Your job contains 1 sequence.
>009056
MSANNNNPAKSLGQTSSPFANAGMGSPSMPMNPGFPQSQAQAQMGAGFPSQFQLSQAQAL
AQAHQSKMHAQVAQAQAAHAQLQAHLQAQGLSINQFQNAGIGNLGSSSPSNLTPGNASLK
RMPQKPPVRPPVVPMSNMVSPLKAMELTSAARRKKQKLPEKQLQERVAAILPESALYTQL
LEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKTIPKKPNAEPPTWTL
KIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLYPDNHIIVWENSRSPA
PHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKA
RKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQPIHLEHKIKLSGNSPV
GTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIRKIHEHRRRRAFFLGFS
QSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLNRKPAAGSD
APGST
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009056
(545 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2174638 - symbol:CHC1 "AT5G14170" species:3702... 1857 1.2e-191 1
TAIR|locus:2078713 - symbol:AT3G01890 "AT3G01890" species... 1476 1.2e-153 2
UNIPROTKB|F1MTG9 - symbol:SMARCD1 "SWI/SNF-related matrix... 694 2.1e-68 1
UNIPROTKB|Q96GM5 - symbol:SMARCD1 "SWI/SNF-related matrix... 689 7.2e-68 1
MGI|MGI:1933623 - symbol:Smarcd1 "SWI/SNF related, matrix... 689 7.2e-68 1
RGD|1305406 - symbol:Smarcd1 "SWI/SNF related, matrix ass... 689 7.2e-68 1
UNIPROTKB|H9KZE0 - symbol:SMARCD1 "Uncharacterized protei... 688 9.2e-68 1
UNIPROTKB|Q2TBN1 - symbol:SMARCD1 "SWI/SNF-related matrix... 685 1.9e-67 1
ZFIN|ZDB-GENE-080509-2 - symbol:smarcd3b "SWI/SNF related... 677 1.3e-66 1
FB|FBgn0025463 - symbol:Bap60 "Brahma associated protein ... 673 3.6e-66 1
UNIPROTKB|F1NJN5 - symbol:SMARCD3 "Uncharacterized protei... 660 8.5e-65 1
WB|WBGene00044072 - symbol:ham-3 species:6239 "Caenorhabd... 659 1.1e-64 1
UNIPROTKB|Q17QK5 - symbol:SMARCD3 "SWI/SNF related, matri... 647 2.0e-63 1
UNIPROTKB|F1SSN0 - symbol:SMARCD3 "Uncharacterized protei... 647 2.0e-63 1
UNIPROTKB|Q6STE5 - symbol:SMARCD3 "SWI/SNF-related matrix... 646 2.6e-63 1
MGI|MGI:1914243 - symbol:Smarcd3 "SWI/SNF related, matrix... 646 2.6e-63 1
RGD|1311869 - symbol:Smarcd3 "SWI/SNF related, matrix ass... 645 3.3e-63 1
UNIPROTKB|E1C555 - symbol:SMARCD2 "Uncharacterized protei... 619 8.8e-63 2
MGI|MGI:1933621 - symbol:Smarcd2 "SWI/SNF related, matrix... 592 7.8e-60 2
WB|WBGene00015971 - symbol:swsn-2.2 species:6239 "Caenorh... 608 2.7e-59 1
DICTYBASE|DDB_G0273725 - symbol:snf12-2 "SWI/SNF protein ... 571 6.1e-58 2
DICTYBASE|DDB_G0273203 - symbol:snf12-1 "SWI/SNF protein ... 571 6.1e-58 2
UNIPROTKB|E1BJD1 - symbol:SMARCD2 "SWI/SNF-related matrix... 590 2.2e-57 1
UNIPROTKB|F1RSJ9 - symbol:SMARCD2 "Uncharacterized protei... 590 2.2e-57 1
UNIPROTKB|Q92925 - symbol:SMARCD2 "SWI/SNF-related matrix... 589 2.8e-57 1
RGD|69289 - symbol:Smarcd2 "SWI/SNF related, matrix assoc... 589 2.8e-57 1
UNIPROTKB|F1SHA1 - symbol:SMARCD1 "Uncharacterized protei... 499 9.8e-48 1
POMBASE|SPAC23G3.10c - symbol:ssr3 "SWI/SNF and RSC compl... 497 1.6e-47 1
ASPGD|ASPL0000017588 - symbol:AN10524 species:162425 "Eme... 354 8.5e-43 2
CGD|CAL0006320 - symbol:orf19.2265 species:5476 "Candida ... 149 1.2e-16 2
UNIPROTKB|Q59Z35 - symbol:SNF12 "Putative uncharacterized... 149 1.2e-16 2
SGD|S000005306 - symbol:SNF12 "73 kDa subunit of the SWI/... 162 1.4e-13 2
SGD|S000000648 - symbol:RSC6 "Component of the RSC chroma... 108 1.7e-09 3
SGD|S000004846 - symbol:TRI1 "Non-essential sumoylated pr... 142 1.8e-07 1
POMBASE|SPCC285.17 - symbol:spp27 "RNA polymerase I upstr... 141 2.9e-07 1
TAIR|locus:2096404 - symbol:AT3G03590 "AT3G03590" species... 116 3.5e-06 1
UNIPROTKB|G4MMD0 - symbol:MGG_01988 "Uncharacterized prot... 132 7.0e-06 1
TAIR|locus:505006294 - symbol:AT2G35605 "AT2G35605" speci... 107 3.3e-05 1
TAIR|locus:2116189 - symbol:AT4G34290 "AT4G34290" species... 107 3.3e-05 1
SGD|S000005821 - symbol:UAF30 "Subunit of UAF (upstream a... 121 6.4e-05 1
UNIPROTKB|F8VW95 - symbol:SMARCD1 "SWI/SNF-related matrix... 103 8.9e-05 1
TAIR|locus:2060469 - symbol:AT2G14880 "AT2G14880" species... 102 0.00023 1
ASPGD|ASPL0000053508 - symbol:AN0360 species:162425 "Emer... 115 0.00056 1
>TAIR|locus:2174638 [details] [associations]
symbol:CHC1 "AT5G14170" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0048364 "root development"
evidence=IMP] [GO:0006281 "DNA repair" evidence=IMP] [GO:0010224
"response to UV-B" evidence=IEP] [GO:0000956 "nuclear-transcribed
mRNA catabolic process" evidence=RCA] [GO:0008284 "positive
regulation of cell proliferation" evidence=RCA] InterPro:IPR003121
Pfam:PF02201 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
EMBL:AB007650 GO:GO:0048364 GO:GO:0010224 SUPFAM:SSF47592
eggNOG:COG5531 HOGENOM:HOG000240746 KO:K11650 OMA:NTFYPSK
EMBL:BT008892 EMBL:AY065106 IPI:IPI00539458 RefSeq:NP_196921.1
UniGene:At.6512 PDB:1V31 PDBsum:1V31 ProteinModelPortal:Q9FMT4
SMR:Q9FMT4 IntAct:Q9FMT4 STRING:Q9FMT4 PaxDb:Q9FMT4 PRIDE:Q9FMT4
EnsemblPlants:AT5G14170.1 GeneID:831267 KEGG:ath:AT5G14170
TAIR:At5g14170 InParanoid:Q9FMT4 PhylomeDB:Q9FMT4
ProtClustDB:CLSN2687209 EvolutionaryTrace:Q9FMT4
Genevestigator:Q9FMT4 GermOnline:AT5G14170 Uniprot:Q9FMT4
Length = 534
Score = 1857 (658.8 bits), Expect = 1.2e-191, P = 1.2e-191
Identities = 371/546 (67%), Positives = 413/546 (75%)
Query: 1 MSANNNNPAKSLGQTSSPFANAGMGSPSMPMNPGFPQSQAQAQMGAGFPXXXXXXXXXXX 60
MS NNNNP K G PF N GM S S+P N GF QS A A F
Sbjct: 1 MSGNNNNPQKPQGSAPLPFGNPGMASASVPGNQGFAQSHMAANFQAQFQFSQAQALAHAQ 60
Query: 61 XXXXXXKMXXXXXXXXXXXXXXXXXXXXXGLSINQFQNA-GIGNLGSSSPSNLTPGNASL 119
K+ G+++NQ Q + GIG LG SSPS TPG+ ++
Sbjct: 61 AQS---KVQAQLQAQLQAQ----------GMTMNQAQGSPGIGGLGPSSPSLTTPGSLNM 107
Query: 120 XXXXXXXXXXXXXXXXXXXXXX-LKAMELTSAAXXXXXXXXXXXXXXXVAAILPESALYT 178
++ MELT AA VAAILPESALYT
Sbjct: 108 KRFQQKPPMRPPGAPASNNTISPMRTMELTPAARKKKQKLPEKSLQERVAAILPESALYT 167
Query: 179 QLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKTIPKKPNAEPPTW 238
QLLEFE+RVDAALTRKKVDIQEALKNPPC+QKTLRIYVFN+FANQ TIP PNA+PPTW
Sbjct: 168 QLLEFESRVDAALTRKKVDIQEALKNPPCIQKTLRIYVFNSFANQNNTIPGNPNADPPTW 227
Query: 239 TLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLYPDNHIIVWENSRS 298
TLKIIGRILEDGVDPDQPG VQK+NPL+PKFSSFFKRVT+SLDQRLYP+N +I+WEN+RS
Sbjct: 228 TLKIIGRILEDGVDPDQPGFVQKANPLHPKFSSFFKRVTVSLDQRLYPENPLIIWENARS 287
Query: 299 PAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYV 358
PAP EGFE+KRKG++EF +IRLEMNYVPEKFKLS LM+VLGIEV+TRPRIIAAIWHYV
Sbjct: 288 PAPQEGFEIKRKGNQEFAASIRLEMNYVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYV 347
Query: 359 KARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQPIHLEHKIKLSGNS 418
KARKLQ+PNDPS F CD LQKVFGEEK+KFTMVSQKIS HLSPP PIHLEHKIKLSGN+
Sbjct: 348 KARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSPPPPIHLEHKIKLSGNN 407
Query: 419 PVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIRKIHEHRRRRAFFLG 478
P +ACYDVLVDVPFPIQR+L+ LLANA+KNKEI+ CDEAIC+AIRKIHEHRRRRAFFLG
Sbjct: 408 PAVSACYDVLVDVPFPIQRDLNNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLG 467
Query: 479 FSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLNRKPAAG 538
FSQSPVEFIN LIESQSKDLK+VAGE SR+AE+ERRSDFFNQPWVEDAVIRYLNR+PAAG
Sbjct: 468 FSQSPVEFINALIESQSKDLKVVAGEASRNAERERRSDFFNQPWVEDAVIRYLNRRPAAG 527
Query: 539 SDAPGS 544
+D PGS
Sbjct: 528 NDGPGS 533
>TAIR|locus:2078713 [details] [associations]
symbol:AT3G01890 "AT3G01890" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF47592 eggNOG:COG5531
HOGENOM:HOG000240746 KO:K11650 ProtClustDB:CLSN2687209
EMBL:BT026139 IPI:IPI00520994 RefSeq:NP_566154.2 UniGene:At.45849
ProteinModelPortal:Q147F4 SMR:Q147F4 EnsemblPlants:AT3G01890.1
GeneID:820093 KEGG:ath:AT3G01890 TAIR:At3g01890 InParanoid:Q147F4
OMA:PAISACY PhylomeDB:Q147F4 Genevestigator:Q147F4 Uniprot:Q147F4
Length = 458
Score = 1476 (524.6 bits), Expect = 1.2e-153, Sum P(2) = 1.2e-153
Identities = 290/397 (73%), Positives = 321/397 (80%)
Query: 144 AMELTSAAXXXXXXX-XXXXXXXXVAAILPESALYTQLLEFEARVDAALTRKKVDIQEAL 202
+MELT A+ VAA+LPESALYTQLLEFE+RVDAAL RKKVDIQ++L
Sbjct: 72 SMELTPASRKKKHKLPDKSSLQERVAAVLPESALYTQLLEFESRVDAALFRKKVDIQDSL 131
Query: 203 KNPPCLQKTLRIYVFNTFANQIKTIPKKPNAEPPTWTLKIIGRILEDGVDPDQPG-MVQK 261
KNPP +QKTLRIYVFNTF+NQI P +PPTWTL+I GR+L DPD G +VQ
Sbjct: 132 KNPPSIQKTLRIYVFNTFSNQI------PGPDPPTWTLRIFGRVL----DPDHTGGLVQN 181
Query: 262 SNPLYPKFSSFFKRVTISLDQRLYPDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRL 321
SNPLYPKFSSFFK + ISLDQ LYP+NH+I W+ RSPAP EGFE+KR G +EF I L
Sbjct: 182 SNPLYPKFSSFFKTLKISLDQSLYPENHLIEWKRDRSPAPLEGFEIKRIGCQEFAATILL 241
Query: 322 EMNYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKV 381
EMNYVPEKFK SP LM+VLGIEVDTRPRIIAAIWHYVK RKLQ+PNDPS F CD L V
Sbjct: 242 EMNYVPEKFKTSPALMQVLGIEVDTRPRIIAAIWHYVKVRKLQNPNDPSFFNCDAALHSV 301
Query: 382 FGEEKMKFTMVSQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELST 441
FGEEKMKFTM+S KISQHLSPP PI L HKIKLSGN+P +ACYDVLVD+P P+Q ELS
Sbjct: 302 FGEEKMKFTMLSHKISQHLSPPPPIQLVHKIKLSGNNPAISACYDVLVDIPAPVQTELSN 361
Query: 442 LLANADKNKEIDQCDEAICSAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLV 501
LLAN +KNKEI+ CDEAIC AIRKIHEHRRRRAFFLGFSQSPVEF N L+ESQ+KDLKLV
Sbjct: 362 LLANPEKNKEIEACDEAICGAIRKIHEHRRRRAFFLGFSQSPVEFTNALMESQTKDLKLV 421
Query: 502 AGEGSRSAEKERRSDFFNQPWVEDAVIRYLNRKPAAG 538
AGE SR+AEKE RS+FFNQPWVEDA IRYLNRKPA G
Sbjct: 422 AGEASRNAEKEGRSEFFNQPWVEDAAIRYLNRKPAGG 458
Score = 44 (20.5 bits), Expect = 1.2e-153, Sum P(2) = 1.2e-153
Identities = 21/60 (35%), Positives = 24/60 (40%)
Query: 1 MSANNN-----NPAKSL----GQTSSPFANAGMGSPSMPMNPGFPQSQAQAQMGAG--FP 49
MS NN P SL G S+ FA + M P+ P F SQ Q G FP
Sbjct: 1 MSGNNELNALKGPQSSLPWPFGMASASFAPSHMAPPNF--QPQFQLSQDQGISAPGRRFP 58
>UNIPROTKB|F1MTG9 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9913 "Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=IEA]
[GO:0032947 "protein complex scaffold" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0006337 "nucleosome
disassembly" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0048096
GO:GO:0006337 SUPFAM:SSF47592 GeneTree:ENSGT00390000017809
IPI:IPI00723099 UniGene:Bt.87407 InterPro:IPR019835 SMART:SM00151
OMA:NTFYPSK EMBL:DAAA02012932 Ensembl:ENSBTAT00000001284
Uniprot:F1MTG9
Length = 515
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 142/369 (38%), Positives = 215/369 (58%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKT 226
+ ++PES Y LL FE ++D + RK++DIQEALK P ++ LRI++ NTF N K+
Sbjct: 137 IRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTF-NPAKS 195
Query: 227 IPKKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY- 285
+ +W L++ GR+LED QK KFSSFFK + I LD+ LY
Sbjct: 196 DAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKR-----KFSSFFKSLVIELDKDLYG 250
Query: 286 PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVD 345
PDNH++ W + + +GF+VKR GD + L ++Y P +FKL P L +LGI
Sbjct: 251 PDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQ 310
Query: 346 TRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQP 405
TRP II A+W Y+K KLQ P++ CD LQ++F ++MKF+ + Q++ L PP+P
Sbjct: 311 TRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEP 370
Query: 406 IHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIRK 465
I + H I + N TACYD+ V+V ++ ++++ L + +EI D I I
Sbjct: 371 IIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIET 430
Query: 466 IHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVED 525
I++ + +R F L F++ P FIN ++SQ +DLK++ S E+ERR++F+ QPW ++
Sbjct: 431 INQLKTQREFMLSFARDPQGFINDWLQSQCRDLKVMTDVVGNS-EEERRAEFYFQPWAQE 489
Query: 526 AVIRYLNRK 534
AV RY K
Sbjct: 490 AVCRYFYSK 498
>UNIPROTKB|Q96GM5 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9606 "Homo sapiens" [GO:0007399 "nervous system
development" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0032947 "protein complex scaffold" evidence=IDA]
[GO:0048096 "chromatin-mediated maintenance of transcription"
evidence=IMP] [GO:0006338 "chromatin remodeling" evidence=IDA;IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF
complex" evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS]
