BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009056
(545 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana
GN=At5g14170 PE=1 SV=1
Length = 534
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/546 (75%), Positives = 457/546 (83%), Gaps = 15/546 (2%)
Query: 1 MSANNNNPAKSLGQTSSPFANAGMGSPSMPMNPGFPQSQAQAQMGAGFPSQFQLSQAQAL 60
MS NNNNP K G PF N GM S S+P N GF AQ+ M A QA
Sbjct: 1 MSGNNNNPQKPQGSAPLPFGNPGMASASVPGNQGF----AQSHMAA---------NFQAQ 47
Query: 61 AQAHQSKMHAQVAQAQAAHAQLQAHLQAQGLSINQFQNA-GIGNLGSSSPSNLTPGNASL 119
Q Q++ A AQLQA LQAQG+++NQ Q + GIG LG SSPS TPG+ ++
Sbjct: 48 FQFSQAQALAHAQAQSKVQAQLQAQLQAQGMTMNQAQGSPGIGGLGPSSPSLTTPGSLNM 107
Query: 120 KRMPQKPPVRPPVVPMSN-MVSPLKAMELTSAARRKKQKLPEKQLQERVAAILPESALYT 178
KR QKPP+RPP P SN +SP++ MELT AAR+KKQKLPEK LQERVAAILPESALYT
Sbjct: 108 KRFQQKPPMRPPGAPASNNTISPMRTMELTPAARKKKQKLPEKSLQERVAAILPESALYT 167
Query: 179 QLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKTIPKKPNAEPPTW 238
QLLEFE+RVDAALTRKKVDIQEALKNPPC+QKTLRIYVFN+FANQ TIP PNA+PPTW
Sbjct: 168 QLLEFESRVDAALTRKKVDIQEALKNPPCIQKTLRIYVFNSFANQNNTIPGNPNADPPTW 227
Query: 239 TLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLYPDNHIIVWENSRS 298
TLKIIGRILEDGVDPDQPG VQK+NPL+PKFSSFFKRVT+SLDQRLYP+N +I+WEN+RS
Sbjct: 228 TLKIIGRILEDGVDPDQPGFVQKANPLHPKFSSFFKRVTVSLDQRLYPENPLIIWENARS 287
Query: 299 PAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYV 358
PAP EGFE+KRKG++EF +IRLEMNYVPEKFKLS LM+VLGIEV+TRPRIIAAIWHYV
Sbjct: 288 PAPQEGFEIKRKGNQEFAASIRLEMNYVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYV 347
Query: 359 KARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQPIHLEHKIKLSGNS 418
KARKLQ+PNDPS F CD LQKVFGEEK+KFTMVSQKIS HLSPP PIHLEHKIKLSGN+
Sbjct: 348 KARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSPPPPIHLEHKIKLSGNN 407
Query: 419 PVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIRKIHEHRRRRAFFLG 478
P +ACYDVLVDVPFPIQR+L+ LLANA+KNKEI+ CDEAIC+AIRKIHEHRRRRAFFLG
Sbjct: 408 PAVSACYDVLVDVPFPIQRDLNNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLG 467
Query: 479 FSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLNRKPAAG 538
FSQSPVEFIN LIESQSKDLK+VAGE SR+AE+ERRSDFFNQPWVEDAVIRYLNR+PAAG
Sbjct: 468 FSQSPVEFINALIESQSKDLKVVAGEASRNAERERRSDFFNQPWVEDAVIRYLNRRPAAG 527
Query: 539 SDAPGS 544
+D PGS
Sbjct: 528 NDGPGS 533
>sp|Q61466|SMRD1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Mus musculus
GN=Smarcd1 PE=1 SV=3
Length = 515
Score = 282 bits (721), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 147/382 (38%), Positives = 225/382 (58%), Gaps = 8/382 (2%)
Query: 154 KKQKLPEKQLQERVAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLR 213
KK+K+ +K L +R+ ++PES Y LL FE ++D + RK++DIQEALK P ++ LR
Sbjct: 124 KKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLR 183
Query: 214 IYVFNTFANQIKTIPKKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFF 273
I++ NTF N K+ + +W L++ GR+LED QK KFSSFF
Sbjct: 184 IFISNTF-NPAKSDAEDGEGTVASWELRVEGRLLEDAALSKYDATKQKR-----KFSSFF 237
Query: 274 KRVTISLDQRLY-PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKL 332
K + I LD+ LY PDNH++ W + + +GF+VKR GD + L ++Y P +FKL
Sbjct: 238 KSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKL 297
Query: 333 SPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMV 392
P L +LGI TRP II A+W Y+K KLQ P++ CD LQ++F ++MKF+ +
Sbjct: 298 DPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEI 357
Query: 393 SQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEI 452
