Query 009055
Match_columns 545
No_of_seqs 165 out of 216
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 17:48:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v0o_A FCHO2, FCH domain only 86.4 6.3 0.00022 37.9 11.9 72 465-541 136-207 (276)
2 2efl_A Formin-binding protein 66.7 39 0.0013 32.6 10.9 43 464-506 136-186 (305)
3 2efk_A CDC42-interacting prote 66.3 40 0.0014 32.6 10.9 24 464-487 129-152 (301)
4 3aco_A Pacsin2, protein kinase 64.5 36 0.0012 34.2 10.5 72 465-541 157-243 (350)
5 1uru_A Amphiphysin; endocytosi 59.9 62 0.0021 30.3 10.7 89 448-540 119-214 (244)
6 2fic_A Bridging integrator 1; 54.9 85 0.0029 29.8 10.9 78 462-539 148-226 (251)
7 3rq9_A TSI2, type VI secretion 51.7 16 0.00055 30.1 4.2 34 508-541 8-44 (85)
8 3mxz_A Tubulin-specific chaper 49.0 1.4E+02 0.0047 26.2 10.6 40 482-521 39-85 (116)
9 4aj5_1 SKA3, spindle and kinet 48.8 33 0.0011 29.8 5.9 88 437-527 5-95 (101)
10 3haj_A Human pacsin2 F-BAR; pa 48.7 1E+02 0.0034 32.7 11.1 50 458-507 143-200 (486)
11 3stq_A TSI2, putative uncharac 46.8 19 0.00067 30.4 4.1 34 508-541 33-69 (102)
12 3abh_A Pacsin2, protein kinase 46.7 84 0.0029 30.8 9.6 72 465-541 157-243 (312)
13 4dyl_A Tyrosine-protein kinase 45.9 92 0.0031 32.2 10.1 70 465-541 134-216 (406)
14 2xvc_A ESCRT-III, SSO0910; cel 44.3 15 0.0005 29.0 2.8 33 457-489 12-54 (59)
15 2x3v_A Syndapin I, protein kin 42.5 1.9E+02 0.0065 28.5 11.5 79 458-541 141-234 (337)
16 3oja_A Leucine-rich immune mol 40.6 1.7E+02 0.0059 30.3 11.3 47 492-538 414-462 (487)
17 1h7c_A Tubulin-specific chaper 40.6 1.5E+02 0.0052 25.6 9.0 39 493-531 56-94 (108)
18 3m3w_A Pacsin3, protein kinase 28.5 76 0.0026 31.7 5.9 73 464-541 147-234 (320)
19 1svf_A Protein (fusion glycopr 28.4 2.2E+02 0.0075 22.6 7.3 50 475-537 13-62 (64)
20 3kpe_A Fusion glycoprotein F0; 27.9 1.6E+02 0.0056 22.4 6.2 39 493-535 12-50 (51)
21 1deq_A Fibrinogen (alpha chain 26.7 1.1E+02 0.0036 32.3 6.6 39 493-531 142-181 (390)
22 3a98_B Engulfment and cell mot 26.6 31 0.0011 33.1 2.5 16 165-180 185-200 (203)
23 3qwe_A GMIP, GEM-interacting p 26.6 3.6E+02 0.012 27.0 10.3 82 456-538 124-222 (279)
24 2yy0_A C-MYC-binding protein; 25.6 1.2E+02 0.0041 23.0 5.2 41 484-524 11-51 (53)
25 1qsd_A Protein (beta-tubulin b 22.3 3.7E+02 0.013 23.0 9.3 38 493-533 54-91 (106)
26 3lay_A Zinc resistance-associa 20.9 77 0.0026 29.7 3.9 43 470-512 90-133 (175)
27 1wmi_B RELB, hypothetical prot 20.5 24 0.00082 28.0 0.3 37 494-531 3-42 (67)
28 1jei_A Emerin; membrane protei 20.2 32 0.0011 26.6 0.9 19 469-487 28-46 (53)
No 1
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=86.35 E-value=6.3 Score=37.88 Aligned_cols=72 Identities=14% Similarity=0.291 Sum_probs=55.9
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhcCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHhhh
Q 009055 465 KASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIEGY 541 (545)
Q Consensus 465 Ka~E~~R~~ydKKc~~Lr~qd~kGad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~kLRDeEL~PQL~ELi~GL 541 (545)
++-++.|..|+++|+.+.++...|.....++|.++-+++....+..+++..+.+- .+. ++.+|++++.+|.|
T Consensus 136 ~~l~Kak~~Y~~~c~e~e~~~~~~~s~k~~eK~~~k~~ka~~~Y~~~v~~~n~~~---~~~--~~~~~~~~~~lQ~l 207 (276)
T 2v0o_A 136 QALQKSKENYNAKCVEQERLKKEGATQREIEKAAVKSKKATDTYKLYVEKYALAK---ADF--EQKMTETAQKFQDI 207 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHH
Confidence 4567789999999999987776677788889999888888888888887776543 334 57788888877655
No 2
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=66.71 E-value=39 Score=32.63 Aligned_cols=43 Identities=19% Similarity=0.344 Sum_probs=27.5
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhhc--------CCCchhhHHHHHHHHHHhh
Q 009055 464 VKASEMIRREYDSKCRILRQLESK--------GVSSHKIDKTRAVVKDLHS 506 (545)
Q Consensus 464 VKa~E~~R~~ydKKc~~Lr~qd~k--------Gad~~kiDkTRa~Vk~L~S 506 (545)
++.-++.|..|+.+|+.+.....+ +.....++|++.-...+..
