Query 009055
Match_columns 545
No_of_seqs 165 out of 216
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 19:52:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04782 DUF632: Protein of un 100.0 7.8E-64 1.7E-68 513.3 16.6 180 328-543 1-180 (312)
2 PF04783 DUF630: Protein of un 100.0 9.9E-29 2.1E-33 197.3 7.8 60 1-60 1-60 (60)
3 cd07307 BAR The Bin/Amphiphysi 74.3 59 0.0013 29.6 11.7 94 447-540 79-176 (194)
4 smart00721 BAR BAR domain. 70.2 40 0.00087 32.8 10.1 78 462-539 138-217 (239)
5 cd07673 F-BAR_FCHO2 The F-BAR 69.5 45 0.00097 34.5 10.7 84 448-540 117-200 (269)
6 cd07651 F-BAR_PombeCdc15_like 67.9 51 0.0011 33.0 10.5 70 466-540 122-200 (236)
7 PRK11546 zraP zinc resistance 65.3 19 0.0004 34.4 6.3 50 469-527 54-103 (143)
8 cd07648 F-BAR_FCHO The F-BAR ( 65.0 84 0.0018 31.9 11.5 68 467-539 125-192 (261)
9 KOG1924 RhoA GTPase effector D 61.6 69 0.0015 38.3 11.0 37 326-362 744-780 (1102)
10 PF03114 BAR: BAR domain; Int 60.3 1.3E+02 0.0028 28.5 11.3 85 449-541 119-210 (229)
11 cd07596 BAR_SNX The Bin/Amphip 52.3 79 0.0017 30.1 8.4 74 468-541 120-201 (218)
12 KOG2675 Adenylate cyclase-asso 50.7 42 0.0009 37.4 6.8 26 36-61 183-208 (480)
13 PF12408 DUF3666: Ribose-5-pho 49.0 13 0.00027 29.4 1.9 26 326-351 4-29 (48)
14 KOG2008 BTK-associated SH3-dom 48.5 83 0.0018 33.9 8.3 81 445-528 149-233 (426)
15 cd07686 F-BAR_Fer The F-BAR (F 43.8 2.6E+02 0.0055 28.8 10.9 52 446-499 7-62 (234)
16 cd07647 F-BAR_PSTPIP The F-BAR 43.7 1.8E+02 0.0039 29.2 9.8 75 444-519 81-173 (239)
17 cd07674 F-BAR_FCHO1 The F-BAR 41.6 3.3E+02 0.0071 27.9 11.4 67 466-539 124-192 (261)
18 KOG1924 RhoA GTPase effector D 40.9 62 0.0013 38.7 6.5 23 337-359 872-894 (1102)
19 cd07659 BAR_PICK1 The Bin/Amph 39.2 1.1E+02 0.0024 31.1 7.2 79 464-542 105-197 (215)
20 COG1579 Zn-ribbon protein, pos 38.7 1.5E+02 0.0032 30.7 8.2 32 496-527 86-117 (239)
21 PF09241 Herp-Cyclin: Herpesvi 38.3 17 0.00038 31.8 1.3 13 527-539 18-30 (106)
22 PF02970 TBCA: Tubulin binding 37.3 2.6E+02 0.0057 24.4 8.5 54 471-524 20-80 (90)
23 PF09325 Vps5: Vps5 C terminal 36.2 1.6E+02 0.0035 28.8 7.9 75 468-542 138-220 (236)
24 PF06404 PSK: Phytosulfokine p 35.9 17 0.00037 31.4 0.9 12 30-42 63-74 (81)
25 PF12325 TMF_TATA_bd: TATA ele 35.4 2.6E+02 0.0056 25.9 8.6 85 444-528 19-104 (120)
26 PF06989 BAALC_N: BAALC N-term 34.7 17 0.00036 28.7 0.6 11 1-11 1-11 (53)
27 COG1340 Uncharacterized archae 34.6 1.5E+02 0.0033 31.5 7.7 61 455-518 131-191 (294)
28 TIGR03545 conserved hypothetic 32.5 1.8E+02 0.004 33.4 8.6 75 459-537 182-256 (555)
29 cd07655 F-BAR_PACSIN The F-BAR 31.9 4.2E+02 0.0091 27.1 10.4 18 466-483 134-151 (258)
30 cd07676 F-BAR_FBP17 The F-BAR 30.9 3.8E+02 0.0082 27.6 9.8 95 446-541 98-215 (253)
31 PF10368 YkyA: Putative cell-w 29.3 1.1E+02 0.0023 30.6 5.4 85 445-541 36-124 (204)
32 PF06600 DUF1140: Protein of u 29.1 39 0.00084 30.5 2.0 16 448-463 73-88 (107)
33 PF07445 priB_priC: Primosomal 28.7 3.6E+02 0.0077 26.2 8.8 67 444-525 105-171 (173)
34 cd07672 F-BAR_PSTPIP2 The F-BA 28.1 5.9E+02 0.013 26.0 10.6 69 450-518 91-187 (240)
35 cd07627 BAR_Vps5p The Bin/Amph 27.9 2.5E+02 0.0053 27.9 7.7 75 468-542 118-200 (216)
36 KOG3470 Beta-tubulin folding c 27.3 3.7E+02 0.008 24.7 7.8 70 447-527 12-89 (107)
37 PF05276 SH3BP5: SH3 domain-bi 27.2 2.4E+02 0.0053 29.0 7.7 36 493-528 192-227 (239)
38 PF08581 Tup_N: Tup N-terminal 27.0 1.5E+02 0.0032 25.6 5.2 39 446-484 34-72 (79)
39 cd07671 F-BAR_PSTPIP1 The F-BA 26.9 5.9E+02 0.013 26.0 10.4 66 450-518 90-172 (242)
40 cd07675 F-BAR_FNBP1L The F-BAR 26.9 4.5E+02 0.0097 27.3 9.5 75 466-541 128-214 (252)
41 PF12116 SpoIIID: Stage III sp 26.0 60 0.0013 28.3 2.5 33 446-482 37-69 (82)
42 TIGR00383 corA magnesium Mg(2+ 25.9 4.8E+02 0.01 26.9 9.7 77 446-529 170-246 (318)
43 cd07679 F-BAR_PACSIN2 The F-BA 25.8 4.3E+02 0.0093 27.7 9.2 69 450-518 92-201 (258)
44 PF05529 Bap31: B-cell recepto 24.8 6E+02 0.013 24.5 9.6 77 445-526 112-188 (192)
45 cd07623 BAR_SNX1_2 The Bin/Amp 24.8 3.1E+02 0.0067 27.4 7.8 54 469-523 127-180 (224)
46 COG5019 CDC3 Septin family pro 22.5 1.5E+02 0.0033 32.5 5.4 40 449-488 329-368 (373)
47 cd07649 F-BAR_GAS7 The F-BAR ( 22.1 6.6E+02 0.014 25.6 9.6 63 451-513 89-175 (233)
48 KOG2398 Predicted proline-seri 21.3 4.8E+02 0.01 30.5 9.4 85 449-533 76-181 (611)
49 PF06005 DUF904: Protein of un 20.9 1.4E+02 0.003 25.2 3.8 29 500-528 5-33 (72)
50 COG0172 SerS Seryl-tRNA synthe 20.7 6.5E+02 0.014 28.3 9.8 79 445-525 23-101 (429)
51 TIGR02132 phaR_Bmeg polyhydrox 20.6 4.5E+02 0.0097 26.3 7.6 69 470-539 91-171 (189)
52 TIGR03658 IsdH_HarA haptoglobi 20.4 1.4E+02 0.003 34.4 4.6 29 456-484 490-522 (895)
53 cd07600 BAR_Gvp36 The Bin/Amph 20.3 7E+02 0.015 25.7 9.4 80 455-540 137-223 (242)
54 PF08629 PDE8: PDE8 phosphodie 20.2 16 0.00034 28.9 -1.8 19 1-19 1-19 (52)
No 1
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=100.00 E-value=7.8e-64 Score=513.31 Aligned_cols=180 Identities=52% Similarity=0.808 Sum_probs=159.4
Q ss_pred cHHHHHHHHHHHHHHHhccCCcchhhhhcccCCCCcccccccCCcchhhhhhhhcccCCCCCCCCCCccccceeeeeecc
Q 009055 328 DFFSSMKDIELLFIKASDSGKEVPRMLEANKLHFRPIFEEKDSDSMASTILKACFSCGEDPPQVQEEPVQTDVKYLTWHR 407 (545)
Q Consensus 328 dl~ev~keIe~~F~rAs~sG~eVs~mLEa~k~~~~~~~~~~~~~~~~s~~~~~~~sc~~~~~~~~~~~~~~~~~~ltw~r 407 (545)
||++||||||++|+|||+||+|||+||||+|++|++.+..... ......++++.++|+|
T Consensus 1 dl~ev~kei~~~F~kAs~sg~eVs~lLE~~k~~~~~~~~~~~~---------------------~~~~s~~~~~~~~w~~ 59 (312)
T PF04782_consen 1 DLLEVVKEIDDYFLKASESGKEVSRLLEAGKIHYHSNFSDLKG---------------------KVDHSSRVLSPISWSR 59 (312)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCcccccccc---------------------cccchhhhccccccCC
Confidence 7999999999999999999999999999999999988765211 0011234668899998
Q ss_pred cccCCCCCCCCCCCCCCCcccccccCCcccccccccCchhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhc
Q 009055 408 TTSSRSSSSRNPLGANSKDDVEDLTGDIFDSIHMISSSHASTLDRLYAWERKLYDEVKASEMIRREYDSKCRILRQLESK 487 (545)
Q Consensus 408 s~ss~ssss~~~~~~~~~~d~~~~~~~~~~~~~~~sgshsSTLdrLyAWEKKLY~EVKa~E~~R~~ydKKc~~Lr~qd~k 487 (545)
+++|+. ....++++++.||++|+||||||||||||||||+|||++|+||++|||||++||+||+|
T Consensus 60 s~~s~~---------------~~~~~~~~~~~~~~~gshssTLdkLyaWEKKLY~EVKa~E~~r~~yeKK~~~Lr~~d~k 124 (312)
T PF04782_consen 60 SSSSRI---------------SNSDSDFDEEECMGSGSHSSTLDKLYAWEKKLYDEVKAEEKLRIEYEKKCKQLRKQDAK 124 (312)
T ss_pred CCCCcc---------------cccccCcCcccCcccchHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhC
Confidence 876641 11233456778999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHhhhcc
Q 009055 488 GVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIEGYAF 543 (545)
Q Consensus 488 Gad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~kLRDeEL~PQL~ELi~GL~~ 543 (545)
|+|+.+|||||++|++|+|||+|+||+|++||++|+|||||||||||+|||+||+.
