BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009056
         (545 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1V31|A Chain A, Solution Structure Of The SwibMDM2 DOMAIN OF THE
           Hypothetical Protein At5g14170 From Arabidopsis Thaliana
          Length = 93

 Score =  139 bits (349), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 64/75 (85%), Positives = 68/75 (90%)

Query: 326 VPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEE 385
           VPEKFKLS  LM+VLGIEV+TRPRIIAAIWHYVKARKLQ+PNDPS F CD  LQKVFGEE
Sbjct: 8   VPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEE 67

Query: 386 KMKFTMVSQKISQHL 400
           K+KFTMVSQKIS HL
Sbjct: 68  KLKFTMVSQKISHHL 82


>pdb|1UHR|A Chain A, Solution Structure Of The Swib Domain Of Mouse Brg1-
           Associated Factor 60a
          Length = 93

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 50/79 (63%)

Query: 327 PEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEK 386
           P +FKL P L  +LGI   TRP II A+W Y+K  KLQ P++     CD  LQ++F  ++
Sbjct: 9   PPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQR 68

Query: 387 MKFTMVSQKISQHLSPPQP 405
           MKF+ + Q++   L PP+P
Sbjct: 69  MKFSEIPQRLHALLMPPEP 87


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,080,292
Number of Sequences: 62578
Number of extensions: 536534
Number of successful extensions: 1046
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1044
Number of HSP's gapped (non-prelim): 3
length of query: 545
length of database: 14,973,337
effective HSP length: 104
effective length of query: 441
effective length of database: 8,465,225
effective search space: 3733164225
effective search space used: 3733164225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)