Q++ L PP+PI + H I + N TACYD+ V+V ++ ++++ L + +EI
Sbjct: 358 PQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEI 417
Query: 453 DQCDEAICSAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKE 512
D I I I++ + +R F L F++ P FIN ++SQ +DLK + + + E+E
Sbjct: 418 ATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEE 476
Query: 513 RRSDFFNQPWVEDAVIRYLNRK 534
RR++F+ QPW ++AV RY K
Sbjct: 477 RRAEFYFQPWAQEAVCRYFYSK 498
>sp|Q96GM5|SMRD1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Homo sapiens
GN=SMARCD1 PE=1 SV=2
Length = 515
Score = 282 bits (721), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 147/382 (38%), Positives = 225/382 (58%), Gaps = 8/382 (2%)
Query: 154 KKQKLPEKQLQERVAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLR 213
KK+K+ +K L +R+ ++PES Y LL FE ++D + RK++DIQEALK P ++ LR
Sbjct: 124 KKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLR 183
Query: 214 IYVFNTFANQIKTIPKKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFF 273
I++ NTF N K+ + +W L++ GR+LED QK KFSSFF
Sbjct: 184 IFISNTF-NPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKR-----KFSSFF 237
Query: 274 KRVTISLDQRLY-PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKL 332
K + I LD+ LY PDNH++ W + + +GF+VKR GD + L ++Y P +FKL
Sbjct: 238 KSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKL 297
Query: 333 SPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMV 392
P L +LGI TRP II A+W Y+K KLQ P++ CD LQ++F ++MKF+ +
Sbjct: 298 DPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEI 357
Query: 393 SQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEI 452
Q++ L PP+PI + H I + N TACYD+ V+V ++ ++++ L + +EI
Sbjct: 358 PQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEI 417
Query: 453 DQCDEAICSAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKE 512
D I I I++ + +R F L F++ P FIN ++SQ +DLK + + + E+E
Sbjct: 418 ATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEE 476
Query: 513 RRSDFFNQPWVEDAVIRYLNRK 534
RR++F+ QPW ++AV RY K
Sbjct: 477 RRAEFYFQPWAQEAVCRYFYSK 498
>sp|Q2TBN1|SMRD1_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1
PE=2 SV=1
Length = 515
Score = 280 bits (717), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 147/382 (38%), Positives = 224/382 (58%), Gaps = 8/382 (2%)
Query: 154 KKQKLPEKQLQERVAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLR 213
KK+K+ +K L +R+ ++PES Y LL FE ++D + RK++DIQEALK P ++ LR
Sbjct: 124 KKKKMADKILPQRIRELVPESQDYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLR 183
Query: 214 IYVFNTFANQIKTIPKKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFF 273
I++ NTF N K+ + +W L++ GR+LED QK KFSSFF
Sbjct: 184 IFISNTF-NPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKR-----KFSSFF 237
Query: 274 KRVTISLDQRLY-PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKL 332
K + I LD+ LY PDNH++ W + + +GF+VKR GD + L ++Y P +FKL
Sbjct: 238 KSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKL 297
Query: 333 SPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMV 392
P L +LGI TRP II A+W Y+K KLQ P++ CD LQ++F ++MKF+ +
Sbjct: 298 DPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEI 357
Query: 393 SQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEI 452
Q++ L PP+PI + H I + N TACYD+ +V ++ ++++ L + +EI
Sbjct: 358 PQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDEEVDDTLKTQMNSFLLSTASQQEI 417
Query: 453 DQCDEAICSAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKE 512
