Query 009056
Match_columns 545
No_of_seqs 214 out of 620
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 17:49:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uhr_A SWI/SNF related, matrix 100.0 3.4E-29 1.2E-33 215.5 5.5 88 322-409 4-91 (93)
2 1v31_A Hypothetical protein RA 99.9 1.8E-28 6.1E-33 211.0 6.7 87 323-409 5-91 (93)
3 1v32_A AT5G08430, hypothetical 99.9 3.1E-22 1.1E-26 174.5 7.7 73 331-403 15-93 (101)
4 3dac_M MDM4 protein; MDMX, MDM 96.2 0.0044 1.5E-07 55.5 4.8 75 330-404 25-108 (130)
5 1z1m_A Ubiquitin-protein ligas 95.6 0.014 4.9E-07 51.6 5.2 73 329-401 27-105 (119)
6 3fea_A MDM4 protein; HDMX, HDM 95.4 0.013 4.4E-07 50.6 4.1 75 329-403 15-98 (100)
7 1ycq_A MDM2, MDM2; anti-oncoge 95.3 0.036 1.2E-06 48.3 6.7 73 329-401 11-92 (107)
8 2z5s_M MDM4 protein, zebrafish 95.1 0.027 9.3E-07 50.8 5.7 76 329-404 23-107 (140)
9 2axi_A Ubiquitin-protein ligas 94.0 0.036 1.2E-06 48.8 3.5 73 329-401 11-92 (115)
10 3qrl_A Transcription initiatio 79.4 4.7 0.00016 36.8 7.2 89 207-326 7-98 (140)
11 3rls_A YAF9, protein AF-9 homo 52.7 55 0.0019 30.8 8.7 98 210-336 6-107 (175)
12 3e6c_C CPRK, cyclic nucleotide 32.8 23 0.00077 33.1 2.7 48 334-385 181-229 (250)
13 2kwl_A ACP, acyl carrier prote 32.2 33 0.0011 26.9 3.3 58 341-401 1-58 (84)
14 2zcw_A TTHA1359, transcription 25.8 31 0.0011 30.9 2.2 47 334-384 150-197 (202)
15 2l5g_B Putative uncharacterize 22.2 1.4E+02 0.0048 21.8 4.6 35 447-481 6-40 (42)
16 3b02_A Transcriptional regulat 21.2 39 0.0013 30.1 1.9 47 334-384 143-190 (195)
17 2fmy_A COOA, carbon monoxide o 20.0 47 0.0016 30.0 2.3 45 334-382 171-217 (220)
No 1
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.95 E-value=3.4e-29 Score=215.52 Aligned_cols=88 Identities=40% Similarity=0.764 Sum_probs=86.3
Q ss_pred eecccCccccCChhHHhhhCCCccChHHHHHHHHHHHHhcCCCCCCCCCeeecChhhhhhhCcCccchhHHHHHHHccCC
Q 009056 322 EMNYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLS 401 (545)
Q Consensus 322 ~~~~~Per~kLSp~La~~LG~~~~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cDe~Lk~lFg~d~i~f~~l~~lL~~HL~ 401 (545)
+++|+|++|+||++|++|||..++||++|+++||+|||.||||||+||+.|+||++|++|||+++|.|++|+++|++||.
