccceEE
Q 009054 403 QPTGGNIYLDTSVMGAD----FRGFIEIVFQNHE--NIVQSWHIDGYNFWVVGMNGGVWTPAS-RNEYNLRDAVSRCTTQ 475 (545)
Q Consensus 403 ~p~~~~~~~~~~~~~~~----~g~~v~~~i~N~~--~~~HP~HlHG~~F~Vl~~g~g~~~~~~-~~~~~~~~p~~rDTv~ 475 (545)
.| ...+++.++ .|++|||+|+|.+ .+.||||||||+||||++|.|.|++.. ...+|+.||++|||+.
T Consensus 430 ~~------~~~~~~~~~~~~~~~~~VeiVi~n~~~~~~~HP~HLHGh~F~vv~~g~G~f~~~~~~~~~nl~nP~~rDTv~ 503 (580)
T 3sqr_A 430 FP------TEYNVVALEQTNANEEWVVYVIEDLTGFGIWHPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAA 503 (580)
T ss_dssp CC------GGGCEEEECC----CCEEEEEEEECSSSCCCEEEEESSCCEEEEEEESSCCCTTTSGGGCCCBSCCEESEEE
T ss_pred CC------CCcceeecccccCCCcEEEEEEeCCCccccceeeEecCceEEEEecCCCccCccccccccccCCCceeeEEE
Confidence 11 233455554 6999999999988 789999999999999999999998653 3568999999999999
Q ss_pred eCCCCEEEEEEEeCCccceeeeecchhhhhcceEEEEEEeCCCccccccCCCCCcc-ccccccc
Q 009054 476 VYPKSWTAIYVALDNVGMWNVRSEFWARQYLGQQFYLRVYSPVESIRDEYPIPKNA-LLCGRAK 538 (545)
Q Consensus 476 vp~~~~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~-~~c~~~~ 538 (545)
|++++|++|||++||||.|+|||||++|++.||+.+|.+...+ +.+..++|+++ ..|..+.
T Consensus 504 v~~~g~~~irf~adNPG~W~~HCHi~~H~~~Gm~~~~~e~~~~--i~~~~~~~~~~~~~C~~~~ 565 (580)
T 3sqr_A 504 LPGNGYLAIAFKLDNPGSWLLHCHIAWHASEGLAMQFVESQSS--IAVKMTDTAIFEDTCANWN 565 (580)
T ss_dssp ECTTSEEEEEEESCSCEEEEEEECSHHHHHTTCEEEEEESGGG--CCCCHHHHHHHHHHHHHHH
T ss_pred eCCCceEEEEEEcCCCeeeEEEECcHHHhhCCCcEEEEECHHH--HhhccCCcHHHHHhhHHHh
Confidence 9999999999999999999999999999999999999874432 33333356664 6897664
No 3
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-96 Score=794.94 Aligned_cols=478 Identities=22% Similarity=0.302 Sum_probs=373.7
Q ss_pred CeEEEEEEEEEEEecCCC-eeEEEEEEcCcccCceEEEecCCEEEEEEEeCCC-CCceEeeCCccCCCCCCCCCCCcc-C
Q 009054 29 PYRFFTWNVTYGDIYPLG-VRQQGILINGQFPGPDIYSVTNDNLIINVHNSLP-EPFLISWNGVQQRRNSYEDGVYGT-T 105 (545)
Q Consensus 29 ~~~~~~l~~~~~~~~~dG-~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~-q 105 (545)
++++|+|+|++..+.+|| .++.+|+|||++|||+||+++||+|+|+|+|+|+ ++|+|||||+++.+++++||+|++ |
T Consensus 1 ~~~~~~~~v~~~~~~pdG~~~~~~~~~Ng~~PGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~vtq 80 (534)
T 1zpu_A 1 ETHTFNWTTGWDYRNVDGLKSRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQ 80 (534)
T ss_dssp CEEEEEEEEEEEEECSSSSCCEEEEEETTBSSCCCEEEETTCEEEEEEECCCSSCCBCCEEETCCCTTCGGGSCCBTTTB
T ss_pred CEEEEEEEEEEEEecCCCCceEEEEEECCccCCccEEEECCCEEEEEEEeCCCCCCeeEEcCCcccCCCCcccCCCcccc
Confidence 478999999999999999 8999999999999999999999999999999998 999999999999988999999999 9
Q ss_pred CcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchhhHHHh-hc
Q 009054 106 CPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHNKLKSV-LD 184 (545)
Q Consensus 106 ~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~-~~ 184 (545)
|+|+||++|+|+|++.+++||||||||.+.|+++||+|+|||++++. |+ .+|+|++|+++||+++...++... +.
T Consensus 81 ~pI~PG~~~~Y~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~~---p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~ 156 (534)
T 1zpu_A 81 CPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIKDDSF---PY-DYDEELSLSLSEWYHDLVTDLTKSFMS 156 (534)
T ss_dssp CCBCTTCEEEEEEECSSCCEEEEEECCSSSGGGGTCEEEEEEECTTC---CS-CCSEEEEEEEEEECSSCHHHHHHHHSS
T ss_pred CCcCCCCeEEEEEEeCccceeEEEEEcCcccccCcceeeEEeCCCCC---CC-CCcceEEEEeeccccCCHHHHHHHHhc
Confidence 99999999999999866899999999999999999999999999742 33 348899999999999987766432 21
Q ss_pred ---cCCCCCCCCeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeEEeEEEEccCc
Q 009054 185 ---RGHRLPSPDGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQ 261 (545)
Q Consensus 185 ---~~~~~~~~~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pge 261 (545)
.....+.++.+||||+.. +.++|++||+|||||||+|..+.+.|+|+||+|+|||+||++++|+.+++|.|+|||
T Consensus 157 ~~~~~g~~~~~d~~liNG~~~--~~~~v~~g~~~RlRliNa~~~~~~~~~i~gh~~~vi~~DG~~~~P~~~~~l~l~~gq 234 (534)
T 1zpu_A 157 VYNPTGAEPIPQNLIVNNTMN--LTWEVQPDTTYLLRIVNVGGFVSQYFWIEDHEMTVVEIDGITTEKNVTDMLYITVAQ 234 (534)
T ss_dssp TTCTTCCCCCCSEEEETTBSS--CEEECCSSCEEEEEEEECCSSCCEEEEETTBCEEEEEETTEEEEEEEESCEEECTTC
T ss_pred cccCCCCCCCCceEEECCCCc--eEEEEECCCEEEEEEEeccCCceEEEEEcCCeeEEEeccCcCccccEeceEEECccc
Confidence 122345789999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCC-CcceEEEEeeccc-------CCccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCC
Q 009054 262 SYSVLVTMDQP-PQDFYIAVSTRFT-------NKVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTAS 333 (545)
Q Consensus 262 R~dv~v~~~~~-~g~y~~~~~~~~~-------~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~ 333 (545)
||||+|++++. .++|||++..... .......++|+|.++...+ .+. ........ ..+. .+.+.
T Consensus 235 R~dvlv~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~p---~~~-~~~~~~~~---~~~~--~l~p~ 305 (534)
T 1zpu_A 235 RYTVLVHTKNDTDKNFAIMQKFDDTMLDVIPSDLQLNATSYMVYNKTAALP---TQN-YVDSIDNF---LDDF--YLQPY 305 (534)
T ss_dssp EEEEEEECCSCSSCCEEEEEEECGGGSSSCCTTCCCEEEEEEESCTTSCBC---CCC-CCSCSSCS---CCGG--GCCBS
T ss_pred eEEEEEEcCCCCCCcEEEEEeccccccccCCCCCCcceEEEEEeCCCCCCC---CCC-cccccccc---cccc--cceeC
Confidence 99999999864 4799999875422 1134567999998754211 110 00000000 1110 11111
Q ss_pred CCCCCCCCCCCccccccceEEEeeccccc-cCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCcccc
Q 009054 334 GPRPNPQGSYHYGLINISRTIKLESSAGQ-VNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLD 412 (545)
Q Consensus 334 ~~~p~p~~~~~~~~~~~~~~~~l~~~~~~-~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 412 (545)
...+.+ ...++++.+...+.. .++...|+|||++|..++.|+|++.+.. +.+. .++. ....+
T Consensus 306 ~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~iNg~s~~~~~~P~L~~~~~~--~~~~-----~~~~--~~~~~ 368 (534)
T 1zpu_A 306 EKEAIY--------GEPDHVITVDVVMDNLKNGVNYAFFNNITYTAPKVPTLMTVLSS--GDQA-----NNSE--IYGSN 368 (534)
T ss_dssp SCCCCC--------CSCSEEEEEEEEEEECTTSCEEEEETTBCCCCCSSCHHHHHTTS--GGGT-----TCGG--GGCSS
T ss_pred CCCCCC--------CCCCeEEEEEEEeeccCCceeEEEECCCcccCCCCCceeeeccc--Cccc-----CCCc--ccCCC
Confidence 111111 135677766554321 2456689999999999999988755431 1111 1111 01124
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccC----------cCCCCCCCCCCCCCCCccceEEeCCCCEE
Q 009054 413 TSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGG----------VWTPASRNEYNLRDAVSRCTTQVYPKSWT 482 (545)
Q Consensus 413 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g----------~~~~~~~~~~~~~~p~~rDTv~vp~~~~v 482 (545)
+.++.++.|++|+|+|+|.+.+.||||||||+||||+++.+ .|++.... ....+|+|||||.|++++|+
T Consensus 369 ~~~~~~~~g~~v~ivi~N~~~~~HP~HLHGh~F~Vl~~~~~~~~~~~G~p~~~~~~~~~-~~~~~p~~RDTv~V~pgg~v 447 (534)
T 1zpu_A 369 THTFILEKDEIVEIVLNNQDTGTHPFHLHGHAFQTIQRDRTYDDALGEVPHSFDPDNHP-AFPEYPMRRDTLYVRPQSNF 447 (534)
T ss_dssp SCEEEECTTCEEEEEEEECSSSCEEEEETTCCEEEEEECCCCCGGGTCCCCCCBTTBCC-CCCSSCEEESEEEECTTCEE
T ss_pred ceEEEeCCCCEEEEEEeCCCCCCCCeEecCCceEEEeecCCccccccCcccccCccccc-cccCCCCeeeEEEeCCCCEE
Confidence 67788999999999999999999999999999999999864 34433211 22468999999999999999
Q ss_pred EEEEEeCCccceeeeecchhhhhcceEEEEEEeCCCcccccc--CCCCCcccccccccCCC
Q 009054 483 AIYVALDNVGMWNVRSEFWARQYLGQQFYLRVYSPVESIRDE--YPIPKNALLCGRAKGKH 541 (545)
Q Consensus 483 ~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~--~~~p~~~~~c~~~~~~~ 541 (545)
+|||++||||.|+|||||++|++.|||..|.|...+ +.+. .++|++...|+...+++
T Consensus 448 ~IrF~aDNPG~W~~HCHi~~H~~~GM~~~~~~~~~~--~~~~~~~~~p~~~~~~C~~~~~~ 506 (534)
T 1zpu_A 448 VIRFKADNPGVWFFHCHIEWHLLQGLGLVLVEDPFG--IQDAHSQQLSENHLEVCQSCSVA 506 (534)
T ss_dssp EEEEECCSCEEEEEEECCHHHHHTTCEEEEEECHHH--HHHCGGGSCCHHHHHHHHHTTCC
T ss_pred EEEEEeCCCeeEEEEeCchhHhhcCCeEEEEECccc--cccccccCCChhHhhhhhccCCC
Confidence 999999999999999999999999999999875432 3333 56676654333334443
No 4
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=100.00 E-value=2.9e-96 Score=792.29 Aligned_cols=476 Identities=24% Similarity=0.335 Sum_probs=369.9
Q ss_pred cCCCeEEEEEEEEEEEecCCCe-eEEEEEEcCcccCceEEEecCCEEEEEEEeCCC-----CCceEeeCCccCCCCCCCC
Q 009054 26 AESPYRFFTWNVTYGDIYPLGV-RQQGILINGQFPGPDIYSVTNDNLIINVHNSLP-----EPFLISWNGVQQRRNSYED 99 (545)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~dG~-~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~-----~~~~iH~HG~~~~~~~~~D 99 (545)
.++.+.+|+|++++..+.+||+ ++.+|+|||++|||+||+++||+|+|+|+|+|+ ++|+|||||+++.+++++|
T Consensus 19 ~~~~~~~~~l~i~~~~~~~dg~~~~~~~~~NG~~PGP~i~~~~Gd~v~v~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~D 98 (521)
T 1v10_A 19 SLAATVALDLHILNANLDPDGTGARSAVTAEGTTIAPLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMD 98 (521)
T ss_dssp ---CCSEEEEEEEEEEECTTSSCCEEEEEESSSSSCCCEEEETTCEEEEEEEECCCCTTSCCCBCEEEETCCCTTCGGGS
T ss_pred hcccCceEEEEEEEEEEcCCCcceEEEEEECCccCCCcEEEeCCCEEEEEEEECCCCccCCCCceEecCCeeccCCCccC
Confidence 4456778999999999999999 999999999999999999999999999999998 9999999999998889999
Q ss_pred CCCcc-CCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCCC-CCCCCCCCCcceEEEeeeeecchh
Q 009054 100 GVYGT-TCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLI-PVPFPEPAGDFTVLIGDWYKANHN 177 (545)
Q Consensus 100 Gv~~~-q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~-~~~~~~~~~e~~l~~~d~~~~~~~ 177 (545)
|++++ ||+|+||++|+|+|++++++||||||||.+.|+++||+|+|||+++++. ..+|+..++|++|+++||+++...
T Consensus 99 Gv~~vtq~~I~PG~s~~Y~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~~e~~l~l~D~~~~~~~ 178 (521)
T 1v10_A 99 GPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPNDPHLSLYDVDDASTVITIADWYHSLST 178 (521)
T ss_dssp CCBTTTBCCBCTTEEEEEEEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTTCTTGGGCSBCSGGGEEEEEEECSSCCC
T ss_pred CCcceeeCCcCCCCeEEEEEecCCCCccEEEEeccCCchhcCceEEEEEcCCcccccccCCCCCceeEEEEcccccCCHH
Confidence 99999 9999999999999998789999999999999999999999999986422 223433347999999999998776
Q ss_pred hHHHhhccCCCCCCCCeEEEcccCCC--------CceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCcccee
Q 009054 178 KLKSVLDRGHRLPSPDGILINGHGSN--------GASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQ 249 (545)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~liNG~~~~--------~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p 249 (545)
++.. ..+...+.++.++|||+.+. .+.++|++|++|||||||+|..+.+.|+|+||+|+||++||.+++|
T Consensus 179 ~~~~--~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~vi~~DG~~~~p 256 (521)
T 1v10_A 179 VLFP--NPNKAPPAPDTTLINGLGRNSANPSAGQLAVVSVQSGKRYRFRIVSTSCFPNYAFSIDGHRMTVIEVDGVSHQP 256 (521)
T ss_dssp ---------CCCSCCSEEEETTBCCCSSCGGGSCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEEEEETTEEEEE
T ss_pred HHhh--ccCCCCCCCCEEEECCcccCCCCCCCCCceEEEECCCCEEEEEEEecCCcccEEEEECCCeEEEEecCCccccc
Confidence 6542 12233456899999999862 2789999999999999999999999999999999999999999999
Q ss_pred eEEeEEEEccCceEEEEEEeCCCCcceEEEEeecccCC---ccceEEEEEecCCCCCCCCCCCCCCCccccccccccccc
Q 009054 250 TTYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTRFTNK---VLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSI 326 (545)
Q Consensus 250 ~~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~~~~~---~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l 326 (545)
+.++++.|+|||||||+|++++.+|+|+|++....... .....++|+|.+..... |..+.. +.....+
T Consensus 257 ~~~~~l~l~pgqR~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~ail~y~~~~~~~----p~~~~~----~~~~~~~- 327 (521)
T 1v10_A 257 LTVDSLTIFAGQRYSVVVEANQAVGNYWIRANPSNGRNGFTGGINSAIFRYQGAAVAE----PTTSQN----SGTALNE- 327 (521)
T ss_dssp EEESBEEECTTCEEEEEEECCSCSSEEEEEEEESSSSCSCGGGTTEEEEEETTCCSCC----CCCCCC----CSCBCCG-
T ss_pred eeeeeEEEcccceEEEEEEcCCCCCceeeeeccccccccCCCCceeEEEEECCCCCCC----CCCCCC----cccccch-
Confidence 99999999999999999999977899999998653211 12246999998765321 111100 0000000
Q ss_pred ccCCCCCCCCCCCCCCCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCC
Q 009054 327 RTNLTASGPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTG 406 (545)
Q Consensus 327 ~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~ 406 (545)
..+.+....+.|.... ....++++.+.... .+....|+|||++|..+..|+|++.+. +.+...
T Consensus 328 -~~l~p~~~~~~p~~~~---~~~~~~~~~l~~~~--~~~~~~~~iNg~~~~~~~~P~l~~~~~---g~~~~~-------- 390 (521)
T 1v10_A 328 -ANLIPLINPGAPGNPV---PGGADINLNLRIGR--NATTADFTINGAPFIPPTVPVLLQILS---GVTNPN-------- 390 (521)
T ss_dssp -GGCCBSSCCCCSSCSS---TTCSSEEEECCEEC--CSSSSCCEESSCCCCCCSSCHHHHHHH---TCCCGG--------
T ss_pred -hhcccCCcccCCCccc---CCcceEEEEEEEec--CCceeEEEECCCcccCCCCchhhhhhc---CCcccc--------
Confidence 1122221111121100 01244555554321 112236999999999888888765432 111100
Q ss_pred CCccccceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEe-CCCCEEEEE
Q 009054 407 GNIYLDTSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQV-YPKSWTAIY 485 (545)
Q Consensus 407 ~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v-p~~~~v~ir 485 (545)
+.+.++.++.++.|++|||+++| .+.||||||||+||||+++++. .+|+.+|.|||||.| ++++|++||
T Consensus 391 -~~~~~~~~~~v~~g~~vei~l~N--~~~HP~HLHGh~F~Vl~~~~~~-------~~n~~~p~~rDTV~V~p~gg~v~Ir 460 (521)
T 1v10_A 391 -DLLPGGAVISLPANQVIEISIPG--GGNHPFHLHGHNFDVVRTPGSS-------VYNYVNPVRRDVVSIGGGGDNVTFR 460 (521)
T ss_dssp -GSSSTTTEEEECTTCEEEEEEEC--CBSCEEEESSCCEEEEECTTCS-------CCCCSSCCEESEEECCBSSCEEEEE
T ss_pred -cCCCCceEEEecCCCEEEEEEcC--CCCCCEEEccceEEEEecCCCC-------ccccCCCCeeeeEEeCCCCcEEEEE
Confidence 11235678899999999999999 7899999999999999997652 267889999999999 899999999
Q ss_pred EEeCCccceeeeecchhhhhcceEEEEEEeCCCccccccCCCCC-cccccccccCCC
Q 009054 486 VALDNVGMWNVRSEFWARQYLGQQFYLRVYSPVESIRDEYPIPK-NALLCGRAKGKH 541 (545)
Q Consensus 486 f~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~-~~~~c~~~~~~~ 541 (545)
|++||||.|||||||++|++.|||..|.|...+ +.+..++|+ +.+.|..+....
T Consensus 461 f~aDNPG~W~~HCHi~~H~~~GM~~~~~v~~~~--~~~~~~~p~~~~~~C~~~~~~~ 515 (521)
T 1v10_A 461 FVTDNPGPWFLHCHIDWHLEAGLAVVFAEDIPN--IPIANAISPAWDDLCPKYNANN 515 (521)
T ss_dssp EECCSCEEEEEEESCHHHHTTTCEEEEEESGGG--HHHHSCCCHHHHTHHHHHTTCC
T ss_pred EEeCCCeeEEEeeChHHHHhCCCeEEEEECCcc--hhhccCCChHHhhhchhhhccC
Confidence 999999999999999999999999999886543 333455564 578999988764
No 5
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=100.00 E-value=1.1e-95 Score=779.63 Aligned_cols=468 Identities=22% Similarity=0.340 Sum_probs=364.8
Q ss_pred EEEEEEEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCC-----CceEeeCCccCCCCCCCCCCCcc-
Q 009054 31 RFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPE-----PFLISWNGVQQRRNSYEDGVYGT- 104 (545)
Q Consensus 31 ~~~~l~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~-----~~~iH~HG~~~~~~~~~DGv~~~- 104 (545)
..|+|+|++..+++||+.+.+|+|||++|||+||+++||+|+|+|+|+|++ +|+|||||++|++++++||++++
T Consensus 5 ~~~~l~i~~~~~~pdg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~DGv~~vt 84 (495)
T 3t6v_A 5 PVTDLHIVNADIVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFIT 84 (495)
T ss_dssp SEEEEEEEEEEECTTSCCEEEEEETTSSSCCEEEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTTT
T ss_pred CeEEEEEEEEEEcCCCceEEEEEECCcccCCeEEEECCcEEEEEEEECCCCccCCCceEEEeCCcccCCCccccCCCccc
Confidence 579999999999999999999999999999999999999999999999985 79999999999989999999999
Q ss_pred CCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCCC-CCCCCCCCCcceEEEeeeeecchhhHHHhh
Q 009054 105 TCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLI-PVPFPEPAGDFTVLIGDWYKANHNKLKSVL 183 (545)
Q Consensus 105 q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~-~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~ 183 (545)
||+|+||++|+|+|++++++||||||||.+.|+.+||+|+|||++++.. ..+|+..++|++|+++||+++....+
T Consensus 85 q~pI~PG~sftY~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~~~~~~~~~~d~~e~~l~l~Dw~~~~~~~~---- 160 (495)
T 3t6v_A 85 QCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDANLYDVDDDTTIITLADWYHVLAKEM---- 160 (495)
T ss_dssp BCCBCTTCEEEEEEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTTCTTGGGCSBCSGGGEEEEEEECSSCGGGS----
T ss_pred cCCCCCCCeEEEEEEeCCCCceeeeeccchhHHhcCceEEEEEcCccccccccCCCCCceeEEEEecccCCchhhh----
Confidence 9999999999999998788999999999999999999999999986432 12343345678999999999866432
Q ss_pred ccCCCCCCCCeEEEcccCC--------CCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeEEeEE
Q 009054 184 DRGHRLPSPDGILINGHGS--------NGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTTYSSL 255 (545)
Q Consensus 184 ~~~~~~~~~~~~liNG~~~--------~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v 255 (545)
.+.....++++||||++. ..+.++|++|++|||||||+|..+.+.|+|+||+|+|||+||.+++|+.+++|
T Consensus 161 -~~~~p~~~d~~liNG~g~~~~~~~~~~~~~~~v~~G~~~RlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l 239 (495)
T 3t6v_A 161 -GAGGAITADSTLIDGLGRTHVNVAAVPLSVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEI 239 (495)
T ss_dssp -CSSSCCCCSEEEETTBCCBSSSCCCCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEEEEETTEEEEEEEESBE
T ss_pred -ccCCCCCCcEEEECCcCcCCCCcccCCceEEEEcCCCEEEEEEEecCCCeeEEEEECCCeEEEEEeCCcccCCEEeeeE
Confidence 122234789999999863 23689999999999999999999999999999999999999999999999999
Q ss_pred EEccCceEEEEEEeCCCCcceEEEEeecccCC---ccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCC
Q 009054 256 DVHVGQSYSVLVTMDQPPQDFYIAVSTRFTNK---VLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTA 332 (545)
Q Consensus 256 ~l~pgeR~dv~v~~~~~~g~y~~~~~~~~~~~---~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~ 332 (545)
.|+|||||||+|++++++|+|||++....... .....|+|+|.++....+ ....+... .....+ ..|.+
T Consensus 240 ~i~pGqR~dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~ail~Y~~~~~~~p--~~~~~~~~----~~~~~~--~~L~p 311 (495)
T 3t6v_A 240 QIFAAQRYSFVLNANQPVGNYWIRANPNSGGEGFDGGINSAILRYDGATTADP--VTVASTVH----TKCLIE--TDLHP 311 (495)
T ss_dssp EECTTCEEEEEEECCSCSSEEEEEEEESSSSCSCGGGTTEEEEEETTSCSSCC--CCCCCSSC----SSBCCG--GGCCB
T ss_pred EEcCceEEEEEEECCCCCceEEEEEecccCccccCCCceEEEEEECCCCCCCC--CCCCCCCC----cccccc--ccccc
Confidence 99999999999999987799999998643222 223579999987643211 10001000 000110 12222
Q ss_pred CCCCCCCCCCCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCcccc
Q 009054 333 SGPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLD 412 (545)
Q Consensus 333 ~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 412 (545)
....+.|... .....++++.+...+ ++ ..|+|||++|..++.|+|++.+. +.+... .....
T Consensus 312 ~~~~~~p~~~---~~~~~d~~~~l~~~~---~~-~~w~iNg~s~~~~~~P~L~~~~~---g~~~~~---------~~~~~ 372 (495)
T 3t6v_A 312 LSRNGVPGNP---HQGGADCNLNLSLGF---AC-GNFVINGVSFTPPTVPVLLQICS---GANTAA---------DLLPS 372 (495)
T ss_dssp SSCCCCSSCS---STTCSSEEEECCEEE---ET-TEEEETTBCCCCCSSCHHHHHHT---TCCSST---------TSSST
T ss_pred cccccCCCcc---CCCCCcEEEEEEEEe---cC-cEEEEcCEecCCCCCcchhhhhc---CCcCcc---------cccCC
Confidence 2111111100 011245666655432 22 27999999999999998876542 222111 01224
Q ss_pred ceEEecCCCcEEEEEEE-cCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCC-CCEEEEEEEeCC
Q 009054 413 TSVMGADFRGFIEIVFQ-NHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYP-KSWTAIYVALDN 490 (545)
Q Consensus 413 ~~~~~~~~g~~v~~~i~-N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~-~~~v~irf~adn 490 (545)
..++.++.|++|||+|+ |.+.+.||||||||+|+||++++. ..+|+.+|+||||+.|++ ++|++|||++||
T Consensus 373 ~~v~~~~~g~~V~ivl~~n~~~~~HP~HLHGh~F~vl~~~g~-------~~~n~~~P~~rDtv~v~~~g~~~~irf~adn 445 (495)
T 3t6v_A 373 GSVISLPSNSTIEIALPAGAAGGPHPFHLHGHDFAVSESASN-------STSNYDDPIWRDVVSIGGVGDNVTIRFCTDN 445 (495)
T ss_dssp TSEEEECTTCEEEEEEECCSSSCCCEEEETTCCEEEEECTTC-------CCCCSSSCCEESEEECCSTTCEEEEEEECCS
T ss_pred cceEEecCCCEEEEEEccCCCCCCcceeecCCcEEEEecCCC-------CCcccCCCCCccEEEcCCCCcEEEEEEEcCC
Confidence 56789999999999998 677889999999999999987431 247888999999999997 899999999999
Q ss_pred ccceeeeecchhhhhcceEEEEEEeCCCccccccCCCCCcc-cccccccC
Q 009054 491 VGMWNVRSEFWARQYLGQQFYLRVYSPVESIRDEYPIPKNA-LLCGRAKG 539 (545)
Q Consensus 491 pG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~-~~c~~~~~ 539 (545)
||.|+|||||++|++.|||.+|. +.+++ +.+..++|++. ..|..+..
T Consensus 446 PG~W~~HCHi~~H~~~Gm~~~~~-e~~~~-~~~~~~~p~~~~~~C~~~~~ 493 (495)
T 3t6v_A 446 PGPWFLHCHIDWHLDAGFAIVFA-EDIPN-TASANPVPEAWSNLCPSYDS 493 (495)
T ss_dssp CEEEEEEESCHHHHHTTCEEEEE-ETHHH-HHHHCCCCHHHHHHHHHHHH
T ss_pred CeeEEEEecchhHhhcCCeEEEE-EChhH-hccccCCCHHHHHHhhHhhc
Confidence 99999999999999999999994 45543 33334566664 68977654
No 6
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=100.00 E-value=3.3e-95 Score=775.72 Aligned_cols=468 Identities=22% Similarity=0.377 Sum_probs=366.2
Q ss_pred EEEEEEEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCC-----CceEeeCCccCCCCCCCCCCCcc-
Q 009054 31 RFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPE-----PFLISWNGVQQRRNSYEDGVYGT- 104 (545)
Q Consensus 31 ~~~~l~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~-----~~~iH~HG~~~~~~~~~DGv~~~- 104 (545)
..|+|+|++..+++||+.+.+|+|||++|||+||+++||+|+|+|+|+|++ +|+|||||++|++++++||++++
T Consensus 4 ~~~~l~v~~~~~~pdG~~~~~~~~NG~~PGP~I~~~~GD~v~V~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~DGv~~vt 83 (499)
T 3pxl_A 4 PVADLTITDAAVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPAFIN 83 (499)
T ss_dssp SEEEEEEEEEEECTTSCCEEEEEETTBSSCCCEEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTTT
T ss_pred ceEEEEEEEEEEcCCCcEEEEEEECCcccCCeEEEeCCCEEEEEEEECCCCccCCCceEEEeCCcccCCCccccCCCccc
Confidence 579999999999999999999999999999999999999999999999984 79999999999989999999999
Q ss_pred CCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCCC-CCCCCCCCCcceEEEeeeeecchhhHHHhh
Q 009054 105 TCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLI-PVPFPEPAGDFTVLIGDWYKANHNKLKSVL 183 (545)
Q Consensus 105 q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~-~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~ 183 (545)
||+|+||++|+|+|++++++||||||||.+.|+.+||+|+|||+++... ..+|+..++|++|+++||+++....
T Consensus 84 q~pI~PG~s~tY~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~~~~~~~~~~d~~~~~l~l~Dw~~~~~~~----- 158 (499)
T 3pxl_A 84 QCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVDNDDTVITLADWYHTAAKL----- 158 (499)
T ss_dssp BCCBCTTCEEEEEEECSSCCEEEEEEECSTTGGGGTCEEEEEEECTTCTTGGGCSBCSGGGEEEEEEECSSCTTT-----
T ss_pred cCCCCCCCeEEEEEEcCCCCceeeeeccchhHHhccceeEEEEcCCcccccccCCCCCceEEEEEEcccCCcccc-----
Confidence 9999999999999998788999999999999999999999999986432 1234333567899999999876532
Q ss_pred ccCCCCCCCCeEEEcccCC-------CCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeEEeEEE
Q 009054 184 DRGHRLPSPDGILINGHGS-------NGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTTYSSLD 256 (545)
Q Consensus 184 ~~~~~~~~~~~~liNG~~~-------~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~ 256 (545)
.+.....++++||||++. ..+.++|++|++|||||||+|..+.+.|+|+||+|+|||+||.+++|+.+++|.
T Consensus 159 -~~~~p~~~d~~liNG~~~~~~~~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~ 237 (499)
T 3pxl_A 159 -GPRFPGGADATLINGKGRAPSDSVAELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQ 237 (499)
T ss_dssp -SCSSCSSCSEEEETTBCCCTTCTTCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTBCEEEEEETTEEEEEEEESBEE
T ss_pred -ccCCCCCCcEEEECCCCcCCCCCCCCcceEEEcCCCEEEEEEEecCCCeeEEEEECCCeEEEEEECCcccCceEeeeEE
Confidence 122234679999999964 237899999999999999999999999999999999999999999999999999
Q ss_pred EccCceEEEEEEeCCCCcceEEEEeecccCC---ccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCC
Q 009054 257 VHVGQSYSVLVTMDQPPQDFYIAVSTRFTNK---VLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTAS 333 (545)
Q Consensus 257 l~pgeR~dv~v~~~~~~g~y~~~~~~~~~~~---~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~ 333 (545)
|+|||||||+|++++++|+|||++....... .....|+|+|.++....+......+.. .+.+ ..|.+.
T Consensus 238 i~pGqR~dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~ail~Y~~~~~~~p~~~~~~~~~-------~~~~--~~L~p~ 308 (499)
T 3pxl_A 238 IFAAQRYSFVLDANQAVDNYWIRANPNFGNVGFDGGINSAILRYDGAPAVEPTTNQTTSVK-------PLNE--VDLHPL 308 (499)
T ss_dssp ECTTCEEEEEEECCSCSSEEEEEEEESSSSCSCGGGTTEEEEEETTSCSSCCCCCCCCCSS-------BCCG--GGCCBS
T ss_pred ECCCcEEEEEEECCCCCceEEEEEecccCccccCCCceEEEEEeCCCCCCCCCCCCCCCCc-------cccc--cccccc
Confidence 9999999999999987799999997643222 223579999987643211000000000 0000 122222
Q ss_pred CCCCCCCCCCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccc
Q 009054 334 GPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDT 413 (545)
Q Consensus 334 ~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 413 (545)
...+.|... .....++++.+...+ ++ ..|+|||++|..++.|+|++.+. +.+... ......
T Consensus 309 ~~~~~p~~~---~~~~~d~~~~l~~~~---~~-~~w~iNg~s~~~~~~P~L~~~~~---g~~~~~---------~~~~~~ 369 (499)
T 3pxl_A 309 VSTPVPGAP---SSGGVDKAINMAFNF---NG-SNFFINGASFVPPTVPVLLQILS---GAQTAQ---------DLLPSG 369 (499)
T ss_dssp SCCCCSSCS---STTCSSEEEECCEEE---CS-SCEEETTBCCCCCSSCHHHHHHT---TCCSTT---------TSSSTT
T ss_pred ccccCCCcc---cCCCCcEEEEEEEEe---cC-cEEEEcCEecCCCCCchhhhhhc---CCcccc---------ccCCCc
Confidence 111111100 011356666665433 22 26999999999999998876542 221111 012245
Q ss_pred eEEecCCCcEEEEEEE---cCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCC---CCEEEEEEE
Q 009054 414 SVMGADFRGFIEIVFQ---NHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYP---KSWTAIYVA 487 (545)
Q Consensus 414 ~~~~~~~g~~v~~~i~---N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~---~~~v~irf~ 487 (545)
.++.++.|++|||+|+ |.+.+.||||||||+|+||+.++ ...+|+.+|+||||+.|++ ++|++|||+
T Consensus 370 ~v~~~~~g~~V~ivl~~~~n~~~~~HP~HLHGh~F~Vl~~~g-------~~~~n~~~P~~rDtv~v~~~~pg~~~~irf~ 442 (499)
T 3pxl_A 370 SVYVLPSNASIEISFPATAAAPGAPHPFHLHGHTFAVVRSAG-------STVYNYDNPIFRDVVSTGTPAAGDNVTIRFD 442 (499)
T ss_dssp SEEEECTTCEEEEEEECCTTSCSCSCEEEETTCCEEEEECTT-------CCCCCSSSCCEESEEECCCGGGTCEEEEEEE
T ss_pred eeEEecCCCEEEEEEecCcccCCCCccceecCCcEEEEeccC-------CcccccCCCCccceEEcCCcCCCcEEEEEEE
Confidence 6789999999999999 66678999999999999998743 1247889999999999997 999999999
Q ss_pred eCCccceeeeecchhhhhcceEEEEEEeCCCccccccCCCCCcc-cccccccCCC
Q 009054 488 LDNVGMWNVRSEFWARQYLGQQFYLRVYSPVESIRDEYPIPKNA-LLCGRAKGKH 541 (545)
Q Consensus 488 adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~-~~c~~~~~~~ 541 (545)
+||||.|+|||||++|++.|||.+| ++.+++ +.+..++|++. ..|..+...+
T Consensus 443 adnPG~W~~HCHi~~H~~~Gm~~~~-~e~~~~-~~~~~~~p~~~~~~C~~~~~~~ 495 (499)
T 3pxl_A 443 TNNPGPWFLHCHIDFHLEGGFAVVM-AEDTPD-VKAVNPVPQAWSDLCPTYDALD 495 (499)
T ss_dssp CCSCEEEEEEESSHHHHHTTCEEEE-EESGGG-HHHHSCCCHHHHTHHHHHHTSC
T ss_pred cCCCceEEEEeCChhHhhCCCcEEE-EEChhH-hccccCCCHHHHHhhhHhhccC
Confidence 9999999999999999999999998 455553 33334556664 7998877654
No 7
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=100.00 E-value=6.3e-94 Score=771.47 Aligned_cols=464 Identities=25% Similarity=0.408 Sum_probs=364.7
Q ss_pred EEEEEEEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCC-----CCceEeeCCccCCCCCCCCCCCcc-
Q 009054 31 RFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLP-----EPFLISWNGVQQRRNSYEDGVYGT- 104 (545)
Q Consensus 31 ~~~~l~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~-----~~~~iH~HG~~~~~~~~~DGv~~~- 104 (545)
..|+|++++..+.+||+++.+|+|||++ ||+|||++||+|+|+|+|+|+ ++|+|||||+++.+++++||++++
T Consensus 5 ~~~~l~i~~~~~~~~g~~~~~~~~NG~~-GP~i~~~~Gd~v~v~v~N~l~~~~~~~~tsiHwHG~~~~~~~~~DGv~~vt 83 (503)
T 1hfu_A 5 SVDTMTLTNANVSPDGFTRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVN 83 (503)
T ss_dssp SEEEEEEEEEEECTTSCCEEEEEETTBS-SCEEEEETTCCEEEEEEECCCCTTSCCSBCEEEETCCCTTCGGGSCCBTTT
T ss_pred CeEEEEEEEEEECCCCeEEEEEEECCcc-CCcEEEeCCCEEEEEEEeCCCCccCCCcccEeccceeccCCCccCCCcccc
Confidence 3699999999999999999999999999 999999999999999999998 999999999999888999999999
Q ss_pred CCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCCC-CCCCCCCCCcceEEEeeeeecchhhHHHhh
Q 009054 105 TCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLI-PVPFPEPAGDFTVLIGDWYKANHNKLKSVL 183 (545)
Q Consensus 105 q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~-~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~ 183 (545)
||+|+||++|+|+|++++++||||||||.+.|+++||+|+|||+++... ..+|+..++|++|+++||+++...++..
T Consensus 84 q~~I~PG~~~~Y~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~~e~~l~l~Dw~~~~~~~~~~-- 161 (503)
T 1hfu_A 84 QCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDNDPHAALYDEDDENTIITLADWYHIPAPSIQG-- 161 (503)
T ss_dssp BCCBCTTCEEEEEECCTTCCEEEEEEECSTTGGGGTCEEEEEEECTTCTTGGGCSBCSTTSEEEEEEECSSCGGGCC---
T ss_pred cCCcCCCCeEEEEEEeCCCCccEEEEecchhhhhCcceeeEEEcCCCCCcccCCCCCCceEEEEEcccccCChHHhcC--
Confidence 9999999999999998788999999999999999999999999986422 2334333469999999999987765421
Q ss_pred ccCCCCCCCCeEEEcccCC-------CCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeEEeEEE
Q 009054 184 DRGHRLPSPDGILINGHGS-------NGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTTYSSLD 256 (545)
Q Consensus 184 ~~~~~~~~~~~~liNG~~~-------~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~ 256 (545)
.+.++.++|||+.. ..+.++|++|++|||||||+|..+.+.|+|+||+|+|||+||.+++|+.++++.
T Consensus 162 -----~~~~d~~liNG~~~~~~~~~~~~~~~~v~~g~~~RlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~~p~~~~~l~ 236 (503)
T 1hfu_A 162 -----AAQPDATLINGKGRYVGGPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQ 236 (503)
T ss_dssp -------CCSEEEETTBCCBTTCCCCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEEEEETTEEEEEEEESBEE
T ss_pred -----CCCCCEEEECcccccCCCCCCcceEEEEcCCCEEEEEEEecCCcccEEEEEcCceEEEEeccCccccccccCeEE
Confidence 14579999999986 138999999999999999999999999999999999999999999999999999
Q ss_pred EccCceEEEEEEeCCCCcceEEEEeecccCC-------ccceEEEEEecCCCCCCCCCCCCCCC-ccccccccccccccc
Q 009054 257 VHVGQSYSVLVTMDQPPQDFYIAVSTRFTNK-------VLTSTGTLHYSNSAHPVSGPVPGGPT-TQIDWSLNQARSIRT 328 (545)
Q Consensus 257 l~pgeR~dv~v~~~~~~g~y~~~~~~~~~~~-------~~~~~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~l~~ 328 (545)
|+|||||||+|++++.+|+|+|++....... .....++|+|.+.....+.. +..|. .+. . . .
T Consensus 237 l~pgeR~dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~p~~-~~~~~~~~l----~---~--~ 306 (503)
T 1hfu_A 237 IFTGQRYSFVLDANQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAANADPTT-SANPNPAQL----N---E--A 306 (503)
T ss_dssp ECTTCEEEEEEECCSCSSEEEEEEEESSCGGGGGGCCGGGTTEEEEEETTSCSSCCCC-CCCSSCCBC----C---G--G
T ss_pred EcccceEEEEEEcCCCccceeeeeccccCCcccccccCCCceEEEEEECCCCCCCCCC-CCCCccCCC----c---c--c
Confidence 9999999999999977899999998653211 12346999998764321100 00110 010 0 0 1
Q ss_pred CCCCCCCCCCCCCCCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCC
Q 009054 329 NLTASGPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGN 408 (545)
Q Consensus 329 ~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~ 408 (545)
.+.+....+.|.... ....++++.+.... ++. .|+|||++|..+..|+|++.+. +.+... +
T Consensus 307 ~l~p~~~~~~p~~~~---~~~~~~~~~l~~~~---~~~-~~~iNg~~~~~~~~P~l~~~~~---g~~~~~---------~ 367 (503)
T 1hfu_A 307 DLHALIDPAAPGIPT---PGAADVNLRFQLGF---SGG-RFTINGTAYESPSVPTLLQIMS---GAQSAN---------D 367 (503)
T ss_dssp GCBBSSSCSCSSCSS---TTCSSEEEECCEEE---ETT-EEEETTBCCCCCSSCHHHHHHT---TCCSGG---------G
T ss_pred cccccCccCCCCccc---CCcceEEEEEEeec---cCc-eEEECCCccCCCCCcchhhhhc---CCcccc---------c
Confidence 122211111111100 01234455444321 222 7999999999888888765432 111100 1
Q ss_pred ccccceEEecCCCcEEEEEEE-cCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEe-CCCCEEEEEE
Q 009054 409 IYLDTSVMGADFRGFIEIVFQ-NHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQV-YPKSWTAIYV 486 (545)
Q Consensus 409 ~~~~~~~~~~~~g~~v~~~i~-N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v-p~~~~v~irf 486 (545)
.+.++.++.++.|++|||+++ |.+.+.||||||||+||||+++++. .+++.+|.|||||.| ++++|++|||
T Consensus 368 ~~~~~~~~~v~~g~~vei~l~~n~~~~~HP~HLHGh~F~Vl~~~~~~-------~~n~~~p~~rDTV~V~ppg~~v~irf 440 (503)
T 1hfu_A 368 LLPAGSVYELPRNQVVELVVPAGVLGGPHPFHLHGHAFSVVRSAGSS-------TYNFVNPVKRDVVSLGVTGDEVTIRF 440 (503)
T ss_dssp SSSTTSEEEECSSCEEEEEEECCSTTCCCEEEETTCCEEEEECTTCC-------CCCCSSBCEESEEECCSTTCEEEEEE
T ss_pred CCCCceEEEccCCCEEEEEEECCCCCCCCCEEEecceEEEEecCCCC-------ccccCCCCeeeeEEecCCCceEEEEE
Confidence 223567889999999999999 4557899999999999999997653 257789999999999 8999999999
Q ss_pred EeCCccceeeeecchhhhhcceEEEEEEeCCCccccccCCCCC-cccccccccCC
Q 009054 487 ALDNVGMWNVRSEFWARQYLGQQFYLRVYSPVESIRDEYPIPK-NALLCGRAKGK 540 (545)
Q Consensus 487 ~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~-~~~~c~~~~~~ 540 (545)
++||||.|||||||++|++.|||..|.|...+ +.+..++|+ +.+.|+.+...
T Consensus 441 ~adnPG~W~~HCHil~H~~~GM~~~~~v~~~~--~~~~~~~p~~~~~~C~~~~~~ 493 (503)
T 1hfu_A 441 VTDNPGPWFFHCHIEFHLMNGLAIVFAEDMAN--TVDANNPPVEWAQLCEIYDDL 493 (503)
T ss_dssp ECCSCEEEEEEESSHHHHHTTCEEEEEECHHH--HHHHCCCCHHHHHHHHHHHTC
T ss_pred EcCCCeeeeEecCchhHhhCCCeEEEEECchh--hhhccCCChHHhhhccchhhc
Confidence 99999999999999999999999999886443 323445564 47899988765
No 8
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=100.00 E-value=2.9e-93 Score=774.46 Aligned_cols=479 Identities=23% Similarity=0.349 Sum_probs=370.0
Q ss_pred cCCCeEEEEEEEEEEE--ecCCCee-EEEEEEcCcccCceEEEecCCEEEEEEEeCC-CCCceEeeCCccCCCCCCCCCC
Q 009054 26 AESPYRFFTWNVTYGD--IYPLGVR-QQGILINGQFPGPDIYSVTNDNLIINVHNSL-PEPFLISWNGVQQRRNSYEDGV 101 (545)
Q Consensus 26 ~~~~~~~~~l~~~~~~--~~~dG~~-~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l-~~~~~iH~HG~~~~~~~~~DGv 101 (545)
+.+.+++|+|++++.. +.+||+. +.+|+|||++|||+|||++||+|+|+|+|+| +++++|||||+++.+++++||+
T Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~Ng~~PGP~i~~~~GD~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~ 108 (559)
T 2q9o_A 29 DTGVTQSYVFNLTEVDNWMGPDGVVKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGA 108 (559)
T ss_dssp CCCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTBSSCCCEEEETTCEEEEEEEEECSSCCBCEEEETCCCTTCGGGSCC
T ss_pred CCCeEEEEEEEEEEeEeeECCCCccceEEEEECCcccCCcEEEeCCCEEEEEEEeCCCCCCceEEcCCCccCCCCCcCCC
Confidence 3556899999999999 8899999 9999999999999999999999999999999 6899999999999888999999
Q ss_pred Ccc-CCcCCC-CCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCCCCCCCCCCCCcc-eEEEeeeeecchhh
Q 009054 102 YGT-TCPIPP-GKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLIPVPFPEPAGDF-TVLIGDWYKANHNK 178 (545)
Q Consensus 102 ~~~-q~~i~p-G~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~-~l~~~d~~~~~~~~ 178 (545)
|++ ||+|+| |++|+|+|++ .++||||||||...|+++||+|+|||++++. .+| |.|. +|+++||+++...+
T Consensus 109 ~~~tq~~I~P~G~~~~Y~f~~-~q~GT~wYH~H~~~q~~~Gl~G~liV~~~~~--~~~---d~d~~~l~l~Dw~~~~~~~ 182 (559)
T 2q9o_A 109 NGVTECPIPPKGGQRTYRWRA-RQYGTSWYHSHFSAQYGNGVVGTIQINGPAS--LPY---DIDLGVFPITDYYYRAADD 182 (559)
T ss_dssp BTTTBCCBCTTTEEEEEEEEC-CSCEEEEEEECSTTGGGGTCEEEEEEECCCS--SCC---SEEEEEEEEEEECSSCHHH
T ss_pred CccccCccCCCCCeEEEEEEC-CCCEEEEEEEcccchhcCCceEEEEecCCCc--CCC---cccceEEEEeccccCCHHH
Confidence 999 999999 9999999996 6799999999999999999999999998653 245 7787 99999999998776
Q ss_pred HHHhhccCCCCCCCCeEEEcccCCC-------CceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeE
Q 009054 179 LKSVLDRGHRLPSPDGILINGHGSN-------GASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTT 251 (545)
Q Consensus 179 ~~~~~~~~~~~~~~~~~liNG~~~~-------~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~ 251 (545)
+..... ....+.++.++|||+... .+.++|++|++|||||||+|..+.+.|+|+||+|+|||+||.+++|+.
T Consensus 183 ~~~~~~-~~~~~~~d~~liNG~~~~~~~~~g~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~gh~~~vi~~DG~~~~p~~ 261 (559)
T 2q9o_A 183 LVHFTQ-NNAPPFSDNVLINGTAVNPNTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMT 261 (559)
T ss_dssp HHHHHT-TSCCCCBSEEEETTBCBCTTTCCBCCCEEEECTTCEEEEEEEECCSSCCEEEEETTBCEEEEEETTEEEEEEE
T ss_pred Hhhhhh-cCCCCccceeEECCccccCcCCCCCceEEEEcCCCEEEEEEEecCCCceEEEEECCCceEEEecCCcccCceE
Confidence 643222 223456799999999852 368999999999999999999999999999999999999999999999
Q ss_pred EeEEEEccCceEEEEEEeCCCCcceEEEEee--cc---cCCccceEEEEEecCCCCCCCCCCCCCC-Ccccccccccccc
Q 009054 252 YSSLDVHVGQSYSVLVTMDQPPQDFYIAVST--RF---TNKVLTSTGTLHYSNSAHPVSGPVPGGP-TTQIDWSLNQARS 325 (545)
Q Consensus 252 ~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~--~~---~~~~~~~~ail~y~~~~~~~~~~~p~~p-~~~~~~~~~~~~~ 325 (545)
++++.|+|||||||+|++++.+|+|||++.. .. ........++|+|.++... .|..+ ....+ ..+.+
T Consensus 262 ~~~l~l~pgeR~dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~~~ail~y~~~~~~----~P~~~~~~~~~---~~~~~ 334 (559)
T 2q9o_A 262 VDSLFLAVGQRYDVVIDASRAPDNYWFNVTFGGQAACGGSLNPHPAAIFHYAGAPGG----LPTDEGTPPVD---HQCLD 334 (559)
T ss_dssp ESCEEECTTCEEEEEEECCSCSSEEEEEEECCGGGTTCCBSSSCCEEEEEETTSCCS----CCCCCCCCCCC---CTTCC
T ss_pred eCeEEEccEEEEEEEEECCCCCCcEEEEEEeccccccCCCCCCceeEEEEECCCCCC----CCCCCCCcCCC---ccccc
Confidence 9999999999999999999778999999986 21 1223456899999876431 11111 00000 00000
Q ss_pred cccCCCCCCCCCCCCCCCCccccccceEEEeeccccccCCeEEEEEcceeecC-CCCchhhhcccccccccccCCCCCCC
Q 009054 326 IRTNLTASGPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIP-ADTPLKLADYFKIGGVFRVGSIQDQP 404 (545)
Q Consensus 326 l~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~-~~~P~l~~~~~~~~~~~~~~~~~~~p 404 (545)
. ..+.+..+.+.|...+ ....++++.+.... ...+...|+|||++|.. +..|+|.+.+.+.. .
T Consensus 335 ~-~~l~p~~~~~~p~~~~---~~~~~~~~~~~~~~-~~~~~~~~~iNg~s~~~~~~~P~L~~~~~g~~-~---------- 398 (559)
T 2q9o_A 335 T-LDVRPVVPRSVPVNSF---VKRPDNTLPVALDL-TGTPLFVWKVNGSDINVDWGKPIIDYILTGNT-S---------- 398 (559)
T ss_dssp C-SCCCBSSCCBCCCTTC---CCCGGGEEEEEEEC-SSSSSCEEEETTBCCCCCTTSCHHHHHHHTCC-C----------
T ss_pred c-cccccCCCCCCCCccc---ccceeEEEEEEeec-CCCceEEEEECCEecccCCCCCcHhHhhcCCc-c----------
Confidence 0 1122211111111111 11123444444321 12345689999999975 46787654332110 0
Q ss_pred CCCCccccceEEecCC-CcEEEEEEEcCC----CCCCceeecCCceEEEeecc---------CcCCCC-CCCCCCCCCCC
Q 009054 405 TGGNIYLDTSVMGADF-RGFIEIVFQNHE----NIVQSWHIDGYNFWVVGMNG---------GVWTPA-SRNEYNLRDAV 469 (545)
Q Consensus 405 ~~~~~~~~~~~~~~~~-g~~v~~~i~N~~----~~~HP~HlHG~~F~Vl~~g~---------g~~~~~-~~~~~~~~~p~ 469 (545)
...+.+++.++. +++++|+|+|.+ .+.||||||||+||||+++. |.|++. ....+++.+|+
T Consensus 399 ----~~~~~~~~~~~~~~~v~~~vi~n~~~~~~~~~HP~HLHGh~F~Vl~~g~~~~~~~~~~g~~~~~~~~~~~n~~~p~ 474 (559)
T 2q9o_A 399 ----YPVSDNIVQVDAVDQWTYWLIENDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPP 474 (559)
T ss_dssp ----CCGGGCEEEECCSSCEEEEEEEECTTSSCCCCEEEEESSSCEEEEEESCCCCTTSCCCCCCCHHHHGGGCCCBSCC
T ss_pred ----CCCCceEEEcCCCCEEEEEEEeCCCccccCCCCcEEECCCceEEEecccccccccccccccCccccccccccCCCC
Confidence 112456677765 678888999976 78999999999999999987 666542 12347889999
Q ss_pred ccceEEeCCCCEEEEEEEeCCccceeeeecchhhhhcceEEEEEEeCCCccccccCCC--CC-cccccccccCC
Q 009054 470 SRCTTQVYPKSWTAIYVALDNVGMWNVRSEFWARQYLGQQFYLRVYSPVESIRDEYPI--PK-NALLCGRAKGK 540 (545)
Q Consensus 470 ~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~--p~-~~~~c~~~~~~ 540 (545)
|||||.|++++|++|||++||||.|||||||++|++.|||..|.|...+ +.+..++ |+ ..+.|+.+...
T Consensus 475 ~RDTV~Vp~~g~v~IrF~adNPG~W~~HCHil~H~~~GM~~~~~v~~~~--~~~~~~~~~p~~~~~~C~~~~~~ 546 (559)
T 2q9o_A 475 RRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFLERPAD--LRQRISQEDEDDFNRVCDEWRAY 546 (559)
T ss_dssp EESEEEECTTSEEEEEEECCSCEEEEEEECCHHHHHTTCEEEEEECHHH--HGGGCCHHHHHHHHHHHHHHHHH
T ss_pred ccceEEccCCccEEEEEEcCCCeeEEEEecchhHhhcCCeEEEEECcch--hhhccccCCchhhhhhccccccc
Confidence 9999999999999999999999999999999999999999999885432 3334443 55 45899887653
No 9
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=100.00 E-value=7.3e-88 Score=713.56 Aligned_cols=403 Identities=19% Similarity=0.262 Sum_probs=326.8
Q ss_pred cCCCeEEEEEEEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccC
Q 009054 26 AESPYRFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTT 105 (545)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q 105 (545)
+.+++++|+|+++++.+.++|+++.+|+|||++|||+|||++||+|+|+|+|+|+++++|||||+++. +++||++
T Consensus 12 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~--~~~DG~~--- 86 (439)
T 2xu9_A 12 SQGGLLSLKLSATPTPLAIAGQRATLLTYGGSFPGPTLRVRPRDTVRLTLENRLPEPTNLHWHGLPIS--PKVDDPF--- 86 (439)
T ss_dssp CBTTEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCEEEECTTCEEEEEEEECSSSCBCCEEETCCCC--TTTSCTT---
T ss_pred cCCCeEEEEEEEEEEEEEcCCceEEEEEECCcccCCEEEEeCCCEEEEEEEECCCCCcceEeCCCCCC--ccccCCc---
Confidence 45678999999999999999999999999999999999999999999999999999999999999875 5899987
Q ss_pred CcCCCCCeEEEEEEeC-CcceeeeeecCch----hhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchhhHH
Q 009054 106 CPIPPGKNFTYILQVK-DQIGSYFYFPSVG----FQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHNKLK 180 (545)
Q Consensus 106 ~~i~pG~~~~y~~~~~-~~~Gt~wYH~H~~----~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~ 180 (545)
+.|+||++|+|+|+++ +++||||||||.+ .|+++||+|+|||+++.+.. +....++|++|+++||+++... +.
T Consensus 87 ~~I~PG~~~~Y~f~~~~~~~GT~wYH~H~~~~t~~q~~~Gl~G~liV~~~~~~~-~~~~~~~e~~l~l~D~~~~~~~-~~ 164 (439)
T 2xu9_A 87 LEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVESSLDAI-PELREAEEHLLVLKDLALQGGR-PA 164 (439)
T ss_dssp CCBCTTCEEEEEEECCSSCCEEEEEECCCTTSHHHHHHTTCCEEEEECCGGGGS-HHHHTSEEEEEEEEEECEETTE-EC
T ss_pred ccCCCCCeEEEEEecCCCCCcceEeccCCCCchHHHHHhhCeEEEEEcCccccC-ccCCCCCcEEEEEEeeeeCCCC-cC
Confidence 5799999999999975 4799999999984 79999999999999864321 1112378999999999987531 10
Q ss_pred Hhhc-cCCCCCCCCeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccc-eeeEEeEEEEc
Q 009054 181 SVLD-RGHRLPSPDGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHT-IQTTYSSLDVH 258 (545)
Q Consensus 181 ~~~~-~~~~~~~~~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~-~p~~~~~v~l~ 258 (545)
.... .......++.++|||+.. |.++|++| +|||||||+|+.+.+.|+|+||+|+||+.||+++ +|+.++++.|+
T Consensus 165 ~~~~~~~~~g~~~~~~~iNG~~~--p~l~v~~g-~~RlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~~~p~~~~~l~l~ 241 (439)
T 2xu9_A 165 PHTPMDWMNGKEGDLVLVNGALR--PTLVAQKA-TLRLRLLNASNARYYRLALQDHPLYLIAADGGFLEEPLEVSELLLA 241 (439)
T ss_dssp CCCHHHHHHCCCCSEEEETTEES--CEEECSSS-EEEEEEEECCSSCCEEEEETTBCEEEEEETTEEEEEEEEESCEEEC
T ss_pred CCCccccccCCCCCEEEECCccC--CcEEecCC-eEEEEEEecCCCceEEEEECCceEEEEecCCCCCCCceEeceEEEC
Confidence 0000 000123468999999998 99999999 9999999999999999999999999999999997 89999999999
Q ss_pred cCceEEEEEEeCCCCcceEEEEeecccCC------------------ccceEEEEEecCCCCCCCCCCCCCCCccccccc
Q 009054 259 VGQSYSVLVTMDQPPQDFYIAVSTRFTNK------------------VLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSL 320 (545)
Q Consensus 259 pgeR~dv~v~~~~~~g~y~~~~~~~~~~~------------------~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~ 320 (545)
|||||||+|++++ +|+|+|++....... .....++++|.+...+ .++|..
T Consensus 242 pgeR~dv~v~~~~-~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~p~~--------- 309 (439)
T 2xu9_A 242 PGERAEVLVRLRK-EGRFLLQALPYDRGAMGMMDMGGMAHAMPQGPSRPETLLYLIAPKNPKP--LPLPKA--------- 309 (439)
T ss_dssp TTCEEEEEEECCS-SEEEEEEEECCCCCCEEEECSSSCCEEEECCSCCCEEEEEEEECSSCCC--CCCCSC---------
T ss_pred CceeEEEEEEcCC-CceEEEEecccccCCccccccccccccccCCCCCcceeEEEEecCCCcc--ccCccc---------
Confidence 9999999999995 899999997542211 1245678888765321 111110
Q ss_pred ccccccccCCCCCCCCCCCCCCCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCC
Q 009054 321 NQARSIRTNLTASGPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSI 400 (545)
Q Consensus 321 ~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~ 400 (545)
+.+....+.+ ..++++.|...+ .+ ..|+|||++|..+..+
T Consensus 310 ---------l~~~~~l~~~---------~~~r~~~l~~~~---~g-~~~~iNg~~~~~~~~~------------------ 349 (439)
T 2xu9_A 310 ---------LSPFPTLPAP---------VVTRRLVLTEDM---MA-ARFFINGQVFDHRRVD------------------ 349 (439)
T ss_dssp ---------CCCCCCCCCC---------SEEEEEEEEEEG---GG-TEEEETTBCCCTTCCC------------------
T ss_pred ---------CCCcccCCCC---------CcceEEEEEeec---cC-ceEeECCEECCCCCCc------------------
Confidence 0000000101 124677776533 11 3699999998643222
Q ss_pred CCCCCCCCccccceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCC
Q 009054 401 QDQPTGGNIYLDTSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKS 480 (545)
Q Consensus 401 ~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~ 480 (545)
+.++.|++++|+|+|.+.+.||||||||+||||+++++++ .+|.|||||.|++++
T Consensus 350 ---------------~~~~~g~~~~~~~~N~~~~~HP~HLHG~~F~Vl~~~g~~~----------~~p~~rDTv~v~p~~ 404 (439)
T 2xu9_A 350 ---------------LKGQAQTVEVWEVENQGDMDHPFHLHVHPFQVLSVGGRPF----------PYRAWKDVVNLKAGE 404 (439)
T ss_dssp ---------------EEECTTCEEEEEEEECSSSCEEEEESSCCBEEEEETTEEC----------SSCCCBSEEEECTTC
T ss_pred ---------------eecCCCCEEEEEEEcCCCCCCCceeCCCcEEEEeeCCCCC----------CCCCCeEEEEeCCCC
Confidence 4578999999999999999999999999999999976543 368999999999999
Q ss_pred EEEEEEEeCCccceeeeecchhhhhcceEEEEEEe
Q 009054 481 WTAIYVALDNVGMWNVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 481 ~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~ 515 (545)
+++|||++||||.|||||||++|++.|||..|+|.
T Consensus 405 ~v~i~f~adnpG~w~~HCHil~H~~~GMm~~~~Vg 439 (439)
T 2xu9_A 405 VARLLVPLREKGRTVFHCHIVEHEDRGMMGVLEVG 439 (439)
T ss_dssp EEEEEEECCSCEEEEEEESSHHHHHTTCEEEEEEC
T ss_pred EEEEEEEcCCCCCEEEECCcchhhhcCCcEEEEeC
Confidence 99999999999999999999999999999999984
No 10
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=100.00 E-value=9.2e-87 Score=705.97 Aligned_cols=403 Identities=19% Similarity=0.174 Sum_probs=322.5
Q ss_pred CeEEEEEEEEEEEecC-CCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCc
Q 009054 29 PYRFFTWNVTYGDIYP-LGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCP 107 (545)
Q Consensus 29 ~~~~~~l~~~~~~~~~-dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~ 107 (545)
.+++|+|++++.++++ +|.++.+|+|||++|||+|||++||+|+|+|+|+|+++++|||||+++.+ .+||+| ||+
T Consensus 17 ~~~~~~l~~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~--~~DG~~--~~~ 92 (451)
T 2uxt_A 17 RGQPLFMTVQRAHWSFTPGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMTVAGLQVPG--PLMGGP--ARM 92 (451)
T ss_dssp SSCCEEEEEEECCGGGCSSSSSCCEEETTSSBCCEEEEETTCEEEEEEEECSSSCBCEEEETCCCCG--GGSCSG--GGC
T ss_pred CceEEEEEEEEEEEEcCCCceeEEEEECCcccCceEEEeCCCEEEEEEEECCCCCccEEECCccCCC--CCCCCC--cCc
Confidence 3578999999999998 79999999999999999999999999999999999999999999999875 499998 899
Q ss_pred CCCCCeEEEEEEeCCcceeeeeecCc----hhhhhcCeeeEEEEeCCCCCCCCCC--CCCCcceEEEeeeeecchhhHHH
Q 009054 108 IPPGKNFTYILQVKDQIGSYFYFPSV----GFQKAAGGFGGIRILSRPLIPVPFP--EPAGDFTVLIGDWYKANHNKLKS 181 (545)
Q Consensus 108 i~pG~~~~y~~~~~~~~Gt~wYH~H~----~~~~~~Gl~G~liV~~~~~~~~~~~--~~~~e~~l~~~d~~~~~~~~~~~ 181 (545)
|+||++|+|+|++.+++||||||||. ..|+++||+|+|||++++....+++ ..++|++|+++||+++.++++..
T Consensus 93 i~PG~~~~Y~f~~~~~~GT~wYH~H~~~~t~~q~~~Gl~G~liV~~~~~~~~~~p~~y~~~e~~l~l~D~~~~~~~~~~~ 172 (451)
T 2uxt_A 93 MSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEY 172 (451)
T ss_dssp BCTTCEECCEEECCSCSEEEEEEECCTTTHHHHHHTTCEEEEEEECHHHHHSSSCCCBTTTEEEEEEEEEEECTTSCEEC
T ss_pred CCCCCeEEEEEEcCCCCcceEEecCCCCchhhhHhhcceEEEEEecCcccccCCCccCCCceEEEEEEeeecCCCCceec
Confidence 99999999999975569999999998 5899999999999998753322222 24789999999999987655432
Q ss_pred hhccCCCCCCCCeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEE-eCceeEEEeecCccc-eeeEEeEEEEcc
Q 009054 182 VLDRGHRLPSPDGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRI-QGHKMKLVEVEGTHT-IQTTYSSLDVHV 259 (545)
Q Consensus 182 ~~~~~~~~~~~~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i-~gh~~~via~DG~~~-~p~~~~~v~l~p 259 (545)
. ..+.....++.++|||+.. |.++|++| +|||||||+|..+.+.|+| +||+|+||+.||+++ +|+.++++.|+|
T Consensus 173 ~-~~~~~~~~~d~~liNG~~~--p~~~v~~g-~~RlRliNa~~~~~~~~~i~dg~~~~vi~~DG~~~~~P~~~~~l~l~p 248 (451)
T 2uxt_A 173 N-EPGSGGFVGDTLLVNGVQS--PYVEVSRG-WVRLRLLNASNSRRYQLQMNDGRPLHVISGDQGFLPAPVSVKQLSLAP 248 (451)
T ss_dssp C-CCSSSCCCCSEEEETTEES--CEEEECSS-EEEEEEEECCSSCCEEEEETTSCCEEEEECSSSEEEEEEEESSEEECT
T ss_pred c-cccCCCCcCCEEEECCccc--ceEEecCC-EEEEEEEccCCceeEEEEECCCCeEEEEEeCCCccCCceEeceEEECc
Confidence 1 1222345679999999999 99999999 9999999999999999999 899999999999997 899999999999
Q ss_pred CceEEEEEEeCCCCcceEEEEeecccC-----------CccceEEEEEecCCCCCCCCCCCCCCCccccccccccccccc
Q 009054 260 GQSYSVLVTMDQPPQDFYIAVSTRFTN-----------KVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRT 328 (545)
Q Consensus 260 geR~dv~v~~~~~~g~y~~~~~~~~~~-----------~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~ 328 (545)
||||||+|+++ .++.|+|++...... ......++++|........ .....| .
T Consensus 249 geR~dvlv~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~-~~~~~p---------------~ 311 (451)
T 2uxt_A 249 GERREILVDMS-NGDEVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPL-VTDSLP---------------M 311 (451)
T ss_dssp TCEEEEEEECT-TCCCEEEEC----------------CCCCSCCEEEEEEECSCCC-----CCC---------------S
T ss_pred eeEEEEEEEeC-CCCEEEEEecCccccccccccccccCCCCCCcceEEEEecCCCcC-ccccCc---------------c
Confidence 99999999999 478999998653211 1123357788865432110 000011 0
Q ss_pred CCCCCCCCCCCCCCCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCC
Q 009054 329 NLTASGPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGN 408 (545)
Q Consensus 329 ~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~ 408 (545)
.|.+....+. ....++++.|.. .|+|||++|..+..
T Consensus 312 ~L~~~~~~~~--------~~~~~~~~~l~~---------~~~iNg~~f~~~~~--------------------------- 347 (451)
T 2uxt_A 312 RLLPTEIMAG--------SPIRSRDISLGD---------DPGINGQLWDVNRI--------------------------- 347 (451)
T ss_dssp CSSSSCCCCC--------CCSEEEEEEECS---------SSSBTTBCCCTTCC---------------------------
T ss_pred ccCCCCCCCC--------CCcceEEEEEee---------EEEECCEeCCCCCC---------------------------
Confidence 1111111110 112445555541 48999999864311
Q ss_pred ccccceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEe
Q 009054 409 IYLDTSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVAL 488 (545)
Q Consensus 409 ~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~a 488 (545)
.+.++.|++++|+|+|. +.||||||||+||||++++.. +++.+|.|||||.| +++++|+|+|
T Consensus 348 ------~~~~~~G~~~~~~l~N~--~~HP~HLHGh~F~Vl~~~G~~--------~~~~~p~~rDTv~v--g~~~~i~~~~ 409 (451)
T 2uxt_A 348 ------DVTAQQGTWERWTVRAD--EPQAFHIEGVMFQIRNVNGAM--------PFPEDRGWKDTVWV--DGQVELLVYF 409 (451)
T ss_dssp ------CEEEETTCEEEEEEEEE--EEEEEEETTCEEEEEEETTBC--------CCGGGSSCBSEEEE--EEEEEEEEEC
T ss_pred ------cEEcCCCCEEEEEEECC--CCcCeEECCceEEEEeeCCcC--------CCcccCCCccEEEE--CCEEEEEEEe
Confidence 14578999999999998 789999999999999996422 45668999999999 8999999999
Q ss_pred CCccc----eeeeecchhhhhcceEEEEEEeCCC
Q 009054 489 DNVGM----WNVRSEFWARQYLGQQFYLRVYSPV 518 (545)
Q Consensus 489 dnpG~----w~~HCHil~H~d~GMm~~~~V~~~~ 518 (545)
||||. |||||||++|||.|||..|.|.+.+
T Consensus 410 dnpg~~~g~w~~HCHil~H~d~GMm~~~~v~~~~ 443 (451)
T 2uxt_A 410 GQPSWAHFPFYFNSQTLEMADRGSIGQLLVNPVP 443 (451)
T ss_dssp CSCCBTTBCEEEEESSHHHHHTTCEEEEEEECSC
T ss_pred CCCCCCCCceEEeCCchhHHhCCCcEEEEEccCc
Confidence 99988 9999999999999999999998664
No 11
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*
Probab=100.00 E-value=6.5e-85 Score=703.28 Aligned_cols=416 Identities=13% Similarity=0.136 Sum_probs=326.7
Q ss_pred eEEEEEEEEEEE--ecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCc
Q 009054 30 YRFFTWNVTYGD--IYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCP 107 (545)
Q Consensus 30 ~~~~~l~~~~~~--~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~ 107 (545)
+++|+|++++.. +.+||..+.+|+|||++|||+||+++||+|+|+|+|+|+++++|||||+++. +.+||++ ||+
T Consensus 36 ~~~~~l~~~~~~~~~~p~~~~~~~~~~NG~~PGPtI~~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~--~~~DG~~--~~~ 111 (534)
T 3abg_A 36 IWYYEVEIKPFTHQVYPDLGSADLVGYDGMSPGPTFQVPRGVETVVRFINNAEAPNSVHLHGSFSR--AAFDGWA--EDI 111 (534)
T ss_dssp CEEEEEEEECCEECCSTTTCCEECBEETSCSSEEEEEEETTCCEEEEEEECSSSCBCEEEETCCCC--TTTTTCS--SSC
T ss_pred eEEEEEEEEEEEEEecCCCCceeEEEECCcCcCceEEEeCCcEEEEEEEECCCCCceEEECCCcCC--CCCCCCC--CCC
Confidence 578999999765 5678988999999999999999999999999999999999999999999885 4699987 899
Q ss_pred CCCCCeEEEEEEeCCcceeeeeecCch----hhhhcCeeeEEEEeCCCCCCCCCCC--CCCcceEEEeeeeecchhhHHH
Q 009054 108 IPPGKNFTYILQVKDQIGSYFYFPSVG----FQKAAGGFGGIRILSRPLIPVPFPE--PAGDFTVLIGDWYKANHNKLKS 181 (545)
Q Consensus 108 i~pG~~~~y~~~~~~~~Gt~wYH~H~~----~~~~~Gl~G~liV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~ 181 (545)
|+||++|+|+|++.+++||||||||.+ .|+++||+|+|||++++....+++. ++.|++|+++||+++.++++..