D I I I++ + +R F L F++ P FIN ++SQ +DLK++ S E+E
Sbjct: 418 ATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKVMTDVVGNS-EEE 476
Query: 513 RRSDFFNQPWVEDAVIRYLNRK 534
RR++F+ QPW ++AV RY K
Sbjct: 477 RRAEFYFQPWAQEAVCRYFYSK 498
>sp|Q6P9Z1|SMRD3_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 3 OS=Mus musculus
GN=Smarcd3 PE=1 SV=2
Length = 483
Score = 263 bits (671), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 141/384 (36%), Positives = 225/384 (58%), Gaps = 25/384 (6%)
Query: 154 KKQKLPEKQLQERVAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLR 213
K++K+ +K L +R+ ++PES Y LL FE ++D + RK+VDIQEALK P ++ LR
Sbjct: 99 KRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLR 158
Query: 214 IYVFNTFANQIKTIPKKPNAEP-----PTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPK 268
+Y+ NTF P KP+AE +W L++ G++L+D P ++ K
Sbjct: 159 LYISNTFN------PAKPDAEDSDGSIASWELRVEGKLLDD------PSKQKR------K 200
Query: 269 FSSFFKRVTISLDQRLY-PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVP 327
FSSFFK + I LD+ LY PDNH++ W + + +GF+VKR GD + L ++Y P
Sbjct: 201 FSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQP 260
Query: 328 EKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKM 387
+FKL P L +LG+ +R I+ A+W YVK +LQ +D D Q++F ++
Sbjct: 261 PQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRL 320
Query: 388 KFTMVSQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANAD 447
KF+ + Q+++ L PP PI + H I + + TACYD+ V+V P++ ++S+ L +
Sbjct: 321 KFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTA 380
Query: 448 KNKEIDQCDEAICSAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSR 507
+EI D I I I++ + +R F L FS+ P ++ L+ SQS+DLK V + +
Sbjct: 381 NQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLK-VMTDVAG 439
Query: 508 SAEKERRSDFFNQPWVEDAVIRYL 531
+ E+ERR++F++QPW ++AV RY
Sbjct: 440 NPEEERRAEFYHQPWSQEAVSRYF 463
>sp|Q6STE5|SMRD3_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 3 OS=Homo sapiens
GN=SMARCD3 PE=1 SV=1
Length = 483
Score = 263 bits (671), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 141/384 (36%), Positives = 225/384 (58%), Gaps = 25/384 (6%)
Query: 154 KKQKLPEKQLQERVAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLR 213
K++K+ +K L +R+ ++PES Y LL FE ++D + RK+VDIQEALK P ++ LR
Sbjct: 99 KRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLR 158
Query: 214 IYVFNTFANQIKTIPKKPNAEP-----PTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPK 268
+Y+ NTF P KP+AE +W L++ G++L+D P ++ K
Sbjct: 159 LYISNTFN------PAKPDAEDSDGSIASWELRVEGKLLDD------PSKQKR------K 200
Query: 269 FSSFFKRVTISLDQRLY-PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVP 327
FSSFFK + I LD+ LY PDNH++ W + + +GF+VKR GD + L ++Y P
Sbjct: 201 FSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQP 260
Query: 328 EKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKM 387
+FKL P L +LG+ +R I+ A+W YVK +LQ +D D Q++F ++
Sbjct: 261 PQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRL 320
Query: 388 KFTMVSQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANAD 447
KF+ + Q+++ L PP PI + H I + + TACYD+ V+V P++ ++S+ L +
Sbjct: 321 KFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTA 380
Query: 448 KNKEIDQCDEAICSAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSR 507
+EI D I I I++ + +R F L FS+ P ++ L+ SQS+DLK V + +
Sbjct: 381 NQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLK-VMTDVAG 439
Query: 508 SAEKERRSDFFNQPWVEDAVIRYL 531
+ E+ERR++F++QPW ++AV RY