T Consensus 136 ~~~l~KaK~~Y~~~~~e~e~a~~~~~~~~~~~~~s~~~~eK~~~k~~~~~~ 186 (305)
T 2efl_A 136 WKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQ 186 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHHHHHH
Confidence 445678899999999888764432 2333467777766544333
No 3
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=66.30 E-value=40 Score=32.62 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=17.7
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhhc
Q 009055 464 VKASEMIRREYDSKCRILRQLESK 487 (545)
Q Consensus 464 VKa~E~~R~~ydKKc~~Lr~qd~k 487 (545)
++.-++.|..|++.|+.+.....+
T Consensus 129 ~~~l~KaKk~Y~~~~~e~e~a~~~ 152 (301)
T 2efk_A 129 FKQLENSKRKFERDCREAEKAAQT 152 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345668899999999888765443
No 4
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=64.53 E-value=36 Score=34.22 Aligned_cols=72 Identities=11% Similarity=0.232 Sum_probs=39.7
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhc-----C---CCchhhHHHHHHHHHH-------hhHHHHHHHHHHHHHHHhhhhhccc
Q 009055 465 KASEMIRREYDSKCRILRQLESK-----G---VSSHKIDKTRAVVKDL-------HSRIKVAIHRIDSISKRIEELRDKE 529 (545)
Q Consensus 465 Ka~E~~R~~ydKKc~~Lr~qd~k-----G---ad~~kiDkTRa~Vk~L-------~SrI~Vaiq~vdsiS~~I~kLRDeE 529 (545)
+.-++.|..|+++|+.+.....+ + .....++|.+.-+.++ ...+..+++..+.+-.. . ++
T Consensus 157 ~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~---~--~~ 231 (350)
T 3aco_A 157 KEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQ---Y--ME 231 (350)
T ss_dssp HHHHHTTTTHHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH---H--HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HH
Confidence 35577888999999987665431 1 1124455554444443 44444555555443221 1 34
Q ss_pred hhhHHHHHHhhh
Q 009055 530 LQPQLEDLIEGY 541 (545)
Q Consensus 530 L~PQL~ELi~GL 541 (545)
.+|++++.+|-|
T Consensus 232 ~~~~~~~~~Q~l 243 (350)
T 3aco_A 232 NMEQVFEQCQQF 243 (350)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 567777666544
No 5
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=59.87 E-value=62 Score=30.31 Aligned_cols=89 Identities=13% Similarity=0.180 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHhhhhcC---CCchhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 009055 448 STLDRLYAWERKLYDEV----KASEMIRREYDSKCRILRQLESKG---VSSHKIDKTRAVVKDLHSRIKVAIHRIDSISK 520 (545)
Q Consensus 448 STLdrLyAWEKKLY~EV----Ka~E~~R~~ydKKc~~Lr~qd~kG---ad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~ 520 (545)
..|.+|. +.|.+| |-.+.-++.||+.-..|.++-.++ .+..+|.++...+....-...-.-.-+..---
T Consensus 119 ~Pl~~~~----~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k~kd~~kl~~ae~el~~ak~~ye~ln~~L~~eLp 194 (244)
T 1uru_A 119 IPLNTYT----GQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELP 194 (244)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBTTBCCTTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4455554 455544 567888999999988888887664 45556655555544433333322222333334
Q ss_pred HhhhhhccchhhHHHHHHhh
Q 009055 521 RIEELRDKELQPQLEDLIEG 540 (545)
Q Consensus 521 ~I~kLRDeEL~PQL~ELi~G 540 (545)
++..+|.+-+.|+|..||..