T Consensus 112 i~PG~~~~Y~f~~~~~~GT~WYH~H~~~~t~~q~~~Gl~G~liV~~~~~~~~~lp~~~~~~d~~l~l~d~~~~~~g~~~~ 191 (534)
T 3abg_A 112 TEPGSFKDYYYPNRQSARTLWYHDHAMHITAENAYRGQAGLYMLTDPAEDALNLPSGYGEFDIPMILTSKQYTANGNLVT 191 (534)
T ss_dssp BSSCSCCCEEECCCSSSCEEEEEECCTTCHHHHHHTBCEEEEEEECTTTTTSCTTCCHHHHSCCEEEEEECBCSSSCBCC
T ss_pred CCCCCeEEEEEecCCcceeEEEecCccccchhhhhhcceEEEEEECCcccccCCCccCCcceEEEEEeeeeecCCCceec
Confidence 999999999999766689999999986 5889999999999997654443332 3678999999999886655422
Q ss_pred hhccC-CCCCCCCeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeC-------ceeEEEeecCcc-ceeeEE
Q 009054 182 VLDRG-HRLPSPDGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQG-------HKMKLVEVEGTH-TIQTTY 252 (545)
Q Consensus 182 ~~~~~-~~~~~~~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~g-------h~~~via~DG~~-~~p~~~ 252 (545)
. .+ .....++.++|||+.+ +.++|++ ++|||||||+|+.+.+.|+|++ |+|+|||+||++ .+|+.+
T Consensus 192 ~--~~~~~~~~gd~~lvNG~~~--p~~~v~~-~~~RlRliNa~~~~~~~l~i~~~~~~~~~h~~~vIa~DG~~~~~P~~~ 266 (534)
T 3abg_A 192 T--NGELNSFWGDVIHVNGQPW--PFKNVEP-RKYRFRFLDAAVSRSFGLYFADTDAIDTRLPFKVIASDSGLLEHPADT 266 (534)
T ss_dssp C--TTCSSCCCCSEEEETTEES--CBCBCCS-SEEEEEEEECCSSCCEEEEECCSSSTTCCCCEEEEEETTEEEEEEEEE
T ss_pred c--CCCCccccCceeccCCccC--ceEEecC-cEEEEEEEecCCcceEEEEEecccCcCCCccEEEEEeCCCcccCceEe
Confidence 1 12 1234579999999999 9999998 5999999999999999999987 999999999985 589999
Q ss_pred eEEEEccCceEEEEEEeCCCCc-ceEEEEeecc------cCCccceEEEEEecCCCCCCCCCCCCCCCcccccccccccc
Q 009054 253 SSLDVHVGQSYSVLVTMDQPPQ-DFYIAVSTRF------TNKVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARS 325 (545)
Q Consensus 253 ~~v~l~pgeR~dv~v~~~~~~g-~y~~~~~~~~------~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 325 (545)
++|.|+|||||||+|++++.+| +|+|++.... ........++++|.....+........|
T Consensus 267 ~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~P------------- 333 (534)
T 3abg_A 267 SLLYISMAERYEVVFDFSDYAGKTIELRNLGGSIGGIGTDTDYDNTDKVMRFVVADDTTQPDTSVVP------------- 333 (534)
T ss_dssp SCEEECTTCEEEEEEECSSCTTSEEEEECCCCSSSSCCSCSSSTTTSEEEEEECCCCSSCSCCCCCC-------------
T ss_pred ceEEECCccEEEEEEEcCCCCCceEEEEeccccccccccccCcCCcceeEEEecCCCCcCCCCCCCc-------------
Confidence 9999999999999999997677 6999874311 0112234688888654321000000001
Q ss_pred cccCCCCCCCCCCCCCCCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCC
Q 009054 326 IRTNLTASGPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPT 405 (545)
Q Consensus 326 l~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~ 405 (545)
..+.+.. .|.+ ....++++.|... ...|+|||++|..+..|++
T Consensus 334 --~~L~~~~-~p~~-------~~~~~~~~~~~~~------~~~w~iNG~~f~~~~~p~l--------------------- 376 (534)
T 3abg_A 334 --ANLRDVP-FPSP-------TTNTPRQFRFGRT------GPTWTINGVAFADVQNRLL--------------------- 376 (534)
T ss_dssp --CCCCCCS-CCCC-------CCCCCEEEECSCC------CSTTCCCCBTTBCTTSCCC---------------------
T ss_pred --cccccCC-CCCC-------ccccceEEEEecc------CceeEECCcccCCCCCcce---------------------
Confidence 0111110 0111 1124566666531 1258999999876544431
Q ss_pred CCCccccceEEecCCCcEEEEEEEcCC-CCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEE
Q 009054 406 GGNIYLDTSVMGADFRGFIEIVFQNHE-NIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAI 484 (545)
Q Consensus 406 ~~~~~~~~~~~~~~~g~~v~~~i~N~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~i 484 (545)
+.++.|++++|+|+|.+ .+.||||||||+||||+++.|.+.. ...++.+ .|||||.|+|+++++|
T Consensus 377 ----------~~v~~G~~~~w~i~N~~~~~~HP~HLHG~~F~Vl~~~~g~~~~---~~~~~~~-~~rDTV~v~pg~~v~I 442 (534)
T 3abg_A 377 ----------ANVPVGTVERWELINAGNGWTHPIHIHLVDFKVISRTSGNNAR---TVMPYES-GLKDVVWLGRRETVVV 442 (534)
T ss_dssp ----------CEECTTCEEEEEEEECSSSCCCCEEESSCCEEEEEESSCCSSS---CCCSGGG-SCBSEECCCSSEEEEE
T ss_pred ----------eeccCCCEEEEEEEcCCCCCCcCEEECCeeEEEEEEcCCCCcC---cCCcccc-CCcCeEEcCCCCEEEE
Confidence 24678999999999987 4699999999999999996553321 1245556 8999999999999999
Q ss_pred EEE-eCCccceeeeecchhhhhcceEEEEEEeCCC
Q 009054 485 YVA-LDNVGMWNVRSEFWARQYLGQQFYLRVYSPV 518 (545)
Q Consensus 485 rf~-adnpG~w~~HCHil~H~d~GMm~~~~V~~~~ 518 (545)
||+ +||||.|||||||++|++.|||..|.|...+
T Consensus 443 ~~~~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~ 477 (534)
T 3abg_A 443 EAHYAPFPGVYMFHCHNLIHEDHDMMAAFNATVLP 477 (534)
T ss_dssp EEECCSCCEEEEEEESCHHHHHTTCEEEEEECSSC
T ss_pred EEEECCCCccEEEecChHHHHhcCCceEEEEEecc
Confidence 998 8999999999999999999999999998765
No 12
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=100.00 E-value=6.4e-84 Score=684.28 Aligned_cols=408 Identities=21% Similarity=0.226 Sum_probs=317.9
Q ss_pred hcCCCeEEEEEEEEEEEecC-CCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCc
Q 009054 25 RAESPYRFFTWNVTYGDIYP-LGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYG 103 (545)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~~~-dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~ 103 (545)
.+.+++++|+|++++.++++ +|..+.+|+|||++|||+||+++||+|+|+|+|+|+++|+|||||+++ ++++||+|
T Consensus 45 ~~~~~~~~~~L~~~~~~~~~~~G~~~~~~~~NG~~PGPtIr~~~Gd~v~v~v~N~l~~~tsiHwHGl~~--~~~~DG~p- 121 (481)
T 3zx1_A 45 SKEKNIFHATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPV--PPDQDGSP- 121 (481)
T ss_dssp CCSTTEEEEEEEEEEEEECCSTTCCEEEEEETTBSSCCBEEEETTCEEEEEEEECSSSCBCCEEETCCC--CGGGSCCT-
T ss_pred ccCCCeEEEEEEEEEEEEEccCCcEEEEEEECCCCCCceEEEECCcEEEEEEEeCCCCCeeEEecCccc--CCccCCCc-
Confidence 35678899999999999996 699999999999999999999999999999999999999999999987 46899998
Q ss_pred cCCcCCCCCeEEEEEEeCCc-ceeeeeecCc----hhhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchhh
Q 009054 104 TTCPIPPGKNFTYILQVKDQ-IGSYFYFPSV----GFQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHNK 178 (545)
Q Consensus 104 ~q~~i~pG~~~~y~~~~~~~-~Gt~wYH~H~----~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~ 178 (545)
||+|+||++|+|+|+++++ +||||||||. ..|+++||+|+|||++++....++ +.++ ++++||+++.+++
T Consensus 122 -q~~I~PG~s~~Y~f~~~~~~~GT~WYH~H~~~~t~~q~~~GL~G~lIV~~~~~~~~~~---~~~~-l~l~D~~~~~~g~ 196 (481)
T 3zx1_A 122 -HDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHL---KEKD-LMISDLRLDENAQ 196 (481)
T ss_dssp -TSCBCTTCEEEEEEECCTTCCEEEEEECCCTTTHHHHHHTTCCEEEEEECSSCTTTTS---EEEE-EEEEEECCBTTSC
T ss_pred -cCcCCCCCeEEEEEeCCCCCCceEEEeecCCCcchhhhhccceEEEEEcCccccccCC---Ccee-EEEEEEeccCCCc
Confidence 9999999999999997543 7999999997 489999999999999976543333 4455 9999999987654
Q ss_pred HHHh-hccCCCCCCCCeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccc-eeeEEeEEE
Q 009054 179 LKSV-LDRGHRLPSPDGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHT-IQTTYSSLD 256 (545)
Q Consensus 179 ~~~~-~~~~~~~~~~~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~-~p~~~~~v~ 256 (545)
+... .........++.++|||+.+ |.++|++|+ ||||||+|+.+.+.|+|+||+|+|||+||.++ +|+.++++.
T Consensus 197 ~~~~~~~~~~~g~~gd~~lvNG~~~--p~l~v~~g~--RlRliNa~~~~~~~l~i~g~~~~vIa~DGg~~~~P~~~~~l~ 272 (481)
T 3zx1_A 197 IPNNNLNDWLNGREGEFVLINGQFK--PKIKLATNE--RIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKTIYKEELF 272 (481)
T ss_dssp CCCCCHHHHHHCCCCSEEEETTEES--CEEEEETTE--EEEEEECCSSCCEEEEETTCEEEEEEETTEEEEEEEEESSEE
T ss_pred cccccchhhccCCcCCEEEECCccC--ceEEecCCC--EEEEEecCCCeEEEEEECCCceEEEEcCCCccCCceEeCeEE
Confidence 3200 00000123578999999999 999999998 99999999999999999999999999998765 899999999
Q ss_pred EccCceEEEEEEeCCCCcceEEEEeecccC-----CccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCC
Q 009054 257 VHVGQSYSVLVTMDQPPQDFYIAVSTRFTN-----KVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLT 331 (545)
Q Consensus 257 l~pgeR~dv~v~~~~~~g~y~~~~~~~~~~-----~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~ 331 (545)
|+|||||||+|+++ .++.|.+.+...... .......++++..... ...+|. .+.
T Consensus 273 l~pgeR~dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~lP~------------------~l~ 331 (481)
T 3zx1_A 273 LSPASRVEVLIDAP-KDGNFKLESAYYDRDKMMVKEEPNTLFLANINLKKE--NVELPK------------------NLK 331 (481)
T ss_dssp ECTTCEEEEEEECS-SCEEEEEEECCCCCCCSSCCCCCCCEEEEEEEEECC--CCCCCS------------------CSC
T ss_pred ECCccEEEEEEEcC-CCcEEEEEEecccccCccccCCCCceeEEEEecCCC--CccCCc------------------ccc
Confidence 99999999999999 578899887533210 0112233333321111 011111 111
Q ss_pred CCCCCCCCCCCCCccccccceEEEeeccccccC-----Ce--------EEEEEcceeecCCCCchhhhcccccccccccC
Q 009054 332 ASGPRPNPQGSYHYGLINISRTIKLESSAGQVN-----GK--------QRYAVNSVSFIPADTPLKLADYFKIGGVFRVG 398 (545)
Q Consensus 332 ~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~-----g~--------~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~ 398 (545)
+..+.+ ....++++.|...+.... +. ..|+|||+.|... .|
T Consensus 332 ~~~~~~---------~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~~-~~---------------- 385 (481)
T 3zx1_A 332 IFKPSE---------EPKEFKEIIMSEDHMQMHGMMGKSEGELKIALASMFLINRKSYDLK-RI---------------- 385 (481)
T ss_dssp CCCCCC---------CCCEEEEEEEEECCSTTTTGGGCCHHHHHHHHHTTEEETTBCCCTT-CC----------------
T ss_pred CCCCCC---------CCCcEEEEEEeccchhcccccccccccccccccceeEECCEeCCCC-Cc----------------
Confidence 111111 112456666654221000 01 1399999987522 11
Q ss_pred CCCCCCCCCCccccceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEee--ccCcCCCCCCCCCCCCCCCccceEEe
Q 009054 399 SIQDQPTGGNIYLDTSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGM--NGGVWTPASRNEYNLRDAVSRCTTQV 476 (545)
Q Consensus 399 ~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~--g~g~~~~~~~~~~~~~~p~~rDTv~v 476 (545)
.+.++.|++|+|+|.|.+.+.|||||||++|||+++ ++... ...++.|||||.|
T Consensus 386 ----------------~~~~~~G~~v~w~l~N~~~~~Hp~HlHG~~F~vl~~~~~g~~~--------~~~~~~~kDTv~v 441 (481)
T 3zx1_A 386 ----------------DLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQ--------KAEFRALRDTINV 441 (481)
T ss_dssp ----------------CEEEETTCCEEEEEEECSSSCEEEEETTCCEEEEEEEETTEEE--------ECSSCCEESEEEE
T ss_pred ----------------eEEeCCCCEEEEEEEcCCCCceeEEEeccEEEEEEecccCCCC--------CcccCcccceEEE
Confidence 256789999999999999999999999999999998 43221 2235789999999
Q ss_pred CCCCEEEEEEEeCCccceeeeecchhhhhcceEEEEEEe
Q 009054 477 YPKSWTAIYVALDNVGMWNVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 477 p~~~~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~ 515 (545)
+|+++++|+|+|||||.|||||||++|+|.|||..|+|.
T Consensus 442 ~Pg~~~~i~~~~d~pG~w~~HCHil~H~d~GMm~~~~V~ 480 (481)
T 3zx1_A 442 RPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVK 480 (481)
T ss_dssp CTTCEEEEEECCCSCEEEEEEESSHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEEEEcCCCeeEEEEcCChHHHhcCCceEEEEe
Confidence 999999999999999999999999999999999999996
No 13
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A
Probab=100.00 E-value=1.4e-83 Score=692.60 Aligned_cols=428 Identities=15% Similarity=0.122 Sum_probs=323.8
Q ss_pred CeEEEEEEEEEEEecC--CCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCC----------------------Cce
Q 009054 29 PYRFFTWNVTYGDIYP--LGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPE----------------------PFL 84 (545)
Q Consensus 29 ~~~~~~l~~~~~~~~~--dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~----------------------~~~ 84 (545)
+..+|+|++++...++ ++..+.+|+|||++|||+|||++||+|+|+|+|+|++ +|+
T Consensus 24 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~NG~~PGPtI~~~~Gd~v~v~v~N~L~~~~~~~~~~t~~~~~~~~~~~~~~ts 103 (513)
T 2wsd_A 24 EKTYYEVTMEECTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTV 103 (513)
T ss_dssp SCEEEEEEEEEEEECSSTTSCCEEEEEETTBSSCCBEEEETTCCEEEEEEECCCSSCSSCCCTTSCC-----CCCSCCBC
T ss_pred CceEEEEEEEEeeeeeCCCCCCceEEEECCCccCceEEECCCCEEEEEEEeCCCccccCccccccccccccccCCCCCcE
Confidence 4566999999988765 4578999999999999999999999999999999975 899
Q ss_pred EeeCCccCCCCCCCCCCCc--c-CCcCCCCCeE---EEEEEeCCcceeeeeecCch----hhhhcCeeeEEEEeCCCCCC
Q 009054 85 ISWNGVQQRRNSYEDGVYG--T-TCPIPPGKNF---TYILQVKDQIGSYFYFPSVG----FQKAAGGFGGIRILSRPLIP 154 (545)
Q Consensus 85 iH~HG~~~~~~~~~DGv~~--~-q~~i~pG~~~---~y~~~~~~~~Gt~wYH~H~~----~~~~~Gl~G~liV~~~~~~~ 154 (545)
|||||+++. +.+||+|+ + ||+|+||++| +|+|++.+++||||||||.+ .|+++||+|+|||+++.+..
T Consensus 104 iHwHGl~~~--~~~DG~p~~~i~~g~i~pG~~f~~~~Y~f~~~~~~GT~wYH~H~~~~t~~q~~~Gl~G~liV~~~~~~~ 181 (513)
T 2wsd_A 104 VHLHGGVTP--DDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKR 181 (513)
T ss_dssp EEEETCCCC--GGGSCCTTSCBCGGGSSBCTTCCCSEEEECCCSCCEEEEEEECCTTTHHHHHHHTCEEEEEEECGGGGG
T ss_pred EEcCCCcCC--CccCCCCcccccCCcccCCCccceEEEEEecCCCccceEECCCCCCcchhhhhccCeEEEEEecccccc
Confidence 999999885 67999996 5 8999999555 99999766799999999996 48999999999999976543
Q ss_pred CCCCCCCCcceEEEeeeeecchhhHHHhhc-----------cCCCCCCCCeEEEcccCCCCceEEEeCCcEEEEEEEecC
Q 009054 155 VPFPEPAGDFTVLIGDWYKANHNKLKSVLD-----------RGHRLPSPDGILINGHGSNGASFTVEQGKTYRFRISNVG 223 (545)
Q Consensus 155 ~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~liNG~~~~~~~~~v~~G~~~rlRliNa~ 223 (545)
.+++.+++|++|+|+||+++.++++..... .......++++||||+.+ +.++|++| +|||||||+|
T Consensus 182 ~~lp~~d~d~~l~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~--p~~~v~~~-~~RlRliNa~ 258 (513)
T 2wsd_A 182 LKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGKVW--PYLEVEPR-KYRFRVINAS 258 (513)
T ss_dssp GCCCCGGGEEEEEEEEEEECTTSCEECCSSCSSCCTTSCSSCCCSCCCCSEEEETTEES--CEEECCSS-EEEEEEEECC
T ss_pred ccCCCCCCcEEEEEEeeecCCCCceecccccccccccccccccccccccceEEECCccc--ceEEecCC-EEEEEEEccC
Confidence 344455889999999999987654422110 001234679999999999 99999985 8999999999
Q ss_pred CCCeeeEEEeCc-eeEEEeecCccc-eeeEEeEEEEccCceEEEEEEeCCCCcceEEEEeeccc--C-CccceEEEEEec
Q 009054 224 LQHSLNFRIQGH-KMKLVEVEGTHT-IQTTYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTRFT--N-KVLTSTGTLHYS 298 (545)
Q Consensus 224 ~~~~~~~~i~gh-~~~via~DG~~~-~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~~~--~-~~~~~~ail~y~ 298 (545)
+.+.+.|+|+|| +|+|||+||+++ +|+.++++.|+|||||||+|++++.+|.+......... . ......++++|.
T Consensus 259 ~~~~~~~~i~~~~~~~via~DG~~~~~P~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~~~~~~~~il~~~ 338 (513)
T 2wsd_A 259 NTRTYNLSLDNGGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIIIDFTAYEGESIILANSAGCGGDVNPETDANIMQFR 338 (513)
T ss_dssp SSCCEEEEETTCCCEEEEEETTEEEEEEEEESEEEECTTCEEEEEEECGGGTTCEEEEEECCCSSSSCCTTTTTEEEEEE
T ss_pred CcceEEEEECCCCeEEEEccCCCcccCceEeCeEEECCeeeEEEEEECCCCCCcEEEEEecccccccCCCCCCcceEEEE
Confidence 999999999999 999999999998 79999999999999999999999767874332221111 0 112345788887
Q ss_pred CCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCccccccceEEEeeccccccCCeEEEEEcceeecC
Q 009054 299 NSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIP 378 (545)
Q Consensus 299 ~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~ 378 (545)
.............|. .+......+ ......++++.|...+. ..+...|+|||++|..
T Consensus 339 ~~~~~~~~~~~~~p~---------------~l~~~~~~~-------~~~~~~~~~~~l~~~~~-~~g~~~~~iNg~~~~~ 395 (513)
T 2wsd_A 339 VTKPLAQKDESRKPK---------------YLASYPSVQ-------HERIQNIRTLKLAGTQD-EYGRPVLLLNNKRWHD 395 (513)
T ss_dssp CCSCCSSCCCCCCCS---------------BCSCCGGGC-------CCCEEEEEEEEEEEEEC-TTSCEEEEETTBCTTS
T ss_pred eccCcccCccCCCCc---------------cccCCCCcc-------cCCCcceEEEEEEeecC-CCCCceEeECCccCCC
Confidence 543111000001110 010000001 01113456666665332 1355679999998753
Q ss_pred CCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccC---cC
Q 009054 379 ADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGG---VW 455 (545)
Q Consensus 379 ~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g---~~ 455 (545)
+ . .+.++.|++++|+|+|.+.+.||||||||+||||+++.+ .|
T Consensus 396 ~---~-------------------------------~~~~~~g~~~~w~l~N~~~~~HP~HlHG~~F~Vl~~~~~~~~~~ 441 (513)
T 2wsd_A 396 P---V-------------------------------TETPKVGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPFDIARY 441 (513)
T ss_dssp C---C-------------------------------CBCCBTTCEEEEEEEECSSSCEEEEESSCCEEEEEEEEBCHHHH
T ss_pred c---c-------------------------------cEecCCCCEEEEEEEcCCCCCcCEeEeCceEEEEEecCcccccc
Confidence 2 1 134678999999999999999999999999999999752 22
Q ss_pred CCCCC-------CCCCCCCCCccceEEeCCCCEEEEEEEe-CCccceeeeecchhhhhcceEEEEEEeCCC
Q 009054 456 TPASR-------NEYNLRDAVSRCTTQVYPKSWTAIYVAL-DNVGMWNVRSEFWARQYLGQQFYLRVYSPV 518 (545)
Q Consensus 456 ~~~~~-------~~~~~~~p~~rDTv~vp~~~~v~irf~a-dnpG~w~~HCHil~H~d~GMm~~~~V~~~~ 518 (545)
++... ......++.|||||.|+|+++++|+|++ ||||.|||||||++|++.|||..|+|.+++
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~rDTv~v~pg~~~~i~~~f~dnpG~w~~HCHil~H~~~GMm~~~~V~~~~ 512 (513)
T 2wsd_A 442 QESGELSYTGPAVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVWHCHALEHEDYDMMRPMDITDPH 512 (513)
T ss_dssp HHHCCCCBSSCCBCCCGGGSSCBSEEEECTTEEEEEEEECCSCCEEEEEEESCHHHHTTTCEEEEEEBCC-
T ss_pred cccccccccCCCCCCCccccCcccEEEeCCCCEEEEEEEecCCCCCEEEEcCChhhhhcCCceeEEEeCCC
Confidence 21100 0112234569999999999999999999 899999999999999999999999997643
No 14
>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus}
Probab=100.00 E-value=8.4e-82 Score=697.19 Aligned_cols=441 Identities=14% Similarity=0.083 Sum_probs=310.7
Q ss_pred CCeEEEEEEEEEEEec--CCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCC-----------------------
Q 009054 28 SPYRFFTWNVTYGDIY--PLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEP----------------------- 82 (545)
Q Consensus 28 ~~~~~~~l~~~~~~~~--~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~----------------------- 82 (545)
...+.|+|++++...+ +++..+.+|+|||++|||+|||++||+|+|+|+|+|+++
T Consensus 30 ~~~~~~~i~~~~~~~~~~~~~~~t~~~gyNg~~PGPti~~~~Gd~v~v~~~N~L~~~~~~h~hg~~~~~~~~~~~~~~~~ 109 (612)
T 3gyr_A 30 EVTRETEIALRPTWVRLHPQLPPTLMWGYDGQVPGPTIEVRRGQRVRIAWTNRIPKGSEYPVTSVEVPLGPPGTPAPNTE 109 (612)
T ss_dssp CTTBCEEEEEEEEEECSCTTSCCEEEEEETTBSSCCEEEEETTCCEEEEEEECCCTTCCCSEEEEEECCCSTTSCCGGGS
T ss_pred CCcceEEEEEEEEEEeecCCCCcceEEEECCcccCcEEEEeCCcEEEEEEEECCCCCcccccccccccCCCCCCcccccc
Confidence 4567889999888765 456788999999999999999999999999999999654
Q ss_pred ------------------ceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCch----hhhhcC
Q 009054 83 ------------------FLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVG----FQKAAG 140 (545)
Q Consensus 83 ------------------~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~----~~~~~G 140 (545)
|+|||||+++. +.+||++ ||+|+||++|+|+|++.+++||||||||.+ .|+++|
T Consensus 110 ~~~~~~~~~~~~~~~~~~ttiHwHGl~~~--~~~DGv~--q~~I~PG~~~~Y~f~~~q~~GT~WYHsH~~g~t~~q~~~G 185 (612)
T 3gyr_A 110 PGRGGVEPNKDVAALPAWSVTHLHGAQTG--GGNDGWA--DNAVGFGDAQLSEYPNDHQATQWWYHDHAMNITRWNVMAG 185 (612)
T ss_dssp CSCTTCCCCHHHHTCCCCBCEEEETCCCC--TTTSCCG--GGCBCTTCEEEEEECCCSCSEEEEEEECCTTTHHHHTTTT
T ss_pred ccccccccccccccCCCCceEEcCCCccC--CcccCcc--cCccCCCCCEEEEEEcCCCCceEEEeeCCCCcchhhhhcc
Confidence 67899999874 6799988 999999999999999766689999999974 799999
Q ss_pred eeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchhhHHHhh---------cc--------CCCCCCCCeEEEcccCCC
Q 009054 141 GFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHNKLKSVL---------DR--------GHRLPSPDGILINGHGSN 203 (545)
Q Consensus 141 l~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~---------~~--------~~~~~~~~~~liNG~~~~ 203 (545)
|+|+|||+++++...+.+.+++|++|+|+||+++.+.+..... .. ......++.++|||+.+
T Consensus 186 l~G~liI~d~~~~~~~~p~~d~e~~lvl~Dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~vNG~~~- 264 (612)
T 3gyr_A 186 LYGTYLVRDDEEDALGLPSGDREIPLLIADRNLDTDEDGRLNGRLLHKTVIVQQSNPETGKPVSIPFFGPYTTVNGRIW- 264 (612)
T ss_dssp CEEEEEEECHHHHTTTCCCGGGEEEEEEEEECEEECTTSCEEEEEEEEEEEEESSCSSSSCCEECCCCCSEEEETTEES-
T ss_pred ceeEEEEcCccccccCCCCCCccEEEEEEEEecccccccccccccccCCccccccCCCCCCccccCccCceeeecCCcc-
Confidence 9999999987655555556789999999999987554321110 00 01123568999999999
Q ss_pred CceEEEeCCcEEEEEEEecCCCCeeeEEEeCc-------eeEEEeecCccc-eeeEE------eEEEEccCceEEEEEEe
Q 009054 204 GASFTVEQGKTYRFRISNVGLQHSLNFRIQGH-------KMKLVEVEGTHT-IQTTY------SSLDVHVGQSYSVLVTM 269 (545)
Q Consensus 204 ~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh-------~~~via~DG~~~-~p~~~------~~v~l~pgeR~dv~v~~ 269 (545)
|.+.++. ++|||||||+|+.+.+.|+|++| +|+|||+||+++ +|+.+ ++|.|+|||||||+|++
T Consensus 265 -p~~~v~~-~~yRlRliNas~~~~~~l~i~~h~~~~~~~~~~vIa~DG~~l~~Pv~v~~p~~~~~l~i~pGeRydVlV~~ 342 (612)
T 3gyr_A 265 -PYADVDD-GWYRLRLVNASNARIYNLVLIDEDDRPVPGVVHQIGSDGGLLPRPVPVDFDDTLPVLSAAPAERFDLLVDF 342 (612)
T ss_dssp -CEEEEES-SEEEEEEEECCSSCCEEEEEECTTSCBCTTSEEEEEETTEEEEEEEEECSSSSSSSEEECTTCEEEEEEEC
T ss_pred -ceEeccC-cEEEEEEEeccCCcceeEEEccCCCccCCceEEEEEeCCCccccceeccCcccccEEEeccceEEEEEEEC
Confidence 9999986 58999999999999999999998 499999999998 46655 47999999999999999
Q ss_pred CCCCcceEEEEeecccC--------CccceEEEEEecCCCC--CCCCCCCCCCCcccc---cccccccccccCCCCCCCC
Q 009054 270 DQPPQDFYIAVSTRFTN--------KVLTSTGTLHYSNSAH--PVSGPVPGGPTTQID---WSLNQARSIRTNLTASGPR 336 (545)
Q Consensus 270 ~~~~g~y~~~~~~~~~~--------~~~~~~ail~y~~~~~--~~~~~~p~~p~~~~~---~~~~~~~~l~~~l~~~~~~ 336 (545)
++.+|.++......... .......+++|..... +....+|........ .......... .+..
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~---- 417 (612)
T 3gyr_A 343 RALGGRRLRLVDKGPGAPAGTPDPLGGVRYPEVMEFRVRETCEEDSFALPEVLSGSFRRMSHDIPHGHRLI-VLTP---- 417 (612)
T ss_dssp TTCTTCEEEEEECCTTSCTTSCBGGGTBSCCEEEEEEEECCSCCCCCCCCSSCCSSCCCCCTTSCCEEEEE-EEEC----
T ss_pred CCCCceEEEEEecCCcCCcCccCccccccccceeeecccCCCCCCcccccccccccccccccccccccccc-cccc----
Confidence 98777655544322111 0122345666643321 111111111000000 0000000000 0000
Q ss_pred CCCCCCCCccccccceEEEeecccc----------------ccCCeEEEEEcceeecCCCCchhhhcccccccccccCCC
Q 009054 337 PNPQGSYHYGLINISRTIKLESSAG----------------QVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSI 400 (545)
Q Consensus 337 p~p~~~~~~~~~~~~~~~~l~~~~~----------------~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~ 400 (545)
+.... .......+.+..... .......|.+|+..|
T Consensus 418 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~------------------------ 468 (612)
T 3gyr_A 418 PGTKG-----SGGHPEIWEMAEVEDPADVQVPAEGVIQVTGADGRTKTYRRTARTF------------------------ 468 (612)
T ss_dssp TTCTT-----TTTCCEEEEEEECC-----CCSCTTEEEEECTTSCEEEEEEEECST------------------------
T ss_pred ccccc-----ccccccccccccccccccccccccceeeeccCCCccccccccCccC------------------------
Confidence 00000 000000000000000 000111222332221
Q ss_pred CCCCCCCCccccceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCC----------------CCCCC
Q 009054 401 QDQPTGGNIYLDTSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPAS----------------RNEYN 464 (545)
Q Consensus 401 ~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~----------------~~~~~ 464 (545)
.....+.++.|++|+|+|+|.+.+.||||||||+||||+++.+.+.... ....+
T Consensus 469 ----------~~~~~~~~~~g~~~~w~i~N~~~~~HP~HLHG~~F~Vl~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (612)
T 3gyr_A 469 ----------NDGLGFTIGEGTHEQWTFLNLSPILHPMHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLDPDTPVPLA 538 (612)
T ss_dssp ----------TSCCCEEEETTCEEEEEEEECSSSCEEEEESSCEEEEEEEEEEECTTEETTTTEESSCEEEEEEEECCCC
T ss_pred ----------CCCcceEeCCCCEEEEEEEcCCCCCcCEeECCCcEEEEeecCCcCccccccccccccccccccccccCcc
Confidence 2233467889999999999999999999999999999998754332110 11245
Q ss_pred CCCCCccceEEeCCCCEEEEEEE-eCCccceeeeecchhhhhcceEEEEEEeCCCc
Q 009054 465 LRDAVSRCTTQVYPKSWTAIYVA-LDNVGMWNVRSEFWARQYLGQQFYLRVYSPVE 519 (545)
Q Consensus 465 ~~~p~~rDTv~vp~~~~v~irf~-adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~ 519 (545)
..++.|||||.|+++++++|||+ +||||.||||||||+|||.|||+.|+|++|+.
T Consensus 539 ~~~~~~kDTv~v~~~~~v~i~~rfadnpG~w~~HCHil~Hed~GMM~~f~V~~p~~ 594 (612)
T 3gyr_A 539 PNELGHKDVFQVPGPQGLRVMGKFDGAYGRFMYHCHLLEHEDMGMMRPFVVMPPEA 594 (612)
T ss_dssp TTCSSCBSEEEECSSEEEEEEEECCSCCEEEEEEESSHHHHHTTCEEEEEEECHHH
T ss_pred cccCCCCcEEEECCCCEEEEEEEeCCCCcceEEcCCChHHHhCcCCcceEEeCCcc
Confidence 67789999999999999999998 69999999999999999999999999998863
No 15
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=100.00 E-value=1.5e-82 Score=672.56 Aligned_cols=382 Identities=17% Similarity=0.233 Sum_probs=299.9
Q ss_pred EEEcCc-ccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeee
Q 009054 52 ILINGQ-FPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYF 130 (545)
Q Consensus 52 ~~~ng~-~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH 130 (545)
|+|||+ +|||+||+++||+|+|+|+|+|+++|+|||||+++. +++||+|+ |+|+||++|+|+|++++++||||||
T Consensus 28 ~~~Ng~~~pGP~i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~--~~~DG~~~--~~i~PG~~~~Y~f~~~~~~GT~wYH 103 (448)
T 3aw5_A 28 SGYMAEGVLNPTIILRRGQRVDMTLKNKLTEPTIVHWHGFDVN--WHNDAHPS--FAITPGESYNYSFDVVNRAGTYLYH 103 (448)
T ss_dssp TEEEETTEESCEEEEETTCEEEEEEEECSSSCBCEEEETCCCC--HHHHTCGG--GCBCTTCEEEEEEECCSCSEEEEEE
T ss_pred EEECCccccCceEEEeCCCEEEEEEEECCCCceeEEeCCccCC--CccCCCCC--ccCCCCCEEEEEEEcCCCCCceEec
Confidence 999999 999999999999999999999999999999999885 57999996 9999999999999986589999999
Q ss_pred cC----chhhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchhhHHHhh--ccCCCCCCCCeEEEcccCCCC
Q 009054 131 PS----VGFQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHNKLKSVL--DRGHRLPSPDGILINGHGSNG 204 (545)
Q Consensus 131 ~H----~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~liNG~~~~~ 204 (545)
|| ...|+++||+|+|||++++.. .+++...+|++|+++||+++. +++.... ........++.++|||+..
T Consensus 104 ~H~~~~~~~q~~~Gl~G~liV~~~~~~-~~l~~d~~e~~l~l~D~~~~~-~~~~~~~~~~~~~~~~~~~~~liNG~~~-- 179 (448)
T 3aw5_A 104 PHPHGLTAKQFYMGQLGLVIVEDSGSD-LGFKYGVNDLPLVISDRRFIG-GAPVYNPTPMEMIAGFLGNAVLVNGVKD-- 179 (448)
T ss_dssp ECCTTTHHHHHHTTCCEEEEEECTTTT-TTCCBTTTEEEEEEEEEEEET-TEEECCCCHHHHHHCCCCSEEEETTEET--
T ss_pred cCCCCchHHHHhccceEEEEEeCCccc-cCCCCCCceEEEEEEeeccCC-CcccccccccccccCccccEEEECCccc--
Confidence 99 568999999999999997643 222222389999999999987 5432200 0011224679999999999
Q ss_pred ceEEEeCCcEEEEEEEecCCCCeeeEEE--eC---ceeEEEeecCccce-eeEEeEEEEccCceEEEEEEeCCCCcceEE
Q 009054 205 ASFTVEQGKTYRFRISNVGLQHSLNFRI--QG---HKMKLVEVEGTHTI-QTTYSSLDVHVGQSYSVLVTMDQPPQDFYI 278 (545)
Q Consensus 205 ~~~~v~~G~~~rlRliNa~~~~~~~~~i--~g---h~~~via~DG~~~~-p~~~~~v~l~pgeR~dv~v~~~~~~g~y~~ 278 (545)
+.++|++| +|||||||+|+.+.+.|+| +| |+|+|||+||++++ |+.++++.|+|||||||+|+++ .+.|+|
T Consensus 180 p~~~v~~g-~~RlRliNa~~~~~~~~~i~~~~~~~~~~~via~DG~~~~~P~~~~~l~l~pgeR~dvlv~~~--~~~y~l 256 (448)
T 3aw5_A 180 AVFKLSGG-SYRLRLVNGSNARLYMLSIVKKNGDVVPMRLIAVDQGFLARPIEVRALFLAPAERAEVVVELG--EGVYLL 256 (448)
T ss_dssp CEEEEEEE-EEEEEEEECSSSCCEEEEEEETTSCEECEEEEEETTEEEEEEEEESCEEECTTCEEEEEEEEC--SEEEEE
T ss_pred ceEEECCC-eEEEEEEcCCCcceEEEEEEcCCCCCccEEEEEeCCCccCCceEeceEEECCcceEEEEEECC--CCceEE
Confidence 99999999 9999999999999999999 99 99999999999998 9999999999999999999998 378999
Q ss_pred EEeecccC--------------CccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCC
Q 009054 279 AVSTRFTN--------------KVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTASGPRPNPQGSYH 344 (545)
Q Consensus 279 ~~~~~~~~--------------~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~ 344 (545)
++...... ......++++|.+....+ . |. .|....+.+.
T Consensus 257 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-p~---------------~L~~lp~~~~------ 309 (448)
T 3aw5_A 257 KNTPFDPMHLEMGHGMQEALPEGSEYTIATFLVEGKGEAV-----P-VE---------------ALSDPPPEPP------ 309 (448)
T ss_dssp EECCCCCCCCTTSSCCCCSSCTTSCEEEEEEEEEEECCCC-----C-CC---------------CCSCCCCCCC------
T ss_pred EccccccccCccccccccccCCCCCceEEEEEEcCCCCCC-----C-cc---------------ccCCCCCCCC------
Confidence 98754210 112345677776543211 0 10 0110000010
Q ss_pred ccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEe-cCCCcE
Q 009054 345 YGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMG-ADFRGF 423 (545)
Q Consensus 345 ~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~g~~ 423 (545)
....++++.|...+ ..|+|||++|..+ .|. +. ++.|++
T Consensus 310 --~~~~~~~~~l~~~~------~~~~iNg~~~~~~-~p~--------------------------------~~~~~~g~~ 348 (448)
T 3aw5_A 310 --KPTRTRRFALSLSG------MQWTINGMFWNAS-NPL--------------------------------FEHVSVEGV 348 (448)
T ss_dssp --CCSEEEEEEEEEET------TEEEETTBCCCTT-CTT--------------------------------CCCEEECEE
T ss_pred --CCCceEEEEEeCCC------ceeeECCCcCCCC-CCc--------------------------------eeccCCCCe
Confidence 12356777776421 2599999998642 121 23 678999
Q ss_pred EEEEEEcCC-CCCCceeecCCceEEEeeccCcCCC-CCCCC----CCCCCCCccceEEeCCCCEEEEE--EE---eCCcc
Q 009054 424 IEIVFQNHE-NIVQSWHIDGYNFWVVGMNGGVWTP-ASRNE----YNLRDAVSRCTTQVYPKSWTAIY--VA---LDNVG 492 (545)
Q Consensus 424 v~~~i~N~~-~~~HP~HlHG~~F~Vl~~g~g~~~~-~~~~~----~~~~~p~~rDTv~vp~~~~v~ir--f~---adnpG 492 (545)
|+|+|+|.+ .+.||||||||+||||+++ |.+.. ..... .+..++.|||||.|+|+++++|+ |+ +|||
T Consensus 349 v~~~i~N~~~~~~HP~HLHG~~F~Vl~~~-G~~~~~~~~~~~~~~~~p~~~~~rDTv~v~pg~~~~i~vrF~~~~adnp- 426 (448)
T 3aw5_A 349 ELWEIVNDKASMPHPMHLHGFPMWIIERK-DSPRQVAELAVDNRGRLPTDLGLKDTVLIWPGETVKIVVNFDAKKRGQL- 426 (448)
T ss_dssp EEEEEEECSSSCCEEEEESSSCBEEEEEE-SCCHHHHTTCCSTTCCCGGGGSCBSEEEECTTCEEEEEEEECGGGTTCE-
T ss_pred EEEEEEcCCCCCCcCEEECCceEEEEEec-CCCcccccccccccCCCccccCCccEEEeCCCCEEEEEEEecccCCCCc-
Confidence 999999998 8999999999999999995 33320 01111 23445689999999999999665 88 8999
Q ss_pred ceeeeecchhhhhcceEEEEEEe
Q 009054 493 MWNVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 493 ~w~~HCHil~H~d~GMm~~~~V~ 515 (545)
|||||||++|++.|||..|+|.
T Consensus 427 -w~~HCHil~H~d~GMm~~~~V~ 448 (448)
T 3aw5_A 427 -FPFHCHNLEHEDGGMMINIAVK 448 (448)
T ss_dssp -EEEEESSHHHHHTTCEEEEEEC
T ss_pred -EEEEcCChHHHhCCCceEEEeC
Confidence 9999999999999999999983
No 16
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...
Probab=100.00 E-value=9.1e-82 Score=667.38 Aligned_cols=411 Identities=19% Similarity=0.229 Sum_probs=310.6
Q ss_pred CeEEEEEEEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcC
Q 009054 29 PYRFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPI 108 (545)
Q Consensus 29 ~~~~~~l~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i 108 (545)
..++|+|++++++++++|+.+.+|+|||++|||+||+++||+|+|+|+|+|+++++|||||+++. +.+||+| ||+|
T Consensus 16 ~~~~~~l~~~~~~~~~~G~~~~~~~~NG~~pGP~i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~--~~~DG~p--~~~i 91 (488)
T 3od3_A 16 ARNRIQLTIGAGQSTFGGKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVP--GEVDGGP--QGII 91 (488)
T ss_dssp TTSEEEEEEEEEEEEETTEEEEEEEESSSSBCCEEEEETTCEEEEEEEECSSSCBCCEEETCCCC--HHHHCCT--TCCB
T ss_pred CCeeEEEEEEEEEEccCCeEEEEEEECCcCCCCeEEEeCCeEEEEEEEeCCcCceeEeecccccC--cccCCCC--cCcC
Confidence 45789999999999999999999999999999999999999999999999999999999999885 4699998 8999
Q ss_pred CCCCeEEEEEEeCCcceeeeeecCc----hhhhhcCeeeEEEEeCCCCCCCCCC--CCCCcceEEEeeeeecchhhHHHh
Q 009054 109 PPGKNFTYILQVKDQIGSYFYFPSV----GFQKAAGGFGGIRILSRPLIPVPFP--EPAGDFTVLIGDWYKANHNKLKSV 182 (545)
Q Consensus 109 ~pG~~~~y~~~~~~~~Gt~wYH~H~----~~~~~~Gl~G~liV~~~~~~~~~~~--~~~~e~~l~~~d~~~~~~~~~~~~ 182 (545)
+||++|+|+|++.+++||||||||. ..|+++||+|+|||++++....+++ ...+|++++++||+++.++++...
T Consensus 92 ~PG~~~~Y~f~~~~~aGT~wYH~H~~~~t~~q~~~GL~G~liV~~~~~~~~~lp~~y~~~d~~lvl~D~~~~~~g~~~~~ 171 (488)
T 3od3_A 92 PPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIVQDKKFSADGQIDYQ 171 (488)
T ss_dssp CTTCEEEEEEECCSCSEEEEEECCCTTTHHHHHHTTCCEEEEEECHHHHTTCCCCCBTTTEEEEEEEEECBCTTSSBCCC
T ss_pred cCCCeEEEEEecCCCceeEEEEecCCCcchhhhhccceeEEEEcCccccccCCcccCCccceeEEEEEeeecCCCceecc
Confidence 9999999999976568999999997 4799999999999998754332222 235699999999999866543211
Q ss_pred hc--cCCCCCCCCeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEE-eCceeEEEeecCccc-eeeEEeEEEEc
Q 009054 183 LD--RGHRLPSPDGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRI-QGHKMKLVEVEGTHT-IQTTYSSLDVH 258 (545)
Q Consensus 183 ~~--~~~~~~~~~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i-~gh~~~via~DG~~~-~p~~~~~v~l~ 258 (545)
.+ .......++.++|||+.+ |.+.++ |++|||||||+|+.+.+.|+| +||+|+|||+||+++ +|+.+++|.|+
T Consensus 172 ~~~~~~~~g~~gd~~lvNG~~~--p~~~v~-g~~~RlRliNas~~~~~~l~i~dg~~~~vIa~DG~~l~~P~~~~~l~l~ 248 (488)
T 3od3_A 172 LDVMTAAVGWFGDTLLTNGAIY--PQHAAP-RGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVL 248 (488)
T ss_dssp CSHHHHHHCCCCSEEEETTBSS--CEEEEE-EEEEEEEEEECCSSCCEEEEETTCCCEEEEEETTEEEEEEEEESCEEEC
T ss_pred ccccccccCCCCCEEEEcCCcC--ccEecC-CCEEEEEEEccCCCceeeeeecCCCeEEEEEeCCCcccCccEeceEEEC
Confidence 10 001124578999999998 888774 689999999999999999999 699999999999986 89999999999
Q ss_pred cCceEEEEEEeCCCCcceEEEEeecccCC-----ccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCC
Q 009054 259 VGQSYSVLVTMDQPPQDFYIAVSTRFTNK-----VLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTAS 333 (545)
Q Consensus 259 pgeR~dv~v~~~~~~g~y~~~~~~~~~~~-----~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~ 333 (545)
|||||||+|+++ ..+.|.+++....... ......+++......+....+|. .|...
T Consensus 249 pGeR~dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~------------------~L~~~ 309 (488)
T 3od3_A 249 MGERFEVLVEVN-DNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAISASGALPD------------------TLSSL 309 (488)
T ss_dssp TTCEEEEEEEEC-TTCCEEEEECCCSSTTTTSTTTTSCEEEEEEEEEEEECCCCCCS------------------CCCCC
T ss_pred CCCEEEEEEEeC-CCceEEEEEeccCCCCcccccccCccceeEecccccCCCCCCCc------------------ccccC
Confidence 999999999999 4778999875332110 00111222221110000011111 11110
Q ss_pred CCCCCCCCCCCccccccceEEEeeccc-------------------cc----------cCCe-------------EEEEE
Q 009054 334 GPRPNPQGSYHYGLINISRTIKLESSA-------------------GQ----------VNGK-------------QRYAV 371 (545)
Q Consensus 334 ~~~p~p~~~~~~~~~~~~~~~~l~~~~-------------------~~----------~~g~-------------~~~~i 371 (545)
.+.| . .....+|++.|.... .. ..|. ..|+|
T Consensus 310 ~~~~--~-----~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~I 382 (488)
T 3od3_A 310 PALP--S-----LEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGNMNHMNHGGKFDFHHANKI 382 (488)
T ss_dssp CCCC--C-----CTTCCEEEEEEEECHHHHHHHHHHHHHHHGGGGGTTSCHHHHCCCSCCCCCCCSCCCGGGCGGGCEEE
T ss_pred CCCc--c-----cccccceEEEEEecccccccccccccccccccccccccccccccccccCccccccccccccccceeeE
Confidence 0001 0 001234555553210 00 0110 13899
Q ss_pred cceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcEEEEEEEcCC-CCCCceeecCCceEEEee
Q 009054 372 NSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFIEIVFQNHE-NIVQSWHIDGYNFWVVGM 450 (545)
Q Consensus 372 Ng~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~-~~~HP~HlHG~~F~Vl~~ 450 (545)
||++|... .| .+.++.|++++|.|.|.+ .+.|||||||++|+|+++
T Consensus 383 NG~~~~~~-~~--------------------------------~~~~~~G~~e~w~l~N~~~~~~Hp~HlHg~~F~Vl~~ 429 (488)
T 3od3_A 383 NGQAFDMN-KP--------------------------------MFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSE 429 (488)
T ss_dssp TTBCCCTT-CC--------------------------------SEECCBSSCEEEEEECTTCCCCEEEEETTCCBEEEEB
T ss_pred CCeeCCCC-CC--------------------------------ceEcCCCCEEEEEEEeCCCCCCccEEEcCceEEEecc
Confidence 99988532 12 146889999999999988 679999999999999999
Q ss_pred ccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeC----CccceeeeecchhhhhcceEEEEEE
Q 009054 451 NGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALD----NVGMWNVRSEFWARQYLGQQFYLRV 514 (545)
Q Consensus 451 g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~ad----npG~w~~HCHil~H~d~GMm~~~~V 514 (545)
++.... ..++.|||||.|+ +++++|+|++| |||.||||||+|+|||.|||..|+|
T Consensus 430 ~g~~~~--------~~~~~~kDTV~v~-g~~~~i~~~f~~~~~~~G~~m~HCH~l~Hed~GMm~~f~V 488 (488)
T 3od3_A 430 NGKPPA--------AHRAGWKDTVKVE-GNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 488 (488)
T ss_dssp TTBCCC--------GGGSSSBSEEEES-SSEEEEEECBCSCCCGGGCEEEEESSHHHHHTTCEEEEEC
T ss_pred CCCccc--------cccCCceeEEEeC-CCEEEEEEEeccCCCCCCCEEEeCCchHHHhcCCcEEEEC
Confidence 653321 2346799999999 99999999985 5789999999999999999999986
No 17
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase, multicopper oxidase, hexamer; 2.30A {Streptomyces antibioticus} PDB: 3gyr_A
Probab=100.00 E-value=1.2e-79 Score=666.95 Aligned_cols=441 Identities=15% Similarity=0.113 Sum_probs=318.5
Q ss_pred CCeEEEEEEEEEEEecC--CCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCC-----------------------
Q 009054 28 SPYRFFTWNVTYGDIYP--LGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEP----------------------- 82 (545)
Q Consensus 28 ~~~~~~~l~~~~~~~~~--dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~----------------------- 82 (545)
.+.++|+|++++....+ ++..+.+|+|||++|||||+|++||+|+|+++|+|++.
T Consensus 30 ~~~~~~~l~~~~~~~~l~~~~~~t~~~~ynG~~PGPtI~~~~Gd~v~V~~~N~L~~~~~~~~~~~~~p~~~~g~p~~~~~ 109 (612)
T 2g23_A 30 EVTRETEIALRPTWVRLHPQLPPTLMWGYDGQVPGPTIEVRRGQRVRIAWTNRIPKGSEYPVTSVEVPLGPPGTPAPNTE 109 (612)
T ss_dssp CTTBCEEEEEEEEEECSCTTSCCEEEEEETTBSSCCEEEEETTCCEEEEEEECCCTTCCCSEEEEEECCCSTTSCCGGGS
T ss_pred CCeEEEEEEEEEEEEEECCCCcceEEEEECCccCCceEEEECCeEeeEEEEECcCCcccccccccccccccCCCcccccc
Confidence 45688999999998875 45689999999999999999999999999999999753
Q ss_pred ------------------ceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCch----hhhhcC
Q 009054 83 ------------------FLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVG----FQKAAG 140 (545)
Q Consensus 83 ------------------~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~----~~~~~G 140 (545)
+++||||+++. +.+||++ ||+|+||++|+|+|++.+++||||||||.+ .|+++|
T Consensus 110 p~~~g~~~~~~~~~~~~~tsiH~HG~~~~--~~~DG~p--~~~i~PG~s~~Y~f~~~~~aGT~wYH~H~~~~t~~q~~~G 185 (612)
T 2g23_A 110 PGRGGVEPNKDVAALPAWSVTHLHGAQTG--GGNDGWA--DNAVGFGDAQLSEYPNDHQATQWWYHDHAMNITRWNVMAG 185 (612)
T ss_dssp CSCTTCCCCHHHHTCCCCBCEEEETCCCC--TTTSCCG--GGCBCTTCEEEEEECCCSCSCEEEEEECCTTTHHHHTTTT
T ss_pred cccccccccccccccCCceEEEcCCCCCC--CccCCCC--cCCCCCCCeEEEEEEecCCCceEEEecccCCcchhhhhcc
Confidence 89999999885 4699988 899999999999999756799999999997 499999
Q ss_pred eeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchhh--HHH-------hhcc---C-C----CCCCCCeEEEcccCCC
Q 009054 141 GFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHNK--LKS-------VLDR---G-H----RLPSPDGILINGHGSN 203 (545)
Q Consensus 141 l~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~--~~~-------~~~~---~-~----~~~~~~~~liNG~~~~ 203 (545)
|+|+|||++++....+++.+++|++|+|+||+++.+.+ +.. +.+. + . ....++.+||||+.+
T Consensus 186 L~G~liV~~~~~~~~~lp~~d~d~~l~l~Dw~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~p~~~~~~gd~~lVNG~~~- 264 (612)
T 2g23_A 186 LYGTYLVRDDEEDALGLPSGDREIPLLIADRNLDTDEDGRLNGRLLHKTVIVQQSNPETGKPVSIPFFGPYTTVNGRIW- 264 (612)
T ss_dssp CEEEEEEECHHHHTTTCCCGGGEEEEEEEEECEEECTTSCEEEEEEEEEEEEESSCSSSSCCEECCCCCSEEEETTEES-
T ss_pred ceeEEEEcCcccccccCCCCcceEEEEEEEEeccCCcccccccccccccccccccccccCcccccCCcCCEEEECCccC-
Confidence 99999999975444444456999999999999985432 110 0010 1 0 124679999999999
Q ss_pred CceEEEeCCcEEEEEEEecCCCCeeeEEEeCc-------eeEEEeecCccc-eeeEEe------EEEEccCceEEEEEEe
Q 009054 204 GASFTVEQGKTYRFRISNVGLQHSLNFRIQGH-------KMKLVEVEGTHT-IQTTYS------SLDVHVGQSYSVLVTM 269 (545)
Q Consensus 204 ~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh-------~~~via~DG~~~-~p~~~~------~v~l~pgeR~dv~v~~ 269 (545)
|.++|++| +|||||||+|+.+.+.|+|++| +|+|||+||+++ +|+.++ +|.|+|||||||+|++
T Consensus 265 -p~~~V~~g-~yRlRliNas~~r~~~l~i~~h~g~~~~~~~~vIa~DG~~l~~P~~~~~~~~~~~l~l~pgeR~dvlVd~ 342 (612)
T 2g23_A 265 -PYADVDDG-WYRLRLVNASNARIYNLVLIDEDDRPVPGVVHQIGSDGGLLPRPVPVDFDDTLPVLSAAPAERFDLLVDF 342 (612)
T ss_dssp -CEEEEESS-EEEEEEEECCSSCCEEEEEECTTSCBCTTSEEEEEETTEEEEEEEEECSSSSSSSEEECTTCEEEEEEEC
T ss_pred -CeEEecCC-eEEEEEEecCCCeEEEEEEcCCCCccCCCcEEEEEeCCeEccCCEEecccCcccEEEECCcCeEEEEEEC
Confidence 99999999 9999999999999999999999 899999999999 599999 9999999999999999
Q ss_pred CCCCc-ceEEEEeecccCC-------ccceEEEEEecCCCC--CCCCCCCCCCCcccc-ccccccccccc-CCCCCCCCC
Q 009054 270 DQPPQ-DFYIAVSTRFTNK-------VLTSTGTLHYSNSAH--PVSGPVPGGPTTQID-WSLNQARSIRT-NLTASGPRP 337 (545)
Q Consensus 270 ~~~~g-~y~~~~~~~~~~~-------~~~~~ail~y~~~~~--~~~~~~p~~p~~~~~-~~~~~~~~l~~-~l~~~~~~p 337 (545)
++.+| +|+|+........ ......++++..... ..+..+|..-..... .........+. .+.+ |
T Consensus 343 ~~~~g~~~~L~~~~~~~~~g~~~~~~~~~~~~vm~f~V~~~~~~~~~~~P~~L~~~~~~l~~~~~~~~r~~~~~~----~ 418 (612)
T 2g23_A 343 RALGGRRLRLVDKGPGAPAGTPDPLGGVRYPEVMEFRVRETCEEDSFALPEVLSGSFRRMSHDIPHGHRLIVLTP----P 418 (612)
T ss_dssp TTCTTCEEEEEECCTTSCTTSCBGGGTBSCCEEEEEEEECCSCCCCCCCCSSCCSSCCCCCTTSCCEEEEEEECC----T
T ss_pred CCCCCCEEEEEeCCccCCCCccccccCccccceEEEEEccCCCCCCCCCChhhccccccCCcccccceeEEeecc----c
Confidence 98666 5888765321100 011124555542221 111122210000000 00000000000 0000 0
Q ss_pred CCCCCCCccccccceEEEeeccc---------------cccCC-eEEEEEcceeecCCCCchhhhcccccccccccCCCC
Q 009054 338 NPQGSYHYGLINISRTIKLESSA---------------GQVNG-KQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQ 401 (545)
Q Consensus 338 ~p~~~~~~~~~~~~~~~~l~~~~---------------~~~~g-~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~ 401 (545)
... +.....+.+.+.... ...+| ...|+|||+.|...
T Consensus 419 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iNG~~~~~~---------------------- 471 (612)
T 2g23_A 419 GTK-----GSGGHPEIWEMAEVEDPADVQVPAEGVIQVTGADGRTKTYRRTAATFNDG---------------------- 471 (612)
T ss_dssp TCT-----TSTTCCCEEEEEEEC-----CCSCTTEEEEECTTSCEEEEEEEECSTTSC----------------------
T ss_pred ccc-----ccccccceeeccccccccccccccccceeeeccCCceeEEEECCccCCCC----------------------
Confidence 000 000000111111000 00122 24577888776421
Q ss_pred CCCCCCCccccceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCC----------------CCCCCC
Q 009054 402 DQPTGGNIYLDTSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPAS----------------RNEYNL 465 (545)
Q Consensus 402 ~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~----------------~~~~~~ 465 (545)
..+.++.|++|+|.|.|.+.+.|||||||++|||++++.+.++..+ ....+.
T Consensus 472 ------------~~~~v~~G~~v~w~l~N~~~~~HPiHlHg~~F~Vl~r~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~ 539 (612)
T 2g23_A 472 ------------LGFTIGEGTHEQWTFLNLSPILHPMHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLDPDTPVPLAP 539 (612)
T ss_dssp ------------CCEEEETTCEEEEEEEECSSSCEEEEESSCCEEEEEEEEEECTTEETTTTEESSCEEEEEEEECCCCT
T ss_pred ------------CceEecCCCEEEEEEEeCCCCCCCeEEcCceEEEecccCcccccccccccCcccccccccccccCCCc
Confidence 1256789999999999999999999999999999998643221100 012455
Q ss_pred CCCCccceEEeCCCCEEEEEEEeC-CccceeeeecchhhhhcceEEEEEEeCCC
Q 009054 466 RDAVSRCTTQVYPKSWTAIYVALD-NVGMWNVRSEFWARQYLGQQFYLRVYSPV 518 (545)
Q Consensus 466 ~~p~~rDTv~vp~~~~v~irf~ad-npG~w~~HCHil~H~d~GMm~~~~V~~~~ 518 (545)
.++.|||||.|+|+++++|+|+|+ |||.|||||||++|||.|||..|+|.+.+
T Consensus 540 ~e~~~kDTv~v~Pg~~~~i~~~~~~~pG~w~~HCHil~Hed~GMm~~f~V~p~~ 593 (612)
T 2g23_A 540 NELGHKDVFQVPGPQGLRVMGKFDGAYGRFMYHCHLLEHEDMGMMRPFVVMPPE 593 (612)
T ss_dssp TSSSCBSEEEECSSEEEEEEEECCSCCEEEEEEESSHHHHTTTCEEEEEEECHH
T ss_pred ccccccCeEEECCCcEEEEEEEeCCCCccEEEEeCchhHhhcCCceEEEECchh
Confidence 667899999999999999999999 99999999999999999999999997654
No 18
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=100.00 E-value=2.3e-54 Score=499.54 Aligned_cols=392 Identities=14% Similarity=0.166 Sum_probs=268.6
Q ss_pred hhcCCCeEEEEEEEEEEEec--CCC--------------------------eeEEEE-------EEcCc--------ccC
Q 009054 24 ARAESPYRFFTWNVTYGDIY--PLG--------------------------VRQQGI-------LINGQ--------FPG 60 (545)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~--~dG--------------------------~~~~~~-------~~ng~--------~pg 60 (545)
..+.+.+|+|-+.|.+..+. |.| +.+.++ .||+. +||
T Consensus 15 ~~~~~~~r~y~i~~~~~~w~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~PG 94 (1065)
T 2j5w_A 15 TPAWAKEKHYYIGIIETTWDYASDHGEKKLISVDTEHSNIYLQNGPDRIGRLYKKALYLQYTDETFRTTIEKPVWLGFLG 94 (1065)
T ss_dssp -----CEEEEEEEEEEEEEESCCCCCCCBBTTBCSSSTHHHHCCCSSCCCSEEEEEEEEEESSSSTTSBCCCCGGGTTSC
T ss_pred cccccceeEEEEEEEEEEeecCCCCcCCCccccchhhhheecccCCcccCCeEeEEEEEEecceeecCCcccccccCCcC
Confidence 44567799999999998764 322 223333 57877 999
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceEeeCCccCC----CCCCCCCCCc--c-CCcCCCCCeEEEEEEeCCc---------c
Q 009054 61 PDIYSVTNDNLIINVHNSLPEPFLISWNGVQQR----RNSYEDGVYG--T-TCPIPPGKNFTYILQVKDQ---------I 124 (545)
Q Consensus 61 P~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~----~~~~~DGv~~--~-q~~i~pG~~~~y~~~~~~~---------~ 124 (545)
|+||+++||+|+|+|+|+|+++++|||||+++. +.+++||+++ + ||+|+||++|+|+|++.++ +
T Consensus 95 P~Ir~~~GD~v~v~v~N~l~~~tsiHwHGl~~~~~~DG~~~~dg~~g~~~t~~~I~PG~t~tY~f~~~~~~gp~~~d~~a 174 (1065)
T 2j5w_A 95 PIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNC 174 (1065)
T ss_dssp CCEEEETTCEEEEEEEEESSSCBCCEESSSBCCGGGCCCCSCCCCCGGGTGGGCBCTTCEEEEEEECCSTTSCCTTSCSE
T ss_pred CeEEEeCCeEEEEEEEECCCCCeeEEeCCccCCcccCCcccCCCCCcccccccccCCCCEEEEEEEeccccCCccCCCCc
Confidence 999999999999999999999999999999986 4467888887 6 9999999999999998654 5
Q ss_pred eeeeeecCchh--hhhcCeeeEEEEeCCCCCCCCCC-CCCCcceEEEeeeeecchh----hHHHhh-ccCCCC-------
Q 009054 125 GSYFYFPSVGF--QKAAGGFGGIRILSRPLIPVPFP-EPAGDFTVLIGDWYKANHN----KLKSVL-DRGHRL------- 189 (545)
Q Consensus 125 Gt~wYH~H~~~--~~~~Gl~G~liV~~~~~~~~~~~-~~~~e~~l~~~d~~~~~~~----~~~~~~-~~~~~~------- 189 (545)
||||||||.+. |+++||+|+|||++++....|.+ ..|+|++|+++||..+.+. .+..++ +.+...
T Consensus 175 GT~wYHsH~~~~~qv~~GL~G~lIV~~~~~~~~p~~~~~d~e~~l~l~d~d~~~~w~~~~~~~~~~~~p~~~~~~~~~~~ 254 (1065)
T 2j5w_A 175 VTRIYHSHIDAPKDIASGLIGPLIICKKDSLDKEKEKHIDREFVVMFSVVDENFSWYLEDNIKTYCSEPEKVDKDNEDFQ 254 (1065)
T ss_dssp EEEEEECCSSHHHHHHHTCEEEEEEECTTCBSSSSBTTCCEEEEEEEEEEEGGGSTTHHHHHHHHCSCGGGCCTTCHHHH
T ss_pred eEEEEEeccCchhHhhCccEEEEEEecCcccCCCccCCCccceEEEeeeecCCccccccchhhhhhcCcccccccccccc
Confidence 99999999984 57899999999999764332222 3478999999964322111 111111 111000
Q ss_pred CCCCeEEEcccCC-CCceEEEeCCcEEEEEEEecCCC-CeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceEEEEE
Q 009054 190 PSPDGILINGHGS-NGASFTVEQGKTYRFRISNVGLQ-HSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLV 267 (545)
Q Consensus 190 ~~~~~~liNG~~~-~~~~~~v~~G~~~rlRliNa~~~-~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v 267 (545)
..++.++|||+.+ ..+.++|++|++|||||+|+|.. ..+.|+|+||.|+ ++|+.+|++.|+||||+||+|
T Consensus 255 ~~~~~~~iNG~~~~~~~~l~v~~Ge~vRlRliNag~~~~~~~~~i~Gh~f~--------v~p~~~dtv~I~pGer~dVlv 326 (1065)
T 2j5w_A 255 QSNRMYSVNGYTFGSLSGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALT--------NKNYRIDTINLFPATLFDAYM 326 (1065)
T ss_dssp HHTEEEEETTEETTCCCCCEEETTCEEEEEEEECSSTTCCEEEEETTCCEE--------ETTEEESEEEECBTCEEEEEE
T ss_pred ccCcEEEECCccCCCCcceEECCCCEEEEEEEcCCcccceeEEEEcCCEEE--------ECCeeecEEEECCCcEEEEEE
Confidence 0235799999984 23789999999999999999986 6899999999999 357899999999999999999
Q ss_pred EeCCCCcceEEEEeecccCCccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCCCC------CCCCCC
Q 009054 268 TMDQPPQDFYIAVSTRFTNKVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTASGP------RPNPQG 341 (545)
Q Consensus 268 ~~~~~~g~y~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~------~p~p~~ 341 (545)
++++ +|.|+|+|+..... .....+.+.|.+...+++.+.|..+ ....+ +..++.++|++.+... .+.+++
T Consensus 327 ~~~~-pG~y~i~~h~~~h~-~~Gm~~~~~V~~~~~~~~~~~~~g~-~~~~~-~i~A~e~~wdy~~~~~~~~~~~~~~~~~ 402 (1065)
T 2j5w_A 327 VAQN-PGEWMLSCQNLNHL-KAGLQAFFQVQECNKSSSKDNIRGK-HVRHY-YIAAEEIIWNYAPSGIDIFTKENLTAPG 402 (1065)
T ss_dssp ECCS-CEEEEEEECSHHHH-HTTCEEEEEEECSCCCCCCCCCTTS-EEEEE-EEEEEEEEEESCTTSBCTTTCCBTTCTT
T ss_pred EeCC-CeeEEEEecCcchh-hCCCEEEEEEecCCCcccccccccc-ceeEE-EEeceecccccCCCCcccccccccCCCc
Confidence 9995 89999999965321 1235778888765543323332221 11122 3456677777776543 122222
Q ss_pred CCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCC
Q 009054 342 SYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFR 421 (545)
Q Consensus 342 ~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g 421 (545)
++ ...+ |.......++...-.++ +.|.. ++|+.. .+..|.......-.+++.++.|
T Consensus 403 s~-------~~~~-l~~~~~~ig~~y~k~v~-~~y~d--------------~~f~~~-~~~~~~~~~~g~lgpvi~a~~g 458 (1065)
T 2j5w_A 403 SD-------SAVF-FEQGTTRIGGSYKKLVY-REYTD--------------ASFTNR-KERGPEEEHLGILGPVIWAEVG 458 (1065)
T ss_dssp CT-------THHH-HCCBTTBCCSEEEEEEE-EEESS--------------TTCCSB-CCCCGGGGGGTTSCCCEEEETT
T ss_pred cc-------chhh-hccCCcccCceEeeeee-ecccC--------------CceEEc-CcCCcccccccccCceEEEeCC
Confidence 11 1111 22222223444444444 44432 122211 1111110011123468999999
Q ss_pred cEEEEEEEcCCCCCCceeecCCceEEEeec
Q 009054 422 GFIEIVFQNHENIVQSWHIDGYNFWVVGMN 451 (545)
Q Consensus 422 ~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g 451 (545)
++++|+|.|.....|+||+||+.|++++.|
T Consensus 459 d~i~i~f~N~~~~~~s~h~hG~~f~~~~~g 488 (1065)
T 2j5w_A 459 DTIRVTFHNKGAYPLSIEPIGVRFNKNNEG 488 (1065)
T ss_dssp EEEEEEEEECSSSCBCCEEESSBCCGGGCS
T ss_pred CEEEEEEEECCCCCccCcccceeeeccCCC
Confidence 999999999999999999999999987753
No 19
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=100.00 E-value=3.7e-54 Score=435.58 Aligned_cols=266 Identities=23% Similarity=0.338 Sum_probs=225.2
Q ss_pred CeEEEEEEEEEEEecC-CCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCcc-CC
Q 009054 29 PYRFFTWNVTYGDIYP-LGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGT-TC 106 (545)
Q Consensus 29 ~~~~~~l~~~~~~~~~-dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~-q~ 106 (545)
.+++|+|++++..+.+ +|..+.+|+|||++|||+|||++||+|+|+|+|.++.+++|||||+++.++.++||+|++ ||
T Consensus 1 ~~~~~~l~~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~p~~t~~ 80 (318)
T 3g5w_A 1 EKREFDLSIEDTRIVLVGKRDFHTFAFNGQVPAPLIHVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDGVPHATQH 80 (318)
T ss_dssp CEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCEEEEETTCEEEEEEEECSSSCBCCEEETCCCTTCGGGSCCBTTTBC
T ss_pred CeEEEEEEEEEEEEEcCCCcEEEEEEECCccCCceEEEeCCCEEEEEEEeCCCCceeEEecCcCCCCCcccCCCcccccc
Confidence 3799999999999987 588999999999999999999999999999999999999999999999877899999999 99
Q ss_pred cCCCCCeEEEEEEeCCcceeeeeecCchhhh---hcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchhhHHHhh
Q 009054 107 PIPPGKNFTYILQVKDQIGSYFYFPSVGFQK---AAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHNKLKSVL 183 (545)
Q Consensus 107 ~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~---~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~ 183 (545)
+|+||++++|+|++ +++||||||||.+.+. .+||+|+|||++++..+.+. ..++|++|+++||+++..... .
T Consensus 81 ~i~PG~~~~y~f~~-~~~Gt~wYH~H~~~~~~~~~~Gl~G~lIV~~~~~~~~~~-~~d~e~~l~l~dw~~~~~~~~---~ 155 (318)
T 3g5w_A 81 AIEPGDTFTYKFKA-EPAGTMWYHCHVNVNEHVTMRGMWGPLIVEPKNPLPIEK-TVTKDYILMLSDWVSSWANKP---G 155 (318)
T ss_dssp CBCTTCEEEEEEEC-CSCEEEEEECCSSHHHHHHHSCCEEEEEEECSSCCHHHH-TCCEEEEEEEEEECGGGTTCT---T
T ss_pred cCCCCCEEEEEEEc-CCCEEEEEEccCChhhhhccCCCEEEEEEcCCCcccccc-cccceeEEEEEeecccccccc---c
Confidence 99999999999996 6899999999998443 58999999999865322111 348899999999987543211 1
Q ss_pred ccCCCCCCCCeEEEcccCC-CCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccc-eeeEEeEEEEccCc
Q 009054 184 DRGHRLPSPDGILINGHGS-NGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHT-IQTTYSSLDVHVGQ 261 (545)
Q Consensus 184 ~~~~~~~~~~~~liNG~~~-~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~-~p~~~~~v~l~pge 261 (545)
..+.....++.++|||+.+ ....++|++|++|||||+|++.. .+.|||+||.|+||+.||.++ +|..+|++.|+|||
T Consensus 156 ~~~~~~~~~d~~~ING~~~~~~~~l~v~~G~~vrlrliN~~~~-~h~~hlhGh~f~vi~~dG~~~~~p~~~dtv~l~pge 234 (318)
T 3g5w_A 156 EGGIPGDVFDYYTINAKSFPETQPIRVKKGDVIRLRLIGAGDH-VHAIHTHGHISQIAFKDGFPLDKPIKGDTVLIGPGE 234 (318)
T ss_dssp CCCCTTCCCCEEEETTBCBTSSCCEEECTTCEEEEEEEECSSS-CEEEEETTSCEEEEEETTEEEEEEEEESEEEECTTC
T ss_pred cCCCCCCcCcEEEEcCcCCCCCccEEeCCCCEEEEEEEeCCCc-eEEEEECCcEEEEEecCCcccCCCccccEEEECCCC
Confidence 1122223578999999987 22359999999999999999975 679999999999999999998 79999999999999
Q ss_pred eEEEEEEeCCCCcceEEEEeecccCC-----ccceEEEEEecCCC
Q 009054 262 SYSVLVTMDQPPQDFYIAVSTRFTNK-----VLTSTGTLHYSNSA 301 (545)
Q Consensus 262 R~dv~v~~~~~~g~y~~~~~~~~~~~-----~~~~~ail~y~~~~ 301 (545)
|+||+++++ .||.|.++|+...... .....++|.|.+..