[GO:0003713 "transcription coactivator activity" evidence=NAS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=NAS] [GO:0006337 "nucleosome disassembly"
evidence=IDA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0007399
GO:GO:0006357 GO:GO:0003713 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0032947 EMBL:AC025154 GO:GO:0048096
GO:GO:0006337 SUPFAM:SSF47592 eggNOG:COG5531 CTD:6602
HOGENOM:HOG000240746 KO:K11650 OrthoDB:EOG4DNF48 InterPro:IPR019835
SMART:SM00151 EMBL:AF109733 EMBL:U66617 EMBL:BC009368
IPI:IPI00852816 IPI:IPI00853408 RefSeq:NP_003067.3
RefSeq:NP_620710.2 UniGene:Hs.79335 ProteinModelPortal:Q96GM5
SMR:Q96GM5 DIP:DIP-33390N IntAct:Q96GM5 MINT:MINT-1144212
STRING:Q96GM5 PhosphoSite:Q96GM5 DMDM:238054318 PaxDb:Q96GM5
PRIDE:Q96GM5 DNASU:6602 Ensembl:ENST00000381513
Ensembl:ENST00000394963 GeneID:6602 KEGG:hsa:6602 UCSC:uc001rvx.4
UCSC:uc001rvy.4 GeneCards:GC12P050478 HGNC:HGNC:11106 HPA:HPA004101
MIM:601735 neXtProt:NX_Q96GM5 PharmGKB:PA35956 HOVERGEN:HBG054046
InParanoid:Q96GM5 OMA:NTFYPSK ChiTaRS:SMARCD1 GenomeRNAi:6602
NextBio:25683 ArrayExpress:Q96GM5 Bgee:Q96GM5 CleanEx:HS_SMARCD1
Genevestigator:Q96GM5 Uniprot:Q96GM5
Length = 515
Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
Identities = 141/369 (38%), Positives = 215/369 (58%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKT 226
+ ++PES Y LL FE ++D + RK++DIQEALK P ++ LRI++ NTF N K+
Sbjct: 137 IRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTF-NPAKS 195
Query: 227 IPKKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY- 285
+ +W L++ GR+LED QK KFSSFFK + I LD+ LY
Sbjct: 196 DAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKR-----KFSSFFKSLVIELDKDLYG 250
Query: 286 PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVD 345
PDNH++ W + + +GF+VKR GD + L ++Y P +FKL P L +LGI
Sbjct: 251 PDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQ 310
Query: 346 TRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQP 405
TRP II A+W Y+K KLQ P++ CD LQ++F ++MKF+ + Q++ L PP+P
Sbjct: 311 TRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEP 370
Query: 406 IHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIRK 465
I + H I + N TACYD+ V+V ++ ++++ L + +EI D I I
Sbjct: 371 IIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIET 430
Query: 466 IHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVED 525
I++ + +R F L F++ P FIN ++SQ +DLK + + + E+ERR++F+ QPW ++
Sbjct: 431 INQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEERRAEFYFQPWAQE 489
Query: 526 AVIRYLNRK 534
AV RY K
Sbjct: 490 AVCRYFYSK 498
>MGI|MGI:1933623 [details] [associations]
symbol:Smarcd1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 1"
species:10090 "Mus musculus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=ISO]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0032947
"protein complex scaffold" evidence=ISO] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=IDA] [GO:0071565 "nBAF
complex" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
MGI:MGI:1933623 GO:GO:0007399 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0048096 GO:GO:0006337 SUPFAM:SSF47592
eggNOG:COG5531 GeneTree:ENSGT00390000017809 CTD:6602
HOGENOM:HOG000240746 KO:K11650 OrthoDB:EOG4DNF48 InterPro:IPR019835
SMART:SM00151 HOVERGEN:HBG054046 OMA:NTFYPSK ChiTaRS:SMARCD1
EMBL:M25773 EMBL:U66620 EMBL:BC026783 EMBL:BC059921 EMBL:AK075611
IPI:IPI00121270 IPI:IPI00223126 PIR:A30222 RefSeq:NP_114030.2
UniGene:Mm.273756 PDB:1UHR PDBsum:1UHR ProteinModelPortal:Q61466
SMR:Q61466 IntAct:Q61466 STRING:Q61466 PhosphoSite:Q61466
PaxDb:Q61466 PRIDE:Q61466 Ensembl:ENSMUST00000023759 GeneID:83797
KEGG:mmu:83797 UCSC:uc007xqb.1 InParanoid:Q61466
EvolutionaryTrace:Q61466 NextBio:350782 Bgee:Q61466
Genevestigator:Q61466 GermOnline:ENSMUSG00000023018 Uniprot:Q61466
Length = 515
Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
Identities = 141/369 (38%), Positives = 215/369 (58%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKT 226
+ ++PES Y LL FE ++D + RK++DIQEALK P ++ LRI++ NTF N K+
Sbjct: 137 IRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTF-NPAKS 195
Query: 227 IPKKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY- 285
+ +W L++ GR+LED QK KFSSFFK + I LD+ LY
Sbjct: 196 DAEDGEGTVASWELRVEGRLLEDAALSKYDATKQKR-----KFSSFFKSLVIELDKDLYG 250
Query: 286 PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVD 345
PDNH++ W + + +GF+VKR GD + L ++Y P +FKL P L +LGI
Sbjct: 251 PDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQ 310
Query: 346 TRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQP 405
TRP II A+W Y+K KLQ P++ CD LQ++F ++MKF+ + Q++ L PP+P
Sbjct: 311 TRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPEP 370
Query: 406 IHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIRK 465
I + H I + N TACYD+ V+V ++ ++++ L + +EI D I I
Sbjct: 371 IIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIET 430
Query: 466 IHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVED 525
I++ + +R F L F++ P FIN ++SQ +DLK + + + E+ERR++F+ QPW ++
Sbjct: 431 INQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEERRAEFYFQPWAQE 489
Query: 526 AVIRYLNRK 534
AV RY K
Sbjct: 490 AVCRYFYSK 498
>RGD|1305406 [details] [associations]
symbol:Smarcd1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 1"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006337 "nucleosome disassembly" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0016514 "SWI/SNF complex"
evidence=IEA;ISO] [GO:0032947 "protein complex scaffold"
evidence=IEA;ISO] [GO:0048096 "chromatin-mediated maintenance of
transcription" evidence=IEA;ISO] [GO:0071564 "npBAF complex"
evidence=IEA;ISO] [GO:0071565 "nBAF complex" evidence=IEA;ISO]
InterPro:IPR003121 Pfam:PF02201 RGD:1305406 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0048096 GO:GO:0006337
EMBL:CH474035 SUPFAM:SSF47592 GeneTree:ENSGT00390000017809 CTD:6602
KO:K11650 OrthoDB:EOG4DNF48 InterPro:IPR019835 SMART:SM00151
IPI:IPI00366479 RefSeq:NP_001102222.1 UniGene:Rn.21196
Ensembl:ENSRNOT00000043163 GeneID:363002 KEGG:rno:363002
UCSC:RGD:1305406 NextBio:682087 Uniprot:D3ZBS9
Length = 515
Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
Identities = 141/369 (38%), Positives = 215/369 (58%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKT 226
+ ++PES Y LL FE ++D + RK++DIQEALK P ++ LRI++ NTF N K+
Sbjct: 137 IRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTF-NPAKS 195
Query: 227 IPKKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY- 285
+ +W L++ GR+LED QK KFSSFFK + I LD+ LY
Sbjct: 196 DAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKR-----KFSSFFKSLVIELDKDLYG 250
Query: 286 PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVD 345
PDNH++ W + + +GF+VKR GD + L ++Y P +FKL P L +LGI
Sbjct: 251 PDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQ 310
Query: 346 TRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQP 405
TRP II A+W Y+K KLQ P++ CD LQ++F ++MKF+ + Q++ L PP+P
Sbjct: 311 TRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEP 370
Query: 406 IHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIRK 465
I + H I + N TACYD+ V+V ++ ++++ L + +EI D I I
Sbjct: 371 IIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIET 430
Query: 466 IHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVED 525
I++ + +R F L F++ P FIN ++SQ +DLK + + + E+ERR++F+ QPW ++
Sbjct: 431 INQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEERRAEFYFQPWAQE 489
Query: 526 AVIRYLNRK 534
AV RY K
Sbjct: 490 AVCRYFYSK 498
>UNIPROTKB|H9KZE0 [details] [associations]
symbol:SMARCD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0032947 "protein
complex scaffold" evidence=IEA] [GO:0048096 "chromatin-mediated
maintenance of transcription" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR003121 Pfam:PF02201 SUPFAM:SSF47592
GeneTree:ENSGT00390000017809 InterPro:IPR019835 SMART:SM00151
OMA:NTFYPSK EMBL:AADN02072424 Ensembl:ENSGALT00000010024
Uniprot:H9KZE0
Length = 516
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 141/369 (38%), Positives = 215/369 (58%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKT 226
+ ++PES Y LL FE ++D + RK++DIQEALK P ++ LRI++ NTF N K+
Sbjct: 138 IRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTF-NPAKS 196
Query: 227 IPKKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY- 285
+ +W L++ GR+LED QK KFSSFFK + I LD+ LY
Sbjct: 197 DAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKR-----KFSSFFKSLVIELDKDLYG 251
Query: 286 PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVD 345
PDNH++ W + + +GF+VKR GD + L ++Y P +FKL P L +LGI
Sbjct: 252 PDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQ 311
Query: 346 TRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQP 405
TRP II A+W Y+K KLQ P++ CD LQ++F ++MKF+ + Q++ L PP+P
Sbjct: 312 TRPVIIQALWQYIKTHKLQDPHEREYVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEP 371
Query: 406 IHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIRK 465
I + H I + N TACYD+ V+V ++ ++++ L + +EI D I I
Sbjct: 372 IIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAALDNKIHETIET 431
Query: 466 IHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVED 525
I++ + +R F L F++ P FIN ++SQ +DLK + + + E+ERR++F+ QPW ++
Sbjct: 432 INQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEERRAEFYFQPWAQE 490
Query: 526 AVIRYLNRK 534
AV RY K
Sbjct: 491 AVCRYFYSK 499
>UNIPROTKB|Q2TBN1 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9913 "Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS]
[GO:0071564 "npBAF complex" evidence=ISS] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0007399 "nervous system
development" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0007399 GO:GO:0016568 GO:GO:0071564 GO:GO:0071565
SUPFAM:SSF47592 eggNOG:COG5531 EMBL:BC109890 IPI:IPI00723099
RefSeq:NP_001033648.1 UniGene:Bt.87407 ProteinModelPortal:Q2TBN1
SMR:Q2TBN1 STRING:Q2TBN1 PRIDE:Q2TBN1 GeneID:533232 KEGG:bta:533232
CTD:6602 HOGENOM:HOG000240746 InParanoid:Q2TBN1 KO:K11650
OrthoDB:EOG4DNF48 NextBio:20875968 InterPro:IPR019835 SMART:SM00151
Uniprot:Q2TBN1
Length = 515
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 141/369 (38%), Positives = 214/369 (57%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKT 226
+ ++PES Y LL FE ++D + RK++DIQEALK P ++ LRI++ NTF N K+
Sbjct: 137 IRELVPESQDYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTF-NPAKS 195
Query: 227 IPKKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY- 285
+ +W L++ GR+LED QK KFSSFFK + I LD+ LY
Sbjct: 196 DAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKR-----KFSSFFKSLVIELDKDLYG 250
Query: 286 PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVD 345
PDNH++ W + + +GF+VKR GD + L ++Y P +FKL P L +LGI
Sbjct: 251 PDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQ 310
Query: 346 TRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQP 405
TRP II A+W Y+K KLQ P++ CD LQ++F ++MKF+ + Q++ L PP+P
Sbjct: 311 TRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEP 370
Query: 406 IHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIRK 465
I + H I + N TACYD+ +V ++ ++++ L + +EI D I I
Sbjct: 371 IIINHVISVDPNDQKKTACYDIDEEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIET 430
Query: 466 IHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVED 525
I++ + +R F L F++ P FIN ++SQ +DLK++ S E+ERR++F+ QPW ++
Sbjct: 431 INQLKTQREFMLSFARDPQGFINDWLQSQCRDLKVMTDVVGNS-EEERRAEFYFQPWAQE 489
Query: 526 AVIRYLNRK 534
AV RY K
Sbjct: 490 AVCRYFYSK 498
>ZFIN|ZDB-GENE-080509-2 [details] [associations]
symbol:smarcd3b "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily d, member 3b"
species:7955 "Danio rerio" [GO:0007368 "determination of left/right
symmetry" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IGI] [GO:0055007 "cardiac muscle cell differentiation"
evidence=IGI] InterPro:IPR003121 Pfam:PF02201
