BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009058
(545 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XIA4|CCS1_ARATH Cytochrome c biogenesis protein CCS1, chloroplastic OS=Arabidopsis
thaliana GN=CCS1 PE=2 SV=1
Length = 547
Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/542 (71%), Positives = 450/542 (83%), Gaps = 20/542 (3%)
Query: 15 ILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLRTSQDVKKKKD---NVSKKIVFSDSSP 71
IL +H P + R ++L + +CKL+ QD ++ N++K I SDS+P
Sbjct: 9 ILHFSKIHPFSRPSSYLCRTRNVSLIT--NCKLQKPQDGNQRSSSNRNLTKTISLSDSAP 66
Query: 72 PSLKNDEVSGEVESKNGVIG------------LVKRLPRRVLAALSNLPLAIGEMAAIAA 119
P E +G+ K G G +K LPR+VL+ LSNLPLAI EM IAA
Sbjct: 67 PV---TEETGDGIVKGGGNGGGGGGDGRGGLGFLKILPRKVLSVLSNLPLAITEMFTIAA 123
Query: 120 LMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLS 179
LMALGT IEQGE PDFYFQKYPEDNPV GFFTWRWI TLG DHM+S+PIFLG+LV++ S
Sbjct: 124 LMALGTVIEQGETPDFYFQKYPEDNPVLGFFTWRWISTLGLDHMYSAPIFLGMLVLLAAS 183
Query: 180 LMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKG 239
LMACTYTTQIPLVKVARRWSF+ S EAI+KQEF+DTLPRASIQDLG+ILMG G+EVF+KG
Sbjct: 184 LMACTYTTQIPLVKVARRWSFMKSDEAIKKQEFADTLPRASIQDLGMILMGDGFEVFMKG 243
Query: 240 PSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGF 299
PSLYAFKGL GRFAPIGVH+AMLLIM GGTLSATGSFRGSVTVPQGLNFV+GDVL P GF
Sbjct: 244 PSLYAFKGLAGRFAPIGVHIAMLLIMVGGTLSATGSFRGSVTVPQGLNFVMGDVLAPIGF 303
Query: 300 LSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGI 359
S PTDAF+TEVHVN+F MDYYDSGEV QFHSDLSL D+ GKEV+RKTISVNDPLRYGG+
Sbjct: 304 FSIPTDAFNTEVHVNRFTMDYYDSGEVSQFHSDLSLRDLNGKEVLRKTISVNDPLRYGGV 363
Query: 360 TIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGISMLAR 419
T+YQTDWSFSALQV K+ EGPFNLAMAP+K+NGDKKL+GTFLP+GD N+PNVKGISMLAR
Sbjct: 364 TVYQTDWSFSALQVTKDGEGPFNLAMAPIKINGDKKLYGTFLPVGDTNAPNVKGISMLAR 423
Query: 420 DLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFG 479
DLQSIV+YD +GKF G+RRP+SKLPI+I+G KIVI DAIGSTGL+LKTDPGVP+VYAGFG
Sbjct: 424 DLQSIVVYDLDGKFAGIRRPSSKLPIEINGMKIVIEDAIGSTGLELKTDPGVPVVYAGFG 483
Query: 480 ALMLTTCISFLSHTQIWALQDGTSVIIGGKTNRAKAEFPDDMNRLLDRVPELVESSLSKQ 539
ALMLTTCIS+LSH+QIWALQ+GT++++GGKTNRAK +FPDDMNRLLD+VPEL++ + S
Sbjct: 484 ALMLTTCISYLSHSQIWALQNGTALVVGGKTNRAKNQFPDDMNRLLDQVPELIKKNTSVV 543
Query: 540 SD 541
S+
Sbjct: 544 SE 545
>sp|Q75KA9|CCS1_ORYSJ Cytochrome c biogenesis protein CCS1, chloroplastic OS=Oryza sativa
subsp. japonica GN=CCS1 PE=2 SV=1
Length = 564
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/490 (74%), Positives = 416/490 (84%), Gaps = 13/490 (2%)
Query: 62 KKIVFSDSSPPSLKNDEVSGEV-------------ESKNGVIGLVKRLPRRVLAALSNLP 108
K++VF D++PP + G +N +GLV+RL +R L+ LSNLP
Sbjct: 67 KQVVFFDAAPPVSQRGGGGGGEGEGEGEGEGKVARRKENAALGLVRRLTKRTLSLLSNLP 126
Query: 109 LAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPI 168
LAI EM AIAALMALGT I+QGE P +YF+K+PEDNPVFGF TWRWILT GFDHMFSSP+
Sbjct: 127 LAISEMFAIAALMALGTVIDQGEAPSYYFEKFPEDNPVFGFITWRWILTPGFDHMFSSPV 186
Query: 169 FLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVIL 228
FLGLL ++ SLMACTYTTQIP+VKVARRWSF+HSA +IRKQEF+++LPRASIQDLGVIL
Sbjct: 187 FLGLLALLAASLMACTYTTQIPIVKVARRWSFMHSAGSIRKQEFAESLPRASIQDLGVIL 246
Query: 229 MGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNF 288
MG GYEVF KGPSLYAFKGL GRFAPIGVH+AM+ IMAG TLSATGSF+GSV VPQGLNF