T Consensus 4 ~~~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~ 83 (93)
T 1uhr_A 4 GSSGQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLM 83 (93)
T ss_dssp CCSSSCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEE
T ss_pred ccccCCCccCcCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceee
Q 009056 402 PPQPIHLE 409 (545)
Q Consensus 402 p~~PI~l~ 409 (545)
|++||+|+
T Consensus 84 p~~PI~i~ 91 (93)
T 1uhr_A 84 PPEPSGPS 91 (93)
T ss_dssp CSSCCCSS
T ss_pred CCCCeeCC
Confidence 99999884
No 2
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.95 E-value=1.8e-28 Score=211.04 Aligned_cols=87 Identities=78% Similarity=1.204 Sum_probs=85.0
Q ss_pred ecccCccccCChhHHhhhCCCccChHHHHHHHHHHHHhcCCCCCCCCCeeecChhhhhhhCcCccchhHHHHHHHccCCC
Q 009056 323 MNYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSP 402 (545)
Q Consensus 323 ~~~~Per~kLSp~La~~LG~~~~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cDe~Lk~lFg~d~i~f~~l~~lL~~HL~p 402 (545)
++|+|++|+||++|++|||..++||++|+++||+|||.||||||+||+.|+||++|++|||+++|.|++|+++|++||.|
T Consensus 5 ~~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl~p 84 (93)
T 1v31_A 5 SSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSP 84 (93)
T ss_dssp CCSSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCBC
T ss_pred CCCCCCccccCHHHHHHHCCCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceee
Q 009056 403 PQPIHLE 409 (545)
Q Consensus 403 ~~PI~l~ 409 (545)
++||+|+
T Consensus 85 ~~Pi~~~ 91 (93)
T 1v31_A 85 PPPSGPS 91 (93)
T ss_dssp CCCSSCC
T ss_pred CCCeeCC
Confidence 9999874
No 3
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.86 E-value=3.1e-22 Score=174.48 Aligned_cols=73 Identities=25% Similarity=0.339 Sum_probs=70.4
Q ss_pred cCChhHHhhh---CC---CccChHHHHHHHHHHHHhcCCCCCCCCCeeecChhhhhhhCcCccchhHHHHHHHccCCCC
Q 009056 331 KLSPPLMEVL---GI---EVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPP 403 (545)
Q Consensus 331 kLSp~La~~L---G~---~~~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cDe~Lk~lFg~d~i~f~~l~~lL~~HL~p~ 403 (545)
.+|++|++|| |. .++||++|+++||+|||+||||||+||+.|+||++|+.|||+++|.|++|+++|.+||.+.
T Consensus 15 w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~klL~~Hl~~~ 93 (101)
T 1v32_A 15 WGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKEN 93 (101)
T ss_dssp SSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHSCSC
T ss_pred cCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHHHHHHHHcCcc
Confidence 7999999999 88 5799999999999999999999999999999999999999999999999999999999874
No 4
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=96.19 E-value=0.0044 Score=55.54 Aligned_cols=75 Identities=19% Similarity=0.355 Sum_probs=64.4
Q ss_pred ccCChhHHhhh---CC--CccChHHHHHHHHHHHHhcCCCCCCCCCeeecC-hhhhhhhCcCccchhH---HHHHHHccC
Q 009056 330 FKLSPPLMEVL---GI--EVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCD-PPLQKVFGEEKMKFTM---VSQKISQHL 400 (545)
Q Consensus 330 ~kLSp~La~~L---G~--~~~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cD-e~Lk~lFg~d~i~f~~---l~~lL~~HL 400 (545)
++--++|-.|| |. +.-|+.+|+.-+=+||-.+.|.|+.+..+|.|- +.|.++||+++|.+.+ |.+.|.++|
T Consensus 25 Vrpk~~lL~iLq~aGA~~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llGv~sFSVkdp~~L~~mL~~NL 104 (130)
T 3dac_M 25 VHPRAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPLYEMLKRNL 104 (130)
T ss_dssp EEECHHHHHHHHHTTCCCSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTSCHHHHHHHHHHE
T ss_pred cCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccCCcceeecCcHHHHHHHHhhe
Confidence 45556677776 44 578999999999999999999999999999996 8899999999999888 999999999
Q ss_pred CCCC
Q 009056 401 SPPQ 404 (545)
Q Consensus 401 ~p~~ 404 (545)
.+..
T Consensus 105 v~~~ 108 (130)
T 3dac_M 105 VILN 108 (130)
T ss_dssp EEC-
T ss_pred eccc
Confidence 7654
No 5
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=95.57 E-value=0.014 Score=51.62 Aligned_cols=73 Identities=16% Similarity=0.306 Sum_probs=58.0
Q ss_pred cccCChhHHhhh---CC--CccChHHHHHHHHHHHHhcCCCCCCCCCeeecC-hhhhhhhCcCccchhHHHHHHHccCC
Q 009056 329 KFKLSPPLMEVL---GI--EVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCD-PPLQKVFGEEKMKFTMVSQKISQHLS 401 (545)
Q Consensus 329 r~kLSp~La~~L---G~--~~~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cD-e~Lk~lFg~d~i~f~~l~~lL~~HL~ 401 (545)
.++-.++|-.|| |. ..-|+.+|+.-|=+||-.+.|.|+.+..+|.|. +.|-+|||++.|.+.+...+..-|..