ZFIN:ZDB-GENE-080509-2 GO:GO:0003007 GO:GO:0055007 GO:GO:0007368
SUPFAM:SSF47592 eggNOG:COG5531 GeneTree:ENSGT00390000017809
HOGENOM:HOG000240746 KO:K11650 InterPro:IPR019835 SMART:SM00151
HOVERGEN:HBG054046 OrthoDB:EOG4QFWD6 OMA:PAISACY EMBL:BX005319
EMBL:BX322787 EMBL:EF552706 IPI:IPI00501254 RefSeq:NP_001120778.1
UniGene:Dr.28422 STRING:B2KL77 Ensembl:ENSDART00000006724
GeneID:562140 KEGG:dre:562140 CTD:562140 NextBio:20884266
Uniprot:B2KL77
Length = 476
Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 140/365 (38%), Positives = 216/365 (59%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKT 226
+ ++PES Y LL FE ++D + RK+VDIQEALK P ++ LR+Y+ NTF N K
Sbjct: 105 IRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF-NAAKP 163
Query: 227 IPKKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY- 285
+ +W L++ G++L+D PG +++ KFSSFFK + I LD+ LY
Sbjct: 164 DAEDSEGSIASWELRVEGKLLDD------PGKMKR------KFSSFFKSLVIELDKDLYG 211
Query: 286 PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVD 345
PDNH++ W + + +GF+VKR GD + L ++Y P +FKL P L +LGI
Sbjct: 212 PDNHLVEWHRTGTTQETDGFQVKRPGDVNVRCTLLLMLDYQPPQFKLDPRLARLLGIHTQ 271
Query: 346 TRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQP 405
TR II A+W YVK KLQ +D CD Q++F ++KF+ + Q+++ L PP P
Sbjct: 272 TRSSIIQALWQYVKTNKLQDSHDKEYINCDKYFQQIFDCPRLKFSEIPQRLTNLLLPPDP 331
Query: 406 IHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIRK 465
I + H I + N TACYD+ V+V P++ ++S+ L + +EI D I I
Sbjct: 332 IVINHIISVDPNDQKKTACYDIDVEVEDPLKAQMSSFLLSTANQQEIASLDNKIHETIES 391
Query: 466 IHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVED 525
I++ + +R F L FS+ P +I ++SQS+DLKL+ + + + E+ERR++F++QPW ++
Sbjct: 392 INQLKIQRDFMLSFSRDPKGYIQDWLKSQSRDLKLMT-DVAGNPEEERRAEFYHQPWSQE 450
Query: 526 AVIRY 530
AV RY
Sbjct: 451 AVSRY 455
>FB|FBgn0025463 [details] [associations]
symbol:Bap60 "Brahma associated protein 60kD" species:7227
"Drosophila melanogaster" [GO:0003713 "transcription coactivator
activity" evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0035060 "brahma complex" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0010628 "positive
regulation of gene expression" evidence=IGI] [GO:0001085 "RNA
polymerase II transcription factor binding" evidence=IPI]
[GO:0031453 "positive regulation of heterochromatin assembly"
evidence=IMP] [GO:0008134 "transcription factor binding"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IDA] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0048666 "neuron
development" evidence=IMP] [GO:0007517 "muscle organ development"
evidence=IMP] InterPro:IPR003121 Pfam:PF02201 GO:GO:0045893
GO:GO:0003677 GO:GO:0048813 GO:GO:0007517 GO:GO:0035060
SUPFAM:SSF47592 eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151
EMBL:AF071503 ProteinModelPortal:O76490 SMR:O76490 IntAct:O76490
STRING:O76490 PaxDb:O76490 PRIDE:O76490 FlyBase:FBgn0025463
InParanoid:O76490 OrthoDB:EOG4HDR8S ArrayExpress:O76490 Bgee:O76490
GO:GO:0031453 Uniprot:O76490
Length = 515
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 145/383 (37%), Positives = 225/383 (58%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKT 226
V ++PES Y LL FE ++DA + RK++DIQEALK P ++ LRI++ NTF +
Sbjct: 139 VRDLVPESQAYMDLLTFERKLDATIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPSKEP 198
Query: 227 IPKKPNAEPPTWTLKIIGRILEDGV-DPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY 285
+W L++ GR+LEDG DP+ +++ KFSSFFK + I LD+ LY
Sbjct: 199 TNDGEEGAVASWELRVEGRLLEDGKGDPNTK--IKR------KFSSFFKSLVIELDKELY 250
Query: 286 -PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEV 344
PDNH++ W + + +GF+VKR GD+ I L ++Y P +FKL P L +LG+
Sbjct: 251 GPDNHLVEWHRTHTTQETDGFQVKRPGDRNVRCTILLLLDYQPLQFKLDPRLARLLGVHT 310
Query: 345 DTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQ 404
TRP II+A+W Y+K KLQ ++ CD L+++F ++MKF + Q+++ L PP
Sbjct: 311 QTRPVIISALWQYIKTHKLQDAHEREYINCDKYLEQIFSCQRMKFAEIPQRLNPLLHPPD 370
Query: 405 PIHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIR 464
PI + H I+ SG TACYD+ V+V ++ ++++ L + +EI D I +
Sbjct: 371 PIVINHFIE-SGAENKQTACYDIDVEVDDTLKNQMNSFLMSTASQQEIQGLDTKIHETVD 429
Query: 465 KIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVE 524
I++ R FFL F++ P FI+ I S+++DLKL+ + + + E+ERR++F+ QPW
Sbjct: 430 TINQMNTNREFFLSFAKDPQMFIHRWIISETRDLKLMT-DVAGNPEEERRAEFYYQPWTH 488
Query: 525 DAVIRY----LNRKPAAGSDAPG 543
+AV RY +N+K A A G
Sbjct: 489 EAVSRYFFTKVNQKRAELEQALG 511
>UNIPROTKB|F1NJN5 [details] [associations]
symbol:SMARCD3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0035257 "nuclear hormone
receptor binding" evidence=IEA] [GO:0042692 "muscle cell
differentiation" evidence=IEA] [GO:0043393 "regulation of protein
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0000790 "nuclear chromatin" evidence=IEA] [GO:0002052 "positive
regulation of neuroblast proliferation" evidence=IEA] [GO:0003139
"secondary heart field specification" evidence=IEA] [GO:0003219
"cardiac right ventricle formation" evidence=IEA] [GO:0003407
"neural retina development" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0005737
GO:GO:0045893 GO:GO:0043393 GO:GO:0006351 GO:GO:0006338
GO:GO:0000790 GO:GO:0071564 GO:GO:0071565 GO:GO:0006337
GO:GO:0030374 SUPFAM:SSF47592 GeneTree:ENSGT00390000017809
InterPro:IPR019835 SMART:SM00151 OMA:PLKSQMS EMBL:AADN02078761
EMBL:AADN02078762 EMBL:AADN02078763 EMBL:AADN02078764
EMBL:AADN02078765 EMBL:AADN02078766 IPI:IPI00583326
Ensembl:ENSGALT00000021298 Uniprot:F1NJN5
Length = 462
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 137/365 (37%), Positives = 213/365 (58%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKT 226
+ ++PES Y LL FE ++D + RK+VDIQEALK P ++ LR+Y+ NTF N K+
Sbjct: 91 IRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF-NPAKS 149
Query: 227 IPKKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY- 285
+ +W L++ G++L+D + K KFSSFFK + I LD+ LY
Sbjct: 150 DADDSDGSIASWELRVEGKLLDD---------LSKQKR---KFSSFFKSLVIELDKDLYG 197
Query: 286 PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVD 345
PDNH++ W + + +GF+VKR GD + L ++Y P +FKL P L +LGI
Sbjct: 198 PDNHLVEWHRTPTTQETDGFQVKRPGDVSVRCTLLLMLDYQPPQFKLDPRLARLLGIHTQ 257
Query: 346 TRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQP 405
TR II A+W Y+K KLQ +D CD Q++F ++KF+ + Q+++ L PP P
Sbjct: 258 TRSAIIQALWQYIKTNKLQDSHDKEYINCDKYFQQIFDCPRLKFSEIPQRLTNLLLPPDP 317
Query: 406 IHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIRK 465
I + H I + N TACYD+ V+V P++ ++S+ L + +EI D I I
Sbjct: 318 IVINHIISVDPNDQKKTACYDIDVEVEDPLKGQMSSFLLSTANQQEITALDNKIHETIES 377
Query: 466 IHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVED 525
I++ + +R F L FS+ P +I L+ SQS+DLK++ + + E+ERR++F+++PW ++
Sbjct: 378 INQLKIQRDFMLSFSKDPKGYIQDLLRSQSRDLKVMT-DVVGNPEEERRAEFYHEPWSQE 436
Query: 526 AVIRY 530
AV RY
Sbjct: 437 AVSRY 441
>WB|WBGene00044072 [details] [associations]
symbol:ham-3 species:6239 "Caenorhabditis elegans"
[GO:0040011 "locomotion" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0007413 "axonal
fasciculation" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0070603 "SWI/SNF superfamily-type complex"
evidence=ISS] [GO:0001085 "RNA polymerase II transcription factor
binding" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0006915 GO:GO:0002119 GO:GO:0010171 GO:GO:0040011
GO:GO:0006357 GO:GO:0040035 GO:GO:0007413 GO:GO:0001085
SUPFAM:SSF47592 EMBL:Z47357 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
InterPro:IPR019835 SMART:SM00151 OMA:MRFMEIP GO:GO:0070603
PIR:T27696 RefSeq:NP_499250.1 ProteinModelPortal:Q09646 SMR:Q09646
STRING:Q09646 PaxDb:Q09646 EnsemblMetazoa:ZK1128.5 GeneID:176426
KEGG:cel:CELE_ZK1128.5 UCSC:ZK1128.5 CTD:176426 WormBase:ZK1128.5
InParanoid:Q09646 NextBio:892530 Uniprot:Q09646
Length = 446
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 142/370 (38%), Positives = 213/370 (57%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKT 226
V ++PES Y LL FE ++D+ +TRKK+D+QEALK P ++K LRIY+ +TF +
Sbjct: 63 VRELVPESQAYMDLLAFEQKLDSTITRKKIDVQEALKRPQKIKKRLRIYISHTFIAGKEP 122
Query: 227 IPKKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY- 285
+ +A P W L++ GR+L+D P G + P KFSSFFK + I LD+ +Y
Sbjct: 123 EKEGDDASVPMWELRVEGRLLDDMQHPTV-GANPRPAPKR-KFSSFFKSLVIELDKDIYG 180
Query: 286 PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVD 345
PDNH++ W + +GF+VKR GD+ I L ++Y P KFKL P L +VLGI +
Sbjct: 181 PDNHLVEWHRTPQTNETDGFQVKRPGDRPVKCTILLLLDYQPMKFKLHPRLAKVLGIAAE 240
Query: 346 TRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQP 405
TRPRII A+W Y+K KLQ P D D L++ FG KM+F + Q++ Q L P P
Sbjct: 241 TRPRIIEALWQYIKTHKLQDPQDRDTINNDLFLEQCFGVSKMRFMEIPQRLHQLLQQPDP 300
Query: 406 IHLEHKIKLSGNSPVGT-ACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIR 464
+ L H I+ + T ACYD+ V++ P++++++ + N +I D+ I +
Sbjct: 301 LVLNHIIQRPDDGQDKTSACYDIDVELEDPVKQQMANFVHNQTNANDIQLLDQKIFDLVD 360
Query: 465 KIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVE 524
+I+E + RR FFL FS P FI + SQ+ DLK + E S E +R + ++ +
Sbjct: 361 QINEMKLRRDFFLRFSNEPSGFIKKWVVSQNSDLKTLT-ESSGDGESDRYATTYSTTDTD 419
Query: 525 DAVIRYLNRK 534
+ V RY+ +K
Sbjct: 420 EGVSRYMYQK 429
>UNIPROTKB|Q17QK5 [details] [associations]
symbol:SMARCD3 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 3"
species:9913 "Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043393 "regulation of protein binding" evidence=IEA]
[GO:0042692 "muscle cell differentiation" evidence=IEA] [GO:0035257
"nuclear hormone receptor binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003407 "neural retina development"
evidence=IEA] [GO:0003219 "cardiac right ventricle formation"
evidence=IEA] [GO:0003139 "secondary heart field specification"
evidence=IEA] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0005737
GO:GO:0045893 GO:GO:0043393 GO:GO:0006351 GO:GO:0006338
GO:GO:0042692 GO:GO:0000790 GO:GO:0071564 GO:GO:0003407
GO:GO:0071565 GO:GO:0006337 GO:GO:0002052 GO:GO:0030374
GO:GO:0003139 SUPFAM:SSF47592 GO:GO:0003219
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746
InterPro:IPR019835 SMART:SM00151 HOVERGEN:HBG054046 OMA:PLKSQMS
EMBL:DAAA02012020 EMBL:DAAA02012021 EMBL:DAAA02012022
EMBL:DAAA02012023 EMBL:DAAA02012024 EMBL:BC118305 IPI:IPI00788564
UniGene:Bt.53201 SMR:Q17QK5 STRING:Q17QK5
Ensembl:ENSBTAT00000028051 Uniprot:Q17QK5
Length = 470
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 135/365 (36%), Positives = 215/365 (58%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKT 226
+ ++PES Y LL FE ++D + RK+VDIQEALK P ++ LR+Y+ NTF N K
Sbjct: 99 IRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF-NPAKP 157
Query: 227 IPKKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY- 285
+ + +W L++ G++L+D P + QK KFSSFFK + I LD+ LY
Sbjct: 158 DAEDSDGSIASWELRVEGKLLDD---PSK----QKR-----KFSSFFKSLVIELDKDLYG 205
Query: 286 PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVD 345
PDNH++ W + + +GF+VKR GD + L ++Y P +FKL P L +LG+
Sbjct: 206 PDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQ 265
Query: 346 TRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQP 405
+R I+ A+W YVK +LQ +D D Q++F ++KF+ + Q+++ L PP P
Sbjct: 266 SRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDP 325
Query: 406 IHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIRK 465
I + H I + + TACYD+ V+V P++ ++S+ L + +EI D I I
Sbjct: 326 IVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIES 385
Query: 466 IHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVED 525
I++ + +R F L FS+ P +I L+ SQS+DLK++ + + + E+ERR++F++QPW ++
Sbjct: 386 INQLKIQRDFMLSFSRDPKGYIQDLLRSQSRDLKVMT-DVAGNPEEERRAEFYHQPWSQE 444
Query: 526 AVIRY 530
AV RY
Sbjct: 445 AVSRY 449
>UNIPROTKB|F1SSN0 [details] [associations]
symbol:SMARCD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0043393 "regulation
of protein binding" evidence=IEA] [GO:0042692 "muscle cell
differentiation" evidence=IEA] [GO:0035257 "nuclear hormone