T Consensus 195 ~l~~~~~~~~~~~l~~fv~~ 214 (244)
T 1uru_A 195 ALYDSRILFLVTNLQTLFAT 214 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777766654
No 6
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=54.93 E-value=85 Score=29.78 Aligned_cols=78 Identities=10% Similarity=0.042 Sum_probs=40.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhhhcCC-CchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHh
Q 009055 462 DEVKASEMIRREYDSKCRILRQLESKGV-SSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIE 539 (545)
Q Consensus 462 ~EVKa~E~~R~~ydKKc~~Lr~qd~kGa-d~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~kLRDeEL~PQL~ELi~ 539 (545)
+-+|-.+.-|+.||+.-..|+++-.++. +..+|-++...++.......-.-.-+..---.+..+|-+-+.|+|..++.
T Consensus 148 ~~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~ 226 (251)
T 2fic_A 148 SRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAG 226 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678899999987777777665553 55566665555544443333222222222333445555555666665553
No 7
>3rq9_A TSI2, type VI secretion immunity protein; antitoxin, TSE2-BI protein; 1.00A {Pseudomonas aeruginosa} PDB: 3vpv_A
Probab=51.71 E-value=16 Score=30.13 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhhH---HHHHHhhh
Q 009055 508 IKVAIHRIDSISKRIEELRDKELQPQ---LEDLIEGY 541 (545)
Q Consensus 508 I~Vaiq~vdsiS~~I~kLRDeEL~PQ---L~ELi~GL 541 (545)
++||||+|++-.+++..+-|++--|- |..|+-|+
T Consensus 8 LmvAIQcVaAei~~Lda~l~e~~ppna~elEqLLV~f 44 (85)
T 3rq9_A 8 LMVAIQCVAARTRELDAQLQNDDPQNAAELEQLLVGY 44 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHHhccccccCCCcchhHHHHhhh
Confidence 68999999999999999999999888 66665554
No 8
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=48.98 E-value=1.4e+02 Score=26.24 Aligned_cols=40 Identities=20% Similarity=0.430 Sum_probs=28.3
Q ss_pred HhhhhcCCCchh-------hHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 009055 482 RQLESKGVSSHK-------IDKTRAVVKDLHSRIKVAIHRIDSISKR 521 (545)
Q Consensus 482 r~qd~kGad~~k-------iDkTRa~Vk~L~SrI~Vaiq~vdsiS~~ 521 (545)
.++...|.|... ++-|+.+|-+++.||.-++..+..+-..
T Consensus 39 ekmk~e~~dey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l~~ 85 (116)
T 3mxz_A 39 ADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALADLKSTLAE 85 (116)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333345666655 4568889999999999888877776543
No 9
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=48.79 E-value=33 Score=29.75 Aligned_cols=88 Identities=26% Similarity=0.179 Sum_probs=65.2
Q ss_pred cccccccCchhhHHHHHHHHHHHHHH-HHH--hhHHHHHHHHHHHHHHHhhhhcCCCchhhHHHHHHHHHHhhHHHHHHH
Q 009055 437 DSIHMISSSHASTLDRLYAWERKLYD-EVK--ASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIH 513 (545)
Q Consensus 437 ~~~~~~sgshsSTLdrLyAWEKKLY~-EVK--a~E~~R~~ydKKc~~Lr~qd~kGad~~kiDkTRa~Vk~L~SrI~Vaiq 513 (545)
.+||..-.++++|||+=-||=+.=.+ |=- .+-.+|+.||=.|.- +.| ||.-...+||.|+.-..+..=|..+-=
T Consensus 5 ~~Ff~KLR~La~tLe~Eta~L~~al~~edsd~E~~~~rilhdl~seV-~~L--K~dv~~~L~k~~~e~qe~~~FIKa~kv 81 (101)
T 4aj5_1 5 RSFCGKLRSLASTLDCETARLQRALDGEESDFEDYPMRILYDLHSEV-QTL--KDDINILLDKARLENQEGIDFIKATKV 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45677778999999998887443333 110 234789999887742 222 455567899999999999999999988
Q ss_pred HHHHHHHHhhhhhc
Q 009055 514 RIDSISKRIEELRD 527 (545)
Q Consensus 514 ~vdsiS~~I~kLRD 527 (545)
-+..++.-|.+||.