T Consensus 27 ~VrPk~~LLkiLq~aGA~~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~ 105 (119)
T 1z1m_A 27 LVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYR 105 (119)
T ss_dssp CCCCSTTSHHHHHHHTCCCSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEETTCHHHHHHHHSC
T ss_pred cccccHHHHHHHHHhccccceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHH
Confidence 445556666665 44 567999999999999999999999999999997 77899999999987765555444443
No 6
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=95.35 E-value=0.013 Score=50.57 Aligned_cols=75 Identities=16% Similarity=0.367 Sum_probs=63.0
Q ss_pred cccCChhHHhhh---CC--CccChHHHHHHHHHHHHhcCCCCCCCCCeeecC-hhhhhhhCcCccchh---HHHHHHHcc
Q 009056 329 KFKLSPPLMEVL---GI--EVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCD-PPLQKVFGEEKMKFT---MVSQKISQH 399 (545)
Q Consensus 329 r~kLSp~La~~L---G~--~~~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cD-e~Lk~lFg~d~i~f~---~l~~lL~~H 399 (545)
.++--++|-.|| |. +.-|+.+|+.-+=+||-.+.|-|+.+..+|.|. +.|-++||++++.+. .|.+.|.+|
T Consensus 15 ~Vrpk~~lL~iLq~aGA~~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G~~sFsvkdp~~l~~ml~~n 94 (100)
T 3fea_A 15 QVRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKN 94 (100)
T ss_dssp CBEECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHTCSEEETTCCHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccCCcceeecCchHHHHHHHhh
Confidence 355566777776 44 578999999999999999999999999999996 789999999998876 788899988
Q ss_pred CCCC
Q 009056 400 LSPP 403 (545)
Q Consensus 400 L~p~ 403 (545)
|...
T Consensus 95 Lv~~ 98 (100)
T 3fea_A 95 LVTL 98 (100)
T ss_dssp EEC-
T ss_pred ceec
Confidence 8543
No 7
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=95.30 E-value=0.036 Score=48.33 Aligned_cols=73 Identities=26% Similarity=0.446 Sum_probs=59.4
Q ss_pred cccCChhHHhhh---CC--CccChHHHHHHHHHHHHhcCCCCCCCCCeeecC-hhhhhhhCcCccchhHHH---HHHHcc
Q 009056 329 KFKLSPPLMEVL---GI--EVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCD-PPLQKVFGEEKMKFTMVS---QKISQH 399 (545)
Q Consensus 329 r~kLSp~La~~L---G~--~~~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cD-e~Lk~lFg~d~i~f~~l~---~lL~~H 399 (545)
.++-.+.|..|| |. ..-|+.+|+.-|=+||-.+.|.|+.+..+|.|. +.|-++||++.|.+.+.. +.|.+.
T Consensus 11 ~VrPk~~LLklL~~~GA~~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~n 90 (107)
T 1ycq_A 11 LVQPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEPRRLYAMISRN 90 (107)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTCSEEETTCHHHHHHHHHTT
T ss_pred ccCccHHHHHHHHHhccccceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 455666777776 33 567999999999999999999999999999997 778999999999877655 555555
Q ss_pred CC
Q 009056 400 LS 401 (545)
Q Consensus 400 L~ 401 (545)
|.
T Consensus 91 Lv 92 (107)
T 1ycq_A 91 LV 92 (107)
T ss_dssp EE
T ss_pred cc
Confidence 53
No 8
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=95.12 E-value=0.027 Score=50.80 Aligned_cols=76 Identities=20% Similarity=0.363 Sum_probs=62.7
Q ss_pred cccCChhHHhhh---CC--CccChHHHHHHHHHHHHhcCCCCCCCCCeeecC-hhhhhhhCcCccchhH---HHHHHHcc
Q 009056 329 KFKLSPPLMEVL---GI--EVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCD-PPLQKVFGEEKMKFTM---VSQKISQH 399 (545)
Q Consensus 329 r~kLSp~La~~L---G~--~~~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cD-e~Lk~lFg~d~i~f~~---l~~lL~~H 399 (545)
.++--++|-.|| |. +.-|+-+|+.-|=+||-.+.|.|+.+..+|.|. +.|-+|||++.|.+.+ |.+.|.+.
T Consensus 23 ~VrPk~~LLkiLq~aGA~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~Gv~sFSVKdp~~ly~ML~~N 102 (140)
T 2z5s_M 23 QVHPRAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPVYEMLKRN 102 (140)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTBCHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHhCcccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 566777888887 44 578999999999999999999999999999997 7789999999988665 55777776
Q ss_pred CCCCC
Q 009056 400 LSPPQ 404 (545)
Q Consensus 400 L~p~~ 404 (545)
|.+..