T Consensus 235 r~~v~~~a~-~pG~w~~hCH~~~H~~~g~~~~~Gm~~~i~~~g~~ 278 (318)
T 3g5w_A 235 RYDVILNMD-NPGLWMIHDHVDTHTTNGDKPDGGIMTTIEYEEVG 278 (318)
T ss_dssp EEEEEEECC-SCSEEEEEESSGGGSCBTTBSSCBSEEEEEETTTC
T ss_pred EEEEEEECC-CCeeEEEEeccHHHhhccCcCCCCCEEEEEECCCC
Confidence 999999999 6999999999764322 13346889998754
No 20
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=100.00 E-value=2.5e-56 Score=496.49 Aligned_cols=240 Identities=17% Similarity=0.190 Sum_probs=183.9
Q ss_pred eEEEEEEEEEEEecCC-CeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCc-----
Q 009054 30 YRFFTWNVTYGDIYPL-GVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYG----- 103 (545)
Q Consensus 30 ~~~~~l~~~~~~~~~d-G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~----- 103 (545)
+-...|.+++....+. |+.+..|+ ++|||+|||++||+|+|+|+|+|++++||||||+++. +.+||+|+
T Consensus 46 ~y~k~l~~~~~~~~~~~~~~~~~~~---~~pGP~Ir~~~GD~v~V~v~N~l~~~tsIHwHGl~~~--~~~DG~p~~Dg~~ 120 (742)
T 2r7e_A 46 VYKKTLFVEFTDHLFNIAKPRPPWM---GLLGPTIQAEVYDTVVITLKNMASHPVSLHAVGVSYW--KASEGAEYDDQTS 120 (742)
T ss_dssp CEECCCCCCCSSSCCCCSSCSTTTT---TTSEEEEEECSEEEEECCEECCSSSCCCCCCSSSCCC--SSSSCCCSSCSCC
T ss_pred EEEEEEEEEecceEEECCccccccc---CCcCCeEEEECCCEEEEEEEECCCCCEeEEecCcccC--ccccCCccCCCCc
Confidence 4444666666666654 66666664 8999999999999999999999999999999999875 35566553
Q ss_pred ---c-CCcCCCCCeEEEEEEeCC---------cceeeeeecCchh--hhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEE
Q 009054 104 ---T-TCPIPPGKNFTYILQVKD---------QIGSYFYFPSVGF--QKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLI 168 (545)
Q Consensus 104 ---~-q~~i~pG~~~~y~~~~~~---------~~Gt~wYH~H~~~--~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~ 168 (545)
+ ||+|+||++|+|+|++++ ++||||||||.+. |+.+||+|+|||+++...........+|+++++
T Consensus 121 ~~~vtq~~I~PG~s~tY~f~v~~~~gP~~~d~~~GT~wYHsH~~~~~q~~~GL~G~lIV~~~~~~~~~~~~~~~e~~l~~ 200 (742)
T 2r7e_A 121 QREKEDDKVFPGGSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGALLVCREGSLAKEKTQTLHKFILLF 200 (742)
T ss_dssp SSSSSSSSCCTTCEECCEEEECGGGSCCSSSCSSCCEEECCCSCSHHHHHHHCCEEEEECSSSCTTTTTTTCCCEECCCE
T ss_pred ccccccCcCCCCCeEEEEEEeccccCCCcCCCCcEEEEEccCCChHHHhhCCcEEEEEEecCcccCcccCceeeEEEEEe
Confidence 6 999999999999999853 4699999999984 899999999999997543211111237888887
Q ss_pred ee------eeecchhhHHHhhccCCCCCCCCeEEEcccCC-CCceEEEeCCcEEEEEEEecCCCC-eeeEEEeCceeEEE
Q 009054 169 GD------WYKANHNKLKSVLDRGHRLPSPDGILINGHGS-NGASFTVEQGKTYRFRISNVGLQH-SLNFRIQGHKMKLV 240 (545)
Q Consensus 169 ~d------~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~-~~~~~~v~~G~~~rlRliNa~~~~-~~~~~i~gh~~~vi 240 (545)
++ |+++........+.........+.++|||+.. ..+.++|++|++|||||+|++... .+.|||+||.|+|+
T Consensus 201 ~~~de~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~~~~l~v~~Ge~vrlrliN~g~~~~~h~~hlhGh~f~Vv 280 (742)
T 2r7e_A 201 AVFDEGKSWHSETKNSLMQDRDAASARAWPKMHTVNGYVNRSLPGLIGCHRKSVYWHVIGMGTTPEVHSIFLEGHTFLVR 280 (742)
T ss_dssp ECCCCSSSSCCCCCC-------CCSCCCCCCCCEETTBCTBCCCCCEECSSSCEEEECCCCCSSSCCCCCCCTTCCCEET
T ss_pred ecccCCccccccccccccccCCCccccccCceEEECCccCCCCcceEEcCCCEEEEEEEeCCCCCcceEEEECCCEEEEE
Confidence 65 43332211000011111122357789999985 347799999999999999999875 78999999999998
Q ss_pred eecCccceeeEEeEEEEccCceEEEEEEeCCCCcceEEEEeec
Q 009054 241 EVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTR 283 (545)
Q Consensus 241 a~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~ 283 (545)
+. .+|++.|.||++++|+++++ .+|.|+++|+..
T Consensus 281 g~--------~~Dtv~v~Pg~~~~v~~~~~-~pG~w~~hCH~~ 314 (742)
T 2r7e_A 281 NH--------RQASLEISPITFLTAQTLLM-DLGQFLLFCHIS 314 (742)
T ss_dssp TE--------ECCSCCCCTTCCCEEEECCC-SCSEECCCCCSS
T ss_pred eE--------ecceEEeCCCcEEEEEEEeC-CCeeEEEEeCCh
Confidence 52 46888999999999999998 699999999965
No 21
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=100.00 E-value=1.2e-52 Score=428.99 Aligned_cols=266 Identities=23% Similarity=0.374 Sum_probs=224.5
Q ss_pred CeEEEEEEEEEEEecCC-CeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCcc-CC
Q 009054 29 PYRFFTWNVTYGDIYPL-GVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGT-TC 106 (545)
Q Consensus 29 ~~~~~~l~~~~~~~~~d-G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~-q~ 106 (545)
.+++|+|++++..++++ |.++.+|+|||++|||+|+|++||+|+|+|+|.++++++|||||+++.+++++||+|++ ||
T Consensus 2 ~~~~~~l~~~~~~~~~~~g~~~~~~~~NG~~pGP~I~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGvp~vtq~ 81 (339)
T 2zwn_A 2 AEREFDMTIEEVTIKVAPGLDYKVFGFNGQVPGPLIHVQEGDDVIVNVTNNTSLPHTIHWHGVHQKGTWRSDGVPGVTQQ 81 (339)
T ss_dssp CEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCEEEEETTCEEEEEEEEESSSCBCCEEETCCCTTCGGGSCCBTTTBC
T ss_pred ceEEEEEEEEEEEEEcCCCcEEEEEEECCccCCCeEEEECCCEEEEEEEECCCCCccEEeCCCCcCCCcccCCCCccccC
Confidence 46899999999999875 99999999999999999999999999999999999999999999999887789999999 99
Q ss_pred cCCCCCeEEEEEEeCCcceeeeeecCchh--hhh-cCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchhhHHHhh
Q 009054 107 PIPPGKNFTYILQVKDQIGSYFYFPSVGF--QKA-AGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHNKLKSVL 183 (545)
Q Consensus 107 ~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~--~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~ 183 (545)
+|+||++|+|+|++ +++||||||||... |+. +||+|+|||++++....+. ..++|++++++||++...... .
T Consensus 82 ~I~PG~~~~y~f~~-~~~Gt~wyH~H~~~~~q~~~~Gl~G~liV~p~~~~~~~~-~~d~e~~l~l~d~~~~~~~~~---~ 156 (339)
T 2zwn_A 82 PIEAGDSYTYKFKA-DRIGTLWYHCHVNVNEHVGVRGMWGPLIVDPKQPLPIEK-RVTKDVIMMMSTWESAVADKY---G 156 (339)
T ss_dssp CBCTTCEEEEEEEC-CSCEEEEEECCSSHHHHTTTSCCEEEEEEECSSCCTTGG-GCSEEEEEEEEEECGGGTTCT---T
T ss_pred ccCCCCeEEEEEEC-CCCEEEEEEecCCchhhhhcCCceEeEEecCCCcccccc-cCCceEEEEeeheeccccccc---C
Confidence 99999999999996 68999999999874 788 9999999999865432111 347899999999986422110 0
Q ss_pred ccCCCCCCCCeEEEcccCC-CCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccce-eeEEeEEEEccCc
Q 009054 184 DRGHRLPSPDGILINGHGS-NGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTI-QTTYSSLDVHVGQ 261 (545)
Q Consensus 184 ~~~~~~~~~~~~liNG~~~-~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~-p~~~~~v~l~pge 261 (545)
..+.....++.++|||+.+ ....++|++|++|||||+|++.. .+.|+|+||.|+||+.||.+++ |..+|++.|+|||
T Consensus 157 ~~g~~~~~~~~~~ING~~~~~~~~~~v~~G~~vrlrliN~~~~-~h~~hlhGh~f~vi~~DG~~~~~p~~~dtv~l~pg~ 235 (339)
T 2zwn_A 157 EGGTPMNVADYFSVNAKSFPLTQPLRVKKGDVVKIRFFGAGGG-IHAMHSHGHDMLVTHKDGLPLDSPYYADTVLVSPGE 235 (339)
T ss_dssp CCCSTTSCCCEEEETTBCTTSSCCEEECTTCEEEEEEEECSSS-CEEEEETTCCEEEEEETTEEEEEEEEESEEEECTTC
T ss_pred CCCCCccccceEEEccccCCCcccEEECCCCEEEEEEEeCCCc-eEEEEECCcEEEEEEeCCeecCCCcEEEEEEECCCC
Confidence 1111222568999999987 12349999999999999999964 8899999999999999999986 8899999999999
Q ss_pred eEEEEEEeCCCCcceEEEEeecccC-----CccceEEEEEecCCC
Q 009054 262 SYSVLVTMDQPPQDFYIAVSTRFTN-----KVLTSTGTLHYSNSA 301 (545)
Q Consensus 262 R~dv~v~~~~~~g~y~~~~~~~~~~-----~~~~~~ail~y~~~~ 301 (545)
|+||+++++ .||.|+++|+..... ......++++|.+..
T Consensus 236 r~~v~~~~~-~pG~w~~hch~~~H~~~~~~~~~gm~a~l~~~g~~ 279 (339)
T 2zwn_A 236 RYDVIIEAD-NPGRFIFHDHVDTHVTAGGKHPGGPITVIEYDGVP 279 (339)
T ss_dssp EEEEEEECC-SCSEEEEEECCGGGSCBTTBSSCSSEEEEEETTSC
T ss_pred EEEEEEEeC-CCeeEEEEEechhhcccccccCCCcEEEEEECCCC
Confidence 999999998 589999999965421 223347899998754
No 22
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=100.00 E-value=7.8e-51 Score=432.47 Aligned_cols=399 Identities=16% Similarity=0.131 Sum_probs=267.1
Q ss_pred cCCCeEEEEEEEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccC
Q 009054 26 AESPYRFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTT 105 (545)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q 105 (545)
+.+.+++++++++++.+.++| .+.+|||++ ||+|+|++||+|+|+|+|.+...+++||||.... .+
T Consensus 24 ~~~~~~~~~~~~~~~~~~f~g---~~~~vNG~~-~p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~----------~~ 89 (447)
T 2dv6_A 24 HAPVVFTLRTGIAEGRMVYIG---VGGDIDHKI-NPTLVVHEGETVQVNLVNGEGAQHDVVVDQYAAR----------SA 89 (447)
T ss_dssp CCCEEEEEEEEEETTEEEEEE---ESGGGTTCB-SCCEEEETTCEEEEEEECSSSSCBCCEETTTTEE----------CC
T ss_pred CCCceEEEEEEecccEEEEec---cceeecCCc-CCeEEEcCCCEEEEEEEcCCCCceEEEEccCCcc----------cc
Confidence 444566777777766666655 456999999 9999999999999999999987899999996311 27
Q ss_pred CcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeCCCCCCCC--CC---CCCCcceEEEeeeeecch--hh
Q 009054 106 CPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLIPVP--FP---EPAGDFTVLIGDWYKANH--NK 178 (545)
Q Consensus 106 ~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~--~~---~~~~e~~l~~~d~~~~~~--~~ 178 (545)
|+|.||++++|.|++ .++||||||||...|+.+||+|.|+|+++...... +. ....+++..+ |+..... ..
T Consensus 90 ~~i~pG~~~~~~f~~-~~~Gt~~y~~~~~~h~~~Gm~G~i~V~~~~~~~~~~~~~~~~~~~~~~p~~~-d~~~~~~~~~~ 167 (447)
T 2dv6_A 90 IVNGKNASSTFSFVA-SKVGEFNYYCSIAGHRQAGMEGNIQVLPGNRAEMKSSGADITRDPADLPGPI-GPRQAKTVRID 167 (447)
T ss_dssp CBCSTTBEEEEEEEC-CSCEEEEEECCSTTHHHHTCEEEEEEESSCCCCCCCSSBCCBCCTTCSCCCC-CSCCCCEEEEE
T ss_pred eecCCCCeEEEEEEc-CCCEEEEEEeCCCChhhCCCEEEEEEeCCccccCCCcchhhccChhhcCCcc-ccCCCcEEEEE
Confidence 999999999999996 56999999999999999999999999986532110 00 0011111111 1100000 00
Q ss_pred HH-HhhccCC-CCCCCCeEEEcccCCCCceEEEeCCcEEEEEEEecCC-CCeeeEEEeCceeEEEeecCccceeeEEeEE
Q 009054 179 LK-SVLDRGH-RLPSPDGILINGHGSNGASFTVEQGKTYRFRISNVGL-QHSLNFRIQGHKMKLVEVEGTHTIQTTYSSL 255 (545)
Q Consensus 179 ~~-~~~~~~~-~~~~~~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~-~~~~~~~i~gh~~~via~DG~~~~p~~~~~v 255 (545)
+. ....... .....+.++|||+.. .|.+++++|+++||||+|.+. ...+.++++|. ++.||.+ +++
T Consensus 168 l~~~~~~~~~~~g~~~~~~~~NG~~p-gp~i~v~~G~~v~~rl~N~~~~~~~~~ih~Hg~----~~~DG~~------~~~ 236 (447)
T 2dv6_A 168 LETVEVKGQLDDNTTYTYWTFNGKVP-GPFLRVRVGDTVELHLKNHKDSLMVHSVDFHGA----TGPGGAA------AFT 236 (447)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTBBS-CCCEEEETTCEEEEEEEECTTCSSCBCCEETTC----CSGGGGG------GGC
T ss_pred EEEEEEEEeccCCceeEEEEECCccC-CCeEEecCCCEEEEEEEeCCCCceeEEEeeccc----cCCCCCC------ccE
Confidence 00 0000000 012346899999962 399999999999999999986 34567777764 3679974 234
Q ss_pred EEccCceEEEEEEeCCCCcceEEEEeeccc-CC-ccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCC
Q 009054 256 DVHVGQSYSVLVTMDQPPQDFYIAVSTRFT-NK-VLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTAS 333 (545)
Q Consensus 256 ~l~pgeR~dv~v~~~~~~g~y~~~~~~~~~-~~-~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~ 333 (545)
.|.||||++++++++ .+|+||++|+.... .+ .....+.+.|.+.. .+|. .+...... ..+ +.....
T Consensus 237 ~i~pG~~~~~~~~~~-~~G~~~yh~h~~~~~~~~~~Gl~g~l~v~~~~-----~~P~---~d~~~~~~-~~~--~~~~~~ 304 (447)
T 2dv6_A 237 QTDPGEETVVTFKAL-IPGIYVYHCATPSVPTHITNGMYGLLLVEPEG-----GLPQ---VDREFYVM-QGE--IYTVKS 304 (447)
T ss_dssp CBCTTCEEEEEEECC-SCEEEEEECCSSSHHHHHHTTCEEEEEEECTT-----CSCC---CSEEEEEE-EEE--ECBSSC
T ss_pred EeCCCCEEEEEEECC-CCeEEEEEeCCCChHHHHhCCCEEEEEEeCCC-----CCCC---CCeeEEEE-ecc--cccCCc
Confidence 599999999999998 57999999985211 11 12235666665432 1221 11110000 000 100000
Q ss_pred CCCCCCCCCCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccc
Q 009054 334 GPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDT 413 (545)
Q Consensus 334 ~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 413 (545)
....+ ...+............|.|||+.+... ..
T Consensus 305 ---~~~~g-----------~~~~~~~~~~~~~~~~~~iNG~~~~~~--------------------------------~~ 338 (447)
T 2dv6_A 305 ---FGTSG-----------EQEMDYEKLINEKPEYFLFNGSVGSLT--------------------------------RS 338 (447)
T ss_dssp ---TTCCE-----------ECCBBHHHHHTTCCSEEEETTSTTCCC--------------------------------CC
T ss_pred ---ccccc-----------cccCChHHhhccCCCEEEECCcccCCC--------------------------------CC
Confidence 00000 000000000001234689999865321 01
Q ss_pred eEEecCCCcEEEEEEEcCC-CCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCC-ccceEEeCCCCEEEEEEEeCCc
Q 009054 414 SVMGADFRGFIEIVFQNHE-NIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAV-SRCTTQVYPKSWTAIYVALDNV 491 (545)
Q Consensus 414 ~~~~~~~g~~v~~~i~N~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~-~rDTv~vp~~~~v~irf~adnp 491 (545)
..+.++.|++++|+|.|.+ ...||||||||+|+||+++++. +..|. +|||+.|++++++.|+|++|||
T Consensus 339 ~~~~v~~g~~vrlrliN~~~~~~h~~hlhGh~f~vv~~dG~~----------~~~p~~~~dtv~l~pg~r~~i~~~~~~p 408 (447)
T 2dv6_A 339 HPLYASVGETVRIFFGVGGPNFTSSFHVIGEIFDHVYSLGSV----------VSPPLIGVQTVSVPPGGATIVDFKIDRA 408 (447)
T ss_dssp CCEEECTTCEEEEEEEEEESSCCEEEEEETCCEEEECGGGCS----------SSCCEEEESEEEECTTEEEEEEEECCSC
T ss_pred cceEECCCCEEEEEEEeCCCCceEeEEEcCcEEEEEEcCCcc----------cCCCcccccEEEECCCcEEEEEEECCCC
Confidence 3467889999999999987 5789999999999999986432 12344 7999999999999999999999
Q ss_pred cceeeeecchhhhhcceEEEEEEeCCCc
Q 009054 492 GMWNVRSEFWARQYLGQQFYLRVYSPVE 519 (545)
Q Consensus 492 G~w~~HCHil~H~d~GMm~~~~V~~~~~ 519 (545)
|.|+||||+++|++.|||+.++|.....
T Consensus 409 G~~~~hch~~~h~~~Gm~~~~~v~~~~~ 436 (447)
T 2dv6_A 409 GRYILVDHALSRLEHGLVGFLNVDGPKN 436 (447)
T ss_dssp EEEEEEESSGGGGGGTCCEEEEECSCSC
T ss_pred EEEEEEecCcCccccCCEEEEEEeCCCC
Confidence 9999999999999999999999987654
No 23
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=100.00 E-value=6.3e-50 Score=406.95 Aligned_cols=260 Identities=21% Similarity=0.302 Sum_probs=221.2
Q ss_pred cCCCeEEEEEEEEEEEecC-CCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCC--CCceEeeCCccCCCCCCCCCCC
Q 009054 26 AESPYRFFTWNVTYGDIYP-LGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLP--EPFLISWNGVQQRRNSYEDGVY 102 (545)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~-dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~--~~~~iH~HG~~~~~~~~~DGv~ 102 (545)
+.+++++|+|++++..+++ +|..+.+|+|||++|||+|+|++||+|+|+|+|.++ ..+++||||+. .+||++
T Consensus 34 ~~~~~~~~~l~~~~~~~~~~~G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~-----~~dG~~ 108 (327)
T 1kbv_A 34 DYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAAT-----GQGGGA 108 (327)
T ss_dssp SSCCEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCBEEEETTCEEEEEEEECTTCSSCBCCEETTCC-----SGGGGT
T ss_pred CCCCEEEEEEEEEEEEEEeCCCcEEEEEEECCccCCCeEEEeCCCEEEEEEEECCCCCCceeeEeCccc-----cCCCCC
Confidence 4567899999999999998 799999999999999999999999999999999996 58999999984 368876
Q ss_pred ccCCcCCCCCeEEEEEEeCCcceeeeeecCc---hhhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchhh-
Q 009054 103 GTTCPIPPGKNFTYILQVKDQIGSYFYFPSV---GFQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHNK- 178 (545)
Q Consensus 103 ~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~---~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~- 178 (545)
.. ..|.||++++|+|++ +++||||||||. ..|+.+||+|+|||++++.. +..|+|++++++||+++....
T Consensus 109 ~~-~~i~PG~~~~y~f~~-~~~Gt~wyH~h~~~~~~~~~~Gl~G~~iV~~~~~~----p~~d~e~~l~~~d~~~~~~~~~ 182 (327)
T 1kbv_A 109 AA-TFTAPGRTSTFSFKA-LQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGL----PKVDKEFYIVQGDFYTKGKKGA 182 (327)
T ss_dssp TT-TCBCTTEEEEEEEEC-CSCEEEEEECCCSSHHHHHHTTCEEEEEEECTTCC----CCCSEEEEEEEEEECBSSCTTC
T ss_pred cc-eeecCCCEEEEEEEC-CCCeEEEEEeCCCChhhhhhcceEEEEEEecCCCC----CCCceEEEEEeeeeeccCcccc
Confidence 53 359999999999996 679999999997 47999999999999986422 234889999999999864210
Q ss_pred -------HHHhhccCCCCCCCCeEEEcccCCCC---ceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccce
Q 009054 179 -------LKSVLDRGHRLPSPDGILINGHGSNG---ASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTI 248 (545)
Q Consensus 179 -------~~~~~~~~~~~~~~~~~liNG~~~~~---~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~ 248 (545)
..... ...++.++|||+.+.. +.++|++|++|||||+|+|....+.|+|+||.|+||+.||.+++
T Consensus 183 ~g~~~~~~~~~~-----~~~~~~~~iNG~~~~~~~~~~l~v~~G~~vRlRliN~~~~~~~~~~l~Gh~f~vi~~DG~~~~ 257 (327)
T 1kbv_A 183 QGLQPFDMDKAV-----AEQPEYVVFNGHVGALTGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLI 257 (327)
T ss_dssp CEEECBCHHHHH-----HTCCSEEEETTSTTTTSGGGCEEEETTEEEEEEEEEEESSCCEEEEEETCCBSEEEGGGSSCE
T ss_pred ccccccChhHhc-----cCCCceEEEcCcccCCCCceeEEeCCCCEEEEEEECCCCCCceeEEEeCCEEEEEEcCCCcCC
Confidence 11110 1246899999999822 46999999999999999999889999999999999999999999
Q ss_pred eeEEeEEEEccCceEEEEEEeCCCCcceEEEEeecccCCccceEEEEEecCCCC
Q 009054 249 QTTYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTRFTNKVLTSTGTLHYSNSAH 302 (545)
Q Consensus 249 p~~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~~~~~~~~~~ail~y~~~~~ 302 (545)
|..++++.|+||||+||+|+++ .+|.|+|+|+...........|+++|++...
T Consensus 258 p~~~d~l~l~pGer~dv~v~~~-~pG~y~l~~h~~~~~~~~g~~a~l~~~g~~~ 310 (327)
T 1kbv_A 258 NENVQSTIVPAGGSAIVEFKVD-IPGNYTLVDHSIFRAFNKGALGQLKVEGAEN 310 (327)
T ss_dssp ECSBSEEEECTTEEEEEEEEEC-SCEEEEEEESSTHHHHHSSCEEEEEEESCCC
T ss_pred CCceeEEEECCCCEEEEEEEeC-CCeEEEEEeccccccccCCcEEEEEECCCCC
Confidence 9999999999999999999999 5899999998664322345689999987643
No 24
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=100.00 E-value=2.7e-50 Score=399.97 Aligned_cols=245 Identities=16% Similarity=0.161 Sum_probs=196.1
Q ss_pred hcCCCeEEEEEEEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCcc
Q 009054 25 RAESPYRFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGT 104 (545)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~ 104 (545)
.+...+++|+|+|++.. .+.....++.|||++|||+|||++||+|+|+|+|+|+++++|||||+++. ..+||++ +
T Consensus 2 ~~~g~~~~~~l~~~~~~--~~~~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~~~~~~siH~HG~~~~--~~~DG~~-~ 76 (276)
T 3kw8_A 2 PAGGEVRHLKMYAEKLA--DGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYE--ISSDGTA-M 76 (276)
T ss_dssp --CCCEEEEEEEEEECT--TSCEEEESSTTCCBSSCCCEEEETTCEEEEEEEECSSSCBCCEESSSBCC--GGGSCCT-T
T ss_pred CCcceEEEEEEEEEeCC--CCceecceeccCCcccCCeEEEECCCEEEEEEEECCCCCccEeecCcccC--CccCCCc-C
Confidence 35567899999999743 34455677889999999999999999999999999999999999999885 4699999 6
Q ss_pred -CCcCCCCCeEEEEEEeCC------------cceeeeeecCch------hhhhcCeeeEEEEeCCCCCCCCCCCCCCcce
Q 009054 105 -TCPIPPGKNFTYILQVKD------------QIGSYFYFPSVG------FQKAAGGFGGIRILSRPLIPVPFPEPAGDFT 165 (545)
Q Consensus 105 -q~~i~pG~~~~y~~~~~~------------~~Gt~wYH~H~~------~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~ 165 (545)
||+|+||++|+|+|++.+ ++||||||||.+ .|+.+||+|+|||+++... . .|+|++
T Consensus 77 t~~~i~pG~~~~Y~f~~~~~~~~~~g~~~~~~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~~~--~---~drE~~ 151 (276)
T 3kw8_A 77 NKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGDV--L---PDATHT 151 (276)
T ss_dssp TTCSBCTTCEEEEEEECCCCEECTTSCEECCSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTCC--C---CSEEEE
T ss_pred CcCCCCCCCEEEEEEEcCCccccccCccCCCCCEEEEEecCccccccchhhhhCccEEEEEEecCCCc--c---cccceE
Confidence 999999999999999753 379999999985 6899999999999996532 1 256666
Q ss_pred EEEeeeeecchhhHHHhhccCCCCCCCCeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCc
Q 009054 166 VLIGDWYKANHNKLKSVLDRGHRLPSPDGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGT 245 (545)
Q Consensus 166 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~ 245 (545)
|++++| +
T Consensus 152 l~l~~~------------------------~------------------------------------------------- 158 (276)
T 3kw8_A 152 IVFNDM------------------------T------------------------------------------------- 158 (276)
T ss_dssp EEEETT------------------------E-------------------------------------------------
T ss_pred EEeccc------------------------c-------------------------------------------------
Confidence 644211 1
Q ss_pred cceeeEEeEEEEccCceEEEEEEeCCCCcceEEEEeecccCCccceEEEEEecCCCCCCCCCCCCCCCcccccccccccc
Q 009054 246 HTIQTTYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTRFTNKVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARS 325 (545)
Q Consensus 246 ~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 325 (545)
T Consensus 159 -------------------------------------------------------------------------------- 158 (276)
T 3kw8_A 159 -------------------------------------------------------------------------------- 158 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCCCCCCCCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCC
Q 009054 326 IRTNLTASGPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPT 405 (545)
Q Consensus 326 l~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~ 405 (545)
|||+.|.. .
T Consensus 159 ---------------------------------------------iNG~~~~~--~------------------------ 167 (276)
T 3kw8_A 159 ---------------------------------------------INNRKPHT--G------------------------ 167 (276)
T ss_dssp ---------------------------------------------ETTCCTTC--C------------------------
T ss_pred ---------------------------------------------cceecccC--C------------------------
Confidence 11111100 0
Q ss_pred CCCccccceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEE
Q 009054 406 GGNIYLDTSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIY 485 (545)
Q Consensus 406 ~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~ir 485 (545)
..+.++.|++|+|+|.|.+.+.|||||||+.|++++.| .+... ...+.++||+.|.|++++.++
T Consensus 168 --------p~i~v~~G~~vri~l~N~~~~~Hp~HlHG~~f~v~~~G--~~~~p------~~~~~~~Dtv~v~pg~~~~~~ 231 (276)
T 3kw8_A 168 --------PDFEATVGDRVEIVMITHGEYYHTFHMHGHRWADNRTG--ILTGP------DDPSRVIDNKITGPADSFGFQ 231 (276)
T ss_dssp --------CCEEEETTCEEEEEEEEESSCCEEEEETTCCEESSSSS--SCCST------TCCCCEESEEEECTTCEEEEE
T ss_pred --------CCEEEecCCEEEEEEecCCCcceeEEEccceeEEeccC--ccCCC------cccccCCccEEeCCCceEEEE
Confidence 01345678889999999998999999999999997643 23211 123568999999999999999
Q ss_pred EEeC---CccceeeeecchhhhhcceEEEEEEeCCCc
Q 009054 486 VALD---NVGMWNVRSEFWARQYLGQQFYLRVYSPVE 519 (545)
Q Consensus 486 f~ad---npG~w~~HCHil~H~d~GMm~~~~V~~~~~ 519 (545)
|+++ |||.|+||||+++|++.|||..|.|.++++
T Consensus 232 ~~~~~~~npG~w~~HCH~~~H~~~GM~g~~~V~~~~~ 268 (276)
T 3kw8_A 232 IIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDG 268 (276)
T ss_dssp EETTTTTCSEEEEEEECSHHHHHTTCEEEEEEECTTS
T ss_pred EEeccCCCCCeEEEECCCchHhhCCCeEEEEEeCCCC
Confidence 9997 899999999999999999999999998864
No 25
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=100.00 E-value=2.6e-48 Score=388.13 Aligned_cols=233 Identities=21% Similarity=0.312 Sum_probs=205.8
Q ss_pred CeEEEEEEEEEEEecCC-CeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCcc-CC
Q 009054 29 PYRFFTWNVTYGDIYPL-GVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGT-TC 106 (545)
Q Consensus 29 ~~~~~~l~~~~~~~~~d-G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~-q~ 106 (545)
.+++|+|++++..+.+. |..+.+|+|||++|||+|||++||+|+|+|+|.++++++|||||++ ..++||+|++ ||
T Consensus 33 ~~~~~~l~~~~~~~~~~~g~~~~~~~~ng~~pgP~i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~---~~~~DG~p~~~~~ 109 (288)
T 3gdc_A 33 TLREWDIVAVDKDFEIAPGIIFKGWSYNGRIPGPTLWAREGDALRIHFTNAGAHPHTIHFHGVH---RATMDGTPGIGAG 109 (288)
T ss_dssp EEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCEEEEETTCEEEEEEEECSSSCBCCEESSCC---CGGGSCCTTSTTC
T ss_pred cEEEEEEEEEEEEEEeCCCcEEEEEEECCccCCCcEEEeCCCEEEEEEEeCCCCcccEEecccc---ccccCCCCCccce
Confidence 36899999999998864 9999999999999999999999999999999999999999999996 3689999998 99
Q ss_pred cCCCCCeEEEEEEeCCcceeeeeecCch---hhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchhhHHHhh
Q 009054 107 PIPPGKNFTYILQVKDQIGSYFYFPSVG---FQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHNKLKSVL 183 (545)
Q Consensus 107 ~i~pG~~~~y~~~~~~~~Gt~wYH~H~~---~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~ 183 (545)
+|+||++++|+|++ +++||||||||.+ .|+.+||+|+|||++++..+ ..++|++|+++||+.++
T Consensus 110 ~i~PG~~~~y~f~~-~~~Gt~~yH~H~~~~~~~~~~Gl~G~liV~~~~~~~----~~d~e~~l~~~d~~~~~-------- 176 (288)
T 3gdc_A 110 SIAPGQSFTYEFDA-TPFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKEGRP----PADDEMVMVMNGYNTDG-------- 176 (288)
T ss_dssp SBCTTCEEEEEEEC-CSCEEEEEECCCSSHHHHHHTTCEEEEEEECSSCCC----CCSEEEEEEEEEECCSS--------
T ss_pred eECCCCEEEEEEEc-CCCccEEEEecCcchHHHHhCcCeEEEEEeCCccCC----CCcceEEEEEeeEecCC--------
Confidence 99999999999996 7899999999997 68999999999999875421 23789999999998651
Q ss_pred ccCCCCCCCCeEEEcccCCC--CceEEEeCCcEEEEEEEecCCCC-eeeEEEeCceeEEEeecCccceeeEEeEEEEccC
Q 009054 184 DRGHRLPSPDGILINGHGSN--GASFTVEQGKTYRFRISNVGLQH-SLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVG 260 (545)
Q Consensus 184 ~~~~~~~~~~~~liNG~~~~--~~~~~v~~G~~~rlRliNa~~~~-~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pg 260 (545)
+ ..++.++|||+.+. .+.++++.|+++||||+|++... .+.|||+||.|+|++.++....|...|++.|.||
T Consensus 177 --g---~~~~~~~iNG~~~~~~~~~l~v~~Ge~vr~~l~N~g~~~~~H~fHlhG~~f~v~~~g~~~~~~~~~Dtv~v~pg 251 (288)
T 3gdc_A 177 --G---DDNEFYSVNGLPFHFMDFPVKVKQHELVRIHLINVLEYDPINSFHIHGNFFHYYPTGTMLTPSEYTDTISQVQG 251 (288)
T ss_dssp --T---TCCSEEEETTSTTHHHHSCEEEETTCCEEEEEEECCCSSSEEEEEETTCCEEEEETTCCSSCSEEESEEEEETT
T ss_pred --C---CCcceEEECcccccccCcccccCCCCEEEEEEEeCCCCCcceeEEEcCCEEEEEcCCCccCCCceeeEEEeCCC
Confidence 1 13579999999872 24699999999999999999654 7899999999999985444446789999999999
Q ss_pred ceEEEEEEeCCCCcceEEEEeec
Q 009054 261 QSYSVLVTMDQPPQDFYIAVSTR 283 (545)
Q Consensus 261 eR~dv~v~~~~~~g~y~~~~~~~ 283 (545)
||++|+++++ .||.|.++|+..
T Consensus 252 ~~~~v~~~~~-~pG~~~~hCH~~ 273 (288)
T 3gdc_A 252 QRGILELRFP-YPGKFMFHAHKT 273 (288)
T ss_dssp CEEEEEECCC-SCEEEEEECSSH
T ss_pred ceEEEEEECC-CCEEEEEEecCh
Confidence 9999999999 799999999854
No 26
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=100.00 E-value=2.4e-46 Score=397.16 Aligned_cols=266 Identities=20% Similarity=0.217 Sum_probs=222.4
Q ss_pred hcCCCeEEEEEEEEEEEecC-CCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCC--CCceEeeCCccCCCCCCCCCC
Q 009054 25 RAESPYRFFTWNVTYGDIYP-LGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLP--EPFLISWNGVQQRRNSYEDGV 101 (545)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~~~-dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~--~~~~iH~HG~~~~~~~~~DGv 101 (545)
.+.+++++|+|++++.++.+ ||..+.+|+|||++|||+|+|++||+|+|+|+|.++ .+++|||||+.+ +||+
T Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~ng~~pgp~i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~-----~dG~ 97 (442)
T 2zoo_A 23 RDHSAKVVINLETREQVGRIADGVEYVFWSFGETVPGSFIRVREGDEIEFNLSNHPSSKMPHNIDLHAVTG-----PGGG 97 (442)
T ss_dssp CSSCCEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCBEEEETTCEEEEEEEECTTCSSCBCCEETTCCS-----GGGG
T ss_pred cCCCcEEEEEEEEEEEEEEcCCCcEEEEEEECCcCCCCcEEEeCCCEEEEEEEECCCCCCCCCEEecCCcC-----CCCC
Confidence 45668899999999999984 899999999999999999999999999999999986 599999999853 6887
Q ss_pred CccCCcCCCCCeEEEEEEeCCcceeeeeecCc---hhhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchh-
Q 009054 102 YGTTCPIPPGKNFTYILQVKDQIGSYFYFPSV---GFQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHN- 177 (545)
Q Consensus 102 ~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~---~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~- 177 (545)
+.+ .+|+||++++|+|++ +++||||||||. ..|+.+||+|+|||++++.. +..|+|++|+++||+++...
T Consensus 98 ~~~-~~i~pg~~~~y~f~~-~~~Gt~~yH~H~~~~~~~~~~Gl~G~~iv~~~~~~----~~~d~e~~l~l~d~~~~~~~~ 171 (442)
T 2zoo_A 98 AES-SFTAPGHTSTFNFKA-LNPGLYIYHCATAPVGMHIANGMYGLILVEPKEGL----APVDREYYLVQGDFYTKGEFG 171 (442)
T ss_dssp GGG-CCBCTTCEEEEEEEC-CSCEEEEEECCCSSHHHHHHTTCEEEEEEECTTCC----CCCSEEEEEEEEEECBSSCTT
T ss_pred Ccc-EEECCCCEEEEEEEc-CCCeEEEEecCCCChHHHHhCccEEEEEEeCCCCC----CCCCceEEEEeeeeeccCccc
Confidence 654 369999999999995 789999999975 48999999999999986432 13489999999999987531
Q ss_pred hHHH-hhc-cCCCCCCCCeEEEcccCCCC---ceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeEE
Q 009054 178 KLKS-VLD-RGHRLPSPDGILINGHGSNG---ASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTTY 252 (545)
Q Consensus 178 ~~~~-~~~-~~~~~~~~~~~liNG~~~~~---~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~ 252 (545)
.... ..+ .......+++++|||+.+.. +.+++++|++|||||+|+|....+.|+|+||.|+||+.||.+++|..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~l~v~~G~~vrlrliN~~~~~~~~~~i~g~~~~vi~~DG~~~~p~~~ 251 (442)
T 2zoo_A 172 EAGLQPFDMAKAIDEDADYVVFNGSVGSTTDENSLTAKVGETVRLYIGNGGPNLVSSFHVIGEIFDTVYVEGGSLKNHNV 251 (442)
T ss_dssp CCEEECBCHHHHHTTCCSEEEETTSTTTTSGGGCEEEETTCEEEEEEEEEESSCCEEEEEETCCBSEEEGGGSSCEECSB
T ss_pred ccccccCChhHhccCCCCEEEECCCcCCCCCCCceEeCCCCEEEEEEEeCCCCCceeeEEcCCEEEEEecCCccCCCccc
Confidence 0000 000 00012457899999998732 579999999999999999998999999999999999999999999999
Q ss_pred eEEEEccCceEEEEEEeCCCCcceEEEEeecccCCccceEEEEEecCCCC
Q 009054 253 SSLDVHVGQSYSVLVTMDQPPQDFYIAVSTRFTNKVLTSTGTLHYSNSAH 302 (545)
Q Consensus 253 ~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~~~~~~~~~~ail~y~~~~~ 302 (545)
+++.|.||||+||+|+++ .+|.|+++|+...........++++|.+...
T Consensus 252 ~~~~l~pg~r~~v~v~~~-~~G~y~~~~~~~~~~~~~g~~a~l~v~~~~~ 300 (442)
T 2zoo_A 252 QTTLIPAGGAAIVEFKVE-VPGTFILVDHSIFRAFNKGALAMLKVEGPDD 300 (442)
T ss_dssp SEEEECTTEEEEEEEECC-SCEEEEEEESSTHHHHTTSCEEEEEEESCCC
T ss_pred eEEEECCCeeEEEEEEcC-CCCeEEEEecccccccccCceEEEEecCCCC
Confidence 999999999999999999 5899999998654322345689999987653
No 27
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=100.00 E-value=4.2e-47 Score=438.95 Aligned_cols=389 Identities=11% Similarity=0.070 Sum_probs=260.4
Q ss_pred CeeEEEEEEcCcccC--ceEEEecCCEEEEEEEeCCCCCceEeeCCccCCC-CCCCCCCCccCCcCCCCCeEEEEEEeCC
Q 009054 46 GVRQQGILINGQFPG--PDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRR-NSYEDGVYGTTCPIPPGKNFTYILQVKD 122 (545)
Q Consensus 46 G~~~~~~~~ng~~pg--P~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~-~~~~DGv~~~q~~i~pG~~~~y~~~~~~ 122 (545)
|.++.+.++||++|| |+|+|++||+|.++|.|. .+.+||||+++.+ +.++||++.+.|+|.||.+++|+|++ +
T Consensus 615 ~~~~~~~~iNG~~~g~~P~l~~~~gd~v~~~v~~~---g~~~~~Hgl~~~g~t~~~dG~~~~t~~i~pg~~~t~~~~~-~ 690 (1065)
T 2j5w_A 615 QESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSA---GNEADVHGIYFSGNTYLWRGERRDTANLFPQTSLTLHMWP-D 690 (1065)
T ss_dssp HHHTEEEEETTBCTTCCCCCEEETTCCEEEEEECC---CSTTCCEEEEETTCCEEETTEEESEEEECTTCEEEEEECC-C
T ss_pred cccceEEEEeeEecCCCCceEEeCCCEEEEEEEcC---CCcceEEeeEEeCCceeecCeecceEeecCCceEEEEEec-C
Confidence 357889999999999 889999999999999975 4569999999988 89999998777999999999999995 6
Q ss_pred cceeeeeecCchhhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEE----eeeeecchhhHHHhh--ccCCC--------
Q 009054 123 QIGSYFYFPSVGFQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLI----GDWYKANHNKLKSVL--DRGHR-------- 188 (545)
Q Consensus 123 ~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~----~d~~~~~~~~~~~~~--~~~~~-------- 188 (545)
++||||||||...|+.+||.|.++|++......+..+++.|.++.| +||++.....+...+ ..+..
T Consensus 691 ~~Gt~~~h~h~~~~~~~Gm~g~~~V~~~~~~~~~~~~yd~e~~~~iaa~~~dW~~~~~~~~~~~~~~~~~~~p~~~~~n~ 770 (1065)
T 2j5w_A 691 TEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSEDSTFYLGERTYYIAAVEVEWDYSPQREWEKELHHLQEQNVSNAFLDK 770 (1065)
T ss_dssp SCEEEEEEECSHHHHHTTCEEEEEEECCSCCCSCCCCCSEEEEEEEEEEEEEEESCSCCHHHHHHHHHHTCCCCCTTTCC
T ss_pred CCeEEEEecCCCcccCCCcEEEEEEcCCccccCCccCCCcceEEEEeeeeccccCCcchhhhhhccCCCccCccceeecC
Confidence 8999999999999999999999999986443333235578889999 899987655432111 01100
Q ss_pred --CCCCC------eEEEcccC---------------CCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCc
Q 009054 189 --LPSPD------GILINGHG---------------SNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGT 245 (545)
Q Consensus 189 --~~~~~------~~liNG~~---------------~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~ 245 (545)
...+. ++-+.+.. ...|.|++++|+++++||.|... ..+.++.+| +.+... |.
T Consensus 771 ~~~~iG~tY~k~~y~~~~d~tft~~~~r~~~~~~v~~pGP~I~v~~Gd~v~v~l~N~~~-~~~sih~HG--l~~~~~-~~ 846 (1065)
T 2j5w_A 771 GEFYIGSKYKKVVYRQYTDSTFRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMAT-RPYSIHAHG--VQTESS-TV 846 (1065)
T ss_dssp TTTCCCSEEEEEEEEEESSTTCCSBCCCCGGGGGGTTSCCCEEEETTEEEEEEEEECSS-SCBCCEESS--CBCSCS-CC
T ss_pred CCccccceEeeeEEEEEcCCcceecccCCccccccCCCCCEEEEecCCEEEEEEEeCCC-CCceEeecc--ccccCC-CC
Confidence 00011 11222211 12489999999999999999965 455666666 333332 21
Q ss_pred cceeeEEeEEEEccCceEEEEEEeCCC---------CcceEEEEeecccCCc-cceEEEEEecCCCCCCCCCCCCCCCcc
Q 009054 246 HTIQTTYSSLDVHVGQSYSVLVTMDQP---------PQDFYIAVSTRFTNKV-LTSTGTLHYSNSAHPVSGPVPGGPTTQ 315 (545)
Q Consensus 246 ~~~p~~~~~v~l~pgeR~dv~v~~~~~---------~g~y~~~~~~~~~~~~-~~~~ail~y~~~~~~~~~~~p~~p~~~ 315 (545)
..+.||+++...+...+. +|.||++++.....+. ....+.|.+....... ....| .+
T Consensus 847 ---------~~i~PG~~~ty~~~~~~~~gp~~~~~~~gt~wYhsh~~~~~q~~~GL~G~liV~~~~~l~---~~~~~-~d 913 (1065)
T 2j5w_A 847 ---------TPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIVCRRPYLK---VFNPR-RK 913 (1065)
T ss_dssp ---------CCBCTTCEEEEEEECCGGGSCCTTSCSEEEEEEECCTTHHHHHHTTCEEEEEEECCC--------CCC-CE
T ss_pred ---------ceeCCCCeEEEEEEecCccCCccccCCceEEEEecCCChHHhhhccccceeEecCccccc---ccCCC-cc
Confidence 246799998888876542 2689999874321111 1112333332221100 00011 11
Q ss_pred ccccccc--cc-ccccCCCCC--CCCCCCCCCCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccc
Q 009054 316 IDWSLNQ--AR-SIRTNLTAS--GPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFK 390 (545)
Q Consensus 316 ~~~~~~~--~~-~l~~~l~~~--~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~ 390 (545)
.+..+.. .. ...+.+... ...+.|.. + ..... .+. .....|.|||+.|..
T Consensus 914 ~D~~l~~~~~d~~~~~y~~~n~~~~~~~P~~-v-----~~~~~-~~~------~~~~~~~iNG~~~~~------------ 968 (1065)
T 2j5w_A 914 LEFALLFLVFDENESWYLDDNIKTYSDHPEK-V-----NKDDE-EFI------ESNKMHAINGRMFGN------------ 968 (1065)
T ss_dssp EEEEEEEEEEEGGGSTTHHHHHHHHCSCGGG-C-----CTTCH-HHH------HHTEEEEETTBCTTC------------
T ss_pred eEEEEEEEeecCCcceeeccCcccccCCccc-c-----Ccchh-hhh------ccCceEEECCccCCC------------
Confidence 1110000 00 000000000 00000000 0 00000 000 112357888876531
Q ss_pred cccccccCCCCCCCCCCCccccceEEecCCCcEEEEEEEcCC--CCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCC
Q 009054 391 IGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFIEIVFQNHE--NIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDA 468 (545)
Q Consensus 391 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~--~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p 468 (545)
...+.++.|++|+|+|.|.+ .+.||||||||+|+|++++ |
T Consensus 969 ----------------------~~~~~v~~G~~vr~~l~N~g~~~~~HpfHlHG~~F~vv~~~----------------p 1010 (1065)
T 2j5w_A 969 ----------------------LQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRG----------------V 1010 (1065)
T ss_dssp ----------------------CCCCEEETTCEEEEEEEECCSTTCCEEEEESSCCEEETTTT----------------C
T ss_pred ----------------------CccEEeCCCCEEEEEEEeCCCCCcceeEEEcccEEEEEecC----------------C
Confidence 12356889999999999985 5789999999999999763 5
Q ss_pred CccceEEeCCCCEEEEEEEeCCccceeeeecchhhhhcceEEEEEEeCCC
Q 009054 469 VSRCTTQVYPKSWTAIYVALDNVGMWNVRSEFWARQYLGQQFYLRVYSPV 518 (545)
Q Consensus 469 ~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~ 518 (545)
.||||+.|+|+++++|+|++||||.|+||||+++|++.|||..|+|.+.+
T Consensus 1011 ~~~DTv~v~pg~~~~v~~~ad~pG~w~~HCH~~~H~~~GM~~~~~V~~~~ 1060 (1065)
T 2j5w_A 1011 YSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQNE 1060 (1065)
T ss_dssp EEESEEEECTTCEEEEEECCCSCEEEEEEECCHHHHHTTCEEEEEEECCC
T ss_pred ceeeEEEECCCCeEEEEEECCCCeeEEEEeCCHHHHhcCCcEEEEEecCc
Confidence 78999999999999999999999999999999999999999999998765
No 28
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=100.00 E-value=4e-46 Score=380.63 Aligned_cols=269 Identities=16% Similarity=0.171 Sum_probs=210.1
Q ss_pred hhcCCCeEEEEEEEEEEEecC-CCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCC
Q 009054 24 ARAESPYRFFTWNVTYGDIYP-LGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVY 102 (545)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~~-dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~ 102 (545)
+.+.+++++|+|++++..+.+ +|..+.+|+|||++|||+|++++||+|+|+|+|. .+++||||+++.+....||.+
T Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~ng~~pgP~i~~~~Gd~v~v~~~N~---~~~~h~Hg~~~~~~~~~~~~~ 102 (333)
T 1mzy_A 26 AASGPVINEFEMRIIEKEVQLDEDAYLQAMTFDGSIPGPLMIVHEGDYVELTLINP---PENTMPHNIDFHAATGALGGG 102 (333)
T ss_dssp CSSSCCEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCEEEEETTCEEEEEEEEC---TTCCSCBCCEETTSCSGGGGG
T ss_pred cCCCCcEEEEEEEEEEEEEEcCCCcEEEEEEECCccCCCcEEecCCCEEEEEEEEC---CCCcccccceecCCCCCCCCC
Confidence 345667999999999999987 5999999999999999999999999999999999 579999999987644455555
Q ss_pred ccCCcCCCCCeEEEEEEeCCcceeeeeecCch-----hhhhcCeeeEEEEeCCCCCC----CCCCCCCCcceEEEeeeee
Q 009054 103 GTTCPIPPGKNFTYILQVKDQIGSYFYFPSVG-----FQKAAGGFGGIRILSRPLIP----VPFPEPAGDFTVLIGDWYK 173 (545)
Q Consensus 103 ~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-----~~~~~Gl~G~liV~~~~~~~----~~~~~~~~e~~l~~~d~~~ 173 (545)
++ ..|+||++++|+|++ +++||||||||.+ .|+.+||+|+|||++++..+ .++ ..|+|++|+++||++
T Consensus 103 ~~-~~i~PG~~~~y~f~~-~~~Gt~~yH~h~~~~~~~~~~~~Gl~G~~iV~~~~~~~~~~~~p~-~~d~e~~l~l~D~~~ 179 (333)
T 1mzy_A 103 GL-TLINPGEKVVLRFKA-TRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDGLKDHEGKPV-RYDTVYYIGESDHYI 179 (333)
T ss_dssp GG-CCBCTTEEEEEEEEC-CSCEEEEEECCCSTTHHHHHHHTTCEEEEEEECTTCCBCTTSCBC-CCSEEEEEEEEEECC
T ss_pred ce-eEeCCCCEEEEEEEC-CCCEEEEEeecCCcccchhhhhCCCEEEEEEccCcCccccccCCC-ccchheeeeeeeecc
Confidence 55 249999999999996 6799999999997 69999999999999764321 122 348899999999998
Q ss_pred c--chhhHHHh----------hccCCCCCCCCeEEEcccCCC---CceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeE
Q 009054 174 A--NHNKLKSV----------LDRGHRLPSPDGILINGHGSN---GASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMK 238 (545)
Q Consensus 174 ~--~~~~~~~~----------~~~~~~~~~~~~~liNG~~~~---~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~ 238 (545)
. ..+++..+ .+. .....++.++|||+... .+.++|++||+||||++|++....+ ..+++|.++
T Consensus 180 ~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ING~~~~~~~~~~l~v~~Ger~Rl~n~~~~~~~~~-h~i~~h~~~ 257 (333)
T 1mzy_A 180 PKDEDGTYMRFSDPSEGYEDMVAV-MDTLIPSHIVFNGAVGALTGEGALKAKVGDNVLFVHSQPNRDSRP-HLIGGHGDL 257 (333)
T ss_dssp CBCTTSCBCCCSSHHHHHHHHHHH-HTTTCCSEEEETTSTTTTSGGGCEEEETTCEEEEEEEESSSCBCE-EEETCCEEE
T ss_pred CccccccccccccccccccchhHH-hhccCCcEEEECCcccccCCCcceEecCCCEEEEEECCCCCcccc-EEECCCCeE
Confidence 3 22211100 000 01245789999999852 2679999999888776665543322 337899999
Q ss_pred EEeecCcccee-e-EEeEEEEccCceEEEEEEeCCCCcceEEEEeecccCCccceEEEEEecCCCC
Q 009054 239 LVEVEGTHTIQ-T-TYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTRFTNKVLTSTGTLHYSNSAH 302 (545)
Q Consensus 239 via~DG~~~~p-~-~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~~~~~~~~~~ail~y~~~~~ 302 (545)
||+ ||.++++ . .++++.|.||||+||+|+++ .+|+|+++|+...........++++|.+...
T Consensus 258 Vi~-dG~~~~~p~~~~dtv~l~pGer~~v~v~a~-~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~~~ 321 (333)
T 1mzy_A 258 VWE-TGKFHNAPERDLETWFIRGGTAGAALYKFL-QPGVYAYVNHNLIEAVHKGATAHVLVEGEWD 321 (333)
T ss_dssp EET-TCCTTSCCEEEESBCCBCTTEEEEEEEECC-SCEEEEEEESSHHHHHTTCCEEEEEEESCCC
T ss_pred EEe-CCcccCCCccCcceEEECCCceEEEEEEcC-CCEEEEEecChhhhHhhCCCEEEEEEcCCCC
Confidence 999 9999864 3 48999999999999999999 5899999999764321245678999987543
No 29
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=100.00 E-value=9e-46 Score=377.81 Aligned_cols=253 Identities=17% Similarity=0.170 Sum_probs=193.8
Q ss_pred CCCeEEEEEEEEEEEecCCCeeEE-EEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccC
Q 009054 27 ESPYRFFTWNVTYGDIYPLGVRQQ-GILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTT 105 (545)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~dG~~~~-~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q 105 (545)
.+++++|+|++++. ++|.... .+.+||++|||+|+|++||+|+|+|+|.++++++|||||+.+. .++||++..|
T Consensus 45 ~g~~~~~~l~~~~~---~~~~~~~~~~~~ng~~pGP~I~v~~Gd~v~v~~~N~l~~~~sih~HG~~~~--~~~DG~~~t~ 119 (343)
T 3cg8_A 45 GGEVRHLKMYAEKL---ADGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYE--ISSDGTAMNK 119 (343)
T ss_dssp CCCEEEEEEEEEEC---GGGCEEEESSTTCCBSSCCCEEEETTCEEEEEEEECSSSCBCCEESSSBCC--GGGSCCTTTT
T ss_pred CCeEEEEEEEEEEc---cCCeeeeeeecCCCCccCCEEEEECCCEEEEEEEECCCCCeeEEecCcccC--CcCCCccccc
Confidence 45689999999975 3453221 2234899999999999999999999999999999999999875 6899999339
Q ss_pred CcCCCCCeEEEEEEeCC------------cceeeeeecCc------hhhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEE
Q 009054 106 CPIPPGKNFTYILQVKD------------QIGSYFYFPSV------GFQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVL 167 (545)
Q Consensus 106 ~~i~pG~~~~y~~~~~~------------~~Gt~wYH~H~------~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~ 167 (545)
|+|+||++++|+|++.+ ++||||||||. ..|+.+||+|+|||+++... . +|+|++|+
T Consensus 120 ~~I~PG~~~~y~f~~~~pg~~~~g~~~~~~~Gt~~YH~h~~~~~~~~~~~~~Gl~G~~iV~~~~~~--~---pd~e~~l~ 194 (343)
T 3cg8_A 120 SDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGDV--L---PDATHTIV 194 (343)
T ss_dssp CSBCTTCEEEEEEECCCCEECTTSCEECCSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTCC--C---CSEEEEEE
T ss_pred ccccCCCEEEEEEEeCCCCcccccccCCCCceEEEEecCccccccchhhhhcCCeEEEEEecCCCC--C---CCceEEEE
Confidence 99999999999999732 35999999997 36899999999999986432 1 35666666
Q ss_pred EeeeeecchhhHHHhhccCCCCCCCCeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccc
Q 009054 168 IGDWYKANHNKLKSVLDRGHRLPSPDGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHT 247 (545)
Q Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~ 247 (545)
++|| +|||+.
T Consensus 195 ~~d~------------------------~iNG~~---------------------------------------------- 204 (343)
T 3cg8_A 195 FNDM------------------------TINNRK---------------------------------------------- 204 (343)
T ss_dssp EETT------------------------EETTCC----------------------------------------------
T ss_pred cccc------------------------eecccC----------------------------------------------
Confidence 5542 344432
Q ss_pred eeeEEeEEEEccCceEEEEEEeCCCCcceEEEEeecccCCccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccc
Q 009054 248 IQTTYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTRFTNKVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIR 327 (545)
Q Consensus 248 ~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~ 327 (545)
+ +
T Consensus 205 -------------------------------------------------~--------------~--------------- 206 (343)
T 3cg8_A 205 -------------------------------------------------P--------------H--------------- 206 (343)
T ss_dssp -------------------------------------------------T--------------T---------------
T ss_pred -------------------------------------------------C--------------C---------------
Confidence 0 0
Q ss_pred cCCCCCCCCCCCCCCCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCC
Q 009054 328 TNLTASGPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGG 407 (545)
Q Consensus 328 ~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~ 407 (545)
. .
T Consensus 207 -~---------------------------------------------------~-------------------------- 208 (343)
T 3cg8_A 207 -T---------------------------------------------------G-------------------------- 208 (343)
T ss_dssp -C---------------------------------------------------C--------------------------
T ss_pred -C---------------------------------------------------C--------------------------
Confidence 0 0
Q ss_pred CccccceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEE
Q 009054 408 NIYLDTSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVA 487 (545)
Q Consensus 408 ~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~ 487 (545)
..+.++.|++|+|+|.|.+.+.||||||||+|+|+.. |.+.. ....+.|+||+.|+|++++.++|+
T Consensus 209 ------~~l~v~~Ge~vri~l~N~g~~~HpfHlHGh~f~v~~~--G~~~~------p~~~~~~~Dtv~v~PG~~~~v~~~ 274 (343)
T 3cg8_A 209 ------PDFEATVGDRVEIVMITHGEYYHTFHMHGHRWADNRT--GILTG------PDDPSRVIDNKITGPADSFGFQII 274 (343)
T ss_dssp ------CCEEEETTCEEEEEEEEESSCCEEEEETTCCEESSSS--SSCCS------TTCCCCEESEEEECTTCEEEEEEE
T ss_pred ------ccEEeCCCCEEEEEEEcCCccccccEecCcEEEEecc--CcccC------CCCcccceeeEEeCCCCEEEEEEE
Confidence 0034567888999999999899999999999999743 32221 112357899999999999999999
Q ss_pred e---CCccceeeeecchhhhhcceEEEEEEeCCCccccccCCCCCcccccc
Q 009054 488 L---DNVGMWNVRSEFWARQYLGQQFYLRVYSPVESIRDEYPIPKNALLCG 535 (545)
Q Consensus 488 a---dnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~ 535 (545)
+ +|||.|+||||+++|++.|||..|.|.+++. .+|.-.+.|-
T Consensus 275 ~~~~~~pG~w~~HCHi~~H~~~GM~g~~~V~~~~~------~~P~y~~~~~ 319 (343)
T 3cg8_A 275 AGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDG------TIPGYEPHEH 319 (343)
T ss_dssp TTTTTCSEEEEEEECSHHHHHTTCEEEEEEECTTS------CCSCC-----
T ss_pred ECCCCCCeeEEEeCCCHHHHhccCcEEEEEecCCC------CCCCCCCCCc
Confidence 5 8999999999999999999999999987653 3444445553
No 30
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=100.00 E-value=1.8e-45 Score=376.49 Aligned_cols=267 Identities=18% Similarity=0.222 Sum_probs=206.7
Q ss_pred cCCCeEEEEEEEEEEEec--CCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCc
Q 009054 26 AESPYRFFTWNVTYGDIY--PLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYG 103 (545)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~--~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~ 103 (545)
+.+++++|+|++++..+. +||..+.+|+|||++|||+|+|++||+|+|+|+|.+. ++||||+++.+...+||.+.
T Consensus 28 ~~~~~~~~~l~~~~~~~~~~~dg~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~---~~~~h~~~~h~~~~~~~~~~ 104 (336)
T 1oe1_A 28 SGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPAT---NAMPHNVDFHGATGALGGAK 104 (336)
T ss_dssp CCCCEEEEEEEEEEEEEECSTTCCEEEEEEETTBSSCCCEEEETTCEEEEEEEECTT---CCSCBCCEETTSCSGGGGGG
T ss_pred CCCcEEEEEEEEEEEEEEECCCCcEEEEEEECCccCCCeEEEcCCCEEEEEEEcCCC---CCccccceECCCCCCCCCcc
Confidence 355789999999999876 5699999999999999999999999999999999973 45666666655455666655
Q ss_pred cCCcCCCCCeEEEEEEeCCcceeeeeecCch----hhhhcCeeeEEEEeCCCCCC----CCCCCCCCcceEEEeeeeecc
Q 009054 104 TTCPIPPGKNFTYILQVKDQIGSYFYFPSVG----FQKAAGGFGGIRILSRPLIP----VPFPEPAGDFTVLIGDWYKAN 175 (545)
Q Consensus 104 ~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~----~~~~~Gl~G~liV~~~~~~~----~~~~~~~~e~~l~~~d~~~~~ 175 (545)
+ ..|+||++++|+|++ +++||||||||.+ .|+.+||+|+|||++++... .+. ..|+|++|+++||++..
T Consensus 105 ~-~~i~pG~~~~y~f~~-~~~Gt~~yH~h~~~~~~~~~~~Gl~G~liV~~~~~~~~~~~~~~-~~D~e~~l~~~D~~~~~ 181 (336)
T 1oe1_A 105 L-TNVNPGEQATLRFKA-DRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPL-HYDRAYTIGEFDLYIPK 181 (336)
T ss_dssp G-CCBCTTEEEEEEEEC-CSCEEEEEECCCTTCHHHHHHTTCEEEEEEECTTCCBCTTSCBC-CCSEEEEEEEEEECCCB
T ss_pred e-EEeCCCCEEEEEEEC-CCCeEEEEecCCCCchhHHHhCCCeEEEEEecCcCCcccccCcc-cCCceeEeeeeeeeecc
Confidence 5 239999999999996 6799999999985 69999999999999865321 122 34889999999999842
Q ss_pred --hhhHHHhhccC---------CCCCCCCeEEEcccCCC---CceEEEeCCcEEEEEEEecCCCCeeeEE-EeCceeEEE
Q 009054 176 --HNKLKSVLDRG---------HRLPSPDGILINGHGSN---GASFTVEQGKTYRFRISNVGLQHSLNFR-IQGHKMKLV 240 (545)
Q Consensus 176 --~~~~~~~~~~~---------~~~~~~~~~liNG~~~~---~~~~~v~~G~~~rlRliNa~~~~~~~~~-i~gh~~~vi 240 (545)
.+++..+...+ .....++.++|||+.+. .+.++|++|++||| +|++..+.+.++ |+||.|+|+
T Consensus 182 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~l~v~~GervRl--in~~~~~~~~~~~i~gh~~~Vi 259 (336)
T 1oe1_A 182 GPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGANALTAKVGETVLL--IHSQANRDTRPHLIGGHGDWVW 259 (336)
T ss_dssp CTTSSBCCCSSTGGGHHHHHHHHHTTCCSEEEETTSTTTTSGGGCEEEETTCEEEE--EEEESSSCBCEEETTCCEEEEE
T ss_pred ccCCceeecccccccccchhhHhhcCCCCEEEECCeeccCCCCcceEcCCCCEEEE--EecCCCCccceEEECCcCceEe
Confidence 22221110000 01246789999999952 28899999997665 677766666655 599999999
Q ss_pred eecCccceee--EEeEEEEccCceEEEEEEeCCCCcceEEEEeecccCCccceEEEEEecCCCC
Q 009054 241 EVEGTHTIQT--TYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTRFTNKVLTSTGTLHYSNSAH 302 (545)
Q Consensus 241 a~DG~~~~p~--~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~~~~~~~~~~ail~y~~~~~ 302 (545)
+ ||.+++|. .++++.|+||||+||+|+++ .+|.|+++|+...........++++|.+...
T Consensus 260 ~-DG~~~~p~~~~~dtv~i~pGer~dvlv~~~-~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~~ 321 (336)
T 1oe1_A 260 E-TGKFANPPQRDLETWFIRGGSAGAALYTFK-QPGVYAYLNHNLIEAFELGAAGHIKVEGKWN 321 (336)
T ss_dssp T-TCCTTSCCEEEESBCCBCTTEEEEEEEECC-SCEEEEEEESSHHHHHTTSCEEEEEEESCCC
T ss_pred C-CCcCcCCccccceEEEECCCCcEEEEEEcC-CCceEEEEechhhccccCCCeEEEEECCCCC
Confidence 8 99999764 36899999999999999999 4899999999754321245678999987554
No 31
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=100.00 E-value=2.8e-45 Score=375.62 Aligned_cols=267 Identities=17% Similarity=0.191 Sum_probs=206.3
Q ss_pred hcCCCeEEEEEEEEEEEecC--CCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCC
Q 009054 25 RAESPYRFFTWNVTYGDIYP--LGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVY 102 (545)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~~~--dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~ 102 (545)
.+.+++++|+|++++..+.+ ||..+.+|+|||++|||+|+|++||+|+|+|+|.+ +++||||+++.+....||..
T Consensus 33 ~~~~~~~~~~l~~~~~~~~~~~dg~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~---~~~~~hg~~~~~~~~~~~~~ 109 (340)
T 2bw4_A 33 KTGPRVVEFTMTIEEKKLVIDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINPD---TNTLLHNIDFHAATGALGGG 109 (340)
T ss_dssp SSSCCEEEEEEEEEEEEEECSTTCCEEEEEEETTBSSCCEEEEETTCEEEEEEEECT---TCCSCBCCEETTSCSGGGGG
T ss_pred cCCCcEEEEEEEEEEEEEEECCCCcEEEEEEECCCCCCCcEEEcCCCEEEEEEEeCC---CCCccCcceeCCcCCCCCCc
Confidence 45667899999999999874 59999999999999999999999999999999998 77999999877544444443
Q ss_pred ccCCcCCCCCeEEEEEEeCCcceeeeeecCch----hhhhcCeeeEEEEeCCCCCC----CCCCCCCCcceEEEeeeeec
Q 009054 103 GTTCPIPPGKNFTYILQVKDQIGSYFYFPSVG----FQKAAGGFGGIRILSRPLIP----VPFPEPAGDFTVLIGDWYKA 174 (545)
Q Consensus 103 ~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~----~~~~~Gl~G~liV~~~~~~~----~~~~~~~~e~~l~~~d~~~~ 174 (545)
.+ ..|.||++++|+|++ +++||||||||.+ .|+.+||+|+|||++++... .+. .+|+|++|+++||++.
T Consensus 110 ~~-~~i~PG~~~~y~~~~-~~~Gt~wyH~h~~~~~~~~~~~Gl~G~~iV~~~~~~~~~~~~p~-~~d~e~~l~l~D~~~~ 186 (340)
T 2bw4_A 110 AL-TQVNPGEETTLRFKA-TKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLKDEKGQPL-TYDKIYYVGEQDFYVP 186 (340)
T ss_dssp GG-CCBCTTEEEEEEEEC-CSCEEEEEECCCTTCHHHHHHTTCEEEEEEECTBCEECTTSCEE-CCSEEEEEEEEEECCC
T ss_pred cc-eEeCCCCEEEEEEEC-CCCeEEEEEcCCCCchhhHHhCcCEEEEEEccCcCcccccCCCc-CcceeEEEeeeeeeec
Confidence 33 349999999999996 5799999999986 69999999999999864211 122 3488999999999983
Q ss_pred --chhhHHHh----------hccCCCCCCCCeEEEcccCCC---CceEEEeCCcEEEEEEEecCCCCeeeE-EEeCceeE
Q 009054 175 --NHNKLKSV----------LDRGHRLPSPDGILINGHGSN---GASFTVEQGKTYRFRISNVGLQHSLNF-RIQGHKMK 238 (545)
Q Consensus 175 --~~~~~~~~----------~~~~~~~~~~~~~liNG~~~~---~~~~~v~~G~~~rlRliNa~~~~~~~~-~i~gh~~~ 238 (545)
..+.+..+ .+. .....++.++|||+.+. .+.++|++|+++||++.|++. .+.+ ++++|.|+
T Consensus 187 ~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iNG~~~~~~~~~~l~v~~G~r~Rl~n~~~~~--~~~~~~i~gh~~~ 263 (340)
T 2bw4_A 187 KDEAGNYKKYETPGEAYEDAVKA-MRTLTPTHIVFNGAVGALTGDHALTAAVGERVLVVHSQANR--DTRPHLIGGHGDY 263 (340)
T ss_dssp BCTTSCBCCCCSHHHHHHHHHHH-HHTTCCSEEEETTSTTTTSGGGCEEEETTCEEEEEEEESSS--CBCEEEETCCEEE
T ss_pred cccCCcccccccccccccchhhH-hhcCCCCEEEECCccCCccCCCceEcCCCCEEEEEECCCCC--ccceEEecCcceE
Confidence 22221100 000 01235689999999952 288999999988766655443 3333 47899999
Q ss_pred EEeecCcccee-e-EEeEEEEccCceEEEEEEeCCCCcceEEEEeecccCCccceEEEEEecCCCC
Q 009054 239 LVEVEGTHTIQ-T-TYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTRFTNKVLTSTGTLHYSNSAH 302 (545)
Q Consensus 239 via~DG~~~~p-~-~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~~~~~~~~~~ail~y~~~~~ 302 (545)
|++ ||.++.+ . .++++.|.||||+||+|++++ +|.|+++|+...........++++|.+...
T Consensus 264 Vi~-dG~~~~~p~~~~dtv~l~pGer~~v~v~~~~-pG~y~~~~h~~~~h~~~Gm~~~~~V~~~~~ 327 (340)
T 2bw4_A 264 VWA-TGKFRNPPDLDQETWLIPGGTAGAAFYTFRQ-PGVYAYVNHNLIEAFELGAAGHFKVTGEWN 327 (340)
T ss_dssp EET-TCCTTSCCEEEESCCCBCTTEEEEEEEECCS-CEEEEEEESSHHHHHTTSCEEEEEEESCCC
T ss_pred EeC-CCcccCCccccceEEEeCCCceEEEEEECCC-CeeeEEEcCchHHHHhCCCEEEEEECCCCc
Confidence 997 9998864 3 589999999999999999994 899999999763222233568899976543
No 32
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=100.00 E-value=7.1e-45 Score=367.29 Aligned_cols=240 Identities=17% Similarity=0.187 Sum_probs=196.4
Q ss_pred hhcCCCeEEEEEEEEEEEecCCCe-eEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCC
Q 009054 24 ARAESPYRFFTWNVTYGDIYPLGV-RQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVY 102 (545)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~~dG~-~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~ 102 (545)
+.+...+++++|.+++ .++|. ...++.+||++|||+|||++||+|+|+|+|+|++++||||||+++. +.+||++
T Consensus 7 ~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~t~PGP~i~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~--~~~dG~~ 81 (313)
T 3tas_A 7 APAGGEVKRIKLYAER---LGGGQMGYGLEKGKATIPGPLIELNEGDTLHIEFENTMDVPVSLHVHGLDYE--ISSDGTK 81 (313)
T ss_dssp CCCCCCEEEEEEEEEE---CGGGCEEEESSTTCCBSSCCCEEEETTCEEEEEEEECSSSCBCCEESSSBCC--GGGSCST
T ss_pred CCCCceEEEEEEEEEE---cCCCceeeeeecCCccccCCeEEEECCCEEEEEEEECCCCCccEeecCCcCC--ccCCCCc
Confidence 3455568888888753 35664 4567788999999999999999999999999999999999999874 5799999
Q ss_pred ccCCcCCCCCeEEEEEEeC------------CcceeeeeecCch------hhhhcCeeeEEEEeCCCCCCCCCCCCCCcc
Q 009054 103 GTTCPIPPGKNFTYILQVK------------DQIGSYFYFPSVG------FQKAAGGFGGIRILSRPLIPVPFPEPAGDF 164 (545)
Q Consensus 103 ~~q~~i~pG~~~~y~~~~~------------~~~Gt~wYH~H~~------~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~ 164 (545)
..||+|+||++|+|+|++. .++||||||||.. .|+.+||+|+|||+++.. .. +|+|+
T Consensus 82 ~~~~~i~PG~~~~Y~~~~~~P~~~~~~~~~~~~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~~--~~---~d~e~ 156 (313)
T 3tas_A 82 QSRSDVEPGGTRTYTWRTHVPGRRADGTWRAGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGD--VL---PDRTH 156 (313)
T ss_dssp TTTCCBCTTCEEEEEEBCCCCEECTTSCEECCSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTC--BC---CSEEE
T ss_pred cccCCcCCCCEEEEEEEeccCCccccccccCCCceEEEEeecCcccccchhhhhccccCceEeecccc--cc---ccccc
Confidence 7799999999999999852 3689999999975 357899999999998653 23 38999
Q ss_pred eEEEeeeeecchhhHHHhhccCCCCCCCCeEEEcccCC-CCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeec
Q 009054 165 TVLIGDWYKANHNKLKSVLDRGHRLPSPDGILINGHGS-NGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVE 243 (545)
Q Consensus 165 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~-~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~D 243 (545)
+|+++||+. ||+.. ..+.+.++.|+++||||+|++. ..+.|||+||.|++++.|
T Consensus 157 ~l~~~d~t~------------------------Ng~~~~~~~~l~v~~Ge~vr~~liN~g~-~~hpfHlHGh~F~v~~~~ 211 (313)
T 3tas_A 157 TIVFNDMTI------------------------NNRPAHTGPDFEATVGDRVEFVMITHGE-YYHTFHLHGHRWADNRTG 211 (313)
T ss_dssp EEEEETTEE------------------------TTCCTTCCCCEEEETTCEEEEEEEEESS-CCEEEEETTCCEESSTTS
T ss_pred eeeccchhc------------------------ccCCcccccccccccCCEEEEEEecccc-cceeeeecCCeeEEEEEC
Confidence 999999854 34332 2377999999999999999996 567999999999999999
Q ss_pred Cccc---eeeEEeEEEEccCceEEEEEEeCC--CCcceEEEEeecccCCccceEEEEEecC
Q 009054 244 GTHT---IQTTYSSLDVHVGQSYSVLVTMDQ--PPQDFYIAVSTRFTNKVLTSTGTLHYSN 299 (545)
Q Consensus 244 G~~~---~p~~~~~v~l~pgeR~dv~v~~~~--~~g~y~~~~~~~~~~~~~~~~ail~y~~ 299 (545)
|... .|..+|++.|.||||++++|.+.+ .||.|.++||...-. .....+++.++.