T Consensus 82 L~~rns~DI~~ire 95 (101)
T 4aj5_1 82 LMEKNSMDIMKIRE 95 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHH
Confidence 89999999999974
No 10
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=48.72 E-value=1e+02 Score=32.68 Aligned_cols=50 Identities=10% Similarity=0.220 Sum_probs=31.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhhh--------cCCCchhhHHHHHHHHHHhhH
Q 009055 458 RKLYDEVKASEMIRREYDSKCRILRQLES--------KGVSSHKIDKTRAVVKDLHSR 507 (545)
Q Consensus 458 KKLY~EVKa~E~~R~~ydKKc~~Lr~qd~--------kGad~~kiDkTRa~Vk~L~Sr 507 (545)
|+|=+=.+.-++.|..|+++|+..+.... .+.....++|.+.-+++...+
T Consensus 143 k~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~ 200 (486)
T 3haj_A 143 KPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQD 200 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHH
Confidence 34444455667889999999987766532 233345666666666555433
No 11
>3stq_A TSI2, putative uncharacterized protein; coiled-coil, toxin-antitoxin system, TSI2-TSE2, T6SS, toxin toxin; 2.28A {Pseudomonas aeruginosa}
Probab=46.83 E-value=19 Score=30.45 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhhH---HHHHHhhh
Q 009055 508 IKVAIHRIDSISKRIEELRDKELQPQ---LEDLIEGY 541 (545)
Q Consensus 508 I~Vaiq~vdsiS~~I~kLRDeEL~PQ---L~ELi~GL 541 (545)
++||||+|++-.+++..+-|++--|- |..|+-|+
T Consensus 33 LmvAIQcVaAei~~Lda~l~e~~ppna~elEqLLV~f 69 (102)
T 3stq_A 33 LMVAIQCVAARTRELDAQLQNDDPQNAAELEQLLVGY 69 (102)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHhccccccCCCcchhHHHhhhh
Confidence 67999999999999999999999888 66665554
No 12
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=46.70 E-value=84 Score=30.75 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=46.1
Q ss_pred HhhHHHHHHHHHHHHHHHhhhh-----cC---CC-------chhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccc
Q 009055 465 KASEMIRREYDSKCRILRQLES-----KG---VS-------SHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKE 529 (545)
Q Consensus 465 Ka~E~~R~~ydKKc~~Lr~qd~-----kG---ad-------~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~kLRDeE 529 (545)
+.-++.|..|+++|+.+..... ++ .. ..+++|++..+.+....+..+++..+.+-..- ++
T Consensus 157 ~~l~KaK~~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~-----~~ 231 (312)
T 3abh_A 157 KEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQY-----ME 231 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCCSHHHHGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----HH
Confidence 4457889999999998766543 11 11 12345566666667777778888777763332 45
Q ss_pred hhhHHHHHHhhh
Q 009055 530 LQPQLEDLIEGY 541 (545)
Q Consensus 530 L~PQL~ELi~GL 541 (545)
.+|++++.+|-|
T Consensus 232 ~~~~~~~~~Q~l 243 (312)
T 3abh_A 232 NMEQVFEQCQQF 243 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777766544
No 13
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=45.92 E-value=92 Score=32.25 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=38.1
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhcCCCc---hhhHHHHHHHHHHhh-------HHHHHHHHHHHHHHHhhhhhcc---chh
Q 009055 465 KASEMIRREYDSKCRILRQLESKGVSS---HKIDKTRAVVKDLHS-------RIKVAIHRIDSISKRIEELRDK---ELQ 531 (545)
Q Consensus 465 Ka~E~~R~~ydKKc~~Lr~qd~kGad~---~kiDkTRa~Vk~L~S-------rI~Vaiq~vdsiS~~I~kLRDe---EL~ 531 (545)
+.-++.+..|++.|+.......+=.+. ..++|++.-..+... .+..++++. ++.++. +.+
T Consensus 134 ~~lekaKk~Y~~~cke~e~A~~k~~~~~k~ke~eK~~~k~~k~~~~~~~a~neY~~~l~~~-------N~~~~~yy~~~l 206 (406)
T 4dyl_A 134 QDIEKLKSQYRALARDSAQAKRKYQEASKDKDRDKAKDKYVRSLWKLFAHHNRYVLGVRAA-------QLHHQHHHQLLL 206 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhh
Confidence 566788999999999887655432221 334555554444433 333333333 333333 677
Q ss_pred hHHHHHHhhh
Q 009055 532 PQLEDLIEGY 541 (545)
Q Consensus 532 PQL~ELi~GL 541 (545)
|+|++-+|-|
T Consensus 207 p~~~d~lQ~l 216 (406)
T 4dyl_A 207 PGLLRSLQDL 216 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877765543
No 14
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=44.33 E-value=15 Score=29.00 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=26.6
Q ss_pred HHHHHHHHHhh----------HHHHHHHHHHHHHHHhhhhcCC
Q 009055 457 ERKLYDEVKAS----------EMIRREYDSKCRILRQLESKGV 489 (545)
Q Consensus 457 EKKLY~EVKa~----------E~~R~~ydKKc~~Lr~qd~kGa 489 (545)
|.+||+++++. ++.++.=|.=...||+|+.||.