T Consensus 103 Lv~~~ 107 (140)
T 2z5s_M 103 LVILN 107 (140)
T ss_dssp EECC-
T ss_pred ccccc
Confidence 65543
No 9
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=93.97 E-value=0.036 Score=48.81 Aligned_cols=73 Identities=19% Similarity=0.365 Sum_probs=58.3
Q ss_pred cccCChhHHhhh---CC--CccChHHHHHHHHHHHHhcCCCCCCCCCeeecC-hhhhhhhCcCccchhH---HHHHHHcc
Q 009056 329 KFKLSPPLMEVL---GI--EVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCD-PPLQKVFGEEKMKFTM---VSQKISQH 399 (545)
Q Consensus 329 r~kLSp~La~~L---G~--~~~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cD-e~Lk~lFg~d~i~f~~---l~~lL~~H 399 (545)
.++-.+.|..|| |. ..-|+.+|+.-+=+||-.+.|.|+.+..+|.|. +.|-++||++.|.+.+ +.+.|.+.
T Consensus 11 ~VrPk~~LLklLq~~GA~~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~n 90 (115)
T 2axi_A 11 LVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRN 90 (115)
T ss_dssp EEEECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEETTCHHHHHHHHHTT
T ss_pred ccCccHHHHHHHHHhccccceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 345566777776 33 467899999999999999999999999999997 7789999999988766 44555555
Q ss_pred CC
Q 009056 400 LS 401 (545)
Q Consensus 400 L~ 401 (545)
|.
T Consensus 91 Lv 92 (115)
T 2axi_A 91 LV 92 (115)
T ss_dssp EE
T ss_pred cc
Confidence 53
No 10
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=79.38 E-value=4.7 Score=36.81 Aligned_cols=89 Identities=18% Similarity=0.396 Sum_probs=53.8
Q ss_pred CCcceEEEEEEEecccCcccCCCCCCCCCC--ceEEEEEEEEcCCCCCCCCCCCcCCCCCCCccc-ccccceeEEeeCCC
Q 009056 207 CLQKTLRIYVFNTFANQIKTIPKKPNAEPP--TWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKF-SSFFKRVTISLDQR 283 (545)
Q Consensus 207 k~~rtLRI~IsNT~enQ~wq~~~~~~~~~p--sWtLrIEGRLLdd~~~~~~~~~~~~~~~~~~KF-SsFfk~I~VelD~~ 283 (545)
.++||+||......-+.+-. ..+-+ .|++.|- |++.+.+ .. +.||++++..|.++
T Consensus 7 ~vkrtvr~~T~Q~~~~~~~~-----~eg~~~h~WtieV~--vr~~~g~---------------ei~~~~i~kV~f~LH~s 64 (140)
T 3qrl_A 7 TVKRTIRIKTQQHILPEVPP-----VENFPVRQWSIEIV--LLDDEGK---------------EIPATIFDKVIYHLHPT 64 (140)
T ss_dssp EEEEEEEEEEEEEECTTSCC-----BTTBCCEEEEEEEE--EECTTSC---------------EECCTTEEEEEEECCTT
T ss_pred ceEEEEEEEEeeeeCCCCCC-----CCCCcccEeeEEEE--EeCCCCC---------------cCchheEEEEEEEeCCC
Confidence 47899999988664322110 11234 7995443 3333211 13 47999999999986
Q ss_pred CCCCCceeEecCCCCCCCCCceEEeecCCceeeEEEEEeeccc
Q 009056 284 LYPDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYV 326 (545)
Q Consensus 284 lyp~~~~VEW~k~~s~~efDGfeIKR~G~~~~~itI~L~~~~~ 326 (545)
--+...+|+ .+ =|+|.+.|=-++.+.|.|++...