Sbjct: 440 NPEEERRAEFYHQPWSQEAVSRYF 463
>sp|Q99JR8|SMRD2_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Mus musculus
GN=Smarcd2 PE=2 SV=2
Length = 531
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 142/425 (33%), Positives = 234/425 (55%), Gaps = 35/425 (8%)
Query: 127 PVRPPVVPMSNMVSPLKAMELTSAA-------RR--KKQKLPEKQLQERVAAILPESALY 177
P+RP + P M+ P + L A RR K++K+ +K L +R+ ++PES Y
Sbjct: 102 PLRPGMPP--TMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAY 159
Query: 178 TQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTF---------ANQIKTIP 228
LL FE ++D + RK+++IQEA+K P ++ LRIY+ NTF A T
Sbjct: 160 MDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKADGDNAGTAGTPG 219
Query: 229 KKPNAEP-PTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY-P 286
P A+ +W L++ G++L+D P ++ KFSSFFK + I LD+ LY P
Sbjct: 220 GTPAADKVASWELRVEGKLLDD------PSKQKR------KFSSFFKSLVIELDKELYGP 267
Query: 287 DNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDT 346
DNH++ W + +GF+VKR GD + L +++ P ++KL P L +LG+ T
Sbjct: 268 DNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQT 327
Query: 347 RPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQPI 406
R I+ A+W Y+K +LQ ++ C+ +++F +++F+ + K++ L P PI
Sbjct: 328 RAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPI 387
Query: 407 HLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIRKI 466
+ H I + N TACYD+ V+V P++ ++S LA+ +EI D I I I
Sbjct: 388 VINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESI 447
Query: 467 HEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDA 526
++ + +R F L FS P +FI + SQ +DLK++ + + E+ERR+ F++QPW ++A
Sbjct: 448 NQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEA 506
Query: 527 VIRYL 531
V R++
Sbjct: 507 VGRHI 511
>sp|Q92925|SMRD2_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Homo sapiens
GN=SMARCD2 PE=1 SV=3
Length = 531
Score = 244 bits (622), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 140/425 (32%), Positives = 232/425 (54%), Gaps = 35/425 (8%)
Query: 127 PVRPPVVPMSNMVSPLKAMELTSAA-------RR--KKQKLPEKQLQERVAAILPESALY 177
P+RP + P M+ P + L A RR K++K+ +K L +R+ ++PES Y
Sbjct: 102 PLRPGMPP--TMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAY 159
Query: 178 TQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFA-----NQIKTIPKKPN 232
LL FE ++D + RK+++IQEA+K P ++ LRIY+ NTF+ P
Sbjct: 160 MDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPG 219
Query: 233 AEPP-----TWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY-P 286
P +W L++ G++L+D P ++ KFSSFFK + I LD+ LY P
Sbjct: 220 GTPAGDKVASWELRVEGKLLDD------PSKQKR------KFSSFFKSLVIELDKELYGP 267
Query: 287 DNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDT 346
DNH++ W + +GF+VKR GD + L +++ P ++KL P L +LG+ T
Sbjct: 268 DNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQT 327
Query: 347 RPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQPI 406
R I+ A+W Y+K +LQ ++ C+ +++F +++F+ + K++ L P PI
Sbjct: 328 RAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPI 387
Query: 407 HLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIRKI 466
+ H I + N TACYD+ V+V P++ ++S LA+ +EI D I I I
Sbjct: 388 VINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESI 447
Query: 467 HEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDA 526
++ + +R F L FS P +FI + SQ +DLK++ + + E+ERR+ F++QPW ++A
Sbjct: 448 NQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEA 506
Query: 527 VIRYL 531
V R++
Sbjct: 507 VGRHI 511