T Consensus 125 g~~~~kidkTra~v~~L~tri~Vaiq~v~siS~~I~kLRDeEL~PQL~eLi~Gl~~ 180 (312)
T PF04782_consen 125 GADSSKIDKTRASVKDLHTRIRVAIQSVDSISKRIEKLRDEELYPQLVELIQGLMR 180 (312)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999973
No 2
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=99.95 E-value=9.9e-29 Score=197.34 Aligned_cols=60 Identities=55% Similarity=0.927 Sum_probs=58.9
Q ss_pred CCCCcccccchHHHHHhHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHhhccCC
Q 009055 1 MGVSSSKLEEDKALQLCRERKKFVRQALDGRCSLAATHVMYVQSLRNTGTALRKFVEPEG 60 (545)
Q Consensus 1 MGc~~Sk~d~~~av~lCreR~~~~k~av~~R~~laaaH~~Y~~SL~~vg~aL~~f~~~~~ 60 (545)
|||++||+|++|||+||||||+|||+||++||+||+||++|+||||+||.||++|+++|+
T Consensus 1 MGC~~SK~d~eeaV~~CkeRkr~~k~Av~~R~~lAaaH~aY~~SLr~~g~aL~~F~~~et 60 (60)
T PF04783_consen 1 MGCSQSKLDDEEAVSLCKERKRLMKQAVDARYALAAAHAAYIQSLRNVGAALRQFAEGET 60 (60)
T ss_pred CCCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999999873
No 3
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=74.30 E-value=59 Score=29.57 Aligned_cols=94 Identities=19% Similarity=0.276 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHhhhhcCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 009055 447 ASTLDRLYAWERKLYDEV----KASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRI 522 (545)
Q Consensus 447 sSTLdrLyAWEKKLY~EV----Ka~E~~R~~ydKKc~~Lr~qd~kGad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I 522 (545)
..-++-|-.|-++.+..| |.-++.|..||+....+.++-.++.+..++..+...+.....+..-.-.-+-..-..+
T Consensus 79 ~~v~~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~ 158 (194)
T cd07307 79 NKVIEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLNKL 158 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466666665554444 4678999999999999998887765666666666666665555554444443333444
Q ss_pred hhhhccchhhHHHHHHhh
Q 009055 523 EELRDKELQPQLEDLIEG 540 (545)
Q Consensus 523 ~kLRDeEL~PQL~ELi~G 540 (545)
..-|-.++.+.|..+++.
T Consensus 159 ~~~~~~~~~~~L~~~~~~ 176 (194)
T cd07307 159 EEKRKELFLSLLLSFIEA 176 (194)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 444445677777777764
No 4
>smart00721 BAR BAR domain.
Probab=70.20 E-value=40 Score=32.80 Aligned_cols=78 Identities=17% Similarity=0.147 Sum_probs=55.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhhhcCCCc--hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHh
Q 009055 462 DEVKASEMIRREYDSKCRILRQLESKGVSS--HKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIE 539 (545)
Q Consensus 462 ~EVKa~E~~R~~ydKKc~~Lr~qd~kGad~--~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~kLRDeEL~PQL~ELi~ 539 (545)
+.+|--+..|+.||..-..|.++-.++... .++.+++..++....+..-.-.-+-.---.+...|.+.+.|+|..|+.
T Consensus 138 ~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~ 217 (239)
T smart00721 138 KARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIE 217 (239)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 445678899999999988887665543322 177777777777777776655555555556677777778999998875
No 5
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=69.50 E-value=45 Score=34.47 Aligned_cols=84 Identities=14% Similarity=0.249 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhcCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhc
Q 009055 448 STLDRLYAWERKLYDEVKASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRD 527 (545)
Q Consensus 448 STLdrLyAWEKKLY~EVKa~E~~R~~ydKKc~~Lr~qd~kGad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~kLRD 527 (545)
.+++.+..| .+++ ++-++-|..|+.+|+..-++-.-++....|||++.-+++....+..+++..+.+-. +=
T Consensus 117 ~~~~~~~~~-~~~~---~~~~KaK~~Y~~~c~e~e~~~~~~~t~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~-----~~ 187 (269)
T cd07673 117 GTLEAVQNI-QSIT---QALQKSKENYNAKCLEQERLKKEGATQREIEKAAVKSKKATESYKLYVEKYALAKA-----DF 187 (269)
T ss_pred hHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 456666666 4444 45567799999999877655445566677788777777777776666666554421 22
Q ss_pred cchhhHHHHHHhh
Q 009055 528 KELQPQLEDLIEG 540 (545)
Q Consensus 528 eEL~PQL~ELi~G 540 (545)
++-+|+..+-+|-
T Consensus 188 ~~~m~~~~~~~Q~ 200 (269)
T cd07673 188 EQKMTETAQKFQD 200 (269)
T ss_pred HHHHHHHHHHHHH
Confidence 4556666655553
No 6
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=67.85 E-value=51 Score=33.00 Aligned_cols=70 Identities=10% Similarity=0.185 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcC--CCchhhHH-------HHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchhhHHHH
Q 009055 466 ASEMIRREYDSKCRILRQLESKG--VSSHKIDK-------TRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLED 536 (545)
Q Consensus 466 a~E~~R~~ydKKc~~Lr~qd~kG--ad~~kiDk-------TRa~Vk~L~SrI~Vaiq~vdsiS~~I~kLRDeEL~PQL~E 536 (545)
+-++.|..|++.|..|+.+-..+ .....++| ++..+......+.++|+....+-. +=++-||.+++
T Consensus 122 ~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~-----~~~~~~~~~~~ 196 (236)
T cd07651 122 YLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNE-----IWNREWKAALD 196 (236)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 55788999999998887655432 12223444 444555555666666665555432 12344577666
Q ss_pred HHhh
Q 009055 537 LIEG 540 (545)
Q Consensus 537 Li~G 540 (545)
.+|=
T Consensus 197 ~~Q~ 200 (236)
T cd07651 197 DFQD 200 (236)
T ss_pred HHHH
Confidence 6654
No 7
>PRK11546 zraP zinc resistance protein; Provisional
Probab=65.27 E-value=19 Score=34.38 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhc
Q 009055 469 MIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRD 527 (545)
Q Consensus 469 ~~R~~ydKKc~~Lr~qd~kGad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~kLRD 527 (545)
+|+..|..+...||. +|=.-|+.++.|.+.=...-+.|.+.+++|..||+
T Consensus 54 ~I~~~f~~~t~~LRq---------qL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~ 103 (143)
T PRK11546 54 KIHNDFYAQTSALRQ---------QLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQ 103 (143)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 444555555555554 23334444444444444444555555555555554
No 8
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=65.00 E-value=84 Score=31.86 Aligned_cols=68 Identities=16% Similarity=0.307 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHh
Q 009055 467 SEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIE 539 (545)
Q Consensus 467 ~E~~R~~ydKKc~~Lr~qd~kGad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~kLRDeEL~PQL~ELi~ 539 (545)