T Consensus 65 F~np~r~v~--~p-------PF~v~e~GWGeF~i~I~i~f~~~ 98 (140)
T 3qrl_A 65 FANPNRTFT--DP-------PFRIEEQGWGGFPLDISVFLLEK 98 (140)
T ss_dssp SSSCEEEEC--ST-------TCCEEEEESSCCCEEEEEEEGGG
T ss_pred CCCCeEEEc--CC-------CcEEEEEEeeeEEEEEEEEEecC
Confidence 322222232 22 38899999777788887776543
No 11
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=52.67 E-value=55 Score=30.78 Aligned_cols=98 Identities=24% Similarity=0.348 Sum_probs=58.3
Q ss_pred ceEEEEEEEecccCcccCC-CCCCCCCCceEEEEEEEEcCCCCCCCCCCCcCCCCCCCcccccccceeEEeeCCCCCCCC
Q 009056 210 KTLRIYVFNTFANQIKTIP-KKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLYPDN 288 (545)
Q Consensus 210 rtLRI~IsNT~enQ~wq~~-~~~~~~~psWtLrIEGRLLdd~~~~~~~~~~~~~~~~~~KFSsFfk~I~VelD~~lyp~~ 288 (545)
=.-+|.|-|++.-=+.... ..+...--.||+.|-| .. + ...|.||++++..|.++. +..
T Consensus 6 i~kpIv~Gn~a~~l~~~~~~~~~~~~TH~WtVyVr~----~~-~--------------edis~~v~KV~F~LHpSF-~np 65 (175)
T 3rls_A 6 VSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRG----PQ-N--------------EDISYFIKKVVFKLHDTY-PNP 65 (175)
T ss_dssp EEEEEEEEEEEEECCSCCCTTCCTTCCEEEEEEEEC----GG-G--------------CCCTTTEEEEEEECCTTS-SSC
T ss_pred EEeCEEEcceeEECCccccCCCCCCCcEEEEEEEEC----CC-C--------------CChhheEEEEEEEcCCCC-CCC
Confidence 3456777788753321111 1112234579998754 11 1 126789999999999764 432
Q ss_pred -ceeEecCCCCCCCCCceEEeecCCceeeEEEEEeeccc--CccccCChhH
Q 009056 289 -HIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYV--PEKFKLSPPL 336 (545)
Q Consensus 289 -~~VEW~k~~s~~efDGfeIKR~G~~~~~itI~L~~~~~--Per~kLSp~L 336 (545)
.+| +.+ =|+|.+.|=-++.+.|.|++... ...+.+.-.|
T Consensus 66 ~Rvv--~~P-------PFevtE~GWGeF~i~I~i~F~~~~~ek~i~i~H~L 107 (175)
T 3rls_A 66 VRSI--EAP-------PFELTETGWGEFDINIKVYFVEEANEKVLNFYHRL 107 (175)
T ss_dssp EEEE--CSS-------SEEEEEEESSCCEEEEEEEECGGGCCCCEEEEEEC
T ss_pred cEEE--eCC-------CCEEEEeEEeeEEEEEEEEEeCCCCCccEEEEEEE
Confidence 233 232 39999999888888888876553 2344444443
No 12
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=32.76 E-value=23 Score=33.08 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=37.1
Q ss_pred hhHHhhhCCCccChHHHHHHHHHHHHhcCCCCCCCCCeeecC-hhhhhhhCcC
Q 009056 334 PPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCD-PPLQKVFGEE 385 (545)
Q Consensus 334 p~La~~LG~~~~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cD-e~Lk~lFg~d 385 (545)
.+||++||++..|-..+++ -.+..|+..-..++++++| +.|+.+.+.+
T Consensus 181 ~~iA~~lG~sr~tvsR~l~----~L~~~g~I~~~~~~i~i~d~~~L~~~a~~~ 229 (250)
T 3e6c_C 181 KSIGEITGVHHVTVSRVLA----SLKRENILDKKKNKIIVYNLGELKHLSEQT 229 (250)
T ss_dssp HHHHHHHTCCHHHHHHHHH----HHHHTTSEEECSSEEEESCHHHHHHHHTSS
T ss_pred HHHHHHhCCcHHHHHHHHH----HHHHCCCeEeCCCEEEEecHHHHHHHHccC
Confidence 4699999987666555554 4578899888888888889 7888888765
No 13
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=32.18 E-value=33 Score=26.86 Aligned_cols=58 Identities=7% Similarity=0.102 Sum_probs=46.1
Q ss_pred CCCccChHHHHHHHHHHHHhcCCCCCCCCCeeecChhhhhhhCcCccchhHHHHHHHccCC
Q 009056 341 GIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLS 401 (545)
Q Consensus 341 G~~~~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cDe~Lk~lFg~d~i~f~~l~~lL~~HL~ 401 (545)
|...+++.++...|.+.|...-=.+ ...|..|..|..-+|-|++.+.+|...|..+|-
T Consensus 1 ~~~~m~~~~i~~~l~~~i~~~l~~~---~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fg 58 (84)
T 2kwl_A 1 GPGSMDNDEIFSKVRSIISEQLDKK---EDEITTDSRFVEDLNADSLDIYELLYLLEEAFD 58 (84)
T ss_dssp CCCCSTHHHHHHHHHHHHHHHHCCC---GGGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCC---cccCCCCCchhhhcCCCHHHHHHHHHHHHHHHC
Confidence 5567899999999999887752122 356888999977799999999999999987764
No 14
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=25.78 E-value=31 Score=30.91 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=36.1
Q ss_pred hhHHhhhCCCccChHHHHHHHHHHHHhcCCCCCCCCCeeecC-hhhhhhhCc
Q 009056 334 PPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCD-PPLQKVFGE 384 (545)
Q Consensus 334 p~La~~LG~~~~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cD-e~Lk~lFg~ 384 (545)
.+||++||++..|-..+++.| +..|+..-+.++++.+| +.|+.+.+.
