BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009055
         (545 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q92HF4|NUSA_RICCN Transcription elongation protein NusA OS=Rickettsia conorii (strain
           ATCC VR-613 / Malish 7) GN=nusA PE=3 SV=1
          Length = 503

 Score = 37.0 bits (84), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 427 DVEDLTGDI-----FDSIHMISSSHASTLDRLYAWERKLYDEVKASEMIRREYDSKCRIL 481
           DVE++ G +     F+S+  I+SS  STL R+  +E +L  E+K   +   +  ++ +I+
Sbjct: 370 DVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYVDLKNE-KII 428

Query: 482 RQLESKGVSSHKID 495
           ++LE  GV    ID
Sbjct: 429 KKLEDLGVEQELID 442


>sp|Q9ZCZ7|NUSA_RICPR Transcription elongation protein NusA OS=Rickettsia prowazekii
           (strain Madrid E) GN=nusA PE=3 SV=1
          Length = 503

 Score = 36.2 bits (82), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 427 DVEDLTGDI-----FDSIHMISSSHASTLDRLYAWERKLYDEVKASEMIRREYDSKCRIL 481
           DVE++ G +     F+S+  I+SS  STL R+  +E +L  E+K   +   +  ++ +I+
Sbjct: 370 DVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAIHYVDLKNE-KII 428

Query: 482 RQLESKGVSSHKID 495
           ++LE  GV    ID
Sbjct: 429 KKLEELGVEQELID 442


>sp|A4FPL9|RS3_SACEN 30S ribosomal protein S3 OS=Saccharopolyspora erythraea (strain
           NRRL 23338) GN=rpsC PE=3 SV=1
          Length = 298

 Score = 34.7 bits (78), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 446 HASTLDRLYAWERKLYDEVKASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVK-DL 504
           H   L     W+ + Y + + SE +  +   + R+ R +E  G+S  +I++TR  V+ D+
Sbjct: 8   HGFRLGITTDWKSRWYADKQYSEYVAEDVKIRRRLSRGMERAGISKVEIERTRERVRVDI 67

Query: 505 H-SRIKVAIHR----IDSISKRIEELRDKELQPQL 534
           H +R  + I R     D I   +E+L  K++Q  +
Sbjct: 68  HTARPGIVIGRRGAEADRIRGSLEKLTGKQVQLNI 102


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.127    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,096,522
Number of Sequences: 539616
Number of extensions: 9279738
Number of successful extensions: 40941
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 515
Number of HSP's that attempted gapping in prelim test: 38421
Number of HSP's gapped (non-prelim): 2049
length of query: 545
length of database: 191,569,459
effective HSP length: 122
effective length of query: 423
effective length of database: 125,736,307
effective search space: 53186457861
effective search space used: 53186457861
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)