-++-|..|+..|..+.++...+.....++|++.-+++....+.-+++....+-..- ++-+|+..+-+|
T Consensus 125 l~KaK~~Y~~~c~e~e~~~~~~~s~k~~eK~~~K~~ka~~~Y~~~v~~~~~~~~~~-----~~~m~~~~~~~Q 192 (261)
T cd07648 125 LQKAKEAYHARCLELERLRRENASPKEIEKAEAKLKKAQDEYKALVEKYNNIRADF-----ETKMTDSCKRFQ 192 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 36778999999999998877665556666776666666655555555444333332 244555554444
No 9
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=61.63 E-value=69 Score=38.29 Aligned_cols=37 Identities=11% Similarity=0.227 Sum_probs=23.3
Q ss_pred CccHHHHHHHHHHHHHHHhccCCcchhhhhcccCCCC
Q 009055 326 SKDFFSSMKDIELLFIKASDSGKEVPRMLEANKLHFR 362 (545)
Q Consensus 326 ~kdl~ev~keIe~~F~rAs~sG~eVs~mLEa~k~~~~ 362 (545)
....+.-+.+|+.+|.--++.-.=|.+|+++.+++.+
T Consensus 744 e~E~l~~L~e~Kaeye~l~e~EQF~vvm~~vkrL~pR 780 (1102)
T KOG1924|consen 744 EQEQLNKLSELKAEYEDLPEPEQFVVVMSQVKRLRPR 780 (1102)
T ss_pred CHHHHHHHHHHHHhccCCCCHHHHhHHHhhccccChh
Confidence 3455566666666666666666666777777666543
No 10
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=60.27 E-value=1.3e+02 Score=28.45 Aligned_cols=85 Identities=26% Similarity=0.410 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHhhhhcCCC---chhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 009055 449 TLDRLYAWERKLYDE----VKASEMIRREYDSKCRILRQLESKGVS---SHKIDKTRAVVKDLHSRIKVAIHRIDSISKR 521 (545)
Q Consensus 449 TLdrLyAWEKKLY~E----VKa~E~~R~~ydKKc~~Lr~qd~kGad---~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~ 521 (545)
-++.|--|= ++|++ +|.-+..++.||+-...+.++..++.- ..+++.++..-..+...+...+..
T Consensus 119 vi~pl~~~~-~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~~~~l~~a~~~f~~~~~~l~~~l~~------- 190 (229)
T PF03114_consen 119 VIDPLKEFL-KEFKEIKKLIKKREKKRLDYDSARSKLEKLRKKKSKSSKEEKLEEAKEEFEALNEELKEELPK------- 190 (229)
T ss_dssp THHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSBTHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 334444444 55554 446788899999999999988865553 466677777776666666665553
Q ss_pred hhhhhccchhhHHHHHHhhh
Q 009055 522 IEELRDKELQPQLEDLIEGY 541 (545)
Q Consensus 522 I~kLRDeEL~PQL~ELi~GL 541 (545)
|...|.+-|.++|..+|...
T Consensus 191 l~~~~~~~l~~~l~~~i~~q 210 (229)
T PF03114_consen 191 LFAKRQDILEPCLQSFIEAQ 210 (229)
T ss_dssp HHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566666778888877653
No 11
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.25 E-value=79 Score=30.08 Aligned_cols=74 Identities=20% Similarity=0.347 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcCC-CchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhh-------hhhccchhhHHHHHHh
Q 009055 468 EMIRREYDSKCRILRQLESKGV-SSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIE-------ELRDKELQPQLEDLIE 539 (545)
Q Consensus 468 E~~R~~ydKKc~~Lr~qd~kGa-d~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~-------kLRDeEL~PQL~ELi~ 539 (545)
+.+.....+|-.+|-++...+. ...+|++.+..|..++.++..+..-.+.|+.+|. +-|..+|-.-|.++++
T Consensus 120 ~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~ 199 (218)
T cd07596 120 QSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFAR 199 (218)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566777777777776664 7789999999999999999999999998887663 4466666666666665
Q ss_pred hh
Q 009055 540 GY 541 (545)
Q Consensus 540 GL 541 (545)
..
T Consensus 200 ~q 201 (218)
T cd07596 200 LQ 201 (218)
T ss_pred HH
Confidence 43
No 12
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=50.67 E-value=42 Score=37.42 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.7
Q ss_pred HhHHHHHHHHHHHHHHHHHhhccCCC
Q 009055 36 ATHVMYVQSLRNTGTALRKFVEPEGP 61 (545)
Q Consensus 36 aaH~~Y~~SL~~vg~aL~~f~~~~~~ 61 (545)
.-|+.++.++..+=.-|+.|+..+.+
T Consensus 183 ~~hveWvKa~l~l~~eL~~YVk~hht 208 (480)
T KOG2675|consen 183 PRHVEWVKAYLALFLELQAYVKEHHT 208 (480)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35999999999999999999987743
No 13
>PF12408 DUF3666: Ribose-5-phosphate isomerase ; InterPro: IPR022133 This domain family is found in bacteria, and is approximately 50 amino acids in length. The family is found in association with PF02502 from PFAM. There are two completely conserved residues (D and F) that may be functionally important. ; PDB: 3ONO_A 3C5Y_N 2PPW_A.
Probab=49.02 E-value=13 Score=29.38 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=19.1
Q ss_pred CccHHHHHHHHHHHHHHHhccCCcch
Q 009055 326 SKDFFSSMKDIELLFIKASDSGKEVP 351 (545)
Q Consensus 326 ~kdl~ev~keIe~~F~rAs~sG~eVs 351 (545)
.|||++++|+||..|+|.+=+|....
T Consensus 4 ~k~ll~iLk~iDqdLvK~AisGe~Fq 29 (48)
T PF12408_consen 4 YKDLLDILKAIDQDLVKTAISGERFQ 29 (48)
T ss_dssp S--HHHHHHHS-HHHHHHHT-SHHHH
T ss_pred hhhHHHHHHHhCHHHHHHHhccHHHH
Confidence 47999999999999999999886543
No 14
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=48.46 E-value=83 Score=33.89 Aligned_cols=81 Identities=27% Similarity=0.309 Sum_probs=55.5
Q ss_pred chhhHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHhhhhcCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 009055 445 SHASTLDRLYAWERKLYDEVK----ASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISK 520 (545)
Q Consensus 445 shsSTLdrLyAWEKKLY~EVK----a~E~~R~~ydKKc~~Lr~qd~kGad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~ 520 (545)
-|+||.-|+.+-+-+|-+=.| |--+-|.-|++|...-+.+++-- ..|+--.+.|+-----+..+++.++.||-
T Consensus 149 ~Has~a~~~l~l~~~~R~~ek~n~~AIkKSrpYfE~k~~~t~~le~qk---~tv~~Leaev~~~K~~Y~~slrnLE~ISd 225 (426)
T KOG2008|consen 149 VHASTAARYLALMGRMRQLEKKNKRAIKKSRPYFELKAKYTVQLEQQK---KTVDDLEAEVTLAKGEYKMSLRNLEMISD 225 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhcchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 399999999988866655433 33455678888887776655321 13444444444444456788999999999
Q ss_pred Hhhhhhcc
Q 009055 521 RIEELRDK 528 (545)
Q Consensus 521 ~I~kLRDe 528 (545)
+|+.=|-.
T Consensus 226 ~IHeeRss 233 (426)
T KOG2008|consen 226 EIHEERSS 233 (426)
T ss_pred HHHHhhhh
Confidence 99987764
No 15
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=43.78 E-value=2.6e+02 Score=28.76 Aligned_cols=52 Identities=29% Similarity=0.392 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHhhhhcCCCchhhHHHHH
Q 009055 446 HASTLDRLYAWERKLYDEVKA----SEMIRREYDSKCRILRQLESKGVSSHKIDKTRA 499 (545)
Q Consensus 446 hsSTLdrLyAWEKKLY~EVKa----~E~~R~~ydKKc~~Lr~qd~kGad~~kiDkTRa 499 (545)
| -.|.||-.||-+|-+-|+. .-+|-.+|-++...|-+++.++.... ++-+..