T Consensus 212 ~~~~~~~~~~~~Dtv~l~Pger~~v~v~a~~~~nPG~w~~HCHi~~H~-~~GM~~~f~V~~ 271 (313)
T 3tas_A 212 MLTGPDDPSQVIDNKICGPADSFGFQVIAGEGVGAGAWMYHCHVQSHS-DMGMVGLFLVKK 271 (313)
T ss_dssp SCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSEEEEEEECSHHHH-HTTCEEEEEEEC
T ss_pred CccCCCCCCeeeeEEEeCCCcceEEEEEeccCCCCEeEEEEeCChHHH-HCCCeEEEEEEC
Confidence 9875 477899999999999999998764 589999999964211 122456666654
No 33
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=100.00 E-value=1.6e-44 Score=361.91 Aligned_cols=242 Identities=17% Similarity=0.203 Sum_probs=193.7
Q ss_pred hhcCCCeEEEEEEEEEEEecCCCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCc
Q 009054 24 ARAESPYRFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYG 103 (545)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~~dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~ 103 (545)
.++.+.+++++|.+++..-. ...+.++.+||++|||+|||++||+|+|+|+|+|++++||||||+++. +.+||++.
T Consensus 23 ~~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~gt~PGP~i~~~~GD~v~v~~~N~l~~~~siH~HG~~~~--~~~DG~~~ 98 (299)
T 3t9w_A 23 VRAQGTTRRITMYAEKISDE--LYGYGLAPGGATVPGPVLEMWEGDTLEIDLVNTTDRVLSLHPHGVDYD--VNSDGTLM 98 (299)
T ss_dssp ----CCEEEEEEEEEEEETT--EEEEESSTTCCBSSCCCEEEETTCEEEEEEEECSSSCBCCEESSSBCC--GGGSCCTT
T ss_pred cccCCCEEEEEEEEEecCCC--ceeeeecCCCCCccCceEEEECCeEEEEEEEECCCCCccEEeCCcccC--CccCCCcc
Confidence 45677899999999875422 133456667999999999999999999999999999999999999774 67999985
Q ss_pred cCCcCCCCCeEEEEEEeC------------CcceeeeeecCch------hhhhcCeeeEEEEeCCCCCCCCCCCCCCcce
Q 009054 104 TTCPIPPGKNFTYILQVK------------DQIGSYFYFPSVG------FQKAAGGFGGIRILSRPLIPVPFPEPAGDFT 165 (545)
Q Consensus 104 ~q~~i~pG~~~~y~~~~~------------~~~Gt~wYH~H~~------~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~ 165 (545)
.||+|+||++|+|+|+++ .++||||||||.+ .|+.+||+|+|||+++... .+|+|++
T Consensus 99 ~~~~i~PG~t~~Y~~~~~~~~~~~~~~~~~~~~gt~~YH~H~~~~~~~~~~~~~GL~G~liV~~~~~~-----~~d~e~~ 173 (299)
T 3t9w_A 99 NGSAVMPGQTRRYTWRSHVGYRRADGSWAEGTAGYWHYHDHAMGTEHGTEGVLKGLYGALVVRRQGDL-----LPKRQFT 173 (299)
T ss_dssp TTCCBCTTCEEEEEEBCCCCEECTTSCEECCCCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTCC-----CCSEEEE
T ss_pred ccCccCCCCeEEEEEEeecccccCCCcCCCCCceeEEEecCCcccccchhhhcccccceEEEeccccc-----Cccccce
Confidence 599999999999999974 2589999999975 4789999999999986432 2388999
Q ss_pred EEEeeeeecchhhHHHhhccCCCCCCCCeEEEcccCC-CCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecC
Q 009054 166 VLIGDWYKANHNKLKSVLDRGHRLPSPDGILINGHGS-NGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEG 244 (545)
Q Consensus 166 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~-~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG 244 (545)
+++++|. +||+.. ..+.++++.||++||||+|++.. .+.|+|+||.|+++..|+
T Consensus 174 l~~~~~~------------------------~Ng~~~~~~p~l~v~~Ge~Vr~~liN~~~~-~HpfHlHGh~F~v~~~g~ 228 (299)
T 3t9w_A 174 VVFNDMM------------------------INNRAHHDAPTFEANLGERVEWIAIGHGSN-FHTFHLHGHRWLDNRTGM 228 (299)
T ss_dssp EEEETTE------------------------ETTCCTTCCCEEEEETTCEEEEEEEEESSC-CCEEEETTCCEESSSSSS
T ss_pred eeeeeee------------------------ecCccccccccceecCCCEEEEEEEecccc-ceeeeEecceEEEEeccc
Confidence 9987764 455554 34889999999999999999974 579999999999999988
Q ss_pred ccce---eeEEeEEEEccCceEEEEEEeCC--CCcceEEEEeecccCCccceEEEEEecCC
Q 009054 245 THTI---QTTYSSLDVHVGQSYSVLVTMDQ--PPQDFYIAVSTRFTNKVLTSTGTLHYSNS 300 (545)
Q Consensus 245 ~~~~---p~~~~~v~l~pgeR~dv~v~~~~--~~g~y~~~~~~~~~~~~~~~~ail~y~~~ 300 (545)
.... +..+|++.|.||||++++|...+ .||.|.++|+...-. .....+++.+...
T Consensus 229 ~~~~~~~~~~~Dtv~v~PGe~~~~~via~~~dnPG~w~~HCHi~~H~-~~GM~~~f~V~~~ 288 (299)
T 3t9w_A 229 RTSEYDPSPLIDIKDLNPGVSFGFQVIAGEGVGPGMWMYHCHVQNHS-DMGMAGMFLVRNA 288 (299)
T ss_dssp CCSTTCCCCEESEEECCTTCEEEEEEETTTTTCSEEEEEEECSHHHH-HTTCEEEEEEECT
T ss_pred ccCCcCCCCceeeEEeCCceeEEEEEEEeeCCCCeeEEEEcCCHHHH-hcCCeEEEEEECC
Confidence 8763 35689999999999999987653 589999999965321 1223456666543
No 34
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=100.00 E-value=2.4e-41 Score=374.40 Aligned_cols=263 Identities=14% Similarity=0.165 Sum_probs=190.7
Q ss_pred CCCeEEEEEEEEEEEec--CC-----------C-eeEE--EEEE----------------cCcccCceEEEecCCEEEEE
Q 009054 27 ESPYRFFTWNVTYGDIY--PL-----------G-VRQQ--GILI----------------NGQFPGPDIYSVTNDNLIIN 74 (545)
Q Consensus 27 ~~~~~~~~l~~~~~~~~--~d-----------G-~~~~--~~~~----------------ng~~pgP~i~v~~Gd~v~v~ 74 (545)
...+|+|-+-+++.... |. | +-+. ...| ++++|||+|||++||+|+|+
T Consensus 3 ~~~~r~y~i~a~e~~w~y~~~~~~~~~~~~~~~~~y~k~v~~~ytd~~f~~~~~~~~~~~~~~~pGP~I~~~~Gd~v~v~ 82 (647)
T 1sdd_B 3 TGNRKYYYIAAEEISWDYSKFVQSDDVDYVPEDTVYKKVVFRKYLDSTFTKLDPQGEYEEHLGILGPVIRAEVDDVIQVR 82 (647)
T ss_dssp CCCEEEEEEEEEEEEEETTTTC--------CCCCEEEEEEEEEESSTTCCSBCCCCSTTGGGTTSCCCEEEETTCEEEEE
T ss_pred CCCeEEEEEEEEEEEEeCCCCCcccccCccccCCeEeEEEEEEecCCcccccccCCCcccccCCcCceEEEeCCCEEEEE
Confidence 35688999988888753 21 2 1122 2344 34789999999999999999
Q ss_pred EEeCCCCCceEeeCCccCCCCCCCCCCCcc---------CCcCCCCCeEEEEEEeCCc-----ce----eeeeecCch--
Q 009054 75 VHNSLPEPFLISWNGVQQRRNSYEDGVYGT---------TCPIPPGKNFTYILQVKDQ-----IG----SYFYFPSVG-- 134 (545)
Q Consensus 75 ~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~---------q~~i~pG~~~~y~~~~~~~-----~G----t~wYH~H~~-- 134 (545)
|+|.|+++++|||||+++. +.+||+|++ ||+|+||++|+|+|+++++ +| |||||||.+
T Consensus 83 ~~N~l~~~~siH~HGl~~~--~~~DG~~~~~~~~~~~~~~~~I~PG~~~tY~f~~~~~~gp~~~G~~c~T~wYHsH~~~~ 160 (647)
T 1sdd_B 83 FKNLASRPYSLHAHGLSYE--KSSEGKTYEDDSPEWFKEDNAIQPNKTYTYVWHATTRSGPENPGSACRAWAYYSAVNPE 160 (647)
T ss_dssp ECCCSSSCBCCEEETCC-----------------------CCBCTTCCEECCEECCTTTSCCSSSCSEEEEEEECCSSHH
T ss_pred EEECCCCceEEecCcceeC--CCCCCccccCCCCcccccCcccCCCCeEEEEEECCcccCCCCCCCCceEEEEccCCCCc
Confidence 9999999999999999884 679999863 7999999999999998654 57 999999996
Q ss_pred hhhhcCeeeEEEEeCCCCCCC--CCCCCCCcceEEEe------eeeecchhhHHHhhccCCCCCCCCeEEEcccCCCCce
Q 009054 135 FQKAAGGFGGIRILSRPLIPV--PFPEPAGDFTVLIG------DWYKANHNKLKSVLDRGHRLPSPDGILINGHGSNGAS 206 (545)
Q Consensus 135 ~~~~~Gl~G~liV~~~~~~~~--~~~~~~~e~~l~~~------d~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~ 206 (545)
.|+.+||+|+|||+++..... ..+..++|++|+++ ||+++.................++.++|||+.+..|.
T Consensus 161 ~q~~~GL~G~lIV~~~~~~~~~~~~~~~~~e~~l~l~~~d~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~p~ 240 (647)
T 1sdd_B 161 KDIHSGLIGPLLICRKGTLDKETNMPVDMREFVLLFMVFDEKKSWYYDKKPTRSWRRASSEVKNSHEFHAINGMIYNLPG 240 (647)
T ss_dssp HHHTTTCEEEEEEECTTSSCTTSCCCSSCCEEEEEEEEEEGGGSSCCC---------------CCCEEEEETTBSSCCCC
T ss_pred ccccccCccCEEEeeCCCcccccCCCCcceeEEEEEEeecCccccccccCcccccccCCcchhhcCceeccCCEecCCCC
Confidence 799999999999999753211 11223689999999 5665543221000000111235689999999864588
Q ss_pred EEEeCCcEEEEEEEecCCCC-eeeEEEeCceeEEEeecCccceeeEEeEEEEccCceEEEEEEeCCCCcceEEEEeeccc
Q 009054 207 FTVEQGKTYRFRISNVGLQH-SLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTRFT 285 (545)
Q Consensus 207 ~~v~~G~~~rlRliNa~~~~-~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~~~ 285 (545)
++|++|++|||||+|++... .+.||++||.|++|+.||. .++++.|+||||+||+|+++ .+|.|.++|+....
T Consensus 241 l~v~~G~~vrlrliN~~~~~~~h~~hlhG~~f~vi~~d~~-----~~d~v~l~pg~r~~v~~~~~-~pG~w~~hch~~~h 314 (647)
T 1sdd_B 241 LRMYEQEWVRLHLLNLGGSRDIHVVHFHGQTLLENGTQQH-----QLGVWPLLPGSFKTLEMKAS-KPGWWLLDTEVGEI 314 (647)
T ss_dssp CEEETTCEEEEEEEECCCTTCCEEEEETTCCEEECSSSCE-----EESSEEECTTEEEEEEEECC-SSEEEEEECCCHHH
T ss_pred eEEcCCCEEEEEEEeCCCCCcceeEEEcCcEEEEecCCCc-----ccceEEECCCeEEEEEEEec-cceEeecccCcccc
Confidence 99999999999999999864 8999999999999999863 78999999999999999999 58999999996432
Q ss_pred CCccceEEEEEec
Q 009054 286 NKVLTSTGTLHYS 298 (545)
Q Consensus 286 ~~~~~~~ail~y~ 298 (545)
. .....+++.+.
T Consensus 315 ~-~~Gm~~~~~V~ 326 (647)
T 1sdd_B 315 Q-RAGMQTPFLIV 326 (647)
T ss_dssp H-TTTCEEEEEEE
T ss_pred c-ccccccceeee
Confidence 1 12234555553
No 35
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=100.00 E-value=1.4e-39 Score=345.73 Aligned_cols=256 Identities=15% Similarity=0.171 Sum_probs=211.4
Q ss_pred CCeEEEEEEEEEEEecC-CCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCC--CCceEeeCCccCCCCCCCCCCCcc
Q 009054 28 SPYRFFTWNVTYGDIYP-LGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLP--EPFLISWNGVQQRRNSYEDGVYGT 104 (545)
Q Consensus 28 ~~~~~~~l~~~~~~~~~-dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~--~~~~iH~HG~~~~~~~~~DGv~~~ 104 (545)
+.++.++|++++....+ +|....+|+|||++|||+|+|++||+++|+|+|.+. ..++|||||+. .+||++..
T Consensus 161 ~~~~~~~l~~~~~~~~~~~g~~~~~~~~NG~~pgp~i~v~~G~~v~~rl~N~~~~~~~~~ih~Hg~~-----~~DG~~~~ 235 (447)
T 2dv6_A 161 AKTVRIDLETVEVKGQLDDNTTYTYWTFNGKVPGPFLRVRVGDTVELHLKNHKDSLMVHSVDFHGAT-----GPGGAAAF 235 (447)
T ss_dssp CCEEEEEEEEEEEEEEEETTEEEEEEEETTBBSCCCEEEETTCEEEEEEEECTTCSSCBCCEETTCC-----SGGGGGGG
T ss_pred CcEEEEEEEEEEEEEeccCCceeEEEEECCccCCCeEEecCCCEEEEEEEeCCCCceeEEEeecccc-----CCCCCCcc
Confidence 45678899888777766 698999999999999999999999999999999985 57899999984 37998865
Q ss_pred CCcCCCCCeEEEEEEeCCcceeeeeecCch---hhhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchh----
Q 009054 105 TCPIPPGKNFTYILQVKDQIGSYFYFPSVG---FQKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHN---- 177 (545)
Q Consensus 105 q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~---~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~---- 177 (545)
..|.||++++|.|++ +++||||||||.. .|+.+||+|+|+|+++... | ..++|++++++||++....
T Consensus 236 -~~i~pG~~~~~~~~~-~~~G~~~yh~h~~~~~~~~~~Gl~g~l~v~~~~~~--P--~~d~~~~~~~~~~~~~~~~~~~g 309 (447)
T 2dv6_A 236 -TQTDPGEETVVTFKA-LIPGIYVYHCATPSVPTHITNGMYGLLLVEPEGGL--P--QVDREFYVMQGEIYTVKSFGTSG 309 (447)
T ss_dssp -CCBCTTCEEEEEEEC-CSCEEEEEECCSSSHHHHHHTTCEEEEEEECTTCS--C--CCSEEEEEEEEEECBSSCTTCCE
T ss_pred -EEeCCCCEEEEEEEC-CCCeEEEEEeCCCChHHHHhCCCEEEEEEeCCCCC--C--CCCeeEEEEecccccCCcccccc
Confidence 239999999999996 6799999999974 7889999999999986422 2 3478999999999875321
Q ss_pred ----hHHHhhccCCCCCCCCeEEEcccCCCC---ceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceee
Q 009054 178 ----KLKSVLDRGHRLPSPDGILINGHGSNG---ASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQT 250 (545)
Q Consensus 178 ----~~~~~~~~~~~~~~~~~~liNG~~~~~---~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~ 250 (545)
...... ...++.++|||+.+.. +.+++++|++|||||+|++....+.|||+||.|+||+.||.+++|.
T Consensus 310 ~~~~~~~~~~-----~~~~~~~~iNG~~~~~~~~~~~~v~~g~~vrlrliN~~~~~~h~~hlhGh~f~vv~~dG~~~~~p 384 (447)
T 2dv6_A 310 EQEMDYEKLI-----NEKPEYFLFNGSVGSLTRSHPLYASVGETVRIFFGVGGPNFTSSFHVIGEIFDHVYSLGSVVSPP 384 (447)
T ss_dssp ECCBBHHHHH-----TTCCSEEEETTSTTCCCCCCCEEECTTCEEEEEEEEEESSCCEEEEEETCCEEEECGGGCSSSCC
T ss_pred cccCChHHhh-----ccCCCEEEECCcccCCCCCcceEECCCCEEEEEEEeCCCCceEeEEEcCcEEEEEEcCCcccCCC
Confidence 011111 1246899999999721 3799999999999999999888899999999999999999998654
Q ss_pred --EEeEEEEccCceEEEEEEeCCCCcceEEEEeecccCCccceEEEEEecCCC
Q 009054 251 --TYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTRFTNKVLTSTGTLHYSNSA 301 (545)
Q Consensus 251 --~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~~~~~~~~~~ail~y~~~~ 301 (545)
.+|++.|.||||++|+++++ .||.|+++|+..... .....++++|.+..
T Consensus 385 ~~~~dtv~l~pg~r~~i~~~~~-~pG~~~~hch~~~h~-~~Gm~~~~~v~~~~ 435 (447)
T 2dv6_A 385 LIGVQTVSVPPGGATIVDFKID-RAGRYILVDHALSRL-EHGLVGFLNVDGPK 435 (447)
T ss_dssp EEEESEEEECTTEEEEEEEECC-SCEEEEEEESSGGGG-GGTCCEEEEECSCS
T ss_pred cccccEEEECCCcEEEEEEECC-CCEEEEEEecCcCcc-ccCCEEEEEEeCCC
Confidence 58999999999999999999 699999999976432 23347899997654
No 36
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=100.00 E-value=4.2e-42 Score=346.12 Aligned_cols=211 Identities=14% Similarity=0.230 Sum_probs=159.1
Q ss_pred EEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCc------c---CCcCCCCCeEEEEEEe
Q 009054 50 QGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYG------T---TCPIPPGKNFTYILQV 120 (545)
Q Consensus 50 ~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~------~---q~~i~pG~~~~y~~~~ 120 (545)
...++| ++|||+|||++||+|+|+|+|.|+++++|||||++.. ..+||++. + ||+|+||++|+|+|++
T Consensus 50 ~~~~~n-~~pGP~I~v~~Gd~v~v~~~N~l~~~~siH~HGl~~~--~~~dG~~~~dg~~~~~~~~~~I~PG~~~~Y~f~~ 126 (306)
T 1sdd_A 50 PQSRTS-GLLGPTLYAEVGDIMKVHFKNKAHKPLSIHAQGIKYS--KFSEGASYSDHTLPMEKMDDAVAPGQEYTYEWII 126 (306)
T ss_dssp CCCSSC-CSCCCCEEEETTCEEEEEEEECSSSCBCCEEESSCCC--TTTSCCCSCCCCCHHHHTTTCBCTTCEEEEEEEC
T ss_pred cccccC-CccCCEEEEeCCCEEEEEEEECCCCcccEeecceecc--cccCCCccCCCCcccccCCCccCCCCeEEEEEEe
Confidence 345678 5899999999999999999999999999999999843 34566553 2 6999999999999997
Q ss_pred CCc---------ceeeeeecCchh--hhhcCeeeEEEEeCCCCC---CCCCCCCCCcceEEEeeeeecchhhHHHhhccC
Q 009054 121 KDQ---------IGSYFYFPSVGF--QKAAGGFGGIRILSRPLI---PVPFPEPAGDFTVLIGDWYKANHNKLKSVLDRG 186 (545)
Q Consensus 121 ~~~---------~Gt~wYH~H~~~--~~~~Gl~G~liV~~~~~~---~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~ 186 (545)
+++ +||||||||... |+.+||+|+|||+++... ..+. ..|+|++++++||..+. .+ .
T Consensus 127 ~~~~gp~~~d~~~GT~wYHsH~~~~~q~~~GL~G~liV~~~~~~~~~~~~~-~~d~e~~l~~~d~d~~~--~~------~ 197 (306)
T 1sdd_A 127 SEHSGPTHDDPPCLTHIYYSYVNLVEDFNSGLIGPLLICKKGTLTEDGTQK-MFEKQHVLMFAVFDESK--SW------N 197 (306)
T ss_dssp CGGGSCCSSSCSEEEEEEECCSSSHHHHHTTCCEEEEEECTTCBCTTSSBS-SSCCCCCCBCCEEETTS--SS------S
T ss_pred CCccCCCCCCCCceEEEEeccCCchhhhccCceEEEEEccCCCCCccCCcC-cccceEEEEEEeccccc--cc------c
Confidence 544 379999999874 889999999999986421 1122 34789999999984221 10 0
Q ss_pred CCCCCCCeEEEcccCC-CCceEEEeCCcEEEEEEEecCCC-CeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceEE
Q 009054 187 HRLPSPDGILINGHGS-NGASFTVEQGKTYRFRISNVGLQ-HSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSYS 264 (545)
Q Consensus 187 ~~~~~~~~~liNG~~~-~~~~~~v~~G~~~rlRliNa~~~-~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~d 264 (545)
...++.++|||+.+ ..|.++|++|+++||||+|+|.. ..+.|+++||.|.+ ||. .+|++.|.||||+|
T Consensus 198 --~~~~~~~~ING~~~~~~p~l~v~~G~~vrlrliN~g~~~~~h~~hlhG~~~~~---dG~-----~~dtv~l~pger~~ 267 (306)
T 1sdd_A 198 --QTSSLMYTVNGYVNGTMPDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQ---NHH-----KISAITLVSATSTT 267 (306)
T ss_dssp --CCCCEEECSSSCCSSCCCCCCCCCC------BBCCCSSSCEECCBCSSTTCEE---TTE-----ECSCCCEETTCCBC
T ss_pred --cCCCcceeeCCEecCCCcceEEcCCCEEEEEEEeCCCCCccEEEEECCcEeee---CCE-----EcceEEECCCcEEE
Confidence 12357899999986 34789999999999999999987 57789999999975 873 58999999999999
Q ss_pred EEEEeCCCCcceEEEEeec
Q 009054 265 VLVTMDQPPQDFYIAVSTR 283 (545)
Q Consensus 265 v~v~~~~~~g~y~~~~~~~ 283 (545)
|+++++ .+|.|+++|+..
T Consensus 268 v~~~~~-~pG~~~~hch~~ 285 (306)
T 1sdd_A 268 ANMTVS-PEGRWTIASLIP 285 (306)
T ss_dssp ---------CCCCCBCCST
T ss_pred EEEEcC-CCeEEEEEeCCh
Confidence 999998 689999999854
No 37
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=100.00 E-value=8.8e-41 Score=372.11 Aligned_cols=249 Identities=12% Similarity=0.119 Sum_probs=196.7
Q ss_pred cCCCeEEEEEEEEEEEe--cCCCe----------------e-EEEEEE-----cC-----------cccCceEEEecCCE
Q 009054 26 AESPYRFFTWNVTYGDI--YPLGV----------------R-QQGILI-----NG-----------QFPGPDIYSVTNDN 70 (545)
Q Consensus 26 ~~~~~~~~~l~~~~~~~--~~dG~----------------~-~~~~~~-----ng-----------~~pgP~i~v~~Gd~ 70 (545)
....+|+|.|.+++... +|+|. + .-.+.| ++ ++|||+|||++||+
T Consensus 129 ~~g~~r~y~i~a~e~~wdyap~~~~~~~~~~~~~~~g~~y~k~~~~~y~~~~f~~~~~~~~~~~~l~~pGP~Ir~~~GD~ 208 (770)
T 2r7e_B 129 FQKKTRHYFIAAVERLWDYGMSSSPHVLRNRAQSGSVPQFKKVVFQEFTDGSFTQPLYRGELNEHLGLLGPYIRAEVEDN 208 (770)
T ss_dssp CCCCCEEEEEEEEECCCCCCSCCCCTTTTSSCCCCCCCCCCCEEEEECSSSCTTTTCCCCSTTTTCCSCCCCCCCCSSSC
T ss_pred CCCCEEEEEEEEEEEEEeecCCCcccccccccccccccceeeEEEEEeccCceeccccccccccccCCCCCeEEEEcCCE
Confidence 35678999999999874 56553 1 223333 33 58999999999999
Q ss_pred EEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCC---------cceeeeeecCchh--hhhc
Q 009054 71 LIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKD---------QIGSYFYFPSVGF--QKAA 139 (545)
Q Consensus 71 v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~---------~~Gt~wYH~H~~~--~~~~ 139 (545)
|+|+|+|.|+++++|||||+++..... ||+++.||+|+||++|+|+|++++ ++||||||||.+. |+.+
T Consensus 209 v~v~~~N~l~~~~siH~HG~~~~~~~~-dG~~~~~~~I~PG~~~tY~f~~~~~~gp~~~d~~~Gt~wYHsh~~~~~q~~~ 287 (770)
T 2r7e_B 209 IMVTFRNQASRPYSFYSSLISYEEDQR-QGAEPRKNFVKPNETKTYFWKVQHHMAPTKDEFDCKAWAYSSDVDLEKDVHS 287 (770)
T ss_dssp EEEEEECCSSSCCCCCBTTCCCCCCSS-SCTTTTSSCCCSSCEEEEECCCCSSSSCCSSCCSEEEEEECCCSSSSHHHHT
T ss_pred EEEEEEECCCCCcceeecccccccccC-CCCcCccCccCCCCeEEEEEEecCccCCccCCCCCeeEEeeccCCcHHHHhC
Confidence 999999999999999999999976543 699888999999999999999864 7999999999984 8999
Q ss_pred CeeeEEEEeCCCCCCC--CCCCCCCcceEEEeee------eecchhhHHHhhc-cCC-------CCCCCCeEEEcccCC-
Q 009054 140 GGFGGIRILSRPLIPV--PFPEPAGDFTVLIGDW------YKANHNKLKSVLD-RGH-------RLPSPDGILINGHGS- 202 (545)
Q Consensus 140 Gl~G~liV~~~~~~~~--~~~~~~~e~~l~~~d~------~~~~~~~~~~~~~-~~~-------~~~~~~~~liNG~~~- 202 (545)
||+|+|||+++..... .....++|++|+++++ +++.. +..+.. ... .....+.++|||+..
T Consensus 288 GL~G~liV~~~~~~~~~~~~~~~d~E~vl~~~~~de~~swy~~~~--~~~~~~~p~~~~~~d~~~~~~~~~~~ING~~~~ 365 (770)
T 2r7e_B 288 GLIGPLLVCHTNTLNPAHGRQVTVQEFALFFTIFDETKSWYFTEN--MERNCRAPCNIQMEDPTFKENYRFHAINGYIMD 365 (770)
T ss_dssp SCCEEEEEECSTTSCSSSCCCCSSEEEECCCCEECCSSSSCTTGG--GSSCSCCSSCCCSSSSSSTTTSCEECTTSCTTT
T ss_pred CceeeEEECCCcccccccCCCccceEEEEEEeecCccccchhccc--hhhcccCccccccCCccccccCCccccCCccCC
Confidence 9999999999753211 1123478998887654 33321 111110 000 011245689999986
Q ss_pred CCceEEEeCCcEEEEEEEecCCC-CeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceEEEEEEeCCCCcceEEEEe
Q 009054 203 NGASFTVEQGKTYRFRISNVGLQ-HSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQPPQDFYIAVS 281 (545)
Q Consensus 203 ~~~~~~v~~G~~~rlRliNa~~~-~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~ 281 (545)
..+.++|++|++|||||+|++.. ..+.|||+||.|+|++.||. .+|++.|.||||++|+++++ .||.|.++|+
T Consensus 366 ~~~~l~v~~Ge~vr~rliN~g~~~~~H~fHlhGh~f~Vv~~dg~-----~~Dtv~l~Pg~~~~v~~~ad-~pG~w~~hcH 439 (770)
T 2r7e_B 366 TLPGLVMAQDQRIRWYLLSMGSNENIHSIHFSGHVFTVRKKEEY-----KMALYNLYPGVFETVEMLPS-KAGIWRVECL 439 (770)
T ss_dssp TCCCCCCCSSSCEEEECCCCCSSSCCCEEEBSSCCEECCSSSCC-----EESEEECCTTCCCEEEECCS-SCBCCCBCCC
T ss_pred CCCCeEEeCCCEEEEEEEeCCCCcceEEEEEcCCEEEEEecCCc-----eeeEEEECCCeEEEEEEEeC-CCCceEEEec
Confidence 34779999999999999999975 47899999999999999974 78999999999999999999 6899999999
Q ss_pred ec
Q 009054 282 TR 283 (545)
Q Consensus 282 ~~ 283 (545)
..
T Consensus 440 ~~ 441 (770)
T 2r7e_B 440 IG 441 (770)
T ss_dssp SH
T ss_pred cc
Confidence 65
No 38
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=100.00 E-value=2.5e-37 Score=343.87 Aligned_cols=216 Identities=20% Similarity=0.254 Sum_probs=168.8
Q ss_pred cccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCC-----CCCcc-CCcCCCCCeEEEEEEeCCcce-----
Q 009054 57 QFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYED-----GVYGT-TCPIPPGKNFTYILQVKDQIG----- 125 (545)
Q Consensus 57 ~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~D-----Gv~~~-q~~i~pG~~~~y~~~~~~~~G----- 125 (545)
.+|||+||+++||+|+|+|+|.|++++||||||+++. ++++| |++++ ||+|+||++|+|+|++++++|
T Consensus 448 g~pGP~Ir~~~GD~v~v~~~N~l~~~~siHwHGl~~~-~~~~DG~~~~G~~~~~~~~I~PG~t~tY~f~~~~~agPg~~d 526 (742)
T 2r7e_A 448 GILGPLLYGEVGDTLLIIFKNQASRPYNIYPHGITDV-RPLYSRRLPKGVKHLKDFPILPGEIFKYKWTVTVEDGPTKSD 526 (742)
T ss_dssp CSCCCCCCCBTTCEEECCEECCSSSCBCCEETTCSEE-CCTTCSCCSSSCSSTTTSCCBSSCEECCEEECCSTTSCCSSS
T ss_pred CCCCCeEEEECCCEEEEEEEeCCCCCcCEEecccccC-CcccccccCCCCcccccccCCCCCeEEEEEEeccccCCcccC
Confidence 5799999999999999999999999999999999874 45565 55666 999999999999999876554
Q ss_pred ----eeeeecCch--hhhhcCeeeEEEEeCCCCCC---CCCCCCCCcceEEEeeeeecch----hhHHHhhc-cC-CCC-
Q 009054 126 ----SYFYFPSVG--FQKAAGGFGGIRILSRPLIP---VPFPEPAGDFTVLIGDWYKANH----NKLKSVLD-RG-HRL- 189 (545)
Q Consensus 126 ----t~wYH~H~~--~~~~~Gl~G~liV~~~~~~~---~~~~~~~~e~~l~~~d~~~~~~----~~~~~~~~-~~-~~~- 189 (545)
|||||||.+ .|+++||+|+|||+++.... .+. ..|+|++|++++|..+.+ ..+..+.. .. ...
T Consensus 527 ~~~gT~wYHsH~~~~~q~~~GL~G~lIV~~~~~~~~~~~~~-~~d~E~~l~~~~fde~~~wy~~~~~~~~~~~p~~v~~~ 605 (742)
T 2r7e_A 527 PRCLTRYYSSFVNMERDLASGLIGPLLICYKESVDQRGNQI-MSDKRNVILFSVFDENRSWYLTENIQRFLPNPAGVQLE 605 (742)
T ss_dssp CSCCCCEEECCSSSSSTGGGSCCEECCCBCCCSCCCCCCSS-CCSCCCEEEECBCCGGGSSCSHHHHHHHSSSSSCSCCC
T ss_pred CCceEEEEecCcchhhhhhccceeeEEEcCccccccccCcC-CCCceEEEEeeccccccccccccchhhcccCchhcccc
Confidence 999999998 47899999999999864211 111 458899999976532111 11111111 00 000
Q ss_pred -----CCCCeEEEcccCCCCceEEEeCCcEEEEEEEecCCC-CeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceE
Q 009054 190 -----PSPDGILINGHGSNGASFTVEQGKTYRFRISNVGLQ-HSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSY 263 (545)
Q Consensus 190 -----~~~~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~-~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~ 263 (545)
.....++|||+.+....+.+++|++|||||+|++.. ..+.|||+||.|+|+ +..+|++.|.||||+
T Consensus 606 ~~~~~~~~~~~~ING~~~~~~~l~v~~Ge~vr~rliN~g~~~~~h~~HlhGh~f~v~--------~~~~Dtv~l~Pg~~~ 677 (742)
T 2r7e_A 606 DPEFQASNIMHSINGYVFDSLQLSVCLHEVAYWYILSIGAQTDFLSVFFSGYTFKHK--------MVYEDTLTLFPFSGE 677 (742)
T ss_dssp CHHHHGGGCCBCTTTTCSSCCCCCCCSSCCCEEEEEECSSCCCCCCCEESSSCCCCB--------SSSBCSSCCCCCSSE
T ss_pred cccccccCceeeecCcCCCCCcEEEeCCCEEEEEEEeCCCCcceEEEEEcCcEEEEe--------ccceeEEEECCCcEE
Confidence 011347899998633358999999999999998764 468999999999986 567899999999999
Q ss_pred EEEEEeCCCCcceEEEEeec
Q 009054 264 SVLVTMDQPPQDFYIAVSTR 283 (545)
Q Consensus 264 dv~v~~~~~~g~y~~~~~~~ 283 (545)
+|+|+++ .||.|.++|+..
T Consensus 678 ~v~~~ad-~pG~w~~hcH~~ 696 (742)
T 2r7e_A 678 TVFMSME-NPGLWILGCHNS 696 (742)
T ss_dssp ECCEECC-CCCCSCCEECCC
T ss_pred EEEEEcC-CCeEEEEEeCCc
Confidence 9999998 689999999965
No 39
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=99.97 E-value=5.2e-30 Score=255.69 Aligned_cols=228 Identities=15% Similarity=0.161 Sum_probs=164.8
Q ss_pred CCeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceEEEEEEeCC
Q 009054 192 PDGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQ 271 (545)
Q Consensus 192 ~~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 271 (545)
...+++||+.. .|.|+++.|+++++|+.|.... .+.+|++|.. ..+.||.+.. +...|.||+++++.++++
T Consensus 54 ~~~~~~ng~~p-gP~i~~~~Gd~v~v~~~N~~~~-~~~iH~HG~~--~~~~DG~p~~----~~~~i~PG~~~~y~f~~~- 124 (288)
T 3gdc_A 54 FKGWSYNGRIP-GPTLWAREGDALRIHFTNAGAH-PHTIHFHGVH--RATMDGTPGI----GAGSIAPGQSFTYEFDAT- 124 (288)
T ss_dssp EEEEEETTBSS-CCEEEEETTCEEEEEEEECSSS-CBCCEESSCC--CGGGSCCTTS----TTCSBCTTCEEEEEEECC-
T ss_pred EEEEEECCccC-CCcEEEeCCCEEEEEEEeCCCC-cccEEecccc--ccccCCCCCc----cceeECCCCEEEEEEEcC-
Confidence 36899999975 5999999999999999999874 5689999975 4578998642 345689999999999997
Q ss_pred CCcceEEEEeeccc-CC-ccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCccccc
Q 009054 272 PPQDFYIAVSTRFT-NK-VLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGLIN 349 (545)
Q Consensus 272 ~~g~y~~~~~~~~~-~~-~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~ 349 (545)
.+|.||++|+.... .+ .....+.|.+..... . |..+
T Consensus 125 ~~Gt~~yH~H~~~~~~~~~~Gl~G~liV~~~~~-----~---~~~d---------------------------------- 162 (288)
T 3gdc_A 125 PFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKEG-----R---PPAD---------------------------------- 162 (288)
T ss_dssp SCEEEEEECCCSSHHHHHHTTCEEEEEEECSSC-----C---CCCS----------------------------------
T ss_pred CCccEEEEecCcchHHHHhCcCeEEEEEeCCcc-----C---CCCc----------------------------------
Confidence 79999999996421 11 111223333322110 0 1000
Q ss_pred cceEEEeeccc---cccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcEEEE
Q 009054 350 ISRTIKLESSA---GQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFIEI 426 (545)
Q Consensus 350 ~~~~~~l~~~~---~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~ 426 (545)
+++.+.... ........|+|||+.|... ...+.++.|++|+|
T Consensus 163 --~e~~l~~~d~~~~~g~~~~~~~iNG~~~~~~---------------------------------~~~l~v~~Ge~vr~ 207 (288)
T 3gdc_A 163 --DEMVMVMNGYNTDGGDDNEFYSVNGLPFHFM---------------------------------DFPVKVKQHELVRI 207 (288)
T ss_dssp --EEEEEEEEEECCSSTTCCSEEEETTSTTHHH---------------------------------HSCEEEETTCCEEE
T ss_pred --ceEEEEEeeEecCCCCCcceEEECccccccc---------------------------------CcccccCCCCEEEE
Confidence 111110000 0001123589999876321 01246789999999
Q ss_pred EEEcCCCC--CCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccceeeeecchhhh
Q 009054 427 VFQNHENI--VQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMWNVRSEFWARQ 504 (545)
Q Consensus 427 ~i~N~~~~--~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~ 504 (545)
.|.|.+.. .|||||||+.|+|++.+.. +..|.++||+.|+|++++.|+|++++||.|+||||+++|+
T Consensus 208 ~l~N~g~~~~~H~fHlhG~~f~v~~~g~~-----------~~~~~~~Dtv~v~pg~~~~v~~~~~~pG~~~~hCH~~~H~ 276 (288)
T 3gdc_A 208 HLINVLEYDPINSFHIHGNFFHYYPTGTM-----------LTPSEYTDTISQVQGQRGILELRFPYPGKFMFHAHKTEFA 276 (288)
T ss_dssp EEEECCCSSSEEEEEETTCCEEEEETTCC-----------SSCSEEESEEEEETTCEEEEEECCCSCEEEEEECSSHHHH
T ss_pred EEEeCCCCCcceeEEEcCCEEEEEcCCCc-----------cCCCceeeEEEeCCCceEEEEEECCCCEEEEEEecChHHH
Confidence 99999853 5999999999999975431 2245899999999999999999999999999999999999
Q ss_pred hcceEEEEEEeC
Q 009054 505 YLGQQFYLRVYS 516 (545)
Q Consensus 505 d~GMm~~~~V~~ 516 (545)
+.|||..|+|.+
T Consensus 277 ~~GM~~~~~V~~ 288 (288)
T 3gdc_A 277 ELGWMGFFEVSA 288 (288)
T ss_dssp TTTCEEEEEEEC
T ss_pred hcCCCEEEEEeC
Confidence 999999999963
No 40
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=99.96 E-value=3.8e-29 Score=252.55 Aligned_cols=247 Identities=14% Similarity=0.165 Sum_probs=168.8
Q ss_pred CeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeE-EEeecCccceeeEEeEEEEccCceEEEEEEeCC
Q 009054 193 DGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMK-LVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQ 271 (545)
Q Consensus 193 ~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~-via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 271 (545)
..+++||+.. .|.|+++.|+++++|+.|... ....+|++|.... ..+.||.+. +....|.||++++..++++
T Consensus 23 ~~~~~ng~~p-GP~i~~~~Gd~v~v~~~N~l~-~~~siH~HG~~~~~~~~~DG~p~----~t~~~i~PG~~~~y~f~~~- 95 (318)
T 3g5w_A 23 HTFAFNGQVP-APLIHVMEGDDVTVNVTNMTT-LPHTIHWHGMLQRGTWQSDGVPH----ATQHAIEPGDTFTYKFKAE- 95 (318)
T ss_dssp EEEEETTBSS-CCEEEEETTCEEEEEEEECSS-SCBCCEEETCCCTTCGGGSCCBT----TTBCCBCTTCEEEEEEECC-
T ss_pred EEEEECCccC-CceEEEeCCCEEEEEEEeCCC-CceeEEecCcCCCCCcccCCCcc----cccccCCCCCEEEEEEEcC-
Confidence 5899999874 599999999999999999986 4568899987654 236799763 2235789999999999998
Q ss_pred CCcceEEEEeecccCCc--cceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCccccc
Q 009054 272 PPQDFYIAVSTRFTNKV--LTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGLIN 349 (545)
Q Consensus 272 ~~g~y~~~~~~~~~~~~--~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~ 349 (545)
.+|+||++++.....+. ....+.|.+..... .+.+.. .+.+..+. ..+ +...... .. ... .
T Consensus 96 ~~Gt~wYH~H~~~~~~~~~~Gl~G~lIV~~~~~---~~~~~~--~d~e~~l~-l~d--w~~~~~~-~~-~~~-----~-- 158 (318)
T 3g5w_A 96 PAGTMWYHCHVNVNEHVTMRGMWGPLIVEPKNP---LPIEKT--VTKDYILM-LSD--WVSSWAN-KP-GEG-----G-- 158 (318)
T ss_dssp SCEEEEEECCSSHHHHHHHSCCEEEEEEECSSC---CHHHHT--CCEEEEEE-EEE--ECGGGTT-CT-TCC-----C--
T ss_pred CCEEEEEEccCChhhhhccCCCEEEEEEcCCCc---cccccc--ccceeEEE-EEe--ecccccc-cc-ccC-----C--
Confidence 69999999996421110 11223333332211 000000 01000000 000 0000000 00 000 0
Q ss_pred cceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcEEEEEEE
Q 009054 350 ISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFIEIVFQ 429 (545)
Q Consensus 350 ~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~ 429 (545)
. .......|.|||+.|.. ...+.++.|++++|.|.
T Consensus 159 ---------~--~~~~~d~~~ING~~~~~----------------------------------~~~l~v~~G~~vrlrli 193 (318)
T 3g5w_A 159 ---------I--PGDVFDYYTINAKSFPE----------------------------------TQPIRVKKGDVIRLRLI 193 (318)
T ss_dssp ---------C--TTCCCCEEEETTBCBTS----------------------------------SCCEEECTTCEEEEEEE
T ss_pred ---------C--CCCcCcEEEEcCcCCCC----------------------------------CccEEeCCCCEEEEEEE
Confidence 0 00112358999987531 11257899999999999
Q ss_pred cCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccceeeeecchhhhh----
Q 009054 430 NHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMWNVRSEFWARQY---- 505 (545)
Q Consensus 430 N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~d---- 505 (545)
|.+...||||||||+|+|++++++. +.+|.++||+.|+|++++.|+|+++|||.|+||||+++|++
T Consensus 194 N~~~~~h~~hlhGh~f~vi~~dG~~----------~~~p~~~dtv~l~pger~~v~~~a~~pG~w~~hCH~~~H~~~g~~ 263 (318)
T 3g5w_A 194 GAGDHVHAIHTHGHISQIAFKDGFP----------LDKPIKGDTVLIGPGERYDVILNMDNPGLWMIHDHVDTHTTNGDK 263 (318)
T ss_dssp ECSSSCEEEEETTSCEEEEEETTEE----------EEEEEEESEEEECTTCEEEEEEECCSCSEEEEEESSGGGSCBTTB
T ss_pred eCCCceEEEEECCcEEEEEecCCcc----------cCCCccccEEEECCCCEEEEEEECCCCeeEEEEeccHHHhhccCc
Confidence 9998899999999999999986432 23577899999999999999999999999999999999998
Q ss_pred --cceEEEEEEeCCC
Q 009054 506 --LGQQFYLRVYSPV 518 (545)
Q Consensus 506 --~GMm~~~~V~~~~ 518 (545)
.|||..++|...+
T Consensus 264 ~~~Gm~~~i~~~g~~ 278 (318)
T 3g5w_A 264 PDGGIMTTIEYEEVG 278 (318)
T ss_dssp SSCBSEEEEEETTTC
T ss_pred CCCCCEEEEEECCCC
Confidence 6899999997654
No 41
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=99.96 E-value=8.9e-29 Score=252.45 Aligned_cols=244 Identities=14% Similarity=0.143 Sum_probs=164.8
Q ss_pred CCeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEee---cCccceeeEEeEEEEccCceEEEEEE
Q 009054 192 PDGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEV---EGTHTIQTTYSSLDVHVGQSYSVLVT 268 (545)
Q Consensus 192 ~~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~---DG~~~~p~~~~~v~l~pgeR~dv~v~ 268 (545)
...+++||+.. .|.|++++|+++|+||+|.+... ..+|. |-+.+.+. ||.+. +....|.||||+++.++
T Consensus 23 ~~~~~~NG~~p-GP~I~v~~Gd~v~v~v~N~l~~~-~siH~--HG~~~~~~~~~DGvp~----vtq~~I~PG~~~~y~f~ 94 (339)
T 2zwn_A 23 YKVFGFNGQVP-GPLIHVQEGDDVIVNVTNNTSLP-HTIHW--HGVHQKGTWRSDGVPG----VTQQPIEAGDSYTYKFK 94 (339)
T ss_dssp EEEEEETTBSS-CCEEEEETTCEEEEEEEEESSSC-BCCEE--ETCCCTTCGGGSCCBT----TTBCCBCTTCEEEEEEE
T ss_pred EEEEEECCccC-CCeEEEECCCEEEEEEEECCCCC-ccEEe--CCCCcCCCcccCCCCc----cccCccCCCCeEEEEEE
Confidence 36899999963 49999999999999999998743 34444 55556664 99863 23457999999999999
Q ss_pred eCCCCcceEEEEeeccc---C-CccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCC
Q 009054 269 MDQPPQDFYIAVSTRFT---N-KVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTASGPRPNPQGSYH 344 (545)
Q Consensus 269 ~~~~~g~y~~~~~~~~~---~-~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~ 344 (545)
++ .+|+||++++.... . ..+.+.-++ ..... ..++.....+....+ .+ +..... ..+....
T Consensus 95 ~~-~~Gt~wyH~H~~~~~q~~~~Gl~G~liV--~p~~~---~~~~~~~d~e~~l~l---~d--~~~~~~-~~~~~~g--- 159 (339)
T 2zwn_A 95 AD-RIGTLWYHCHVNVNEHVGVRGMWGPLIV--DPKQP---LPIEKRVTKDVIMMM---ST--WESAVA-DKYGEGG--- 159 (339)
T ss_dssp CC-SCEEEEEECCSSHHHHTTTSCCEEEEEE--ECSSC---CTTGGGCSEEEEEEE---EE--ECGGGT-TCTTCCC---
T ss_pred CC-CCEEEEEEecCCchhhhhcCCceEeEEe--cCCCc---ccccccCCceEEEEe---eh--eecccc-cccCCCC---
Confidence 98 68999999985431 1 222222222 22111 011110001110000 00 000000 0000000
Q ss_pred ccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcEE
Q 009054 345 YGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFI 424 (545)
Q Consensus 345 ~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v 424 (545)
. .......|.|||+.|.. ...+.++.|+++
T Consensus 160 -------------~---~~~~~~~~~ING~~~~~----------------------------------~~~~~v~~G~~v 189 (339)
T 2zwn_A 160 -------------T---PMNVADYFSVNAKSFPL----------------------------------TQPLRVKKGDVV 189 (339)
T ss_dssp -------------S---TTSCCCEEEETTBCTTS----------------------------------SCCEEECTTCEE
T ss_pred -------------C---CccccceEEEccccCCC----------------------------------cccEEECCCCEE
Confidence 0 00112358899976421 123578899999
Q ss_pred EEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccceeeeecchhh-
Q 009054 425 EIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMWNVRSEFWAR- 503 (545)
Q Consensus 425 ~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H- 503 (545)
+|.|.|.+...||||||||+|+|++.++.. +.+|.++||+.|+|++++.|+|++|+||.|++|||+++|
T Consensus 190 rlrliN~~~~~h~~hlhGh~f~vi~~DG~~----------~~~p~~~dtv~l~pg~r~~v~~~~~~pG~w~~hch~~~H~ 259 (339)
T 2zwn_A 190 KIRFFGAGGGIHAMHSHGHDMLVTHKDGLP----------LDSPYYADTVLVSPGERYDVIIEADNPGRFIFHDHVDTHV 259 (339)
T ss_dssp EEEEEECSSSCEEEEETTCCEEEEEETTEE----------EEEEEEESEEEECTTCEEEEEEECCSCSEEEEEECCGGGS
T ss_pred EEEEEeCCCceEEEEECCcEEEEEEeCCee----------cCCCcEEEEEEECCCCEEEEEEEeCCCeeEEEEEechhhc
Confidence 999999998899999999999999985432 234778999999999999999999999999999999999
Q ss_pred -----hhcceEEEEEEeCCC
Q 009054 504 -----QYLGQQFYLRVYSPV 518 (545)
Q Consensus 504 -----~d~GMm~~~~V~~~~ 518 (545)
++.|||..+++....
T Consensus 260 ~~~~~~~~gm~a~l~~~g~~ 279 (339)
T 2zwn_A 260 TAGGKHPGGPITVIEYDGVP 279 (339)
T ss_dssp CBTTBSSCSSEEEEEETTSC
T ss_pred ccccccCCCcEEEEEECCCC
Confidence 889999999987543
No 42
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=99.95 E-value=6.5e-27 Score=235.92 Aligned_cols=218 Identities=13% Similarity=0.094 Sum_probs=155.8
Q ss_pred cccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceEEEEEEeC-------
Q 009054 198 NGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMD------- 270 (545)
Q Consensus 198 NG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~------- 270 (545)
||... .|.|+++.|++++++|.|.... ...+|.+|..+. -+.||.+.. .-.|.||+.+...+++.
T Consensus 36 ~~t~P-GP~i~~~~Gd~v~v~~~N~l~~-~~siH~HG~~~~-~~~dG~~~~-----~~~i~PG~~~~Y~~~~~~P~~~~~ 107 (313)
T 3tas_A 36 KATIP-GPLIELNEGDTLHIEFENTMDV-PVSLHVHGLDYE-ISSDGTKQS-----RSDVEPGGTRTYTWRTHVPGRRAD 107 (313)
T ss_dssp CCBSS-CCCEEEETTCEEEEEEEECSSS-CBCCEESSSBCC-GGGSCSTTT-----TCCBCTTCEEEEEEBCCCCEECTT
T ss_pred Ccccc-CCeEEEECCCEEEEEEEECCCC-CccEeecCCcCC-ccCCCCccc-----cCCcCCCCEEEEEEEeccCCcccc
Confidence 44432 5999999999999999998874 458899987654 357887642 12378999998888764
Q ss_pred -----CCCcceEEEEeecccCC-------ccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCC
Q 009054 271 -----QPPQDFYIAVSTRFTNK-------VLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTASGPRPN 338 (545)
Q Consensus 271 -----~~~g~y~~~~~~~~~~~-------~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~ 338 (545)
+..|.||++++.....+ .+.+.-|++ ... .
T Consensus 108 ~~~~~~~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~--~~~----------~-------------------------- 149 (313)
T 3tas_A 108 GTWRAGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVR--RKG----------D-------------------------- 149 (313)
T ss_dssp SCEECCSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEE--CTT----------C--------------------------
T ss_pred ccccCCCceEEEEeecCcccccchhhhhccccCceEee--ccc----------c--------------------------
Confidence 23588999988532211 122222221 100 0
Q ss_pred CCCCCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEec
Q 009054 339 PQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGA 418 (545)
Q Consensus 339 p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 418 (545)
...++++.+..+ .|++|+..+.. ...+.+
T Consensus 150 ---------~~~d~e~~l~~~--------d~t~Ng~~~~~----------------------------------~~~l~v 178 (313)
T 3tas_A 150 ---------VLPDRTHTIVFN--------DMTINNRPAHT----------------------------------GPDFEA 178 (313)
T ss_dssp ---------BCCSEEEEEEEE--------TTEETTCCTTC----------------------------------CCCEEE
T ss_pred ---------ccccccceeecc--------chhcccCCccc----------------------------------cccccc
Confidence 002333333321 17888865421 112567
Q ss_pred CCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEe---CCcccee
Q 009054 419 DFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVAL---DNVGMWN 495 (545)
Q Consensus 419 ~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~a---dnpG~w~ 495 (545)
+.|++|+|.|.|.+.+.||||||||.|+|+.++... .....+.++||+.|.|++.+.+++.+ +|||.|+
T Consensus 179 ~~Ge~vr~~liN~g~~~hpfHlHGh~F~v~~~~~~~--------~~~~~~~~~Dtv~l~Pger~~v~v~a~~~~nPG~w~ 250 (313)
T 3tas_A 179 TVGDRVEFVMITHGEYYHTFHLHGHRWADNRTGMLT--------GPDDPSQVIDNKICGPADSFGFQVIAGEGVGAGAWM 250 (313)
T ss_dssp ETTCEEEEEEEEESSCCEEEEETTCCEESSTTSSCC--------STTCCCCEESEEEECTTCEEEEEEETTTTTCSEEEE
T ss_pred ccCCEEEEEEecccccceeeeecCCeeEEEEECCcc--------CCCCCCeeeeEEEeCCCcceEEEEEeccCCCCEeEE
Confidence 899999999999999999999999999999875421 12235789999999999998887765 6899999
Q ss_pred eeecchhhhhcceEEEEEEeCCCcc
Q 009054 496 VRSEFWARQYLGQQFYLRVYSPVES 520 (545)
Q Consensus 496 ~HCHil~H~d~GMm~~~~V~~~~~~ 520 (545)
||||+++|++.|||..|.|.+++..
T Consensus 251 ~HCHi~~H~~~GM~~~f~V~~~d~~ 275 (313)
T 3tas_A 251 YHCHVQSHSDMGMVGLFLVKKPDGT 275 (313)
T ss_dssp EEECSHHHHHTTCEEEEEEECTTCC
T ss_pred EEeCChHHHHCCCeEEEEEECCCCC
Confidence 9999999999999999999998753
No 43
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=99.95 E-value=6.6e-27 Score=234.09 Aligned_cols=219 Identities=13% Similarity=0.071 Sum_probs=155.3
Q ss_pred cccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceEEEEEEeCC------
Q 009054 198 NGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQ------ 271 (545)
Q Consensus 198 NG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~------ 271 (545)
||... .|+|+++.|++++++|.|.... ...+|.+|..+. -+.||.++. .-.|.|||.+...++++.
T Consensus 52 ~gt~P-GP~i~~~~GD~v~v~~~N~l~~-~~siH~HG~~~~-~~~DG~~~~-----~~~i~PG~t~~Y~~~~~~~~~~~~ 123 (299)
T 3t9w_A 52 GATVP-GPVLEMWEGDTLEIDLVNTTDR-VLSLHPHGVDYD-VNSDGTLMN-----GSAVMPGQTRRYTWRSHVGYRRAD 123 (299)
T ss_dssp CCBSS-CCCEEEETTCEEEEEEEECSSS-CBCCEESSSBCC-GGGSCCTTT-----TCCBCTTCEEEEEEBCCCCEECTT
T ss_pred CCCcc-CceEEEECCeEEEEEEEECCCC-CccEEeCCcccC-CccCCCccc-----cCccCCCCeEEEEEEeecccccCC
Confidence 67664 6999999999999999999874 568899987654 367997642 124789999998888752
Q ss_pred ------CCcceEEEEeecccCCc-----cceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCC
Q 009054 272 ------PPQDFYIAVSTRFTNKV-----LTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTASGPRPNPQ 340 (545)
Q Consensus 272 ------~~g~y~~~~~~~~~~~~-----~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~ 340 (545)
.+|.||++++....... ....+.|....... +
T Consensus 124 ~~~~~~~~gt~~YH~H~~~~~~~~~~~~~GL~G~liV~~~~~----------------------------------~--- 166 (299)
T 3t9w_A 124 GSWAEGTAGYWHYHDHAMGTEHGTEGVLKGLYGALVVRRQGD----------------------------------L--- 166 (299)
T ss_dssp SCEECCCCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTC----------------------------------C---
T ss_pred CcCCCCCceeEEEecCCcccccchhhhcccccceEEEecccc----------------------------------c---
Confidence 46899999875321110 01112222211000 0
Q ss_pred CCCCccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCC
Q 009054 341 GSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADF 420 (545)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 420 (545)
..++++.+... .|.+|++.+.. ...+.++.
T Consensus 167 --------~~d~e~~l~~~--------~~~~Ng~~~~~----------------------------------~p~l~v~~ 196 (299)
T 3t9w_A 167 --------LPKRQFTVVFN--------DMMINNRAHHD----------------------------------APTFEANL 196 (299)
T ss_dssp --------CCSEEEEEEEE--------TTEETTCCTTC----------------------------------CCEEEEET
T ss_pred --------Cccccceeeee--------eeeecCccccc----------------------------------cccceecC
Confidence 01333433321 26788876421 12357889
Q ss_pred CcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEE---EEeCCccceeee
Q 009054 421 RGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIY---VALDNVGMWNVR 497 (545)
Q Consensus 421 g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~ir---f~adnpG~w~~H 497 (545)
|++|+|+|.|.+.+.||||||||.|+|+.++.... ....+.++||+.|.|++...++ |+++|||.|+||
T Consensus 197 Ge~Vr~~liN~~~~~HpfHlHGh~F~v~~~g~~~~--------~~~~~~~~Dtv~v~PGe~~~~~via~~~dnPG~w~~H 268 (299)
T 3t9w_A 197 GERVEWIAIGHGSNFHTFHLHGHRWLDNRTGMRTS--------EYDPSPLIDIKDLNPGVSFGFQVIAGEGVGPGMWMYH 268 (299)
T ss_dssp TCEEEEEEEEESSCCCEEEETTCCEESSSSSSCCS--------TTCCCCEESEEECCTTCEEEEEEETTTTTCSEEEEEE
T ss_pred CCEEEEEEEeccccceeeeEecceEEEEecccccC--------CcCCCCceeeEEeCCceeEEEEEEEeeCCCCeeEEEE
Confidence 99999999999999999999999999988764322 2234568999999999876554 456899999999
Q ss_pred ecchhhhhcceEEEEEEeCCCc
Q 009054 498 SEFWARQYLGQQFYLRVYSPVE 519 (545)
Q Consensus 498 CHil~H~d~GMm~~~~V~~~~~ 519 (545)
|||++|++.|||..|+|.+.+.
T Consensus 269 CHi~~H~~~GM~~~f~V~~~~~ 290 (299)
T 3t9w_A 269 CHVQNHSDMGMAGMFLVRNADG 290 (299)
T ss_dssp ECSHHHHHTTCEEEEEEECTTS
T ss_pred cCCHHHHhcCCeEEEEEECCCC
Confidence 9999999999999999988764
No 44
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=99.90 E-value=4.6e-25 Score=221.82 Aligned_cols=232 Identities=14% Similarity=0.094 Sum_probs=139.6
Q ss_pred eEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccce----eeEEeEEEEccCceEEEEEEe
Q 009054 194 GILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTI----QTTYSSLDVHVGQSYSVLVTM 269 (545)
Q Consensus 194 ~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~----p~~~~~v~l~pgeR~dv~v~~ 269 (545)
..++||... |+|++++|+++|+||.|... ..+.+|.+|..+. .+.||.+.. +...+...|.||||++..+++
T Consensus 51 ~~~~n~~pG--P~I~v~~Gd~v~v~~~N~l~-~~~siH~HGl~~~-~~~dG~~~~dg~~~~~~~~~~I~PG~~~~Y~f~~ 126 (306)
T 1sdd_A 51 QSRTSGLLG--PTLYAEVGDIMKVHFKNKAH-KPLSIHAQGIKYS-KFSEGASYSDHTLPMEKMDDAVAPGQEYTYEWII 126 (306)
T ss_dssp CCSSCCSCC--CCEEEETTCEEEEEEEECSS-SCBCCEEESSCCC-TTTSCCCSCCCCCHHHHTTTCBCTTCEEEEEEEC
T ss_pred ccccCCccC--CEEEEeCCCEEEEEEEECCC-CcccEeecceecc-cccCCCccCCCCcccccCCCccCCCCeEEEEEEe
Confidence 346898776 99999999999999999875 5668888887743 367998752 222335678999999999999
Q ss_pred CCCC---------cceEEEEeeccc---CCccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCC
Q 009054 270 DQPP---------QDFYIAVSTRFT---NKVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTASGPRP 337 (545)
Q Consensus 270 ~~~~---------g~y~~~~~~~~~---~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p 337 (545)
++.+ |+||++++.... ...+.+ ++|....... ...+.+ +..+. ++...+..
T Consensus 127 ~~~~gp~~~d~~~GT~wYHsH~~~~~q~~~GL~G-~liV~~~~~~-~~~~~~--~~~d~--------e~~l~~~d----- 189 (306)
T 1sdd_A 127 SEHSGPTHDDPPCLTHIYYSYVNLVEDFNSGLIG-PLLICKKGTL-TEDGTQ--KMFEK--------QHVLMFAV----- 189 (306)
T ss_dssp CGGGSCCSSSCSEEEEEEECCSSSHHHHHTTCCE-EEEEECTTCB-CTTSSB--SSSCC--------CCCCBCCE-----
T ss_pred CCccCCCCCCCCceEEEEeccCCchhhhccCceE-EEEEccCCCC-CccCCc--Ccccc--------eEEEEEEe-----
Confidence 7543 699999984321 112333 3444332111 000000 00000 00000000
Q ss_pred CCCCCCCccccccceEEEeecccc-ccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEE
Q 009054 338 NPQGSYHYGLINISRTIKLESSAG-QVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVM 416 (545)
Q Consensus 338 ~p~~~~~~~~~~~~~~~~l~~~~~-~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 416 (545)
+..... .......|.|||+.|.. .| .+
T Consensus 190 ------------------~d~~~~~~~~~~~~~~ING~~~~~--~p--------------------------------~l 217 (306)
T 1sdd_A 190 ------------------FDESKSWNQTSSLMYTVNGYVNGT--MP--------------------------------DI 217 (306)
T ss_dssp ------------------EETTSSSSCCCCEEECSSSCCSSC--CC--------------------------------CC
T ss_pred ------------------cccccccccCCCcceeeCCEecCC--Cc--------------------------------ce
Confidence 000000 00112357899987521 11 14
Q ss_pred ecCCCcEEEEEEEcCCC--CCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 417 GADFRGFIEIVFQNHEN--IVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 417 ~~~~g~~v~~~i~N~~~--~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.++.|++++|.|.|.+. ..|||||||+.|++ .| .++||+.|.|++.+.|+|++++||.|
T Consensus 218 ~v~~G~~vrlrliN~g~~~~~h~~hlhG~~~~~----dG---------------~~~dtv~l~pger~~v~~~~~~pG~~ 278 (306)
T 1sdd_A 218 TVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQ----NH---------------HKISAITLVSATSTTANMTVSPEGRW 278 (306)
T ss_dssp CCCCC------BBCCCSSSCEECCBCSSTTCEE----TT---------------EECSCCCEETTCCBC--------CCC
T ss_pred EEcCCCEEEEEEEeCCCCCccEEEEECCcEeee----CC---------------EEcceEEECCCcEEEEEEEcCCCeEE
Confidence 57889999999999985 47999999999986 11 35899999999999999999999999
Q ss_pred eeeecchhhhhcceEEEEEEeCC
Q 009054 495 NVRSEFWARQYLGQQFYLRVYSP 517 (545)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V~~~ 517 (545)
+||||+++|++.|||..|.|.+.
T Consensus 279 ~~hch~~~H~~~GM~~~~~V~~~ 301 (306)
T 1sdd_A 279 TIASLIPRHFQAGMQAYIDIKNC 301 (306)
T ss_dssp CCBCCSTTTGGGTCBCCC-----
T ss_pred EEEeCChHHHhcCCeEEEEEecC
Confidence 99999999999999999999754
No 45
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=99.88 E-value=3.5e-22 Score=221.02 Aligned_cols=240 Identities=13% Similarity=0.134 Sum_probs=148.2
Q ss_pred CceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccce---e-eEEeEEEEccCceEEEEEEeCCC-----Cc
Q 009054 204 GASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTI---Q-TTYSSLDVHVGQSYSVLVTMDQP-----PQ 274 (545)
Q Consensus 204 ~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~---p-~~~~~v~l~pgeR~dv~v~~~~~-----~g 274 (545)
.|.|+++.|+++++||.|... ....+|.||.... .+.||.+.. | ..+....|.|||+++..+++++. +|
T Consensus 68 GP~I~~~~Gd~v~v~~~N~l~-~~~siH~HGl~~~-~~~DG~~~~~~~~~~~~~~~~I~PG~~~tY~f~~~~~~gp~~~G 145 (647)
T 1sdd_B 68 GPVIRAEVDDVIQVRFKNLAS-RPYSLHAHGLSYE-KSSEGKTYEDDSPEWFKEDNAIQPNKTYTYVWHATTRSGPENPG 145 (647)
T ss_dssp CCCEEEETTCEEEEEECCCSS-SCBCCEEETCC----------------------CCBCTTCCEECCEECCTTTSCCSSS
T ss_pred CceEEEeCCCEEEEEEEECCC-CceEEecCcceeC-CCCCCccccCCCCcccccCcccCCCCeEEEEEECCcccCCCCCC
Confidence 499999999999999999987 4568888887664 578998742 2 22345679999999999999864 57
Q ss_pred ----ceEEEEeeccc---CCccceEEEEEecCCCCCCCCCCCCCCCc--cccccccccc-ccccCCCCCCCCCCCCCCCC
Q 009054 275 ----DFYIAVSTRFT---NKVLTSTGTLHYSNSAHPVSGPVPGGPTT--QIDWSLNQAR-SIRTNLTASGPRPNPQGSYH 344 (545)
Q Consensus 275 ----~y~~~~~~~~~---~~~~~~~ail~y~~~~~~~~~~~p~~p~~--~~~~~~~~~~-~l~~~l~~~~~~p~p~~~~~ 344 (545)
+||+++|.... ...+.+.-|+.-.+... . .+..|.. +...-+.... ...+.+... ....+
T Consensus 146 ~~c~T~wYHsH~~~~~q~~~GL~G~lIV~~~~~~~-~---~~~~~~~~~e~~l~l~~~d~~~~w~~~~~-----~~~~~- 215 (647)
T 1sdd_B 146 SACRAWAYYSAVNPEKDIHSGLIGPLLICRKGTLD-K---ETNMPVDMREFVLLFMVFDEKKSWYYDKK-----PTRSW- 215 (647)
T ss_dssp CSEEEEEEECCSSHHHHHTTTCEEEEEEECTTSSC-T---TSCCCSSCCEEEEEEEEEEGGGSSCCC-------------
T ss_pred CCceEEEEccCCCCcccccccCccCEEEeeCCCcc-c---ccCCCCcceeEEEEEEeecCccccccccC-----ccccc-
Confidence 99999996421 12333333333322211 0 0111211 1110000000 001111100 00000
Q ss_pred ccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcEE
Q 009054 345 YGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFI 424 (545)
Q Consensus 345 ~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v 424 (545)
. ...... ......+.|||+.|. .| .+.++.|+++
T Consensus 216 ------~---~~~~~~--~~~~~~~~iNG~~~~---~p--------------------------------~l~v~~G~~v 249 (647)
T 1sdd_B 216 ------R---RASSEV--KNSHEFHAINGMIYN---LP--------------------------------GLRMYEQEWV 249 (647)
T ss_dssp -------------------CCCEEEEETTBSSC---CC--------------------------------CCEEETTCEE
T ss_pred ------c---cCCcch--hhcCceeccCCEecC---CC--------------------------------CeEEcCCCEE
Confidence 0 000000 012345789998751 11 2467889999
Q ss_pred EEEEEcCCC--CCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccceeeeecchh
Q 009054 425 EIVFQNHEN--IVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMWNVRSEFWA 502 (545)
Q Consensus 425 ~~~i~N~~~--~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~ 502 (545)
+|.|.|.+. +.||||+|||.|+|++.+ +.++||+.|.|++++.|+|++++||.|+||||+++
T Consensus 250 rlrliN~~~~~~~h~~hlhG~~f~vi~~d----------------~~~~d~v~l~pg~r~~v~~~~~~pG~w~~hch~~~ 313 (647)
T 1sdd_B 250 RLHLLNLGGSRDIHVVHFHGQTLLENGTQ----------------QHQLGVWPLLPGSFKTLEMKASKPGWWLLDTEVGE 313 (647)
T ss_dssp EEEEEECCCTTCCEEEEETTCCEEECSSS----------------CEEESSEEECTTEEEEEEEECCSSEEEEEECCCHH
T ss_pred EEEEEeCCCCCcceeEEEcCcEEEEecCC----------------CcccceEEECCCeEEEEEEEeccceEeecccCccc
Confidence 999999884 489999999999998652 45789999999999999999999999999999999
Q ss_pred hhhcceEEEEEEeCC
Q 009054 503 RQYLGQQFYLRVYSP 517 (545)
Q Consensus 503 H~d~GMm~~~~V~~~ 517 (545)
|++.|||..|.|.+.
T Consensus 314 h~~~Gm~~~~~V~~~ 328 (647)
T 1sdd_B 314 IQRAGMQTPFLIVDR 328 (647)
T ss_dssp HHTTTCEEEEEEECT
T ss_pred ccccccccceeeecc
Confidence 999999999999743
No 46
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=99.88 E-value=1.5e-21 Score=199.54 Aligned_cols=258 Identities=11% Similarity=0.093 Sum_probs=157.9
Q ss_pred CCeEEEcccCCCCceEEEeCCcEEEEEEEecCCC-CeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceEEEEEEeC
Q 009054 192 PDGILINGHGSNGASFTVEQGKTYRFRISNVGLQ-HSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMD 270 (545)
Q Consensus 192 ~~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~-~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~ 270 (545)
...+++||+.. .|.|++++|+++|+|+.|.... ..+.+++++... +.||..+. .|.|||++++.++++
T Consensus 59 ~~~~~~ng~~p-gP~i~v~~Gd~v~v~~~N~~~~~~~hg~~~~~~~~---~~~~~~~~-------~i~PG~~~~y~~~~~ 127 (340)
T 2bw4_A 59 IHAMTFNGSVP-GPLMVVHENDYVELRLINPDTNTLLHNIDFHAATG---ALGGGALT-------QVNPGEETTLRFKAT 127 (340)
T ss_dssp EEEEEETTBSS-CCEEEEETTCEEEEEEEECTTCCSCBCCEETTSCS---GGGGGGGC-------CBCTTEEEEEEEECC
T ss_pred EEEEEECCCCC-CCcEEEcCCCEEEEEEEeCCCCCccCcceeCCcCC---CCCCccce-------EeCCCCEEEEEEECC
Confidence 36899999963 4999999999999999999732 345667776542 23443221 389999999999998
Q ss_pred CCCcceEEEEeecc-----cCCccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCC-
Q 009054 271 QPPQDFYIAVSTRF-----TNKVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTASGPRPNPQGSYH- 344 (545)
Q Consensus 271 ~~~g~y~~~~~~~~-----~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~- 344 (545)
.+|+||++++... ....+.+. ++.......+...+.|.. .+.+..+ ...+ +.+.. .+.+.+.