Sbjct: 247 MGYGYEVFTKGPSLYAFKGLAGRFAPIGVHIAMIFIMAGATLSATGSFKGSVDVPQGLNF 306
Query: 289 VVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTI 348
V+GDV+ P G LS D F+TEVHVN+FYM+YYDSGEV QF+SDLSLFD+ GKEVMRKTI
Sbjct: 307 VIGDVMKPKGVLSFVPDVFNTEVHVNRFYMEYYDSGEVSQFYSDLSLFDLDGKEVMRKTI 366
Query: 349 SVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNS 408
VNDPLRYGG+TIYQTDW FSALQV KN EGPFNLAMAPLK+NGDKKLFGT LPL + S
Sbjct: 367 KVNDPLRYGGVTIYQTDWGFSALQVKKNGEGPFNLAMAPLKLNGDKKLFGTLLPLENSGS 426
Query: 409 PNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTD 468
NVKGISMLARDLQSIV+YDQEGKF GVRRP+SKLPI+IDG +IVI DAIGSTGLDLKTD
Sbjct: 427 SNVKGISMLARDLQSIVLYDQEGKFVGVRRPSSKLPIEIDGNEIVIEDAIGSTGLDLKTD 486
Query: 469 PGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVIIGGKTNRAKAEFPDDMNRLLDRV 528
PG+PIVYAGFGALMLTTCIS+LSH+QIWALQDG++V+IGGKTNRAK EF ++MNRLLD+V
Sbjct: 487 PGIPIVYAGFGALMLTTCISYLSHSQIWALQDGSTVVIGGKTNRAKLEFSEEMNRLLDKV 546
Query: 529 PELVESSLSK 538
PEL+ + K
Sbjct: 547 PELISVNEKK 556
>sp|Q8GTZ9|CCS1_CHLRE Cytochrome c biogenesis protein CCS1, chloroplastic
OS=Chlamydomonas reinhardtii GN=CCS1 PE=1 SV=2
Length = 613
Score = 408 bits (1048), Expect = e-113, Method: Compositional matrix adjust.
Identities = 239/557 (42%), Positives = 322/557 (57%), Gaps = 70/557 (12%)
Query: 43 ISCKLRTSQDVKKKKDNVSKKIVFSDSSP-------------PSLKNDEVSGEVESKNGV 89
+ C + Q KKK NV+ K+ ++ P PS +D S G
Sbjct: 36 VRCFAKGGQPGDKKKLNVTDKLRLGNTPPTLDVLKAPRPTDAPSAIDDAPSTSGLGLGGG 95
Query: 90 IGLVKRLP---------RRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKY 140
+ + L RR++ LS+LP AI MA IA L LGT I Q + ++Y Y
Sbjct: 96 VASPRTLVQSNAVQVAWRRLMKELSSLPRAIAIMALIAVLSGLGTFIPQNKSIEYYLVNY 155
Query: 141 PED-NPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWS 199
P+ V GF T ILTL DH++++ F + ++ SL ACTYT Q P VKVA+RW
Sbjct: 156 PDGAEKVLGFLTGDLILTLQLDHIYTADYFYLSMGLLAASLAACTYTRQWPAVKVAQRWR 215
Query: 200 FLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHL 259
FL +++ KQ ++ LP A + DLG IL+ GY+VF+K SLY FKGL G+ PIGVH
Sbjct: 216 FLTQPKSLLKQGRTEVLPNARVSDLGAILLQRGYQVFVKDGSLYGFKGLAGKLGPIGVHA 275
Query: 260 AMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMD 319
A+LL + G S G+ +G+V P+G +F V L P+ +++ + S +HVNKF +D
Sbjct: 276 ALLLCLFGTAWSGFGTLKGNVMCPEGQDFQVASFLQPSSPIASMPASASNVIHVNKFTID 335
Query: 320 YYDSGEVKQFHSDLSLFD--IGGKEVMRKTISVNDPLRYGGITIYQTDWSFSA--LQVLK 375
Y G V QF+SDLSL D GGKE+MRKTISVNDP R+ G+T+YQTDWS SA L+VL
Sbjct: 336 YRPDGSVAQFYSDLSLLDPAQGGKEMMRKTISVNDPFRFNGVTMYQTDWSLSAVTLRVLG 395
Query: 376 ND-----------------------------------EGPFNLAMAPL--KVNGDKKLFG 398
D FNL MA L K +L+
Sbjct: 396 QDAPLARAAQAAEAQAAASTSGPTSSASSTSDALPQQRTAFNLPMASLEGKPGVAGRLWA 455
Query: 399 TFLPLG----DVNSPNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVI 454
TFLPL D ++P KGIS+LARD QS+V YD +G+F GVRRP S PI+++G +V+
Sbjct: 456 TFLPLAEPGQDGSAP--KGISILARDPQSVVFYDAKGQFVGVRRPGSGKPIEVEGLALVV 513
Query: 455 VDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVIIGGKTNRAK 514
D G+TGL+LK+DPGVP VYAGFG LM+TT IS+LSH+Q+WALQ G+S+ + G+TNRAK
Sbjct: 514 EDVTGATGLELKSDPGVPAVYAGFGGLMVTTLISYLSHSQVWALQQGSSLFVSGRTNRAK 573
Query: 515 AEFPDDMNRLLDRVPEL 531
F +++ +L+ VPEL
Sbjct: 574 LAFDRELDDILNAVPEL 590
>sp|B1WRN9|CCS1_CYAA5 Cytochrome c biogenesis protein CcsB OS=Cyanothece sp. (strain ATCC
51142) GN=ccsB PE=3 SV=1
Length = 451