receptor binding" evidence=IEA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
[GO:0016922 "ligand-dependent nuclear receptor binding"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003407 "neural retina development"
evidence=IEA] [GO:0003219 "cardiac right ventricle formation"
evidence=IEA] [GO:0003139 "secondary heart field specification"
evidence=IEA] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0005737
GO:GO:0045893 GO:GO:0043393 GO:GO:0006351 GO:GO:0006338
GO:GO:0042692 GO:GO:0000790 GO:GO:0071564 GO:GO:0003407
GO:GO:0071565 GO:GO:0006337 GO:GO:0002052 GO:GO:0030374
GO:GO:0003139 SUPFAM:SSF47592 GO:GO:0003219
GeneTree:ENSGT00390000017809 InterPro:IPR019835 SMART:SM00151
OMA:PLKSQMS EMBL:FP102583 Ensembl:ENSSSCT00000017896 Uniprot:F1SSN0
Length = 486
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 135/365 (36%), Positives = 215/365 (58%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKT 226
+ ++PES Y LL FE ++D + RK+VDIQEALK P ++ LR+Y+ NTF N K
Sbjct: 115 IRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF-NPAKP 173
Query: 227 IPKKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY- 285
+ + +W L++ G++L+D P + QK KFSSFFK + I LD+ LY
Sbjct: 174 DAEDSDGSIASWELRVEGKLLDD---PSK----QKR-----KFSSFFKSLVIELDKDLYG 221
Query: 286 PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVD 345
PDNH++ W + + +GF+VKR GD + L ++Y P +FKL P L +LG+
Sbjct: 222 PDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQ 281
Query: 346 TRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQP 405
+R I+ A+W YVK +LQ +D D Q++F ++KF+ + Q+++ L PP P
Sbjct: 282 SRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDP 341
Query: 406 IHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIRK 465
I + H I + + TACYD+ V+V P++ ++S+ L + +EI D I I
Sbjct: 342 IVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIES 401
Query: 466 IHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVED 525
I++ + +R F L FS+ P +I L+ SQS+DLK++ + + + E+ERR++F++QPW ++
Sbjct: 402 INQLKIQRDFMLSFSRDPKGYIQDLLRSQSRDLKVMT-DVAGNPEEERRAEFYHQPWSQE 460
Query: 526 AVIRY 530
AV RY
Sbjct: 461 AVSRY 465
>UNIPROTKB|Q6STE5 [details] [associations]
symbol:SMARCD3 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 3"
species:9606 "Homo sapiens" [GO:0003139 "secondary heart field
specification" evidence=IEA] [GO:0003219 "cardiac right ventricle
formation" evidence=IEA] [GO:0042692 "muscle cell differentiation"
evidence=IEA] [GO:0043393 "regulation of protein binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0016514
"SWI/SNF complex" evidence=IDA;NAS] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0005102 "receptor binding"
evidence=IPI] [GO:0035257 "nuclear hormone receptor binding"
evidence=IPI] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0071565 "nBAF complex"
evidence=ISS] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid
metabolic process" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003713 "transcription coactivator activity"
evidence=NAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IMP;NAS] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IC;IDA] [GO:0030374 "ligand-dependent nuclear receptor
transcription coactivator activity" evidence=IMP] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0003407 "neural retina development"
evidence=IEP] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=IDA] Reactome:REACT_111217
InterPro:IPR003121 Pfam:PF02201 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0005654 GO:GO:0044281 GO:GO:0043393
GO:GO:0044255 GO:GO:0006357 GO:GO:0006351 EMBL:CH471173
EMBL:AC021097 GO:GO:0006338 GO:GO:0042692 GO:GO:0000790
GO:GO:0003713 GO:GO:0071564 GO:GO:0016514 GO:GO:0003407
GO:GO:0071565 GO:GO:0006337 GO:GO:0002052 GO:GO:0030374
GO:GO:0003139 SUPFAM:SSF47592 GO:GO:0003219 EMBL:AC005486
eggNOG:COG5531 KO:K11650 InterPro:IPR019835 SMART:SM00151
HOVERGEN:HBG054046 EMBL:U66619 EMBL:AY450430 EMBL:AY450431
EMBL:BC002628 EMBL:BC110350 IPI:IPI00106988 IPI:IPI00456146
RefSeq:NP_001003801.1 RefSeq:NP_001003802.1 RefSeq:NP_003069.2
UniGene:Hs.647067 ProteinModelPortal:Q6STE5 SMR:Q6STE5
DIP:DIP-33012N IntAct:Q6STE5 STRING:Q6STE5 PhosphoSite:Q6STE5
DMDM:57013057 PaxDb:Q6STE5 PRIDE:Q6STE5 DNASU:6604
Ensembl:ENST00000262188 Ensembl:ENST00000356800
Ensembl:ENST00000392811 GeneID:6604 KEGG:hsa:6604 UCSC:uc003wjs.3
UCSC:uc003wjt.3 CTD:6604 GeneCards:GC07M150935 HGNC:HGNC:11108
MIM:601737 neXtProt:NX_Q6STE5 PharmGKB:PA35958 InParanoid:Q6STE5
OMA:PLKSQMS OrthoDB:EOG4QFWD6 ChiTaRS:SMARCD3 GenomeRNAi:6604
NextBio:25695 ArrayExpress:Q6STE5 Bgee:Q6STE5 CleanEx:HS_SMARCD3
Genevestigator:Q6STE5 GermOnline:ENSG00000082014 Uniprot:Q6STE5
Length = 483
Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
Identities = 134/365 (36%), Positives = 215/365 (58%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKT 226
+ ++PES Y LL FE ++D + RK+VDIQEALK P ++ LR+Y+ NTF N K
Sbjct: 112 IRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF-NPAKP 170
Query: 227 IPKKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY- 285
+ + +W L++ G++L+D P + QK KFSSFFK + I LD+ LY
Sbjct: 171 DAEDSDGSIASWELRVEGKLLDD---PSK----QKR-----KFSSFFKSLVIELDKDLYG 218
Query: 286 PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVD 345
PDNH++ W + + +GF+VKR GD + L ++Y P +FKL P L +LG+
Sbjct: 219 PDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQ 278
Query: 346 TRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQP 405
+R I+ A+W YVK +LQ +D D Q++F ++KF+ + Q+++ L PP P
Sbjct: 279 SRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDP 338
Query: 406 IHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIRK 465
I + H I + + TACYD+ V+V P++ ++S+ L + +EI D I I
Sbjct: 339 IVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIES 398
Query: 466 IHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVED 525
I++ + +R F L FS+ P ++ L+ SQS+DLK++ + + + E+ERR++F++QPW ++
Sbjct: 399 INQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMT-DVAGNPEEERRAEFYHQPWSQE 457
Query: 526 AVIRY 530
AV RY
Sbjct: 458 AVSRY 462
>MGI|MGI:1914243 [details] [associations]
symbol:Smarcd3 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 3"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=ISO] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0003139 "secondary heart field specification"
evidence=IMP] [GO:0003219 "cardiac right ventricle formation"
evidence=IMP] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0016514 "SWI/SNF
complex" evidence=ISO] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016922 "ligand-dependent nuclear receptor
binding" evidence=ISO] [GO:0030374 "ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISO]
[GO:0035257 "nuclear hormone receptor binding" evidence=ISO]
[GO:0042692 "muscle cell differentiation" evidence=IMP] [GO:0043393
"regulation of protein binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO;IDA]
[GO:0071564 "npBAF complex" evidence=ISO;IDA] [GO:0071565 "nBAF
complex" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
MGI:MGI:1914243 GO:GO:0005737 GO:GO:0045893 GO:GO:0043393
GO:GO:0006351 GO:GO:0006338 GO:GO:0042692 GO:GO:0000790
GO:GO:0071564 GO:GO:0003407 GO:GO:0071565 GO:GO:0006337
GO:GO:0002052 GO:GO:0030374 GO:GO:0003139 SUPFAM:SSF47592
GO:GO:0003219 eggNOG:COG5531 GeneTree:ENSGT00390000017809
HOGENOM:HOG000240746 KO:K11650 InterPro:IPR019835 SMART:SM00151
HOVERGEN:HBG054046 CTD:6604 OMA:PLKSQMS OrthoDB:EOG4QFWD6
EMBL:AK005094 EMBL:AK019374 EMBL:BC013122 EMBL:BC060525
IPI:IPI00467181 RefSeq:NP_080167.3 UniGene:Mm.436539
ProteinModelPortal:Q6P9Z1 SMR:Q6P9Z1 DIP:DIP-48886N STRING:Q6P9Z1
PhosphoSite:Q6P9Z1 PaxDb:Q6P9Z1 PRIDE:Q6P9Z1
Ensembl:ENSMUST00000030791 GeneID:66993 KEGG:mmu:66993
UCSC:uc008wsd.1 InParanoid:Q6P9Z1 NextBio:323242 Bgee:Q6P9Z1
Genevestigator:Q6P9Z1 GermOnline:ENSMUSG00000028949 Uniprot:Q6P9Z1
Length = 483
Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
Identities = 134/365 (36%), Positives = 215/365 (58%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKT 226
+ ++PES Y LL FE ++D + RK+VDIQEALK P ++ LR+Y+ NTF N K
Sbjct: 112 IRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF-NPAKP 170
Query: 227 IPKKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY- 285
+ + +W L++ G++L+D P + QK KFSSFFK + I LD+ LY
Sbjct: 171 DAEDSDGSIASWELRVEGKLLDD---PSK----QKR-----KFSSFFKSLVIELDKDLYG 218
Query: 286 PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVD 345
PDNH++ W + + +GF+VKR GD + L ++Y P +FKL P L +LG+
Sbjct: 219 PDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQ 278
Query: 346 TRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQP 405
+R I+ A+W YVK +LQ +D D Q++F ++KF+ + Q+++ L PP P
Sbjct: 279 SRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDP 338
Query: 406 IHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIRK 465
I + H I + + TACYD+ V+V P++ ++S+ L + +EI D I I
Sbjct: 339 IVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIES 398
Query: 466 IHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVED 525
I++ + +R F L FS+ P ++ L+ SQS+DLK++ + + + E+ERR++F++QPW ++
Sbjct: 399 INQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMT-DVAGNPEEERRAEFYHQPWSQE 457
Query: 526 AVIRY 530
AV RY
Sbjct: 458 AVSRY 462
>RGD|1311869 [details] [associations]
symbol:Smarcd3 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 3"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=ISO] [GO:0003139 "secondary heart field specification"
evidence=IEA;ISO] [GO:0003219 "cardiac right ventricle formation"
evidence=IEA;ISO] [GO:0003407 "neural retina development"
evidence=IEA;ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005102 "receptor binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006337
"nucleosome disassembly" evidence=IEA;ISO] [GO:0006338 "chromatin
remodeling" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IEA;ISO]
[GO:0008150 "biological_process" evidence=ND] [GO:0016514 "SWI/SNF
complex" evidence=ISO] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA;ISO] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity"
evidence=IEA;ISO] [GO:0035257 "nuclear hormone receptor binding"
evidence=IEA;ISO] [GO:0042692 "muscle cell differentiation"
evidence=IEA;ISO] [GO:0043393 "regulation of protein binding"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA;ISO] [GO:0071564 "npBAF
complex" evidence=IEA;ISO] [GO:0071565 "nBAF complex"
evidence=IEA;ISO] InterPro:IPR003121 Pfam:PF02201 RGD:1311869
EMBL:CH474020 SUPFAM:SSF47592 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
InterPro:IPR019835 SMART:SM00151 HOVERGEN:HBG054046 CTD:6604
OrthoDB:EOG4QFWD6 EMBL:BC085349 IPI:IPI00951770
RefSeq:NP_001011966.1 UniGene:Rn.20043 SMR:Q5U3Y2 STRING:Q5U3Y2
Ensembl:ENSRNOT00000066598 GeneID:296732 KEGG:rno:296732
InParanoid:Q5U3Y2 NextBio:641725 Genevestigator:Q5U3Y2
Uniprot:Q5U3Y2
Length = 470
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 134/365 (36%), Positives = 215/365 (58%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKT 226
+ ++PES Y LL FE ++D + RK+VDIQEALK P ++ LR+Y+ NTF N K
Sbjct: 99 IRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF-NPAKP 157
Query: 227 IPKKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY- 285
+ + +W L++ G++L+D P + QK KFSSFFK + I LD+ LY
Sbjct: 158 DAEDSDGSIASWELRVEGKLLDD---PSK----QKR-----KFSSFFKSLVIELDKDLYG 205
Query: 286 PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVD 345
PDNH++ W + + +GF+VKR GD + L ++Y P +FKL P L +LG+
Sbjct: 206 PDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQ 265
Query: 346 TRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQP 405
+R I+ A+W YVK +LQ +D D Q++F ++KF+ + Q+++ L PP P
Sbjct: 266 SRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTGLLLPPDP 325
Query: 406 IHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIRK 465
I + H I + + TACYD+ V+V P++ ++S+ L + +EI D I I