T Consensus 128 -~~Gt~wyH~h~~~~~~~~~~~Gl~G~-~iV~~~~~~~~~~~~p~~--~d~e~~l-~l~D--~~~~~-----~~~g~~~~ 195 (340)
T 2bw4_A 128 -KPGVFVYHCAPEGMVPWHVTSGMNGA-IMVLPRDGLKDEKGQPLT--YDKIYYV-GEQD--FYVPK-----DEAGNYKK 195 (340)
T ss_dssp -SCEEEEEECCCTTCHHHHHHTTCEEE-EEEECTBCEECTTSCEEC--CSEEEEE-EEEE--ECCCB-----CTTSCBCC
T ss_pred -CCeEEEEEcCCCCchhhHHhCcCEEE-EEEccCcCcccccCCCcC--cceeEEE-eeee--eeecc-----ccCCcccc
Confidence 4999999999642 11123332 333322111000001110 1111000 0001 11100 0000000
Q ss_pred ccc--cccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCc
Q 009054 345 YGL--INISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRG 422 (545)
Q Consensus 345 ~~~--~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~ 422 (545)
+.. ...... +.... ......|.|||+.|... ....+.++.|+
T Consensus 196 ~~~~~~~~~~~--~~~~~--~~~~~~~~iNG~~~~~~--------------------------------~~~~l~v~~G~ 239 (340)
T 2bw4_A 196 YETPGEAYEDA--VKAMR--TLTPTHIVFNGAVGALT--------------------------------GDHALTAAVGE 239 (340)
T ss_dssp CCSHHHHHHHH--HHHHH--TTCCSEEEETTSTTTTS--------------------------------GGGCEEEETTC
T ss_pred cccccccccch--hhHhh--cCCCCEEEECCccCCcc--------------------------------CCCceEcCCCC
Confidence 000 000000 00000 01123588999875321 01236788899
Q ss_pred EEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCC-ccceEEeCCCCEEEEEEEeCCccceeeeecch
Q 009054 423 FIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAV-SRCTTQVYPKSWTAIYVALDNVGMWNVRSEFW 501 (545)
Q Consensus 423 ~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~-~rDTv~vp~~~~v~irf~adnpG~w~~HCHil 501 (545)
+++|++.|.+...|++|+|||.|+|++. |.+. ..|. ++||+.|.+++.+.|.|++++||.|+||||++
T Consensus 240 r~Rl~n~~~~~~~~~~~i~gh~~~Vi~d--G~~~---------~~p~~~~dtv~l~pGer~~v~v~~~~pG~y~~~~h~~ 308 (340)
T 2bw4_A 240 RVLVVHSQANRDTRPHLIGGHGDYVWAT--GKFR---------NPPDLDQETWLIPGGTAGAAFYTFRQPGVYAYVNHNL 308 (340)
T ss_dssp EEEEEEEESSSCBCEEEETCCEEEEETT--CCTT---------SCCEEEESCCCBCTTEEEEEEEECCSCEEEEEEESSH
T ss_pred EEEEEECCCCCccceEEecCcceEEeCC--Cccc---------CCccccceEEEeCCCceEEEEEECCCCeeeEEEcCch
Confidence 9999888887888999999999999963 2221 1122 47999999999999999999999999999999
Q ss_pred -hhhhcceEEEEEEeCCCc
Q 009054 502 -ARQYLGQQFYLRVYSPVE 519 (545)
Q Consensus 502 -~H~d~GMm~~~~V~~~~~ 519 (545)
+|++.|||..|+|.....
T Consensus 309 ~~h~~~Gm~~~~~V~~~~~ 327 (340)
T 2bw4_A 309 IEAFELGAAGHFKVTGEWN 327 (340)
T ss_dssp HHHHTTSCEEEEEEESCCC
T ss_pred HHHHhCCCEEEEEECCCCc
Confidence 699999999999986553
No 47
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=99.87 E-value=9.5e-22 Score=199.45 Aligned_cols=244 Identities=15% Similarity=0.096 Sum_probs=163.6
Q ss_pred CeEEEcccCCCCceEEEeCCcEEEEEEEecCCC-CeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceEEEEEEeCC
Q 009054 193 DGILINGHGSNGASFTVEQGKTYRFRISNVGLQ-HSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQ 271 (545)
Q Consensus 193 ~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~-~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 271 (545)
..+++||+.. .|.|+|++|+++|+|++|.... ..+.+|++|.. +.||.+. ...|.|||++++.++++
T Consensus 59 ~~~~~ng~~p-gP~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~----~~dG~~~------~~~i~PG~~~~y~f~~~- 126 (327)
T 1kbv_A 59 RYWTFDGDVP-GRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAAT----GQGGGAA------ATFTAPGRTSTFSFKAL- 126 (327)
T ss_dssp EEEEETTBSS-CCBEEEETTCEEEEEEEECTTCSSCBCCEETTCC----SGGGGTT------TTCBCTTEEEEEEEECC-
T ss_pred EEEEECCccC-CCeEEEeCCCEEEEEEEECCCCCCceeeEeCccc----cCCCCCc------ceeecCCCEEEEEEECC-
Confidence 5799999864 5999999999999999999863 46788888863 5788753 12489999999999998
Q ss_pred CCcceEEEEeeccc-C---CccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCccc
Q 009054 272 PPQDFYIAVSTRFT-N---KVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGL 347 (545)
Q Consensus 272 ~~g~y~~~~~~~~~-~---~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~ 347 (545)
.+|+||++|+.... . ..+.+ +++... .. .+|. .+....+ ...+ +....... .. +.
T Consensus 127 ~~Gt~wyH~h~~~~~~~~~~Gl~G-~~iV~~-~~-----~~p~---~d~e~~l-~~~d--~~~~~~~~---~~-----g~ 185 (327)
T 1kbv_A 127 QPGLYIYHCAVAPVGMHIANGMYG-LILVEP-KE-----GLPK---VDKEFYI-VQGD--FYTKGKKG---AQ-----GL 185 (327)
T ss_dssp SCEEEEEECCCSSHHHHHHTTCEE-EEEEEC-TT-----CCCC---CSEEEEE-EEEE--ECBSSCTT---CC-----EE
T ss_pred CCeEEEEEeCCCChhhhhhcceEE-EEEEec-CC-----CCCC---CceEEEE-Eeee--eeccCccc---cc-----cc
Confidence 48999999985321 1 12222 333332 21 1221 1111000 0000 11110000 00 00
Q ss_pred cccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcEEEEE
Q 009054 348 INISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFIEIV 427 (545)
Q Consensus 348 ~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~ 427 (545)
...+ +.... ......+.|||+.+... ....+.++.|++++|.
T Consensus 186 ~~~~----~~~~~--~~~~~~~~iNG~~~~~~--------------------------------~~~~l~v~~G~~vRlR 227 (327)
T 1kbv_A 186 QPFD----MDKAV--AEQPEYVVFNGHVGALT--------------------------------GDNALKAKAGETVRMY 227 (327)
T ss_dssp ECBC----HHHHH--HTCCSEEEETTSTTTTS--------------------------------GGGCEEEETTEEEEEE
T ss_pred cccC----hhHhc--cCCCceEEEcCcccCCC--------------------------------CceeEEeCCCCEEEEE
Confidence 0000 00000 01123578999764210 1134678899999999
Q ss_pred EEcCC-CCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccceeeeecchhhh-h
Q 009054 428 FQNHE-NIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMWNVRSEFWARQ-Y 505 (545)
Q Consensus 428 i~N~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~-d 505 (545)
|.|.+ ...|+||||||.|+|++..++.. .|.++||+.|.|++.+.|.|++++||.|++|||++.|. .
T Consensus 228 liN~~~~~~~~~~l~Gh~f~vi~~DG~~~-----------~p~~~d~l~l~pGer~dv~v~~~~pG~y~l~~h~~~~~~~ 296 (327)
T 1kbv_A 228 VGNGGPNLVSSFHVIGEIFDKVYVEGGKL-----------INENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFN 296 (327)
T ss_dssp EEEEESSCCEEEEEETCCBSEEEGGGSSC-----------EECSBSEEEECTTEEEEEEEEECSCEEEEEEESSTHHHHH
T ss_pred EECCCCCCceeEEEeCCEEEEEEcCCCcC-----------CCCceeEEEECCCCEEEEEEEeCCCeEEEEEecccccccc
Confidence 99987 57899999999999999875421 26789999999999999999999999999999999995 8
Q ss_pred cceEEEEEEeCCC
Q 009054 506 LGQQFYLRVYSPV 518 (545)
Q Consensus 506 ~GMm~~~~V~~~~ 518 (545)
.||++.++|....
T Consensus 297 ~g~~a~l~~~g~~ 309 (327)
T 1kbv_A 297 KGALGQLKVEGAE 309 (327)
T ss_dssp SSCEEEEEEESCC
T ss_pred CCcEEEEEECCCC
Confidence 8999999997654
No 48
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=99.85 E-value=3.3e-20 Score=188.92 Aligned_cols=258 Identities=10% Similarity=0.012 Sum_probs=151.1
Q ss_pred CeEEEcccCCCCceEEEeCCcEEEEEEEecCCCC-eeeEEEeCceeEEEeecCccceeeEEeEEEEccCceEEEEEEeCC
Q 009054 193 DGILINGHGSNGASFTVEQGKTYRFRISNVGLQH-SLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQ 271 (545)
Q Consensus 193 ~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~-~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 271 (545)
..+++||+.. .|.|++++|+++++|+.|.+.+. .+-++++++. ..||.. +.. .|.||+++++.++++
T Consensus 53 ~~~~~ng~~p-gP~i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~----~~~~~~--~~~----~i~PG~~~~y~f~~~- 120 (333)
T 1mzy_A 53 QAMTFDGSIP-GPLMIVHEGDYVELTLINPPENTMPHNIDFHAAT----GALGGG--GLT----LINPGEKVVLRFKAT- 120 (333)
T ss_dssp EEEEETTBSS-CCEEEEETTCEEEEEEEECTTCCSCBCCEETTSC----SGGGGG--GGC----CBCTTEEEEEEEECC-
T ss_pred EEEEECCccC-CCcEEecCCCEEEEEEEECCCCcccccceecCCC----CCCCCC--cee----EeCCCCEEEEEEECC-
Confidence 6889999973 49999999999999999996421 2344444431 122221 211 389999999999998
Q ss_pred CCcceEEEEeecc------cCCccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCC-
Q 009054 272 PPQDFYIAVSTRF------TNKVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTASGPRPNPQGSYH- 344 (545)
Q Consensus 272 ~~g~y~~~~~~~~------~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~- 344 (545)
.+|.||++|+... ....+.+.-++.-. ...+.....|. ..+.+..+ ...+ +.+... ..+.+.
T Consensus 121 ~~Gt~~yH~h~~~~~~~~~~~~Gl~G~~iV~~~-~~~~~~~~~p~--~~d~e~~l-~l~D--~~~~~~-----~~g~~~~ 189 (333)
T 1mzy_A 121 RAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPR-DGLKDHEGKPV--RYDTVYYI-GESD--HYIPKD-----EDGTYMR 189 (333)
T ss_dssp SCEEEEEECCCSTTHHHHHHHTTCEEEEEEECT-TCCBCTTSCBC--CCSEEEEE-EEEE--ECCCBC-----TTSCBCC
T ss_pred CCEEEEEeecCCcccchhhhhCCCEEEEEEccC-cCccccccCCC--ccchheee-eeee--eccCcc-----ccccccc
Confidence 5999999998642 11123333334321 11100000111 01111100 0011 111000 000000
Q ss_pred ccccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcEE
Q 009054 345 YGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFI 424 (545)
Q Consensus 345 ~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v 424 (545)
+........-.+.... ......|.|||+.+..+ +...+.++.|+++
T Consensus 190 ~~~~~~~~~~~~~~~~--~~~~~~~~ING~~~~~~--------------------------------~~~~l~v~~Ger~ 235 (333)
T 1mzy_A 190 FSDPSEGYEDMVAVMD--TLIPSHIVFNGAVGALT--------------------------------GEGALKAKVGDNV 235 (333)
T ss_dssp CSSHHHHHHHHHHHHT--TTCCSEEEETTSTTTTS--------------------------------GGGCEEEETTCEE
T ss_pred cccccccccchhHHhh--ccCCcEEEECCcccccC--------------------------------CCcceEecCCCEE
Confidence 0000000000000000 01123588999764211 1123678889999
Q ss_pred EEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCC-ccceEEeCCCCEEEEEEEeCCccceeeeecchhh
Q 009054 425 EIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAV-SRCTTQVYPKSWTAIYVALDNVGMWNVRSEFWAR 503 (545)
Q Consensus 425 ~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~-~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H 503 (545)
+|++.|.+...|++++|+|.|+|++ . |.+. ..|. ++||+.|.|++.+.|.|.+++||.|+||||+++|
T Consensus 236 Rl~n~~~~~~~~~h~i~~h~~~Vi~-d-G~~~---------~~p~~~~dtv~l~pGer~~v~v~a~~pG~y~~~ch~~~h 304 (333)
T 1mzy_A 236 LFVHSQPNRDSRPHLIGGHGDLVWE-T-GKFH---------NAPERDLETWFIRGGTAGAALYKFLQPGVYAYVNHNLIE 304 (333)
T ss_dssp EEEEEESSSCBCEEEETCCEEEEET-T-CCTT---------SCCEEEESBCCBCTTEEEEEEEECCSCEEEEEEESSHHH
T ss_pred EEEECCCCCccccEEECCCCeEEEe-C-Cccc---------CCCccCcceEEECCCceEEEEEEcCCCEEEEEecChhhh
Confidence 9887776655566668889999987 2 3221 1122 5899999999999999999999999999999999
Q ss_pred h-hcceEEEEEEeCCC
Q 009054 504 Q-YLGQQFYLRVYSPV 518 (545)
Q Consensus 504 ~-d~GMm~~~~V~~~~ 518 (545)
+ +.|||..|+|....
T Consensus 305 ~~~~Gm~~~~~v~~~~ 320 (333)
T 1mzy_A 305 AVHKGATAHVLVEGEW 320 (333)
T ss_dssp HHTTCCEEEEEEESCC
T ss_pred HhhCCCEEEEEEcCCC
Confidence 7 99999999998654
No 49
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=99.85 E-value=2.5e-22 Score=223.80 Aligned_cols=239 Identities=12% Similarity=0.079 Sum_probs=151.1
Q ss_pred CceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceEEEEEEeCC---------CCc
Q 009054 204 GASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQ---------PPQ 274 (545)
Q Consensus 204 ~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~---------~~g 274 (545)
.|.|+++.|++++++|.|... ....+|.+|..+....-||.+- + ...|.||++++..+++++ .+|
T Consensus 198 GP~Ir~~~GD~v~v~~~N~l~-~~~siH~HG~~~~~~~~dG~~~-~----~~~I~PG~~~tY~f~~~~~~gp~~~d~~~G 271 (770)
T 2r7e_B 198 GPYIRAEVEDNIMVTFRNQAS-RPYSFYSSLISYEEDQRQGAEP-R----KNFVKPNETKTYFWKVQHHMAPTKDEFDCK 271 (770)
T ss_dssp CCCCCCCSSSCEEEEEECCSS-SCCCCCBTTCCCCCCSSSCTTT-T----SSCCCSSCEEEEECCCCSSSSCCSSCCSEE
T ss_pred CCeEEEEcCCEEEEEEEECCC-CCcceeecccccccccCCCCcC-c----cCccCCCCeEEEEEEecCccCCccCCCCCe
Confidence 499999999999999999976 4568888887665444458752 1 235889999999999875 579
Q ss_pred ceEEEEeecccC---CccceEEEEEecCCCCCCCCCCCCCCCcccccccc--cccc-cccCCCCC--CCCCCCCCCCCcc
Q 009054 275 DFYIAVSTRFTN---KVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLN--QARS-IRTNLTAS--GPRPNPQGSYHYG 346 (545)
Q Consensus 275 ~y~~~~~~~~~~---~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~--~~~~-l~~~l~~~--~~~p~p~~~~~~~ 346 (545)
.||+++|..... ..+.+.-++. .......... .+..+..+.+- .... ..+.+... ...+.|.. +..
T Consensus 272 t~wYHsh~~~~~q~~~GL~G~liV~--~~~~~~~~~~--~~~~d~E~vl~~~~~de~~swy~~~~~~~~~~~p~~-~~~- 345 (770)
T 2r7e_B 272 AWAYSSDVDLEKDVHSGLIGPLLVC--HTNTLNPAHG--RQVTVQEFALFFTIFDETKSWYFTENMERNCRAPCN-IQM- 345 (770)
T ss_dssp EEEECCCSSSSHHHHTSCCEEEEEE--CSTTSCSSSC--CCCSSEEEECCCCEECCSSSSCTTGGGSSCSCCSSC-CCS-
T ss_pred eEEeeccCCcHHHHhCCceeeEEEC--CCcccccccC--CCccceEEEEEEeecCccccchhccchhhcccCccc-ccc-
Confidence 999999864321 1233322333 2211100000 01011110000 0000 00000000 00000000 000
Q ss_pred ccccceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcEEEE
Q 009054 347 LINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFIEI 426 (545)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~ 426 (545)
.+.. +. .....|+|||+.|.. ...+.++.|++|+|
T Consensus 346 ---~d~~--~~------~~~~~~~ING~~~~~----------------------------------~~~l~v~~Ge~vr~ 380 (770)
T 2r7e_B 346 ---EDPT--FK------ENYRFHAINGYIMDT----------------------------------LPGLVMAQDQRIRW 380 (770)
T ss_dssp ---SSSS--ST------TTSCEECTTSCTTTT----------------------------------CCCCCCCSSSCEEE
T ss_pred ---CCcc--cc------ccCCccccCCccCCC----------------------------------CCCeEEeCCCEEEE
Confidence 0000 00 112247788875421 11246789999999
Q ss_pred EEEcCCC--CCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccceeeeecchhhh
Q 009054 427 VFQNHEN--IVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMWNVRSEFWARQ 504 (545)
Q Consensus 427 ~i~N~~~--~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~ 504 (545)
.|.|.+. +.||||||||.|+|++.++ .++||+.|+|++++.|+|++|+||.|+||||+++|+
T Consensus 381 rliN~g~~~~~H~fHlhGh~f~Vv~~dg----------------~~~Dtv~l~Pg~~~~v~~~ad~pG~w~~hcH~~~H~ 444 (770)
T 2r7e_B 381 YLLSMGSNENIHSIHFSGHVFTVRKKEE----------------YKMALYNLYPGVFETVEMLPSKAGIWRVECLIGEHL 444 (770)
T ss_dssp ECCCCCSSSCCCEEEBSSCCEECCSSSC----------------CEESEEECCTTCCCEEEECCSSCBCCCBCCCSHHHH
T ss_pred EEEeCCCCcceEEEEEcCCEEEEEecCC----------------ceeeEEEECCCeEEEEEEEeCCCCceEEEecccccc
Confidence 9999874 4899999999999997642 279999999999999999999999999999999999
Q ss_pred hcceEEEEEEe
Q 009054 505 YLGQQFYLRVY 515 (545)
Q Consensus 505 d~GMm~~~~V~ 515 (545)
+.|||..|.|.
T Consensus 445 ~~GM~~~~~V~ 455 (770)
T 2r7e_B 445 HAGMSTLFLVY 455 (770)
T ss_dssp TTBCCCCCCBC
T ss_pred ccccccccccc
Confidence 99999999984
No 50
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=99.81 E-value=2.9e-19 Score=189.00 Aligned_cols=247 Identities=15% Similarity=0.097 Sum_probs=164.5
Q ss_pred CeEEEcccCCCCceEEEeCCcEEEEEEEecCCC-CeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceEEEEEEeCC
Q 009054 193 DGILINGHGSNGASFTVEQGKTYRFRISNVGLQ-HSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQ 271 (545)
Q Consensus 193 ~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~-~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 271 (545)
..+++||+.. .|.|+++.|++++|||.|.... ..+.+|+||+. ..||... ...|.||+++++.++++
T Consensus 49 ~~~~~ng~~p-gp~i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~----~~dG~~~------~~~i~pg~~~~y~f~~~- 116 (442)
T 2zoo_A 49 VFWSFGETVP-GSFIRVREGDEIEFNLSNHPSSKMPHNIDLHAVT----GPGGGAE------SSFTAPGHTSTFNFKAL- 116 (442)
T ss_dssp EEEEETTBSS-CCBEEEETTCEEEEEEEECTTCSSCBCCEETTCC----SGGGGGG------GCCBCTTCEEEEEEECC-
T ss_pred EEEEECCcCC-CCcEEEeCCCEEEEEEEECCCCCCCCCEEecCCc----CCCCCCc------cEEECCCCEEEEEEEcC-
Confidence 5799999973 5999999999999999999653 57789999975 4688643 22589999999999998
Q ss_pred CCcceEEEEeeccc-CC-ccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCccccc
Q 009054 272 PPQDFYIAVSTRFT-NK-VLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGLIN 349 (545)
Q Consensus 272 ~~g~y~~~~~~~~~-~~-~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~ 349 (545)
.+|.||++||.... .+ ...-.+.+.+.... .+|. .+.+..+. ..+ +.+......+ +
T Consensus 117 ~~Gt~~yH~H~~~~~~~~~~Gl~G~~iv~~~~-----~~~~---~d~e~~l~-l~d--~~~~~~~~~~--------~--- 174 (442)
T 2zoo_A 117 NPGLYIYHCATAPVGMHIANGMYGLILVEPKE-----GLAP---VDREYYLV-QGD--FYTKGEFGEA--------G--- 174 (442)
T ss_dssp SCEEEEEECCCSSHHHHHHTTCEEEEEEECTT-----CCCC---CSEEEEEE-EEE--ECBSSCTTCC--------E---
T ss_pred CCeEEEEecCCCChHHHHhCccEEEEEEeCCC-----CCCC---CCceEEEE-eee--eeccCccccc--------c---
Confidence 69999999974211 11 11123344443221 1111 11111000 001 1111000000 0
Q ss_pred cceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcEEEEEEE
Q 009054 350 ISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFIEIVFQ 429 (545)
Q Consensus 350 ~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~ 429 (545)
...+.+.... ......+.|||+.+... ....+.++.|++++|.|.
T Consensus 175 -~~~~~~~~~~--~~~~~~~liNG~~~~~~--------------------------------~~~~l~v~~G~~vrlrli 219 (442)
T 2zoo_A 175 -LQPFDMAKAI--DEDADYVVFNGSVGSTT--------------------------------DENSLTAKVGETVRLYIG 219 (442)
T ss_dssp -EECBCHHHHH--TTCCSEEEETTSTTTTS--------------------------------GGGCEEEETTCEEEEEEE
T ss_pred -cccCChhHhc--cCCCCEEEECCCcCCCC--------------------------------CCCceEeCCCCEEEEEEE
Confidence 0000000000 01123578999754210 012367888999999999
Q ss_pred cCC-CCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccceeeeecchhh-hhcc
Q 009054 430 NHE-NIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMWNVRSEFWAR-QYLG 507 (545)
Q Consensus 430 N~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H-~d~G 507 (545)
|.+ ...|+||+||+.|+|++..++.. .|.+.|++.|.|++...|.|++++||.|++|||.+.| .+.|
T Consensus 220 N~~~~~~~~~~i~g~~~~vi~~DG~~~-----------~p~~~~~~~l~pg~r~~v~v~~~~~G~y~~~~~~~~~~~~~g 288 (442)
T 2zoo_A 220 NGGPNLVSSFHVIGEIFDTVYVEGGSL-----------KNHNVQTTLIPAGGAAIVEFKVEVPGTFILVDHSIFRAFNKG 288 (442)
T ss_dssp EEESSCCEEEEEETCCBSEEEGGGSSC-----------EECSBSEEEECTTEEEEEEEECCSCEEEEEEESSTHHHHTTS
T ss_pred eCCCCCceeeEEcCCEEEEEecCCccC-----------CCccceEEEECCCeeEEEEEEcCCCCeEEEEecccccccccC
Confidence 976 57899999999999999865321 2567899999999999999999999999999999999 5999
Q ss_pred eEEEEEEeCCCc
Q 009054 508 QQFYLRVYSPVE 519 (545)
Q Consensus 508 Mm~~~~V~~~~~ 519 (545)
||..+.|...+.
T Consensus 289 ~~a~l~v~~~~~ 300 (442)
T 2zoo_A 289 ALAMLKVEGPDD 300 (442)
T ss_dssp CEEEEEEESCCC
T ss_pred ceEEEEecCCCC
Confidence 999999987664
No 51
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=99.80 E-value=2.6e-18 Score=175.06 Aligned_cols=257 Identities=13% Similarity=0.151 Sum_probs=155.9
Q ss_pred CeEEEcccCCCCceEEEeCCcEEEEEEEecCCC-CeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceEEEEEEeCC
Q 009054 193 DGILINGHGSNGASFTVEQGKTYRFRISNVGLQ-HSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQ 271 (545)
Q Consensus 193 ~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~-~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~ 271 (545)
..+++||+.. .|.|+++.|+++++|+.|.... ..+.++++++.. +.||..+. .|.||+++++.++++
T Consensus 54 ~~~~~ng~~p-gP~i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~~~---~~~~~~~~-------~i~pG~~~~y~f~~~- 121 (336)
T 1oe1_A 54 QAMTFNGSMP-GPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATG---ALGGAKLT-------NVNPGEQATLRFKAD- 121 (336)
T ss_dssp EEEEETTBSS-CCCEEEETTCEEEEEEEECTTCCSCBCCEETTSCS---GGGGGGGC-------CBCTTEEEEEEEECC-
T ss_pred EEEEECCccC-CCeEEEcCCCEEEEEEEcCCCCCccccceECCCCC---CCCCcceE-------EeCCCCEEEEEEECC-
Confidence 6899999863 5999999999999999998752 456788888753 22333221 389999999999998
Q ss_pred CCcceEEEEeeccc-----CCccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCC-c
Q 009054 272 PPQDFYIAVSTRFT-----NKVLTSTGTLHYSNSAHPVSGPVPGGPTTQIDWSLNQARSIRTNLTASGPRPNPQGSYH-Y 345 (545)
Q Consensus 272 ~~g~y~~~~~~~~~-----~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~-~ 345 (545)
.+|+||++++.... ...+.+.-+++-... .+ .+.+.....+....+ ...+ +.+... ..+.+. +
T Consensus 122 ~~Gt~~yH~h~~~~~~~~~~~Gl~G~liV~~~~~-~~--~~~~~~~~~D~e~~l-~~~D--~~~~~~-----~~g~~~~~ 190 (336)
T 1oe1_A 122 RSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDG-LK--DPQGKPLHYDRAYTI-GEFD--LYIPKG-----PDGKYKDY 190 (336)
T ss_dssp SCEEEEEECCCTTCHHHHHHTTCEEEEEEECTTC-CB--CTTSCBCCCSEEEEE-EEEE--ECCCBC-----TTSSBCCC
T ss_pred CCeEEEEecCCCCchhHHHhCCCeEEEEEecCcC-Cc--ccccCcccCCceeEe-eeee--eeeccc-----cCCceeec
Confidence 59999999995321 113333334442211 10 111110001111000 0001 111000 000000 0
Q ss_pred ccc-cc-ceEEEeeccccccCCeEEEEEcceeecCCCCchhhhcccccccccccCCCCCCCCCCCccccceEEecCCCcE
Q 009054 346 GLI-NI-SRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGF 423 (545)
Q Consensus 346 ~~~-~~-~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ 423 (545)
... .. ... +.. +. ......+.|||+.+... +...+.++.|++
T Consensus 191 ~~~~~~~~~~--~~~-~~-~~~~~~~liNG~~~~~~--------------------------------~~~~l~v~~Ger 234 (336)
T 1oe1_A 191 ATLAESYGDT--VQV-MR-TLTPSHIVFNGKVGALT--------------------------------GANALTAKVGET 234 (336)
T ss_dssp SSTGGGHHHH--HHH-HH-TTCCSEEEETTSTTTTS--------------------------------GGGCEEEETTCE
T ss_pred ccccccccch--hhH-hh-cCCCCEEEECCeeccCC--------------------------------CCcceEcCCCCE
Confidence 000 00 000 000 00 01123578888754211 123467889999
Q ss_pred EEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCC-CccceEEeCCCCEEEEEEEeCCccceeeeecchh
Q 009054 424 IEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDA-VSRCTTQVYPKSWTAIYVALDNVGMWNVRSEFWA 502 (545)
Q Consensus 424 v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p-~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~ 502 (545)
++|+..+.+...+++++|||.|.|+. .|.+. ..| .+.||+.|++++.+.+.+.+++||.|+||||.+.
T Consensus 235 vRlin~~~~~~~~~~~i~gh~~~Vi~--DG~~~---------~p~~~~~dtv~i~pGer~dvlv~~~~pG~y~~~~h~~~ 303 (336)
T 1oe1_A 235 VLLIHSQANRDTRPHLIGGHGDWVWE--TGKFA---------NPPQRDLETWFIRGGSAGAALYTFKQPGVYAYLNHNLI 303 (336)
T ss_dssp EEEEEEESSSCBCEEETTCCEEEEET--TCCTT---------SCCEEEESBCCBCTTEEEEEEEECCSCEEEEEEESSHH
T ss_pred EEEEecCCCCccceEEECCcCceEeC--CCcCc---------CCccccceEEEECCCCcEEEEEEcCCCceEEEEechhh
Confidence 99876666666677778999999996 33221 112 2469999999999999999999999999999998
Q ss_pred hh-hcceEEEEEEeCCCc
Q 009054 503 RQ-YLGQQFYLRVYSPVE 519 (545)
Q Consensus 503 H~-d~GMm~~~~V~~~~~ 519 (545)
|. +.||+..|+|.+...
T Consensus 304 ~~~~~G~~~~~~V~~~~~ 321 (336)
T 1oe1_A 304 EAFELGAAGHIKVEGKWN 321 (336)
T ss_dssp HHHTTSCEEEEEEESCCC
T ss_pred ccccCCCeEEEEECCCCC
Confidence 86 999999999986543
No 52
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=99.67 E-value=2.8e-15 Score=158.28 Aligned_cols=234 Identities=15% Similarity=0.133 Sum_probs=152.4
Q ss_pred eEEEEEEEEEEEecCCCe-----------eEEEEEEcCcccCceEEEecCCEEEEEEEeCCC-CCceEee-CCccCCCCC
Q 009054 30 YRFFTWNVTYGDIYPLGV-----------RQQGILINGQFPGPDIYSVTNDNLIINVHNSLP-EPFLISW-NGVQQRRNS 96 (545)
Q Consensus 30 ~~~~~l~~~~~~~~~dG~-----------~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~-~~~~iH~-HG~~~~~~~ 96 (545)
.+++.|.+++-....+|. ....+++||+ +.|+|+|++| ++++||.|... ...++|+ ||..+.. .
T Consensus 152 ~~e~~l~l~D~~~~~~~~~~~~~~~~~~~~~d~~liNG~-~~p~~~v~~g-~~RlRliNa~~~~~~~~~i~dg~~~~v-i 228 (451)
T 2uxt_A 152 VDDFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGV-QSPYVEVSRG-WVRLRLLNASNSRRYQLQMNDGRPLHV-I 228 (451)
T ss_dssp TTEEEEEEEEEEECTTSCEECCCCSSSCCCCSEEEETTE-ESCEEEECSS-EEEEEEEECCSSCCEEEEETTSCCEEE-E
T ss_pred CceEEEEEEeeecCCCCceecccccCCCCcCCEEEECCc-ccceEEecCC-EEEEEEEccCCceeEEEEECCCCeEEE-E
Confidence 457778887765544432 3468999998 4799999999 99999999984 4678999 8865542 4
Q ss_pred CCCCCCc-----c-CCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcCee------------eEEEEeCCCCCCCCCC
Q 009054 97 YEDGVYG-----T-TCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGF------------GGIRILSRPLIPVPFP 158 (545)
Q Consensus 97 ~~DGv~~-----~-q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~------------G~liV~~~~~~~~~~~ 158 (545)
..||.+. + +..|.|||++++.+++ ++.|+||++++........+. ..+-+....... +.
T Consensus 229 ~~DG~~~~~P~~~~~l~l~pgeR~dvlv~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~-~~- 305 (451)
T 2uxt_A 229 SGDQGFLPAPVSVKQLSLAPGERREILVDM-SNGDEVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLP-LV- 305 (451)
T ss_dssp ECSSSEEEEEEEESSEEECTTCEEEEEEEC-TTCCCEEEEC----------------CCCCSCCEEEEEEECSCCC----
T ss_pred EeCCCccCCceEeceEEECceeEEEEEEEe-CCCCEEEEEecCccccccccccccccCCCCCCcceEEEEecCCCc-Cc-
Confidence 6899642 3 6679999999999996 468999999987532211111 111111110000 00
Q ss_pred CCCCcceEEEeeeee-cchhhHHHhhccCCCCCCCCeEEEcccCCC--CceEEEeCCcEEEEEEEecCCCCeeeEEEeCc
Q 009054 159 EPAGDFTVLIGDWYK-ANHNKLKSVLDRGHRLPSPDGILINGHGSN--GASFTVEQGKTYRFRISNVGLQHSLNFRIQGH 235 (545)
Q Consensus 159 ~~~~e~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~liNG~~~~--~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh 235 (545)
..+.+..+..+.. .........+.-. ..++|||+.+. .+.+.++.|++++|+|+|. ..+.|||+||
T Consensus 306 --~~~~p~~L~~~~~~~~~~~~~~~~~l~------~~~~iNg~~f~~~~~~~~~~~G~~~~~~l~N~---~~HP~HLHGh 374 (451)
T 2uxt_A 306 --TDSLPMRLLPTEIMAGSPIRSRDISLG------DDPGINGQLWDVNRIDVTAQQGTWERWTVRAD---EPQAFHIEGV 374 (451)
T ss_dssp ----CCCSCSSSSCCCCCCCSEEEEEEEC------SSSSBTTBCCCTTCCCEEEETTCEEEEEEEEE---EEEEEEETTC
T ss_pred --cccCccccCCCCCCCCCCcceEEEEEe------eEEEECCEeCCCCCCcEEcCCCCEEEEEEECC---CCcCeEECCc
Confidence 0000000000000 0000000000000 04679999873 2468999999999999998 4789999999
Q ss_pred eeEEEeecCccc---eeeEEeEEEEccCceEEEEEEeCCCCcc----eEEEEeec
Q 009054 236 KMKLVEVEGTHT---IQTTYSSLDVHVGQSYSVLVTMDQPPQD----FYIAVSTR 283 (545)
Q Consensus 236 ~~~via~DG~~~---~p~~~~~v~l~pgeR~dv~v~~~~~~g~----y~~~~~~~ 283 (545)
.|+|++.||.+. +|...|++.+ |+++.+.++++ .+|. |.++||..
T Consensus 375 ~F~Vl~~~G~~~~~~~p~~rDTv~v--g~~~~i~~~~d-npg~~~g~w~~HCHil 426 (451)
T 2uxt_A 375 MFQIRNVNGAMPFPEDRGWKDTVWV--DGQVELLVYFG-QPSWAHFPFYFNSQTL 426 (451)
T ss_dssp EEEEEEETTBCCCGGGSSCBSEEEE--EEEEEEEEECC-SCCBTTBCEEEEESSH
T ss_pred eEEEEeeCCcCCCcccCCCccEEEE--CCEEEEEEEeC-CCCCCCCceEEeCCch
Confidence 999999999875 4788999999 99999999998 4565 99999965
No 53
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=99.66 E-value=3.2e-15 Score=157.59 Aligned_cols=235 Identities=13% Similarity=0.160 Sum_probs=161.9
Q ss_pred eEEEEEEEEEEEecC------------CCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCC-CCceEeeCCccCCCCC
Q 009054 30 YRFFTWNVTYGDIYP------------LGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLP-EPFLISWNGVQQRRNS 96 (545)
Q Consensus 30 ~~~~~l~~~~~~~~~------------dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~ 96 (545)
.+++.|.+++-.... .|.....+++||+. .|+|+|++| ++++|+.|... ....+|++|..... -
T Consensus 146 ~~e~~l~l~D~~~~~~~~~~~~~~~~~~g~~~~~~~iNG~~-~p~l~v~~g-~~RlRliN~~~~~~~~~~i~gh~~~v-i 222 (439)
T 2xu9_A 146 AEEHLLVLKDLALQGGRPAPHTPMDWMNGKEGDLVLVNGAL-RPTLVAQKA-TLRLRLLNASNARYYRLALQDHPLYL-I 222 (439)
T ss_dssp SEEEEEEEEEECEETTEECCCCHHHHHHCCCCSEEEETTEE-SCEEECSSS-EEEEEEEECCSSCCEEEEETTBCEEE-E
T ss_pred CCcEEEEEEeeeeCCCCcCCCCccccccCCCCCEEEECCcc-CCcEEecCC-eEEEEEEecCCCceEEEEECCceEEE-E
Confidence 467777776643321 13344688999996 799999999 99999999984 46789999976543 4
Q ss_pred CCCCCCc-----c-CCcCCCCCeEEEEEEeCCcceeeeeecCchhhhh---cCe--------------eeEEEEeCC-CC
Q 009054 97 YEDGVYG-----T-TCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKA---AGG--------------FGGIRILSR-PL 152 (545)
Q Consensus 97 ~~DGv~~-----~-q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~---~Gl--------------~G~liV~~~-~~ 152 (545)
..||.+. + ...|.|||+++..+++ +++|.||++|+....-. .|| ....+++-. ..
T Consensus 223 ~~DG~~~~~p~~~~~l~l~pgeR~dv~v~~-~~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 301 (439)
T 2xu9_A 223 AADGGFLEEPLEVSELLLAPGERAEVLVRL-RKEGRFLLQALPYDRGAMGMMDMGGMAHAMPQGPSRPETLLYLIAPKNP 301 (439)
T ss_dssp EETTEEEEEEEEESCEEECTTCEEEEEEEC-CSSEEEEEEEECCCCCCEEEECSSSCCEEEECCSCCCEEEEEEEECSSC
T ss_pred ecCCCCCCCceEeceEEECCceeEEEEEEc-CCCceEEEEecccccCCccccccccccccccCCCCCcceeEEEEecCCC
Confidence 6799753 2 4569999999999996 55999999998531100 122 122222211 11
Q ss_pred CCCCCCC---CCCcce--EEEeeeeecchhhHHHhhccCCCCCCCCeEEEcccCCCC--ceEEEeCCcEEEEEEEecCCC
Q 009054 153 IPVPFPE---PAGDFT--VLIGDWYKANHNKLKSVLDRGHRLPSPDGILINGHGSNG--ASFTVEQGKTYRFRISNVGLQ 225 (545)
Q Consensus 153 ~~~~~~~---~~~e~~--l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~--~~~~v~~G~~~rlRliNa~~~ 225 (545)
...+.+. ...++. -.-..+.+.... .+..++|||+.+.. +.+.++.|++++|+|.|.+.
T Consensus 302 ~~~~~p~~l~~~~~l~~~~~~r~~~l~~~~-------------~g~~~~iNg~~~~~~~~~~~~~~g~~~~~~~~N~~~- 367 (439)
T 2xu9_A 302 KPLPLPKALSPFPTLPAPVVTRRLVLTEDM-------------MAARFFINGQVFDHRRVDLKGQAQTVEVWEVENQGD- 367 (439)
T ss_dssp CCCCCCSCCCCCCCCCCCSEEEEEEEEEEG-------------GGTEEEETTBCCCTTCCCEEECTTCEEEEEEEECSS-
T ss_pred ccccCcccCCCcccCCCCCcceEEEEEeec-------------cCceEeECCEECCCCCCceecCCCCEEEEEEEcCCC-
Confidence 1111100 000000 000111111000 11378999999732 45899999999999999976
Q ss_pred CeeeEEEeCceeEEEeecCccc-eeeEEeEEEEccCceEEEEEEeCCCCcceEEEEeec
Q 009054 226 HSLNFRIQGHKMKLVEVEGTHT-IQTTYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTR 283 (545)
Q Consensus 226 ~~~~~~i~gh~~~via~DG~~~-~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~ 283 (545)
..+.||||||.|+|++.+|... .|...|++.+.||+++.+.++++ .||.|.++||..
T Consensus 368 ~~HP~HLHG~~F~Vl~~~g~~~~~p~~rDTv~v~p~~~v~i~f~ad-npG~w~~HCHil 425 (439)
T 2xu9_A 368 MDHPFHLHVHPFQVLSVGGRPFPYRAWKDVVNLKAGEVARLLVPLR-EKGRTVFHCHIV 425 (439)
T ss_dssp SCEEEEESSCCBEEEEETTEECSSCCCBSEEEECTTCEEEEEEECC-SCEEEEEEESSH
T ss_pred CCCCceeCCCcEEEEeeCCCCCCCCCCeEEEEeCCCCEEEEEEEcC-CCCCEEEECCcc
Confidence 4579999999999999999875 58889999999999999999977 799999999965
No 54
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=99.63 E-value=9.4e-17 Score=134.83 Aligned_cols=90 Identities=19% Similarity=0.267 Sum_probs=70.7
Q ss_pred CcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCC--CCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCc
Q 009054 56 GQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRN--SYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSV 133 (545)
Q Consensus 56 g~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~--~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~ 133 (545)
-+|++|+|++++||+|+ ++|..+..+++||||..+... ..+||.+..++.|.||++++|+|++++++|+||||||
T Consensus 14 ~~f~p~~i~v~~Gd~V~--~~N~~~~~H~v~~~~~~~~~~~g~~~~~~~~~~~~i~pG~~~~~~f~~~~~~G~y~y~C~- 90 (105)
T 3cvb_A 14 FQFEPANVTVHPGDTVK--WVNNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESYEITFSSDFPAGTYTYYCA- 90 (105)
T ss_dssp SCEESSEEEECTTEEEE--EEECSSCCEEEEECTTSSGGGCHHHHHHHCEEEEECSTTCEEEEEECTTSCSEEEEEECT-
T ss_pred cEEeCCEEEEcCCCEEE--EEECCCCCCeEEEeCCCCCcccccccccccccccccCCCCeEEEEEecCCCCeeEEEEeC-
Confidence 36789999999999975 679998999999999865320 0122222115689999999999985468999999999
Q ss_pred hhhhhcCeeeEEEEeC
Q 009054 134 GFQKAAGGFGGIRILS 149 (545)
Q Consensus 134 ~~~~~~Gl~G~liV~~ 149 (545)
.+..+||.|.|+|++
T Consensus 91 -~H~~~GM~G~i~V~~ 105 (105)
T 3cvb_A 91 -PHRGAGMVGKITVEG 105 (105)
T ss_dssp -TTGGGTCEEEEEECC
T ss_pred -CchhcCCEEEEEEcC
Confidence 456889999999974
No 55
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=99.60 E-value=2.8e-14 Score=152.78 Aligned_cols=248 Identities=13% Similarity=0.125 Sum_probs=161.2
Q ss_pred EEEEEEEEEEecCCCe-----eEEEEEEcCccc--------CceEEEecCCEEEEEEEeCCC-CCceEeeCCccCCCCCC
Q 009054 32 FFTWNVTYGDIYPLGV-----RQQGILINGQFP--------GPDIYSVTNDNLIINVHNSLP-EPFLISWNGVQQRRNSY 97 (545)
Q Consensus 32 ~~~l~~~~~~~~~dG~-----~~~~~~~ng~~p--------gP~i~v~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~ 97 (545)
++.|.+++-....++. ....+++||+.. .|+|+|++|+++++||.|... ....+|++|..+.. -.
T Consensus 143 e~~l~l~Dw~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~v~~g~~~RlRliN~~~~~~~~~~i~gh~~~v-i~ 221 (503)
T 1hfu_A 143 NTIITLADWYHIPAPSIQGAAQPDATLINGKGRYVGGPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTI-IE 221 (503)
T ss_dssp TSEEEEEEECSSCGGGCC---CCSEEEETTBCCBTTCCCCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEE-EE
T ss_pred eEEEEEcccccCChHHhcCCCCCCEEEECcccccCCCCCCcceEEEEcCCCEEEEEEEecCCcccEEEEEcCceEEE-Ee
Confidence 4556666544433332 235789999853 289999999999999999984 46789998876543 46
Q ss_pred CCCCCc----c-CCcCCCCCeEEEEEEeCCcceeeeeecCchh--h-----hhcCeeeEEEEeCCCCCCCCCCCCCCcce
Q 009054 98 EDGVYG----T-TCPIPPGKNFTYILQVKDQIGSYFYFPSVGF--Q-----KAAGGFGGIRILSRPLIPVPFPEPAGDFT 165 (545)
Q Consensus 98 ~DGv~~----~-q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~--~-----~~~Gl~G~liV~~~~~~~~~~~~~~~e~~ 165 (545)
.||.+. + ...|.|||+++..+++.+.+|.||.+++... + ...|+..+++.........|......+.
T Consensus 222 ~DG~~~~p~~~~~l~l~pgeR~dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~p~~~~~~~~- 300 (503)
T 1hfu_A 222 VDGELTEPHTVDRLQIFTGQRYSFVLDANQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAANADPTTSANPNP- 300 (503)
T ss_dssp ETTEEEEEEEESBEEECTTCEEEEEEECCSCSSEEEEEEEESSCGGGGGGCCGGGTTEEEEEETTSCSSCCCCCCCSSC-
T ss_pred ccCccccccccCeEEEcccceEEEEEEcCCCccceeeeeccccCCcccccccCCCceEEEEEECCCCCCCCCCCCCCcc-
Confidence 799742 2 4458999999999997555799999998541 1 2334434454443221111110000000
Q ss_pred EEEeeeeecch--hhH---------HHhhccCCCCCCCCeEEEcccCCCC-----------------------ceEEEeC
Q 009054 166 VLIGDWYKANH--NKL---------KSVLDRGHRLPSPDGILINGHGSNG-----------------------ASFTVEQ 211 (545)
Q Consensus 166 l~~~d~~~~~~--~~~---------~~~~~~~~~~~~~~~~liNG~~~~~-----------------------~~~~v~~ 211 (545)
..+.+..+... ... ...+..... .....++|||+.+.. ..+.++.
T Consensus 301 ~~l~~~~l~p~~~~~~p~~~~~~~~~~~~~l~~~-~~~~~~~iNg~~~~~~~~P~l~~~~~g~~~~~~~~~~~~~~~v~~ 379 (503)
T 1hfu_A 301 AQLNEADLHALIDPAAPGIPTPGAADVNLRFQLG-FSGGRFTINGTAYESPSVPTLLQIMSGAQSANDLLPAGSVYELPR 379 (503)
T ss_dssp CBCCGGGCBBSSSCSCSSCSSTTCSSEEEECCEE-EETTEEEETTBCCCCCSSCHHHHHHTTCCSGGGSSSTTSEEEECS
T ss_pred CCCccccccccCccCCCCcccCCcceEEEEEEee-ccCceEEECCCccCCCCCcchhhhhcCCcccccCCCCceEEEccC
Confidence 00000000000 000 000000000 011268899998721 3578999
Q ss_pred CcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccc----eeeEEeEEEE-ccCceEEEEEEeCCCCcceEEEEeec
Q 009054 212 GKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHT----IQTTYSSLDV-HVGQSYSVLVTMDQPPQDFYIAVSTR 283 (545)
Q Consensus 212 G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~----~p~~~~~v~l-~pgeR~dv~v~~~~~~g~y~~~~~~~ 283 (545)
|++++++++|......+.||||||.|+|++.+|... +|...|++.| .||+++.+.++++ .||.|.++||..
T Consensus 380 g~~vei~l~~n~~~~~HP~HLHGh~F~Vl~~~~~~~~n~~~p~~rDTV~V~ppg~~v~irf~ad-nPG~W~~HCHil 455 (503)
T 1hfu_A 380 NQVVELVVPAGVLGGPHPFHLHGHAFSVVRSAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVTD-NPGPWFFHCHIE 455 (503)
T ss_dssp SCEEEEEEECCSTTCCCEEEETTCCEEEEECTTCCCCCCSSBCEESEEECCSTTCEEEEEEECC-SCEEEEEEESSH
T ss_pred CCEEEEEEECCCCCCCCCEEEecceEEEEecCCCCccccCCCCeeeeEEecCCCceEEEEEEcC-CCeeeeEecCch
Confidence 999999999654456789999999999999999762 5889999999 7999999999998 799999999965
No 56
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=99.60 E-value=2.3e-14 Score=154.11 Aligned_cols=226 Identities=14% Similarity=0.187 Sum_probs=151.9
Q ss_pred EEEEEcCccc---------CceEEEecCCEEEEEEEeCCC-CCceEeeCCccCCCCCCCCCCCc----c-CCcCCCCCeE
Q 009054 50 QGILINGQFP---------GPDIYSVTNDNLIINVHNSLP-EPFLISWNGVQQRRNSYEDGVYG----T-TCPIPPGKNF 114 (545)
Q Consensus 50 ~~~~~ng~~p---------gP~i~v~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~~DGv~~----~-q~~i~pG~~~ 114 (545)
..+++||+.. -|+|+|++|+++++||.|... ....+|++|..+.. -..||.+. + ...|.|||++
T Consensus 192 d~~liNG~~~~~~~~~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~v-i~~DG~~~~p~~~~~l~l~pgqR~ 270 (521)
T 1v10_A 192 DTTLINGLGRNSANPSAGQLAVVSVQSGKRYRFRIVSTSCFPNYAFSIDGHRMTV-IEVDGVSHQPLTVDSLTIFAGQRY 270 (521)
T ss_dssp SEEEETTBCCCSSCGGGSCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEE-EEETTEEEEEEEESBEEECTTCEE
T ss_pred CEEEECCcccCCCCCCCCCceEEEECCCCEEEEEEEecCCcccEEEEECCCeEEE-EecCCccccceeeeeEEEcccceE
Confidence 4789999843 189999999999999999985 46789998876543 46799743 2 4569999999
Q ss_pred EEEEEeCCcceeeeeecCchh---hhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecch------h-----hHH
Q 009054 115 TYILQVKDQIGSYFYFPSVGF---QKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANH------N-----KLK 180 (545)
Q Consensus 115 ~y~~~~~~~~Gt~wYH~H~~~---~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~------~-----~~~ 180 (545)
+..+++++.+|.||.+++... ....|+..+++.........+..... +. ..+.+..+... . ...
T Consensus 271 dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~ail~y~~~~~~~p~~~~~-~~-~~~~~~~l~p~~~~~~p~~~~~~~~~ 348 (521)
T 1v10_A 271 SVVVEANQAVGNYWIRANPSNGRNGFTGGINSAIFRYQGAAVAEPTTSQN-SG-TALNEANLIPLINPGAPGNPVPGGAD 348 (521)
T ss_dssp EEEEECCSCSSEEEEEEEESSSSCSCGGGTTEEEEEETTCCSCCCCCCCC-CS-CBCCGGGCCBSSCCCCSSCSSTTCSS
T ss_pred EEEEEcCCCCCceeeeeccccccccCCCCceeEEEEECCCCCCCCCCCCC-cc-cccchhhcccCCcccCCCcccCCcce
Confidence 999997555799999998642 22334434555443221111110000 00 00000000000 0 000
Q ss_pred H--hhccCCCCCCCCeEEEcccCCC-----------------------CceEEEeCCcEEEEEEEecCCCCeeeEEEeCc
Q 009054 181 S--VLDRGHRLPSPDGILINGHGSN-----------------------GASFTVEQGKTYRFRISNVGLQHSLNFRIQGH 235 (545)
Q Consensus 181 ~--~~~~~~~~~~~~~~liNG~~~~-----------------------~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh 235 (545)
. .+..+. ......++|||+.+. .+.+.++.|++++++++| ...+.||||||
T Consensus 349 ~~~~l~~~~-~~~~~~~~iNg~~~~~~~~P~l~~~~~g~~~~~~~~~~~~~~~v~~g~~vei~l~N---~~~HP~HLHGh 424 (521)
T 1v10_A 349 INLNLRIGR-NATTADFTINGAPFIPPTVPVLLQILSGVTNPNDLLPGGAVISLPANQVIEISIPG---GGNHPFHLHGH 424 (521)
T ss_dssp EEEECCEEC-CSSSSCCEESSCCCCCCSSCHHHHHHHTCCCGGGSSSTTTEEEECTTCEEEEEEEC---CBSCEEEESSC
T ss_pred EEEEEEEec-CCceeEEEECCCcccCCCCchhhhhhcCCcccccCCCCceEEEecCCCEEEEEEcC---CCCCCEEEccc
Confidence 0 000000 001126789999872 135789999999999999 35689999999
Q ss_pred eeEEEeecCcc----ceeeEEeEEEE-ccCceEEEEEEeCCCCcceEEEEeec
Q 009054 236 KMKLVEVEGTH----TIQTTYSSLDV-HVGQSYSVLVTMDQPPQDFYIAVSTR 283 (545)
Q Consensus 236 ~~~via~DG~~----~~p~~~~~v~l-~pgeR~dv~v~~~~~~g~y~~~~~~~ 283 (545)
.|+|++.+|.. .+|...|++.+ .||+++.+.++++ .||.|.++||..
T Consensus 425 ~F~Vl~~~~~~~~n~~~p~~rDTV~V~p~gg~v~Irf~aD-NPG~W~~HCHi~ 476 (521)
T 1v10_A 425 NFDVVRTPGSSVYNYVNPVRRDVVSIGGGGDNVTFRFVTD-NPGPWFLHCHID 476 (521)
T ss_dssp CEEEEECTTCSCCCCSSCCEESEEECCBSSCEEEEEEECC-SCEEEEEEESCH
T ss_pred eEEEEecCCCCccccCCCCeeeeEEeCCCCcEEEEEEEeC-CCeeEEEeeChH
Confidence 99999999875 35889999999 7999999999998 799999999965
No 57
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=99.57 E-value=9.6e-15 Score=144.30 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=84.2
Q ss_pred EEEcCcc--cCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCC-------c-c-CCcCCCCCeEEEEEEe
Q 009054 52 ILINGQF--PGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVY-------G-T-TCPIPPGKNFTYILQV 120 (545)
Q Consensus 52 ~~~ng~~--pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~-------~-~-q~~i~pG~~~~y~~~~ 120 (545)
|+|||+. ++|.|++++||+|+++|.|.....+++||||..... ..+|.. . . ++.|.||++++|.|.+
T Consensus 157 ~~iNG~~~~~~p~i~v~~G~~vri~l~N~~~~~Hp~HlHG~~f~v--~~~G~~~~p~~~~~~~Dtv~v~pg~~~~~~~~~ 234 (276)
T 3kw8_A 157 MTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHRWAD--NRTGILTGPDDPSRVIDNKITGPADSFGFQIIA 234 (276)
T ss_dssp TEETTCCTTCCCCEEEETTCEEEEEEEEESSCCEEEEETTCCEES--SSSSSCCSTTCCCCEESEEEECTTCEEEEEEET
T ss_pred cccceecccCCCCEEEecCCEEEEEEecCCCcceeEEEccceeEE--eccCccCCCcccccCCccEEeCCCceEEEEEEe
Confidence 6999998 899999999999999999999999999999976543 234431 1 2 4569999999999995
Q ss_pred CC--cceeeeeecCchhhhhcCeeeEEEEeCCCC
Q 009054 121 KD--QIGSYFYFPSVGFQKAAGGFGGIRILSRPL 152 (545)
Q Consensus 121 ~~--~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~ 152 (545)
.+ .+|+||||||...+...||.|.|+|++++.
T Consensus 235 ~~~~npG~w~~HCH~~~H~~~GM~g~~~V~~~~~ 268 (276)
T 3kw8_A 235 GEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDG 268 (276)
T ss_dssp TTTTCSEEEEEEECSHHHHHTTCEEEEEEECTTS
T ss_pred ccCCCCCeEEEECCCchHhhCCCeEEEEEeCCCC
Confidence 32 599999999999999999999999998754
No 58
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=99.51 E-value=3.1e-13 Score=143.90 Aligned_cols=231 Identities=13% Similarity=0.149 Sum_probs=150.6
Q ss_pred EEEEEEcCcc---------cCceEEEecCCEEEEEEEeCC-CCCceEeeCCccCCCCCCCCCCCc----c-CCcCCCCCe
Q 009054 49 QQGILINGQF---------PGPDIYSVTNDNLIINVHNSL-PEPFLISWNGVQQRRNSYEDGVYG----T-TCPIPPGKN 113 (545)
Q Consensus 49 ~~~~~~ng~~---------pgP~i~v~~Gd~v~v~~~N~l-~~~~~iH~HG~~~~~~~~~DGv~~----~-q~~i~pG~~ 113 (545)
...+++||+- +-|.|+|++|+++++||.|.. .....+|++|..+.. -..||.+. + ...|.|||+
T Consensus 168 ~d~~liNG~g~~~~~~~~~~~~~~~v~~G~~~RlRliN~~~~~~~~~~i~gh~~~v-ia~DG~~~~P~~~~~l~i~pGqR 246 (495)
T 3t6v_A 168 ADSTLIDGLGRTHVNVAAVPLSVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTI-IETDGVDSQELTVDEIQIFAAQR 246 (495)
T ss_dssp CSEEEETTBCCBSSSCCCCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEE-EEETTEEEEEEEESBEEECTTCE
T ss_pred CcEEEECCcCcCCCCcccCCceEEEEcCCCEEEEEEEecCCCeeEEEEECCCeEEE-EEeCCcccCCEEeeeEEEcCceE
Confidence 4579999962 347899999999999999987 456788888876543 46799743 2 445999999
Q ss_pred EEEEEEeCCcceeeeeecCch---hhhhcCeeeEEEEeCCCCCCCCCCCCCC-cceEEEeeeeecchh-----------h
Q 009054 114 FTYILQVKDQIGSYFYFPSVG---FQKAAGGFGGIRILSRPLIPVPFPEPAG-DFTVLIGDWYKANHN-----------K 178 (545)
Q Consensus 114 ~~y~~~~~~~~Gt~wYH~H~~---~~~~~Gl~G~liV~~~~~~~~~~~~~~~-e~~l~~~d~~~~~~~-----------~ 178 (545)
++..+++.+..|.||.++... .....|...+++.........|...... ... .+.+..+..-. .
T Consensus 247 ~dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~ail~Y~~~~~~~p~~~~~~~~~~-~~~~~~L~p~~~~~~p~~~~~~~ 325 (495)
T 3t6v_A 247 YSFVLNANQPVGNYWIRANPNSGGEGFDGGINSAILRYDGATTADPVTVASTVHTK-CLIETDLHPLSRNGVPGNPHQGG 325 (495)
T ss_dssp EEEEEECCSCSSEEEEEEEESSSSCSCGGGTTEEEEEETTSCSSCCCCCCCSSCSS-BCCGGGCCBSSCCCCSSCSSTTC
T ss_pred EEEEEECCCCCceEEEEEecccCccccCCCceEEEEEECCCCCCCCCCCCCCCCcc-ccccccccccccccCCCccCCCC
Confidence 999999755579999998753 1122333334544432211111100000 000 00000000000 0
Q ss_pred HHHhhccCCCCCCCCeEEEcccCCC-----------------------CceEEEeCCcEEEEEEEecCCCCeeeEEEeCc
Q 009054 179 LKSVLDRGHRLPSPDGILINGHGSN-----------------------GASFTVEQGKTYRFRISNVGLQHSLNFRIQGH 235 (545)
Q Consensus 179 ~~~~~~~~~~~~~~~~~liNG~~~~-----------------------~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh 235 (545)
....+.-.. ...+..++|||+.+. ...+.++.|++++|.|.|......++||+|||
T Consensus 326 ~d~~~~l~~-~~~~~~w~iNg~s~~~~~~P~L~~~~~g~~~~~~~~~~~~v~~~~~g~~V~ivl~~n~~~~~HP~HLHGh 404 (495)
T 3t6v_A 326 ADCNLNLSL-GFACGNFVINGVSFTPPTVPVLLQICSGANTAADLLPSGSVISLPSNSTIEIALPAGAAGGPHPFHLHGH 404 (495)
T ss_dssp SSEEEECCE-EEETTEEEETTBCCCCCSSCHHHHHHTTCCSSTTSSSTTSEEEECTTCEEEEEEECCSSSCCCEEEETTC
T ss_pred CcEEEEEEE-EecCcEEEEcCEecCCCCCcchhhhhcCCcCcccccCCcceEEecCCCEEEEEEccCCCCCCcceeecCC
Confidence 000000000 001236889998762 12488999999999998434445789999999
Q ss_pred eeEEEeecCccc----eeeEEeEEEEcc-CceEEEEEEeCCCCcceEEEEeec
Q 009054 236 KMKLVEVEGTHT----IQTTYSSLDVHV-GQSYSVLVTMDQPPQDFYIAVSTR 283 (545)
Q Consensus 236 ~~~via~DG~~~----~p~~~~~v~l~p-geR~dv~v~~~~~~g~y~~~~~~~ 283 (545)
.|+|++.+|... .|...|++.+.+ |+.+.+.++++ .||.|.++||..
T Consensus 405 ~F~vl~~~g~~~~n~~~P~~rDtv~v~~~g~~~~irf~ad-nPG~W~~HCHi~ 456 (495)
T 3t6v_A 405 DFAVSESASNSTSNYDDPIWRDVVSIGGVGDNVTIRFCTD-NPGPWFLHCHID 456 (495)
T ss_dssp CEEEEECTTCCCCCSSSCCEESEEECCSTTCEEEEEEECC-SCEEEEEEESCH
T ss_pred cEEEEecCCCCCcccCCCCCccEEEcCCCCcEEEEEEEcC-CCeeEEEEecch
Confidence 999999988754 688999999997 99999999998 799999999954
No 59
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=99.48 E-value=1.3e-12 Score=138.26 Aligned_cols=239 Identities=14% Similarity=0.123 Sum_probs=157.3
Q ss_pred EEEEEEEEEEEecCCCe-------------eEEEEEEcCcccCceEEEecCCEEEEEEEeCC-CCCceEeeCCccCCCCC
Q 009054 31 RFFTWNVTYGDIYPLGV-------------RQQGILINGQFPGPDIYSVTNDNLIINVHNSL-PEPFLISWNGVQQRRNS 96 (545)
Q Consensus 31 ~~~~l~~~~~~~~~dG~-------------~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l-~~~~~iH~HG~~~~~~~ 96 (545)
.+| |.+++.....+|. ....+++||+. .|+|.|++|+ ++|+.|.. .....+|++|..... .
T Consensus 181 ~~~-l~l~D~~~~~~g~~~~~~~~~~~~g~~gd~~lvNG~~-~p~l~v~~g~--RlRliNa~~~~~~~l~i~g~~~~v-I 255 (481)
T 3zx1_A 181 EKD-LMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQF-KPKIKLATNE--RIRIYNATAARYLNLRIQGAKFIL-V 255 (481)
T ss_dssp EEE-EEEEEECCBTTSCCCCCCHHHHHHCCCCSEEEETTEE-SCEEEEETTE--EEEEEECCSSCCEEEEETTCEEEE-E
T ss_pred cee-EEEEEEeccCCCccccccchhhccCCcCCEEEECCcc-CceEEecCCC--EEEEEecCCCeEEEEEECCCceEE-E
Confidence 445 7777665554443 23578999995 6899999999 99999997 566789999876543 5
Q ss_pred CCCCCC----c-c-CCcCCCCCeEEEEEEeCCcceeeeeecCchhhh--------hcCeeeEEEEeCCCCCCCCC-----
Q 009054 97 YEDGVY----G-T-TCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQK--------AAGGFGGIRILSRPLIPVPF----- 157 (545)
Q Consensus 97 ~~DGv~----~-~-q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~--------~~Gl~G~liV~~~~~~~~~~----- 157 (545)
..||.. . + ...|.|||+++..+++ .+.|+|..-++..... ......-+-+... ....|.
T Consensus 256 a~DGg~~~~P~~~~~l~l~pgeR~dvlv~~-~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~lP~~l~~~ 333 (481)
T 3zx1_A 256 GTDGGLIEKTIYKEELFLSPASRVEVLIDA-PKDGNFKLESAYYDRDKMMVKEEPNTLFLANINLKKE-NVELPKNLKIF 333 (481)
T ss_dssp EETTEEEEEEEEESSEEECTTCEEEEEEEC-SSCEEEEEEECCCCCCCSSCCCCCCCEEEEEEEEECC-CCCCCSCSCCC
T ss_pred EcCCCccCCceEeCeEEECCccEEEEEEEc-CCCcEEEEEEecccccCccccCCCCceeEEEEecCCC-CccCCccccCC
Confidence 678742 2 2 4569999999999996 4578877766532210 0000111122211 111111
Q ss_pred ---CCCCCcceEEEeeeeecchhhHHHhhccCCCCC----CCCeEEEcccCCC--CceEEEeCCcEEEEEEEecCCCCee
Q 009054 158 ---PEPAGDFTVLIGDWYKANHNKLKSVLDRGHRLP----SPDGILINGHGSN--GASFTVEQGKTYRFRISNVGLQHSL 228 (545)
Q Consensus 158 ---~~~~~e~~l~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~liNG~~~~--~~~~~v~~G~~~rlRliNa~~~~~~ 228 (545)
+..+.+..+.++.... .... +....... ....++|||+.+. .+.++++.|++++|+|.|.+. ..+
T Consensus 334 ~~~~~~~~~r~~~l~~~~~----~~~~-~~~~~~~~~~~~~~~~~~iNG~~~~~~~~~~~~~~G~~v~w~l~N~~~-~~H 407 (481)
T 3zx1_A 334 KPSEEPKEFKEIIMSEDHM----QMHG-MMGKSEGELKIALASMFLINRKSYDLKRIDLSSKLGVVEDWIVINKSH-MDH 407 (481)
T ss_dssp CCCCCCCEEEEEEEEECCS----TTTT-GGGCCHHHHHHHHHTTEEETTBCCCTTCCCEEEETTCCEEEEEEECSS-SCE
T ss_pred CCCCCCCcEEEEEEeccch----hccc-ccccccccccccccceeEECCEeCCCCCceEEeCCCCEEEEEEEcCCC-Cce
Confidence 1111222232221110 0000 00000000 0125999999983 367999999999999999765 567
Q ss_pred eEEEeCceeEEEee--cCccce---eeEEeEEEEccCceEEEEEEeCCCCcceEEEEeec
Q 009054 229 NFRIQGHKMKLVEV--EGTHTI---QTTYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTR 283 (545)
Q Consensus 229 ~~~i~gh~~~via~--DG~~~~---p~~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~ 283 (545)
.|||+||.|+|++. ||.... +...|++.|.||+++.|.++++ .+|.|.++||..
T Consensus 408 p~HlHG~~F~vl~~~~~g~~~~~~~~~~kDTv~v~Pg~~~~i~~~~d-~pG~w~~HCHil 466 (481)
T 3zx1_A 408 PFHIHGTQFELISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQD-FKGLRMYHCHIL 466 (481)
T ss_dssp EEEETTCCEEEEEEEETTEEEECSSCCEESEEEECTTCEEEEEECCC-SCEEEEEEESSH
T ss_pred eEEEeccEEEEEEecccCCCCCcccCcccceEEECCCCEEEEEEEcC-CCeeEEEEcCCh
Confidence 99999999999999 998763 5689999999999999999997 799999999964
No 60
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=99.46 E-value=2.5e-12 Score=136.93 Aligned_cols=231 Identities=11% Similarity=0.147 Sum_probs=149.0
Q ss_pred EEEEEEcCcc--------cCceEEEecCCEEEEEEEeCCC-CCceEeeCCccCCCCCCCCCCCc----c-CCcCCCCCeE
Q 009054 49 QQGILINGQF--------PGPDIYSVTNDNLIINVHNSLP-EPFLISWNGVQQRRNSYEDGVYG----T-TCPIPPGKNF 114 (545)
Q Consensus 49 ~~~~~~ng~~--------pgP~i~v~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~~DGv~~----~-q~~i~pG~~~ 114 (545)
...+++||+- +-|.|+|++|+++++||.|... ....+|++|..+.. ...||.+. + ...|.|||++
T Consensus 166 ~d~~liNG~~~~~~~~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~P~~~~~l~i~pGqR~ 244 (499)
T 3pxl_A 166 ADATLINGKGRAPSDSVAELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTI-IEVDSVNSQPLEVDSIQIFAAQRY 244 (499)
T ss_dssp CSEEEETTBCCCTTCTTCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTBCEEE-EEETTEEEEEEEESBEEECTTCEE
T ss_pred CcEEEECCCCcCCCCCCCCcceEEEcCCCEEEEEEEecCCCeeEEEEECCCeEEE-EEECCcccCceEeeeEEECCCcEE
Confidence 4678999973 3479999999999999999874 56788999976543 46799743 2 3459999999
Q ss_pred EEEEEeCCcceeeeeecCch--h-hhhcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeeeecchh-----------hHH
Q 009054 115 TYILQVKDQIGSYFYFPSVG--F-QKAAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWYKANHN-----------KLK 180 (545)
Q Consensus 115 ~y~~~~~~~~Gt~wYH~H~~--~-~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~-----------~~~ 180 (545)
+..+++.+..|.||-.+... . ....|..-+++.........|......... .+.+..+..-. ...
T Consensus 245 dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~ail~Y~~~~~~~p~~~~~~~~~-~~~~~~L~p~~~~~~p~~~~~~~~d 323 (499)
T 3pxl_A 245 SFVLDANQAVDNYWIRANPNFGNVGFDGGINSAILRYDGAPAVEPTTNQTTSVK-PLNEVDLHPLVSTPVPGAPSSGGVD 323 (499)
T ss_dssp EEEEECCSCSSEEEEEEEESSSSCSCGGGTTEEEEEETTSCSSCCCCCCCCCSS-BCCGGGCCBSSCCCCSSCSSTTCSS
T ss_pred EEEEECCCCCceEEEEEecccCccccCCCceEEEEEeCCCCCCCCCCCCCCCCc-ccccccccccccccCCCcccCCCCc
Confidence 99999755579999988643 1 111222223444432211111100000000 00010000000 000
Q ss_pred HhhccCCCCCCCCeEEEcccCCC-----------------------CceEEEeCCcEEEEEEEecC--CCCeeeEEEeCc
Q 009054 181 SVLDRGHRLPSPDGILINGHGSN-----------------------GASFTVEQGKTYRFRISNVG--LQHSLNFRIQGH 235 (545)
Q Consensus 181 ~~~~~~~~~~~~~~~liNG~~~~-----------------------~~~~~v~~G~~~rlRliNa~--~~~~~~~~i~gh 235 (545)
..+.-.. ...+..++|||+.+. .+.+.++.|++++|.|.|.+ ....+.||+|||
T Consensus 324 ~~~~l~~-~~~~~~w~iNg~s~~~~~~P~L~~~~~g~~~~~~~~~~~~v~~~~~g~~V~ivl~~~~n~~~~~HP~HLHGh 402 (499)
T 3pxl_A 324 KAINMAF-NFNGSNFFINGASFVPPTVPVLLQILSGAQTAQDLLPSGSVYVLPSNASIEISFPATAAAPGAPHPFHLHGH 402 (499)
T ss_dssp EEEECCE-EECSSCEEETTBCCCCCSSCHHHHHHTTCCSTTTSSSTTSEEEECTTCEEEEEEECCTTSCSCSCEEEETTC
T ss_pred EEEEEEE-EecCcEEEEcCEecCCCCCchhhhhhcCCccccccCCCceeEEecCCCEEEEEEecCcccCCCCccceecCC
Confidence 0000000 001236889998762 13478999999999999532 234689999999
Q ss_pred eeEEEeecCccc----eeeEEeEEEEcc---CceEEEEEEeCCCCcceEEEEeec
Q 009054 236 KMKLVEVEGTHT----IQTTYSSLDVHV---GQSYSVLVTMDQPPQDFYIAVSTR 283 (545)
Q Consensus 236 ~~~via~DG~~~----~p~~~~~v~l~p---geR~dv~v~~~~~~g~y~~~~~~~ 283 (545)
.|+|++.+|... .|...|++.+.+ |+.+.+.++++ .||.|.++||..
T Consensus 403 ~F~Vl~~~g~~~~n~~~P~~rDtv~v~~~~pg~~~~irf~ad-nPG~W~~HCHi~ 456 (499)
T 3pxl_A 403 TFAVVRSAGSTVYNYDNPIFRDVVSTGTPAAGDNVTIRFDTN-NPGPWFLHCHID 456 (499)
T ss_dssp CEEEEECTTCCCCCSSSCCEESEEECCCGGGTCEEEEEEECC-SCEEEEEEESSH
T ss_pred cEEEEeccCCcccccCCCCccceEEcCCcCCCcEEEEEEEcC-CCceEEEEeCCh
Confidence 999999888653 688999999986 99999999998 799999999954
No 61
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=99.45 E-value=3.2e-12 Score=138.51 Aligned_cols=204 Identities=11% Similarity=0.144 Sum_probs=135.7
Q ss_pred eEEEecCCEEEEEEEeCCC-CCceEeeCCccCCCCCCCCCCCc----c-CCcCCCCCeEEEEEEe-CCcceeeeeecCch
Q 009054 62 DIYSVTNDNLIINVHNSLP-EPFLISWNGVQQRRNSYEDGVYG----T-TCPIPPGKNFTYILQV-KDQIGSYFYFPSVG 134 (545)
Q Consensus 62 ~i~v~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~~DGv~~----~-q~~i~pG~~~~y~~~~-~~~~Gt~wYH~H~~ 134 (545)
+|+|++|+++++||.|... ....+|++|..+.. -..||.+. + ...|.|||+++..+++ ++.+|.||-+++..