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGL 54 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGL 54 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCC
Confidence 88999999953 4555666777899999999995
No 15
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=42.51 E-value=1.9e+02 Score=28.52 Aligned_cols=79 Identities=15% Similarity=0.194 Sum_probs=41.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhh-----hcC---CCchhhHHHHHHHHHH-------hhHHHHHHHHHHHHHHHh
Q 009055 458 RKLYDEVKASEMIRREYDSKCRILRQLE-----SKG---VSSHKIDKTRAVVKDL-------HSRIKVAIHRIDSISKRI 522 (545)
Q Consensus 458 KKLY~EVKa~E~~R~~ydKKc~~Lr~qd-----~kG---ad~~kiDkTRa~Vk~L-------~SrI~Vaiq~vdsiS~~I 522 (545)
|.|=+=++.-++.|..|+++|+.+.... .++ .....++|.+.-+.++ ...+..+++.++.+-
T Consensus 141 k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~--- 217 (337)
T 2x3v_A 141 KPWAKKMKELEAAKKAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTT--- 217 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 3333334566788999999998865432 111 2223445555444444 344444444444431
Q ss_pred hhhhccchhhHHHHHHhhh
Q 009055 523 EELRDKELQPQLEDLIEGY 541 (545)
Q Consensus 523 ~kLRDeEL~PQL~ELi~GL 541 (545)
-+=++.+|++++.+|-|
T Consensus 218 --~~~~~~~~~~~~~~Q~l 234 (337)
T 2x3v_A 218 --PQYMEGMEQVFEQCQQF 234 (337)
T ss_dssp --HHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHH
Confidence 12245567777766544
No 16
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=40.63 E-value=1.7e+02 Score=30.33 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhcc--chhhHHHHHH
Q 009055 492 HKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDK--ELQPQLEDLI 538 (545)
Q Consensus 492 ~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~kLRDe--EL~PQL~ELi 538 (545)
.-+++.+...+.++..+....|-++.++.+|++||.+ .|.|-|-+|.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEAD 462 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhh
Confidence 3455566677788888888999999999999999984 5666665554
No 17
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=40.62 E-value=1.5e+02 Score=25.55 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchh
Q 009055 493 KIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQ 531 (545)
Q Consensus 493 kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~kLRDeEL~ 531 (545)
.++.|+..|-++..||.-++..+..+-..=..+.+.|-|
T Consensus 56 vl~Et~~mipd~~~Rl~~a~~~L~~~l~~e~~~~~~ee~ 94 (108)
T 1h7c_A 56 ILQESRMMIPDCQRRLEAAYLDLQRILENEKDLEEAEEY 94 (108)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHCGGGTTSHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccCCCcHHH
Confidence 567788889999999999998888776533344444433
No 18
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=28.51 E-value=76 Score=31.67 Aligned_cols=73 Identities=8% Similarity=0.161 Sum_probs=40.9
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhhc--------C---CCc----hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhcc
Q 009055 464 VKASEMIRREYDSKCRILRQLESK--------G---VSS----HKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDK 528 (545)
Q Consensus 464 VKa~E~~R~~ydKKc~~Lr~qd~k--------G---ad~----~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~kLRDe 528 (545)
+|.-++.|..|++.|+..+..... + .+. .++.|+...+.+-.-.+..+++..+.+-.. =+
T Consensus 147 ~~~l~kaKk~Y~~~c~e~~~a~~~~~~~~~d~~~s~ke~~K~~~k~~k~~~~~~~a~~~Y~~~l~~~n~~~~~-----y~ 221 (320)
T 3m3w_A 147 LKEVEASKKSYHTARKDEKTAQTRESHAKADSSMSQEQLRKLQERVGRCTKEAEKMKTQYEQTLAELNRYTPR-----YM 221 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCC---CCSSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----HH