Sbjct: 326 IVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIES 385
Query: 466 IHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVED 525
I++ + +R F L FS+ P ++ L+ SQS+DLK++ + + + E+ERR++F++QPW ++
Sbjct: 386 INQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMT-DVAGNPEEERRAEFYHQPWSQE 444
Query: 526 AVIRY 530
AV RY
Sbjct: 445 AVSRY 449
>UNIPROTKB|E1C555 [details] [associations]
symbol:SMARCD2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0006338 GO:GO:0016514 GO:GO:0006337 SUPFAM:SSF47592
GeneTree:ENSGT00390000017809 InterPro:IPR019835 SMART:SM00151
OMA:TQTRASI EMBL:AADN02056697 EMBL:AADN02056698 EMBL:AADN02056699
EMBL:AADN02056700 EMBL:AADN02056701 EMBL:AADN02056702
IPI:IPI00593811 Ensembl:ENSGALT00000000495 NextBio:20829314
Uniprot:E1C555
Length = 475
Score = 619 (223.0 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
Identities = 133/373 (35%), Positives = 212/373 (56%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKT 226
+ ++PES Y LL FE ++D + RK+++IQEA+K P ++ LRIY+ NTF
Sbjct: 105 IRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFT----- 159
Query: 227 IPKKPNAEP----PTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQ 282
P K E +W L++ G++LED P + QK KFSSFFK + I LD+
Sbjct: 160 -PAKEEGEGGERVASWELRVEGKLLED---PSK----QKR-----KFSSFFKSLVIELDK 206
Query: 283 RLY-PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLG 341
LY PDNH++ W + +GF+VKR GD + L +++ P ++KL P L +LG
Sbjct: 207 ELYGPDNHLVEWHRLPTTQETDGFQVKRPGDVNVKCTLLLMLDHQPPQYKLDPRLARLLG 266
Query: 342 IEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLS 401
+ TR I+ A+W Y+K KLQ ++ C+ +++F +M+F+ + K++ L
Sbjct: 267 VHTQTRASIMQALWLYIKHNKLQDSHEKEYINCNRYFRQIFNCVRMRFSEIPMKLAGLLQ 326
Query: 402 PPQPIHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICS 461
P PI + H I + N TACYD+ V+V P++ ++S LA+ +EI D I
Sbjct: 327 HPDPIIINHTISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDAKIHE 386
Query: 462 AIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQP 521
I I++ + +R F L FS +P +FI I+SQ +DLK++ + + E+ERR++F+ QP
Sbjct: 387 TIESINQLKTQRDFMLSFSNNPQDFIQEWIKSQRRDLKIIT-DVIGNPEEERRAEFYQQP 445
Query: 522 WVEDAVIRYLNRK 534
W ++AV R++ K
Sbjct: 446 WAQEAVGRHIFAK 458
Score = 40 (19.1 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 1 MSANNNNPAKSLGQTSSPFANAGMGSPSMPMNPGFPQS 38
M + P L Q P A G+ S P+ PG PQS
Sbjct: 32 MPPGSRMPMAGL-QVGPPGAPP-YGAAS-PLRPGLPQS 66
>MGI|MGI:1933621 [details] [associations]
symbol:Smarcd2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 2"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016514 "SWI/SNF
complex" evidence=ISO] [GO:0016568 "chromatin modification"
evidence=IEA] InterPro:IPR003121 Pfam:PF02201 MGI:MGI:1933621
GO:GO:0006355 GO:GO:0006351 GO:GO:0006338 GO:GO:0016514
GO:GO:0006337 SUPFAM:SSF47592 EMBL:AL604045
GermOnline:ENSMUSG00000040699 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
HOVERGEN:HBG054046 CTD:6603 OMA:TQTRASI OrthoDB:EOG4WQ12P
EMBL:BC005732 IPI:IPI00115461 IPI:IPI00649685 RefSeq:NP_001123659.1
RefSeq:NP_114084.2 UniGene:Mm.21772 ProteinModelPortal:Q99JR8
SMR:Q99JR8 DIP:DIP-58950N IntAct:Q99JR8 STRING:Q99JR8
PhosphoSite:Q99JR8 PaxDb:Q99JR8 PRIDE:Q99JR8 DNASU:83796
Ensembl:ENSMUST00000021052 Ensembl:ENSMUST00000106843 GeneID:83796
KEGG:mmu:83796 InParanoid:B1ARJ6 NextBio:350778 Bgee:Q99JR8
Genevestigator:Q99JR8 Uniprot:Q99JR8
Length = 531
Score = 592 (213.5 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
Identities = 130/379 (34%), Positives = 212/379 (55%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTF------ 220
+ ++PES Y LL FE ++D + RK+++IQEA+K P ++ LRIY+ NTF
Sbjct: 149 IRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAD 208
Query: 221 ---ANQIKTIPKKPNAEP-PTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRV 276
A T P A+ +W L++ G++L+D P + QK KFSSFFK +
Sbjct: 209 GDNAGTAGTPGGTPAADKVASWELRVEGKLLDD---PSK----QKR-----KFSSFFKSL 256
Query: 277 TISLDQRLY-PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPP 335
I LD+ LY PDNH++ W + +GF+VKR GD + L +++ P ++KL P
Sbjct: 257 VIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPR 316
Query: 336 LMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQK 395
L +LG+ TR I+ A+W Y+K +LQ ++ C+ +++F +++F+ + K
Sbjct: 317 LARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMK 376
Query: 396 ISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQC 455
++ L P PI + H I + N TACYD+ V+V P++ ++S LA+ +EI
Sbjct: 377 LAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASL 436
Query: 456 DEAICSAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRS 515
D I I I++ + +R F L FS P +FI + SQ +DLK++ + + E+ERR+
Sbjct: 437 DVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRA 495
Query: 516 DFFNQPWVEDAVIRYLNRK 534
F++QPW ++AV R++ K
Sbjct: 496 AFYHQPWAQEAVGRHIFAK 514
Score = 39 (18.8 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 22 AGMGSPSMPMNPGFPQSQA 40
A +G+P P PG S A
Sbjct: 23 AALGAPPPPAGPGMLPSPA 41
>WB|WBGene00015971 [details] [associations]
symbol:swsn-2.2 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0070603 "SWI/SNF superfamily-type
complex" evidence=ISS] [GO:0001085 "RNA polymerase II transcription
factor binding" evidence=ISS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR003121 Pfam:PF02201 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006357 GO:GO:0040035 GO:GO:0001085
SUPFAM:SSF47592 EMBL:FO080611 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
InterPro:IPR019835 SMART:SM00151 OMA:TDKNIPD PIR:T15185
RefSeq:NP_491329.2 ProteinModelPortal:O02101 SMR:O02101
MINT:MINT-6668665 STRING:O02101 PaxDb:O02101
EnsemblMetazoa:C18E3.2.1 EnsemblMetazoa:C18E3.2.2
EnsemblMetazoa:C18E3.2.3 GeneID:172018 KEGG:cel:CELE_C18E3.2
UCSC:C18E3.2.2 CTD:172018 WormBase:C18E3.2 InParanoid:O02101
NextBio:873681 GO:GO:0070603 Uniprot:O02101
Length = 449
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 136/367 (37%), Positives = 205/367 (55%)
Query: 172 PESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKTIPKKP 231
P++ Y LL E ++D+ L+RKK+DIQEALK P ++K LRIY+ +TF + +
Sbjct: 71 PDAENYMALLASEQKLDSTLSRKKLDIQEALKRPSKVKKRLRIYISHTFIEEKQPEKDTD 130
Query: 232 NAEPPTWTLKIIGRILEDGVDPDQPGMV-QKSNPLYPKFSSFFKRVTISLDQRLY-PDNH 289
A P W L++ GR+L++ P P + Q+ P KFSSFFK + I LD+ +Y PD H
Sbjct: 131 EASLPMWELRVEGRLLDE--QPPAPAIPGQRPVPKR-KFSSFFKSLVIELDKEMYGPDQH 187
Query: 290 IIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDTRPR 349
++ W + +GF+VKR GD+ I L ++ P KFKL P L +VLGI +TRP+
Sbjct: 188 LVEWHRTPQTNETDGFQVKRAGDRPVKCRILLLLDNHPAKFKLHPRLAKVLGIATETRPK 247
Query: 350 IIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQPIHLE 409
II A+W Y+K LQ P + I CD L + FG +M+F V K+ Q L P+
Sbjct: 248 IIEALWQYIKTHGLQDPQERDIINCDTFLSQCFGVNRMRFMEVPNKLHQLLQQTDPLEFN 307
Query: 410 HKIKL--SGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIRKIH 467
H I+ G V T CYD+ V++ P+++ + T + + +I D+ I +I+
Sbjct: 308 HIIQRPKEGQEQVST-CYDIDVEMEDPVKQFMHTFVHSPGLANDIQTLDQKCYDIIEQIN 366
Query: 468 EHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAV 527
E + RR F+ F P EFI + + SQ+ DLK + E S E ER ++ + +P E+ V
Sbjct: 367 ELKTRRDFYARFYTEPAEFIKSWVMSQNSDLKTM-NELSGDLEAERFAESYVRPETEEGV 425
Query: 528 IRYLNRK 534
RY+ +K
Sbjct: 426 QRYMFQK 432
>DICTYBASE|DDB_G0273725 [details] [associations]
symbol:snf12-2 "SWI/SNF protein SNF12" species:44689
"Dictyostelium discoideum" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003121 Pfam:PF02201
dictyBase:DDB_G0273725 dictyBase:DDB_G0273203 GO:GO:0005654
GO:GO:0006355 GenomeReviews:CM000151_GR GO:GO:0006351 GO:GO:0016568
EMBL:AAFI02000011 EMBL:AAFI02000009 SUPFAM:SSF47592 eggNOG:COG5531
KO:K11650 RefSeq:XP_644479.1 RefSeq:XP_644771.1
ProteinModelPortal:Q556Z0 PRIDE:Q556Z0 EnsemblProtists:DDB0233489
EnsemblProtists:DDB0266583 GeneID:8618873 GeneID:8619103
KEGG:ddi:DDB_G0273203 KEGG:ddi:DDB_G0273725 OMA:MRFMEIP
ProtClustDB:CLSZ2428982 Uniprot:Q556Z0
Length = 456
Score = 571 (206.1 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
Identities = 126/374 (33%), Positives = 214/374 (57%)
Query: 172 PESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQ-KTLRIYVFNTFANQIKTIP-- 228
PE L++QLLEFE ++DA++ ++ +DIQEA + +TLR+ ++NT++NQ
Sbjct: 75 PECLLFSQLLEFEEKLDASINKRLIDIQEASRRNSIKNIRTLRLSIYNTYSNQSAYYHLD 134
Query: 229 -KKPNA--EPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYP-----KFSSFFKRVTISL 280
K N+ E P+W+L++ G++L++ D ++ S+ KFSSFFK+V I +
Sbjct: 135 NKSLNSVQERPSWSLRVEGKLLDESQDELVNKSIKSSSSSSSTANKRKFSSFFKKVFIQI 194
Query: 281 DQRLYPDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVL 340
R D W+ S++ +GFE+KR G++E + I + +++VP+K+K+ L ++L
Sbjct: 195 GHR---DT--CEWDKSQTFTETDGFEIKRNGNQEVDIKILMYLDHVPQKYKVLGGLSQLL 249
Query: 341 GIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHL 400
I DT+PRII A+WHY+K+ L I TCD L+ +F E+++F + Q + +HL
Sbjct: 250 NIHTDTKPRIILALWHYIKSNTLLDAETKKI-TCDENLKNIFSLEELQFNQIPQLLREHL 308
Query: 401 SPPQPIHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAIC 460
SPP P+ ++ + LSG++ YD+ V+V PI T+ KEI Q ++ I
Sbjct: 309 SPPDPLEFQYTLHLSGDAKDYEQAYDIQVEVDEPIFNPNPTM------RKEISQLNDEIN 362
Query: 461 SAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQ 520
I+K+++H+R+R F S P+ F+N + KD ++ S E+ER + F+ Q
Sbjct: 363 HHIQKVYQHKRKREFMEKLSSDPLGFLNDTTANLVKDFQVSKSTTSTGFEEERHASFYYQ 422
Query: 521 PWVEDAVIRYLNRK 534
P E+ V YL+++
Sbjct: 423 PMTEELVKNYLSKQ 436
Score = 42 (19.8 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 92 SINQFQNAGIGNLGSSSPSNLTP 114
S N N IGN + PS+L P
Sbjct: 39 SNNNSNNTNIGNSINGIPSSLPP 61
>DICTYBASE|DDB_G0273203 [details] [associations]
symbol:snf12-1 "SWI/SNF protein SNF12" species:44689
"Dictyostelium discoideum" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003121 Pfam:PF02201
dictyBase:DDB_G0273725 dictyBase:DDB_G0273203 GO:GO:0005654
GO:GO:0006355 GenomeReviews:CM000151_GR GO:GO:0006351 GO:GO:0016568
EMBL:AAFI02000011 EMBL:AAFI02000009 SUPFAM:SSF47592 eggNOG:COG5531
KO:K11650 RefSeq:XP_644479.1 RefSeq:XP_644771.1
ProteinModelPortal:Q556Z0 PRIDE:Q556Z0 EnsemblProtists:DDB0233489
EnsemblProtists:DDB0266583 GeneID:8618873 GeneID:8619103
KEGG:ddi:DDB_G0273203 KEGG:ddi:DDB_G0273725 OMA:MRFMEIP
ProtClustDB:CLSZ2428982 Uniprot:Q556Z0
Length = 456
Score = 571 (206.1 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
Identities = 126/374 (33%), Positives = 214/374 (57%)
Query: 172 PESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQ-KTLRIYVFNTFANQIKTIP-- 228
PE L++QLLEFE ++DA++ ++ +DIQEA + +TLR+ ++NT++NQ
Sbjct: 75 PECLLFSQLLEFEEKLDASINKRLIDIQEASRRNSIKNIRTLRLSIYNTYSNQSAYYHLD 134
Query: 229 -KKPNA--EPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYP-----KFSSFFKRVTISL 280
K N+ E P+W+L++ G++L++ D ++ S+ KFSSFFK+V I +
Sbjct: 135 NKSLNSVQERPSWSLRVEGKLLDESQDELVNKSIKSSSSSSSTANKRKFSSFFKKVFIQI 194
Query: 281 DQRLYPDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVL 340
R D W+ S++ +GFE+KR G++E + I + +++VP+K+K+ L ++L
Sbjct: 195 GHR---DT--CEWDKSQTFTETDGFEIKRNGNQEVDIKILMYLDHVPQKYKVLGGLSQLL 249
Query: 341 GIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHL 400
I DT+PRII A+WHY+K+ L I TCD L+ +F E+++F + Q + +HL
Sbjct: 250 NIHTDTKPRIILALWHYIKSNTLLDAETKKI-TCDENLKNIFSLEELQFNQIPQLLREHL 308
Query: 401 SPPQPIHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAIC 460
SPP P+ ++ + LSG++ YD+ V+V PI T+ KEI Q ++ I
Sbjct: 309 SPPDPLEFQYTLHLSGDAKDYEQAYDIQVEVDEPIFNPNPTM------RKEISQLNDEIN 362
Query: 461 SAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQ 520
I+K+++H+R+R F S P+ F+N + KD ++ S E+ER + F+ Q
Sbjct: 363 HHIQKVYQHKRKREFMEKLSSDPLGFLNDTTANLVKDFQVSKSTTSTGFEEERHASFYYQ 422
Query: 521 PWVEDAVIRYLNRK 534
P E+ V YL+++
Sbjct: 423 PMTEELVKNYLSKQ 436
Score = 42 (19.8 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 92 SINQFQNAGIGNLGSSSPSNLTP 114
S N N IGN + PS+L P
Sbjct: 39 SNNNSNNTNIGNSINGIPSSLPP 61
>UNIPROTKB|E1BJD1 [details] [associations]
symbol:SMARCD2 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 2"