Score = 346 bits (887), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 181/444 (40%), Positives = 271/444 (61%), Gaps = 10/444 (2%)
Query: 90 IGLVKRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGF 149
+ L K+ R+++ +++L LAI + AIA GT IEQGE FY Q YPED +FGF
Sbjct: 13 LSLPKQGFRQLIKIVADLRLAIVLLLAIALFSISGTVIEQGETISFYQQNYPEDPALFGF 72
Query: 150 FTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRK 209
TW+ IL LG +H++++ FL LLV+ G SL CT+T Q P +K AR+W+F A K
Sbjct: 73 LTWKVILILGLNHVYTTWWFLSLLVLFGTSLTTCTFTRQFPALKAARKWNFYQKARQFEK 132
Query: 210 QEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGT 269
S L ++ + +L GY+ F + ++YA KG++G+ PI VH AML+I+ G
Sbjct: 133 LALSTELAINDLKFVNNLLEQKGYKTFQENQAIYARKGIIGKIGPIVVHAAMLIILGGAI 192
Query: 270 LSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQF 329
A F VP G F V +++ G LS P + VN+F++DY G + QF
Sbjct: 193 WGALTGFLAQAMVPTGSEFKVNNII-EAGPLSQPQIPKDWGIRVNRFWIDYTPDGTIDQF 251
Query: 330 HSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLK 389
+SDLS+ + G+E+ KTI VN+PLRY G+T YQTDW + +Q N+ F L MA L
Sbjct: 252 YSDLSVINNDGEELKHKTIYVNEPLRYHGVTFYQTDWGIAGVQAQVNNSPIFQLPMALLN 311
Query: 390 VNGDKKLFGTFLPLGDVNSPNV-KGISMLARDLQ-SIVIYDQEGKFTGVRRPNSKLPIDI 447
NG+ +++GT++P P++ +G+S+LA+DLQ ++++YDQ+G RP + +DI
Sbjct: 312 TNGNGRIWGTWIP----TKPDLSEGVSLLAKDLQGTMMVYDQKGDLYSAVRPG--MILDI 365
Query: 448 DGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVIIG 507
+G ++ I IGSTGL +K DPG+P VY GFG LM+ +S++SH+QIW LQ+ IG
Sbjct: 366 NGVRLKIYQLIGSTGLQIKADPGIPFVYTGFGLLMMGVIMSYVSHSQIWVLQEDEHCYIG 425
Query: 508 GKTNRAKAEFPDDMNRLLDRV-PE 530
GKTNR++ F ++ +++ + PE
Sbjct: 426 GKTNRSQVTFERELLGIIESLEPE 449
>sp|Q2JXK6|CCS1_SYNJA Cytochrome c biogenesis protein CcsB OS=Synechococcus sp. (strain
JA-3-3Ab) GN=ccsB PE=3 SV=1
Length = 478
Score = 341 bits (874), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 178/427 (41%), Positives = 258/427 (60%), Gaps = 18/427 (4%)
Query: 110 AIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIF 169
AIG AIA L A+GT IEQ E FY YPE +FGF TWR IL LG DH++ + F
Sbjct: 33 AIGLFLAIALLSAVGTVIEQEETVAFYQAHYPEHPALFGFLTWRLILKLGLDHVYRTSWF 92
Query: 170 LGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILM 229
L LL++ G SL AC+ T Q P++KVARRWS+L + ++ F LP+ S+Q L L
Sbjct: 93 LALLILFGSSLAACSLTRQWPMLKVARRWSYLTRPHSFQRLPFWTYLPQRSLQGLPQRLR 152
Query: 230 GAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFV 289
GY VF G LYA KGL+GRF PI VH+++LLI+ G + F+ +P G
Sbjct: 153 QRGYAVFQDGSRLYARKGLIGRFGPILVHVSLLLILLGAIWGSLAGFKAQALIPSGSVAA 212
Query: 290 VGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTIS 349
+ V G PT ++ VN+F++DY G VKQF+SDLS+ D GG+EV R+TIS
Sbjct: 213 IEQVTGAGDLAHLPT----WQIRVNRFWIDYAPDGRVKQFYSDLSILD-GGQEVKRQTIS 267
Query: 350 VNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSP 409
VN PL Y G+T+YQ DWS ++++ N+ PF + + P+ KL+G F+P P
Sbjct: 268 VNHPLSYRGVTLYQADWSIDSIRIRLNNSPPFQIPVVPVPTQAGSKLWGAFVP----TRP 323
Query: 410 NV-KGISMLARDLQ-SIVIYDQEGKFTGVRRPNSKLPIDI-------DGTKIVIVDAIGS 460
++ +G+++L DLQ + ++YD +G++ G R L +D + + + + IG+
Sbjct: 324 DLSEGLTLLLPDLQGTALLYDTQGQWIGSLRQGMSLALDEVAPQRFPNRLTLHLDEVIGA 383
Query: 461 TGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVIIGGKTNRAKAEFPDD 520
TGL +K+DPG+P+VY GFG LML +S+ S++Q+WAL+ + +GGKTNRA F +
Sbjct: 384 TGLQIKSDPGIPLVYLGFGLLMLGVAMSYFSYSQVWALETEAGLYLGGKTNRALVSFERE 443