T Consensus 7 ~-e~l~k~q~~ei~lLE~i~~f~~eRakiEkEYA~~L~~L~kq~~kk~~~~-~~~~s~ 62 (234)
T cd07686 7 H-EALLKLQDWELRLLETVKKFMALRVKSDKEYASTLQNLCNQVDKESTSQ-LDYVSN 62 (234)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccc-ccchhh
Confidence 5 8899999999999999884 34555689999999999986655332 344443
No 16
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=43.66 E-value=1.8e+02 Score=29.24 Aligned_cols=75 Identities=16% Similarity=0.203 Sum_probs=42.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHH------------------hhHHHHHHHHHHHHHHHhhhhcCCCchhhHHHHHHHHHHh
Q 009055 444 SSHASTLDRLYAWERKLYDEVK------------------ASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLH 505 (545)
Q Consensus 444 gshsSTLdrLyAWEKKLY~EVK------------------a~E~~R~~ydKKc~~Lr~qd~kGad~~kiDkTRa~Vk~L~ 505 (545)
.++..-+++|-.|-+++.++.| .-++.|..|+++|+.+......-.... -+.+...+++|.
T Consensus 81 ~~L~~~v~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~-~~~~~ke~eK~~ 159 (239)
T cd07647 81 QSLREEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSS-SGAQPKEAEKLK 159 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHH
Confidence 3444455667777666666643 556779999999999865421100000 013445566666
Q ss_pred hHHHHHHHHHHHHH
Q 009055 506 SRIKVAIHRIDSIS 519 (545)
Q Consensus 506 SrI~Vaiq~vdsiS 519 (545)
.|+.-+.+.++..-
T Consensus 160 ~K~~k~~~~~~~a~ 173 (239)
T cd07647 160 KKAAQCKTSAEEAD 173 (239)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666555554433
No 17
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=41.60 E-value=3.3e+02 Score=27.88 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhcc--chhhHHHHHHh
Q 009055 466 ASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDK--ELQPQLEDLIE 539 (545)
Q Consensus 466 a~E~~R~~ydKKc~~Lr~qd~kGad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~kLRDe--EL~PQL~ELi~ 539 (545)
+-++-|..|++.|+...+.-.-|. ++..|+++..|..-|-+.+...-..-++.|-. +-+|+..+-+|
T Consensus 124 ~l~kaK~~Y~~~cke~e~a~~~~~-------s~k~leK~~~K~~ka~~~y~~~~~ky~~~~~~~~~~m~~~~~~~Q 192 (261)
T cd07674 124 HLQKSRENYHSKCVEQERLRREGV-------PQKELEKAELKTKKAAESLRGSVEKYNRARGDFEQKMLESAQKFQ 192 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345679999999998866543333 44445555555555554444444444433321 33455555444
No 18
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=40.86 E-value=62 Score=38.66 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=10.9
Q ss_pred HHHHHHHhccCCcchhhhhcccC
Q 009055 337 ELLFIKASDSGKEVPRMLEANKL 359 (545)
Q Consensus 337 e~~F~rAs~sG~eVs~mLEa~k~ 359 (545)
|+-|=.+..--.|+.-+-+++|.
T Consensus 872 e~kypd~l~F~ddl~hv~kaSrv 894 (1102)
T KOG1924|consen 872 EEKYPDILKFPDDLEHVEKASRV 894 (1102)
T ss_pred HHhChhhhcchhhHHHHHhhccc
Confidence 33444444444455555555544
No 19
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=39.20 E-value=1.1e+02 Score=31.11 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=52.5
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhhcCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhcc--------------c
Q 009055 464 VKASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDK--------------E 529 (545)
Q Consensus 464 VKa~E~~R~~ydKKc~~Lr~qd~kGad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~kLRDe--------------E 529 (545)
||--+..|++|+--|-.|+.++....+...+|-+-.-|+.-.-..+.-.+.-..--.+-.|||.+ -
T Consensus 105 ikkY~~ar~EY~ayc~kvkEmd~ee~~~~~~~e~l~rvetgnyeyrl~lRcrq~~r~kf~kLR~DV~vKlelLe~k~vk~ 184 (215)
T cd07659 105 IKKYADVKFEYLSYCLKVKEMDDEEYSYAALDEPLYRVETGNYEYRLILRCRQEARARFAKLRQDVLEKLELLDQKHVQD 184 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 66778899999999999999988777766666665555544444444444444444444555543 3
Q ss_pred hhhHHHHHHhhhc
Q 009055 530 LQPQLEDLIEGYA 542 (545)
Q Consensus 530 L~PQL~ELi~GL~ 542 (545)
++-||.-++.+++
T Consensus 185 i~~QL~~f~~ais 197 (215)
T cd07659 185 IVFQLQRFVSALS 197 (215)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777777664
No 20
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=38.74 E-value=1.5e+02 Score=30.67 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhc
Q 009055 496 KTRAVVKDLHSRIKVAIHRIDSISKRIEELRD 527 (545)
Q Consensus 496 kTRa~Vk~L~SrI~Vaiq~vdsiS~~I~kLRD 527 (545)
+|-...++|.-.|.++.+.+.+....|..|.+
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~ 117 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSLEDELAELME 117 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555544
No 21
>PF09241 Herp-Cyclin: Herpesviridae viral cyclin; InterPro: IPR015322 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry represents a domain found in a family of viral cyclins that specifically activate CDK6 of host cells to a very high degree []. This domain adopts a helical structure consisting of five alpha-helices, with one helix surrounded by the others.; PDB: 1XO2_A 1JOW_A 2F2C_A 2EUF_A 1BU2_A.
Probab=38.30 E-value=17 Score=31.80 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=10.3
Q ss_pred ccchhhHHHHHHh
Q 009055 527 DKELQPQLEDLIE 539 (545)
Q Consensus 527 DeEL~PQL~ELi~ 539 (545)
-|||||||.|+..
T Consensus 18 pe~~wpql~e~~s 30 (106)
T PF09241_consen 18 PEDFWPQLFEATS 30 (106)
T ss_dssp -GGGHHHHHHHHH
T ss_pred cHHHhHHHHHHHH
Confidence 4899999999853
No 22
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=37.25 E-value=2.6e+02 Score=24.36 Aligned_cols=54 Identities=15% Similarity=0.364 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhhhcCCCchh-------hHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q 009055 471 RREYDSKCRILRQLESKGVSSHK-------IDKTRAVVKDLHSRIKVAIHRIDSISKRIEE 524 (545)
Q Consensus 471 R~~ydKKc~~Lr~qd~kGad~~k-------iDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~k 524 (545)
..+.+.-..+|.++...|.|... ++.|+++|-+...||.-|+..+..+-..-+.
T Consensus 20 ~kE~~~q~~rle~~k~~~~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~ 80 (90)
T PF02970_consen 20 EKEVEEQEARLEKMKAEGEDEYDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEEEEG 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCcC
Confidence 34444444555555556766654 5778888999999999998888777444333
No 23
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=36.24 E-value=1.6e+02 Score=28.80 Aligned_cols=75 Identities=20% Similarity=0.357 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcC-CCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhh-------hhhccchhhHHHHHHh
Q 009055 468 EMIRREYDSKCRILRQLESKG-VSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIE-------ELRDKELQPQLEDLIE 539 (545)
Q Consensus 468 E~~R~~ydKKc~~Lr~qd~kG-ad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~-------kLRDeEL~PQL~ELi~ 539 (545)
+.+...++||-.++.++...| ....+++.....|..+..|+..+-+..+.|+..|. +-|..++-=-|.+++.