species:9913 "Bos taurus" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003121 Pfam:PF02201 GO:GO:0006355 GO:GO:0006351
GO:GO:0006338 GO:GO:0016514 GO:GO:0006337 SUPFAM:SSF47592
GeneTree:ENSGT00390000017809 KO:K11650 EMBL:AAFC03085035
IPI:IPI00703184 RefSeq:NP_001192391.1 UniGene:Bt.1380
Ensembl:ENSBTAT00000028049 GeneID:789613 KEGG:bta:789613 CTD:6603
OMA:TQTRASI NextBio:20929791 Uniprot:E1BJD1
Length = 531
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 128/379 (33%), Positives = 210/379 (55%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFA----- 221
+ ++PES Y LL FE ++D + RK+++IQEA+K P ++ LRIY+ NTF+
Sbjct: 149 IRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAE 208
Query: 222 NQIKTIPKKPNAEPP-----TWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRV 276
P P +W L++ G++L+D P + QK KFSSFFK +
Sbjct: 209 GDTAGTTGTPGGTPAGDKVASWELRVEGKLLDD---PSK----QKR-----KFSSFFKSL 256
Query: 277 TISLDQRLY-PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPP 335
I LD+ LY PDNH++ W + +GF+VKR GD + L +++ P ++KL P
Sbjct: 257 VIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPR 316
Query: 336 LMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQK 395
L +LG+ TR I+ A+W Y+K +LQ ++ C+ +++F +++F+ + K
Sbjct: 317 LARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMK 376
Query: 396 ISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQC 455
++ L P PI + H I + N TACYD+ V+V P++ ++S LA+ +EI
Sbjct: 377 LAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASL 436
Query: 456 DEAICSAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRS 515
D I I I++ + +R F L FS P +FI + SQ +DLK++ + + E+ERR+
Sbjct: 437 DVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRA 495
Query: 516 DFFNQPWVEDAVIRYLNRK 534
F++QPW ++AV R++ K
Sbjct: 496 AFYHQPWAQEAVGRHIFAK 514
>UNIPROTKB|F1RSJ9 [details] [associations]
symbol:SMARCD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0006337 "nucleosome
disassembly" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0006338 GO:GO:0016514 GO:GO:0006337 SUPFAM:SSF47592
GeneTree:ENSGT00390000017809 OMA:TQTRASI EMBL:CU466386
Ensembl:ENSSSCT00000018818 Uniprot:F1RSJ9
Length = 531
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 129/379 (34%), Positives = 211/379 (55%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTF------ 220
+ ++PES Y LL FE ++D + RK+++IQEA+K P ++ LRIY+ NTF
Sbjct: 149 IRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAE 208
Query: 221 ---ANQIKTIPKKPNAEP-PTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRV 276
A T P + +W L++ G++L+D P + QK KFSSFFK +
Sbjct: 209 GDSAGSAGTPGGTPAGDKVASWELRVEGKLLDD---PSK----QKR-----KFSSFFKSL 256
Query: 277 TISLDQRLY-PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPP 335
I LD+ LY PDNH++ W + +GF+VKR GD + L +++ P ++KL P
Sbjct: 257 VIELDKELYGPDNHLVEWHRMXTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPR 316
Query: 336 LMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQK 395
L +LG+ TR I+ A+W Y+K +LQ ++ C+ +++F +++F+ + K
Sbjct: 317 LARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMK 376
Query: 396 ISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQC 455
++ L P PI + H I + N TACYD+ V+V P++ ++S LA+ +EI
Sbjct: 377 LAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASL 436
Query: 456 DEAICSAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRS 515
D I I I++ + +R F L FS P +FI + SQ +DLK++ + + E+ERR+
Sbjct: 437 DVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRA 495
Query: 516 DFFNQPWVEDAVIRYLNRK 534
F++QPW ++AV R++ K
Sbjct: 496 AFYHQPWAQEAVGRHIFAK 514
>UNIPROTKB|Q92925 [details] [associations]
symbol:SMARCD2 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 2"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0003713 "transcription
coactivator activity" evidence=NAS] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IDA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0006357
GO:GO:0006351 GO:GO:0006338 GO:GO:0003713 GO:GO:0016514
EMBL:CH471109 GO:GO:0006337 SUPFAM:SSF47592 EMBL:AC015651
eggNOG:COG5531 KO:K11650 HOVERGEN:HBG054046 CTD:6603 OMA:TQTRASI
EMBL:U66618 EMBL:AK300939 EMBL:AK303951 EMBL:BC018953 EMBL:BC142963
EMBL:AF113019 IPI:IPI00514042 IPI:IPI00853043 IPI:IPI00939917
RefSeq:NP_001091896.1 UniGene:Hs.250581 ProteinModelPortal:Q92925
SMR:Q92925 DIP:DIP-31182N IntAct:Q92925 MINT:MINT-1138034
STRING:Q92925 PhosphoSite:Q92925 DMDM:57013095 PaxDb:Q92925
PRIDE:Q92925 Ensembl:ENST00000323347 Ensembl:ENST00000448276
GeneID:6603 KEGG:hsa:6603 UCSC:uc010dea.1 UCSC:uc010wpt.1
GeneCards:GC17M061909 H-InvDB:HIX0014075 HGNC:HGNC:11107 MIM:601736
neXtProt:NX_Q92925 PharmGKB:PA35957 OrthoDB:EOG4WQ12P
ChiTaRS:SMARCD2 GenomeRNAi:6603 NextBio:25689 ArrayExpress:Q92925
Bgee:Q92925 CleanEx:HS_SMARCD2 Genevestigator:Q92925
GermOnline:ENSG00000108604 Uniprot:Q92925
Length = 531
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 128/379 (33%), Positives = 210/379 (55%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFA----- 221
+ ++PES Y LL FE ++D + RK+++IQEA+K P ++ LRIY+ NTF+
Sbjct: 149 IRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAE 208
Query: 222 NQIKTIPKKPNAEPP-----TWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRV 276
P P +W L++ G++L+D P + QK KFSSFFK +
Sbjct: 209 GDSAGTAGTPGGTPAGDKVASWELRVEGKLLDD---PSK----QKR-----KFSSFFKSL 256
Query: 277 TISLDQRLY-PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPP 335
I LD+ LY PDNH++ W + +GF+VKR GD + L +++ P ++KL P
Sbjct: 257 VIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPR 316
Query: 336 LMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQK 395
L +LG+ TR I+ A+W Y+K +LQ ++ C+ +++F +++F+ + K
Sbjct: 317 LARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMK 376
Query: 396 ISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQC 455
++ L P PI + H I + N TACYD+ V+V P++ ++S LA+ +EI
Sbjct: 377 LAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASL 436
Query: 456 DEAICSAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRS 515
D I I I++ + +R F L FS P +FI + SQ +DLK++ + + E+ERR+
Sbjct: 437 DVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRA 495
Query: 516 DFFNQPWVEDAVIRYLNRK 534
F++QPW ++AV R++ K
Sbjct: 496 AFYHQPWAQEAVGRHIFAK 514
>RGD|69289 [details] [associations]
symbol:Smarcd2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 2"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006337 "nucleosome disassembly" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016514 "SWI/SNF complex"
evidence=IEA;ISO] InterPro:IPR003121 Pfam:PF02201 RGD:69289
GO:GO:0006355 GO:GO:0006351 GO:GO:0006338 GO:GO:0016514
GO:GO:0006337 SUPFAM:SSF47592 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
HOVERGEN:HBG054046 CTD:6603 OMA:TQTRASI OrthoDB:EOG4WQ12P
EMBL:AB003504 EMBL:AB003505 EMBL:BC062063 IPI:IPI00198069 PIR:JC6508
RefSeq:NP_114189.1 UniGene:Rn.3053 ProteinModelPortal:O54772
STRING:O54772 PhosphoSite:O54772 Ensembl:ENSRNOT00000014508
GeneID:83833 KEGG:rno:83833 InParanoid:O54772 NextBio:616469
Genevestigator:O54772 GermOnline:ENSRNOG00000010557 Uniprot:O54772
Length = 531
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 128/379 (33%), Positives = 210/379 (55%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFA----- 221
+ ++PES Y LL FE ++D + RK+++IQEA+K P ++ LRIY+ NTF+
Sbjct: 149 IRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAD 208
Query: 222 NQIKTIPKKPNAEPP-----TWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRV 276
P P +W L++ G++L+D P + QK KFSSFFK +
Sbjct: 209 GDNSGTAGTPGGTPAADKVASWELRVEGKLLDD---PSK----QKR-----KFSSFFKSL 256
Query: 277 TISLDQRLY-PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPP 335
I LD+ LY PDNH++ W + +GF+VKR GD + L +++ P ++KL P
Sbjct: 257 VIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPR 316
Query: 336 LMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQK 395
L +LG+ TR I+ A+W Y+K +LQ ++ C+ +++F +++F+ + K
Sbjct: 317 LARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMK 376
Query: 396 ISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQC 455
++ L P PI + H I + N TACYD+ V+V P++ ++S LA+ +EI
Sbjct: 377 LAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASL 436
Query: 456 DEAICSAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRS 515
D I I I++ + +R F L FS P +FI + SQ +DLK++ + + E+ERR+
Sbjct: 437 DVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRA 495
Query: 516 DFFNQPWVEDAVIRYLNRK 534
F++QPW ++AV R++ K
Sbjct: 496 AFYHQPWAQEAVGRHIFAK 514
>UNIPROTKB|F1SHA1 [details] [associations]
symbol:SMARCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=IEA] [GO:0032947 "protein complex
scaffold" evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA] GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0048096 GO:GO:0006337
GeneTree:ENSGT00390000017809 EMBL:CU457393
Ensembl:ENSSSCT00000000230 OMA:XWHRTAT ArrayExpress:F1SHA1
Uniprot:F1SHA1
Length = 513
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 120/370 (32%), Positives = 192/370 (51%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKT 226
+ ++PES Y LL FE ++D + RK++DIQEALK P ++ LRI++ NTF N K+
Sbjct: 137 IRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTF-NPAKS 195
Query: 227 IPKKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY- 285
+ +W L++ GR+LED QK KFSSFFK + I LD+ LY
Sbjct: 196 DAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKR-----KFSSFFKSLVIELDKDLYG 250
Query: 286 PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVD 345
PDNH++ W + + +GF+VKR GD + L ++Y + L L+ LGI
Sbjct: 251 PDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQEPPYFLGTELLRPLGISRQ 310
Query: 346 TRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQP 405
TR R A+W ++ A Q P+ +++ + ++ Q + +L P
Sbjct: 311 TRLRSCVALWTFI-ATATQDPSHNCNVHHSSQQRQILNSLRPGIELMDQ--THNLMVPTL 367
Query: 406 IH-LEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIR 464
L + N TACYD+ V+V ++ ++++ L + +EI D I I
Sbjct: 368 YQALVFLPSVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIE 427
Query: 465 KIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVE 524
I++ + +R F L F++ P FIN ++SQ +DLK + + + E+ERR++F+ QPW +
Sbjct: 428 TINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEERRAEFYFQPWAQ 486
Query: 525 DAVIRYLNRK 534
+AV RY K
Sbjct: 487 EAVCRYFYSK 496
>POMBASE|SPAC23G3.10c [details] [associations]
symbol:ssr3 "SWI/SNF and RSC complex subunit Ssr3"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IC]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0016586 "RSC
complex" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
PomBase:SPAC23G3.10c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006357 GO:GO:0006338 GO:GO:0000790
GO:GO:0016514 GO:GO:0016586 GO:GO:0000991 SUPFAM:SSF47592
eggNOG:COG5531 OrthoDB:EOG4N8VDJ KO:K11650 OMA:PLKSQMS PIR:T50184
RefSeq:NP_593110.1 HSSP:Q61466 ProteinModelPortal:Q9P7S3
DIP:DIP-48385N STRING:Q9P7S3 EnsemblFungi:SPAC23G3.10c.1
GeneID:2541438 KEGG:spo:SPAC23G3.10c NextBio:20802540
Uniprot:Q9P7S3
Length = 425
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 119/376 (31%), Positives = 195/376 (51%)
Query: 171 LPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKTIPKK 230
+PE+ Y L + E ++D+ + RK+ D+Q++L + LR+Y+ +T ANQ K
Sbjct: 41 IPEAEDYIALQDLERKLDSLIVRKRFDLQDSLSRNSHKTRILRMYIHSTVANQ-SWQQKG 99
Query: 231 PNAE---------P-PTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISL 280
N E P P WTL I GR+L V+PD K+ L P F++FF+++ I +
Sbjct: 100 ENQENNSGDINSLPIPEWTLHIEGRLL---VNPDDED--DKAFELAP-FTNFFRKIAIQI 153
Query: 281 --DQRLYPDNHIIVWENSRSPA-PHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLM 337
LYP + + W + G V RKGD+ V I L PE++KLS
Sbjct: 154 LRSDDLYPSGNYVEWNKLPDNSNTSNGITVTRKGDQSVDVKIMLYPEEHPERYKLSKAFA 213
Query: 338 EVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKIS 397
+LGI TRP I++ +W Y+K +LQ + + CD L+ +F +++ F + + ++