Query: 521 MNRLLDR 527
RL+++
Sbjct: 444 FARLVEQ 450
>sp|Q118K5|CCS1_TRIEI Cytochrome c biogenesis protein CcsB OS=Trichodesmium erythraeum
(strain IMS101) GN=ccsB PE=3 SV=1
Length = 472
Score = 338 bits (867), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 189/460 (41%), Positives = 274/460 (59%), Gaps = 9/460 (1%)
Query: 82 EVESKNGVIGLVKRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYP 141
E KN +I ++ R +L L++L LAI + IA GT IEQGE FY + YP
Sbjct: 4 EDSDKNSLINPLRIFKREILPLLADLRLAIALLLIIAICSISGTVIEQGESIAFYQENYP 63
Query: 142 EDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFL 201
E +FGF TW+ IL L DH++ + FL +L++ G SL ACT+T Q+P +K A RW F
Sbjct: 64 EKPALFGFLTWKVILLLELDHVYRTWWFLSILILFGASLTACTFTRQLPALKSANRWKFY 123
Query: 202 HSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAM 261
+ + + S + AS+ L IL GY+ +G LY KG++G+ PI VH +M
Sbjct: 124 NKKQQFKNLALSAEIETASLDSLEEILQKRGYKTSKEGDKLYGRKGIIGKVGPIIVHASM 183
Query: 262 LLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYY 321
L+I+AG + + F G VP G F V +++ G + + V VN+F++DY
Sbjct: 184 LIILAGSIIGSMTGFLGQEIVPSGETFQVKNIIDA-GIFAKSQIPKNWSVRVNRFWIDYT 242
Query: 322 DSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPF 381
SG + QF+SDLS+ D G+EV RKTI VN P+RY G+T+YQ DW+ +A++V N F
Sbjct: 243 PSGGIDQFYSDLSILDKSGEEVDRKTIFVNQPMRYHGVTMYQADWAIAAVKVRVNKSPVF 302
Query: 382 NLAMAPLKVNGDKKLFGTFLPLGDVNSPNV-KGISMLARDLQ-SIVIYDQEGKFTGVRRP 439
L MA L G K++GT++P+ P++ +G+S+LA+DLQ ++++YD GK R
Sbjct: 303 RLPMAQLNTEGGGKIWGTWVPI----KPDLSEGVSLLAKDLQGNVLVYDTSGKLVASVRE 358
Query: 440 NSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQ 499
+ I++ G + I IGSTGL +K DPG+PIVY GFG LML+ +S++SH+QIWA Q
Sbjct: 359 G--MFIEVSGVTLFIDKIIGSTGLQIKADPGIPIVYLGFGLLMLSVLMSYVSHSQIWAFQ 416
Query: 500 DGTSVIIGGKTNRAKAEFPDDMNRLLDRVPELVESSLSKQ 539
+ + IGGKTNRA F ++ +LDR+ SL KQ
Sbjct: 417 ESERLYIGGKTNRANVTFEREILDILDRLGSDENISLEKQ 456
>sp|Q3M6F7|CCS1_ANAVT Cytochrome c biogenesis protein CcsB OS=Anabaena variabilis (strain
ATCC 29413 / PCC 7937) GN=ccsB PE=3 SV=1
Length = 461
Score = 335 bits (858), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 188/452 (41%), Positives = 264/452 (58%), Gaps = 14/452 (3%)
Query: 94 KRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWR 153
K L R L L++L LAI + IA GT IEQG+ P FY YPE +FGF TW+
Sbjct: 19 KFLRREFLPVLTDLRLAIALLLIIALFSISGTVIEQGQSPAFYQANYPEHPALFGFLTWK 78
Query: 154 WILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFS 213
I +G DH++ + FL LLV+ G SL ACT+T Q+P +K A+RW + +K S
Sbjct: 79 VIQVVGLDHVYRTWWFLSLLVLFGTSLTACTFTRQLPALKTAQRWKYYEEPRQFQKLALS 138
Query: 214 DTLPRASIQDLGVILMGAGYEVFL-KGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSA 272
L S+ L IL Y++F K LYA KG+VGR PI VH+ ++ I+ G A
Sbjct: 139 AELDAGSVNSLSQILQNRRYKIFQEKDDILYARKGIVGRIGPIIVHIGIVTILLGSIWGA 198
Query: 273 TGSFRGSVTVPQGLNFVVGDVL--GPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFH 330
F VP G F V +++ GP P D V VN+F++DY G + QF+
Sbjct: 199 MTGFIAQEMVPSGETFQVKNIIDAGPLAAGQFPQDW---SVRVNRFWIDYTPKGGIDQFY 255
Query: 331 SDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKV 390
SD+S+ D GKEV K I VN PLRY G+T YQTDW S ++V N F L MA L
Sbjct: 256 SDMSVLDNQGKEVDHKKIFVNQPLRYHGVTFYQTDWGISGVRVRLNKSPIFQLPMALLNT 315
Query: 391 NGDKKLFGTFLPLGDVNSPNV-KGISMLARDLQSIV-IYDQEGKFTGVRRPNSKLPIDID 448