T Consensus 150 ~~lA~~lg~sr~tvsR~l~~L----~~~g~I~~~~~~i~i~d~~~L~~~~~~ 197 (202)
T 2zcw_A 150 DELAAAVGSVRETVTKVIGEL----AREGYIRSGYGKIQLLDLKGLKELAES 197 (202)
T ss_dssp HHHHHHHTCCHHHHHHHHHHH----HHTTSEEEETTEEEESCHHHHHHHHTS
T ss_pred HHHHHHhCCCHHHHHHHHHHH----HHCCCEEeCCCEEEEeCHHHHHHHhcc
Confidence 479999999877666666654 88899887778888888 567777653
No 15
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.23 E-value=1.4e+02 Score=21.79 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=25.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009056 447 DKNKEIDQCDEAICSAIRKIHEHRRRRAFFLGFSQ 481 (545)
Q Consensus 447 ~~~keI~~LD~qIa~~i~~I~~~k~rr~F~~~fS~ 481 (545)
+....|...|..|+..-.+|++.+.|-.-+.+-|.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a~ 40 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAA 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34567888888888888888888777665555443
No 16
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=21.21 E-value=39 Score=30.14 Aligned_cols=47 Identities=11% Similarity=0.236 Sum_probs=36.0
Q ss_pred hhHHhhhCCCccChHHHHHHHHHHHHhcCCCCCCCCCeeecC-hhhhhhhCc
Q 009056 334 PPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCD-PPLQKVFGE 384 (545)
Q Consensus 334 p~La~~LG~~~~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cD-e~Lk~lFg~ 384 (545)
.+||++||++..|-..+++.| +..|+..-..++++.+| +.|+.+.+.
T Consensus 143 ~~lA~~lg~sr~tvsR~l~~L----~~~g~I~~~~~~i~i~d~~~L~~~~~~ 190 (195)
T 3b02_A 143 EEIADATASIRESVSKVLADL----RREGLIATAYRRVYLLDLAALEREAGS 190 (195)
T ss_dssp HHHHHTTTSCHHHHHHHHHHH----HHHTSEEEETTEEEECCHHHHHHHHCS
T ss_pred HHHHHHhCCCHHHHHHHHHHH----HHCCCEEecCCEEEEeCHHHHHHHhcc
Confidence 479999999877766666664 78888887777888888 478777653
No 17
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=20.04 E-value=47 Score=30.04 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=34.6
Q ss_pred hhHHhhhCCCccChHHHHHHHHHHHHhcCCCCCC-CCCeeecC-hhhhhhh
Q 009056 334 PPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPN-DPSIFTCD-PPLQKVF 382 (545)
Q Consensus 334 p~La~~LG~~~~TR~eiv~~LW~YIK~n~Lqdp~-dkr~I~cD-e~Lk~lF 382 (545)
.+||++||++..|-..+++.| +..|+..-. .++++.+| +.|+.+.
T Consensus 171 ~~lA~~lg~sr~tvsR~l~~l----~~~g~I~~~~~~~i~i~d~~~L~~~~ 217 (220)
T 2fmy_A 171 EEIALMLGTTRQTVSVLLNDF----KKMGILERVNQRTLLLKDLQKLKEFS 217 (220)
T ss_dssp HHHHHHHTSCHHHHHHHHHHH----HHTTSEEESSSSEEEESCHHHHHHHC
T ss_pred HHHHHHhCCcHHHHHHHHHHH----HHCCCEEEcCCCEEEEcCHHHHHHHh
Confidence 579999999887777777665 888998875 67777888 4676654
Done!