Sbjct: 214 NILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEADRLYFPRIPELMN 273
Query: 398 QHLSPPQPIHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDE 457
+ L P PI + + I +S ++ +D+ ++ P ++ + LA +I D+
Sbjct: 274 RFLEPIDPIVIPYTINVSEHTVEKVTIFDIRINTEDPRHSQIRSFLATMMSQDKIRSIDD 333
Query: 458 AICSAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVA-GEGSRSAEKERRSD 516
+ I+ I + + F FS+SP+EFIN IESQS+DL++V G AEK R +D
Sbjct: 334 KLTELIQAITYSQSKYDFMKKFSESPIEFINEWIESQSRDLEIVLDGTNMNYAEK-RSAD 392
Query: 517 FFNQPWVEDAVIRYLN 532
++ QPWV ++ YLN
Sbjct: 393 YYQQPWVHESAFHYLN 408
>ASPGD|ASPL0000017588 [details] [associations]
symbol:AN10524 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0016586 "RSC
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003121 Pfam:PF02201
EMBL:BN001302 SUPFAM:SSF47592 EnsemblFungi:CADANIAT00004436
OMA:TDKNIPD Uniprot:C8V4A6
Length = 472
Score = 354 (129.7 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 94/317 (29%), Positives = 148/317 (46%)
Query: 248 EDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQR--LYP-DNHIIVWENSRSPA---- 300
EDG D + ++S +FS FFK +T+ D+ P + I W + P
Sbjct: 157 EDGSDGKKAATTKRSEQ---RFSHFFKSITVDFDKSPSTSPAEMQTITWTKPQVPPNAVN 213
Query: 301 --PHEGFE---VKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIW 355
P+ F+ R + V I L + PE++KLS L EVL +E +TR I+ IW
Sbjct: 214 LPPNADFDSVQFSRASQENLNVTISLVRDETPERYKLSKELAEVLDVEEETRSGIVLGIW 273
Query: 356 HYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQPIHLEHKIKLS 415
Y++A LQ + + CD L+ +FG ++M F + + I H SP PI L + I++
Sbjct: 274 DYIRAMGLQEDEEKRLVRCDDRLRAIFGRDQMFFPQIPESIGPHTSPLDPIKLPYTIRVD 333
Query: 416 GN---SPVGTACYDVLVDVPFPIQRELSTLLAN---ADKNKEIDQCDEAICSAIRKIHEH 469
P T YD+ V V P++ ++ L N A ++I Q D+ + I+ +
Sbjct: 334 EEFHKDPTPTV-YDIQVAVEDPLRSKMLALTQNPQYAAGMRQIAQLDDQVALIIQALTHS 392
Query: 470 RRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFF-----NQPW-- 522
R + +FF S+ P F+ I SQ +DL+ + GE +R ++ F N W
Sbjct: 393 RAKHSFFTALSKDPATFVRRWINSQRRDLETILGEATRGGGEDASGPEFRRGGSNSVWDT 452
Query: 523 -VEDAVIRYLNRKPAAG 538
V +RY+ KP AG
Sbjct: 453 AVAHEAVRYMLAKPDAG 469
Score = 115 (45.5 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 177 YTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKTIPKK---PNA 233
Y L + E R+DAA+ RK++DIQ+++ +T+RI+V NT NQ + P
Sbjct: 56 YKSLRDLEKRLDAAIVRKRLDIQDSISKTVKKYRTMRIWVSNTVENQPWQTGQNGSVPGT 115
Query: 234 EPPT--WTLKIIGRILEDGVD 252
P + + ++I GR+LED D
Sbjct: 116 TPGSGRYKVRIEGRLLEDVSD 136
>CGD|CAL0006320 [details] [associations]
symbol:orf19.2265 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0061412 "positive regulation of transcription
from RNA polymerase II promoter in response to amino acid
starvation" evidence=IEA] InterPro:IPR003121 CGD:CAL0006320
EMBL:AACQ01000095 EMBL:AACQ01000096 SUPFAM:SSF47592 eggNOG:COG5531
KO:K11775 RefSeq:XP_714793.1 RefSeq:XP_714855.1
ProteinModelPortal:Q59Z35 STRING:Q59Z35 GeneID:3643504
GeneID:3643584 KEGG:cal:CaO19.2265 KEGG:cal:CaO19.9805
Uniprot:Q59Z35
Length = 469
Score = 149 (57.5 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 50/199 (25%), Positives = 87/199 (43%)
Query: 330 FKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKF 389
FK S EV +E T P K +D ++ D L ++ + KF
Sbjct: 261 FKKSNAYTEVPAVETSTLPN--------PADDKDSSDDDLTLVEADDLLFELLKVKTFKF 312
Query: 390 TMVSQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLVDVPFPI---QREL----STL 442
+ + + H P +PI +++++ ++ +G D+ V++P + Q+EL T
Sbjct: 313 SDLYKLTQAHFVPREPIIVDYEVDTRKSTTLGNVVLDIPVELPLNLLKAQKELLDVNKTA 372
Query: 443 LANADK-NKEIDQCDEAICSAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLV 501
N K + I Q D+ I AI + R F+ S PV+FI +ESQ++ LK +
Sbjct: 373 FENLAKADSTISQLDQRISLAIIALQNANSREKFYRELSDDPVKFIENWLESQAETLKAL 432
Query: 502 AGEGSRSAEKERRSDFFNQ 520
+ E RR+ +F +
Sbjct: 433 KSDEGYDEEVVRRAKYFEE 451
Score = 133 (51.9 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 46/169 (27%), Positives = 77/169 (45%)
Query: 212 LRIYVFNTFANQI--------KTIP-KKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKS 262
LRI+++NT NQ K +P P +WTL+I G+ + D PD+ + ++
Sbjct: 93 LRIFIYNTCENQPWQKQLLQQKGLPVPDPTLAESSWTLRIEGKFISD--IPDEQQQIDET 150
Query: 263 NPLYPKFSSFFKRVTISL-DQRLYPD-----NHIIVWEN-----SRSPAP--HEGFEVKR 309
KFSSF +++ L YP+ +HII W + ++ PA +G ++KR
Sbjct: 151 F----KFSSFLSAISVDLLPNENYPNIQESQSHIIEWRDDGPNANKPPASVSFDGLDIKR 206
Query: 310 KGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYV 358
G I L + KLS + +G + ++ ++ IW YV
Sbjct: 207 NGIFNIKSKIALLVKNHSNSLKLSEEMSRFVGKQECSQQELLYIIWQYV 255
Score = 114 (45.2 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 41/140 (29%), Positives = 68/140 (48%)
Query: 177 YTQLLEFEARVDAALTRKKVD---IQEALKNPPCLQKT---LRIYVFNTFANQI------ 224
Y +L E E ++D + RK +D IQ+ +P + + LRI+++NT NQ
Sbjct: 52 YKRLQEAEKKLDLLIARKSLDFQAIQQKSIHPHEYRPSTGVLRIFIYNTCENQPWQKQLL 111
Query: 225 --KTIP-KKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISL- 280
K +P P +WTL+I G+ + D PD+ + ++ KFSSF +++ L
Sbjct: 112 QQKGLPVPDPTLAESSWTLRIEGKFISD--IPDEQQQIDETF----KFSSFLSAISVDLL 165
Query: 281 DQRLYPD-----NHIIVWEN 295
YP+ +HII W +
Sbjct: 166 PNENYPNIQESQSHIIEWRD 185
>UNIPROTKB|Q59Z35 [details] [associations]
symbol:SNF12 "Putative uncharacterized protein SNF12"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003121 CGD:CAL0006320
EMBL:AACQ01000095 EMBL:AACQ01000096 SUPFAM:SSF47592 eggNOG:COG5531
KO:K11775 RefSeq:XP_714793.1 RefSeq:XP_714855.1
ProteinModelPortal:Q59Z35 STRING:Q59Z35 GeneID:3643504
GeneID:3643584 KEGG:cal:CaO19.2265 KEGG:cal:CaO19.9805
Uniprot:Q59Z35
Length = 469
Score = 149 (57.5 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 50/199 (25%), Positives = 87/199 (43%)
Query: 330 FKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKF 389
FK S EV +E T P K +D ++ D L ++ + KF
Sbjct: 261 FKKSNAYTEVPAVETSTLPN--------PADDKDSSDDDLTLVEADDLLFELLKVKTFKF 312
Query: 390 TMVSQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLVDVPFPI---QREL----STL 442
+ + + H P +PI +++++ ++ +G D+ V++P + Q+EL T
Sbjct: 313 SDLYKLTQAHFVPREPIIVDYEVDTRKSTTLGNVVLDIPVELPLNLLKAQKELLDVNKTA 372
Query: 443 LANADK-NKEIDQCDEAICSAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLV 501
N K + I Q D+ I AI + R F+ S PV+FI +ESQ++ LK +
Sbjct: 373 FENLAKADSTISQLDQRISLAIIALQNANSREKFYRELSDDPVKFIENWLESQAETLKAL 432
Query: 502 AGEGSRSAEKERRSDFFNQ 520
+ E RR+ +F +
Sbjct: 433 KSDEGYDEEVVRRAKYFEE 451
Score = 133 (51.9 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 46/169 (27%), Positives = 77/169 (45%)
Query: 212 LRIYVFNTFANQI--------KTIP-KKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKS 262
LRI+++NT NQ K +P P +WTL+I G+ + D PD+ + ++
Sbjct: 93 LRIFIYNTCENQPWQKQLLQQKGLPVPDPTLAESSWTLRIEGKFISD--IPDEQQQIDET 150
Query: 263 NPLYPKFSSFFKRVTISL-DQRLYPD-----NHIIVWEN-----SRSPAP--HEGFEVKR 309
KFSSF +++ L YP+ +HII W + ++ PA +G ++KR
Sbjct: 151 F----KFSSFLSAISVDLLPNENYPNIQESQSHIIEWRDDGPNANKPPASVSFDGLDIKR 206
Query: 310 KGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYV 358
G I L + KLS + +G + ++ ++ IW YV
Sbjct: 207 NGIFNIKSKIALLVKNHSNSLKLSEEMSRFVGKQECSQQELLYIIWQYV 255
Score = 114 (45.2 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 41/140 (29%), Positives = 68/140 (48%)
Query: 177 YTQLLEFEARVDAALTRKKVD---IQEALKNPPCLQKT---LRIYVFNTFANQI------ 224
Y +L E E ++D + RK +D IQ+ +P + + LRI+++NT NQ
Sbjct: 52 YKRLQEAEKKLDLLIARKSLDFQAIQQKSIHPHEYRPSTGVLRIFIYNTCENQPWQKQLL 111
Query: 225 --KTIP-KKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISL- 280
K +P P +WTL+I G+ + D PD+ + ++ KFSSF +++ L
Sbjct: 112 QQKGLPVPDPTLAESSWTLRIEGKFISD--IPDEQQQIDETF----KFSSFLSAISVDLL 165
Query: 281 DQRLYPD-----NHIIVWEN 295
YP+ +HII W +
Sbjct: 166 PNENYPNIQESQSHIIEWRD 185
>SGD|S000005306 [details] [associations]
symbol:SNF12 "73 kDa subunit of the SWI/SNF chromatin
remodeling complex involved i" species:4932 "Saccharomyces
cerevisiae" [GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0061412 "positive regulation of transcription
from RNA polymerase II promoter in response to amino acid
starvation" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IMP]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003121 SGD:S000005306 EMBL:BK006947
GO:GO:0006351 GO:GO:0016514 SUPFAM:SSF47592 GO:GO:0061412
eggNOG:COG5531 GeneTree:ENSGT00390000017809 HOGENOM:HOG000000860
EMBL:X62430 EMBL:Z71638 PIR:S19063 RefSeq:NP_014420.1
ProteinModelPortal:P53628 DIP:DIP-2443N IntAct:P53628
MINT:MINT-650685 STRING:P53628 PaxDb:P53628 PeptideAtlas:P53628
PRIDE:P53628 EnsemblFungi:YNR023W GeneID:855757 KEGG:sce:YNR023W
CYGD:YNR023w KO:K11775 OMA:TMRIEGR OrthoDB:EOG4MPN03 NextBio:980184
Genevestigator:P53628 GermOnline:YNR023W Uniprot:P53628
Length = 566
Score = 162 (62.1 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 52/176 (29%), Positives = 88/176 (50%)
Query: 368 DPSIFTCDPPLQKVFGEEKMKFT-MVSQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYD 426
D + T P K + MK T ++S S HL P QPI +++ +++ S G D
Sbjct: 382 DTQLITLLPSSLKESSPDTMKLTDLLSLINSTHLLPLQPIEIDYTVRVDKASTYGELVLD 441
Query: 427 VLV-DV---PFP-IQRELSTLLANADKN-KEIDQC-------DEAICSAIRKIHEHRRRR 473
+ V DV F QRE A ++N +E++Q D+ I S + +HE +R
Sbjct: 442 IEVPDVNALKFNNTQRESQIGAAELNENARELEQIKPKIALQDKEITSVLSNLHESNKRY 501
Query: 474 AFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIR 529
FF S+ PV+ +N I S S LK+++G+ + + RR++F+ + +A++R
Sbjct: 502 RFFKKISEDPVKALNECIASTSNALKVLSGDEGYNEDMVRRANFYKE---NEAMLR 554
Score = 92 (37.4 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 34/120 (28%), Positives = 55/120 (45%)
Query: 210 KTLRIYVFNTFANQIKTIPKKPNA-----EPPTWTLKIIGRILEDGVDPDQPGMVQKSNP 264
K LRI++ N NQ + A E TWT++I GR+L++ VQ ++P
Sbjct: 123 KFLRIFISNVSENQPWQMDTNNEADLMALENATWTMRIEGRLLDN---------VQANDP 173
Query: 265 LYPKFSSFFKRVTISLDQRLYPDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMN 324
KFSSF + + + + DN V + AP E + DK+ +N+ L+ +
Sbjct: 174 AREKFSSFIESIVVDFKNK-ENDN---VPSTKFNAAPEEN-ATEGPSDKKLNLNLPLQFS 228
Score = 86 (35.3 bits), Expect = 5.9e-13, Sum P(2) = 5.9e-13
Identities = 23/90 (25%), Positives = 41/90 (45%)
Query: 286 PDNHIIVWE-NSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEK--FKLSPPLMEVLGI 342
P + W+ + +P +G ++KR G + I + PE+ SP L ++G+
Sbjct: 261 PKLESVKWQYDPNNPVDFDGLDIKRVGSENVECTISILRKSSPEEPFMSYSPQLTAIIGL 320
Query: 343 EVDTRPRIIAAIWHYVKARKLQHPNDPSIF 372
+ T I +I+ Y+ +L ND S F
Sbjct: 321 KSGTSHDAIFSIYKYIHLNELL-TNDESAF 349
>SGD|S000000648 [details] [associations]
symbol:RSC6 "Component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0016586 "RSC
complex" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000086 "G2/M
transition of mitotic cell cycle" evidence=IMP] [GO:0006337
"nucleosome disassembly" evidence=IDA] [GO:0000080 "G1 phase of
mitotic cell cycle" evidence=IGI] [GO:0016584 "nucleosome
positioning" evidence=IDA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IDA] InterPro:IPR003121 SGD:S000000648 GO:GO:0000086
EMBL:X59720 EMBL:BK006937 GO:GO:0006351 GO:GO:0006337 GO:GO:0016586
GO:GO:0043044 GO:GO:0016584 GO:GO:0000080 GO:GO:0032968
SUPFAM:SSF47592 EMBL:AY692985 PIR:S19466 RefSeq:NP_009981.1
ProteinModelPortal:P25632 DIP:DIP-4999N IntAct:P25632
MINT:MINT-493435 STRING:P25632 PaxDb:P25632 PeptideAtlas:P25632
EnsemblFungi:YCR052W GeneID:850419 KEGG:sce:YCR052W CYGD:YCR052w
eggNOG:COG5531 GeneTree:ENSGT00390000017809 HOGENOM:HOG000000860
KO:K11760 OMA:LHESANG OrthoDB:EOG4N8VDJ NextBio:965983
Genevestigator:P25632 GermOnline:YCR052W Uniprot:P25632
Length = 483
Score = 108 (43.1 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 179 QLLEFEARVDAALTRKKVDIQEAL------KNPPCLQKTLRIYVFNTFANQIKTIPKKP- 231
+L+E ++R+D LTR+++D L K+ P ++ LRIYV+NT + ++ P
Sbjct: 35 KLIEMDSRLDLYLTRRRLDTSINLPTNTKTKDHPPNKEMLRIYVYNTTESSPRSDSGTPA 94
Query: 232 NAEPPTWTLKIIGRILEDGVDPDQP 256
++ TWTL+I G++L + + P
Sbjct: 95 DSGKTTWTLRIEGKLLHESANGKHP 119
Score = 86 (35.3 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 37/151 (24%), Positives = 66/151 (43%)