NG +++GT++P P++ +G+S+LA+DLQ +V IYD +GK R + + ++
Sbjct: 316 NGQGRIWGTWIP----TKPDLSEGVSLLAKDLQGMVLIYDAQGKLVDTVR--AGMSTQVN 369
Query: 449 GTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVIIGG 508
G + ++D +GSTGL +K DPG+PIVY GFG LML +S+ SH+QIWALQ G + +GG
Sbjct: 370 GVTLKVLDVVGSTGLQIKADPGIPIVYTGFGILMLGVVMSYFSHSQIWALQKGDRLYVGG 429
Query: 509 KTNRAKAEFPDDMNRLLDRVPELVESSLSKQS 540
KTNRA+ F ++ +L+R+ ++ ++QS
Sbjct: 430 KTNRAQVAFEQEVLEILERLSSQSATASNQQS 461
>sp|Q9R6Y2|CCS1_NOSS1 Cytochrome c biogenesis protein CcsB OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=ccsB PE=3 SV=1
Length = 461
Score = 333 bits (853), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 187/452 (41%), Positives = 264/452 (58%), Gaps = 14/452 (3%)
Query: 94 KRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWR 153
K L R L L++L LAI + IA GT IEQG+ P FY YPE +FGF TW+
Sbjct: 19 KFLRREFLPVLTDLRLAIALLLIIALFSISGTVIEQGQSPAFYQSNYPEHPALFGFLTWK 78
Query: 154 WILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFS 213
I +G DH++ + FL LLV+ G SL ACT+T Q+P +K A+RW + +K S
Sbjct: 79 VIQVVGLDHVYRTWWFLSLLVLFGTSLTACTFTRQLPALKTAQRWKYYEEPRQFQKLALS 138
Query: 214 DTLPRASIQDLGVILMGAGYEVFL-KGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSA 272
L S+ L IL Y++F K LYA KG+VGR PI VH+ ++ I+ G A
Sbjct: 139 AELDAGSVNSLSQILQNRRYKIFQEKDDILYARKGIVGRIGPIIVHIGIVTILLGSIWGA 198
Query: 273 TGSFRGSVTVPQGLNFVVGDVL--GPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFH 330
F VP G F V +++ GP P D V VN+F++DY G + QF+
Sbjct: 199 MTGFIAQEMVPSGETFQVKNIIDAGPLAAGQFPQDW---SVRVNRFWIDYTPKGGIDQFY 255
Query: 331 SDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKV 390
SD+S+ D G+EV K I VN PLRY G+T YQTDW S ++V N F L MA L
Sbjct: 256 SDMSVLDNQGQEVDHKKIFVNQPLRYHGVTFYQTDWGISGVRVRLNKSPIFQLPMALLNT 315
Query: 391 NGDKKLFGTFLPLGDVNSPNV-KGISMLARDLQSIV-IYDQEGKFTGVRRPNSKLPIDID 448
NG +++GT++P P++ +G+S+LA+DLQ +V IYD +GK R + + ++
Sbjct: 316 NGQGRIWGTWIP----TKPDLSEGVSLLAKDLQGMVLIYDAQGKLVDTVR--AGMSTQVN 369
Query: 449 GTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVIIGG 508
G + ++D +GSTGL +K DPG+PIVY GFG LML +S+ SH+QIWALQ G + +GG
Sbjct: 370 GVTLKVLDVVGSTGLQIKADPGIPIVYTGFGILMLGVVMSYFSHSQIWALQKGDRLYVGG 429
Query: 509 KTNRAKAEFPDDMNRLLDRVPELVESSLSKQS 540
KTNRA+ F ++ +L+R+ + +++QS
Sbjct: 430 KTNRAQVAFEQEVLDILERLNSQSATVINQQS 461
>sp|Q2JNP5|CCS1_SYNJB Cytochrome c biogenesis protein CcsB OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=ccsB PE=3 SV=1
Length = 469
Score = 333 bits (853), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 178/438 (40%), Positives = 264/438 (60%), Gaps = 18/438 (4%)
Query: 110 AIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIF 169
AIG + AIA L A GT IEQ E FY YPE +FGF TWR IL+LG DH++ +P F
Sbjct: 33 AIGLLLAIAVLSATGTVIEQEETAAFYQAHYPEHPALFGFLTWRVILSLGLDHVYRTPWF 92
Query: 170 LGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILM 229
L +L++ G SL AC+ T Q P++K ARRWS+L ++ ++ F LP+ S+Q L L
Sbjct: 93 LAILILFGSSLAACSLTRQWPMLKRARRWSYLTRPQSFQRLPFRTYLPQQSLQGLPQQLR 152
Query: 230 GAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFV 289
GY VF +G LYA KGL+GR PI VH++MLLI+ G + F+ +P G
Sbjct: 153 RQGYLVFQEGHYLYARKGLIGRIGPILVHVSMLLILLGAIWGSISGFKAQELIPSGGVAS 212
Query: 290 VGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTIS 349
+ + G + ++ N+F++DY G VKQF+SDLS+ D G+EV R+TIS