>sp|O54772|SMRD2_RAT SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Rattus norvegicus
GN=Smarcd2 PE=2 SV=3
Length = 531
Score = 243 bits (621), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 140/425 (32%), Positives = 232/425 (54%), Gaps = 35/425 (8%)
Query: 127 PVRPPVVPMSNMVSPLKAMELTSAA-------RR--KKQKLPEKQLQERVAAILPESALY 177
P+RP + P M+ P + L A RR K++K+ +K L +R+ ++PES Y
Sbjct: 102 PLRPGMPP--TMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAY 159
Query: 178 TQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFA-----NQIKTIPKKPN 232
LL FE ++D + RK+++IQEA+K P ++ LRIY+ NTF+ P
Sbjct: 160 MDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKADGDNSGTAGTPG 219
Query: 233 AEPP-----TWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLY-P 286
P +W L++ G++L+D P ++ KFSSFFK + I LD+ LY P
Sbjct: 220 GTPAADKVASWELRVEGKLLDD------PSKQKR------KFSSFFKSLVIELDKELYGP 267
Query: 287 DNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDT 346
DNH++ W + +GF+VKR GD + L +++ P ++KL P L +LG+ T
Sbjct: 268 DNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQT 327
Query: 347 RPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQPI 406
R I+ A+W Y+K +LQ ++ C+ +++F +++F+ + K++ L P PI
Sbjct: 328 RAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPI 387
Query: 407 HLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIRKI 466
+ H I + N TACYD+ V+V P++ ++S LA+ +EI D I I I
Sbjct: 388 VINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESI 447
Query: 467 HEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDA 526
++ + +R F L FS P +FI + SQ +DLK++ + + E+ERR+ F++QPW ++A
Sbjct: 448 NQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEA 506
Query: 527 VIRYL 531
V R++
Sbjct: 507 VGRHI 511
>sp|E1BJD1|SMRD2_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Bos taurus GN=SMARCD2
PE=3 SV=1
Length = 531
Score = 240 bits (612), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 140/431 (32%), Positives = 233/431 (54%), Gaps = 47/431 (10%)
Query: 127 PVRPPVVPMSNMVSPLKAMELTSAA-------RR--KKQKLPEKQLQERVAAILPESALY 177
P+RP + P M+ P + L A RR K++K+ +K L +R+ ++PES Y
Sbjct: 102 PLRPGMPP--TMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAY 159
Query: 178 TQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKTIPKKPNAEP-- 235
LL FE ++D + RK+++IQEA+K P ++ LRIY+ NTF+ P K +
Sbjct: 160 MDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFS------PSKAEGDTAG 213
Query: 236 --------------PTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLD 281
+W L++ G++L+D P ++ KFSSFFK + I LD
Sbjct: 214 TTGTPGGTPAGDKVASWELRVEGKLLDD------PSKQKR------KFSSFFKSLVIELD 261
Query: 282 QRLY-PDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVL 340
+ LY PDNH++ W + +GF+VKR GD + L +++ P ++KL P L +L
Sbjct: 262 KELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLL 321
Query: 341 GIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHL 400
G+ TR I+ A+W Y+K +LQ ++ C+ +++F +++F+ + K++ L
Sbjct: 322 GVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLL 381
Query: 401 SPPQPIHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAIC 460
P PI + H I + N TACYD+ V+V P++ ++S LA+ +EI D I
Sbjct: 382 QHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIH 441
Query: 461 SAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQ 520
I I++ + +R F L FS P +FI + SQ +DLK++ + + E+ERR+ F++Q
Sbjct: 442 ETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQ 500
Query: 521 PWVEDAVIRYL 531
PW ++AV R++
Sbjct: 501 PWAQEAVGRHI 511