T Consensus 205 ~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~v-i~~DG~~~~P~~~~~l~i~pgqR~dvlv~~~~~~~g~y~i~~~~~ 283 (552)
T 1aoz_A 205 IFHVSPKKTYRIRIASTTALAALNFAIGNHQLLV-VEADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTR 283 (552)
T ss_dssp CEEECTTCEEEEEEEECCSSCEEEEEETTCCEEE-EEETTEEEEEEEESCEEECTTCEEEEEEECCSCTTCCEEEEEEEE
T ss_pred EEEEcCCCEEEEEEEcccccceEEEEEcCcEEEE-EEECCcccCceEEeEEEEcCCcEEEEEEEcCCCCCCCEEEEEEcc
Confidence 7999999999999999974 45678888875543 46799642 2 4569999999999997 34589999999865
Q ss_pred hhhhcCee--eEEEEeCCCC--CC---CC-CC--------------------------CCCCcceEEEeeeeecchhhHH
Q 009054 135 FQKAAGGF--GGIRILSRPL--IP---VP-FP--------------------------EPAGDFTVLIGDWYKANHNKLK 180 (545)
Q Consensus 135 ~~~~~Gl~--G~liV~~~~~--~~---~~-~~--------------------------~~~~e~~l~~~d~~~~~~~~~~ 180 (545)
.-...... +.|-...... .+ .+ .+ ..++.+.+.++.-.
T Consensus 284 ~~~~~~~~~~ail~y~~~~~~~~p~~~~p~~p~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~-------- 355 (552)
T 1aoz_A 284 ARHPNTPPGLTLLNYLPNSVSKLPTSPPPQTPAWDDFDRSKNFTYRITAAMGSPKPPVKFNRRIFLLNTQNV-------- 355 (552)
T ss_dssp SSCCCSCCEEEEEEETTSCTTSCCSSCCCCCCCTTCHHHHHHHHTTCCBCTTCCCCCSSCSEEEEEEEEEEE--------
T ss_pred cCCCCCccEEEEEEECCCCCCCCCCCCCCCCCccccccccccccccccccCCCCCCCCCCcEEEEEEEeecc--------
Confidence 21011122 2232222111 00 00 00 00111111110000
Q ss_pred HhhccCCCCCCCCeEEEcccCCC---------------------------------------------CceEEEeCCcEE
Q 009054 181 SVLDRGHRLPSPDGILINGHGSN---------------------------------------------GASFTVEQGKTY 215 (545)
Q Consensus 181 ~~~~~~~~~~~~~~~liNG~~~~---------------------------------------------~~~~~v~~G~~~ 215 (545)
......++|||+.+. ...+.++.|+++
T Consensus 356 --------~~~~~~w~iNg~s~~~p~~P~L~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~g~~v 427 (552)
T 1aoz_A 356 --------INGYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPEDYDIDTPPTNEKTRIGNGVYQFKIGEVV 427 (552)
T ss_dssp --------ETTEEEEEETTEEECCCSSCHHHHHHTTCTTSSCCSCCCSCCCTTCCTTSCCCCTTCEEECCCEEECTTCEE
T ss_pred --------CCCeEEEEECCCccCCCCCCHHHHHhhcCccccccCCCccccccccccccccccccccccceEEEecCCCEE
Confidence 000113455554320 134789999999
Q ss_pred EEEEEecCC-----CCeeeEEEeCceeEEEee-cCcc----------ceeeEEeEEEEccCceEEEEEEeCCCCcceEEE
Q 009054 216 RFRISNVGL-----QHSLNFRIQGHKMKLVEV-EGTH----------TIQTTYSSLDVHVGQSYSVLVTMDQPPQDFYIA 279 (545)
Q Consensus 216 rlRliNa~~-----~~~~~~~i~gh~~~via~-DG~~----------~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~~~ 279 (545)
+|.|.|.+. ...+.||||||.|+|++. +|.+ ..|...|++.+.||+.+.+.++++ .||.|.+|
T Consensus 428 ~ivi~N~~~~~~~~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~n~~~p~~RDTv~vpp~g~v~Irf~aD-NPG~W~~H 506 (552)
T 1aoz_A 428 DVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSAEEESSLNLKNPPLRNTVVIFPYGWTAIRFVAD-NPGVWAFH 506 (552)
T ss_dssp EEEEEECCCSSTTCCCCEEEEETTCCEEEEEEEESSCCGGGGGGSCCSSCCEESEEEECTTEEEEEEEECC-SCEEEEEE
T ss_pred EEEEeCCcccccccCCCCCEEEcCCceEEEecccCccCcccccccccCCCCccCeEEeCCCceEEEEEEcC-CCeEEEEE
Confidence 999999875 346899999999999998 4553 357889999999999999999998 79999999
Q ss_pred Eeec
Q 009054 280 VSTR 283 (545)
Q Consensus 280 ~~~~ 283 (545)
||..
T Consensus 507 CHi~ 510 (552)
T 1aoz_A 507 CHIE 510 (552)
T ss_dssp ESSH
T ss_pred eeeh
Confidence 9965
No 62
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=99.44 E-value=2.1e-12 Score=139.05 Aligned_cols=230 Identities=10% Similarity=0.145 Sum_probs=147.4
Q ss_pred EEEEEEcCcccCceEEEecCCEEEEEEEeCCC-CCceEeeCCccCCCCCCCCCCCc----c-CCcCCCCCeEEEEEEeCC
Q 009054 49 QQGILINGQFPGPDIYSVTNDNLIINVHNSLP-EPFLISWNGVQQRRNSYEDGVYG----T-TCPIPPGKNFTYILQVKD 122 (545)
Q Consensus 49 ~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~~DGv~~----~-q~~i~pG~~~~y~~~~~~ 122 (545)
...+++||+. .|+|+|++|+++++||.|... ....+|.+|..+.. ...||++. + ...|.|||+++..+++.+
T Consensus 167 ~d~~liNG~~-~~~~~v~~g~~~RlRliNa~~~~~~~~~i~gh~~~v-i~~DG~~~~P~~~~~l~l~~gqR~dvlv~~~~ 244 (534)
T 1zpu_A 167 PQNLIVNNTM-NLTWEVQPDTTYLLRIVNVGGFVSQYFWIEDHEMTV-VEIDGITTEKNVTDMLYITVAQRYTVLVHTKN 244 (534)
T ss_dssp CSEEEETTBS-SCEEECCSSCEEEEEEEECCSSCCEEEEETTBCEEE-EEETTEEEEEEEESCEEECTTCEEEEEEECCS
T ss_pred CceEEECCCC-ceEEEEECCCEEEEEEEeccCCceEEEEEcCCeeEE-EeccCcCccccEeceEEECccceEEEEEEcCC
Confidence 3578999985 699999999999999999984 46788888875543 46799743 2 456999999999999743
Q ss_pred c-ceeeeeecCchhhhh------cCeee-EEEEeCCCCCCCCCCCCCCcceEEEeeeeecc----------hhhHHHhhc
Q 009054 123 Q-IGSYFYFPSVGFQKA------AGGFG-GIRILSRPLIPVPFPEPAGDFTVLIGDWYKAN----------HNKLKSVLD 184 (545)
Q Consensus 123 ~-~Gt~wYH~H~~~~~~------~Gl~G-~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~----------~~~~~~~~~ 184 (545)
+ .|.||.......... ....+ +++..... ...+......++...+.|..+.. +..+.-.+.
T Consensus 245 ~~~~~y~i~~~~~~~~~~~~~~~~~~~~~ail~y~~~-~~~p~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~l~~~ 323 (534)
T 1zpu_A 245 DTDKNFAIMQKFDDTMLDVIPSDLQLNATSYMVYNKT-AALPTQNYVDSIDNFLDDFYLQPYEKEAIYGEPDHVITVDVV 323 (534)
T ss_dssp CSSCCEEEEEEECGGGSSSCCTTCCCEEEEEEESCTT-SCBCCCCCCSCSSCSCCGGGCCBSSCCCCCCSCSEEEEEEEE
T ss_pred CCCCcEEEEEeccccccccCCCCCCcceEEEEEeCCC-CCCCCCCcccccccccccccceeCCCCCCCCCCCeEEEEEEE
Confidence 3 578999886542210 01122 23322211 11010000000000000000000 000000000
Q ss_pred cCCCCCCCCeEEEcccCCC--------------------------CceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeE
Q 009054 185 RGHRLPSPDGILINGHGSN--------------------------GASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMK 238 (545)
Q Consensus 185 ~~~~~~~~~~~liNG~~~~--------------------------~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~ 238 (545)
..........++|||+.+. ...+.++.|++++|.|.|.+. ..+.||||||.|+
T Consensus 324 ~~~~~~~~~~~~iNg~s~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~ivi~N~~~-~~HP~HLHGh~F~ 402 (534)
T 1zpu_A 324 MDNLKNGVNYAFFNNITYTAPKVPTLMTVLSSGDQANNSEIYGSNTHTFILEKDEIVEIVLNNQDT-GTHPFHLHGHAFQ 402 (534)
T ss_dssp EEECTTSCEEEEETTBCCCCCSSCHHHHHTTSGGGTTCGGGGCSSSCEEEECTTCEEEEEEEECSS-SCEEEEETTCCEE
T ss_pred eeccCCceeEEEECCCcccCCCCCceeeecccCcccCCCcccCCCceEEEeCCCCEEEEEEeCCCC-CCCCeEecCCceE
Confidence 0000011236789998752 235889999999999999876 4679999999999
Q ss_pred EEeecCc--------------------cceeeEEeEEEEccCceEEEEEEeCCCCcceEEEEeec
Q 009054 239 LVEVEGT--------------------HTIQTTYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTR 283 (545)
Q Consensus 239 via~DG~--------------------~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~ 283 (545)
|++.++. ...|...|++.+.||+.+.+.++++ .||.|.+|||..
T Consensus 403 Vl~~~~~~~~~~~G~p~~~~~~~~~~~~~~p~~RDTv~V~pgg~v~IrF~aD-NPG~W~~HCHi~ 466 (534)
T 1zpu_A 403 TIQRDRTYDDALGEVPHSFDPDNHPAFPEYPMRRDTLYVRPQSNFVIRFKAD-NPGVWFFHCHIE 466 (534)
T ss_dssp EEEECCCCCGGGTCCCCCCBTTBCCCCCSSCEEESEEEECTTCEEEEEEECC-SCEEEEEEECCH
T ss_pred EEeecCCccccccCcccccCccccccccCCCCeeeEEEeCCCCEEEEEEEeC-CCeeEEEEeCch
Confidence 9998853 1247789999999999999999998 799999999965
No 63
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=99.44 E-value=6.8e-13 Score=112.50 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=79.4
Q ss_pred EEEEEEEEEEEe-----cCCCeeEEE-EEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCcc
Q 009054 31 RFFTWNVTYGDI-----YPLGVRQQG-ILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGT 104 (545)
Q Consensus 31 ~~~~l~~~~~~~-----~~dG~~~~~-~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~ 104 (545)
++|.+.+.+... ..+|..... ..||++|+++.|++++||+|+++++|.... +||+.... .| +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~f~p~~i~v~~G~~V~~~~~n~d~~-----~H~~~i~~----~~---~ 69 (112)
T 1iby_A 2 HNFNVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPETLVVKKGDAVKVVVENKSPI-----SEGFSIDA----FG---V 69 (112)
T ss_dssp CCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESCEEEEETTCEEEEEEEECSSS-----CEEEEEGG----GT---E
T ss_pred CceeEEEEeccCccccEEeccEEEEEEEEEeeEEcCCEEEEeCCCEEEEEEEECCCC-----eEEEEEcC----CC---c
Confidence 345565555443 345666555 599999999999999999999999999865 55554321 12 2
Q ss_pred CCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhcCeeeEEEEeC
Q 009054 105 TCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAAGGFGGIRILS 149 (545)
Q Consensus 105 q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~ 149 (545)
+..+.||++++|.|+ ++++|+||||||.+..... |.|.|+|.+
T Consensus 70 ~~~i~pG~~~~~~f~-~~~~G~y~~~C~~~~~~~~-M~g~i~V~~ 112 (112)
T 1iby_A 70 QEVIKAGETKTISFT-ADKAGAFTIWCQLHPKNIH-LPGTLNVVE 112 (112)
T ss_dssp EEEECTTCEEEEEEE-CCSCEEEEEBCSSSCTTTB-CCEEEEEEC
T ss_pred eeEeCCCCEEEEEEE-CCCCEEEEEECCCCCchHH-CEEEEEEeC
Confidence 467999999999999 4789999999998755433 999999974
No 64
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.44 E-value=3.7e-13 Score=120.46 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=68.9
Q ss_pred EEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCC------CCCcc--CCcCCCCC--eEEEEEEe
Q 009054 51 GILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYED------GVYGT--TCPIPPGK--NFTYILQV 120 (545)
Q Consensus 51 ~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~D------Gv~~~--q~~i~pG~--~~~y~~~~ 120 (545)
.+..+|. ++|+|+|++||+|+|+++|... ...|.+.+...++...+ ...+. ...|.||+ +++|.|+
T Consensus 52 ~~~~~g~-~~p~i~V~~GD~V~~~~tN~~~--~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft- 127 (154)
T 2cal_A 52 SFEVHDK-KNPTLEIPAGATVDVTFINTNK--GFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWH- 127 (154)
T ss_dssp CEEETTE-ESCEEEECTTCEEEEEEEECCT--TCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEEC-
T ss_pred cccccCC-CCCEEEEeCCCEEEEEEEcCCC--CeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEE-
Confidence 3344554 6799999999999999999732 34666666544333322 11111 12789999 9999999
Q ss_pred CCcceeeeeecCchhhhhcCeeeEEEEe
Q 009054 121 KDQIGSYFYFPSVGFQKAAGGFGGIRIL 148 (545)
Q Consensus 121 ~~~~Gt~wYH~H~~~~~~~Gl~G~liV~ 148 (545)
. ++||||||||...|..+||+|.|+|+
T Consensus 128 ~-~pGtY~y~C~~~gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 128 P-TAGTYYYVCQIPGMAATGMFGKIVVK 154 (154)
T ss_dssp C-CSEEEEEECCSTTTGGGTCEEEEEEC
T ss_pred E-CCceEEEECCCCCHHHCCCEEEEEEC
Confidence 4 89999999999889999999999985
No 65
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=99.42 E-value=5.1e-12 Score=136.87 Aligned_cols=233 Identities=10% Similarity=0.061 Sum_probs=146.4
Q ss_pred EEEEEEcCccc--------CceEEEecCCEEEEEEEeCCC-CCceEeeCCccCCCCCCCCCCCc----c-CCcCCCCCeE
Q 009054 49 QQGILINGQFP--------GPDIYSVTNDNLIINVHNSLP-EPFLISWNGVQQRRNSYEDGVYG----T-TCPIPPGKNF 114 (545)
Q Consensus 49 ~~~~~~ng~~p--------gP~i~v~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~~DGv~~----~-q~~i~pG~~~ 114 (545)
...+++||+.. -|+|+|++|+++++||.|... ....+|++|..+.. -..||.+. + ...|.|||++
T Consensus 195 ~d~~liNG~~~~~~~~~g~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~gh~~~v-i~~DG~~~~p~~~~~l~l~pgeR~ 273 (559)
T 2q9o_A 195 SDNVLINGTAVNPNTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTV-IAADMVPVNAMTVDSLFLAVGQRY 273 (559)
T ss_dssp BSEEEETTBCBCTTTCCBCCCEEEECTTCEEEEEEEECCSSCCEEEEETTBCEEE-EEETTEEEEEEEESCEEECTTCEE
T ss_pred cceeEECCccccCcCCCCCceEEEEcCCCEEEEEEEecCCCceEEEEECCCceEE-EecCCcccCceEeCeEEEccEEEE
Confidence 34789999863 378999999999999999985 45689999876543 46799753 2 4569999999
Q ss_pred EEEEEeCCcceeeeeecCc--hhh---hhcCeeeEEEEeCCCCCCCCCCC----CC----CcceE-EEeeeeecch---h
Q 009054 115 TYILQVKDQIGSYFYFPSV--GFQ---KAAGGFGGIRILSRPLIPVPFPE----PA----GDFTV-LIGDWYKANH---N 177 (545)
Q Consensus 115 ~y~~~~~~~~Gt~wYH~H~--~~~---~~~Gl~G~liV~~~~~~~~~~~~----~~----~e~~l-~~~d~~~~~~---~ 177 (545)
+..+++++.+|.||..... ... .......+++.........|... .+ .+..+ -+........ .
T Consensus 274 dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~~~ail~y~~~~~~~P~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~ 353 (559)
T 2q9o_A 274 DVVIDASRAPDNYWFNVTFGGQAACGGSLNPHPAAIFHYAGAPGGLPTDEGTPPVDHQCLDTLDVRPVVPRSVPVNSFVK 353 (559)
T ss_dssp EEEEECCSCSSEEEEEEECCGGGTTCCBSSSCCEEEEEETTSCCSCCCCCCCCCCCCTTCCCSCCCBSSCCBCCCTTCCC
T ss_pred EEEEECCCCCCcEEEEEEeccccccCCCCCCceeEEEEECCCCCCCCCCCCCcCCCcccccccccccCCCCCCCCccccc
Confidence 9999975558999988875 211 11111122332221111111100 00 00000 0000000000 0
Q ss_pred --hHHHhhccCCCCCCCCeEEEcccCCC----Cc-----------------eEEEeCCcEEEEEEEecCC----CCeeeE
Q 009054 178 --KLKSVLDRGHRLPSPDGILINGHGSN----GA-----------------SFTVEQGKTYRFRISNVGL----QHSLNF 230 (545)
Q Consensus 178 --~~~~~~~~~~~~~~~~~~liNG~~~~----~~-----------------~~~v~~G~~~rlRliNa~~----~~~~~~ 230 (545)
...-.+...........++|||+.+. .| .+.++.++.+++.++|... ...|+|
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~iNg~s~~~~~~~P~L~~~~~g~~~~~~~~~~~~~~~~~~v~~~vi~n~~~~~~~~~HP~ 433 (559)
T 2q9o_A 354 RPDNTLPVALDLTGTPLFVWKVNGSDINVDWGKPIIDYILTGNTSYPVSDNIVQVDAVDQWTYWLIENDPEGPFSLPHPM 433 (559)
T ss_dssp CGGGEEEEEEECSSSSSCEEEETTBCCCCCTTSCHHHHHHHTCCCCCGGGCEEEECCSSCEEEEEEEECTTSSCCCCEEE
T ss_pred ceeEEEEEEeecCCCceEEEEECCEecccCCCCCcHhHhhcCCccCCCCceEEEcCCCCEEEEEEEeCCCccccCCCCcE
Confidence 00000000000112347899999862 12 3677777777776776644 567899
Q ss_pred EEeCceeEEEeecC---------cc------------ceeeEEeEEEEccCceEEEEEEeCCCCcceEEEEeec
Q 009054 231 RIQGHKMKLVEVEG---------TH------------TIQTTYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTR 283 (545)
Q Consensus 231 ~i~gh~~~via~DG---------~~------------~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~ 283 (545)
|||||.|+|++.++ .. ..|...|++.|.+|+.+.+.++++ .||.|.+|||..
T Consensus 434 HLHGh~F~Vl~~g~~~~~~~~~~g~~~~~~~~~~~n~~~p~~RDTV~Vp~~g~v~IrF~ad-NPG~W~~HCHil 506 (559)
T 2q9o_A 434 HLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLAFRTD-NPGAWLFHCHIA 506 (559)
T ss_dssp EESSSCEEEEEESCCCCTTSCCCCCCCHHHHGGGCCCBSCCEESEEEECTTSEEEEEEECC-SCEEEEEEECCH
T ss_pred EECCCceEEEecccccccccccccccCccccccccccCCCCccceEEccCCccEEEEEEcC-CCeeEEEEecch
Confidence 99999999999987 22 146789999999999999999988 799999999965
No 66
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=99.39 E-value=1.3e-12 Score=132.86 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=82.9
Q ss_pred EEEcCcc--cCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCC-------c-c-CCcCCCCCeEEEEEEe
Q 009054 52 ILINGQF--PGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVY-------G-T-TCPIPPGKNFTYILQV 120 (545)
Q Consensus 52 ~~~ng~~--pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~-------~-~-q~~i~pG~~~~y~~~~ 120 (545)
|+|||+. ..|.|++++||+|+|+|.|.....+.+|+||...... .+|.. . . ...|.||++++|.|++
T Consensus 198 ~~iNG~~~~~~~~l~v~~Ge~vri~l~N~g~~~HpfHlHGh~f~v~--~~G~~~~p~~~~~~~Dtv~v~PG~~~~v~~~~ 275 (343)
T 3cg8_A 198 MTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHRWADN--RTGILTGPDDPSRVIDNKITGPADSFGFQIIA 275 (343)
T ss_dssp TEETTCCTTCCCCEEEETTCEEEEEEEEESSCCEEEEETTCCEESS--SSSSCCSTTCCCCEESEEEECTTCEEEEEEET
T ss_pred ceecccCCCCCccEEeCCCCEEEEEEEcCCccccccEecCcEEEEe--ccCcccCCCCcccceeeEEeCCCCEEEEEEEE
Confidence 6899986 4789999999999999999999999999999764321 23321 1 1 3469999999999996
Q ss_pred --CCcceeeeeecCchhhhhcCeeeEEEEeCCCCC
Q 009054 121 --KDQIGSYFYFPSVGFQKAAGGFGGIRILSRPLI 153 (545)
Q Consensus 121 --~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~ 153 (545)
++.+|+|+||||...+...||.|.++|.+++..
T Consensus 276 ~~~~~pG~w~~HCHi~~H~~~GM~g~~~V~~~~~~ 310 (343)
T 3cg8_A 276 GEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGT 310 (343)
T ss_dssp TTTTCSEEEEEEECSHHHHHTTCEEEEEEECTTSC
T ss_pred CCCCCCeeEEEeCCCHHHHhccCcEEEEEecCCCC
Confidence 367999999999999999999999999986543
No 67
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...
Probab=99.38 E-value=7.7e-12 Score=132.33 Aligned_cols=247 Identities=17% Similarity=0.166 Sum_probs=154.5
Q ss_pred EEEEEEEEEEEecCCCe--------------eEEEEEEcCcccCceEEEecCCEEEEEEEeCCC-CCceEee-CCccCCC
Q 009054 31 RFFTWNVTYGDIYPLGV--------------RQQGILINGQFPGPDIYSVTNDNLIINVHNSLP-EPFLISW-NGVQQRR 94 (545)
Q Consensus 31 ~~~~l~~~~~~~~~dG~--------------~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~-~~~~iH~-HG~~~~~ 94 (545)
.++.|.+++-....+|. ....+++||+. .|.+.+ +|+++++||.|... ....+++ +|.....
T Consensus 151 ~d~~lvl~D~~~~~~g~~~~~~~~~~~~~g~~gd~~lvNG~~-~p~~~v-~g~~~RlRliNas~~~~~~l~i~dg~~~~v 228 (488)
T 3od3_A 151 DDVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAI-YPQHAA-PRGWLRLRLLNGCNARSLNFATSDNRPLYV 228 (488)
T ss_dssp TEEEEEEEEECBCTTSSBCCCCSHHHHHHCCCCSEEEETTBS-SCEEEE-EEEEEEEEEEECCSSCCEEEEETTCCCEEE
T ss_pred cceeEEEEEeeecCCCceeccccccccccCCCCCEEEEcCCc-CccEec-CCCEEEEEEEccCCCceeeeeecCCCeEEE
Confidence 46677777665544432 23578999985 588876 67899999999974 4567777 6754332
Q ss_pred CCCCCCCC----c-c-CCcCCCCCeEEEEEEeCCcceeeeeecCchhhhh------cCeeeEEEEeCC---CCCCCCC--
Q 009054 95 NSYEDGVY----G-T-TCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKA------AGGFGGIRILSR---PLIPVPF-- 157 (545)
Q Consensus 95 ~~~~DGv~----~-~-q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~------~Gl~G~liV~~~---~~~~~~~-- 157 (545)
...||.+ . + ...|.|||+++..++++ +.++|+.-+....... +.-.-.+-|.+. +....|.
T Consensus 229 -Ia~DG~~l~~P~~~~~l~l~pGeR~dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~L 306 (488)
T 3od3_A 229 -IASDGGLLPEPVKVSELPVLMGERFEVLVEVN-DNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAISASGALPDTL 306 (488)
T ss_dssp -EEETTEEEEEEEEESCEEECTTCEEEEEEEEC-TTCCEEEEECCCSSTTTTSTTTTSCEEEEEEEEEEEECCCCCCSCC
T ss_pred -EEeCCCcccCccEeceEEECCCCEEEEEEEeC-CCceEEEEEeccCCCCcccccccCccceeEecccccCCCCCCCccc
Confidence 4689953 2 2 45699999999999974 5777776554321100 000012222220 1111111
Q ss_pred ---CC-C------CCcceEEEeeeeecchh--hHHH-h----hc------------cCCCC--------CCCCeEEEccc
Q 009054 158 ---PE-P------AGDFTVLIGDWYKANHN--KLKS-V----LD------------RGHRL--------PSPDGILINGH 200 (545)
Q Consensus 158 ---~~-~------~~e~~l~~~d~~~~~~~--~~~~-~----~~------------~~~~~--------~~~~~~liNG~ 200 (545)
+. . .+++.+.+... .+..+ .+.+ + +. .|... .....++|||+
T Consensus 307 ~~~~~~~~~~~~~~r~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ING~ 385 (488)
T 3od3_A 307 SSLPALPSLEGLTVRKLQLSMDPM-LDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGNMNHMNHGGKFDFHHANKINGQ 385 (488)
T ss_dssp CCCCCCCCCTTCCEEEEEEEECHH-HHHHHHHHHHHHHGGGGGTTSCHHHHCCCSCCCCCCCSCCCGGGCGGGCEEETTB
T ss_pred ccCCCCcccccccceEEEEEeccc-ccccccccccccccccccccccccccccccccCccccccccccccccceeeECCe
Confidence 00 0 11222222100 00000 0000 0 00 00000 00124799999
Q ss_pred CCC--CceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCcccee---eEEeEEEEccCceEEEEEEeCC---C
Q 009054 201 GSN--GASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQ---TTYSSLDVHVGQSYSVLVTMDQ---P 272 (545)
Q Consensus 201 ~~~--~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p---~~~~~v~l~pgeR~dv~v~~~~---~ 272 (545)
.++ .+.++++.|+++||+|+|.+....+.||||||.|+|++.||....+ ...|+|.|. |+++.|+++++. .
T Consensus 386 ~~~~~~~~~~~~~G~~e~w~l~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~~kDTV~v~-g~~~~i~~~f~~~~~~ 464 (488)
T 3od3_A 386 AFDMNKPMFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVKVE-GNVSEVLVKFNHDAPK 464 (488)
T ss_dssp CCCTTCCSEECCBSSCEEEEEECTTCCCCEEEEETTCCBEEEEBTTBCCCGGGSSSBSEEEES-SSEEEEEECBCSCCCG
T ss_pred eCCCCCCceEcCCCCEEEEEEEeCCCCCCccEEEcCceEEEeccCCCccccccCCceeEEEeC-CCEEEEEEEeccCCCC
Confidence 973 3568999999999999999976678999999999999999987653 468999999 999999999974 3
Q ss_pred CcceEEEEeec
Q 009054 273 PQDFYIAVSTR 283 (545)
Q Consensus 273 ~g~y~~~~~~~ 283 (545)
+|.|.++||..
T Consensus 465 ~G~~m~HCH~l 475 (488)
T 3od3_A 465 EHAYMAHCHLL 475 (488)
T ss_dssp GGCEEEEESSH
T ss_pred CCCEEEeCCch
Confidence 57999999965
No 68
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=99.37 E-value=1.9e-11 Score=128.85 Aligned_cols=226 Identities=12% Similarity=0.108 Sum_probs=150.6
Q ss_pred EEEEEEEEEEEecC-------------CCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCC-CCceEee--CC---cc
Q 009054 31 RFFTWNVTYGDIYP-------------LGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLP-EPFLISW--NG---VQ 91 (545)
Q Consensus 31 ~~~~l~~~~~~~~~-------------dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~-~~~~iH~--HG---~~ 91 (545)
.++.|.+++-.... .|.....+++||+. .|+|+|++| ++++|+.|... ....+|+ +| ..
T Consensus 138 ~e~~l~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~-~p~~~v~~g-~~RlRliNa~~~~~~~~~i~~~~~~~~~ 215 (448)
T 3aw5_A 138 NDLPLVISDRRFIGGAPVYNPTPMEMIAGFLGNAVLVNGVK-DAVFKLSGG-SYRLRLVNGSNARLYMLSIVKKNGDVVP 215 (448)
T ss_dssp TEEEEEEEEEEEETTEEECCCCHHHHHHCCCCSEEEETTEE-TCEEEEEEE-EEEEEEEECSSSCCEEEEEEETTSCEEC
T ss_pred ceEEEEEEeeccCCCcccccccccccccCccccEEEECCcc-cceEEECCC-eEEEEEEcCCCcceEEEEEEcCCCCCcc
Confidence 56666666654332 12234578999985 699999999 99999999984 5678999 77 43
Q ss_pred CCCCCCCCCCCc-----c-CCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhc---C----------eeeEEE--EeCC
Q 009054 92 QRRNSYEDGVYG-----T-TCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAA---G----------GFGGIR--ILSR 150 (545)
Q Consensus 92 ~~~~~~~DGv~~-----~-q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~---G----------l~G~li--V~~~ 150 (545)
+.. -..||.+. + ...|.|||+++..++++ .|.||..++....... + -...++ +.+.
T Consensus 216 ~~v-ia~DG~~~~~P~~~~~l~l~pgeR~dvlv~~~--~~~y~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (448)
T 3aw5_A 216 MRL-IAVDQGFLARPIEVRALFLAPAERAEVVVELG--EGVYLLKNTPFDPMHLEMGHGMQEALPEGSEYTIATFLVEGK 292 (448)
T ss_dssp EEE-EEETTEEEEEEEEESCEEECTTCEEEEEEEEC--SEEEEEEECCCCCCCCTTSSCCCCSSCTTSCEEEEEEEEEEE
T ss_pred EEE-EEeCCCccCCceEeceEEECCcceEEEEEECC--CCceEEEccccccccCccccccccccCCCCCceEEEEEEcCC
Confidence 332 46798642 2 45699999999999974 4789988775321000 0 111222 2121
Q ss_pred CCCCCC--CCC-------CCCcceEEEeeeeecchhhHHHhhccCCCCCCCCeEEEcccCCC--CceEE-EeCCcEEEEE
Q 009054 151 PLIPVP--FPE-------PAGDFTVLIGDWYKANHNKLKSVLDRGHRLPSPDGILINGHGSN--GASFT-VEQGKTYRFR 218 (545)
Q Consensus 151 ~~~~~~--~~~-------~~~e~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~--~~~~~-v~~G~~~rlR 218 (545)
...+.| ... ...+..+.+. .+ ...++|||+.+. .+.+. ++.|++++|+
T Consensus 293 ~~~~~p~~L~~lp~~~~~~~~~~~~~l~---------------~~-----~~~~~iNg~~~~~~~p~~~~~~~g~~v~~~ 352 (448)
T 3aw5_A 293 GEAVPVEALSDPPPEPPKPTRTRRFALS---------------LS-----GMQWTINGMFWNASNPLFEHVSVEGVELWE 352 (448)
T ss_dssp CCCCCCCCCSCCCCCCCCCSEEEEEEEE---------------EE-----TTEEEETTBCCCTTCTTCCCEEECEEEEEE
T ss_pred CCCCCccccCCCCCCCCCCCceEEEEEe---------------CC-----CceeeECCCcCCCCCCceeccCCCCeEEEE
Confidence 110000 000 0001111110 00 125899999973 34567 9999999999
Q ss_pred EEecCCCCeeeEEEeCceeEEEeecCccc------------ee---eEEeEEEEccCceEEEEEEeC---C-CCcceEEE
Q 009054 219 ISNVGLQHSLNFRIQGHKMKLVEVEGTHT------------IQ---TTYSSLDVHVGQSYSVLVTMD---Q-PPQDFYIA 279 (545)
Q Consensus 219 liNa~~~~~~~~~i~gh~~~via~DG~~~------------~p---~~~~~v~l~pgeR~dv~v~~~---~-~~g~y~~~ 279 (545)
|.|.+....+.||||||.|+|++.+|... .| ...|++.+.||+.+.+.+++. . .| |.++
T Consensus 353 i~N~~~~~~HP~HLHG~~F~Vl~~~G~~~~~~~~~~~~~~~~p~~~~~rDTv~v~pg~~~~i~vrF~~~~adnp--w~~H 430 (448)
T 3aw5_A 353 IVNDKASMPHPMHLHGFPMWIIERKDSPRQVAELAVDNRGRLPTDLGLKDTVLIWPGETVKIVVNFDAKKRGQL--FPFH 430 (448)
T ss_dssp EEECSSSCCEEEEESSSCBEEEEEESCCHHHHTTCCSTTCCCGGGGSCBSEEEECTTCEEEEEEEECGGGTTCE--EEEE
T ss_pred EEcCCCCCCcCEEECCceEEEEEecCCCcccccccccccCCCccccCCccEEEeCCCCEEEEEEEecccCCCCc--EEEE
Confidence 99998446689999999999999999764 23 578999999999999997775 2 44 9999
Q ss_pred Eeec
Q 009054 280 VSTR 283 (545)
Q Consensus 280 ~~~~ 283 (545)
||..
T Consensus 431 CHil 434 (448)
T 3aw5_A 431 CHNL 434 (448)
T ss_dssp ESSH
T ss_pred cCCh
Confidence 9965
No 69
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.33 E-value=3.7e-12 Score=136.31 Aligned_cols=96 Identities=17% Similarity=0.098 Sum_probs=75.0
Q ss_pred CCeeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcc
Q 009054 45 LGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQI 124 (545)
Q Consensus 45 dG~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~ 124 (545)
++....+|++|++|++|+|+|++||+|+++++|.+...-. +||+.+.. .|+ ...|.||++++|.|++ +++
T Consensus 497 ~~v~V~m~~~n~~f~pp~I~V~~Gd~V~~~ltN~d~~~Dv--~Hgf~ip~----~gv---~~~i~PG~t~t~~Fta-~~p 566 (595)
T 1fwx_A 497 NKVRVYMSSVAPSFSIESFTVKEGDEVTVIVTNLDEIDDL--THGFTMGN----YGV---AMEIGPQMTSSVTFVA-ANP 566 (595)
T ss_dssp TEEEEEEEEETTEESCSEEEEETTCEEEEEEEECCCSTTC--CEEEEETT----TTE---EEEECTTCEEEEEEEC-CSC
T ss_pred CccceeEEEecCcccCCEEEEECCCEEEEEEEeCCCCCCc--eeeEEecC----CCc---ceeeCCCCeEEEEEEC-CCC
Confidence 4678899999999999999999999999999998653211 35554432 222 3679999999999995 789
Q ss_pred eeeeeecCch-hhhhcCeeeEEEEeCC
Q 009054 125 GSYFYFPSVG-FQKAAGGFGGIRILSR 150 (545)
Q Consensus 125 Gt~wYH~H~~-~~~~~Gl~G~liV~~~ 150 (545)
|+||||||.. .....||+|.|+|+++
T Consensus 567 GtY~yhC~e~Cg~~H~gM~G~IiV~p~ 593 (595)
T 1fwx_A 567 GVYWYYCQWFCHALHMEMRGRMLVEPK 593 (595)
T ss_dssp EEEEEECCSCCSTTCTTCEEEEEEECC
T ss_pred EEEEEECCCCCCCCccCCEEEEEEEcC
Confidence 9999999932 1111399999999975
No 70
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase, multicopper oxidase, hexamer; 2.30A {Streptomyces antibioticus} PDB: 3gyr_A
Probab=99.32 E-value=5.4e-11 Score=129.10 Aligned_cols=230 Identities=11% Similarity=0.043 Sum_probs=144.3
Q ss_pred EEEEEcCcccCceEEEecCCEEEEEEEeCC-CCCceEeeCCc-------cCCCCCCCCCCCc----c-C-------CcCC
Q 009054 50 QGILINGQFPGPDIYSVTNDNLIINVHNSL-PEPFLISWNGV-------QQRRNSYEDGVYG----T-T-------CPIP 109 (545)
Q Consensus 50 ~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l-~~~~~iH~HG~-------~~~~~~~~DGv~~----~-q-------~~i~ 109 (545)
..+++||+. .|.|.|++| ++++||.|.. .....+++.|. .+. -...||.+. . + ..|.
T Consensus 255 d~~lVNG~~-~p~~~V~~g-~yRlRliNas~~r~~~l~i~~h~g~~~~~~~~-vIa~DG~~l~~P~~~~~~~~~~~l~l~ 331 (612)
T 2g23_A 255 PYTTVNGRI-WPYADVDDG-WYRLRLVNASNARIYNLVLIDEDDRPVPGVVH-QIGSDGGLLPRPVPVDFDDTLPVLSAA 331 (612)
T ss_dssp SEEEETTEE-SCEEEEESS-EEEEEEEECCSSCCEEEEEECTTSCBCTTSEE-EEEETTEEEEEEEEECSSSSSSSEEEC
T ss_pred CEEEECCcc-CCeEEecCC-eEEEEEEecCCCeEEEEEEcCCCCccCCCcEE-EEEeCCeEccCCEEecccCcccEEEEC
Confidence 467999994 799999999 9999999997 45667887654 111 135788643 1 3 3589
Q ss_pred CCCeEEEEEEeCCcce-eeeeecCchhhh------hc----CeeeEEEEeCCC-CC--CCCCCC------CCCc-----c
Q 009054 110 PGKNFTYILQVKDQIG-SYFYFPSVGFQK------AA----GGFGGIRILSRP-LI--PVPFPE------PAGD-----F 164 (545)
Q Consensus 110 pG~~~~y~~~~~~~~G-t~wYH~H~~~~~------~~----Gl~G~liV~~~~-~~--~~~~~~------~~~e-----~ 164 (545)
|||+++.-+++.+.+| +++...-..... .+ +..--|.|..+. .+ ..|... ...+ .
T Consensus 332 pgeR~dvlVd~~~~~g~~~~L~~~~~~~~~g~~~~~~~~~~~~vm~f~V~~~~~~~~~~~P~~L~~~~~~l~~~~~~~~r 411 (612)
T 2g23_A 332 PAERFDLLVDFRALGGRRLRLVDKGPGAPAGTPDPLGGVRYPEVMEFRVRETCEEDSFALPEVLSGSFRRMSHDIPHGHR 411 (612)
T ss_dssp TTCEEEEEEECTTCTTCEEEEEECCTTSCTTSCBGGGTBSCCEEEEEEEECCSCCCCCCCCSSCCSSCCCCCTTSCCEEE
T ss_pred CcCeEEEEEECCCCCCCEEEEEeCCccCCCCccccccCccccceEEEEEccCCCCCCCCCChhhccccccCCccccccee
Confidence 9999999999765566 466665432110 00 111124454332 11 111110 0001 1
Q ss_pred eEEEe------------eeeecchhhHHH-hhc-cC-----CCCCCCCeEEEcccCC-CCceEEEeCCcEEEEEEEecCC
Q 009054 165 TVLIG------------DWYKANHNKLKS-VLD-RG-----HRLPSPDGILINGHGS-NGASFTVEQGKTYRFRISNVGL 224 (545)
Q Consensus 165 ~l~~~------------d~~~~~~~~~~~-~~~-~~-----~~~~~~~~~liNG~~~-~~~~~~v~~G~~~rlRliNa~~ 224 (545)
.+++. -|.......-.. .+. .+ ........++|||+.+ +.+.++++.|++++|+|+|.+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iNG~~~~~~~~~~v~~G~~v~w~l~N~~~ 491 (612)
T 2g23_A 412 LIVLTPPGTKGSGGHPEIWEMAEVEDPADVQVPAEGVIQVTGADGRTKTYRRTAATFNDGLGFTIGEGTHEQWTFLNLSP 491 (612)
T ss_dssp EEEECCTTCTTSTTCCCEEEEEEEC-----CCSCTTEEEEECTTSCEEEEEEEECSTTSCCCEEEETTCEEEEEEEECSS
T ss_pred EEeeccccccccccccceeeccccccccccccccccceeeeccCCceeEEEECCccCCCCCceEecCCCEEEEEEEeCCC
Confidence 11110 111110000000 000 00 0001123688999987 4578999999999999999985
Q ss_pred CCeeeEEEeCceeEEEeecCc------------------------cc---eeeEEeEEEEccCceEEEEEEeCCCCcceE
Q 009054 225 QHSLNFRIQGHKMKLVEVEGT------------------------HT---IQTTYSSLDVHVGQSYSVLVTMDQPPQDFY 277 (545)
Q Consensus 225 ~~~~~~~i~gh~~~via~DG~------------------------~~---~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~ 277 (545)
..+.||||||.|+|++.+|. .. ++...|++.+.||+++.|.++++..+|.|.
T Consensus 492 -~~HPiHlHg~~F~Vl~r~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~e~~~kDTv~v~Pg~~~~i~~~~~~~pG~w~ 570 (612)
T 2g23_A 492 -ILHPMHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLDPDTPVPLAPNELGHKDVFQVPGPQGLRVMGKFDGAYGRFM 570 (612)
T ss_dssp -SCEEEEESSCCEEEEEEEEEECTTEETTTTEESSCEEEEEEEECCCCTTSSSCBSEEEECSSEEEEEEEECCSCCEEEE
T ss_pred -CCCCeEEcCceEEEecccCcccccccccccCcccccccccccccCCCcccccccCeEEECCCcEEEEEEEeCCCCccEE
Confidence 46799999999999987542 11 223689999999999999999986799999
Q ss_pred EEEeec
Q 009054 278 IAVSTR 283 (545)
Q Consensus 278 ~~~~~~ 283 (545)
++||..
T Consensus 571 ~HCHil 576 (612)
T 2g23_A 571 YHCHLL 576 (612)
T ss_dssp EEESSH
T ss_pred EEeCch
Confidence 999965
No 71
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=99.27 E-value=2.1e-11 Score=101.88 Aligned_cols=78 Identities=12% Similarity=0.100 Sum_probs=63.5
Q ss_pred cCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCcc-CCcCCCCCeEEEEEEeCCcceeeeeecCc
Q 009054 55 NGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGT-TCPIPPGKNFTYILQVKDQIGSYFYFPSV 133 (545)
Q Consensus 55 ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~-q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~ 133 (545)
+..|..++|+|++||+|+ ++|..+..+++|+++. .||.... +..|.||++++|.| +++|+|||||+.
T Consensus 27 ~~~F~P~~i~v~~Gd~V~--~~N~d~~~H~v~~~~~-------~~g~~~~~~~~~~pG~~~~~tf---~~~G~y~y~C~~ 94 (105)
T 2ov0_A 27 KMKYETPELHVKVGDTVT--WINREAMPHNVHFVAG-------VLGEAALKGPMMKKEQAYSLTF---TEAGTYDYHCTP 94 (105)
T ss_dssp TTEESSSEEEECTTCEEE--EEECSSSCBCCEECTT-------TSSSSCEECCCBCTTEEEEEEE---CSCEEEEEECSS
T ss_pred ecEEcCCEEEECCCCEEE--EEECCCCCEEEEEcCC-------CCCcccccccccCCCCEEEEEe---CCCEEEEEEeCC
Confidence 455667899999999965 5699888999999863 2565545 56799999999988 369999999998
Q ss_pred hhhhhcCeeeEEEEe
Q 009054 134 GFQKAAGGFGGIRIL 148 (545)
Q Consensus 134 ~~~~~~Gl~G~liV~ 148 (545)
|. ||.|.|+|+
T Consensus 95 H~----gM~G~i~V~ 105 (105)
T 2ov0_A 95 HP----FMRGKVVVE 105 (105)
T ss_dssp CT----TCEEEEEEC
T ss_pred CC----CCEEEEEEC
Confidence 65 999999985
No 72
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A
Probab=99.27 E-value=1.5e-11 Score=132.01 Aligned_cols=223 Identities=12% Similarity=0.068 Sum_probs=138.9
Q ss_pred EEEEEEcCcccCceEEEecCCEEEEEEEeCCCC-CceEeeCCc-cCCCCCCCCCCCc-----c-CCcCCCCCeEEEEEEe
Q 009054 49 QQGILINGQFPGPDIYSVTNDNLIINVHNSLPE-PFLISWNGV-QQRRNSYEDGVYG-----T-TCPIPPGKNFTYILQV 120 (545)
Q Consensus 49 ~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~-~~~iH~HG~-~~~~~~~~DGv~~-----~-q~~i~pG~~~~y~~~~ 120 (545)
...+++||+. .|.|.|+.| ++++|+.|.... ...+|+.|. .+.. -..||.+. + ...|.|||+++..+++
T Consensus 230 ~d~~liNG~~-~p~~~v~~~-~~RlRliNa~~~~~~~~~i~~~~~~~v-ia~DG~~~~~P~~~~~l~l~pgeR~dvlv~~ 306 (513)
T 2wsd_A 230 GETILVNGKV-WPYLEVEPR-KYRFRVINASNTRTYNLSLDNGGDFIQ-IGSDGGLLPRSVKLNSFSLAPAERYDIIIDF 306 (513)
T ss_dssp CSEEEETTEE-SCEEECCSS-EEEEEEEECCSSCCEEEEETTCCCEEE-EEETTEEEEEEEEESEEEECTTCEEEEEEEC
T ss_pred cceEEECCcc-cceEEecCC-EEEEEEEccCCcceEEEEECCCCeEEE-EccCCCcccCceEeCeEEECCeeeEEEEEEC
Confidence 3578999995 799999885 999999999854 568888776 3332 46799532 2 4569999999999997
Q ss_pred CCcceeeee-ecCch--hhhhcCe-eeEEEEeCCC--C----CCCCCCCCCCcc-eE--EEeeeeecchhhHHHhhccCC
Q 009054 121 KDQIGSYFY-FPSVG--FQKAAGG-FGGIRILSRP--L----IPVPFPEPAGDF-TV--LIGDWYKANHNKLKSVLDRGH 187 (545)
Q Consensus 121 ~~~~Gt~wY-H~H~~--~~~~~Gl-~G~liV~~~~--~----~~~~~~~~~~e~-~l--~~~d~~~~~~~~~~~~~~~~~ 187 (545)
++.+|.++. ..-.. .....+. ...+-..... . ...|......+. .. .-.+..+. +....
T Consensus 307 ~~~~g~~~~l~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~--------l~~~~ 378 (513)
T 2wsd_A 307 TAYEGESIILANSAGCGGDVNPETDANIMQFRVTKPLAQKDESRKPKYLASYPSVQHERIQNIRTLK--------LAGTQ 378 (513)
T ss_dssp GGGTTCEEEEEECCCSSSSCCTTTTTEEEEEECCSCCSSCCCCCCCSBCSCCGGGCCCCEEEEEEEE--------EEEEE
T ss_pred CCCCCcEEEEEecccccccCCCCCCcceEEEEeccCcccCccCCCCccccCCCCcccCCCcceEEEE--------EEeec
Confidence 544676322 21110 0000011 1222222111 0 001100000000 00 00000000 00000
Q ss_pred CCCCCCeEEEcccCCCC-ceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCc---------------c-----
Q 009054 188 RLPSPDGILINGHGSNG-ASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGT---------------H----- 246 (545)
Q Consensus 188 ~~~~~~~~liNG~~~~~-~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~---------------~----- 246 (545)
.......++|||+.+.. ..+.++.|++++|+|.|.+. ..+.||||||.|+|++.++. +
T Consensus 379 ~~~g~~~~~iNg~~~~~~~~~~~~~g~~~~w~l~N~~~-~~HP~HlHG~~F~Vl~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (513)
T 2wsd_A 379 DEYGRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTR-GTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVPPP 457 (513)
T ss_dssp CTTSCEEEEETTBCTTSCCCBCCBTTCEEEEEEEECSS-SCEEEEESSCCEEEEEEEEBCHHHHHHHCCCCBSSCCBCCC
T ss_pred CCCCCceEeECCccCCCcccEecCCCCEEEEEEEcCCC-CCcCEeEeCceEEEEEecCcccccccccccccccCCCCCCC
Confidence 00011257899998733 45688999999999999886 46799999999999998762 1
Q ss_pred -ceeeEEeEEEEccCceEEEEEEeCCCCcceEEEEeec
Q 009054 247 -TIQTTYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTR 283 (545)
Q Consensus 247 -~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~ 283 (545)
-++...|++.|.||+.+.+++++++.||.|.++||..
T Consensus 458 ~~~~~~rDTv~v~pg~~~~i~~~f~dnpG~w~~HCHil 495 (513)
T 2wsd_A 458 PSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVWHCHAL 495 (513)
T ss_dssp GGGSSCBSEEEECTTEEEEEEEECCSCCEEEEEEESCH
T ss_pred ccccCcccEEEeCCCCEEEEEEEecCCCCCEEEEcCCh
Confidence 0234789999999999999999965799999999965
No 73
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*
Probab=99.26 E-value=5.7e-11 Score=127.67 Aligned_cols=226 Identities=13% Similarity=0.074 Sum_probs=139.6
Q ss_pred EEEEEEcCcccCceEEEecCCEEEEEEEeCCC-CCceEeeCC-------ccCCCCCCCCCCC----c-c-CCcCCCCCeE
Q 009054 49 QQGILINGQFPGPDIYSVTNDNLIINVHNSLP-EPFLISWNG-------VQQRRNSYEDGVY----G-T-TCPIPPGKNF 114 (545)
Q Consensus 49 ~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~-~~~~iH~HG-------~~~~~~~~~DGv~----~-~-q~~i~pG~~~ 114 (545)
...+++||+ +.|.|.|+.| ++++||.|... ....++++| ..+. --..||.+ . + ...|.|||++
T Consensus 201 gd~~lvNG~-~~p~~~v~~~-~~RlRliNa~~~~~~~l~i~~~~~~~~~h~~~-vIa~DG~~~~~P~~~~~l~l~pgeR~ 277 (534)
T 3abg_A 201 GDVIHVNGQ-PWPFKNVEPR-KYRFRFLDAAVSRSFGLYFADTDAIDTRLPFK-VIASDSGLLEHPADTSLLYISMAERY 277 (534)
T ss_dssp CSEEEETTE-ESCBCBCCSS-EEEEEEEECCSSCCEEEEECCSSSTTCCCCEE-EEEETTEEEEEEEEESCEEECTTCEE
T ss_pred CceeccCCc-cCceEEecCc-EEEEEEEecCCcceEEEEEecccCcCCCccEE-EEEeCCCcccCceEeceEEECCccEE
Confidence 457899998 5899999985 99999999984 456888866 2222 14578852 2 2 5569999999
Q ss_pred EEEEEeCCcce-eeeeecCchhhh-------hcCeeeEEEEeCCCCCCCCCCCCCCcceEEEeeee-ecchhhHHHhhcc
Q 009054 115 TYILQVKDQIG-SYFYFPSVGFQK-------AAGGFGGIRILSRPLIPVPFPEPAGDFTVLIGDWY-KANHNKLKSVLDR 185 (545)
Q Consensus 115 ~y~~~~~~~~G-t~wYH~H~~~~~-------~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~-~~~~~~~~~~~~~ 185 (545)
+..+++.+.+| +||......... .....+.+-.........+. ....+..+.... ..........+.-
T Consensus 278 dvlv~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~---~~~~P~~L~~~~~p~~~~~~~~~~~~ 354 (534)
T 3abg_A 278 EVVFDFSDYAGKTIELRNLGGSIGGIGTDTDYDNTDKVMRFVVADDTTQPD---TSVVPANLRDVPFPSPTTNTPRQFRF 354 (534)
T ss_dssp EEEEECSSCTTSEEEEECCCCSSSSCCSCSSSTTTSEEEEEECCCCSSCSC---CCCCCCCCCCCSCCCCCCCCCEEEEC
T ss_pred EEEEEcCCCCCceEEEEeccccccccccccCcCCcceeEEEecCCCCcCCC---CCCCccccccCCCCCCccccceEEEE
Confidence 99999755467 688765321000 00011222222111100000 000000000000 0000000000000
Q ss_pred CCCCCCCCeEEEcccCCC---Cc-eEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEee-cCc---ccee---eEEeE
Q 009054 186 GHRLPSPDGILINGHGSN---GA-SFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEV-EGT---HTIQ---TTYSS 254 (545)
Q Consensus 186 ~~~~~~~~~~liNG~~~~---~~-~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~-DG~---~~~p---~~~~~ 254 (545)
+ .....++|||+.+. .+ .+.++.|++++|.|.|.+....+.||||||.|+|++. +|. ...+ ...|+
T Consensus 355 ~---~~~~~w~iNG~~f~~~~~p~l~~v~~G~~~~w~i~N~~~~~~HP~HLHG~~F~Vl~~~~g~~~~~~~~~~~~~rDT 431 (534)
T 3abg_A 355 G---RTGPTWTINGVAFADVQNRLLANVPVGTVERWELINAGNGWTHPIHIHLVDFKVISRTSGNNARTVMPYESGLKDV 431 (534)
T ss_dssp S---CCCSTTCCCCBTTBCTTSCCCCEECTTCEEEEEEEECSSSCCCCEEESSCCEEEEEESSCCSSSCCCSGGGSCBSE
T ss_pred e---ccCceeEECCcccCCCCCcceeeccCCCEEEEEEEcCCCCCCcCEEECCeeEEEEEEcCCCCcCcCCccccCCcCe
Confidence 0 01235789999872 12 3579999999999999986667899999999999998 663 1111 46899
Q ss_pred EEEccCceEEEEEEeCCCCcceEEEEeec
Q 009054 255 LDVHVGQSYSVLVTMDQPPQDFYIAVSTR 283 (545)
Q Consensus 255 v~l~pgeR~dv~v~~~~~~g~y~~~~~~~ 283 (545)
+.+.||+++.|.+.+.+.||.|.++||..
T Consensus 432 V~v~pg~~v~I~~~~adnpG~w~~HCHil 460 (534)
T 3abg_A 432 VWLGRRETVVVEAHYAPFPGVYMFHCHNL 460 (534)
T ss_dssp ECCCSSEEEEEEEECCSCCEEEEEEESCH
T ss_pred EEcCCCCEEEEEEEECCCCccEEEecChH
Confidence 99999999999998444899999999965
No 74
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=99.17 E-value=3.3e-11 Score=106.18 Aligned_cols=94 Identities=12% Similarity=0.074 Sum_probs=72.6
Q ss_pred EEecCCCcEEEEEEEcCCCC-CCceeecCCceEEEe------eccC---cCCCCCCCCCCCCCCCccceEEeCCCCEEEE
Q 009054 415 VMGADFRGFIEIVFQNHENI-VQSWHIDGYNFWVVG------MNGG---VWTPASRNEYNLRDAVSRCTTQVYPKSWTAI 484 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~-~HP~HlHG~~F~Vl~------~g~g---~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~i 484 (545)
.+.++.|++|+|+|.|.+.. .|.||+|+....+.. ...+ .+.+.. ....++||..|.|++...+
T Consensus 36 ~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~~------~~~~~~~t~~l~pGet~~v 109 (139)
T 2aan_A 36 ELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPAD------KSNIIAESPLANGNETVEV 109 (139)
T ss_dssp EEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSC------CTTEEEECCCBCTTCEEEE
T ss_pred eEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccccCcc------cccccccccccCCCCEEEE
Confidence 46789999999999999888 899999987532111 0001 111110 1235789999999999999
Q ss_pred EEEeCCccceeeeecchhhhhcceEEEEEEe
Q 009054 485 YVALDNVGMWNVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 485 rf~adnpG~w~~HCHil~H~d~GMm~~~~V~ 515 (545)
.|.+++||.|.||||+..|+. ||+..+.|.
T Consensus 110 ~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 110 TFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp EEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred EEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 999999999999999999999 999999883
No 75
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=99.16 E-value=1.6e-09 Score=116.94 Aligned_cols=229 Identities=13% Similarity=0.084 Sum_probs=143.1
Q ss_pred EEEEEcCccc----------------CceEEEecCCEEEEEEEeCCC-CCceEeeCCccCCCCCCCCCCCc----c-CCc
Q 009054 50 QGILINGQFP----------------GPDIYSVTNDNLIINVHNSLP-EPFLISWNGVQQRRNSYEDGVYG----T-TCP 107 (545)
Q Consensus 50 ~~~~~ng~~p----------------gP~i~v~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~~DGv~~----~-q~~ 107 (545)
..+++||+.. .++|+|++|+++++||.|... ....++.+|..+.. -..||++. + ...
T Consensus 226 d~~liNG~~~~~c~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~i~gh~~~V-Ia~DG~~v~P~~~~~l~ 304 (580)
T 3sqr_A 226 ENTLMNGTNTFDCSASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTV-IANDLVPIVPYTTDTLL 304 (580)
T ss_dssp SEEEETTBCCCCCTTCCCTTBCCCCCCCEEECCTTCEEEEEEEECCSSCCEEEEETTCCEEE-EEETTEEEEEEEESSEE
T ss_pred ceEEECCcccCCCccccccccccCCCceeEEEcCCCEEEEEEEeccCCceeeEEeCCceEEE-EEeCCccCCceEeeEEE
Confidence 4678999742 379999999999999999984 45688998876543 46799753 2 456
Q ss_pred CCCCCeEEEEEEeCCcceeeeeecCchhh----hhcCeeeEEEEeCCCCCCCCCCCCCCcce-EEEee--eeecch--hh
Q 009054 108 IPPGKNFTYILQVKDQIGSYFYFPSVGFQ----KAAGGFGGIRILSRPLIPVPFPEPAGDFT-VLIGD--WYKANH--NK 178 (545)
Q Consensus 108 i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~----~~~Gl~G~liV~~~~~~~~~~~~~~~e~~-l~~~d--~~~~~~--~~ 178 (545)
|.|||+++..+++++.+|.||-.+..... ...+..-+++.........|.... .+.. ..+.+ ..+... ..
T Consensus 305 i~pGqRydVlv~a~~~~g~Y~i~a~~~~~~~~~~~~~~~~aiL~Y~~~~~~~P~~~~-~~~~~~~~~~~~~~L~P~~~~~ 383 (580)
T 3sqr_A 305 IGIGQRYDVIVEANAAADNYWIRGNWGTTCSTNNEAANATGILRYDSSSIANPTSVG-TTPRGTCEDEPVASLVPHLALD 383 (580)
T ss_dssp ECTTCEEEEEEECCSCSSEEEEECCCCTTTSCBTTGGGCEEEEESSTTCCCCCCCCC-CCCCCCSCCSCGGGCCBSSCCB
T ss_pred EccceEEEEEEEeCCCCCeEEEEEecccccCccCCCCceEEEEEECCCCCCCCCCCC-CCccchhhcccccccccCCCCC
Confidence 99999999999976668999999876421 111112233333321111111000 0000 00000 000000 00
Q ss_pred H------HHhhccCCCCCCCCeEEEcccCCC----Cc-----------------eEEE----eCCcEEEEEEEecCC-CC
Q 009054 179 L------KSVLDRGHRLPSPDGILINGHGSN----GA-----------------SFTV----EQGKTYRFRISNVGL-QH 226 (545)
Q Consensus 179 ~------~~~~~~~~~~~~~~~~liNG~~~~----~~-----------------~~~v----~~G~~~rlRliNa~~-~~ 226 (545)
+ ...+.-+ ......+.|||..+. .| .+.+ +.|++++|.|-|.+. ..
T Consensus 384 ~~~~~~~~~~l~~~--~~~~~~w~iN~~s~~~~~~~P~L~~~~~g~~~~~~~~~~~~~~~~~~~~~~VeiVi~n~~~~~~ 461 (580)
T 3sqr_A 384 VGGYSLVDEQVSSA--FTNYFTWTINSSSLLLDWSSPTTLKIFNNETIFPTEYNVVALEQTNANEEWVVYVIEDLTGFGI 461 (580)
T ss_dssp CCSEEEEEEEEEEE--ESSSEEEEETTBCCCCCTTSCHHHHHHTTCCCCCGGGCEEEECC----CCEEEEEEEECSSSCC
T ss_pred CCCccceEEEEEec--cCCceeEEECCEecccCCCCCchhhhhcCCccCCCCcceeecccccCCCcEEEEEEeCCCcccc
Confidence 0 0000000 011235677887641 11 2334 358999999999871 24
Q ss_pred eeeEEEeCceeEEEeecCc------------cceeeEEeEEEEccCceEEEEEEeCCCCcceEEEEeec
Q 009054 227 SLNFRIQGHKMKLVEVEGT------------HTIQTTYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTR 283 (545)
Q Consensus 227 ~~~~~i~gh~~~via~DG~------------~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~ 283 (545)
.++||+|||.|+|++.+.+ +..|...|++.+.||+.+.+.++++ .||.|.+|||..
T Consensus 462 ~HP~HLHGh~F~vv~~g~G~f~~~~~~~~~nl~nP~~rDTv~v~~~g~~~irf~ad-NPG~W~~HCHi~ 529 (580)
T 3sqr_A 462 WHPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLD-NPGSWLLHCHIA 529 (580)
T ss_dssp CEEEEESSCCEEEEEEESSCCCTTTSGGGCCCBSCCEESEEEECTTSEEEEEEESC-SCEEEEEEECSH
T ss_pred ceeeEecCceEEEEecCCCccCccccccccccCCCceeeEEEeCCCceEEEEEEcC-CCeeeEEEECcH
Confidence 7899999999999998432 2358899999999999999999998 799999999954
No 76
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=99.13 E-value=5.1e-11 Score=99.53 Aligned_cols=84 Identities=11% Similarity=-0.037 Sum_probs=66.3
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEe-CCccc
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVAL-DNVGM 493 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~a-dnpG~ 493 (545)
.+.++.|++|+| .|.+...|+||+||..|... .|.. .+....++..+.||+...++|.+ +.||.
T Consensus 20 ~i~v~~Gd~V~~--~N~~~~~H~v~~~~~~~~~~---~g~~----------~~~~~~~~~~i~pG~~~~~~f~~~~~~G~ 84 (105)
T 3cvb_A 20 NVTVHPGDTVKW--VNNKLPPHNILFDDKQVPGA---SKEL----------ADKLSHSQLMFSPGESYEITFSSDFPAGT 84 (105)
T ss_dssp EEEECTTEEEEE--EECSSCCEEEEECTTSSGGG---CHHH----------HHHHCEEEEECSTTCEEEEEECTTSCSEE
T ss_pred EEEEcCCCEEEE--EECCCCCCeEEEeCCCCCcc---cccc----------cccccccccccCCCCeEEEEEecCCCCee
Confidence 468899999876 58888899999999876431 0100 00112578999999999999988 79999
Q ss_pred eeeeecchhhhhcceEEEEEEe
Q 009054 494 WNVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 494 w~~HCHil~H~d~GMm~~~~V~ 515 (545)
|.|||| .|...||+..+.|.
T Consensus 85 y~y~C~--~H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 85 YTYYCA--PHRGAGMVGKITVE 104 (105)
T ss_dssp EEEECT--TTGGGTCEEEEEEC
T ss_pred EEEEeC--CchhcCCEEEEEEc
Confidence 999999 59999999999985
No 77
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=99.08 E-value=3.4e-10 Score=94.67 Aligned_cols=83 Identities=13% Similarity=0.244 Sum_probs=62.7
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCC----cc-CCcCCCCCeEEEEEEeCCcceeeeeecCch
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVY----GT-TCPIPPGKNFTYILQVKDQIGSYFYFPSVG 134 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~----~~-q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~ 134 (545)
.+.|+|++||+|++ +|.....+++|+|+.... ..+|.. .. ...+.||++++|.|++++++|+||||||
T Consensus 19 P~~i~v~~Gd~V~~--~n~~~~~H~~~~~~~~~~---~~~g~~~~~~~~~~~~~~pG~~~~~~f~~~~~~G~y~y~C~-- 91 (106)
T 2gim_A 19 PAKLTIKPGDTVEF--LNNKVPPHNVVFDAALNP---AKSADLAKSLSHKQLLMSPGQSTSTTFPADAPAGEYTFYCE-- 91 (106)
T ss_dssp SSEEEECTTCEEEE--EECSSSCCCBEECSSSST---TCCHHHHHHHCBCSCCCSTTCEEEEECCTTCCSEEEEEECT--
T ss_pred CCEEEECCCCEEEE--EECCCCCceEEEeCCCCc---ccccccchhccccceeeCCCCEEEEEEecCCCCceEEEEeC--
Confidence 47899999998754 588777899998875432 123320 01 2458999999999984368999999999
Q ss_pred hhhhcCeeeEEEEeC
Q 009054 135 FQKAAGGFGGIRILS 149 (545)
Q Consensus 135 ~~~~~Gl~G~liV~~ 149 (545)
.+...||.|.|+|++
T Consensus 92 ~H~~~GM~G~i~V~~ 106 (106)
T 2gim_A 92 PHRGAGMVGKITVAG 106 (106)
T ss_dssp TTGGGTCEEEEEECC
T ss_pred ChhhcCcEEEEEEcC
Confidence 567789999999963
No 78
>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus}
Probab=98.99 E-value=1.1e-08 Score=112.32 Aligned_cols=90 Identities=12% Similarity=0.103 Sum_probs=74.8
Q ss_pred CeEEEcccCC-CCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccc------------------------
Q 009054 193 DGILINGHGS-NGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHT------------------------ 247 (545)
Q Consensus 193 ~~~liNG~~~-~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~------------------------ 247 (545)
..+.+||+.+ ....+.++.|++++|.|.|.+.. .+.||||||.|+|++.+|...
T Consensus 459 ~~~~~n~~~~~~~~~~~~~~g~~~~w~i~N~~~~-~HP~HLHG~~F~Vl~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (612)
T 3gyr_A 459 KTYRRTARTFNDGLGFTIGEGTHEQWTFLNLSPI-LHPMHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLDPDTPVPL 537 (612)
T ss_dssp EEEEEEECSTTSCCCEEEETTCEEEEEEEECSSS-CEEEEESSCEEEEEEEEEEECTTEETTTTEESSCEEEEEEEECCC
T ss_pred ccccccCccCCCCcceEeCCCCEEEEEEEcCCCC-CcCEeECCCcEEEEeecCCcCccccccccccccccccccccccCc
Confidence 4678888876 34678899999999999999875 579999999999999776421
Q ss_pred ---eeeEEeEEEEccCceEEEEEEeCCCCcceEEEEeec
Q 009054 248 ---IQTTYSSLDVHVGQSYSVLVTMDQPPQDFYIAVSTR 283 (545)
Q Consensus 248 ---~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~~~~~~~ 283 (545)
++...|++.+.+|+.+.|.+++.+.||.|.++||..
T Consensus 538 ~~~~~~~kDTv~v~~~~~v~i~~rfadnpG~w~~HCHil 576 (612)
T 3gyr_A 538 APNELGHKDVFQVPGPQGLRVMGKFDGAYGRFMYHCHLL 576 (612)
T ss_dssp CTTCSSCBSEEEECSSEEEEEEEECCSCCEEEEEEESSH
T ss_pred ccccCCCCcEEEECCCCEEEEEEEeCCCCcceEEcCCCh
Confidence 122479999999999999999766899999999965
No 79
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.99 E-value=2e-09 Score=94.67 Aligned_cols=90 Identities=10% Similarity=0.018 Sum_probs=66.9
Q ss_pred cccCceEEEecCCEEEEEEEeCCCC-CceEeeCCccCC------------C---CCCCCCCC-cc--CCcCCCCCeEEEE
Q 009054 57 QFPGPDIYSVTNDNLIINVHNSLPE-PFLISWNGVQQR------------R---NSYEDGVY-GT--TCPIPPGKNFTYI 117 (545)
Q Consensus 57 ~~pgP~i~v~~Gd~v~v~~~N~l~~-~~~iH~HG~~~~------------~---~~~~DGv~-~~--q~~i~pG~~~~y~ 117 (545)
+|--+.|+|++||+|+++|+|.-.. .++++.|+.... + ....++.+ .. ...|.||+++++.
T Consensus 31 ~F~p~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~t~~l~pGet~~v~ 110 (139)
T 2aan_A 31 AFDKTELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPADKSNIIAESPLANGNETVEVT 110 (139)
T ss_dssp SBSCSEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSCCTTEEEECCCBCTTCEEEEE
T ss_pred EEcCCeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccccCcccccccccccccCCCCEEEEE
Confidence 4445789999999999999999776 888888864210 0 00000111 11 2458999999999
Q ss_pred EEeCCcceeeeeecCchhhhhcCeeeEEEEe
Q 009054 118 LQVKDQIGSYFYFPSVGFQKAAGGFGGIRIL 148 (545)
Q Consensus 118 ~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~ 148 (545)
|++ +++|+|+||||...+.. ||.|.|+|+
T Consensus 111 f~~-~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 111 FTA-PAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp EEC-CSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred EEC-CCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 995 68999999999988888 999999984
No 80
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=98.90 E-value=1.4e-08 Score=89.23 Aligned_cols=91 Identities=14% Similarity=0.104 Sum_probs=66.8
Q ss_pred ccCceEEEecCCEEEEEEEe--CCCCCceEeeCCcc------------CC----CCCCCCCCCcc--CCcCCCCCeEEEE
Q 009054 58 FPGPDIYSVTNDNLIINVHN--SLPEPFLISWNGVQ------------QR----RNSYEDGVYGT--TCPIPPGKNFTYI 117 (545)
Q Consensus 58 ~pgP~i~v~~Gd~v~v~~~N--~l~~~~~iH~HG~~------------~~----~~~~~DGv~~~--q~~i~pG~~~~y~ 117 (545)
|-.+.|+|++||+|+++++| .....++++.+... .. .-+..|..... ...|.||++.++.
T Consensus 30 F~P~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pG~~~~~~ 109 (140)
T 1qhq_A 30 FAQTSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVT 109 (140)
T ss_dssp BSCSEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTTEEEECCCBCTTEEEEEE
T ss_pred EeCCeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCccccccccccceeeCCCceeEEE
Confidence 44578999999999999999 66777887776310 00 00000111111 2458999999999
Q ss_pred EEeCCcceeeeeecCchhhhhcCeeeEEEEeC
Q 009054 118 LQVKDQIGSYFYFPSVGFQKAAGGFGGIRILS 149 (545)
Q Consensus 118 ~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~ 149 (545)
|++ +.+|+|||||+...+...||.|.|+|.+
T Consensus 110 ~~~-~~~G~y~f~C~~~~H~~~GM~g~i~V~p 140 (140)
T 1qhq_A 110 FRT-PAPGTYLYICTFPGHYLAGMKGTLTVTP 140 (140)
T ss_dssp EEC-CSSEEEEEECCSTTTTTTTCEEEEEEEC
T ss_pred EEe-CCCeeEEEEeCCcCHhhcCCEEEEEEcC
Confidence 995 6799999999998888899999999974
No 81
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.83 E-value=7e-09 Score=86.57 Aligned_cols=84 Identities=12% Similarity=-0.002 Sum_probs=63.4
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEe-CCccc
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVAL-DNVGM 493 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~a-dnpG~ 493 (545)
.+.++.|++|+|+ |.+...|.||+|+..+.. . .|. + . ....+|++.+.||+...+.|.+ +.||.
T Consensus 21 ~i~v~~Gd~V~~~--n~~~~~H~~~~~~~~~~~--~-~g~-~---~------~~~~~~~~~~~pG~~~~~~f~~~~~~G~ 85 (106)
T 2gim_A 21 KLTIKPGDTVEFL--NNKVPPHNVVFDAALNPA--K-SAD-L---A------KSLSHKQLLMSPGQSTSTTFPADAPAGE 85 (106)
T ss_dssp EEEECTTCEEEEE--ECSSSCCCBEECSSSSTT--C-CHH-H---H------HHHCBCSCCCSTTCEEEEECCTTCCSEE
T ss_pred EEEECCCCEEEEE--ECCCCCceEEEeCCCCcc--c-ccc-c---c------hhccccceeeCCCCEEEEEEecCCCCce
Confidence 4678999999884 777788999999865421 0 010 0 0 0011467888999999998887 79999
Q ss_pred eeeeecchhhhhcceEEEEEEe
Q 009054 494 WNVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 494 w~~HCHil~H~d~GMm~~~~V~ 515 (545)
|.|||| .|...||+..+.|.