T Consensus 138 ~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~ 217 (236)
T PF09325_consen 138 QNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAE 217 (236)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777774 34589999999999999999999999999998764 4666777777777766
Q ss_pred hhc
Q 009055 540 GYA 542 (545)
Q Consensus 540 GL~ 542 (545)
+.+
T Consensus 218 ~~i 220 (236)
T PF09325_consen 218 SQI 220 (236)
T ss_pred HHH
Confidence 554
No 24
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=35.93 E-value=17 Score=31.35 Aligned_cols=12 Identities=42% Similarity=0.645 Sum_probs=10.1
Q ss_pred hhhHHHHhHHHHH
Q 009055 30 GRCSLAATHVMYV 42 (545)
Q Consensus 30 ~R~~laaaH~~Y~ 42 (545)
.|..|| ||.+||
T Consensus 63 ~RRtL~-AHlDYI 74 (81)
T PF06404_consen 63 MRRTLA-AHLDYI 74 (81)
T ss_pred HHHHHH-HHhhhe
Confidence 467788 999998
No 25
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=35.36 E-value=2.6e+02 Score=25.87 Aligned_cols=85 Identities=20% Similarity=0.270 Sum_probs=58.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHhhhhcCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 009055 444 SSHASTLDRLYAWERKLYDEVKASEMIRREYD-SKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRI 522 (545)
Q Consensus 444 gshsSTLdrLyAWEKKLY~EVKa~E~~R~~yd-KKc~~Lr~qd~kGad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I 522 (545)
..++++|-||=.-=--|=+|+..-+.-|-.-. .=++.++.-+...+....+++-+..+++|..|...+.+-+---+-++
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~v 98 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEV 98 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34556666554444445555555555554333 33344455555556667889999999999999999999999999999
Q ss_pred hhhhcc
Q 009055 523 EELRDK 528 (545)
Q Consensus 523 ~kLRDe 528 (545)
+.||.+
T Consensus 99 eEL~~D 104 (120)
T PF12325_consen 99 EELRAD 104 (120)
T ss_pred HHHHHH
Confidence 888874
No 26
>PF06989 BAALC_N: BAALC N-terminus; InterPro: IPR009728 This entry represents the mammalian BAALC proteins. BAALC (brain and acute leukaemia, cytoplasmic) is highly conserved among mammals, but is absent from lower organisms. Two isoforms are specifically expressed in neuroectoderm-derived tissues, but not in tumours or cancer cell lines of non-neural tissue origin. It has been shown that blasts from a subset of patients with acute leukaemia greatly overexpress eight different BAALC transcripts, resulting in five protein isoforms. Among patients with acute myeloid leukaemia, those overexpressing BAALC show distinctly poor prognosis, pointing to a key role of the BAALC products in leukaemia. It has been suggested that BAALC is a gene implicated in both neuroectodermal and hematopoietic cell functions [].; GO: 0005737 cytoplasm
Probab=34.69 E-value=17 Score=28.71 Aligned_cols=11 Identities=27% Similarity=0.435 Sum_probs=8.9
Q ss_pred CCCCcccccch
Q 009055 1 MGVSSSKLEED 11 (545)
Q Consensus 1 MGc~~Sk~d~~ 11 (545)
|||++|+.|.-
T Consensus 1 mgcggsradai 11 (53)
T PF06989_consen 1 MGCGGSRADAI 11 (53)
T ss_pred CCCCccccccc
Confidence 99999987753
No 27
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=34.56 E-value=1.5e+02 Score=31.52 Aligned_cols=61 Identities=20% Similarity=0.338 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhcCCCchhhHHHHHHHHHHhhHHHHHHHHHHHH
Q 009055 455 AWERKLYDEVKASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSI 518 (545)
Q Consensus 455 AWEKKLY~EVKa~E~~R~~ydKKc~~Lr~qd~kGad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsi 518 (545)
+||++|-++++. ++..|+..-++|..-..--.-...||+-+..-+++|-+|.-..+=++.+
T Consensus 131 e~E~~lvq~I~~---L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~ 191 (294)
T COG1340 131 EEERELVQKIKE---LRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEY 191 (294)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666654 5555554444444433333333345555555555555555444444333
No 28
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=32.52 E-value=1.8e+02 Score=33.40 Aligned_cols=75 Identities=15% Similarity=0.296 Sum_probs=58.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhhhcCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 009055 459 KLYDEVKASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDL 537 (545)
Q Consensus 459 KLY~EVKa~E~~R~~ydKKc~~Lr~qd~kGad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~kLRDeEL~PQL~EL 537 (545)
+.|+++-..+.+ .+|.++++.|+..+. .++..|-+....+++|...|.-..+.|.+....++..++ .|..|+-+|
T Consensus 182 ~~~~~Lp~~~~~-~~yk~~v~~i~~~~i--k~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~-~~~~~~~~l 256 (555)
T TIGR03545 182 KRKKDLPNKQDL-EEYKKRLEAIKKKDI--KNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKK-QLKADLAEL 256 (555)
T ss_pred HHHHhcCCchhH-HHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHH
Confidence 456677654444 479999999998432 456788899999999999999999999999999998874 455555554
No 29
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=31.88 E-value=4.2e+02 Score=27.10 Aligned_cols=18 Identities=17% Similarity=0.516 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 009055 466 ASEMIRREYDSKCRILRQ 483 (545)
Q Consensus 466 a~E~~R~~ydKKc~~Lr~ 483 (545)
.-++-|..|++.|+.+..
T Consensus 134 ~l~kaKk~Y~~~cke~e~ 151 (258)
T cd07655 134 KVEKAKKAYHAACKAEKS 151 (258)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356779999999998754
No 30
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.90 E-value=3.8e+02 Score=27.61 Aligned_cols=95 Identities=11% Similarity=0.180 Sum_probs=59.8
Q ss_pred hhhHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHHHhhhhcC--CCchhhHHHHHHHHHHhhHHHHHH
Q 009055 446 HASTLDRLYAWERKLYDEVK-----------ASEMIRREYDSKCRILRQLESKG--VSSHKIDKTRAVVKDLHSRIKVAI 512 (545)
Q Consensus 446 hsSTLdrLyAWEKKLY~EVK-----------a~E~~R~~ydKKc~~Lr~qd~kG--ad~~kiDkTRa~Vk~L~SrI~Vai 512 (545)
+..-+.++=.|-|.+|.+.. .-++.+..|++-|+.-...-.+- ++. .++-|++.++++..+.....
T Consensus 98 l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~-d~~~sk~~~eK~k~~~~~~~ 176 (253)
T cd07676 98 LTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDA-DINVTKADVEKARQQAQIRH 176 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccCCHHHHHHHHHHHHHHH
Confidence 44455567788888887653 45678888988887654333221 111 34567888888888888887
Q ss_pred HHHHHHHHH----hhh---h---hccchhhHHHHHHhhh
Q 009055 513 HRIDSISKR----IEE---L---RDKELQPQLEDLIEGY 541 (545)
Q Consensus 513 q~vdsiS~~----I~k---L---RDeEL~PQL~ELi~GL 541 (545)
|.++..-.. |++ + .=.|.-|++++.+|-|
T Consensus 177 ~~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~l 215 (253)
T cd07676 177 QMAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEM 215 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 777754322 222 2 2345678888888765
No 31
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=29.31 E-value=1.1e+02 Score=30.62 Aligned_cols=85 Identities=19% Similarity=0.265 Sum_probs=49.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHhhhhcCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 009055 445 SHASTLDRLYAWERKLYDEVKAS----EMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISK 520 (545)
Q Consensus 445 shsSTLdrLyAWEKKLY~EVKa~----E~~R~~ydKKc~~Lr~qd~kGad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~ 520 (545)
.-..+|.+|=.=+.+||+.+-.. -..... +..++ ...++.=+..++....-|.-+-.-+..+.+
T Consensus 36 ~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~---~~~~a---------~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~ 103 (204)
T PF10368_consen 36 EQQKKLNELEKKEQELYEQIIQLGKDDNDEVKK---LSDEA---------LKNVDEREKELKKEKEAIEKAKEEFKKAKK 103 (204)
T ss_dssp HHHHHHHHHHHHHHTTTTGG---G-SSHHHHHH---HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcchHHHHHH---HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777788887111 111111 11111 125666677788888888889999999999
Q ss_pred HhhhhhccchhhHHHHHHhhh
Q 009055 521 RIEELRDKELQPQLEDLIEGY 541 (545)
Q Consensus 521 ~I~kLRDeEL~PQL~ELi~GL 541 (545)
.|.+|.|+.+.-|+.+|+.-|
T Consensus 104 ~i~ki~d~~~k~qa~~l~~~~ 124 (204)
T PF10368_consen 104 YIDKIEDEKLKKQAKELNEAM 124 (204)
T ss_dssp -------HHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHH
Confidence 999999999999999998744
No 32
>PF06600 DUF1140: Protein of unknown function (DUF1140); InterPro: IPR009520 This entry is represented by Bacteriophage bIL286, Orf36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short, hypothetical phage and bacterial proteins. The function of this family is unknown.