>sp|Q556Z0|SNF12_DICDI SWI/SNF complex component SNF12 homolog OS=Dictyostelium discoideum
GN=snf12-1 PE=3 SV=1
Length = 456
Score = 228 bits (582), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 130/385 (33%), Positives = 215/385 (55%), Gaps = 31/385 (8%)
Query: 165 ERVAAILPESALYTQLLEFEARVDAALTRKKVDIQEA-LKNPPCLQKTLRIYVFNTFANQ 223
E + + PE L++QLLEFE ++DA++ ++ +DIQEA +N +TLR+ ++NT++NQ
Sbjct: 68 EELISFAPECLLFSQLLEFEEKLDASINKRLIDIQEASRRNSIKNIRTLRLSIYNTYSNQ 127
Query: 224 ---IKTIPKKPNA--EPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYP---------KF 269
K N+ E P+W+L++ G++L D Q +V KS KF
Sbjct: 128 SAYYHLDNKSLNSVQERPSWSLRVEGKLL----DESQDELVNKSIKSSSSSSSTANKRKF 183
Query: 270 SSFFKRVTISLDQRLYPDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEK 329
SSFFK+V I + R W+ S++ +GFE+KR G++E + I + +++VP+K
Sbjct: 184 SSFFKKVFIQIGHR-----DTCEWDKSQTFTETDGFEIKRNGNQEVDIKILMYLDHVPQK 238
Query: 330 FKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKF 389
+K+ L ++L I DT+PRII A+WHY+K+ L I TCD L+ +F E+++F
Sbjct: 239 YKVLGGLSQLLNIHTDTKPRIILALWHYIKSNTLLDAETKKI-TCDENLKNIFSLEELQF 297
Query: 390 TMVSQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKN 449
+ Q + +HLSPP P+ ++ + LSG++ YD+ V+V PI N
Sbjct: 298 NQIPQLLREHLSPPDPLEFQYTLHLSGDAKDYEQAYDIQVEVDEPI------FNPNPTMR 351
Query: 450 KEIDQCDEAICSAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSA 509
KEI Q ++ I I+K+++H+R+R F S P+ F+N + KD ++ S
Sbjct: 352 KEISQLNDEINHHIQKVYQHKRKREFMEKLSSDPLGFLNDTTANLVKDFQVSKSTTSTGF 411
Query: 510 EKERRSDFFNQPWVEDAVIRYLNRK 534
E+ER + F+ QP E+ V YL+++
Sbjct: 412 EEERHASFYYQPMTEELVKNYLSKQ 436
>sp|Q9P7S3|SSR3_SCHPO SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr3 PE=1 SV=1
Length = 425
Score = 198 bits (504), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 208/400 (52%), Gaps = 26/400 (6%)
Query: 149 SAARRKKQKLPEKQLQERVAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCL 208
A +K ++ E+++ + + +PE+ Y L + E ++D+ + RK+ D+Q++L
Sbjct: 19 DAELKKSMRIIEREIPDSLLEKIPEAEDYIALQDLERKLDSLIVRKRFDLQDSLSRNSHK 78
Query: 209 QKTLRIYVFNTFANQIKTIPKKPNAEP----------PTWTLKIIGRILEDGVDPDQPGM 258
+ LR+Y+ +T ANQ K N E P WTL I GR+L V+PD
Sbjct: 79 TRILRMYIHSTVANQ-SWQQKGENQENNSGDINSLPIPEWTLHIEGRLL---VNPDDED- 133
Query: 259 VQKSNPLYPKFSSFFKRVTISL--DQRLYPDNHIIVW----ENSRSPAPHEGFEVKRKGD 312
K+ L P F++FF+++ I + LYP + + W +NS + G V RKGD
Sbjct: 134 -DKAFELAP-FTNFFRKIAIQILRSDDLYPSGNYVEWNKLPDNSNTS---NGITVTRKGD 188
Query: 313 KEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIF 372
+ V I L PE++KLS +LGI TRP I++ +W Y+K +LQ + +
Sbjct: 189 QSVDVKIMLYPEEHPERYKLSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLI 248
Query: 373 TCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLVDVP 432
CD L+ +F +++ F + + +++ L P PI + + I +S ++ +D+ ++
Sbjct: 249 NCDKALRDLFEADRLYFPRIPELMNRFLEPIDPIVIPYTINVSEHTVEKVTIFDIRINTE 308
Query: 433 FPIQRELSTLLANADKNKEIDQCDEAICSAIRKIHEHRRRRAFFLGFSQSPVEFINTLIE 492
P ++ + LA +I D+ + I+ I + + F FS+SP+EFIN IE
Sbjct: 309 DPRHSQIRSFLATMMSQDKIRSIDDKLTELIQAITYSQSKYDFMKKFSESPIEFINEWIE 368
Query: 493 SQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLN 532
SQS+DL++V + + ++R +D++ QPWV ++ YLN
Sbjct: 369 SQSRDLEIVLDGTNMNYAEKRSADYYQQPWVHESAFHYLN 408
>sp|P53628|SNF12_YEAST Transcription regulatory protein SNF12 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SNF12 PE=1 SV=1
Length = 566
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 116/276 (42%), Gaps = 54/276 (19%)