T Consensus 86 y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 86 YTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp EEEECT--TTGGGTCEEEEEEC
T ss_pred EEEEeC--ChhhcCcEEEEEEc
Confidence 999999 69999999999985
No 82
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.83 E-value=1.1e-08 Score=84.42 Aligned_cols=79 Identities=13% Similarity=0.113 Sum_probs=63.2
Q ss_pred cCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCch
Q 009054 55 NGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVG 134 (545)
Q Consensus 55 ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~ 134 (545)
|..|-...|++++||+|++.++|.....+++...+... ...+.||++.+|.|+ ++++|+|.|+|..
T Consensus 22 ~~~F~P~~i~v~~G~tV~~~~~n~d~~~H~~~~~~~~~------------~~~~~pg~~~~~~~t-~~~~G~Y~y~C~~- 87 (100)
T 4hci_A 22 DDYFNPNVITIPINESTTLLLKNKGKSEHTFTIKKLGI------------DVVVESGKEKNITVK-PKSAGTYELICRY- 87 (100)
T ss_dssp TTEEESSEEEECTTSCEEEEEEECSSSCEEEEEGGGTE------------EEEECTTCEEEEEEC-CCSCEEEEEECTT-
T ss_pred CCEEeCCEEEECCCCEEEEEEEcCCCceEEEEEecCCc------------ceeecCCcceeEEEe-cccCceEEEECcc-
Confidence 34454568999999999999999977777776655422 135789999999999 5889999999975
Q ss_pred hhhhcCeeeEEEEe
Q 009054 135 FQKAAGGFGGIRIL 148 (545)
Q Consensus 135 ~~~~~Gl~G~liV~ 148 (545)
+...||.|.|+|+
T Consensus 88 -H~~~gM~G~i~Ve 100 (100)
T 4hci_A 88 -HLLKGMEGKVIVK 100 (100)
T ss_dssp -TGGGTCEEEEEEC
T ss_pred -ccCCCCEEEEEEC
Confidence 4557899999995
No 83
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.79 E-value=1.9e-08 Score=87.44 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=57.8
Q ss_pred cCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCcc-CCcCCCCCeEEEEEEeCCcceeeeeecCc
Q 009054 55 NGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGT-TCPIPPGKNFTYILQVKDQIGSYFYFPSV 133 (545)
Q Consensus 55 ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~-q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~ 133 (545)
+..|-.+.|+|++||+|++ +|.....+++++... .+|.... ...+.||++++|.|. ++|+|+|||-.
T Consensus 54 ~~~F~P~~i~V~~GdtV~~--~N~d~~~H~v~~~~~-------~~g~~~~~s~~l~pG~t~~~tF~---~~G~y~y~C~~ 121 (132)
T 3c75_A 54 KMKYLTPEVTIKAGETVYW--VNGEVMPHNVAFKKG-------IVGEDAFRGEMMTKDQAYAITFN---EAGSYDYFCTP 121 (132)
T ss_dssp TTEESSSEEEECTTCEEEE--EECSSSCBCCEECTT-------TSSSSCEECCCBCTTEEEEEEEC---SCEEEEEECSS
T ss_pred eeEEeCCEEEECCCCEEEE--EECCCCceEEEEeCC-------CCCcccccccccCCCCEEEEEcC---CCEEEEEEeCC
Confidence 4455557999999999764 588777777776532 1222223 346899999999883 69999999987
Q ss_pred hhhhhcCeeeEEEEe
Q 009054 134 GFQKAAGGFGGIRIL 148 (545)
Q Consensus 134 ~~~~~~Gl~G~liV~ 148 (545)
|. ||.|.|+|+
T Consensus 122 H~----gM~G~I~V~ 132 (132)
T 3c75_A 122 HP----FMRGKVIVE 132 (132)
T ss_dssp CT----TCEEEEEEC
T ss_pred Cc----CCEEEEEEC
Confidence 54 999999985
No 84
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.78 E-value=6.6e-09 Score=85.38 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=58.6
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCC-C-CccCCcCCCCCeEEEEEEeCCcceeeeeecCchhhh
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDG-V-YGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQK 137 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG-v-~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~ 137 (545)
-+.|++++||+|+ ++|.....+++|+|+..... ..|. . ......+.||+++++.|. ++|+|+|||+ .+.
T Consensus 17 P~~i~v~~G~~V~--~~n~~~~~H~~~~~~~~~p~--~~~~~~~~~~~~~~~pG~~~~~tf~---~~G~y~y~C~--~H~ 87 (98)
T 2plt_A 17 PKTLTIKSGETVN--FVNNAGFPHNIVFDEDAIPS--GVNADAISRDDYLNAPGETYSVKLT---AAGEYGYYCE--PHQ 87 (98)
T ss_dssp SSEEEECTTCEEE--EEECSSCCEEEEECGGGSCT--TCCHHHHCEEEEECSTTCEEEEECC---SCEEEEEECG--GGG
T ss_pred CCEEEECCCCEEE--EEECCCCceEEEEeCCCCCC--ccccccccccceecCCCCEEEEEeC---CCeEEEEEcC--Ccc
Confidence 4689999999865 58887778999999863321 1111 0 000135899999999885 6999999999 456
Q ss_pred hcCeeeEEEEe
Q 009054 138 AAGGFGGIRIL 148 (545)
Q Consensus 138 ~~Gl~G~liV~ 148 (545)
..||.|.|+|+
T Consensus 88 ~~gM~G~i~V~ 98 (98)
T 2plt_A 88 GAGMVGKIIVQ 98 (98)
T ss_dssp GGTCEEEEEEC
T ss_pred ccCCeEEEEEC
Confidence 67999999984
No 85
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=98.71 E-value=3.4e-08 Score=79.80 Aligned_cols=76 Identities=21% Similarity=0.339 Sum_probs=56.3
Q ss_pred ccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCchhhh
Q 009054 58 FPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQK 137 (545)
Q Consensus 58 ~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~ 137 (545)
|-.+.|++++||+|+ ++|.....++++.++.. .. + .....+.||+++++.| +++|+|||||+. +.
T Consensus 16 f~P~~i~v~~Gd~V~--~~n~~~~~H~v~~~~~~----~~--~--~~~~~~~~g~~~~~~f---~~~G~y~~~C~~--H~ 80 (91)
T 1bxv_A 16 FEPSTIEIQAGDTVQ--WVNNKLAPHNVVVEGQP----EL--S--HKDLAFSPGETFEATF---SEPGTYTYYCEP--HR 80 (91)
T ss_dssp EESSEEEECTTCEEE--EEECSSCCEEEEETTCG----GG--C--EEEEECSTTCEEEEEC---CSCEEEEEECTT--TG
T ss_pred EeCCEEEECCCCEEE--EEECCCCCcEEEEeCCC----cc--C--cccceeCCCCEEEEEe---CCCEEEEEEeCC--Cc
Confidence 335689999999976 45876678899988721 00 0 0024589999998877 469999999994 45
Q ss_pred hcCeeeEEEEe
Q 009054 138 AAGGFGGIRIL 148 (545)
Q Consensus 138 ~~Gl~G~liV~ 148 (545)
..||.|.|+|+
T Consensus 81 ~~gM~g~i~V~ 91 (91)
T 1bxv_A 81 GAGMVGKIVVQ 91 (91)
T ss_dssp GGTCEEEEEEC
T ss_pred cCCCEEEEEEC
Confidence 56999999984
No 86
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=98.71 E-value=2.8e-08 Score=87.42 Aligned_cols=96 Identities=10% Similarity=0.091 Sum_probs=71.0
Q ss_pred EEecCCCcEEEEEEEc--CCCCCCceeecCC--ceEEEe-ec--cC---cCCCCCCCCCCCCCCCccceEEeCCCCEEEE
Q 009054 415 VMGADFRGFIEIVFQN--HENIVQSWHIDGY--NFWVVG-MN--GG---VWTPASRNEYNLRDAVSRCTTQVYPKSWTAI 484 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N--~~~~~HP~HlHG~--~F~Vl~-~g--~g---~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~i 484 (545)
.+.++.|++|+|++.| .+...|.||++.. ++.-+. .+ .+ .+-+.. -....+++|..|.+++...+
T Consensus 34 ~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~t~~l~pG~~~~~ 108 (140)
T 1qhq_A 34 SLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPP-----DTPNALAWTAMLNAGESGSV 108 (140)
T ss_dssp EEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCT-----TCTTEEEECCCBCTTEEEEE
T ss_pred eEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCcc-----ccccccccceeeCCCceeEE
Confidence 3678999999999999 6678999999853 221100 00 00 010000 01134678999999999999
Q ss_pred EEEeCCccceeeeecchhhhhcceEEEEEEe
Q 009054 485 YVALDNVGMWNVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 485 rf~adnpG~w~~HCHil~H~d~GMm~~~~V~ 515 (545)
.|.++.||.|.|||++..|...||...+.|.
T Consensus 109 ~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 109 TFRTPAPGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp EEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred EEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 9999999999999999999999999999885
No 87
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.69 E-value=1.1e-08 Score=84.17 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=57.2
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhc
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAA 139 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~ 139 (545)
-+.|++++||+|+ ++|.....++++.++...++ ...++.......+.||+++++.| +++|+|+|||+ .+...
T Consensus 18 P~~i~v~~G~~V~--~~n~~~~~H~~~~~~~~~pg-~~~~~~~~~~~~~~pG~~~~~tf---~~~G~y~~~C~--~H~~~ 89 (98)
T 1pcs_A 18 PSTVTIKAGEEVK--WVNNKLSPHNIVFDADGVPA-DTAAKLSHKGLLFAAGESFTSTF---TEPGTYTYYCE--PHRGA 89 (98)
T ss_dssp SSEEEECTTCEEE--EEECSSCCEEEEECCSSSCH-HHHHHHCEEEEECSTTCEEEEEC---CSCEEEEEECG--GGTTT
T ss_pred CCEEEECCCCEEE--EEECCCCCcEEEEeCCCCCc-cccccccccccccCCCCEEEEEc---CCCeEEEEEcC--Ccccc
Confidence 4689999999876 45876678999988753210 00000000023589999999988 36999999999 45668
Q ss_pred CeeeEEEEe
Q 009054 140 GGFGGIRIL 148 (545)
Q Consensus 140 Gl~G~liV~ 148 (545)
||.|.|+|+
T Consensus 90 gM~G~i~V~ 98 (98)
T 1pcs_A 90 GMVGKVVVE 98 (98)
T ss_dssp TCEEEEEEC
T ss_pred CCeEEEEEC
Confidence 999999984
No 88
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.64 E-value=3e-08 Score=81.38 Aligned_cols=79 Identities=10% Similarity=-0.060 Sum_probs=60.0
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.+.++.|++|.|+ |.+...|.+|+|+..+- +.... ...+|+..+.||+...+.| +.||.|
T Consensus 20 ~i~v~~G~~V~~~--n~~~~~H~~~~~~~~~p--g~~~~--------------~~~~~~~~~~pG~~~~~tf--~~~G~y 79 (98)
T 1pcs_A 20 TVTIKAGEEVKWV--NNKLSPHNIVFDADGVP--ADTAA--------------KLSHKGLLFAAGESFTSTF--TEPGTY 79 (98)
T ss_dssp EEEECTTCEEEEE--ECSSCCEEEEECCSSSC--HHHHH--------------HHCEEEEECSTTCEEEEEC--CSCEEE
T ss_pred EEEECCCCEEEEE--ECCCCCcEEEEeCCCCC--ccccc--------------cccccccccCCCCEEEEEc--CCCeEE
Confidence 4688999998885 77778899999875321 00000 0115788999999887766 899999
Q ss_pred eeeecchhhhhcceEEEEEEe
Q 009054 495 NVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V~ 515 (545)
.|||| .|...||+..+.|.
T Consensus 80 ~~~C~--~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 80 TYYCE--PHRGAGMVGKVVVE 98 (98)
T ss_dssp EEECG--GGTTTTCEEEEEEC
T ss_pred EEEcC--CccccCCeEEEEEC
Confidence 99999 59999999999883
No 89
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.62 E-value=8.7e-08 Score=78.44 Aligned_cols=77 Identities=17% Similarity=0.299 Sum_probs=56.2
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCc--c-CCcCCCCCeEEEEEEeCCcceeeeeecCchhh
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYG--T-TCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQ 136 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~--~-q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~ 136 (545)
-+.|+|++||+| ++.|.....++++.++... .+|..+ . ...+.||+++++.| +++|+|+|||+ .+
T Consensus 18 P~~i~v~~G~~V--~~~n~~~~~H~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~tf---~~~G~y~y~C~--~H 85 (97)
T 1b3i_A 18 PKALSISAGDTV--EFVMNKVGPHNVIFDKVPA-----GESAPALSNTKLAIAPGSFYSVTL---GTPGTYSFYCT--PH 85 (97)
T ss_dssp SSEEEECTTCEE--EEEECSSCCCCBEEEECCT-----TSCHHHHCBCCCCCSCSCCEEEEC---CSCSEEEEECS--ST
T ss_pred CCEEEECCCCEE--EEEECCCCCeEEEEeCCCC-----ccccccccccceecCCCCEEEEEe---CCCeEEEEEcc--Ch
Confidence 358999999985 5668766678888776432 122111 1 24589999999987 46999999999 45
Q ss_pred hhcCeeeEEEEe
Q 009054 137 KAAGGFGGIRIL 148 (545)
Q Consensus 137 ~~~Gl~G~liV~ 148 (545)
...||.|.|+|+
T Consensus 86 ~~~gM~G~i~V~ 97 (97)
T 1b3i_A 86 RGAGMVGTITVE 97 (97)
T ss_dssp TTTTCEEEEEEC
T ss_pred hhcCCEEEEEEC
Confidence 567999999984
No 90
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.60 E-value=1.4e-07 Score=80.60 Aligned_cols=76 Identities=11% Similarity=0.028 Sum_probs=53.5
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhc
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAA 139 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~ 139 (545)
-..|+|++||+|++.+.| .++++..+.. ..-+|.- ...+.||++++|.|. ++|+|||+|- .+...
T Consensus 20 P~~i~V~~GdtV~f~~~~---~~H~v~~~~~-----~~P~g~~--~f~~~pg~t~s~TF~---~pG~y~y~C~--~H~~~ 84 (123)
T 3erx_A 20 PAFVRAEPGDVINFVPTD---KSHNVEAIKE-----ILPEGVE--SFKSKINESYTLTVT---EPGLYGVKCT--PHFGM 84 (123)
T ss_dssp SSEEEECTTEEEEEEESS---TTCCCEECTT-----SSCTTCC--CCBCCTTCCEEEEEC---SCEEEEEECG--GGTTT
T ss_pred CCEEEECCCCEEEEEECC---CCceEEEcCC-----cCCCCcc--ceecCCCCEEEEEeC---CCeEEEEEeC--CCCcC
Confidence 368999999998777766 2344443321 1123321 134679999999884 6999999999 45668
Q ss_pred CeeeEEEEeCC
Q 009054 140 GGFGGIRILSR 150 (545)
Q Consensus 140 Gl~G~liV~~~ 150 (545)
||.|.|+|.+.
T Consensus 85 GM~G~I~V~~~ 95 (123)
T 3erx_A 85 GMVGLVQVGDA 95 (123)
T ss_dssp TCEEEEEESSS
T ss_pred CcEEEEEECCC
Confidence 99999999863
No 91
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.58 E-value=1.2e-07 Score=78.33 Aligned_cols=77 Identities=10% Similarity=0.031 Sum_probs=55.6
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCC-------CCCcc---CCcCCCCCeEEEEEEeCCcceeeee
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYED-------GVYGT---TCPIPPGKNFTYILQVKDQIGSYFY 129 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~D-------Gv~~~---q~~i~pG~~~~y~~~~~~~~Gt~wY 129 (545)
-+.|+|++||+|+ ++|.....++++.+.- ...+ ..++. ...+.||+++++.| +++|+|+|
T Consensus 16 P~~i~v~~G~tV~--~~n~~~~~H~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~tf---~~~G~y~y 85 (102)
T 1kdj_A 16 PDSITVSAGEAVE--FTLVGETGHNIVFDIP-----AGAPGTVASELKAASMDENDLLSEDEPSFKAKV---STPGTYTF 85 (102)
T ss_dssp SSEEEECTTCCEE--EEECSSSCBCCEECCC-----TTCCHHHHHHHHHTSCCTTCCBBTTBCEEEECC---CSCEEEEE
T ss_pred CCEEEECCCCEEE--EEECCCCCeEEEEeCc-----ccccccccchhhcccccccceecCCCCEEEEEe---CCCeEEEE
Confidence 4789999999976 5688666788777631 0111 00111 23589999999988 46999999
Q ss_pred ecCchhhhhcCeeeEEEEe
Q 009054 130 FPSVGFQKAAGGFGGIRIL 148 (545)
Q Consensus 130 H~H~~~~~~~Gl~G~liV~ 148 (545)
||+ .+...||.|.|+|+
T Consensus 86 ~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 86 YCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp ECS--TTGGGTCEEEEEEC
T ss_pred EeC--CCcccCCeEEEEEC
Confidence 999 66778999999984
No 92
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.57 E-value=1.4e-07 Score=77.24 Aligned_cols=80 Identities=16% Similarity=0.095 Sum_probs=60.7
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.+.++.|++|+| .|.+...|.+|+|+..+. .+ ++. ...++|+..+.||+...++| +.||.|
T Consensus 19 ~i~v~~G~~V~~--~n~~~~~H~~~~~~~~~p-----~~-~~~---------~~~~~~~~~~~pG~~~~~tf--~~~G~y 79 (98)
T 2plt_A 19 TLTIKSGETVNF--VNNAGFPHNIVFDEDAIP-----SG-VNA---------DAISRDDYLNAPGETYSVKL--TAAGEY 79 (98)
T ss_dssp EEEECTTCEEEE--EECSSCCEEEEECGGGSC-----TT-CCH---------HHHCEEEEECSTTCEEEEEC--CSCEEE
T ss_pred EEEECCCCEEEE--EECCCCceEEEEeCCCCC-----Cc-ccc---------ccccccceecCCCCEEEEEe--CCCeEE
Confidence 478999999887 688778999999974220 00 000 01246889999999887765 689999
Q ss_pred eeeecchhhhhcceEEEEEEe
Q 009054 495 NVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V~ 515 (545)
.|||| .|.+.||+..+.|.
T Consensus 80 ~y~C~--~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 80 GYYCE--PHQGAGMVGKIIVQ 98 (98)
T ss_dssp EEECG--GGGGGTCEEEEEEC
T ss_pred EEEcC--CccccCCeEEEEEC
Confidence 99999 59999999999883
No 93
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.57 E-value=2.1e-07 Score=76.41 Aligned_cols=77 Identities=17% Similarity=0.302 Sum_probs=57.3
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCC----c--c-CCcCCCCCeEEEEEEeCCcceeeeeecC
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVY----G--T-TCPIPPGKNFTYILQVKDQIGSYFYFPS 132 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~----~--~-q~~i~pG~~~~y~~~~~~~~Gt~wYH~H 132 (545)
-+.|+|++||+| +++|.....++++.++... .+|.. . . ...+.||+++++.|. ++|+|+|||+
T Consensus 16 P~~i~v~~G~tV--~~~n~~~~~H~~~~~~~~~-----p~g~~~~~~~~~~~~~~~~~G~~~~~~f~---~~G~y~~~C~ 85 (99)
T 1byp_A 16 PSDLSIASGEKI--TFKNNAGFPHNDLFDKKEV-----PAGVDVTKISMPEEDLLNAPGEEYSVTLT---EKGTYKFYCA 85 (99)
T ss_dssp SSEEEECTTEEE--EEEECSSCCBCCEECTTSS-----CTTCCHHHHSCCTTCCBCSTTCEEEEEEC---SCEEEEEECG
T ss_pred CCEEEECCCCEE--EEEECCCCcceEEEeCCCC-----ccccccccccccccceeeCCCCEEEEEeC---CCcEEEEEcC
Confidence 358999999985 5588877788888887422 12221 0 1 235799999999885 6999999999
Q ss_pred chhhhhcCeeeEEEEe
Q 009054 133 VGFQKAAGGFGGIRIL 148 (545)
Q Consensus 133 ~~~~~~~Gl~G~liV~ 148 (545)
.+...||.|.|+|+
T Consensus 86 --~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 86 --PHAGAGMVGKVTVN 99 (99)
T ss_dssp --GGTTTTCEEEEEEC
T ss_pred --CccccCCEEEEEEC
Confidence 45667999999984
No 94
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=98.57 E-value=1.4e-07 Score=76.09 Aligned_cols=72 Identities=13% Similarity=0.069 Sum_probs=57.5
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.+.++.|++|.|. |.+...|.+|+|+. . +...++..+.||+...+.| +.||.|
T Consensus 20 ~i~v~~Gd~V~~~--n~~~~~H~v~~~~~---------~--------------~~~~~~~~~~~g~~~~~~f--~~~G~y 72 (91)
T 1bxv_A 20 TIEIQAGDTVQWV--NNKLAPHNVVVEGQ---------P--------------ELSHKDLAFSPGETFEATF--SEPGTY 72 (91)
T ss_dssp EEEECTTCEEEEE--ECSSCCEEEEETTC---------G--------------GGCEEEEECSTTCEEEEEC--CSCEEE
T ss_pred EEEECCCCEEEEE--ECCCCCcEEEEeCC---------C--------------ccCcccceeCCCCEEEEEe--CCCEEE
Confidence 4678999998874 77778899999872 0 0124778899999877765 899999
Q ss_pred eeeecchhhhhcceEEEEEEe
Q 009054 495 NVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V~ 515 (545)
.|||| .|...||...+.|.
T Consensus 73 ~~~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 73 TYYCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp EEECT--TTGGGTCEEEEEEC
T ss_pred EEEeC--CCccCCCEEEEEEC
Confidence 99999 69999999999873
No 95
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.55 E-value=2.4e-07 Score=76.13 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=56.5
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCC----c--c-CCcCCCCCeEEEEEEeCCcceeeeeecC
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVY----G--T-TCPIPPGKNFTYILQVKDQIGSYFYFPS 132 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~----~--~-q~~i~pG~~~~y~~~~~~~~Gt~wYH~H 132 (545)
-+.|+|++||+|+ ++|.....++++.++.... +|.- + . ...+.||+++++.|. ++|+|+|||+
T Consensus 16 P~~i~v~~G~tV~--~~n~~~~~H~v~~~~~~~p-----~~~~~~~~~~~~~~~~~~~G~~~~~tf~---~~G~y~~~C~ 85 (99)
T 1plc_A 16 PSEFSISPGEKIV--FKNNAGFPHNIVFDEDSIP-----SGVDASKISMSEEDLLNAKGETFEVALS---NKGEYSFYCS 85 (99)
T ss_dssp SSEEEECTTCEEE--EEECSSCCBCCEECTTSSC-----TTCCHHHHCCCTTCCBCSTTCEEEEECC---SCEEEEEECG
T ss_pred CCEEEECCCCEEE--EEECCCCceEEEEeCCCCc-----ccccccccccccCccccCCCCEEEEEEC---CCceEEEEcC
Confidence 4689999999764 5888777888887764221 2211 0 1 135799999998874 6999999999
Q ss_pred chhhhhcCeeeEEEEe
Q 009054 133 VGFQKAAGGFGGIRIL 148 (545)
Q Consensus 133 ~~~~~~~Gl~G~liV~ 148 (545)
.+...||.|.|+|+
T Consensus 86 --~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 86 --PHQGAGMVGKVTVN 99 (99)
T ss_dssp --GGTTTTCEEEEEEC
T ss_pred --CCcccCCEEEEEEC
Confidence 45667999999984
No 96
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.53 E-value=1.5e-07 Score=80.71 Aligned_cols=76 Identities=16% Similarity=0.108 Sum_probs=52.9
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhc
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAA 139 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~ 139 (545)
-+.|+|++||+|.+.+.|. ++++..+... .-+|.- ...+.||++++|.|. ++|+|||||-. +...
T Consensus 22 P~~i~V~~GDtVtf~n~~~---~H~v~~~~~~-----~P~g~~--~f~s~pGet~s~TF~---~pG~y~y~C~~--H~~~ 86 (127)
T 3tu6_A 22 PAVIRAQPGDTVTFVAKDK---GHNSALMKGG-----APEGAE--TWKGKINEEITVTLS---KPGVYMYQCAP--HVGM 86 (127)
T ss_dssp SSEEEECTTCEEEEECSSS---SCCCEECTTC-----SCTTCC--CCBCCTTCCCEEECC---SCEEEEEECTT--TGGG
T ss_pred CCEEEECCCCEEEEEECCC---CceEEEccCc-----CCCCcc--ceecCCCCEEEEEeC---CCeEEEEEeCC--CCcC
Confidence 4689999999977665553 4444433210 112221 134679999888883 69999999995 4568
Q ss_pred CeeeEEEEeCC
Q 009054 140 GGFGGIRILSR 150 (545)
Q Consensus 140 Gl~G~liV~~~ 150 (545)
||.|.|+|.++
T Consensus 87 GM~G~I~V~~~ 97 (127)
T 3tu6_A 87 GMIGAIVVGEP 97 (127)
T ss_dssp TCEEEEEESSC
T ss_pred CcEEEEEECcC
Confidence 99999999874
No 97
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.52 E-value=2.5e-07 Score=78.86 Aligned_cols=76 Identities=9% Similarity=-0.045 Sum_probs=53.8
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhc
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAA 139 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~ 139 (545)
...|+|++||+|. ++|.- .++++..+... .-+|.. ...+.||++++|.|. .+|+|||||- .+...
T Consensus 21 P~~i~V~~GDTV~--f~n~~-~~Hnv~~~~~~-----~p~g~~--~~~~~pg~t~s~TF~---~~G~y~Y~C~--~H~~~ 85 (124)
T 3ef4_A 21 PGFVKVEAGDTVK--FVPTD-KSHNAESVREV-----WPEGVA--PVKGGFSKEVVFNAE---KEGLYVLKCA--PHYGM 85 (124)
T ss_dssp SSEEEECTTCEEE--EECSS-SSCCCEECTTT-----SCTTSC--CCBCCTTCCEEEECC---SSEEEEEECT--TTGGG
T ss_pred CCEEEECCCCEEE--EEECC-CCccEEEeCCc-----CCCCcc--ccccCCCCEEEEEeC---CCeEEEEEcC--CCCcC
Confidence 3689999999965 55553 56666665321 112321 234679999999884 6999999997 45667
Q ss_pred CeeeEEEEeCC
Q 009054 140 GGFGGIRILSR 150 (545)
Q Consensus 140 Gl~G~liV~~~ 150 (545)
||.|.|+|.++
T Consensus 86 GM~G~I~V~~p 96 (124)
T 3ef4_A 86 GMVVLVQVGKP 96 (124)
T ss_dssp TCEEEEEESSC
T ss_pred CCEEEEEECCC
Confidence 99999999873
No 98
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.49 E-value=8e-08 Score=78.66 Aligned_cols=78 Identities=13% Similarity=0.077 Sum_probs=58.6
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.+.++.|++|.|+ |.+...|.+++++..+. .+.. ...+++..+.||+...+.| +.||.|
T Consensus 20 ~i~v~~G~~V~~~--n~~~~~H~~~~~~~~~~---~~~~--------------~~~~~~~~~~~g~~~~~tf--~~~G~y 78 (97)
T 1b3i_A 20 ALSISAGDTVEFV--MNKVGPHNVIFDKVPAG---ESAP--------------ALSNTKLAIAPGSFYSVTL--GTPGTY 78 (97)
T ss_dssp EEEECTTCEEEEE--ECSSCCCCBEEEECCTT---SCHH--------------HHCBCCCCCSCSCCEEEEC--CSCSEE
T ss_pred EEEECCCCEEEEE--ECCCCCeEEEEeCCCCc---cccc--------------cccccceecCCCCEEEEEe--CCCeEE
Confidence 3678999998875 77777899999876541 0000 0114677788888877765 899999
Q ss_pred eeeecchhhhhcceEEEEEEe
Q 009054 495 NVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V~ 515 (545)
.|||+ .|.++||...+.|.
T Consensus 79 ~y~C~--~H~~~gM~G~i~V~ 97 (97)
T 1b3i_A 79 SFYCT--PHRGAGMVGTITVE 97 (97)
T ss_dssp EEECS--STTTTTCEEEEEEC
T ss_pred EEEcc--ChhhcCCEEEEEEC
Confidence 99999 69999999999873
No 99
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=98.43 E-value=6e-07 Score=75.54 Aligned_cols=74 Identities=15% Similarity=0.254 Sum_probs=58.1
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.+.++.|+.|+|.+.|.+...|-|++... + -+..+.||+...+.|.++.||.|
T Consensus 39 ~i~v~~G~~V~~~~~n~d~~~H~~~i~~~---------~------------------~~~~i~pG~~~~~~f~~~~~G~y 91 (112)
T 1iby_A 39 TLVVKKGDAVKVVVENKSPISEGFSIDAF---------G------------------VQEVIKAGETKTISFTADKAGAF 91 (112)
T ss_dssp EEEEETTCEEEEEEEECSSSCEEEEEGGG---------T------------------EEEEECTTCEEEEEEECCSCEEE
T ss_pred EEEEeCCCEEEEEEEECCCCeEEEEEcCC---------C------------------ceeEeCCCCEEEEEEECCCCEEE
Confidence 46789999999999999866555544321 0 25678999999999999999999
Q ss_pred eeeecchhhhhcceEEEEEEeC
Q 009054 495 NVRSEFWARQYLGQQFYLRVYS 516 (545)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V~~ 516 (545)
.||||+..|... |...+.|.+
T Consensus 92 ~~~C~~~~~~~~-M~g~i~V~~ 112 (112)
T 1iby_A 92 TIWCQLHPKNIH-LPGTLNVVE 112 (112)
T ss_dssp EEBCSSSCTTTB-CCEEEEEEC
T ss_pred EEECCCCCchHH-CEEEEEEeC
Confidence 999999665444 888888853
No 100
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.37 E-value=3.9e-07 Score=74.82 Aligned_cols=81 Identities=10% Similarity=-0.014 Sum_probs=59.4
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.+.++.|++|.| .|.+...|.+|+++..|. . + .+. .. ....+|++.+.+|+...+.| +.||.|
T Consensus 18 ~i~v~~G~tV~~--~n~~~~~H~~~~~~~~~p---~--g-~~~-----~~--~~~~~~~~~~~~G~~~~~~f--~~~G~y 80 (99)
T 1byp_A 18 DLSIASGEKITF--KNNAGFPHNDLFDKKEVP---A--G-VDV-----TK--ISMPEEDLLNAPGEEYSVTL--TEKGTY 80 (99)
T ss_dssp EEEECTTEEEEE--EECSSCCBCCEECTTSSC---T--T-CCH-----HH--HSCCTTCCBCSTTCEEEEEE--CSCEEE
T ss_pred EEEECCCCEEEE--EECCCCcceEEEeCCCCc---c--c-ccc-----cc--ccccccceeeCCCCEEEEEe--CCCcEE
Confidence 467899999887 688778999999975441 0 0 000 00 01125667888999877765 699999
Q ss_pred eeeecchhhhhcceEEEEEE
Q 009054 495 NVRSEFWARQYLGQQFYLRV 514 (545)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V 514 (545)
.|||+ .|.+.||...+.|
T Consensus 81 ~~~C~--~H~~~gM~G~i~V 98 (99)
T 1byp_A 81 KFYCA--PHAGAGMVGKVTV 98 (99)
T ss_dssp EEECG--GGTTTTCEEEEEE
T ss_pred EEEcC--CccccCCEEEEEE
Confidence 99999 5999999999987
No 101
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.34 E-value=1.5e-06 Score=71.38 Aligned_cols=72 Identities=13% Similarity=0.150 Sum_probs=59.4
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.+.++.|++|+|++.|.+...|-|.+.+..+ ...+.||+...+.|.++.||.|
T Consensus 29 ~i~v~~G~tV~~~~~n~d~~~H~~~~~~~~~---------------------------~~~~~pg~~~~~~~t~~~~G~Y 81 (100)
T 4hci_A 29 VITIPINESTTLLLKNKGKSEHTFTIKKLGI---------------------------DVVVESGKEKNITVKPKSAGTY 81 (100)
T ss_dssp EEEECTTSCEEEEEEECSSSCEEEEEGGGTE---------------------------EEEECTTCEEEEEECCCSCEEE
T ss_pred EEEECCCCEEEEEEEcCCCceEEEEEecCCc---------------------------ceeecCCcceeEEEecccCceE
Confidence 3679999999999999988888776654322 2356778889999999999999
Q ss_pred eeeecchhhhhcceEEEEEEe
Q 009054 495 NVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V~ 515 (545)
.|+|.. |...||...+.|+
T Consensus 82 ~y~C~~--H~~~gM~G~i~Ve 100 (100)
T 4hci_A 82 ELICRY--HLLKGMEGKVIVK 100 (100)
T ss_dssp EEECTT--TGGGTCEEEEEEC
T ss_pred EEECcc--ccCCCCEEEEEEC
Confidence 999975 9999999988873
No 102
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.33 E-value=7.8e-07 Score=72.89 Aligned_cols=79 Identities=18% Similarity=0.136 Sum_probs=55.4
Q ss_pred ccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCc--c---CCcCCCCCeEEEEEEeCCcceeeeeecC
Q 009054 58 FPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYG--T---TCPIPPGKNFTYILQVKDQIGSYFYFPS 132 (545)
Q Consensus 58 ~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~--~---q~~i~pG~~~~y~~~~~~~~Gt~wYH~H 132 (545)
|-.+.|+|++||+|+ ++|.....+++....-.. -+|.-. + ...+.||+++++.| +++|+|+|+|-
T Consensus 15 F~P~~i~v~~GdtV~--~~n~~~~~H~v~~~~~~~-----p~g~~~~~~~~~~~~~~~g~~~~~tf---~~~G~y~y~C~ 84 (98)
T 1iuz_A 15 FVPSKISVAAGEAIE--FVNNAGFPHNIVFDEDAV-----PAGVDADAISYDDYLNSKGETVVRKL---STPGVYGVYCE 84 (98)
T ss_dssp EESSEEEECTTCEEE--EEECSSCCEEEEECTTSS-----CTTCCHHHHCEEEEECSTTCEEEEEC---CSCEEEEEECT
T ss_pred EeCCEEEECCCCEEE--EEECCCCCEEEEEeCCCC-----ccccccccccccccccCCCCEEEEEc---CCCEEEEEEch
Confidence 334689999999955 568766777877664211 122210 0 12589999999888 36999999998
Q ss_pred chhhhhcCeeeEEEEe
Q 009054 133 VGFQKAAGGFGGIRIL 148 (545)
Q Consensus 133 ~~~~~~~Gl~G~liV~ 148 (545)
. +...||.|.|+|+
T Consensus 85 ~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 85 P--HAGAGMKMTITVQ 98 (98)
T ss_dssp T--TGGGTCEEEEEEC
T ss_pred h--hccCCCEEEEEEC
Confidence 6 4456999999984
No 103
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=98.29 E-value=4.9e-06 Score=69.12 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=54.2
Q ss_pred CcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCcc-CCcCCCCCeEEEEEEeCCcceeeeeecCch
Q 009054 56 GQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGT-TCPIPPGKNFTYILQVKDQIGSYFYFPSVG 134 (545)
Q Consensus 56 g~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~-q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~ 134 (545)
..|--..|+|++||+|+ +.|.....+++...... .|.... ...+.||+++++.| +++|+|+|+|-.|
T Consensus 29 ~~F~P~~i~V~~G~tV~--~~N~d~~~H~v~~~~~~-------~~~~~~~s~~l~~g~~~~~tf---~~~G~y~~~C~~H 96 (106)
T 1id2_A 29 MKYLTPEVTIKAGETVY--WVNGEVMPHNVAFKKGI-------VGEDAFRGEMMTKDQAYAITF---NEAGSYDYFCTPH 96 (106)
T ss_dssp TEESSSEEEECTTCEEE--EEECSSSCBCCEECTTT-------SSSSCEECCCBCTTEEEEEEE---CSCEEEEEECSSC
T ss_pred cEEeCCEEEECCCCEEE--EEECCCCcEEEEEeCCC-------CCcccccccccCCCCEEEEEe---CCCEEEEEEeCCC
Confidence 34444789999999975 45876656666554321 111112 23588999999888 3699999999875
Q ss_pred hhhhcCeeeEEEEe
Q 009054 135 FQKAAGGFGGIRIL 148 (545)
Q Consensus 135 ~~~~~Gl~G~liV~ 148 (545)
. ||.|.|+|+
T Consensus 97 ~----~M~G~I~V~ 106 (106)
T 1id2_A 97 P----FMRGKVIVE 106 (106)
T ss_dssp T----TCEEEEEEC
T ss_pred C----CCEEEEEEC
Confidence 4 999999984
No 104
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.28 E-value=2.4e-06 Score=72.93 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=50.7
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhc
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAA 139 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~ 139 (545)
-+.|+|++||+|.+ +|.-. ++++..+- ....+|... ....||++++|.|. .+|+|||+|.. +...
T Consensus 20 P~~i~V~~GdtV~f--~~~~~-~H~v~~~~-----~~~p~~~~~--~~~~pG~t~~~tF~---~~G~y~y~C~~--H~~~ 84 (123)
T 1paz_A 20 PAYIKANPGDTVTF--IPVDK-GHNVESIK-----DMIPEGAEK--FKSKINENYVLTVT---QPGAYLVKCTP--HYAM 84 (123)
T ss_dssp SSEEEECTTCEEEE--EESSS-SCCCEECT-----TCSCTTCCC--CBCCTTCCEEEECC---SCEEEEEECTT--TGGG
T ss_pred CCEEEECCCCEEEE--EECCC-CeEEEEec-----ccCCCCccc--eecCCCCEEEEEeC---CCEEEEEEeCC--cccC
Confidence 46899999999754 55533 44444431 011122211 23468999888873 69999999974 5567
Q ss_pred CeeeEEEEeCC
Q 009054 140 GGFGGIRILSR 150 (545)
Q Consensus 140 Gl~G~liV~~~ 150 (545)
||.|.|+|.++
T Consensus 85 gM~G~I~V~~~ 95 (123)
T 1paz_A 85 GMIALIAVGDS 95 (123)
T ss_dssp TCEEEEEESSS
T ss_pred CCEEEEEEcCC
Confidence 99999999873
No 105
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=98.28 E-value=1.7e-06 Score=74.44 Aligned_cols=91 Identities=14% Similarity=0.075 Sum_probs=60.0
Q ss_pred ccCceEEEecC-CEEEEEEEeCCCCC-----ce--EeeCCccC-------C-C-----CCCCCCCCcc-CCcCCCCCeEE
Q 009054 58 FPGPDIYSVTN-DNLIINVHNSLPEP-----FL--ISWNGVQQ-------R-R-----NSYEDGVYGT-TCPIPPGKNFT 115 (545)
Q Consensus 58 ~pgP~i~v~~G-d~v~v~~~N~l~~~-----~~--iH~HG~~~-------~-~-----~~~~DGv~~~-q~~i~pG~~~~ 115 (545)
|--..|.|++| |+|.|+|+|.-..+ ++ |--+|... . + -+..|.--.- ...|.||++.+
T Consensus 15 F~p~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~~~~~~~~t~~l~pGet~s 94 (129)
T 1cuo_A 15 YSTRSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPIIGGGEKTS 94 (129)
T ss_dssp CSCSEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCCBCTTCEEE
T ss_pred EccCeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhccccccccccccccceeeeeEECCCCEEE
Confidence 43458999999 99999999986432 33 22222100 0 0 0001110001 23589999999
Q ss_pred EEEEeC--CcceeeeeecCchhhhhcCeeeEEEEeC
Q 009054 116 YILQVK--DQIGSYFYFPSVGFQKAAGGFGGIRILS 149 (545)
Q Consensus 116 y~~~~~--~~~Gt~wYH~H~~~~~~~Gl~G~liV~~ 149 (545)
+.|+++ .++|+|||.|-...+.. ||.|-|+|.+
T Consensus 95 vtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~~ 129 (129)
T 1cuo_A 95 VKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLEE 129 (129)
T ss_dssp EEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEEC
T ss_pred EEEeccccCCCceEEEEeCCCCchH-cCEEEEEEeC
Confidence 999964 37999999998776666 8999999963
No 106
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=98.23 E-value=2.8e-06 Score=72.55 Aligned_cols=76 Identities=9% Similarity=-0.015 Sum_probs=51.3
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhc
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAA 139 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~ 139 (545)
-+.|+|++||+|. |+|.-. .+++..+. ....||.. ...+.||++++|.|. .+|+|+|+|.. +...
T Consensus 20 P~~i~V~~GdtV~--f~n~~~-~H~v~~~~-----~~~p~~~~--~~~~~pG~t~~~tF~---~~G~y~y~C~~--H~~~ 84 (123)
T 1pmy_A 20 PALVRLKPGDSIK--FLPTDK-GHNVETIK-----GMAPDGAD--YVKTTVGQEAVVKFD---KEGVYGFKCAP--HYMM 84 (123)
T ss_dssp SSEEEECTTCEEE--EECSSS-SCCCEECT-----TSSCTTCC--CCBCCTTSCEEEECC---SCEEEEEECST--TTTT
T ss_pred CCEEEECCCCEEE--EEECCC-CcEEEEec-----ccCCCCcc--ceecCCCCEEEEEeC---CCeEEEEEeCC--cccc
Confidence 4689999999955 556533 44444331 11112221 124579999888884 69999999985 5567
Q ss_pred CeeeEEEEeCC
Q 009054 140 GGFGGIRILSR 150 (545)
Q Consensus 140 Gl~G~liV~~~ 150 (545)
||.|.|+|.++
T Consensus 85 gM~G~I~V~~~ 95 (123)
T 1pmy_A 85 GMVALVVVGDK 95 (123)
T ss_dssp TCEEEEEESSC
T ss_pred CCEEEEEEcCC
Confidence 99999999864
No 107
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.22 E-value=1.1e-06 Score=72.48 Aligned_cols=86 Identities=8% Similarity=-0.091 Sum_probs=58.5
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccc
Q 009054 414 SVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGM 493 (545)
Q Consensus 414 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~ 493 (545)
..+.++.|++|+|+ |.+...|.++++.-... .+.+... .....+..+++.+.||+...+.| +.||.
T Consensus 17 ~~i~v~~G~tV~~~--n~~~~~H~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~pG~~~~~tf--~~~G~ 82 (102)
T 1kdj_A 17 DSITVSAGEAVEFT--LVGETGHNIVFDIPAGA-----PGTVASE-----LKAASMDENDLLSEDEPSFKAKV--STPGT 82 (102)
T ss_dssp SEEEECTTCCEEEE--ECSSSCBCCEECCCTTC-----CHHHHHH-----HHHTSCCTTCCBBTTBCEEEECC--CSCEE
T ss_pred CEEEECCCCEEEEE--ECCCCCeEEEEeCcccc-----cccccch-----hhcccccccceecCCCCEEEEEe--CCCeE
Confidence 34789999999874 77778899998831100 0000000 00001224677888999877766 89999
Q ss_pred eeeeecchhhhhcceEEEEEEe
Q 009054 494 WNVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 494 w~~HCHil~H~d~GMm~~~~V~ 515 (545)
|.|||+ .|...||...+.|.
T Consensus 83 y~y~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 83 YTFYCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp EEEECS--TTGGGTCEEEEEEC
T ss_pred EEEEeC--CCcccCCeEEEEEC
Confidence 999999 69999999999883
No 108
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=98.15 E-value=5.2e-06 Score=87.14 Aligned_cols=91 Identities=13% Similarity=0.109 Sum_probs=64.3
Q ss_pred EEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeee
Q 009054 49 QQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYF 128 (545)
Q Consensus 49 ~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~w 128 (545)
..|...+-.|-.+.|+|++||+|++.++|.....-.+ ||+.+.. -| +...+.||++.++.|+ ++++|+||
T Consensus 546 V~Mta~~~~FsP~eI~VP~GdtVrfiLTN~D~veDVi--HSF~IPs----lG---IK~DaiPGrtnsvtFt-adkPGvY~ 615 (638)
T 3sbq_A 546 VYMTSMAPAFGVQEFTVKQGDEVTVTITNIDQIEDVS--HGFVVVN----HG---VSMEISPQQTSSITFV-ADKPGLHW 615 (638)
T ss_dssp EEEEEETTEESCCEEEEETTCEEEEEEEECCCSTTCC--EEEEETT----TT---EEEEECTTCEEEEEEE-CCSCEEEE
T ss_pred EEEEEEcccccCCEEEEecCceeEEEEecCCcCCCce--eeeEecC----CC---ceeeeCCCCeEEEEEE-cCCCEEEE
Confidence 3455556667678999999999999999974211122 3332211 11 2235899999999999 57899999
Q ss_pred eecCch-hhhhcCeeeEEEEeC
Q 009054 129 YFPSVG-FQKAAGGFGGIRILS 149 (545)
Q Consensus 129 YH~H~~-~~~~~Gl~G~liV~~ 149 (545)
|||... .....+|.|.|+|++
T Consensus 616 y~CSE~CGa~Hs~M~G~ViVEP 637 (638)
T 3sbq_A 616 YYCSWFCHALHMEMVGRMMVEP 637 (638)
T ss_dssp EECCSCCSTTCTTCEEEEEEEC
T ss_pred EECCCcCCCCcccceEEEEEec
Confidence 999864 223357999999987
No 109
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=98.08 E-value=5e-06 Score=74.46 Aligned_cols=92 Identities=17% Similarity=0.103 Sum_probs=60.5
Q ss_pred cccCceEEE-ecCCEEEEEEEeCCCCC-----ce--EeeCCcc---------CC--C-CCCCCCCCcc-CCcCCCCCeEE
Q 009054 57 QFPGPDIYS-VTNDNLIINVHNSLPEP-----FL--ISWNGVQ---------QR--R-NSYEDGVYGT-TCPIPPGKNFT 115 (545)
Q Consensus 57 ~~pgP~i~v-~~Gd~v~v~~~N~l~~~-----~~--iH~HG~~---------~~--~-~~~~DGv~~~-q~~i~pG~~~~ 115 (545)
+|--..|.| +.||+|+|+|+|....+ ++ |--+|.. .. . -...|.--.- ...|.||++++
T Consensus 54 ~F~P~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~~d~~vl~~t~~l~pGet~s 133 (167)
T 3ay2_A 54 QFNTKDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPDDARVVAHTKLIGGGEESS 133 (167)
T ss_dssp CBSCSEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCTTCTTEEEECCCBCTTCEEE
T ss_pred eEecceEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhccccccccccccchhccceeeCCCCEEE
Confidence 454458999 99999999999986542 32 2222210 00 0 0001110001 23589999999
Q ss_pred EEEEeC-CcceeeeeecCchhhhhcCeeeEEEEeC
Q 009054 116 YILQVK-DQIGSYFYFPSVGFQKAAGGFGGIRILS 149 (545)
Q Consensus 116 y~~~~~-~~~Gt~wYH~H~~~~~~~Gl~G~liV~~ 149 (545)
+.|+++ .++|+|||+|-...+.. ||.|-|+|.+
T Consensus 134 vtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~~ 167 (167)
T 3ay2_A 134 LTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLVD 167 (167)
T ss_dssp EEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEEC
T ss_pred EEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEeC
Confidence 999863 26999999998776666 8999999963
No 110
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=98.06 E-value=9.7e-06 Score=69.06 Aligned_cols=74 Identities=9% Similarity=-0.034 Sum_probs=50.4
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCchhhhhc
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVGFQKAA 139 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~ 139 (545)
-+.|+|++||+|. ++|... .++++...- ..-+|.. ...+.||++++|.|. ++|+|||+|-.|..
T Consensus 20 P~~i~V~~GdtV~--f~n~d~-~H~v~~~~~-----~~p~~~~--~~~~~~g~t~~~tF~---~~G~y~y~C~~H~~--- 83 (122)
T 2ux6_A 20 PASLKVAPGDTVT--FIPTDK-GHNVETIKG-----MIPDGAE--AFKSKINENYKVTFT---APGVYGVKCTPHPF--- 83 (122)
T ss_dssp SSEEEECTTEEEE--EEESSS-SCCCEECTT-----CSCTTCC--CCBCCTTCCEEEEEC---SCEEEEEEETTEEE---
T ss_pred CCEEEECCCCEEE--EEECCC-CcEEEEccc-----ccCCCcc--eeecCCCCEEEEEeC---CCEEEEEEeCCCcc---
Confidence 4689999999865 456543 455444321 1112221 134578999998884 68999999988644
Q ss_pred CeeeEEEEeCC
Q 009054 140 GGFGGIRILSR 150 (545)
Q Consensus 140 Gl~G~liV~~~ 150 (545)
|.|.|+|.+.
T Consensus 84 -M~G~I~V~~~ 93 (122)
T 2ux6_A 84 -MVGVVQVGDA 93 (122)
T ss_dssp -EEEEEEESSS
T ss_pred -CEEEEEEeCC
Confidence 9999999873
No 111
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.00 E-value=2e-05 Score=64.39 Aligned_cols=82 Identities=12% Similarity=-0.026 Sum_probs=58.5
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccc
Q 009054 414 SVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGM 493 (545)
Q Consensus 414 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~ 493 (545)
..+.++.|++|.| .|.+...|.++++...+. .+ .+. .. ....++.+.+.||+...+.| +.||.
T Consensus 17 ~~i~v~~G~tV~~--~n~~~~~H~v~~~~~~~p---~~---~~~-----~~--~~~~~~~~~~~~G~~~~~tf--~~~G~ 79 (99)
T 1plc_A 17 SEFSISPGEKIVF--KNNAGFPHNIVFDEDSIP---SG---VDA-----SK--ISMSEEDLLNAKGETFEVAL--SNKGE 79 (99)
T ss_dssp SEEEECTTCEEEE--EECSSCCBCCEECTTSSC---TT---CCH-----HH--HCCCTTCCBCSTTCEEEEEC--CSCEE
T ss_pred CEEEECCCCEEEE--EECCCCceEEEEeCCCCc---cc---ccc-----cc--cccccCccccCCCCEEEEEE--CCCce
Confidence 3578999999887 788778999999875330 00 000 00 00123556788898877755 69999
Q ss_pred eeeeecchhhhhcceEEEEEE
Q 009054 494 WNVRSEFWARQYLGQQFYLRV 514 (545)
Q Consensus 494 w~~HCHil~H~d~GMm~~~~V 514 (545)
|.|||+ .|..+||...+.|
T Consensus 80 y~~~C~--~H~~~gM~G~i~V 98 (99)
T 1plc_A 80 YSFYCS--PHQGAGMVGKVTV 98 (99)
T ss_dssp EEEECG--GGTTTTCEEEEEE
T ss_pred EEEEcC--CCcccCCEEEEEE
Confidence 999999 5999999999987
No 112
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=97.96 E-value=1.4e-05 Score=68.62 Aligned_cols=91 Identities=16% Similarity=0.073 Sum_probs=58.2
Q ss_pred cccCceEEE-ecCCEEEEEEEeCCCCC-----ceEe--eCCccC-------------CCCCCCCCCCcc-CCcCCCCCeE
Q 009054 57 QFPGPDIYS-VTNDNLIINVHNSLPEP-----FLIS--WNGVQQ-------------RRNSYEDGVYGT-TCPIPPGKNF 114 (545)
Q Consensus 57 ~~pgP~i~v-~~Gd~v~v~~~N~l~~~-----~~iH--~HG~~~-------------~~~~~~DGv~~~-q~~i~pG~~~ 114 (545)
+|--..|.| ++||+|.|+|+|....+ +++- -+|..+ .--+..|.--.- ...|.||++.
T Consensus 14 ~F~p~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pGet~ 93 (129)
T 2ccw_A 14 QYNVKEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIGGGESD 93 (129)
T ss_dssp CBSCSEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEE
T ss_pred cEecceEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccccccccccceeeeeEECCCCEE
Confidence 343458999 99999999999986542 3322 222100 000011110001 2358999999
Q ss_pred EEEEEeC-Cccee-eeeecCchhhhhcCeeeEEEEe
Q 009054 115 TYILQVK-DQIGS-YFYFPSVGFQKAAGGFGGIRIL 148 (545)
Q Consensus 115 ~y~~~~~-~~~Gt-~wYH~H~~~~~~~Gl~G~liV~ 148 (545)
+..|+++ -++|+ |||.|-...+.. ||.|-|+|.
T Consensus 94 svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 94 SVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp EEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred EEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 9999963 04655 999998776666 899999996
No 113
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=97.93 E-value=4.9e-05 Score=65.12 Aligned_cols=91 Identities=15% Similarity=0.075 Sum_probs=58.8
Q ss_pred cccCceEEE-ecCCEEEEEEEeCCCCC-----ceEee--CCcc-------CCCCCCCCCC----C-cc--CCcCCCCCeE
Q 009054 57 QFPGPDIYS-VTNDNLIINVHNSLPEP-----FLISW--NGVQ-------QRRNSYEDGV----Y-GT--TCPIPPGKNF 114 (545)
Q Consensus 57 ~~pgP~i~v-~~Gd~v~v~~~N~l~~~-----~~iH~--HG~~-------~~~~~~~DGv----~-~~--q~~i~pG~~~ 114 (545)
+|--..|.| ++||+|+|+|+|....+ +++-. .|.. +.....++=+ + .+ ...|.||++.
T Consensus 14 ~F~p~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~pGet~ 93 (128)
T 1nwp_A 14 SFNTKDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDARVIAHTKVIGAGEKD 93 (128)
T ss_dssp CBSCSEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTTEEEECCCBCTTCEE
T ss_pred cEecCEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccccccccchhheeeeeeCCCCEE
Confidence 344457999 99999999999986442 43322 2210 0000011101 1 11 2358999999
Q ss_pred EEEEEeC-Cccee-eeeecCchhhhhcCeeeEEEEe
Q 009054 115 TYILQVK-DQIGS-YFYFPSVGFQKAAGGFGGIRIL 148 (545)
Q Consensus 115 ~y~~~~~-~~~Gt-~wYH~H~~~~~~~Gl~G~liV~ 148 (545)
++.|+++ -++|+ |||.|-...+.. ||.|-|+|.
T Consensus 94 svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 94 SVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp EEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred EEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 9999963 14776 999998877776 899999984
No 114
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=97.92 E-value=5.5e-05 Score=64.79 Aligned_cols=91 Identities=20% Similarity=0.127 Sum_probs=59.2
Q ss_pred cccCceEEE-ecCCEEEEEEEeCCCCC-----ceEee--CC---------cc----CCCCCCCCCCCcc-CCcCCCCCeE
Q 009054 57 QFPGPDIYS-VTNDNLIINVHNSLPEP-----FLISW--NG---------VQ----QRRNSYEDGVYGT-TCPIPPGKNF 114 (545)
Q Consensus 57 ~~pgP~i~v-~~Gd~v~v~~~N~l~~~-----~~iH~--HG---------~~----~~~~~~~DGv~~~-q~~i~pG~~~ 114 (545)
+|--.+|.| +.|++|+|+|+|.-..+ +++-+ .+ +. ..--+..|.--.- ...|.||+++
T Consensus 13 ~F~p~~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~pGes~ 92 (128)
T 2iaa_C 13 QFNTKSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVIGGGETD 92 (128)
T ss_dssp CBSCSEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEE
T ss_pred eEecCEEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceeeCCCCEE
Confidence 344458999 99999999999987543 43322 11 00 0000011110001 2358999999
Q ss_pred EEEEEeC-Cccee-eeeecCchhhhhcCeeeEEEEe
Q 009054 115 TYILQVK-DQIGS-YFYFPSVGFQKAAGGFGGIRIL 148 (545)
Q Consensus 115 ~y~~~~~-~~~Gt-~wYH~H~~~~~~~Gl~G~liV~ 148 (545)
++.|+++ -++|+ |+|.|-...+.. ||.|-|+|.
T Consensus 93 ~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 93 SVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp EEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred EEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 9999963 15885 999998877766 899999996
No 115
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.87 E-value=2.9e-05 Score=64.23 Aligned_cols=71 Identities=8% Similarity=-0.019 Sum_probs=50.6
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.+.++.|++|+| .|.+...|-+|+|... .|. ..+ ++-.+.||+...+.| +.||.|
T Consensus 34 ~i~v~~Gd~V~~--~N~d~~~H~v~~~~~~-------~g~------~~~--------~~~~~~pG~~~~~tf--~~~G~y 88 (105)
T 2ov0_A 34 ELHVKVGDTVTW--INREAMPHNVHFVAGV-------LGE------AAL--------KGPMMKKEQAYSLTF--TEAGTY 88 (105)
T ss_dssp EEEECTTCEEEE--EECSSSCBCCEECTTT-------SSS------SCE--------ECCCBCTTEEEEEEE--CSCEEE
T ss_pred EEEECCCCEEEE--EECCCCCEEEEEcCCC-------CCc------ccc--------cccccCCCCEEEEEe--CCCEEE
Confidence 467899999888 4887788999988522 110 001 222367888666555 899999
Q ss_pred eeeecchhhhhcceEEEEEE
Q 009054 495 NVRSEFWARQYLGQQFYLRV 514 (545)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V 514 (545)
.|||++ |. ||...+.|
T Consensus 89 ~y~C~~--H~--gM~G~i~V 104 (105)
T 2ov0_A 89 DYHCTP--HP--FMRGKVVV 104 (105)
T ss_dssp EEECSS--CT--TCEEEEEE
T ss_pred EEEeCC--CC--CCEEEEEE
Confidence 999998 55 99888877
No 116
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=97.86 E-value=2.6e-05 Score=69.27 Aligned_cols=83 Identities=11% Similarity=0.031 Sum_probs=59.8
Q ss_pred eEEecCCCcEEEEEEEcCC-CCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccce-------EEeCCCC--EEE
Q 009054 414 SVMGADFRGFIEIVFQNHE-NIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCT-------TQVYPKS--WTA 483 (545)
Q Consensus 414 ~~~~~~~g~~v~~~i~N~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDT-------v~vp~~~--~v~ 483 (545)
+.+.++.|++|.+++.|.+ ...|-|-++.. +. .+.. .|...+. ..|.||+ ...
T Consensus 61 p~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~-------~~-~~~~---------~~~~~~~~~~~~~~~~i~PG~sgt~t 123 (154)
T 2cal_A 61 PTLEIPAGATVDVTFINTNKGFGHSFDITKK-------GP-PYAV---------MPVIDPIVAGTGFSPVPKDGKFGYTD 123 (154)
T ss_dssp CEEEECTTCEEEEEEEECCTTCCCCCEEESC-------CS-CCCS---------SCCCCSEEEEBCCCCCCBTTBEEEEE
T ss_pred CEEEEeCCCEEEEEEEcCCCCeeeEEEEeec-------Cc-chhc---------cccccccccccccccccCCCCceEEE
Confidence 3588999999999999974 55566555521 11 1100 0011111 2567888 899
Q ss_pred EEEEeCCccceeeeecchhhhhcceEEEEEE
Q 009054 484 IYVALDNVGMWNVRSEFWARQYLGQQFYLRV 514 (545)
Q Consensus 484 irf~adnpG~w~~HCHil~H~d~GMm~~~~V 514 (545)
+.|++ .||.|.||||+--|...||-..+.|
T Consensus 124 ~tft~-~pGtY~y~C~~~gH~~~GM~G~IiV 153 (154)
T 2cal_A 124 FTWHP-TAGTYYYVCQIPGMAATGMFGKIVV 153 (154)
T ss_dssp EEECC-CSEEEEEECCSTTTGGGTCEEEEEE
T ss_pred EEEEE-CCceEEEECCCCCHHHCCCEEEEEE
Confidence 99999 9999999999989999999999887
No 117
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.80 E-value=5.3e-05 Score=81.19 Aligned_cols=74 Identities=8% Similarity=0.161 Sum_probs=60.3
Q ss_pred EEecCCCcEEEEEEEcCC---CCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCc
Q 009054 415 VMGADFRGFIEIVFQNHE---NIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNV 491 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~---~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnp 491 (545)
.+.++.|+.|+|.+.|.+ +..|.|+++++.+. ..+.||+...++|+++.|
T Consensus 514 ~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~~gv~---------------------------~~i~PG~t~t~~Fta~~p 566 (595)
T 1fwx_A 514 SFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNYGVA---------------------------MEIGPQMTSSVTFVAANP 566 (595)
T ss_dssp EEEEETTCEEEEEEEECCCSTTCCEEEEETTTTEE---------------------------EEECTTCEEEEEEECCSC
T ss_pred EEEEECCCEEEEEEEeCCCCCCceeeEEecCCCcc---------------------------eeeCCCCeEEEEEECCCC
Confidence 477999999999999964 34799988875321 467789999999999999
Q ss_pred cceeeeecc---hhhhhcceEEEEEEeCC
Q 009054 492 GMWNVRSEF---WARQYLGQQFYLRVYSP 517 (545)
Q Consensus 492 G~w~~HCHi---l~H~d~GMm~~~~V~~~ 517 (545)
|.|.||||. ..| .||...+.|.++
T Consensus 567 GtY~yhC~e~Cg~~H--~gM~G~IiV~p~ 593 (595)
T 1fwx_A 567 GVYWYYCQWFCHALH--MEMRGRMLVEPK 593 (595)
T ss_dssp EEEEEECCSCCSTTC--TTCEEEEEEECC
T ss_pred EEEEEECCCCCCCCc--cCCEEEEEEEcC
Confidence 999999993 345 499999999765
No 118
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=97.27 E-value=0.0015 Score=55.17 Aligned_cols=87 Identities=15% Similarity=0.140 Sum_probs=54.2
Q ss_pred ccCceEEEec-CCEEEEEEEeCCCCC-----ceEee-----------CCccCCC----CCCCCCCCcc-CCcCCCCCeEE
Q 009054 58 FPGPDIYSVT-NDNLIINVHNSLPEP-----FLISW-----------NGVQQRR----NSYEDGVYGT-TCPIPPGKNFT 115 (545)
Q Consensus 58 ~pgP~i~v~~-Gd~v~v~~~N~l~~~-----~~iH~-----------HG~~~~~----~~~~DGv~~~-q~~i~pG~~~~ 115 (545)
|--..|.|++ |++|+|+|+|....+ +++=. -|+.... -+..|..-.. ...|.||++++
T Consensus 15 F~p~~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~~via~t~~l~pGes~~ 94 (125)
T 3fsa_A 15 FNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDS 94 (125)
T ss_dssp BSCSEEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCEECCCBCTTCEEE
T ss_pred EecCEEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCccceeccceeCCCcEEE
Confidence 4456899986 999999999997442 32111 1111000 0011111111 33589999999
Q ss_pred EEEEeC--CcceeeeeecCchhhhhcCeeeEEEEe
Q 009054 116 YILQVK--DQIGSYFYFPSVGFQKAAGGFGGIRIL 148 (545)
Q Consensus 116 y~~~~~--~~~Gt~wYH~H~~~~~~~Gl~G~liV~ 148 (545)
..|+.+ .++|+|.|.|. .+. ||.|-++|.
T Consensus 95 vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 95 VTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp EEEEGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred EEEeCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 999975 26999999999 444 899999983
No 119
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=97.08 E-value=0.001 Score=56.41 Aligned_cols=75 Identities=11% Similarity=0.142 Sum_probs=50.8
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.+.++.|++|+|+ |.+ ..|-+..+.. .+... .+.+.+.+++...+.| +.||.|
T Consensus 23 ~i~V~~GDTV~f~--n~~-~~Hnv~~~~~----------~~p~g------------~~~~~~~pg~t~s~TF--~~~G~y 75 (124)
T 3ef4_A 23 FVKVEAGDTVKFV--PTD-KSHNAESVRE----------VWPEG------------VAPVKGGFSKEVVFNA--EKEGLY 75 (124)
T ss_dssp EEEECTTCEEEEE--CSS-SSCCCEECTT----------TSCTT------------SCCCBCCTTCCEEEEC--CSSEEE
T ss_pred EEEECCCCEEEEE--ECC-CCccEEEeCC----------cCCCC------------ccccccCCCCEEEEEe--CCCeEE
Confidence 4789999999996 443 5676665421 11100 0122345677655554 899999
Q ss_pred eeeecchhhhhcceEEEEEEeCCC
Q 009054 495 NVRSEFWARQYLGQQFYLRVYSPV 518 (545)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V~~~~ 518 (545)
.|||- .|..+||...+.|.+|.
T Consensus 76 ~Y~C~--~H~~~GM~G~I~V~~p~ 97 (124)
T 3ef4_A 76 VLKCA--PHYGMGMVVLVQVGKPV 97 (124)
T ss_dssp EEECT--TTGGGTCEEEEEESSCT
T ss_pred EEEcC--CCCcCCCEEEEEECCCC
Confidence 99996 59999999999998764
No 120
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.06 E-value=0.0014 Score=54.04 Aligned_cols=71 Identities=11% Similarity=-0.045 Sum_probs=49.2
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.+.++.|++|.|+ |.+...|-+++....- + . . ..++-.+.+|+...+.| +.||.|
T Consensus 35 ~i~V~~G~tV~~~--N~d~~~H~v~~~~~~~-------~----~--~--------~~~s~~l~~g~~~~~tf--~~~G~y 89 (106)
T 1id2_A 35 EVTIKAGETVYWV--NGEVMPHNVAFKKGIV-------G----E--D--------AFRGEMMTKDQAYAITF--NEAGSY 89 (106)
T ss_dssp EEEECTTCEEEEE--ECSSSCBCCEECTTTS-------S----S--S--------CEECCCBCTTEEEEEEE--CSCEEE
T ss_pred EEEECCCCEEEEE--ECCCCcEEEEEeCCCC-------C----c--c--------cccccccCCCCEEEEEe--CCCEEE
Confidence 4678999999885 7776778776653210 0 0 0 01333467788776665 899999
Q ss_pred eeeecchhhhhcceEEEEEE
Q 009054 495 NVRSEFWARQYLGQQFYLRV 514 (545)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V 514 (545)
.|+|-+ |. ||...+.|
T Consensus 90 ~~~C~~--H~--~M~G~I~V 105 (106)
T 1id2_A 90 DYFCTP--HP--FMRGKVIV 105 (106)
T ss_dssp EEECSS--CT--TCEEEEEE
T ss_pred EEEeCC--CC--CCEEEEEE
Confidence 999987 65 99988877
No 121
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=97.02 E-value=0.0009 Score=57.08 Aligned_cols=75 Identities=15% Similarity=0.036 Sum_probs=49.1
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.+.++.|++|.|++.|. .|-+..+.. .+ +... ..+.+.|++... ++++.||.|
T Consensus 24 ~i~V~~GDtVtf~n~~~---~H~v~~~~~----------~~-P~g~-----------~~f~s~pGet~s--~TF~~pG~y 76 (127)
T 3tu6_A 24 VIRAQPGDTVTFVAKDK---GHNSALMKG----------GA-PEGA-----------ETWKGKINEEIT--VTLSKPGVY 76 (127)
T ss_dssp EEEECTTCEEEEECSSS---SCCCEECTT----------CS-CTTC-----------CCCBCCTTCCCE--EECCSCEEE
T ss_pred EEEECCCCEEEEEECCC---CceEEEccC----------cC-CCCc-----------cceecCCCCEEE--EEeCCCeEE
Confidence 47899999999966653 354444321 01 1100 111224677544 445899999
Q ss_pred eeeecchhhhhcceEEEEEEeCCC
Q 009054 495 NVRSEFWARQYLGQQFYLRVYSPV 518 (545)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V~~~~ 518 (545)
.|||- .|...||-..+.|.++.
T Consensus 77 ~y~C~--~H~~~GM~G~I~V~~~~ 98 (127)
T 3tu6_A 77 MYQCA--PHVGMGMIGAIVVGEPA 98 (127)
T ss_dssp EEECT--TTGGGTCEEEEEESSCT
T ss_pred EEEeC--CCCcCCcEEEEEECcCC
Confidence 99999 49999999999998754
No 122
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=97.02 E-value=0.0023 Score=51.80 Aligned_cols=80 Identities=19% Similarity=0.111 Sum_probs=54.5
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccc
Q 009054 414 SVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGM 493 (545)
Q Consensus 414 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~ 493 (545)
..+.++.|++|.|+ |.+...|-+.+.... +. . .++. .....+...+.+|+...+.| +.||.
T Consensus 18 ~~i~v~~GdtV~~~--n~~~~~H~v~~~~~~----------~p-~---g~~~-~~~~~~~~~~~~g~~~~~tf--~~~G~ 78 (98)
T 1iuz_A 18 SKISVAAGEAIEFV--NNAGFPHNIVFDEDA----------VP-A---GVDA-DAISYDDYLNSKGETVVRKL--STPGV 78 (98)
T ss_dssp SEEEECTTCEEEEE--ECSSCCEEEEECTTS----------SC-T---TCCH-HHHCEEEEECSTTCEEEEEC--CSCEE
T ss_pred CEEEECCCCEEEEE--ECCCCCEEEEEeCCC----------Cc-c---cccc-ccccccccccCCCCEEEEEc--CCCEE
Confidence 35789999998884 776677876655311 10 0 0000 00113446788899777765 89999
Q ss_pred eeeeecchhhhhcceEEEEEE
Q 009054 494 WNVRSEFWARQYLGQQFYLRV 514 (545)
Q Consensus 494 w~~HCHil~H~d~GMm~~~~V 514 (545)
|.|+|-+ |..+||-..+.|
T Consensus 79 y~y~C~~--H~~~gM~G~I~V 97 (98)
T 1iuz_A 79 YGVYCEP--HAGAGMKMTITV 97 (98)
T ss_dssp EEEECTT--TGGGTCEEEEEE
T ss_pred EEEEchh--hccCCCEEEEEE
Confidence 9999986 988899998887
No 123
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=96.91 E-value=0.0021 Score=55.31 Aligned_cols=71 Identities=11% Similarity=-0.086 Sum_probs=50.0
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.+.++.|++|+|+ |.+...|-+++.... .|. .. -++-.+.+|+...+.| +.||.|
T Consensus 61 ~i~V~~GdtV~~~--N~d~~~H~v~~~~~~-------~g~-------------~~-~~s~~l~pG~t~~~tF--~~~G~y 115 (132)
T 3c75_A 61 EVTIKAGETVYWV--NGEVMPHNVAFKKGI-------VGE-------------DA-FRGEMMTKDQAYAITF--NEAGSY 115 (132)
T ss_dssp EEEECTTCEEEEE--ECSSSCBCCEECTTT-------SSS-------------SC-EECCCBCTTEEEEEEE--CSCEEE
T ss_pred EEEECCCCEEEEE--ECCCCceEEEEeCCC-------CCc-------------cc-ccccccCCCCEEEEEc--CCCEEE
Confidence 4678999999885 877778877765321 000 00 1333567888777665 799999
Q ss_pred eeeecchhhhhcceEEEEEE
Q 009054 495 NVRSEFWARQYLGQQFYLRV 514 (545)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V 514 (545)
.|||-+ |. ||...+.|
T Consensus 116 ~y~C~~--H~--gM~G~I~V 131 (132)
T 3c75_A 116 DYFCTP--HP--FMRGKVIV 131 (132)
T ss_dssp EEECSS--CT--TCEEEEEE
T ss_pred EEEeCC--Cc--CCEEEEEE
Confidence 999987 65 99998887
No 124
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=96.84 E-value=0.008 Score=51.77 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=53.0
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCch-hhhhc
Q 009054 61 PDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVG-FQKAA 139 (545)
Q Consensus 61 P~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~~~~~ 139 (545)
..|.++.|++|++.++|. +.. |++.... -| +..-+.||+..++.|+ .+++|+|+|+|..- .....