Probab=29.06 E-value=39 Score=30.55 Aligned_cols=16 Identities=38% Similarity=0.922 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHH
Q 009055 448 STLDRLYAWERKLYDE 463 (545)
Q Consensus 448 STLdrLyAWEKKLY~E 463 (545)
--|||||-|-.||.+|
T Consensus 73 ~e~Dr~~~Ws~kLHQd 88 (107)
T PF06600_consen 73 AEIDRLFHWSSKLHQD 88 (107)
T ss_pred HHHHHHhhHHHHHHHH
Confidence 5689999999999987
No 33
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=28.66 E-value=3.6e+02 Score=26.23 Aligned_cols=67 Identities=19% Similarity=0.287 Sum_probs=46.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhcCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 009055 444 SSHASTLDRLYAWERKLYDEVKASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIE 523 (545)
Q Consensus 444 gshsSTLdrLyAWEKKLY~EVKa~E~~R~~ydKKc~~Lr~qd~kGad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~ 523 (545)
..+--.|-+.|-||++|.+=|...|.. |.. +....=-+....|--|+-|+.-+-+||+.|=..|+
T Consensus 105 ~~Lyq~L~~hqe~erRL~~mi~~~e~~----------l~~-----~~~~~~~~lq~ei~a~e~RL~RCr~Ai~~iE~~I~ 169 (173)
T PF07445_consen 105 HQLYQRLAQHQEYERRLLAMIQEREQQ----------LEQ-----AQSFEQQQLQQEILALEQRLQRCRQAIEKIEEQIQ 169 (173)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHh-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999998866653321 111 11111134555788899999999999999999998
Q ss_pred hh
Q 009055 524 EL 525 (545)
Q Consensus 524 kL 525 (545)
.+
T Consensus 170 ~~ 171 (173)
T PF07445_consen 170 RR 171 (173)
T ss_pred HH
Confidence 64
No 34
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=28.08 E-value=5.9e+02 Score=26.00 Aligned_cols=69 Identities=14% Similarity=0.264 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHH---------------hhHHHHHHHHHHHHHHHhhhhc---------CCCc----hhhHHHHHHH
Q 009055 450 LDRLYAWERKLYDEVK---------------ASEMIRREYDSKCRILRQLESK---------GVSS----HKIDKTRAVV 501 (545)
Q Consensus 450 LdrLyAWEKKLY~EVK---------------a~E~~R~~ydKKc~~Lr~qd~k---------Gad~----~kiDkTRa~V 501 (545)
|.++..|.|+-++.+. .-++-|..|++.|+.+..+... |.+. .|++|++..|
T Consensus 91 ~~~f~~~qk~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~~ke~~K~~~Kl~K~~~~~ 170 (240)
T cd07672 91 MEDFRERQKLARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVNVKQQEKLFAKLAQSKQNA 170 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 5778888887666554 2455689999999887654331 1111 3345555555
Q ss_pred HHHhhHHHHHHHHHHHH
Q 009055 502 KDLHSRIKVAIHRIDSI 518 (545)
Q Consensus 502 k~L~SrI~Vaiq~vdsi 518 (545)
.+-..++.-++..++.|
T Consensus 171 ~k~~~~Y~~~v~~l~~~ 187 (240)
T cd07672 171 EDADRLYMQNISVLDKI 187 (240)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555565555555544
No 35
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=27.89 E-value=2.5e+02 Score=27.89 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcCC-CchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhh-------hhhccchhhHHHHHHh
Q 009055 468 EMIRREYDSKCRILRQLESKGV-SSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIE-------ELRDKELQPQLEDLIE 539 (545)
Q Consensus 468 E~~R~~ydKKc~~Lr~qd~kGa-d~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~-------kLRDeEL~PQL~ELi~ 539 (545)
+.+....+||-.+|-++...|. -..||+.....|+.++.+...+-+..+.|+..|. +-|=.++--.|..+++
T Consensus 118 ~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e 197 (216)
T cd07627 118 QSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLE 197 (216)
T ss_pred HHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777765442 3579999999999999999999999999998874 3455566666777766
Q ss_pred hhc
Q 009055 540 GYA 542 (545)
Q Consensus 540 GL~ 542 (545)
|++
T Consensus 198 ~~i 200 (216)
T cd07627 198 SAI 200 (216)
T ss_pred HHH
Confidence 654
No 36
>KOG3470 consensus Beta-tubulin folding cofactor A [Posttranslational modification, protein turnover, chaperones]
Probab=27.26 E-value=3.7e+02 Score=24.66 Aligned_cols=70 Identities=27% Similarity=0.408 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHhhhhcCCCch-------hhHHHHHHHHHHhhHHHHHHHHHHHH
Q 009055 447 ASTLDRLYAWERKLY-DEVKASEMIRREYDSKCRILRQLESKGVSSH-------KIDKTRAVVKDLHSRIKVAIHRIDSI 518 (545)
Q Consensus 447 sSTLdrLyAWEKKLY-~EVKa~E~~R~~ydKKc~~Lr~qd~kGad~~-------kiDkTRa~Vk~L~SrI~Vaiq~vdsi 518 (545)
..|+.||- =|+-+| +||+.+| .|...|| ..|+|+. .++.||..|.+++.||.-+..-+.+|
T Consensus 12 t~vvkRlv-KE~~~Yekev~~ee-------akvakl~---~dg~d~ydlkkQeeVl~et~~mlPD~~~RL~~a~~DLe~~ 80 (107)
T KOG3470|consen 12 TGVVKRLV-KEVEYYEKEVKEEE-------AKVAKLK---DDGADPYDLKKQEEVLKETRMMLPDSQRRLRKAYEDLESI 80 (107)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHH-------HHHHHHH---hcCCChHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 45677763 244444 3555443 3444444 4555554 46779999999999999999999988
Q ss_pred HHHhhhhhc
Q 009055 519 SKRIEELRD 527 (545)
Q Consensus 519 S~~I~kLRD 527 (545)
...=+-+-+
T Consensus 81 l~~~~~~ee 89 (107)
T KOG3470|consen 81 LADEQYLEE 89 (107)
T ss_pred Hhcccchhc
Confidence 876444433
No 37
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=27.25 E-value=2.4e+02 Score=29.03 Aligned_cols=36 Identities=33% Similarity=0.505 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhcc
Q 009055 493 KIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDK 528 (545)
Q Consensus 493 kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~kLRDe 528 (545)
+|+.-...|..--.++..|++.++.||-.|+.=|-.
T Consensus 192 ~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~~R~~ 227 (239)
T PF05276_consen 192 KVEELEAKVKQAKSRYSEALRNLEQISEEIHEQRRR 227 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788888888888899999999999999999987743
No 38
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=27.01 E-value=1.5e+02 Score=25.56 Aligned_cols=39 Identities=18% Similarity=0.359 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 009055 446 HASTLDRLYAWERKLYDEVKASEMIRREYDSKCRILRQL 484 (545)
Q Consensus 446 hsSTLdrLyAWEKKLY~EVKa~E~~R~~ydKKc~~Lr~q 484 (545)
..+=+.=+-.|-.|||+==.+--+||-.|+..+.+||++
T Consensus 34 i~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~e 72 (79)
T PF08581_consen 34 INSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRE 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788999999999999999999999999999975
No 39
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=26.93 E-value=5.9e+02 Score=26.04 Aligned_cols=66 Identities=12% Similarity=0.209 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHH---------------hhHHHHHHHHHHHHHHHhhhh--cCCCchhhHHHHHHHHHHhhHHHHHH
Q 009055 450 LDRLYAWERKLYDEVK---------------ASEMIRREYDSKCRILRQLES--KGVSSHKIDKTRAVVKDLHSRIKVAI 512 (545)
Q Consensus 450 LdrLyAWEKKLY~EVK---------------a~E~~R~~ydKKc~~Lr~qd~--kGad~~kiDkTRa~Vk~L~SrI~Vai 512 (545)
|.+...|-|+-=+.+. .-++-|..|+..|+.++.-.. .-.+. ..|...+++++.|+.-+.
T Consensus 90 l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~---~~t~keleK~~~K~~k~~ 166 (242)
T cd07671 90 LEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSS---TGNPKQSEKSQNKAKQCR 166 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHH
Confidence 4677777776333322 336678999999999876321 00111 124455666666666665
Q ss_pred HHHHHH
Q 009055 513 HRIDSI 518 (545)
Q Consensus 513 q~vdsi 518 (545)
+.++..