Query: 298 SPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEK--FKLSPPLMEVLGIEVDTRPRIIAAIW 355
+P +G ++KR G + I + PE+ SP L ++G++ T I +I+
Sbjct: 274 NPVDFDGLDIKRVGSENVECTISILRKSSPEEPFMSYSPQLTAIIGLKSGTSHDAIFSIY 333
Query: 356 HYVKARKLQHPNDPSIF-------------------------------------TCDPPL 378
Y+ +L ND S F T P
Sbjct: 334 KYIHLNELL-TNDESAFENLMGNRNNHNSNTSTSKMLDAASSQVSIVKLDTQLITLLPSS 392
Query: 379 QKVFGEEKMKFT-MVSQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLV-DVPF--- 433
K + MK T ++S S HL P QPI +++ +++ S G D+ V DV
Sbjct: 393 LKESSPDTMKLTDLLSLINSTHLLPLQPIEIDYTVRVDKASTYGELVLDIEVPDVNALKF 452
Query: 434 -PIQRELSTLLANADKN-KEIDQC-------DEAICSAIRKIHEHRRRRAFFLGFSQSPV 484
QRE A ++N +E++Q D+ I S + +HE +R FF S+ PV
Sbjct: 453 NNTQRESQIGAAELNENARELEQIKPKIALQDKEITSVLSNLHESNKRYRFFKKISEDPV 512
Query: 485 EFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQ 520
+ +N I S S LK+++G+ + + RR++F+ +
Sbjct: 513 KALNECIASTSNALKVLSGDEGYNEDMVRRANFYKE 548
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 33/141 (23%)
Query: 165 ERVAAILPESALYTQLLEFEARVD--------------AALTRKKVDIQEALK---NPPC 207
+ +A ++PE + QL++ E R+D A R K+ QE L N P
Sbjct: 63 DHLAELIPELYSFQQLVDSEKRLDHFIHLRNLHMKRMVAQWERSKLS-QEFLYPHLNFPN 121
Query: 208 LQKTLRIYVFNTFANQIKTIPKKPNA-----EPPTWTLKIIGRILEDGVDPDQPGMVQKS 262
+ K LRI++ N NQ + A E TWT++I GR+L++ VQ +
Sbjct: 122 V-KFLRIFISNVSENQPWQMDTNNEADLMALENATWTMRIEGRLLDN---------VQAN 171
Query: 263 NPLYPKFSSFFKRVTISLDQR 283
+P KFSSF + + + +
Sbjct: 172 DPAREKFSSFIESIVVDFKNK 192
>sp|P25632|RSC6_YEAST Chromatin structure-remodeling complex protein RSC6
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RSC6 PE=1 SV=1
Length = 483
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 93/449 (20%), Positives = 166/449 (36%), Gaps = 131/449 (29%)
Query: 179 QLLEFEARVDAALTRKKVDIQEAL------KNPPCLQKTLRIYVFNTFANQIKTIPKKP- 231
+L+E ++R+D LTR+++D L K+ P ++ LRIYV+NT + ++ P
Sbjct: 35 KLIEMDSRLDLYLTRRRLDTSINLPTNTKTKDHPPNKEMLRIYVYNTTESSPRSDSGTPA 94
Query: 232 NAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSF-------FKRVT------- 277
++ TWTL+I G++L + + P FS F FKR+
Sbjct: 95 DSGKTTWTLRIEGKLLHESANGKHP------------FSEFLEGVAVDFKRLKPLGMGKK 142
Query: 278 ----------ISLDQRLYPDNHIIVWENSRSP--------------------------AP 301
++L Q Y D + +N
Sbjct: 143 RKRDSSLSLPLNLQQPEYNDQDSTMGDNDNGEDEDSAEAESREEIVDALEWNYDENNVVE 202
Query: 302 HEGFEVKRKGDKEFTVNIRLEMNYVP-EKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKA 360
+G ++KR+G +I +++ V K + SP L ++G++ + + +I+ Y+
Sbjct: 203 FDGIDIKRQGKDNLRCSITIQLRGVDGGKVQYSPNLATLIGMQTGSVNDAVYSIYKYILI 262
Query: 361 RKL------------------------------------QHPND-PSI--FTCDPPLQKV 381
L P D P + D LQKV
Sbjct: 263 NNLFVTEQTEAQDGSNDAEDSSNENNNKNGAGDDDGVEGSTPKDKPELGEVKLDSLLQKV 322
Query: 382 FGEEKMKFTM--VSQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLVDVPFPIQREL 439
+ V Q +++ +SP PI L++ I LS ++ G DV ++
Sbjct: 323 LDTNAAHLPLMNVVQTVNKLVSPLPPIILDYTIDLSKDTTYGATTLDV----------DV 372
Query: 440 STLLA------NADKNKEIDQCDEAICSAIRK----IHEHRRRRAFFLGFSQSPVEFINT 489
S +L N K +E D D A I K ++ ++ FF S P E +
Sbjct: 373 SHILHQPQPQPNLQKEEETDAEDTAKLREITKLALQLNSSAQKYQFFHELSLHPRETLTH 432
Query: 490 LIESQSKDLKLVAGEGSRSAEKERRSDFF 518
+ S ++ ++ G+ + + R SD +
Sbjct: 433 YLWSSKQNELVLQGDQYFNEDAARTSDIY 461
>sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1
Length = 233
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 330 FKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMK- 388
KLSP L E LG+E +RP+ + +W Y+KA LQ PND CD L+ VF + +