Confidence 345678899999999986655421 1 111 234455555555666666666665554321 13
Q ss_pred chhhHHHHHHhhh
Q 009055 529 ELQPQLEDLIEGY 541 (545)
Q Consensus 529 EL~PQL~ELi~GL 541 (545)
+-+|++++-+|-|
T Consensus 222 ~~~~~~~~~~Q~l 234 (320)
T 3m3w_A 222 EDMEQAFESCQAA 234 (320)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4456666655543
No 19
>1svf_A Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=28.39 E-value=2.2e+02 Score=22.62 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=37.5
Q ss_pred HHHHHHHHhhhhcCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchhhHHHHH
Q 009055 475 DSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDL 537 (545)
Q Consensus 475 dKKc~~Lr~qd~kGad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~kLRDeEL~PQL~EL 537 (545)
.++..+||. .|.+|-.+|.+|..-+....-+|..+-.-|+ ++|.|+|.+|
T Consensus 13 a~~I~~LK~---------Si~~TNeAV~el~~g~~~lavAv~~lQd~IN----~~i~Pain~l 62 (64)
T 1svf_A 13 AAAILNLKN---------AIQKTNAAVADVVQATQSLGTAVQAVQDHIN----SVVSPAITAA 62 (64)
T ss_dssp HHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTHHHHHHHT
T ss_pred HHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhc
Confidence 345556665 7889999999998877777777766655554 7899999876
No 20
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=27.89 E-value=1.6e+02 Score=22.44 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchhhHHH
Q 009055 493 KIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLE 535 (545)
Q Consensus 493 kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~kLRDeEL~PQL~ 535 (545)
.|-+|-.+|.+|-.-..+.--+|+.|-..|+ +++.|+|.
T Consensus 12 ai~~TNeAV~~L~~g~~~la~Av~~iQ~~IN----~~i~pain 50 (51)
T 3kpe_A 12 ALLSTNKAVVSLSNGVSVLTSKVLDLKNYID----KQLLPIVN 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTGGGC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhc
Confidence 7899999999999888888888887777776 56777763
No 21
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.72 E-value=1.1e+02 Score=32.35 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhh-ccchh
Q 009055 493 KIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELR-DKELQ 531 (545)
Q Consensus 493 kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~kLR-DeEL~ 531 (545)
.|+.-|..|++|+..|.+++..-...+.+=-.++ |-|.|
T Consensus 142 ~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~y 181 (390)
T 1deq_A 142 NVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDY 181 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHH
Confidence 7899999999999999988866555544444444 44333
No 22
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=26.59 E-value=31 Score=33.05 Aligned_cols=16 Identities=25% Similarity=0.627 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCCCCCC
Q 009055 165 EDSPLPPETQPWDYFG 180 (545)
Q Consensus 165 ~~pp~PP~~s~WDFF~ 180 (545)
.|||.||..+.||||.
T Consensus 185 ~~ppip~~P~~~dF~~ 200 (203)
T 3a98_B 185 APPPIPKEPSNYDFVY 200 (203)
T ss_dssp SCCCCCCCCSCCCCSS
T ss_pred CCCCCCcCCCCcceee
Confidence 4556788889999986
No 23
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=26.55 E-value=3.6e+02 Score=27.02 Aligned_cols=82 Identities=12% Similarity=0.235 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhcCC----------CchhhHHHHHHHHHHhhHHHHHH-------HHHHHH
Q 009055 456 WERKLYDEVKASEMIRREYDSKCRILRQLESKGV----------SSHKIDKTRAVVKDLHSRIKVAI-------HRIDSI 518 (545)
Q Consensus 456 WEKKLY~EVKa~E~~R~~ydKKc~~Lr~qd~kGa----------d~~kiDkTRa~Vk~L~SrI~Vai-------q~vdsi 518 (545)
-|||+=+=+-+-++-|..|+..|..+.+.-.... ..-.+||+|-.=++|..|+.-|. +...+.