T Consensus 167 ~~~~~a 172 (242)
T cd07671 167 DAATEA 172 (242)
T ss_pred HHHHHH
Confidence 555443
No 40
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=26.86 E-value=4.5e+02 Score=27.33 Aligned_cols=75 Identities=12% Similarity=0.305 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhc--CCCchhhHHHHHHHHHHhhHHHHHHHHHHHHH----HHh---hhhhcc---chhhH
Q 009055 466 ASEMIRREYDSKCRILRQLESK--GVSSHKIDKTRAVVKDLHSRIKVAIHRIDSIS----KRI---EELRDK---ELQPQ 533 (545)
Q Consensus 466 a~E~~R~~ydKKc~~Lr~qd~k--Gad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS----~~I---~kLRDe---EL~PQ 533 (545)
.-++-+..|++-|+....--.+ .++. .+.-|++.++++..+.....|.++..- ..| |++-+. +.-||
T Consensus 128 ~leksKk~Y~~acke~E~A~~k~~ka~~-d~~~tk~~~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N~~q~k~Y~e~mP~ 206 (252)
T cd07675 128 QMDNSKKKFERECREAEKAQQSYERLDN-DTNATKSDVEKAKQQLNLRTHMADESKNEYAAQLQNFNGEQHKHFYIVIPQ 206 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 4567899999999765543222 1211 134588888999998888888887432 233 334333 56788
Q ss_pred HHHHHhhh
Q 009055 534 LEDLIEGY 541 (545)
Q Consensus 534 L~ELi~GL 541 (545)
+++-+|-|
T Consensus 207 vfd~lQ~l 214 (252)
T cd07675 207 IYKQLQEM 214 (252)
T ss_pred HHHHHHHH
Confidence 88887765
No 41
>PF12116 SpoIIID: Stage III sporulation protein D; InterPro: IPR014208 Members of this entry represent the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if, and only if, the species is capable of endospore formation. In Bacillus subtilis SpoIIID is a DNA binding protein that is involved in gene repression as well as activation [].; PDB: 2L0K_A.
Probab=25.98 E-value=60 Score=28.34 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 009055 446 HASTLDRLYAWERKLYDEVKASEMIRREYDSKCRILR 482 (545)
Q Consensus 446 hsSTLdrLyAWEKKLY~EVKa~E~~R~~ydKKc~~Lr 482 (545)
|----+||-.|-+.||.|||.- ++|.|.-+.||
T Consensus 37 HkDvteRL~~in~~La~eV~~v----L~~NKaeRhiR 69 (82)
T PF12116_consen 37 HKDVTERLPKINPELAREVRKV----LDYNKAERHIR 69 (82)
T ss_dssp HHHHTTHHHHH-HHHHHHHHHH----HHHHHHTHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHH----HHHHHHHHHhh
Confidence 3334489999999999999842 34444444444
No 42
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=25.88 E-value=4.8e+02 Score=26.85 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=55.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhcCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhh
Q 009055 446 HASTLDRLYAWERKLYDEVKASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEEL 525 (545)
Q Consensus 446 hsSTLdrLyAWEKKLY~EVKa~E~~R~~ydKKc~~Lr~qd~kGad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~kL 525 (545)
....|++||.-+|.|. .+|....-+...|..+...+.....-+..+.-++++.-++.-..+.++.....++.|
T Consensus 170 ~~~~l~~l~~l~~~l~-------~l~~~l~~~~~vl~~l~~~~~~~~~~~~~~~~~~dv~~~~~~l~~~~~~~~e~l~~l 242 (318)
T TIGR00383 170 TSTLMDEILSLRTELL-------ALRRSLWPLRDVLNFLLRKTHLPIQTEEVREYLRDIYDHILSLLEMIETYRELLSSL 242 (318)
T ss_pred CHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999886 566666666666666644332111225677889999989999999999888888887
Q ss_pred hccc
Q 009055 526 RDKE 529 (545)
Q Consensus 526 RDeE 529 (545)
.|.-
T Consensus 243 ~d~~ 246 (318)
T TIGR00383 243 MDLY 246 (318)
T ss_pred HHHH
Confidence 7653
No 43
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=25.81 E-value=4.3e+02 Score=27.67 Aligned_cols=69 Identities=16% Similarity=0.460 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHH--------HHHHh------------------hHHHHHHHHHHHHHHHhhhhcCC--------Cc----
Q 009055 450 LDRLYAWERKLY--------DEVKA------------------SEMIRREYDSKCRILRQLESKGV--------SS---- 491 (545)
Q Consensus 450 LdrLyAWEKKLY--------~EVKa------------------~E~~R~~ydKKc~~Lr~qd~kGa--------d~---- 491 (545)
++++-.|.|.-| +|.|. -|+.|..|+..|+.-+.-..+.. .+
T Consensus 92 ~e~ir~wQKe~~hk~~~~~~Ke~k~~e~~f~KaQKpw~k~~kkv~~aKk~Y~~aCk~e~~A~~~~~~~~~d~~~~~~q~~ 171 (258)
T cd07679 92 FEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAYHTACKEEKLATSREANSKADPALNPEQLK 171 (258)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCcCCHHHHH
Confidence 678888998865 46554 56789999999987774432221 11
Q ss_pred ---hhhHHHHHHHHHHhhHHHHHHHHHHHH
Q 009055 492 ---HKIDKTRAVVKDLHSRIKVAIHRIDSI 518 (545)
Q Consensus 492 ---~kiDkTRa~Vk~L~SrI~Vaiq~vdsi 518 (545)
.+++|++..+.+-..++.-+|+.++.+
T Consensus 172 K~~~k~~k~~~~~~k~~~~Y~~~l~~L~~~ 201 (258)
T cd07679 172 KLQDKVEKCKQDVLKTKEKYEKSLKELDQT 201 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 233555555555555665555555544
No 44
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.78 E-value=6e+02 Score=24.53 Aligned_cols=77 Identities=14% Similarity=0.214 Sum_probs=52.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhcCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q 009055 445 SHASTLDRLYAWERKLYDEVKASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEE 524 (545)
Q Consensus 445 shsSTLdrLyAWEKKLY~EVKa~E~~R~~ydKKc~~Lr~qd~kGad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~k 524 (545)
-++--+.|++..=++|.+.-+.-+.++..-+.....-++. ...+.++....|++|.-+|.-+...+++.-+.++.
T Consensus 112 fL~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~-----~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 112 FLSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKL-----LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-----hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888887766555555555444333333222 23455677788888888888888888888888877
Q ss_pred hh
Q 009055 525 LR 526 (545)
Q Consensus 525 LR 526 (545)
|-
T Consensus 187 l~ 188 (192)
T PF05529_consen 187 LQ 188 (192)
T ss_pred HH
Confidence 64
No 45
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=24.77 E-value=3.1e+02 Score=27.43 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 009055 469 MIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIE 523 (545)
Q Consensus 469 ~~R~~ydKKc~~Lr~qd~kGad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~ 523 (545)
.....+.||-.++-++...|. ..||+-....|+.++.+...+-+-.+.||..|.
T Consensus 127 ~a~~~l~kkr~~~~Kl~~~~~-~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k 180 (224)
T cd07623 127 NAQQTLTKKREAKAKLELSGR-TDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIK 180 (224)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456777777777776664 469999999999999999999999999998774
No 46
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=22.52 E-value=1.5e+02 Score=32.50 Aligned_cols=40 Identities=25% Similarity=0.130 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhcC
Q 009055 449 TLDRLYAWERKLYDEVKASEMIRREYDSKCRILRQLESKG 488 (545)
Q Consensus 449 TLdrLyAWEKKLY~EVKa~E~~R~~ydKKc~~Lr~qd~kG 488 (545)
.=+||-+||.+|-+|.+.-..-=-+|.+||..|.++-.++
T Consensus 329 ~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~~ 368 (373)
T COG5019 329 KEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKL 368 (373)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467788888888888776666666777777776665544
No 47
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=22.11 E-value=6.6e+02 Score=25.55 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHH------------------hhHHHHHHHHHHHHHHHhh------hhcCCCchhhHHHHHHHHHHhh
Q 009055 451 DRLYAWERKLYDEVK------------------ASEMIRREYDSKCRILRQL------ESKGVSSHKIDKTRAVVKDLHS 506 (545)
Q Consensus 451 drLyAWEKKLY~EVK------------------a~E~~R~~ydKKc~~Lr~q------d~kGad~~kiDkTRa~Vk~L~S 506 (545)
.+|-.|-+.+++++| +-++.|..|..+|+.+... ..-+.....++|.+.-+++..-
T Consensus 89 ~~l~~f~~~~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke~e~~~~~~~~~k~~~s~~~~~K~~~K~~Ka~~ 168 (233)
T cd07649 89 KPLLNFRENFKKDMKKLDHHIADLRKQLASRYAAVEKARKALLERQKDLEGKTQQLEIKLSNKTEEDIKKARRKSTQAGD 168 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHH
Confidence 557889888888877 3467788899999887752 2223334446666665555444
Q ss_pred HHHHHHH
Q 009055 507 RIKVAIH 513 (545)
Q Consensus 507 rI~Vaiq 513 (545)
.+.-++.