Sbjct: 121 MKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFEVDTLHM 180
Query: 389 FTM 391
FTM
Sbjct: 181 FTM 183
>sp|Q05024|TRI1_YEAST Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TRI1 PE=1 SV=1
Length = 226
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 329 KFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMK 388
K LS PL + LG E R +++ IW Y+K LQ+P D CD ++ +FG++
Sbjct: 123 KVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKKMTM 182
Query: 389 FTMVSQKISQHLSPPQPI 406
F+M ++ +++HL P I
Sbjct: 183 FSM-NKLLTKHLFNPDEI 199
>sp|Q08747|UAF30_YEAST Upstream activation factor subunit UAF30 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1
SV=1
Length = 228
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 329 KFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMK 388
K LS L +LG TR ++ +W Y+KA LQ+PN+ CD L+ + G+
Sbjct: 123 KVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILGKSTNM 182
Query: 389 FTMVSQKISQHLSPPQPI 406
F M + ++ H++ P+ I
Sbjct: 183 FEM-HKILASHMTEPKKI 199
>sp|A9BEK6|TRMFO_PROM4 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO
OS=Prochlorococcus marinus (strain MIT 9211) GN=trmFO
PE=3 SV=1
Length = 474
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 11/138 (7%)
Query: 79 HAQLQAHLQAQGLSINQFQNAGIGNLGSSSPSNLTPGNASLKRMPQKPPVRPPVVPMSNM 138
+A LQ +A+ L+ Q G + + + L NA+L M KP + P + +
Sbjct: 338 NASLQFRKRAKLLAAGQITGTE-GYVAAVAGGWLAGTNAALLAMGHKPIIFPRNTMIGAL 396
Query: 139 VSPLKAMELTSAARRKK--QKLPEKQLQERVAAILPESALYTQLLEFEARVDAALTRKKV 196
+ EL S + RK Q +P +LP+ L TQ+ E AR A R
Sbjct: 397 THFISDWELRSDSNRKNSFQPMPPN------FGVLPK--LTTQIKEKRARYAAYRDRALD 448
Query: 197 DIQEALKNPPCLQKTLRI 214
+++ +++N CL + L I
Sbjct: 449 ELKASIRNHTCLAQELGI 466
>sp|Q5T4T6|SYC2L_HUMAN Synaptonemal complex protein 2-like OS=Homo sapiens GN=SYCP2L PE=1
SV=2
Length = 812
Score = 33.5 bits (75), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 240 LKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVT-ISLDQRLYPDNHIIV 292
LK I R L DG+ D+P ++++ L PK S+F+R T I + L D +I
Sbjct: 86 LKCIQRFLVDGLKEDEPLLIRQG--LIPKLVSWFERTTGILTSEGLASDTSLIC 137
>sp|Q68UT7|HUNK_PANTR Hormonally up-regulated neu tumor-associated kinase OS=Pan
troglodytes GN=HUNK PE=3 SV=1
Length = 714
Score = 32.3 bits (72), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/130 (20%), Positives = 60/130 (46%), Gaps = 22/130 (16%)
Query: 398 QHLSPPQPIHLEHKIKLSGNSPVGT-----ACYDVLVDVPFPIQRELSTLLANADKNKEI 452
+ LSP +H+ K+ + + T AC+ ++ + F + ++L L+
Sbjct: 341 EDLSPSVVLHMTEKLGYKNSDVINTVLSNRACH--ILAIYFLLNKKLERYLSGKS----- 393
Query: 453 DQCDEAICSAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKE 512
+++C R +++ + RA P E +++ ++DL+ A + + E+E
Sbjct: 394 -DIQDSLCYKTR-LYQIEKYRA--------PKESYEASLDTWTRDLEFHAVQDKKPKEQE 443
Query: 513 RRSDFFNQPW 522
+R DF ++P+
Sbjct: 444 KRGDFLHRPF 453
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 205,215,639
Number of Sequences: 539616
Number of extensions: 8717080
Number of successful extensions: 29429
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 149
Number of HSP's that attempted gapping in prelim test: 28675
Number of HSP's gapped (non-prelim): 565
length of query: 545
length of database: 191,569,459
effective HSP length: 122
effective length of query: 423
effective length of database: 125,736,307
effective search space: 53186457861
effective search space used: 53186457861
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)