Sbjct: 213 IQHLTGAGDLARAHLPTW--QIRANRFWIDYAADGRVKQFYSDLSILD-QGQEVKRQTIS 269
Query: 350 VNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSP 409
VN PL Y G+T+YQ DWS ++++ N+ F + + P++ KL+G F+P P
Sbjct: 270 VNHPLSYRGVTLYQADWSIDSIRIRINNSPTFQIPVVPVRTEAGNKLWGAFVP----TQP 325
Query: 410 NV-KGISMLARDLQ-SIVIYDQEGKFTGVRRPNSKLPIDIDGTK-------IVIVDAIGS 460
++ +G+++L DLQ + ++YD EG++ G R L +D + + + + IG+
Sbjct: 326 DMSQGLTLLLPDLQGTALLYDTEGQWMGSLRQGMSLALDEVAPQRFPNPLTLYLDEVIGA 385
Query: 461 TGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVIIGGKTNRAKAEFPDD 520
TGL +K+DPG+P VY GFG LM+ +S+ S++QIWALQ T + +GGKTNRA F +
Sbjct: 386 TGLQIKSDPGIPAVYLGFGLLMVGVVMSYFSYSQIWALQTETGLYLGGKTNRALVTFERE 445
Query: 521 MNRLLDRVPELVESSLSK 538
+RL+++ + V SLS+
Sbjct: 446 FDRLVEQ--QKVAFSLSQ 461
>sp|B0JHI7|CCS1_MICAN Cytochrome c biogenesis protein CcsB OS=Microcystis aeruginosa
(strain NIES-843) GN=ccsB PE=3 SV=1
Length = 447
Score = 332 bits (851), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 171/408 (41%), Positives = 248/408 (60%), Gaps = 11/408 (2%)
Query: 124 GTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMAC 183
GT IEQG+ FY YPE +FGF TW+ +L LG +H++S+ +L LL++ G SL AC
Sbjct: 45 GTVIEQGQSLSFYQANYPEKPALFGFLTWKVLLLLGLNHVYSTWWYLSLLILFGSSLTAC 104
Query: 184 TYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLY 243
T+ Q+P +K AR W F + +K S L S++ L +L GY+VFL+ SLY
Sbjct: 105 TFRRQLPALKAARNWQFYQQSRQFQKLALSAELETGSLESLTPLLEKKGYKVFLENNSLY 164
Query: 244 AFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVL--GPNGFLS 301
A KGL+G+ PI VH AML+I+AG A F V G +F V +++ GP S
Sbjct: 165 ARKGLIGKIGPIIVHAAMLIILAGAIWGALTGFFAQEMVASGDSFQVKNIIEAGPLSKNS 224
Query: 302 TPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITI 361
P D + VN+F++DY G+++QF+SDLS+ D G+E+ RKTI VN PL + G+T
Sbjct: 225 LPKDW---GIKVNRFWIDYSPKGDIEQFYSDLSVIDNQGQEIDRKTIQVNQPLHHKGVTF 281
Query: 362 YQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGISMLARDL 421
YQT W + ++V N+ L MA L G+ +++GT++P + +G+S+L RDL
Sbjct: 282 YQTSWGIAGVKVQVNNSPILQLPMASLDTKGNGQIWGTWIP---TKTDLSEGVSLLTRDL 338
Query: 422 Q-SIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGA 480
Q ++++YD +G T R +P I+G + IV+ +GSTGL +K DPGVPIVY GF
Sbjct: 339 QGTVIVYDAQGDLTSAVREGMTIP--INGVNLKIVELVGSTGLQIKADPGVPIVYLGFAL 396
Query: 481 LMLTTCISFLSHTQIWALQDGTSVIIGGKTNRAKAEFPDDMNRLLDRV 528
LM+ +S+ SH+QIWALQ G IGGKTNRA+ F ++ ++R+
Sbjct: 397 LMMGVVMSYFSHSQIWALQSGDRFYIGGKTNRAQVSFEREIIDTIERL 444
>sp|O68616|CCS1_SYNP2 Cytochrome c biogenesis protein CcsB OS=Synechococcus sp. (strain
ATCC 27264 / PCC 7002 / PR-6) GN=ccsB PE=3 SV=1
Length = 462
Score = 328 bits (842), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 174/437 (39%), Positives = 262/437 (59%), Gaps = 15/437 (3%)
Query: 96 LPRRV----LAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFT 151
PR+V L +++L +AI + I+ LGT IEQG FY + YPED + GF +
Sbjct: 15 FPRKVWRTGLKWIADLRVAIALLLLISVFSILGTVIEQGSTIQFYQENYPEDPALLGFLS 74
Query: 152 WRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQE 211
W+ +L LG DH++++ +L LL+ G+SL+ACT+ Q+P +K AR W++ A K
Sbjct: 75 WKVLLGLGLDHVYTTWWYLVLLLAFGVSLIACTFRRQLPALKTARNWNYYSQARQFNKLA 134
Query: 212 FSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLS 271
S L S+Q L L Y++F G LYA KG+VGR PI VH+ M++ + G