T Consensus 124 ~eKk~~dae~~l~KAK~~Y~~r~ee~ekak~~~~~~e~~q~~~~~~K~lek~r~~EEea~~K~eeAd~~Y~~~V~~a~~~ 203 (279)
T 3qwe_A 124 EQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQACVREANAR 203 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777899999999999999887654322 13447887777677777666554 444444
Q ss_pred HHHhhhhhccchhhHHHHHH
Q 009055 519 SKRIEELRDKELQPQLEDLI 538 (545)
Q Consensus 519 S~~I~kLRDeEL~PQL~ELi 538 (545)
-..+++-| .+..-||-+||
T Consensus 204 r~eL~~tk-~~~v~~Lr~LI 222 (279)
T 3qwe_A 204 QQDLEIAK-QRIVSHVRKLV 222 (279)
T ss_dssp HHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHhh-HHHHHHHHHHH
Confidence 45555444 44444455554
No 24
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.58 E-value=1.2e+02 Score=23.04 Aligned_cols=41 Identities=7% Similarity=0.235 Sum_probs=32.3
Q ss_pred hhhcCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q 009055 484 LESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEE 524 (545)
Q Consensus 484 qd~kGad~~kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~k 524 (545)
|-.-|.+..-+|+-|..+.+|..|+.-....++...+++++
T Consensus 11 LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 11 LGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33347788999999999999999999999888888887764
No 25
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=22.30 E-value=3.7e+02 Score=23.04 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchhhH
Q 009055 493 KIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQ 533 (545)
Q Consensus 493 kiDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~kLRDeEL~PQ 533 (545)
.++.|+..|-+++.||.-++..+..+- ..+.+.|-|=.
T Consensus 54 vl~Et~~mipd~~~Rl~~a~~~L~~~l---~~~~~~ee~~~ 91 (106)
T 1qsd_A 54 VLDDTKRLLPTLYEKIREFKEDLEQFL---KTYQGTEDVSD 91 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HTCCSSSCCHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH---HhccCcHHHHH
Confidence 567788899999999999888887766 45555544433
No 26
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.88 E-value=77 Score=29.71 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhhh-cCCCchhhHHHHHHHHHHhhHHHHHH
Q 009055 470 IRREYDSKCRILRQLES-KGVSSHKIDKTRAVVKDLHSRIKVAI 512 (545)
Q Consensus 470 ~R~~ydKKc~~Lr~qd~-kGad~~kiDkTRa~Vk~L~SrI~Vai 512 (545)
+|....-|-.+|+.+-. ...|..+|++.-..|.+|+.++.+..
T Consensus 90 Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 90 LRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555567776664 34678888888888888888877643
No 27
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=20.46 E-value=24 Score=27.99 Aligned_cols=37 Identities=30% Similarity=0.589 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh---hhccchh
Q 009055 494 IDKTRAVVKDLHSRIKVAIHRIDSISKRIEE---LRDKELQ 531 (545)
Q Consensus 494 iDkTRa~Vk~L~SrI~Vaiq~vdsiS~~I~k---LRDeEL~ 531 (545)
++|+..+++.|. ||.|-||.+++..--|.+ +-++||-
T Consensus 3 MEkv~~vl~ELe-RlkveiQRLE~ml~p~~~~e~v~eeEl~ 42 (67)
T 1wmi_B 3 MEKVGDVLKELE-RLKVEIQRLEAMLMPEERDEDITEEEIA 42 (67)
T ss_dssp ----CHHHHHHH-HHHHHHHHHHHHTSCBCCCTTCCHHHHH
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHhccccCCCCCCHHHHH
Confidence 567777777775 999999999998876655 6666664
No 28
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=20.24 E-value=32 Score=26.56 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 009055 469 MIRREYDSKCRILRQLESK 487 (545)
Q Consensus 469 ~~R~~ydKKc~~Lr~qd~k 487 (545)
..|..|+||..+|+.+..+
T Consensus 28 sTRklYeKKL~~l~~~~~~ 46 (53)
T 1jei_A 28 STRRLYEKKIFEYETQRRR 46 (53)
T ss_dssp GGGHHHHHHHHHTTTTCSC
T ss_pred ccHHHHHHHHHHHHHccCC
Confidence 4677888888887776543
Done!