T Consensus 169 e~~~~ve 175 (233)
T cd07649 169 DLMRCVD 175 (233)
T ss_pred HHHHHHH
Confidence 4444443
No 48
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.28 E-value=4.8e+02 Score=30.55 Aligned_cols=85 Identities=18% Similarity=0.284 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHH-----------HHHHHHHHHHHHhhh---------hcCCCchhhHHHHHHHHHHhhHH
Q 009055 449 TLDRLYAWERKLYDEVKASEMI-----------RREYDSKCRILRQLE---------SKGVSSHKIDKTRAVVKDLHSRI 508 (545)
Q Consensus 449 TLdrLyAWEKKLY~EVKa~E~~-----------R~~ydKKc~~Lr~qd---------~kGad~~kiDkTRa~Vk~L~SrI 508 (545)
...|=|+=++|.-+++|++... ...|+.+|+..-.+. .+..-..++.|++..|+++..++
T Consensus 76 ~~~k~~~~~~k~~k~~~~~~v~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~k~~~~~~k~~~~i~~~~~~y 155 (611)
T KOG2398|consen 76 DVAKYYAEQLKTRKKSKEEGVEKLKQDQSKKKAKDTYEVLCAKSNYLHRCQEKESLKEKEKRKKELAKAELKIKEAREEY 155 (611)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 4445566666666666665533 344555554432221 22334678999999999999999
Q ss_pred HHHHHHHHHHHHH-hhhhhccchhhH
Q 009055 509 KVAIHRIDSISKR-IEELRDKELQPQ 533 (545)
Q Consensus 509 ~Vaiq~vdsiS~~-I~kLRDeEL~PQ 533 (545)
+..+..++.+.+. |+++||-.+--|
T Consensus 156 ~~~~~~~~~vr~~w~~~~~~~c~~fQ 181 (611)
T KOG2398|consen 156 RSLVAKLEKVRKDWEQEMTDLCLKFQ 181 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999876 788888654333
No 49
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=20.86 E-value=1.4e+02 Score=25.24 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=26.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhhhhcc
Q 009055 500 VVKDLHSRIKVAIHRIDSISKRIEELRDK 528 (545)
Q Consensus 500 ~Vk~L~SrI~Vaiq~vdsiS~~I~kLRDe 528 (545)
....|++||.-||..|...-.+|.+|+.+
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999885
No 50
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.73 E-value=6.5e+02 Score=28.28 Aligned_cols=79 Identities=16% Similarity=0.276 Sum_probs=59.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhcCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q 009055 445 SHASTLDRLYAWERKLYDEVKASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEE 524 (545)
Q Consensus 445 shsSTLdrLyAWEKKLY~EVKa~E~~R~~ydKKc~~Lr~qd~kGad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~k 524 (545)
.-...+|+|+.=+++-=.-+..-|.++....+-.+++-+.-.+|.+ .+.+.++.++.|..+|.=.-...+.+...+++
T Consensus 23 ~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~--~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~ 100 (429)
T COG0172 23 GDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED--DAEELIAEVKELKEKLKELEAALDELEAELDT 100 (429)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3457789999988888888888999998888888888877777776 66777777777777776666666655555544
Q ss_pred h
Q 009055 525 L 525 (545)
Q Consensus 525 L 525 (545)
+
T Consensus 101 ~ 101 (429)
T COG0172 101 L 101 (429)
T ss_pred H
Confidence 3
No 51
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=20.59 E-value=4.5e+02 Score=26.31 Aligned_cols=69 Identities=25% Similarity=0.364 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHH-hhhhcCCCchhhHHHHHHHHHHhhHHHHHHHHHH-----------HHHHHhhhhhccchhhHHHHH
Q 009055 470 IRREYDSKCRILR-QLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRID-----------SISKRIEELRDKELQPQLEDL 537 (545)
Q Consensus 470 ~R~~ydKKc~~Lr-~qd~kGad~~kiDkTRa~Vk~L~SrI~Vaiq~vd-----------siS~~I~kLRDeEL~PQL~EL 537 (545)
|-..++.+...|+ .|+.+-+.-..+-|.+--|+.|..|..--.+.++ +|-+.| |-..+.|+-||+|-
T Consensus 91 lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 169 (189)
T TIGR02132 91 IEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKETIQKQI-KTQGEQLQAQLLEK 169 (189)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHH-hhhHHHHHHHHHHH
Confidence 3344555555555 4444444444444445555555555444444444 333333 55678999999875
Q ss_pred Hh
Q 009055 538 IE 539 (545)
Q Consensus 538 i~ 539 (545)
-.
T Consensus 170 ~~ 171 (189)
T TIGR02132 170 QE 171 (189)
T ss_pred HH
Confidence 43
No 52
>TIGR03658 IsdH_HarA haptoglobin-binding heme uptake protein HarA. HarA is a heme-binding NEAT-domain (NEAr Transporter, pfam05031) protein which has been shown to bind to the haptoglobin-hemoglobin complex in order to extract heme from it. HarA has also been reported to bind hemoglobin directly. HarA (also known as IsdH) contains three NEAT domains as well as a sortase A C-terminal signal for localization to the cell wall. The heme bound at the third of these NEAT domains has been shown to be transferred to the IsdA protein also localized at the cell wall, presumably through an additional specific protein-protein interaction. Haptoglobin is a hemoglobin carrier protein involved in scavenging hemoglobin in the blood following red blood cell lysis and targetting it to the liver.
Probab=20.44 E-value=1.4e+02 Score=34.40 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=23.0
Q ss_pred HHHHHHHHHH----hhHHHHHHHHHHHHHHHhh
Q 009055 456 WERKLYDEVK----ASEMIRREYDSKCRILRQL 484 (545)
Q Consensus 456 WEKKLY~EVK----a~E~~R~~ydKKc~~Lr~q 484 (545)
-||+.|+-=| --|++|.+|.||+.++|+-
T Consensus 490 LERqvYELnk~qdkLPEKlkAeYkkKLeqtkk~ 522 (895)
T TIGR03658 490 LERQVYELEKLQEKLPEKYKAEYKKKLDQTRVE 522 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 5777777544 4688999999999999873
No 53
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.31 E-value=7e+02 Score=25.68 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=49.4
Q ss_pred HHHHHHHHHHH-------hhHHHHHHHHHHHHHHHhhhhcCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhc
Q 009055 455 AWERKLYDEVK-------ASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRD 527 (545)
Q Consensus 455 AWEKKLY~EVK-------a~E~~R~~ydKKc~~Lr~qd~kGad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~kLRD 527 (545)
-|+.-|...+| -=|.-|+.||-+-.+|++-. . ..+-+..|..|+.++-+...+.......-..| |..
T Consensus 137 pL~~~L~~d~k~i~k~RKkle~~RLd~D~~K~~~~ka~--~--~~k~~~~~~e~E~aEdef~~a~E~a~~~M~~i--l~~ 210 (242)
T cd07600 137 KLRETLNTSFQKAHKARKKVEDKRLQLDTARAELKSAE--P--AEKQEAARVEVETAEDEFVSATEEAVELMKEV--LDN 210 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--c--cccccchHHHHHHHHHHHHHhHHHHHHHHHHH--Hhh
Confidence 35555554444 34566777887777665421 1 13446678888888887777766555555555 444
Q ss_pred cchhhHHHHHHhh
Q 009055 528 KELQPQLEDLIEG 540 (545)
Q Consensus 528 eEL~PQL~ELi~G 540 (545)
.|.--+|.+||.-
T Consensus 211 ~e~i~~L~~fv~A 223 (242)
T cd07600 211 PEPLQLLKELVKA 223 (242)
T ss_pred hHHHHHHHHHHHH
Confidence 6667777777764
No 54
>PF08629 PDE8: PDE8 phosphodiesterase; InterPro: IPR013938 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This region is found at the N terminus of members of PDE8 phosphodiesterase family []. Phosphodiesterase 8 (PDE8) regulates chemotaxis of activated lymphocytes [].
Probab=20.23 E-value=16 Score=28.89 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=9.9
Q ss_pred CCCCcccccchHHHHHhHH
Q 009055 1 MGVSSSKLEEDKALQLCRE 19 (545)
Q Consensus 1 MGc~~Sk~d~~~av~lCre 19 (545)
|||+.|=---+--|..|||
T Consensus 1 mgcapsihVSqSgVvy~re 19 (52)
T PF08629_consen 1 MGCAPSIHVSQSGVVYCRE 19 (52)
T ss_pred CCcCCcEeEcccceEEEec
Confidence 6666654444444555554
Done!