Sbjct: 135 LSTELDHGSLQSLKPQLEKKRYKIFQDGEKLYARKGIVGRIGPIIVHIGMIVTLVGSIWG 194
Query: 272 ATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHS 331
A G F +P G+NF V +V G S +S V+VN+F++DY +G++ QF+S
Sbjct: 195 AFGGFMAQEMIPSGVNFKVNNVF-KAGIFSESDRPWS--VNVNRFWIDYTPTGDIDQFYS 251
Query: 332 DLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVN 391
DLS+ D G+E+ RKTISVN PLRY GIT YQT WS +QV N+ F L A +
Sbjct: 252 DLSVVDGEGQELERKTISVNHPLRYDGITFYQTSWSIGGVQVQLNNSPIFQLPAAQIPTE 311
Query: 392 GDKKLFGTFLPLGDVNSPNVK-GISMLARDLQ-SIVIYDQEGKFTGVRRPNSKLPIDIDG 449
KL+G+++P+ P++ G+S+L +DLQ S ++Y+++G+ G R +L D+
Sbjct: 312 NGAKLWGSWVPI----KPDMSAGVSILMQDLQGSAIVYNEQGELVGAVRVGDRL--DVGD 365
Query: 450 TKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVIIGGK 509
+ +VD +GSTGL +K DPGVP+VY GF +ML +S++S++Q+WAL G +GGK
Sbjct: 366 ISLKLVDLVGSTGLQIKADPGVPVVYTGFLLVMLGVVMSYVSYSQVWALAAGDRFYLGGK 425
Query: 510 TNRAKAEFPDDMNRLLD 526
TNRA+ F ++ +++
Sbjct: 426 TNRAQVAFERELLEIIN 442
>sp|B2J814|CCS1_NOSP7 Cytochrome c biogenesis protein CcsB OS=Nostoc punctiforme (strain
ATCC 29133 / PCC 73102) GN=ccsB PE=3 SV=1
Length = 465
Score = 328 bits (841), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 181/438 (41%), Positives = 262/438 (59%), Gaps = 13/438 (2%)
Query: 96 LPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWI 155
L + +L L+NL LAI + IA + GT IEQG+ P FY YPE +FGF TW+ I
Sbjct: 21 LRQELLPVLTNLRLAIALLLLIAIFSSTGTVIEQGQSPAFYQANYPEHPALFGFLTWKVI 80
Query: 156 LTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDT 215
+G DH++ + FL LL++ G SL AC++T Q+P +K A+RW + +K S
Sbjct: 81 QVVGLDHVYRTWWFLALLILFGTSLTACSFTRQLPALKAAQRWKYYEEPRQFQKLALSAE 140
Query: 216 LPRASIQDLGVILMGAGYEVF---LKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSA 272
L S+ L +L Y++F K LYA KG+VGR PI VH+ ++ I+ GG A
Sbjct: 141 LDNGSLNSLSQLLQKRRYKIFPDREKENILYARKGIVGRIGPIIVHIGIVAILLGGIWGA 200
Query: 273 TGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSD 332
F V G F V +++ + + +S V VN+F++DY SG + QF+SD
Sbjct: 201 MTGFMAQEMVASGDTFQVTNIVDAGPLAAQVSKDWS--VRVNRFWIDYTPSGGIDQFYSD 258
Query: 333 LSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNG 392
+S+ + G+EV K I VN+PLRY GIT YQTDW + ++V N+ F L MA L G
Sbjct: 259 MSVLNKQGEEVDHKKIFVNEPLRYRGITFYQTDWGIAGVRVQFNNSPIFQLPMALLNTKG 318
Query: 393 DKKLFGTFLPLGDVNSPNV-KGISMLARDLQSIV-IYDQEGKFTGVRRPNSKLPIDIDGT 450
+++GT++P P++ +G+S+LA+DLQ +V IYD GK R + + ++G
Sbjct: 319 QGRIWGTWVP----TKPDLSEGVSLLAKDLQGMVLIYDPNGKLVDTVR--AGMSTQVNGV 372
Query: 451 KIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVIIGGKT 510
K+ I+D IGSTGL +K DPG+PIVY+GFG LML +S+ SH+QIWALQ G + +GGKT
Sbjct: 373 KLKILDVIGSTGLQIKADPGIPIVYSGFGLLMLGVVMSYFSHSQIWALQKGDLLYVGGKT 432
Query: 511 NRAKAEFPDDMNRLLDRV 528
NRA+ F ++ +LDR+
Sbjct: 433 NRAQVAFEQEVLEILDRL 450
>sp|Q8DL16|CCS1_THEEB Cytochrome c biogenesis protein CcsB OS=Thermosynechococcus
elongatus (strain BP-1) GN=ccsB PE=3 SV=1
Length = 442
Score = 321 bits (822), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 177/426 (41%), Positives = 255/426 (59%), Gaps = 11/426 (2%)
Query: 98 RRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILT 157
RRVLA L +L LAI + IA GT IEQG+ FY YPE+ +FGF +WR +L
Sbjct: 8 RRVLALLGDLRLAILLLLVIAIASMAGTVIEQGQSLSFYQANYPENPALFGFLSWRVLLA 67
Query: 158 LGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLP 217
LG DH++ +P +L LLV+ G SL ACT T Q+P + A+RW + K S T+P