Query: 375 DPPLQKVFGEEKMKFTMVS--QKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLVDVP 432
D LQKV +++ Q +++ +SP PI L++ I LS ++ G DV DV
Sbjct: 316 DSLLQKVLDTNAAHLPLMNVVQTVNKLVSPLPPIILDYTIDLSKDTTYGATTLDV--DVS 373
Query: 433 FPIQRELSTLLANADKNKEIDQCDEAICSAIRKI----HEHRRRRAFFLGFSQSPVEFIN 488
+ + N K +E D D A I K+ + ++ FF S P E +
Sbjct: 374 HILHQPQPQ--PNLQKEEETDAEDTAKLREITKLALQLNSSAQKYQFFHELSLHPRETLT 431
Query: 489 TLIESQSKDLKLVAGEGSRSAEKERRSDFFN 519
+ S ++ ++ G+ + + R SD ++
Sbjct: 432 HYLWSSKQNELVLQGDQYFNEDAARTSDIYS 462
Score = 62 (26.9 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 303 EGFEVKRKGDKEFTVNIRLEMNYVPE-KFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKAR 361
+G ++KR+G +I +++ V K + SP L ++G++ + + +I+ Y+
Sbjct: 204 DGIDIKRQGKDNLRCSITIQLRGVDGGKVQYSPNLATLIGMQTGSVNDAVYSIYKYILIN 263
Query: 362 KL 363
L
Sbjct: 264 NL 265
>SGD|S000004846 [details] [associations]
symbol:TRI1 "Non-essential sumoylated protein of unknown
function" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005730 "nucleolus" evidence=IEA;IDA]
InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201 SGD:S000004846
GO:GO:0005737 GO:GO:0005730 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 EMBL:BK006946 EMBL:Z49939
SUPFAM:SSF47592 InterPro:IPR014876 Pfam:PF08766 eggNOG:COG5531
InterPro:IPR019835 SMART:SM00151 EMBL:AY557975 PIR:S57600
RefSeq:NP_013960.1 ProteinModelPortal:Q05024 SMR:Q05024
DIP:DIP-1551N IntAct:Q05024 MINT:MINT-386791 STRING:Q05024
PaxDb:Q05024 PeptideAtlas:Q05024 EnsemblFungi:YMR233W GeneID:855273
KEGG:sce:YMR233W CYGD:YMR233w GeneTree:ENSGT00390000006048
HOGENOM:HOG000000765 KO:K15223 OMA:DRREILC OrthoDB:EOG486CP2
NextBio:978891 Genevestigator:Q05024 GermOnline:YMR233W
Uniprot:Q05024
Length = 226
Score = 142 (55.0 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 35/111 (31%), Positives = 58/111 (52%)
Query: 308 KRKGDKEFTVNIRLEMNYVPE-------KFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKA 360
KRKG E + + N P+ K LS PL + LG E R +++ IW Y+K
Sbjct: 95 KRKGKSESKSKRKKKKNDSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKE 154
Query: 361 RKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQPIHLEHK 411
LQ+P D CD ++ +FG++ F+M ++ +++HL P I ++H+
Sbjct: 155 HDLQNPKDRREILCDEKMEPIFGKKMTMFSM-NKLLTKHLFNPDEI-VKHE 203
>POMBASE|SPCC285.17 [details] [associations]
symbol:spp27 "RNA polymerase I upstream activation factor
complex subunit Spp27" species:4896 "Schizosaccharomyces pombe"
[GO:0000500 "RNA polymerase I upstream activating factor complex"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0045943 "positive
regulation of transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0001168 "RNA polymerase I upstream control
element sequence-specific DNA binding transcription factor
activity" evidence=TAS] InterPro:IPR003121 InterPro:IPR009057
Pfam:PF02201 PomBase:SPCC285.17 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF47592 GO:GO:0045943 InterPro:IPR014876
Pfam:PF08766 GO:GO:0000500 eggNOG:COG5531 InterPro:IPR019835
SMART:SM00151 HSSP:Q61466 KO:K15223 OMA:DRREILC OrthoDB:EOG486CP2
PIR:T41263 RefSeq:NP_588345.1 ProteinModelPortal:O74503
STRING:O74503 PRIDE:O74503 EnsemblFungi:SPCC285.17.1 GeneID:2539310
KEGG:spo:SPCC285.17 NextBio:20800476 Uniprot:O74503
Length = 233
Score = 141 (54.7 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 35/90 (38%), Positives = 47/90 (52%)
Query: 324 NYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFG 383
N + + KLSP L E LG+E +RP+ + +W Y+KA LQ PND CD L+ VF
Sbjct: 115 NPLNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFE 174
Query: 384 EEKMK-FTM------VSQKI-SQHLSPPQP 405
+ + FTM + KI L PQP
Sbjct: 175 VDTLHMFTMNKYLTNLMTKIPDDQLPKPQP 204
>TAIR|locus:2096404 [details] [associations]
symbol:AT3G03590 "AT3G03590" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0006661 "phosphatidylinositol biosynthetic
process" evidence=RCA] InterPro:IPR003121 Pfam:PF02201
EMBL:CP002686 EMBL:AC009327 SUPFAM:SSF47592 InterPro:IPR019835
SMART:SM00151 EMBL:BT003701 EMBL:AK117771 IPI:IPI00546282
RefSeq:NP_566210.1 UniGene:At.40956 ProteinModelPortal:Q9SS61
SMR:Q9SS61 PRIDE:Q9SS61 EnsemblPlants:AT3G03590.1 GeneID:821215
KEGG:ath:AT3G03590 TAIR:At3g03590 InParanoid:Q9SS61 OMA:REIFCDE
PhylomeDB:Q9SS61 ProtClustDB:CLSN2917083 Genevestigator:Q9SS61
Uniprot:Q9SS61
Length = 143
Score = 116 (45.9 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 332 LSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVF-GEEKMKFT 390
+SP L + LG +R I IW Y+K+ LQ+P D CD L+ +F G++K+ F
Sbjct: 70 VSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDKVGFL 129
Query: 391 MVSQKISQH 399
+S+ +S H
Sbjct: 130 EISKLLSPH 138
>UNIPROTKB|G4MMD0 [details] [associations]
symbol:MGG_01988 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201 GO:GO:0003677
Gene3D:1.10.10.60 EMBL:CM001231 SUPFAM:SSF47592 InterPro:IPR014876
Pfam:PF08766 InterPro:IPR019835 SMART:SM00151 KO:K15223
RefSeq:XP_003708728.1 ProteinModelPortal:G4MMD0
EnsemblFungi:MGG_01988T0 GeneID:2681107 KEGG:mgr:MGG_01988
Uniprot:G4MMD0
Length = 285
Score = 132 (51.5 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 330 FKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKF 389
F LS L EV G +RP+++ +W ++K LQ PND CD +Q VF + +
Sbjct: 209 FHLSASLAEVCGEPTLSRPQVVKKLWEHIKGNNLQDPNDKRQILCDEKMQAVFKQSSLNM 268
Query: 390 TMVSQKISQHLSP 402
+++ I HL P
Sbjct: 269 FAMNKLIGSHLYP 281
>TAIR|locus:505006294 [details] [associations]
symbol:AT2G35605 "AT2G35605" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002685
GenomeReviews:CT485783_GR EMBL:AC006068 EMBL:AC005314
SUPFAM:SSF47592 eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151
HOGENOM:HOG000225318 EMBL:AF370234 EMBL:AY059124 EMBL:AY088833
EMBL:AK118403 IPI:IPI00544861 RefSeq:NP_565810.1 UniGene:At.19064
ProteinModelPortal:Q93W30 SMR:Q93W30 STRING:Q93W30 PaxDb:Q93W30
PRIDE:Q93W30 EnsemblPlants:AT2G35605.1 GeneID:818127
KEGG:ath:AT2G35605 TAIR:At2g35605 InParanoid:Q93W30 OMA:AVKKIWE
PhylomeDB:Q93W30 ProtClustDB:CLSN2688164 ArrayExpress:Q93W30
Genevestigator:Q93W30 Uniprot:Q93W30
Length = 109
Score = 107 (42.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 332 LSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVF-GEEKMKFT 390
+S PL +G +R + IW Y+K LQ+P + CD L+ +F G++ + F
Sbjct: 36 VSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFSGKDTVGFL 95
Query: 391 MVSQKISQH 399
+S+ +SQH
Sbjct: 96 EISKLLSQH 104
>TAIR|locus:2116189 [details] [associations]
symbol:AT4G34290 "AT4G34290" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002687
EMBL:AL035521 EMBL:AL161585 SUPFAM:SSF47592 InterPro:IPR019835
SMART:SM00151 ProtClustDB:CLSN2685737 EMBL:BT001198 IPI:IPI00535550
PIR:T04775 RefSeq:NP_195155.1 UniGene:At.2612
ProteinModelPortal:Q9SYZ4 SMR:Q9SYZ4 STRING:Q9SYZ4 PRIDE:Q9SYZ4
EnsemblPlants:AT4G34290.1 GeneID:829579 KEGG:ath:AT4G34290
TAIR:At4g34290 InParanoid:Q9SYZ4 OMA:REPRGIM PhylomeDB:Q9SYZ4
Genevestigator:Q9SYZ4 Uniprot:Q9SYZ4
Length = 144
Score = 107 (42.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 21/69 (30%), Positives = 38/69 (55%)
Query: 332 LSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVF-GEEKMKFT 390
+S + +V+G+ R + + IW Y+K LQ P + CD L+K+F G+E++ F
Sbjct: 74 VSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFL 133
Query: 391 MVSQKISQH 399
+++ I H
Sbjct: 134 EIAKLIGPH 142
>SGD|S000005821 [details] [associations]
symbol:UAF30 "Subunit of UAF (upstream activation factor)"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0001168
"RNA polymerase I upstream control element sequence-specific DNA
binding transcription factor activity" evidence=IMP] [GO:0001165
"RNA polymerase I upstream control element sequence-specific DNA
binding" evidence=IDA] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0000500 "RNA
polymerase I upstream activating factor complex" evidence=IDA]
InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201 SGD:S000005821
EMBL:BK006948 GO:GO:0006355 Gene3D:1.10.10.60 GO:GO:0006325
SUPFAM:SSF47592 InterPro:IPR014876 Pfam:PF08766 GO:GO:0042790
GO:GO:0000500 GO:GO:0001165 eggNOG:COG5531 InterPro:IPR019835
SMART:SM00151 RefSeq:NP_014940.4 GeneID:854472 KEGG:sce:YOR297C
GeneTree:ENSGT00390000006048 HOGENOM:HOG000000765 KO:K15223
OrthoDB:EOG486CP2 EMBL:Z75203 PIR:S67199 RefSeq:NP_014938.3
ProteinModelPortal:Q08747 SMR:Q08747 IntAct:Q08747 STRING:Q08747
EnsemblFungi:YOR295W GeneID:854470 KEGG:sce:YOR295W CYGD:YOR295w
OMA:EDNENDT NextBio:976765 Genevestigator:Q08747 GermOnline:YOR295W
Uniprot:Q08747
Length = 228
Score = 121 (47.7 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 329 KFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMK 388
K LS L +LG TR ++ +W Y+KA LQ+PN+ CD L+ + G+
Sbjct: 123 KVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILGKSTNM 182
Query: 389 FTMVSQKISQHLSPPQPI 406
F M + ++ H++ P+ I
Sbjct: 183 FEM-HKILASHMTEPKKI 199
>UNIPROTKB|F8VW95 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9606 "Homo sapiens" [GO:0071564 "npBAF complex"
evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
GO:GO:0071564 GO:GO:0071565 EMBL:AC025154 HGNC:HGNC:11106
ChiTaRS:SMARCD1 IPI:IPI01022482 Ensembl:ENST00000551497
ArrayExpress:F8VW95 Bgee:F8VW95 Uniprot:F8VW95
Length = 113
Score = 103 (41.3 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 167 VAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNP 205
+ ++PES Y LL FE ++D + RK++DIQEALK P
Sbjct: 75 IRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRP 113
>TAIR|locus:2060469 [details] [associations]
symbol:AT2G14880 "AT2G14880" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:AC005396
EMBL:CP002685 GenomeReviews:CT485783_GR SUPFAM:SSF47592
eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151 EMBL:AF370580
IPI:IPI00517159 PIR:E84522 RefSeq:NP_565366.1 UniGene:At.13059
ProteinModelPortal:O82326 SMR:O82326 STRING:O82326 PaxDb:O82326
PRIDE:O82326 EnsemblPlants:AT2G14880.1 GeneID:815977
KEGG:ath:AT2G14880 TAIR:At2g14880 HOGENOM:HOG000225318
InParanoid:O82326 OMA:QDIVELP PhylomeDB:O82326
ProtClustDB:CLSN2685737 Genevestigator:O82326 Uniprot:O82326
Length = 141
Score = 102 (41.0 bits), Expect = 0.00023, P = 0.00023
Identities = 19/69 (27%), Positives = 37/69 (53%)
Query: 332 LSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVF-GEEKMKFT 390
+SP + +++ + R + + IW Y+K LQ P + CD L+K+F G +++ F
Sbjct: 71 VSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFL 130
Query: 391 MVSQKISQH 399
+++ I H
Sbjct: 131 EIAKLIGPH 139
>ASPGD|ASPL0000053508 [details] [associations]
symbol:AN0360 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR003121
InterPro:IPR009057 Pfam:PF02201 EMBL:BN001308 GO:GO:0003677
Gene3D:1.10.10.60 EMBL:AACD01000006 SUPFAM:SSF47592
InterPro:IPR014876 Pfam:PF08766 eggNOG:COG5531 InterPro:IPR019835
SMART:SM00151 KO:K15223 OrthoDB:EOG486CP2 RefSeq:XP_657964.1
ProteinModelPortal:Q5BGH0 EnsemblFungi:CADANIAT00002344
GeneID:2876138 KEGG:ani:AN0360.2 HOGENOM:HOG000213060 OMA:FRTFGML
Uniprot:Q5BGH0
Length = 279
Score = 115 (45.5 bits), Expect = 0.00056, P = 0.00056
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 332 LSPPLMEVLGIEVD-TRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFT 390
LSP L +LG +RP+ + +W Y+ LQ P+D CD P++ VF ++++
Sbjct: 205 LSPALSALLGGAATLSRPQTVKKLWEYIHEHDLQDPSDRRQIRCDDPMRAVFKQDRIHMF 264
Query: 391 MVSQKISQHLSPP 403
+++ +SQ+L P
Sbjct: 265 TMTKILSQNLYSP 277
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.390 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 545 470 0.00098 118 3 11 22 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 43
No. of states in DFA: 613 (65 KB)
Total size of DFA: 272 KB (2144 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 40.26u 0.08s 40.34t Elapsed: 00:00:04
Total cpu time: 40.28u 0.08s 40.36t Elapsed: 00:00:04
Start: Mon May 20 20:30:13 2013 End: Mon May 20 20:30:17 2013