T Consensus 60 ~~l~Vp~G~~V~~~vts~-DV~-----Hsf~ip~----~~---~k~d~~PG~~~~~~~~-~~~~G~y~~~C~e~CG~~H~ 125 (135)
T 2cua_A 60 NPIEVPQGAEIVFKITSP-DVI-----HGFHVEG----TN---INVEVLPGEVSTVRYT-FKRPGEYRIICNQYCGLGHQ 125 (135)
T ss_dssp SSEEEETTSEEEEEEEBS-SSC-----EEEEETT----SS---CEEEECBTBCEEEEEE-CCSCEEEEEECCSCCSTTST
T ss_pred CEEEEcCCCEEEEEEEeC-Ccc-----ceEEecC----CC---ceeEeCCCCcEEEEEE-cCCCEEEEEECcccCCCCcC
Confidence 479999999999999997 333 3433221 11 1234689999999999 47899999999542 11225
Q ss_pred CeeeEEEEeC
Q 009054 140 GGFGGIRILS 149 (545)
Q Consensus 140 Gl~G~liV~~ 149 (545)
+|.|.++|.+
T Consensus 126 ~M~g~v~V~~ 135 (135)
T 2cua_A 126 NMFGTIVVKE 135 (135)
T ss_dssp TCEEEEEEEC
T ss_pred CCEEEEEEEC
Confidence 8999998863
No 125
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=96.84 E-value=0.003 Score=53.55 Aligned_cols=73 Identities=12% Similarity=0.091 Sum_probs=49.4
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.+.++.|++|.|++.|. .|-+..+.. .+ +... +.+.+.|++...+.| +.||.|
T Consensus 22 ~i~V~~GdtV~f~~~~~---~H~v~~~~~----------~~-P~g~-----------~~f~~~pg~t~s~TF--~~pG~y 74 (123)
T 3erx_A 22 FVRAEPGDVINFVPTDK---SHNVEAIKE----------IL-PEGV-----------ESFKSKINESYTLTV--TEPGLY 74 (123)
T ss_dssp EEEECTTEEEEEEESST---TCCCEECTT----------SS-CTTC-----------CCCBCCTTCCEEEEE--CSCEEE
T ss_pred EEEECCCCEEEEEECCC---CceEEEcCC----------cC-CCCc-----------cceecCCCCEEEEEe--CCCeEE
Confidence 47899999999987763 355544321 01 1100 112234677555555 899999
Q ss_pred eeeecchhhhhcceEEEEEEeC
Q 009054 495 NVRSEFWARQYLGQQFYLRVYS 516 (545)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V~~ 516 (545)
.|+|- .|...||-..+.|.+
T Consensus 75 ~y~C~--~H~~~GM~G~I~V~~ 94 (123)
T 3erx_A 75 GVKCT--PHFGMGMVGLVQVGD 94 (123)
T ss_dssp EEECG--GGTTTTCEEEEEESS
T ss_pred EEEeC--CCCcCCcEEEEEECC
Confidence 99999 599999999999986
No 126
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=96.46 E-value=0.019 Score=51.14 Aligned_cols=84 Identities=12% Similarity=0.100 Sum_probs=58.8
Q ss_pred EEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeec
Q 009054 52 ILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFP 131 (545)
Q Consensus 52 ~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~ 131 (545)
...+-+|--..|+++.|++|++.++|. +-- |+..++. . +++.-+.||+..++.|+ ++++|+|++.|
T Consensus 84 ~a~~~~f~Pn~l~VP~G~~Vr~~vTS~-DVi-----Hsf~IP~---l----gik~da~PG~~n~~~~~-~~kpG~y~g~C 149 (168)
T 3s8f_B 84 LAFAFGYQPNPIEVPQGAEIVFKITSP-DVI-----HGFHVEG---T----NINVEVLPGEVSTVRYT-FKRPGEYRIIC 149 (168)
T ss_dssp EEETTEEESSSEEEETTSEEEEEEECS-SSC-----EEEEETT---S----SCEEEECTTBCEEEEEE-CCSCEEEEEEC
T ss_pred EEEeceEecCEEEEeCCCeEEEEEecC-Cce-----EEEEECC---C----CeEEEecCCceeEEEEE-eCCCEEEEEEC
Confidence 333444434579999999999999997 333 3333221 1 12234679999999999 57899999999
Q ss_pred Cch-hhhhcCeeeEEEEeC
Q 009054 132 SVG-FQKAAGGFGGIRILS 149 (545)
Q Consensus 132 H~~-~~~~~Gl~G~liV~~ 149 (545)
..- .....+|.|-++|++
T Consensus 150 se~CG~~Hs~M~g~V~V~e 168 (168)
T 3s8f_B 150 NQYCGLGHQNMFGTIVVKE 168 (168)
T ss_dssp CSCCSTTGGGCEEEEEEEC
T ss_pred CcCCCCCcCCCEEEEEEeC
Confidence 842 445567999999873
No 127
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=96.34 E-value=0.009 Score=50.56 Aligned_cols=74 Identities=8% Similarity=0.022 Sum_probs=47.2
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.+.++.|++|.|+..+. .|-+.++- + ..+.... .+.+.+|+... ++++.||.|
T Consensus 22 ~i~V~~GdtV~f~~~~~---~H~v~~~~----------~-~~p~~~~-----------~~~~~pG~t~~--~tF~~~G~y 74 (123)
T 1paz_A 22 YIKANPGDTVTFIPVDK---GHNVESIK----------D-MIPEGAE-----------KFKSKINENYV--LTVTQPGAY 74 (123)
T ss_dssp EEEECTTCEEEEEESSS---SCCCEECT----------T-CSCTTCC-----------CCBCCTTCCEE--EECCSCEEE
T ss_pred EEEECCCCEEEEEECCC---CeEEEEec----------c-cCCCCcc-----------ceecCCCCEEE--EEeCCCEEE
Confidence 46789999998865542 35554431 1 0011000 01124677544 455899999
Q ss_pred eeeecchhhhhcceEEEEEEeCC
Q 009054 495 NVRSEFWARQYLGQQFYLRVYSP 517 (545)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V~~~ 517 (545)
.|+|-. |...||-..+.|.++
T Consensus 75 ~y~C~~--H~~~gM~G~I~V~~~ 95 (123)
T 1paz_A 75 LVKCTP--HYAMGMIALIAVGDS 95 (123)
T ss_dssp EEECTT--TGGGTCEEEEEESSS
T ss_pred EEEeCC--cccCCCEEEEEEcCC
Confidence 999974 999999999999863
No 128
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.31 E-value=0.012 Score=62.13 Aligned_cols=76 Identities=8% Similarity=0.112 Sum_probs=59.8
Q ss_pred eEEecCCCcEEEEEEEcCC---CCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCC
Q 009054 414 SVMGADFRGFIEIVFQNHE---NIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDN 490 (545)
Q Consensus 414 ~~~~~~~g~~v~~~i~N~~---~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adn 490 (545)
..+.++.|+.|+|++.|.+ +..|-|-+.+.... +.+.||....+.|+++.
T Consensus 558 ~eI~VP~GdtVrfiLTN~D~veDViHSF~IPslGIK---------------------------~DaiPGrtnsvtFtadk 610 (638)
T 3sbq_A 558 QEFTVKQGDEVTVTITNIDQIEDVSHGFVVVNHGVS---------------------------MEISPQQTSSITFVADK 610 (638)
T ss_dssp CEEEEETTCEEEEEEEECCCSTTCCEEEEETTTTEE---------------------------EEECTTCEEEEEEECCS
T ss_pred CEEEEecCceeEEEEecCCcCCCceeeeEecCCCce---------------------------eeeCCCCeEEEEEEcCC
Confidence 3577999999999999974 57787776654221 35677889999999999
Q ss_pred ccceeeeecchhhh-hcceEEEEEEeC
Q 009054 491 VGMWNVRSEFWARQ-YLGQQFYLRVYS 516 (545)
Q Consensus 491 pG~w~~HCHil~H~-d~GMm~~~~V~~ 516 (545)
||.|.+||...-|. |.+|...+.|++
T Consensus 611 PGvY~y~CSE~CGa~Hs~M~G~ViVEP 637 (638)
T 3sbq_A 611 PGLHWYYCSWFCHALHMEMVGRMMVEP 637 (638)
T ss_dssp CEEEEEECCSCCSTTCTTCEEEEEEEC
T ss_pred CEEEEEECCCcCCCCcccceEEEEEec
Confidence 99999999976553 578999988863
No 129
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=96.14 E-value=0.01 Score=50.28 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=30.3
Q ss_pred eCCCCEEEEEEEeCCccceeeeecchhhhhcceEEEEEEeCC
Q 009054 476 VYPKSWTAIYVALDNVGMWNVRSEFWARQYLGQQFYLRVYSP 517 (545)
Q Consensus 476 vp~~~~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~ 517 (545)
+.+|+... ++++.||.|.|+|-. |...||-..+.|.++
T Consensus 58 ~~pG~t~~--~tF~~~G~y~y~C~~--H~~~gM~G~I~V~~~ 95 (123)
T 1pmy_A 58 TTVGQEAV--VKFDKEGVYGFKCAP--HYMMGMVALVVVGDK 95 (123)
T ss_dssp CCTTSCEE--EECCSCEEEEEECST--TTTTTCEEEEEESSC
T ss_pred cCCCCEEE--EEeCCCeEEEEEeCC--ccccCCEEEEEEcCC
Confidence 34677544 445889999999984 999999999999763
No 130
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=95.53 E-value=0.028 Score=50.09 Aligned_cols=90 Identities=8% Similarity=0.020 Sum_probs=59.4
Q ss_pred Eec-CCCcEEEEEEEcCCCCC-----CceeecCCceEEEeeccCcCCCC-------CCCCC-CCCC-CCccceEEeCCCC
Q 009054 416 MGA-DFRGFIEIVFQNHENIV-----QSWHIDGYNFWVVGMNGGVWTPA-------SRNEY-NLRD-AVSRCTTQVYPKS 480 (545)
Q Consensus 416 ~~~-~~g~~v~~~i~N~~~~~-----HP~HlHG~~F~Vl~~g~g~~~~~-------~~~~~-~~~~-p~~rDTv~vp~~~ 480 (545)
+.+ +.|+.|.|+|.|.+... |- |-+...+. +..- ...++ ...+ -....|..|.||+
T Consensus 60 itV~kaG~~Vtv~~~N~g~~p~~~m~Hn-------~vi~~~~~--~~~v~~~~m~~~~~~~v~~~d~~vl~~t~~l~pGe 130 (167)
T 3ay2_A 60 IQVSKACKEFTITLKHTGTQPKASMGHN-------LVIAKAED--MDGVFKDGVGAADTDYVKPDDARVVAHTKLIGGGE 130 (167)
T ss_dssp EEEETTCSSEEEEEEECSCSCHHHHCBC-------CEEEEGGG--HHHHHHHHGGGGGGTTSCTTCTTEEEECCCBCTTC
T ss_pred EEEecCCCEEEEEEEECCCCccccccce-------EEeccCcc--hhhhHHHhhhccccccccccccchhccceeeCCCC
Confidence 678 89999999999997542 54 33333220 0000 00000 0001 1223466789999
Q ss_pred EEEEEEEeC--CccceeeeecchhhhhcceEEEEEEe
Q 009054 481 WTAIYVALD--NVGMWNVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 481 ~v~irf~ad--npG~w~~HCHil~H~d~GMm~~~~V~ 515 (545)
...|.|.++ .||.|-|+|-+--|.. ||-..+.|.
T Consensus 131 t~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 131 ESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV 166 (167)
T ss_dssp EEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred EEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence 999999987 8999999999877888 898888885
No 131
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=95.16 E-value=0.047 Score=46.02 Aligned_cols=71 Identities=6% Similarity=0.022 Sum_probs=45.0
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.+.++.|++|.|+ |.+. .|-+++.. +.+... .. .+.+.+++...+.| +.||.|
T Consensus 22 ~i~V~~GdtV~f~--n~d~-~H~v~~~~----------~~~p~~-~~-----------~~~~~~g~t~~~tF--~~~G~y 74 (122)
T 2ux6_A 22 SLKVAPGDTVTFI--PTDK-GHNVETIK----------GMIPDG-AE-----------AFKSKINENYKVTF--TAPGVY 74 (122)
T ss_dssp EEEECTTEEEEEE--ESSS-SCCCEECT----------TCSCTT-CC-----------CCBCCTTCCEEEEE--CSCEEE
T ss_pred EEEECCCCEEEEE--ECCC-CcEEEEcc----------cccCCC-cc-----------eeecCCCCEEEEEe--CCCEEE
Confidence 4678999999885 4443 56665543 111110 00 11234677655554 899999
Q ss_pred eeeecchhhhhcceEEEEEEeC
Q 009054 495 NVRSEFWARQYLGQQFYLRVYS 516 (545)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V~~ 516 (545)
.|+|-+ |.. |-..+.|.+
T Consensus 75 ~y~C~~--H~~--M~G~I~V~~ 92 (122)
T 2ux6_A 75 GVKCTP--HPF--MVGVVQVGD 92 (122)
T ss_dssp EEEETT--EEE--EEEEEEESS
T ss_pred EEEeCC--Ccc--CEEEEEEeC
Confidence 999987 555 999999976
No 132
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=94.80 E-value=0.1 Score=44.71 Aligned_cols=72 Identities=13% Similarity=0.163 Sum_probs=51.4
Q ss_pred EecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCcccee
Q 009054 416 MGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMWN 495 (545)
Q Consensus 416 ~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~ 495 (545)
+.++.|+.|+|.+.|.+ ..|- |.|-+.+ . -+.+.||....+.|+++.||.|.
T Consensus 62 l~Vp~G~~V~~~vts~D-V~Hs-------f~ip~~~-----------~---------k~d~~PG~~~~~~~~~~~~G~y~ 113 (135)
T 2cua_A 62 IEVPQGAEIVFKITSPD-VIHG-------FHVEGTN-----------I---------NVEVLPGEVSTVRYTFKRPGEYR 113 (135)
T ss_dssp EEEETTSEEEEEEEBSS-SCEE-------EEETTSS-----------C---------EEEECBTBCEEEEEECCSCEEEE
T ss_pred EEEcCCCEEEEEEEeCC-ccce-------EEecCCC-----------c---------eeEeCCCCcEEEEEEcCCCEEEE
Confidence 67899999999999874 4443 4332111 0 14456777788999999999999
Q ss_pred eeecchh-hhhcceEEEEEEe
Q 009054 496 VRSEFWA-RQYLGQQFYLRVY 515 (545)
Q Consensus 496 ~HCHil~-H~d~GMm~~~~V~ 515 (545)
++|...- .-|.+|-..+.|.
T Consensus 114 ~~C~e~CG~~H~~M~g~v~V~ 134 (135)
T 2cua_A 114 IICNQYCGLGHQNMFGTIVVK 134 (135)
T ss_dssp EECCSCCSTTSTTCEEEEEEE
T ss_pred EECcccCCCCcCCCEEEEEEE
Confidence 9997622 2346898888885
No 133
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=94.47 E-value=0.091 Score=44.67 Aligned_cols=94 Identities=7% Similarity=0.003 Sum_probs=60.4
Q ss_pred eEEecCCC-cEEEEEEEcCCCC-----CCceeecCCceEEEeeccCc------CCCCCCCCCCC-CCC-CccceEEeCCC
Q 009054 414 SVMGADFR-GFIEIVFQNHENI-----VQSWHIDGYNFWVVGMNGGV------WTPASRNEYNL-RDA-VSRCTTQVYPK 479 (545)
Q Consensus 414 ~~~~~~~g-~~v~~~i~N~~~~-----~HP~HlHG~~F~Vl~~g~g~------~~~~~~~~~~~-~~p-~~rDTv~vp~~ 479 (545)
..+.++.| +.|.+++.|.+.. .|- |-+...+.-. .......++-. .++ ....|..|.||
T Consensus 18 ~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~-------~vi~~~~~~~~~~~~~m~~~~~~~~v~~~~~~~~~~t~~l~pG 90 (129)
T 1cuo_A 18 RSISVPASCAEFTVNFEHKGHMPKTGMGHN-------WVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPIIGGG 90 (129)
T ss_dssp SEEEEETTCSEEEEEEEECSSSCHHHHCBC-------CEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCCBCTT
T ss_pred CeEEEcCCCeEEEEEEEECCCCcccccccc-------eEEecCcchhhhHHHhhhccccccccccccccceeeeeEECCC
Confidence 34788999 9999999998754 354 4333322100 00000000000 011 12345678899
Q ss_pred CEEEEEEEeC---CccceeeeecchhhhhcceEEEEEEe
Q 009054 480 SWTAIYVALD---NVGMWNVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 480 ~~v~irf~ad---npG~w~~HCHil~H~d~GMm~~~~V~ 515 (545)
+...+.|.++ .||.|-|.|-+--|.. ||-..+.|.
T Consensus 91 et~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 91 EKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE 128 (129)
T ss_dssp CEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred CEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence 9999999997 8999999998877887 898888885
No 134
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=94.18 E-value=0.15 Score=43.29 Aligned_cols=91 Identities=10% Similarity=0.000 Sum_probs=58.8
Q ss_pred EEec-CCCcEEEEEEEcCCCCC-----CceeecCCceEEEeeccCcCCC--------CCCCCC-CCCCC-CccceEEeCC
Q 009054 415 VMGA-DFRGFIEIVFQNHENIV-----QSWHIDGYNFWVVGMNGGVWTP--------ASRNEY-NLRDA-VSRCTTQVYP 478 (545)
Q Consensus 415 ~~~~-~~g~~v~~~i~N~~~~~-----HP~HlHG~~F~Vl~~g~g~~~~--------~~~~~~-~~~~p-~~rDTv~vp~ 478 (545)
.+.+ +.|+.|.+++.|.+..+ |-|- +...+ .... .....+ .-.++ ....|..|.|
T Consensus 18 ~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~v-------i~~~~--~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~p 88 (128)
T 2iaa_C 18 SIVVDKTCKEFTINLKHTGKLPKAAMGHNVV-------VSKKS--DESAVATDGMKAGLNNDYVKAGDERVIAHTSVIGG 88 (128)
T ss_dssp EEEECTTCSEEEEEEEECSCSCHHHHCBCCE-------EEETT--HHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCT
T ss_pred EEEEecCCcEEEEEEEECCCCcccCCCceEE-------Ecccc--chhhHHHhhhhccccccccccccchhhccceeeCC
Confidence 3678 78999999999998553 6443 22211 0000 000000 00111 1234557899
Q ss_pred CCEEEEEEEeC--Cccc-eeeeecchhhhhcceEEEEEEe
Q 009054 479 KSWTAIYVALD--NVGM-WNVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 479 ~~~v~irf~ad--npG~-w~~HCHil~H~d~GMm~~~~V~ 515 (545)
|+...+.|.+. .||. |-|.|-+--|.. ||-..+.|.
T Consensus 89 Ges~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 89 GETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp TCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred CCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 99999999998 8994 999999877888 899998885
No 135
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=93.38 E-value=0.26 Score=41.75 Aligned_cols=91 Identities=8% Similarity=-0.024 Sum_probs=58.6
Q ss_pred EEec-CCCcEEEEEEEcCCCC-----CCceeecCCceEEEeeccCcCCC--------CCCCCCCC-CCC-CccceEEeCC
Q 009054 415 VMGA-DFRGFIEIVFQNHENI-----VQSWHIDGYNFWVVGMNGGVWTP--------ASRNEYNL-RDA-VSRCTTQVYP 478 (545)
Q Consensus 415 ~~~~-~~g~~v~~~i~N~~~~-----~HP~HlHG~~F~Vl~~g~g~~~~--------~~~~~~~~-~~p-~~rDTv~vp~ 478 (545)
.+.+ +.|+.|.+++.|.+.. .|- |-+...+. ... .....+-. .++ ....|..|.|
T Consensus 19 ~i~V~k~G~~vtv~~~N~g~~p~~~m~H~-------~vi~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~p 89 (129)
T 2ccw_A 19 EIVVDKSCKQFTMHLKHVGKMAKVAMGHN-------LVLTKDAD--KQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIGG 89 (129)
T ss_dssp EEEECTTCSEEEEEEEECSCCCHHHHCBC-------CEEEEGGG--HHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCT
T ss_pred eEEEecCCCEEEEEEEECCCcccccCcce-------EEEcCccc--hhhhHHHhhhhcccccccccccccceeeeeEECC
Confidence 3678 8899999999999855 354 33333220 000 00000000 011 1224556899
Q ss_pred CCEEEEEEEeC--Cccc-eeeeecchhhhhcceEEEEEEe
Q 009054 479 KSWTAIYVALD--NVGM-WNVRSEFWARQYLGQQFYLRVY 515 (545)
Q Consensus 479 ~~~v~irf~ad--npG~-w~~HCHil~H~d~GMm~~~~V~ 515 (545)
|+...+.|.++ .||. |-|.|-+--|.. ||-..+.|.
T Consensus 90 Get~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 90 GESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp TCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred CCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 99999999998 7866 999998877888 899888885
No 136
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=93.18 E-value=0.31 Score=41.24 Aligned_cols=92 Identities=9% Similarity=0.003 Sum_probs=58.2
Q ss_pred EEec-CCCcEEEEEEEcCCCC-----CCceeecCCceEEEeeccC------cCCCCCCCCC-CCCCC-CccceEEeCCCC
Q 009054 415 VMGA-DFRGFIEIVFQNHENI-----VQSWHIDGYNFWVVGMNGG------VWTPASRNEY-NLRDA-VSRCTTQVYPKS 480 (545)
Q Consensus 415 ~~~~-~~g~~v~~~i~N~~~~-----~HP~HlHG~~F~Vl~~g~g------~~~~~~~~~~-~~~~p-~~rDTv~vp~~~ 480 (545)
.+.+ +.|+.|.+++.|.+.. .|-|-| ...+.- ........++ .-.++ ....|-.|.||+
T Consensus 19 ~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi-------~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~pGe 91 (128)
T 1nwp_A 19 DIAIDKSCKTFTVELTHSGSLPKNVMGHNLVI-------SKEADMQPIATDGLSAGIDKQYLKDGDARVIAHTKVIGAGE 91 (128)
T ss_dssp EEEECTTCSEEEEEEEECSSCCHHHHCBCCEE-------EEGGGHHHHHHHHTTTCGGGTTSCTTCTTEEEECCCBCTTC
T ss_pred EEEEecCCCEEEEEEEECCCCcccCCCceEEE-------ccccchhhHHHHHhhccccccccccccchhheeeeeeCCCC
Confidence 4678 8999999999998855 364433 222100 0000000000 00111 122455689999
Q ss_pred EEEEEEEeC--Cccc-eeeeecchhhhhcceEEEEEE
Q 009054 481 WTAIYVALD--NVGM-WNVRSEFWARQYLGQQFYLRV 514 (545)
Q Consensus 481 ~v~irf~ad--npG~-w~~HCHil~H~d~GMm~~~~V 514 (545)
...+.|.+. .||. |-|.|-+--|.. ||-..+.|
T Consensus 92 t~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V 127 (128)
T 1nwp_A 92 KDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTL 127 (128)
T ss_dssp EEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEE
T ss_pred EEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEE
Confidence 999999997 7876 999999877888 88888877
No 137
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=93.11 E-value=0.33 Score=43.07 Aligned_cols=73 Identities=11% Similarity=0.196 Sum_probs=55.0
Q ss_pred EecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCcccee
Q 009054 416 MGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMWN 495 (545)
Q Consensus 416 ~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~ 495 (545)
+.++.|+.|++.+.|. +..|.|-+=.... -+.+.||..-.+.|.++.||.|.
T Consensus 95 l~VP~G~~Vr~~vTS~-DViHsf~IP~lgi---------------------------k~da~PG~~n~~~~~~~kpG~y~ 146 (168)
T 3s8f_B 95 IEVPQGAEIVFKITSP-DVIHGFHVEGTNI---------------------------NVEVLPGEVSTVRYTFKRPGEYR 146 (168)
T ss_dssp EEEETTSEEEEEEECS-SSCEEEEETTSSC---------------------------EEEECTTBCEEEEEECCSCEEEE
T ss_pred EEEeCCCeEEEEEecC-CceEEEEECCCCe---------------------------EEEecCCceeEEEEEeCCCEEEE
Confidence 5689999999999987 4566554432111 13455777788999999999999
Q ss_pred eeecch-hhhhcceEEEEEEeC
Q 009054 496 VRSEFW-ARQYLGQQFYLRVYS 516 (545)
Q Consensus 496 ~HCHil-~H~d~GMm~~~~V~~ 516 (545)
+.|... -+.|.+|-..+.|.+
T Consensus 147 g~Cse~CG~~Hs~M~g~V~V~e 168 (168)
T 3s8f_B 147 IICNQYCGLGHQNMFGTIVVKE 168 (168)
T ss_dssp EECCSCCSTTGGGCEEEEEEEC
T ss_pred EECCcCCCCCcCCCEEEEEEeC
Confidence 999864 467889999998863
No 138
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=91.94 E-value=1.2 Score=37.25 Aligned_cols=93 Identities=11% Similarity=0.085 Sum_probs=57.4
Q ss_pred eEEecCC-CcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCC-------CC-CCCC-CC-CCCCccceEEeCCCCEE
Q 009054 414 SVMGADF-RGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTP-------AS-RNEY-NL-RDAVSRCTTQVYPKSWT 482 (545)
Q Consensus 414 ~~~~~~~-g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~-------~~-~~~~-~~-~~p~~rDTv~vp~~~~v 482 (545)
.-+.++. |+.|.++|.|.+..+ --.=||.| ||.... .... .. ..++ .. ...+.-.|..|.||+..
T Consensus 18 ~~i~V~~~Ge~V~~~l~N~G~~p--~~~M~Hn~-Vl~~~~-~~~~~~~~~m~~~~~~~y~~~~d~~via~t~~l~pGes~ 93 (125)
T 3fsa_A 18 NAITVDKSCKQFTVNLSHPGNLP--KNVMGHNW-VLSTAA-DMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKD 93 (125)
T ss_dssp SEEEECTTCSEEEEEEECCSSCC--HHHHCBCC-EEEEHH-HHHHHHHHHHHHCGGGTTSCTTCTTCCEECCCBCTTCEE
T ss_pred CEEEEecCCCEEEEEEEECCccc--ccccCceE-EEcccc-hHHHHHHHHHhcChhhccCCCCCccceeccceeCCCcEE
Confidence 3477876 999999999998542 00002344 444321 0000 00 0011 10 11244567789999999
Q ss_pred EEEEEeC---CccceeeeecchhhhhcceEEEEEE
Q 009054 483 AIYVALD---NVGMWNVRSEFWARQYLGQQFYLRV 514 (545)
Q Consensus 483 ~irf~ad---npG~w~~HCHil~H~d~GMm~~~~V 514 (545)
.|.|.+. .+|.|-|-|- -|+ ||-..+.|
T Consensus 94 ~vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V 124 (125)
T 3fsa_A 94 SVTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTL 124 (125)
T ss_dssp EEEEEGGGC---CCEEEECS--SST--TCEEEEEE
T ss_pred EEEEeCcCcCCCccEEEEcC--CCC--CcEEEEEE
Confidence 9999987 8999999999 688 89888877
No 139
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=85.25 E-value=6.9 Score=32.40 Aligned_cols=71 Identities=17% Similarity=0.375 Sum_probs=50.3
Q ss_pred CCcEE--EEEEEecCCCCeeeEEEe-CceeEEEe--ecCccce--------eeEEeEEEEccCceEEEEEEeCC--CCcc
Q 009054 211 QGKTY--RFRISNVGLQHSLNFRIQ-GHKMKLVE--VEGTHTI--------QTTYSSLDVHVGQSYSVLVTMDQ--PPQD 275 (545)
Q Consensus 211 ~G~~~--rlRliNa~~~~~~~~~i~-gh~~~via--~DG~~~~--------p~~~~~v~l~pgeR~dv~v~~~~--~~g~ 275 (545)
.|+.+ .|.+.|.+... ..|.+. |+.+.++- .+|..+- ........|.|||...+-...++ .||.
T Consensus 16 ~g~~v~~~ltv~N~s~~~-v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQa~~~~tl~pGE~~~f~~~w~~~~~pG~ 94 (120)
T 3isy_A 16 EPEQIKFNMSLKNQSERA-IEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQAFQNLTLESGETYDFSDVWKEVPEPGT 94 (120)
T ss_dssp CSSCEEEEEEEEECSSSC-EEEEESSSCCEEEEEECTTCCEEEETTTTCCCCCCCEEEEECTTCEEEEEEEESSCCCSEE
T ss_pred CCCeEEEEEEEEcCCCCc-EEEEeCCCCEEEEEEECCCCCEEEEccccchhhhhhceEEECCCCEEEEEEEeCCCCCCcc
Confidence 45554 67788988854 467764 66544444 4576552 23567899999999999999884 5799
Q ss_pred eEEEEee
Q 009054 276 FYIAVST 282 (545)
Q Consensus 276 y~~~~~~ 282 (545)
|.+.+-.
T Consensus 95 Ytl~a~l 101 (120)
T 3isy_A 95 YEVKVTF 101 (120)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9998864
No 140
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=75.89 E-value=2.4 Score=38.70 Aligned_cols=77 Identities=6% Similarity=0.038 Sum_probs=55.2
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccc
Q 009054 414 SVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGM 493 (545)
Q Consensus 414 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~ 493 (545)
+.+.++.|+.|++.|.+.+- .| .|+|-+-+. . +.+-||....+.|.++.||.
T Consensus 41 n~l~lP~g~~V~~~lTS~DV-iH-------SF~IP~lgv-----------------K---~daiPGr~n~l~~~~~~pG~ 92 (205)
T 1cyx_A 41 NEIAFPANTPVYFKVTSNSV-MH-------SFFIPRLGS-----------------Q---IYAMAGMQTRLHLIANEPGT 92 (205)
T ss_dssp SEEEEETTSCEEEEEEESSS-CE-------EEEEGGGTE-----------------E---EEECTTCCEEEEECCSSSEE
T ss_pred ceEEEeCCCEEEEEEecCCc-ee-------eEEecccCc-----------------E---EEecCCceEEEEEEeCCCeE
Confidence 34778999999999998753 34 455543321 1 33446777888999999999
Q ss_pred eeeeecchh-hhhcceEEEEEEe-CCC
Q 009054 494 WNVRSEFWA-RQYLGQQFYLRVY-SPV 518 (545)
Q Consensus 494 w~~HCHil~-H~d~GMm~~~~V~-~~~ 518 (545)
|...|--+- --|..|-+.+.|+ .++
T Consensus 93 y~g~CsE~CG~~Hs~M~~~v~vv~~~~ 119 (205)
T 1cyx_A 93 YDGICAEICGPGHSGMKFKAIATPDRA 119 (205)
T ss_dssp EEEEECSCCSTTSTTCCEEEEEESSHH
T ss_pred EEEEcccccccchhhceEEEEEECCHH
Confidence 999998764 3466777888888 554
No 141
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=72.24 E-value=3.7 Score=39.84 Aligned_cols=78 Identities=6% Similarity=0.134 Sum_probs=57.2
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccc
Q 009054 414 SVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGM 493 (545)
Q Consensus 414 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~ 493 (545)
+.+.++.|+.|++.+.+.+ ..|-| +|-+-+. . +.+-||....+.|.++.||.
T Consensus 189 N~lvlP~g~~V~~~ltS~D-ViHsf-------~iP~lg~-----------------k---~daiPG~~n~~~~~~~~~G~ 240 (298)
T 3hb3_B 189 NPVVVPVGKKVLVQVTATD-VIHAW-------TIPAFAV-----------------K---QDAVPGRIAQLWFSVDQEGV 240 (298)
T ss_dssp SCEEEESSSEEEEEEEESS-SCEEE-------EEGGGTE-----------------E---EEECTTCCEEEEEECSSSEE
T ss_pred ceEEEEcCCEEEEEEEeCC-cccee-------eEcccCc-----------------e---EEecCCceEEEEEEeCCCEE
Confidence 4577999999999999865 44544 4432221 1 23345777789999999999
Q ss_pred eeeeecchh-hhhcceEEEEEEeCCCc
Q 009054 494 WNVRSEFWA-RQYLGQQFYLRVYSPVE 519 (545)
Q Consensus 494 w~~HCHil~-H~d~GMm~~~~V~~~~~ 519 (545)
|...|.-+- .-|..|-..++|+.+++
T Consensus 241 y~g~CsE~CG~~Hs~M~~~v~vvs~~~ 267 (298)
T 3hb3_B 241 YFGQCSELCGINHAYMPIVVKAVSQEK 267 (298)
T ss_dssp EEECCCSCCSTTTTSCCEEEEEECHHH
T ss_pred EEEEcccccCcCccCCeeEEEEEcHHH
Confidence 999998654 56778888999988764
No 142
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=69.32 E-value=46 Score=27.35 Aligned_cols=74 Identities=15% Similarity=0.119 Sum_probs=47.8
Q ss_pred eEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCcc----CCcCCCCCeEEEEEEeCC-
Q 009054 48 RQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGT----TCPIPPGKNFTYILQVKD- 122 (545)
Q Consensus 48 ~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~----q~~i~pG~~~~y~~~~~~- 122 (545)
...+-..|-+-=.=+|+...|.+..+.|.+.-.+ ..| -|+||-... ...|+||++.+|+...++
T Consensus 21 ~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~G~---~Vw--------rwS~~~~FtQa~~~~tl~pGE~~~f~~~w~~~ 89 (120)
T 3isy_A 21 KFNMSLKNQSERAIEFQFSTGQKFELVVYDSEHK---ERY--------RYSKEKMFTQAFQNLTLESGETYDFSDVWKEV 89 (120)
T ss_dssp EEEEEEEECSSSCEEEEESSSCCEEEEEECTTCC---EEE--------ETTTTCCCCCCCEEEEECTTCEEEEEEEESSC
T ss_pred EEEEEEEcCCCCcEEEEeCCCCEEEEEEECCCCC---EEE--------EccccchhhhhhceEEECCCCEEEEEEEeCCC
Confidence 3334444544334478888888888888875332 111 246665543 334999999999999863
Q ss_pred -cceeeeeecC
Q 009054 123 -QIGSYFYFPS 132 (545)
Q Consensus 123 -~~Gt~wYH~H 132 (545)
.+|+|..+.-
T Consensus 90 ~~pG~Ytl~a~ 100 (120)
T 3isy_A 90 PEPGTYEVKVT 100 (120)
T ss_dssp CCSEEEEEEEE
T ss_pred CCCccEEEEEE
Confidence 4899986643
No 143
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=64.52 E-value=6.2 Score=37.54 Aligned_cols=78 Identities=8% Similarity=0.097 Sum_probs=55.6
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccc
Q 009054 414 SVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGM 493 (545)
Q Consensus 414 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~ 493 (545)
+.+.++.|+.|++.+.+.+ ..| .|+|-+-|. ..| +-||..-.+.|.++.||.
T Consensus 171 n~l~lP~g~~v~~~~tS~D-ViH-------sf~ip~l~~-----------------k~d---a~PG~~n~~~~~~~~~G~ 222 (262)
T 2gsm_B 171 TAMVVPVNKTVVVQVTGAD-VIH-------SWTVPAFGV-----------------KQD---AVPGRLAQLWFRAEREGI 222 (262)
T ss_dssp SCEEEETTSEEEEEEEESS-SCE-------EEEEGGGTE-----------------EEE---ECBTCCEEEEEECCSCEE
T ss_pred ceEEEecCCEEEEEEEECc-ccc-------eeeecccCc-----------------eEE---ecCCceeEEEEecCCcEE
Confidence 4478999999999999875 444 444433321 123 335677788999999999
Q ss_pred eeeeecchh-hhhcceEEEEEEeCCCc
Q 009054 494 WNVRSEFWA-RQYLGQQFYLRVYSPVE 519 (545)
Q Consensus 494 w~~HCHil~-H~d~GMm~~~~V~~~~~ 519 (545)
|...|--+- --|..|-..++|+.+++
T Consensus 223 y~g~Cse~CG~~H~~M~~~v~vv~~~~ 249 (262)
T 2gsm_B 223 FFGQCSELCGISHAYMPITVKVVSEEA 249 (262)
T ss_dssp EEECCCSCCSTTGGGCCEEEEEECHHH
T ss_pred EEEEChHhcccCcccCeEEEEEEcHHH
Confidence 999998654 34667888888887653
No 144
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=59.32 E-value=23 Score=32.13 Aligned_cols=74 Identities=14% Similarity=0.001 Sum_probs=52.8
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCch-hhhhc
Q 009054 61 PDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVG-FQKAA 139 (545)
Q Consensus 61 P~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~~~~~ 139 (545)
..|.+..|+.|++.+++. +. | ||..++. .+++.-+-||..-...|. ++++|+|+..|..- ...-.
T Consensus 41 n~l~lP~g~~V~~~lTS~-DV---i--HSF~IP~-------lgvK~daiPGr~n~l~~~-~~~pG~y~g~CsE~CG~~Hs 106 (205)
T 1cyx_A 41 NEIAFPANTPVYFKVTSN-SV---M--HSFFIPR-------LGSQIYAMAGMQTRLHLI-ANEPGTYDGICAEICGPGHS 106 (205)
T ss_dssp SEEEEETTSCEEEEEEES-SS---C--EEEEEGG-------GTEEEEECTTCCEEEEEC-CSSSEEEEEEECSCCSTTST
T ss_pred ceEEEeCCCEEEEEEecC-Cc---e--eeEEecc-------cCcEEEecCCceEEEEEE-eCCCeEEEEEcccccccchh
Confidence 469999999999999986 22 2 3443321 112345678999999998 57899999999753 33445
Q ss_pred CeeeEEEEe
Q 009054 140 GGFGGIRIL 148 (545)
Q Consensus 140 Gl~G~liV~ 148 (545)
.|.+.++|.
T Consensus 107 ~M~~~v~vv 115 (205)
T 1cyx_A 107 GMKFKAIAT 115 (205)
T ss_dssp TCCEEEEEE
T ss_pred hceEEEEEE
Confidence 688888887
No 145
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=55.11 E-value=31 Score=28.06 Aligned_cols=47 Identities=17% Similarity=0.385 Sum_probs=32.0
Q ss_pred cEEEEEEEecCCCC-eeeEEEeCc-eeEEEeecCccceeeEEeEEEEccCceEEEEEEe
Q 009054 213 KTYRFRISNVGLQH-SLNFRIQGH-KMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTM 269 (545)
Q Consensus 213 ~~~rlRliNa~~~~-~~~~~i~gh-~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~ 269 (545)
-.|+|||+|.+... .+.|.+.|. .+.+++ + ..+.+.|||..++-|..
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g-------~---~~i~v~~g~~~~~~v~v 81 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWYG-------K---QTIQVEPGEVLNLPMSL 81 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEES-------C---CEEEECTTCEEEEEEEE
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEeC-------C---CcEEECCCCEEEEEEEE
Confidence 35899999999754 567777764 233332 1 14899999987766654
No 146
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=53.74 E-value=10 Score=35.16 Aligned_cols=79 Identities=6% Similarity=0.018 Sum_probs=55.0
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCcc
Q 009054 413 TSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVG 492 (545)
Q Consensus 413 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG 492 (545)
.+.+.++.|+.|++.+.+.+ ..| +|+|=+-|. ..| .-||..-.+.|.++.||
T Consensus 139 dn~lvlP~~~~Vr~~vtS~D-ViH-------sf~vP~lg~-----------------K~D---aiPGr~n~~~~~~~~~G 190 (227)
T 1v54_B 139 DNRVVLPMEMTIRMLVSSED-VLH-------SWAVPSLGL-----------------KTD---AIPGRLNQTTLMSSRPG 190 (227)
T ss_dssp SSCEEEETTSCEEEEEEESS-SCE-------EEEEGGGTE-----------------EEE---ECTTCCEEEEECCSSCE
T ss_pred CceEEEecCCEEEEEEEeCc-ccc-------eeeecccCc-----------------EEE---ecCCceEEEEEecCCcE
Confidence 34577999999999998865 444 444433221 123 33566678889999999
Q ss_pred ceeeeecchh-hhhcceEEEEEEeCCCc
Q 009054 493 MWNVRSEFWA-RQYLGQQFYLRVYSPVE 519 (545)
Q Consensus 493 ~w~~HCHil~-H~d~GMm~~~~V~~~~~ 519 (545)
.|...|.-+- --|.-|-..++|+.+++
T Consensus 191 ~y~g~Cse~CG~~Hs~M~~~v~vv~~~~ 218 (227)
T 1v54_B 191 LYYGQCSEICGSNHSFMPIVLELVPLKY 218 (227)
T ss_dssp EEEECCCSCCSTTGGGCCEEEEEECHHH
T ss_pred EEEEEehhhcccccccCeEEEEEEcHHH
Confidence 9999998764 34567777888887653
No 147
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=49.56 E-value=12 Score=31.17 Aligned_cols=64 Identities=22% Similarity=0.342 Sum_probs=37.3
Q ss_pred EEEEEeCCCCCc---eEeeCCccCCC---CCCCCCCCccCCcCCCCCeEEEEEEe--CCcceeeeeecCchhhhhcCeee
Q 009054 72 IINVHNSLPEPF---LISWNGVQQRR---NSYEDGVYGTTCPIPPGKNFTYILQV--KDQIGSYFYFPSVGFQKAAGGFG 143 (545)
Q Consensus 72 ~v~~~N~l~~~~---~iH~HG~~~~~---~~~~DGv~~~q~~i~pG~~~~y~~~~--~~~~Gt~wYH~H~~~~~~~Gl~G 143 (545)
.|++.|....+. +=||.=....+ .-.-+||-|-|.-|.||++|.|.=-. ..+.|+ |.|
T Consensus 34 ~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PGe~f~YtSg~~L~tp~G~--------------M~G 99 (127)
T 2f1e_A 34 SIRIQNAGAVPARLVARHWQITDGNGRTEQVDGEGVVGEQPWLRPGEAFHYTSGVLLETEQGQ--------------MQG 99 (127)
T ss_dssp EEEEEECSSSCEEEEEEEEEEEETTSCEEEEEESSBTTBCCEECTTCEEEEEEEEEESSSCEE--------------EEE
T ss_pred EEEEEeCCCCCEEEEeceEEEEeCCCCEEEEECCCeecCCCcCCCCCceEEeCCcCcCCCcEE--------------EEE
Confidence 367788776554 44775221111 11245665557789999988885322 344554 667
Q ss_pred EEEEeC
Q 009054 144 GIRILS 149 (545)
Q Consensus 144 ~liV~~ 149 (545)
.+....
T Consensus 100 ~y~m~~ 105 (127)
T 2f1e_A 100 HYDMVA 105 (127)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 776665
No 148
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=46.87 E-value=13 Score=31.11 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=37.3
Q ss_pred EEEEEeCCCCCc---eEeeCCccCCC---CCCCCCCCccCCcCCCCCeEEEEEEe--CCcceeeeeecCchhhhhcCeee
Q 009054 72 IINVHNSLPEPF---LISWNGVQQRR---NSYEDGVYGTTCPIPPGKNFTYILQV--KDQIGSYFYFPSVGFQKAAGGFG 143 (545)
Q Consensus 72 ~v~~~N~l~~~~---~iH~HG~~~~~---~~~~DGv~~~q~~i~pG~~~~y~~~~--~~~~Gt~wYH~H~~~~~~~Gl~G 143 (545)
.|++.|....+. +=||.=....+ .-.-+||-|-|.-|.||++|.|.=-. ..+.|+ |.|
T Consensus 33 ~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PGe~f~YtSg~~L~tp~G~--------------M~G 98 (126)
T 1xvs_A 33 LITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKANDEYTYSSGTALDTPVGV--------------MQG 98 (126)
T ss_dssp EEEEEECSSSCEEEEEEEEEEEETTCCEEEEEEESBTTBCCEECTTCEEEEEEEEEESSSEEE--------------EEE
T ss_pred EEEEEECCCCCEEEEecEEEEEeCCCCEEEEECCceEcCCCcCCCCCceEEeCCcCcCCCcEE--------------EEE
Confidence 367778776554 44775221111 11235555557789999988886432 344555 667
Q ss_pred EEEEeC
Q 009054 144 GIRILS 149 (545)
Q Consensus 144 ~liV~~ 149 (545)
.+....
T Consensus 99 ~y~m~~ 104 (126)
T 1xvs_A 99 QYLMID 104 (126)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 776654
No 149
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=46.08 E-value=11 Score=36.88 Aligned_cols=76 Identities=8% Similarity=0.130 Sum_probs=53.1
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEeCCccce
Q 009054 415 VMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNLRDAVSRCTTQVYPKSWTAIYVALDNVGMW 494 (545)
Q Consensus 415 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w 494 (545)
.+.++.|+.|++.+...+ ..| +|+|-+-+. . +.+-||....+.|.++.||.|
T Consensus 152 ~l~lP~g~~V~~~lTS~D-ViH-------sf~IP~lg~-----------------k---~DaiPGr~n~~~~~~~~~G~y 203 (315)
T 1fft_B 152 EIAFPANTPVYFKVTSNS-VMN-------SFFIPRLGS-----------------Q---IYAMAGMQTRLHLIANEPGTY 203 (315)
T ss_dssp BCCCCSSSEEEEEECBSS-SCE-------EEEEGGGTE-----------------E---EEECBTSCEEEEEECCSCBCC
T ss_pred eEEEeCCCEEEEEEEeCC-ccc-------eeeecccCc-----------------E---EeecCCcceeeEEecCCCeEE
Confidence 467899999999998765 444 454433221 1 223356777889999999999
Q ss_pred eeeecchh-hhhcceEEEEEEe-CCC
Q 009054 495 NVRSEFWA-RQYLGQQFYLRVY-SPV 518 (545)
Q Consensus 495 ~~HCHil~-H~d~GMm~~~~V~-~~~ 518 (545)
...|--+- --|..|-..++|+ .++
T Consensus 204 ~g~CsE~CG~~Hs~M~~~v~vv~~~~ 229 (315)
T 1fft_B 204 DGISASYSGPGFSGMKFKAIATPDRA 229 (315)
T ss_dssp EEBCCSCCSTTTTTCCEECCBCSSTH
T ss_pred EEeccccchhhHHhccceEEEecCHH
Confidence 99998764 3466777888887 554
No 150
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=44.00 E-value=17 Score=30.91 Aligned_cols=63 Identities=21% Similarity=0.322 Sum_probs=36.8
Q ss_pred EEEEeCCCCCc---eEeeCCccCCC---CCCCCCCCccCCcCCCCCeEEEEEEe--CCcceeeeeecCchhhhhcCeeeE
Q 009054 73 INVHNSLPEPF---LISWNGVQQRR---NSYEDGVYGTTCPIPPGKNFTYILQV--KDQIGSYFYFPSVGFQKAAGGFGG 144 (545)
Q Consensus 73 v~~~N~l~~~~---~iH~HG~~~~~---~~~~DGv~~~q~~i~pG~~~~y~~~~--~~~~Gt~wYH~H~~~~~~~Gl~G~ 144 (545)
|++.|....+. +=||.=....+ .-..+||-|-|.-|.||++|.|.=-. +.+.|+ |.|.
T Consensus 39 ItI~N~~~~~vQL~sRhW~ItD~~G~~~eV~G~GVVGeqPvL~PGe~F~YtSg~~L~Tp~G~--------------M~G~ 104 (139)
T 1xq4_A 39 VRITNTGSHPAQVISRHWIITDGEERVQEVRGLGVVGQQPLLAPGETFEYTSGCPLPTPIGT--------------MRGT 104 (139)
T ss_dssp EEEEECSSSCEEEEEEEEEEECTTSCEEEEEEESSSSCCCEECTTCEEEEEEEEEESSSEEE--------------EEEE
T ss_pred EEEEeCCCCCEEEEecEEEEEeCCCCEEEEECCCeecCCCcCCCCCceEEcCCcCcCCCceE--------------EEEE
Confidence 67778766554 44775221111 11235555557779999988886432 344565 6677
Q ss_pred EEEeC
Q 009054 145 IRILS 149 (545)
Q Consensus 145 liV~~ 149 (545)
+....
T Consensus 105 y~m~~ 109 (139)
T 1xq4_A 105 YHCVG 109 (139)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 76665
No 151
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A
Probab=43.75 E-value=34 Score=28.39 Aligned_cols=62 Identities=8% Similarity=0.116 Sum_probs=36.3
Q ss_pred CceEEEecCCEEEEEEEeCCCC---C--ceEe--eCCccCCC-CCCCCCCCccCCcCCCCCeEEEEEEeC
Q 009054 60 GPDIYSVTNDNLIINVHNSLPE---P--FLIS--WNGVQQRR-NSYEDGVYGTTCPIPPGKNFTYILQVK 121 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~---~--~~iH--~HG~~~~~-~~~~DGv~~~q~~i~pG~~~~y~~~~~ 121 (545)
.+.=.+++|+.+.|.+.=..+. . +.+| ..|+..+- ....|+=-++.|||.+|+.++|.+.++
T Consensus 24 ~~pC~l~rG~~~~i~~~f~~~~~~~~l~~~v~~~~~g~~ip~p~~~~daC~~~~CPl~~G~~~~y~~~~~ 93 (129)
T 1xwv_A 24 SDPCIIHRGKPFTLEALFDANQNTKTAKIEIKASLDGLEIDVPGIDTNACHFMKCPLVKGQQYDAKYTWN 93 (129)
T ss_dssp TSCEEEETTSEEEEEEEEECCSCBSCCEEEEEEEETTEEECCCSCCCBGGGTSCSSBCTTCEEEEEEEEE
T ss_pred CCCCEEeCCCeEEEEEEEECCCccceEEEEEEEEEcCEEeecCCCCCCccCCccCcccCCEEEEEEEEeE
Confidence 3445778888888877722211 1 2233 23544432 122343333479999999999998763
No 152
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=42.25 E-value=73 Score=30.04 Aligned_cols=75 Identities=13% Similarity=0.098 Sum_probs=51.2
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCch-hhhhc
Q 009054 61 PDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVG-FQKAA 139 (545)
Q Consensus 61 P~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~~~~~ 139 (545)
..|.+..|+.|++.+++. +.- ||..++. .+++.-+-||..-...|. ++++|+|...|..- .....
T Consensus 171 n~l~lP~g~~v~~~~tS~-DVi-----Hsf~ip~-------l~~k~da~PG~~n~~~~~-~~~~G~y~g~Cse~CG~~H~ 236 (262)
T 2gsm_B 171 TAMVVPVNKTVVVQVTGA-DVI-----HSWTVPA-------FGVKQDAVPGRLAQLWFR-AEREGIFFGQCSELCGISHA 236 (262)
T ss_dssp SCEEEETTSEEEEEEEES-SSC-----EEEEEGG-------GTEEEEECBTCCEEEEEE-CCSCEEEEECCCSCCSTTGG
T ss_pred ceEEEecCCEEEEEEEEC-ccc-----ceeeecc-------cCceEEecCCceeEEEEe-cCCcEEEEEEChHhcccCcc
Confidence 469999999999999987 222 3333221 011234668998888998 58899999999843 33334
Q ss_pred CeeeEEEEeC
Q 009054 140 GGFGGIRILS 149 (545)
Q Consensus 140 Gl~G~liV~~ 149 (545)
.|.+.+.|.+
T Consensus 237 ~M~~~v~vv~ 246 (262)
T 2gsm_B 237 YMPITVKVVS 246 (262)
T ss_dssp GCCEEEEEEC
T ss_pred cCeEEEEEEc
Confidence 4777777765
No 153
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=40.80 E-value=84 Score=30.21 Aligned_cols=76 Identities=16% Similarity=0.081 Sum_probs=52.7
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCch-hhhhc
Q 009054 61 PDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVG-FQKAA 139 (545)
Q Consensus 61 P~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~~~~~ 139 (545)
..|.+..|+.|++.+++.. .| |+..++. .+++.-+-||..-...|. ++++|+|...|..- .....
T Consensus 189 N~lvlP~g~~V~~~ltS~D----Vi--Hsf~iP~-------lg~k~daiPG~~n~~~~~-~~~~G~y~g~CsE~CG~~Hs 254 (298)
T 3hb3_B 189 NPVVVPVGKKVLVQVTATD----VI--HAWTIPA-------FAVKQDAVPGRIAQLWFS-VDQEGVYFGQCSELCGINHA 254 (298)
T ss_dssp SCEEEESSSEEEEEEEESS----SC--EEEEEGG-------GTEEEEECTTCCEEEEEE-CSSSEEEEECCCSCCSTTTT
T ss_pred ceEEEEcCCEEEEEEEeCC----cc--ceeeEcc-------cCceEEecCCceEEEEEE-eCCCEEEEEEcccccCcCcc
Confidence 5799999999999999952 22 3332211 011234578998899998 58899999999853 44445
Q ss_pred CeeeEEEEeCC
Q 009054 140 GGFGGIRILSR 150 (545)
Q Consensus 140 Gl~G~liV~~~ 150 (545)
.|.+.+.|.++
T Consensus 255 ~M~~~v~vvs~ 265 (298)
T 3hb3_B 255 YMPIVVKAVSQ 265 (298)
T ss_dssp SCCEEEEEECH
T ss_pred CCeeEEEEEcH
Confidence 57777777763
No 154
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=40.44 E-value=15 Score=31.06 Aligned_cols=63 Identities=22% Similarity=0.337 Sum_probs=36.6
Q ss_pred EEEEeCCCCCc---eEeeCCccCCC---CCCCCCCCccCCcCCCCCeEEEEEEe--CCcceeeeeecCchhhhhcCeeeE
Q 009054 73 INVHNSLPEPF---LISWNGVQQRR---NSYEDGVYGTTCPIPPGKNFTYILQV--KDQIGSYFYFPSVGFQKAAGGFGG 144 (545)
Q Consensus 73 v~~~N~l~~~~---~iH~HG~~~~~---~~~~DGv~~~q~~i~pG~~~~y~~~~--~~~~Gt~wYH~H~~~~~~~Gl~G~ 144 (545)
|++.|....+. +=||-=....+ .-..+||-|-|.-|.||++|.|.=-. ..+.|+ |.|-
T Consensus 34 ItI~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVGeqP~L~PGe~F~YtSg~~L~Tp~G~--------------M~G~ 99 (134)
T 1tza_A 34 ITIINLGEQAAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNTAYQYTSGTVLDTPFGI--------------MYGT 99 (134)
T ss_dssp EEEEECSSSCEEEEEEEEEEEETTSCEEEEEEESBTTBCCEECTTEEEEEEEEEEESSSEEE--------------EEEE
T ss_pred EEEEeCCCCCEEEEecEEEEEeCCCCEEEEEcCceEcCCCcCCCCCceEEcCCcCcCCCceE--------------EEEE
Confidence 67778766554 44775221111 11235655557789999988886432 344565 6677
Q ss_pred EEEeC
Q 009054 145 IRILS 149 (545)
Q Consensus 145 liV~~ 149 (545)
+....
T Consensus 100 y~m~~ 104 (134)
T 1tza_A 100 YGMVS 104 (134)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66654
No 155
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=39.84 E-value=38 Score=28.14 Aligned_cols=62 Identities=19% Similarity=0.304 Sum_probs=36.1
Q ss_pred CceEEEecCCEEEEEEE---eCCCCCce--Ee--eCCccCCC-CCCCCCCC-ccCCcCCCCCeEEEEEEeC
Q 009054 60 GPDIYSVTNDNLIINVH---NSLPEPFL--IS--WNGVQQRR-NSYEDGVY-GTTCPIPPGKNFTYILQVK 121 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~---N~l~~~~~--iH--~HG~~~~~-~~~~DGv~-~~q~~i~pG~~~~y~~~~~ 121 (545)
.+.=.+++|+.+.|.+. |.-..... +| ..|+..+- ....|+=. ++.|||.+|+.++|.+.++
T Consensus 25 ~~PC~l~rG~~~~i~i~f~~~~~~~~~~~~v~~~~~gv~vp~~~~~~daC~~g~~CPl~~G~~~~y~~~lp 95 (130)
T 1nep_A 25 TQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVMGIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLP 95 (130)
T ss_dssp SSSEEEETTCEEEEEEEEEESSCBSCCEEEEEEEETTEEEECCCSCCBGGGTTCCSSBCTTCEEEEEEEEE
T ss_pred CCCCEEEcCCeEEEEEEEEcccccceEEEEEEEEECCEEeeccCCCCCcccCCCcCcccCCcEEEEEEEeE
Confidence 34566788888888776 22211112 22 23443321 12234432 3479999999999998874
No 156
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=38.90 E-value=30 Score=27.53 Aligned_cols=53 Identities=15% Similarity=0.106 Sum_probs=34.0
Q ss_pred CEEEEEEEeCCCCCc---eEeeCCccCCCCCCCCCCCcc-CCcCCCCCeEEEEEEe-CCcceee
Q 009054 69 DNLIINVHNSLPEPF---LISWNGVQQRRNSYEDGVYGT-TCPIPPGKNFTYILQV-KDQIGSY 127 (545)
Q Consensus 69 d~v~v~~~N~l~~~~---~iH~HG~~~~~~~~~DGv~~~-q~~i~pG~~~~y~~~~-~~~~Gt~ 127 (545)
=.+.|+|+|-|+.+. .++.-|. +-..+ --+ ...|.||++..+++.+ |..+|..
T Consensus 22 l~v~vsf~NPL~~~L~~c~~~vEG~-----GL~~~-~~~~~~~v~pg~~~~~~~~~~P~~~G~~ 79 (102)
T 2xzz_A 22 CEVQIVFKNPLPVTLTNVVFRLEGS-----GLQRP-KILNVGDIGGNETVTLRQSFVPVRPGPR 79 (102)
T ss_dssp EEEEEEEECCSSSCBCSEEEEEEET-----TTEEE-EEEEECCBCTTCEEEEEEEECCCSCSSC
T ss_pred EEEEEEEECCCCCcccCEEEEEECC-----CCCcc-eEEEcCcCCCCCEEEEEEEEecCcccce
Confidence 357889999997653 4454442 11222 111 3469999999999987 5567764
No 157
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=32.77 E-value=44 Score=27.27 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=28.2
Q ss_pred EEEEeCCcceeeeeecCchhhhhcCeeeEE-EEeCCC
Q 009054 116 YILQVKDQIGSYFYFPSVGFQKAAGGFGGI-RILSRP 151 (545)
Q Consensus 116 y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~l-iV~~~~ 151 (545)
..+++ +.+|++||-|-...+=..||...| .|....
T Consensus 72 ~~v~l-~~~G~~yFic~~~~HC~~Gmkl~In~V~~~~ 107 (116)
T 1x9u_A 72 VKIML-NTTGPQYYICTVGDHCRVGQKLSINVVGAGG 107 (116)
T ss_dssp EEEEC-CSCEEEEEECCSTTTTTTTCEEEEEEECC--
T ss_pred eEEEE-CCCCCEEEECCCCCccccCCEEEEEEECCCC
Confidence 46776 569999999998888889999999 887643
No 158
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=31.61 E-value=1.5e+02 Score=29.44 Aligned_cols=68 Identities=18% Similarity=0.279 Sum_probs=0.0
Q ss_pred eeEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCc---eEeeCCccCCCCCC-------------CCCCCcc-CCcCC
Q 009054 47 VRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPF---LISWNGVQQRRNSY-------------EDGVYGT-TCPIP 109 (545)
Q Consensus 47 ~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~---~iH~HG~~~~~~~~-------------~DGv~~~-q~~i~ 109 (545)
++..+..-+=++||-+++++ ++++|+.+++. ..-.-|++...+.. .+|.- . . ||+
T Consensus 284 V~~~v~~A~Y~vpgR~l~~~------~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~-s~~-pI~ 355 (419)
T 3rfr_A 284 VTTELNGGVYKVPGRELTIN------VKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLS-NDD-VIA 355 (419)
T ss_dssp CEEEEEEEEEESSSSEEEEE------EEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCC-CCC-CBC
T ss_pred eEEEEeceEEecCCcEEEEE------EEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCC-CCC-CcC
Q ss_pred CCCeEEEEEEeCC
Q 009054 110 PGKNFTYILQVKD 122 (545)
Q Consensus 110 pG~~~~y~~~~~~ 122 (545)
|||+.+.+..+.+
T Consensus 356 PGETrt~~V~a~d 368 (419)
T 3rfr_A 356 PGESKEIVVKIQD 368 (419)
T ss_dssp TTCEEEEEEEEEC
T ss_pred CCcceEEEEEeeh
No 159
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=27.18 E-value=1.3e+02 Score=29.55 Aligned_cols=68 Identities=15% Similarity=0.242 Sum_probs=37.9
Q ss_pred eEEEEEEcCcccCceEEEecCCEEEEEEEeCCCCCc--------eEeeCCccC--CCCCCCC------CCCcc-CCcCCC
Q 009054 48 RQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPF--------LISWNGVQQ--RRNSYED------GVYGT-TCPIPP 110 (545)
Q Consensus 48 ~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~l~~~~--------~iH~HG~~~--~~~~~~D------Gv~~~-q~~i~p 110 (545)
+..+..-+=++||-++++ .++++|+.+++. +++|=--.+ ..+..-| |.-.. ..||+|
T Consensus 251 ~~~v~~A~Y~vpgR~l~~------~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~P 324 (382)
T 1yew_A 251 SVKVEDATYRVPGRAMRM------KLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAP 324 (382)
T ss_dssp EEEEEEEEEESSCSEEEE------EEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBCT
T ss_pred EEEeeccEEecCCcEEEE------EEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcCC
Confidence 344444444578887754 478888876553 333322111 1111111 22112 678999
Q ss_pred CCeEEEEEEeC
Q 009054 111 GKNFTYILQVK 121 (545)
Q Consensus 111 G~~~~y~~~~~ 121 (545)
||+.+.+..+.
T Consensus 325 GETr~~~v~a~ 335 (382)
T 1yew_A 325 GETRTVDVTAS 335 (382)
T ss_dssp TCEEEEEEEEE
T ss_pred CceeEEEEEee
Confidence 99999999863
No 160
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=25.38 E-value=1.2e+02 Score=26.70 Aligned_cols=85 Identities=9% Similarity=-0.005 Sum_probs=47.7
Q ss_pred CeEEEcccCCCCceEEEeCCcEEEEEEEecCCCCeeeEEEeCceeEEEeecCccceeeE----EeE--EE-EccCceEEE
Q 009054 193 DGILINGHGSNGASFTVEQGKTYRFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTT----YSS--LD-VHVGQSYSV 265 (545)
Q Consensus 193 ~~~liNG~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~----~~~--v~-l~pgeR~dv 265 (545)
+..+.|..+. +.-.+..|+.+++|+--......-.+.+ .|.+-..+|..+--.. ... -. +.+|+.+.+
T Consensus 52 ~v~l~d~~G~--~~~~~~~Ge~v~l~i~~~~~~~i~~~v~---G~~Ik~~~G~~I~g~nT~~~~~~~~~~~~~~G~~~~v 126 (188)
T 2r5o_A 52 DYHIQSAGVD--FPPSLTGNQQTDFLMKVVFEYDFDCVVP---GILIKTLDGLFLYGTNSFLASEGRENISVSRGDVRVF 126 (188)
T ss_dssp EEEEEETTEE--SCSSEETTCEEEEEEEEEESSCEEEEEE---EEEEEETTCCEEEEEEHHHHTTTCCCEEECTTCEEEE
T ss_pred EEEEEECCCC--EeeEEeCCCEEEEEEEEEECCcCCccEE---EEEEECCCCCEEEecCcccccccccccccCCCCEEEE
Confidence 3445565554 4455889999888876655433222222 2445555666542111 011 12 578997665
Q ss_pred EEEeCC--CCcceEEEEee
Q 009054 266 LVTMDQ--PPQDFYIAVST 282 (545)
Q Consensus 266 ~v~~~~--~~g~y~~~~~~ 282 (545)
.+.++- .+|+|.+.+..
T Consensus 127 ~f~f~l~L~~G~Y~lsv~i 145 (188)
T 2r5o_A 127 KFSLPVDLNSGDYLLSFGI 145 (188)
T ss_dssp EEEEECCBCSEEEEEEEEE
T ss_pred EEEEecccCCCeEEEEEEE
Confidence 555442 68999998764
No 161
>2h7w_A Chagasin; beta-strands, immunoglobulin-fold, hydrolase inhibitor; 1.70A {Trypanosoma cruzi} SCOP: b.1.26.1 PDB: 2nnr_A 2oul_B 3cbj_B 3cbk_B 3e1z_A 2fo8_A 2nqd_A*
Probab=23.75 E-value=3e+02 Score=22.70 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=36.4
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCC--------CccCCcCCCCCeEEEEEEeCCcceee
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGV--------YGTTCPIPPGKNFTYILQVKDQIGSY 127 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv--------~~~q~~i~pG~~~~y~~~~~~~~Gt~ 127 (545)
|-+|.++.||++.|.|.-+-..+.+=..... .+..-.|++ |.-...+-.|+...+.|++ .++|+.
T Consensus 32 ~~~I~v~~Ge~~~I~L~~NPTTGY~W~~~~~--~~~~L~~~~~~v~~~y~p~~~~~vGagG~~~w~f~A-~~~G~~ 104 (131)
T 2h7w_A 32 GATLTVAVGELVEIQLPSNPTTGFAWYFEGG--TKESPNESMFTVENKYFPPDSKLLGAGGTEHFHVTV-KAAGTH 104 (131)
T ss_dssp TCEEEECTTCEEEEEEEECGGGSCEEEBTTT--BSSCSCTTTEEEEEEEECCTTCCTTCCEEEEEEEEE-CSSEEE
T ss_pred CCEEEEeCCCEEEEEeCCCCCCCeEEEEecC--CCccccccceeecceeeeCCCCCcCCCcEEEEEEEE-ccCceE
Confidence 5579999999999999976533333222211 001112222 1001124456778888885 567764
No 162
>2wtp_A ORF131 protein, CZCE; metal binding protein, heavy metal, copper binding; HET: TRS; 1.50A {Ralstonia metallidurans CH34} PDB: 2wto_A*
Probab=22.80 E-value=26 Score=29.22 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=0.0
Q ss_pred eEEEeCCcEEEEEEEecCCCCee
Q 009054 206 SFTVEQGKTYRFRISNVGLQHSL 228 (545)
Q Consensus 206 ~~~v~~G~~~rlRliNa~~~~~~ 228 (545)
.++|++||++||.+-|-+-.+.+
T Consensus 72 ~InV~~GETVrF~v~nkt~~W~F 94 (131)
T 2wtp_A 72 YVNVDSGETVAFRAGEKIVAWTF 94 (131)
T ss_dssp EEEEETTCEEEEEETTEEEEEEE
T ss_pred EEEecCCCEEEEEeCCcEEEEEE
No 163
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=22.57 E-value=72 Score=25.94 Aligned_cols=34 Identities=15% Similarity=0.050 Sum_probs=27.7
Q ss_pred EEEeCCccceeeeecchhhhhcceEEEE-EEeCCC
Q 009054 485 YVALDNVGMWNVRSEFWARQYLGQQFYL-RVYSPV 518 (545)
Q Consensus 485 rf~adnpG~w~~HCHil~H~d~GMm~~~-~V~~~~ 518 (545)
++..+.+|.+-|=|=...|=..||-+.+ .|..+.
T Consensus 73 ~v~l~~~G~~yFic~~~~HC~~Gmkl~In~V~~~~ 107 (116)
T 1x9u_A 73 KIMLNTTGPQYYICTVGDHCRVGQKLSINVVGAGG 107 (116)
T ss_dssp EEECCSCEEEEEECCSTTTTTTTCEEEEEEECC--
T ss_pred EEEECCCCCEEEECCCCCccccCCEEEEEEECCCC
Confidence 4566889999999999999999999999 776554
No 164
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=22.23 E-value=2e+02 Score=26.33 Aligned_cols=76 Identities=11% Similarity=-0.036 Sum_probs=49.3
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCccCCcCCCCCeEEEEEEeCCcceeeeeecCch-hhhh
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSYFYFPSVG-FQKA 138 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~~~~ 138 (545)
...+.+..|+.|++.++... - | |+..++. .+++.-.-||..-...|. ++++|+|+..|..- ....
T Consensus 139 dn~lvlP~~~~Vr~~vtS~D-V---i--Hsf~vP~-------lg~K~DaiPGr~n~~~~~-~~~~G~y~g~Cse~CG~~H 204 (227)
T 1v54_B 139 DNRVVLPMEMTIRMLVSSED-V---L--HSWAVPS-------LGLKTDAIPGRLNQTTLM-SSRPGLYYGQCSEICGSNH 204 (227)
T ss_dssp SSCEEEETTSCEEEEEEESS-S---C--EEEEEGG-------GTEEEEECTTCCEEEEEC-CSSCEEEEECCCSCCSTTG
T ss_pred CceEEEecCCEEEEEEEeCc-c---c--ceeeecc-------cCcEEEecCCceEEEEEe-cCCcEEEEEEehhhccccc
Confidence 35799999999999999852 2 2 2332211 011223567888888888 58899999999743 2223
Q ss_pred cCeeeEEEEeC
Q 009054 139 AGGFGGIRILS 149 (545)
Q Consensus 139 ~Gl~G~liV~~ 149 (545)
+-|.+.+.|.+
T Consensus 205 s~M~~~v~vv~ 215 (227)
T 1v54_B 205 SFMPIVLELVP 215 (227)
T ss_dssp GGCCEEEEEEC
T ss_pred ccCeEEEEEEc
Confidence 34666666655
No 165
>2c34_A ICP, inhibitor of cysteine peptidases; chagasin, immunoglobulin fold; NMR {Leishmania mexicana} SCOP: b.1.26.1
Probab=21.01 E-value=2.8e+02 Score=22.24 Aligned_cols=67 Identities=9% Similarity=0.055 Sum_probs=37.0
Q ss_pred CceEEEecCCEEEEEEEeCCCCCceEeeCCccCCCCCCCCCCCc----c-----CCcCCCCCeEEEEEEeCCcceee
Q 009054 60 GPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSYEDGVYG----T-----TCPIPPGKNFTYILQVKDQIGSY 127 (545)
Q Consensus 60 gP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~----~-----q~~i~pG~~~~y~~~~~~~~Gt~ 127 (545)
|-+|.++.||++.|.|.-+-..+.+=......-...-..+|.-. . ...+-.|+...+.|++ .++|+.
T Consensus 14 ~~~i~~~~Ge~~~I~L~~NPtTGY~W~~~~~~~~~~l~~~gl~~~s~y~~~~~~~~~vG~gG~~~~~f~a-~~~G~~ 89 (116)
T 2c34_A 14 DKWVDTHVGKTTEIHLKGNPTTGYMWTRVGFVGKDVLSDEILEVVCKYTPTPSSTPMVGVGGIYVVLVKP-RKRGHH 89 (116)
T ss_dssp CCCEEECSSCCEEEEEECCTTSSCEEEETTCTTSSCCCCSSEEEEEEEECCCCSSSSSCCCCEEEEEEEE-CSSSSE
T ss_pred CcEEEEcCCCEEEEEeCCCCCCCcEEEEecCCCcccccccccEEEEeEEeCCCCCCCcCCCceEEEEEEE-eCCceE
Confidence 45799999999999999765444443333210000001112100 0 1124557788889985 567763
No 166
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=20.55 E-value=79 Score=24.57 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=36.5
Q ss_pred EeCCcEEEEEEEecCCCCeeeEEEeCc--eeEEEeecCccceeeEEeEEEEccCceEEEEEEeCC--CCcceEEEEee
Q 009054 209 VEQGKTYRFRISNVGLQHSLNFRIQGH--KMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQ--PPQDFYIAVST 282 (545)
Q Consensus 209 v~~G~~~rlRliNa~~~~~~~~~i~gh--~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~--~~g~y~~~~~~ 282 (545)
-+|||++++|++--..... . ..+- .+++...+|..+.- ..........++.-+.++. ..|.|.+++..
T Consensus 13 YrPGetV~~~~~~~~~~~~-p--~~~~~~~v~l~dp~g~~v~~---~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~ 84 (102)
T 2p9r_A 13 YKPGQTVKFRVVSMDENFH-P--LNELIPLVYIQDPKGNRIAQ---WQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQK 84 (102)
T ss_dssp ECTTCEEEEEEEEECGGGC-B--CCCEEEEEEEECTTSCEEEE---EEEEECBTTEEEEEEECCSSCCCEEEEEEEEC
T ss_pred cCCCCEEEEEEEEECCCCc-C--CCCCceEEEEECCCCCEEEE---EEeecCCCCEEEEEEECCCCCCCeeEEEEEEE
Confidence 6899999999775433211 1 1111 34455555553321 1122233445666666654 35899999874
No 167
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=20.02 E-value=3.6e+02 Score=22.03 Aligned_cols=65 Identities=11% Similarity=0.110 Sum_probs=43.4
Q ss_pred EEeCCcEE--EEEEEecCCCCeeeEEEeCceeEEEeecCccceeeEEeEEEEccCceEEEEEEeCC-CCcceEEEEe
Q 009054 208 TVEQGKTY--RFRISNVGLQHSLNFRIQGHKMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTMDQ-PPQDFYIAVS 281 (545)
Q Consensus 208 ~v~~G~~~--rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~-~~g~y~~~~~ 281 (545)
.+.+|+.+ +..+-|.|....-.+.+ .++ .||..+. ...+.|++|+.-.|-+.... .+|.|.+.+.
T Consensus 28 ~v~~G~~~ti~vtV~N~G~~~a~~~~V-----~ly-vng~~v~---t~~v~La~G~s~tv~f~~~~~~~G~~~v~Av 95 (127)
T 3idu_A 28 VVGVNKLAEYEVHVKNLGGIGVPSTKV-----RVY-INGTLYK---NWTVSLGPKEEKVLTFNWTPTQEGMYRINAT 95 (127)
T ss_dssp EECTTCCEEEEEEEEECSSSCEEEEEE-----EEE-ETTEEEE---EEEEEECTTCEEEEEEEECCSSCEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCccCCcEE-----EEE-ECCEEEe---eEEeccCCCCeEEEEEEEEcCCCcEEEEEEE
Confidence 67888877 55688999866433332 222 2665443 23457999999888887653 5788988875
Done!