Sbjct: 68 LGLDHVYRTPWYLTLLVLFGASLTACTLTRQVPALTTAQRWHYYQEPRQFTKLALSTTIP 127
Query: 218 RASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFR 277
+ S+ L L GY V+ LYA KGLVGR PI VH +MLLI+ GG L A F
Sbjct: 128 QGSLTALATALRAKGYRVWQTDTQLYARKGLVGRLGPIVVHASMLLILLGGILGALTGFM 187
Query: 278 GSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFD 337
+P G + ++ P D V VN+F++DY D+GE+ QF+SDLS+ D
Sbjct: 188 AQELIPSGETVHLQHIVEAGPLARIPQD---WSVKVNRFWIDYTDAGEIDQFYSDLSIQD 244
Query: 338 IGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLF 397
G+EV R TI VN PLRYGG+++YQ DW +A++ N L MAPL G +L+
Sbjct: 245 AKGQEVKRGTIHVNRPLRYGGVSLYQADWGIAAIRFRLNRSPVLQLPMAPLDTGGKGRLW 304
Query: 398 GTFLPLGDVNSPNVK-GISMLARDLQ-SIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIV 455
GT+LP P++ G+S++ARDLQ ++++Y +G+F R + + +++G + +V
Sbjct: 305 GTWLP----TRPDLSAGVSLIARDLQGTVLLYGPKGEFLTSLR--TGMSTEVNGVTLTLV 358
Query: 456 DAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVIIGGKTNRAKA 515
+ +GSTGL +K DPG+P+ YAGF LM +S++SH+Q+W LQ+ + +GG+TNRA+
Sbjct: 359 ELVGSTGLQIKADPGIPLFYAGFALLMAGVIMSYVSHSQVWGLQENQRLYLGGRTNRAQL 418
Query: 516 EFPDDM 521
F ++
Sbjct: 419 AFEQEL 424
>sp|Q9R6T0|CCS1_SYNP6 Cytochrome c biogenesis protein CcsB OS=Synechococcus sp. (strain
ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ccsB PE=3 SV=1
Length = 456
Score = 319 bits (817), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 166/409 (40%), Positives = 243/409 (59%), Gaps = 15/409 (3%)
Query: 124 GTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMAC 183
GT IEQG+ FY + YP D +FGF +WRWIL+LG DH++ + FLGLL++ G SL AC
Sbjct: 46 GTVIEQGQSLAFYQENYPTDPALFGFLSWRWILSLGLDHVYRAGWFLGLLILFGASLTAC 105
Query: 184 TYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLY 243
T+ Q P ++ A+RW F K S +LP+ + L +L+ Y +F LY
Sbjct: 106 TFRRQWPALRAAQRWQFYQEPRQFTKLALSASLPQGKLDSLEPLLLQRRYRLFRADDVLY 165
Query: 244 AFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVL--GPNGFLS 301
A +GL GR PI VH ML+++ G + G F +P G F V +++ GP
Sbjct: 166 ARRGLAGRVGPILVHAGMLVVLGGAIWGSLGGFYAQEMIPSGETFQVRNIVDAGPWSGSR 225
Query: 302 TPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITI 361
P D V VN+F++DY G + QF+SDLS+ D G+E R+TI VN PLRYGG+T
Sbjct: 226 IPQD---WAVKVNRFWIDYAPDGRIDQFYSDLSVVDREGQEQDRQTIHVNQPLRYGGLTF 282
Query: 362 YQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNV-KGISMLARD 420
YQ DW+ +A QV N+ L MA L G +++GTF+P P++ G+S++A+D
Sbjct: 283 YQADWAIAAAQVRLNNSPVLQLPMAQLPAAG--RIWGTFVP----TKPDLSSGVSLIAKD 336
Query: 421 LQ-SIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFG 479
LQ + VIY G+ G R + I+++G ++ +VD +GSTGL +K+DPG+P VYAGF
Sbjct: 337 LQGTAVIYGSNGEPLGTLRKG--MAIEVEGIRLSLVDLVGSTGLQIKSDPGIPWVYAGFL 394
Query: 480 ALMLTTCISFLSHTQIWALQDGTSVIIGGKTNRAKAEFPDDMNRLLDRV 528
+M+ S++SH Q+WAL+ + IGG++NRA F +M +L ++
Sbjct: 395 FVMVGVVCSYVSHAQVWALEQDGQLYIGGRSNRALVAFEQEMLAVLAQL 443
>sp|Q31RG5|CCS1_SYNE7 Cytochrome c biogenesis protein CcsB OS=Synechococcus elongatus
(strain PCC 7942) GN=ccsB PE=3 SV=1
Length = 456
Score = 319 bits (817), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 166/409 (40%), Positives = 243/409 (59%), Gaps = 15/409 (3%)
Query: 124 GTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMAC 183
GT IEQG+ FY + YP D +FGF +WRWIL+LG DH++ + FLGLL++ G SL AC
Sbjct: 46 GTVIEQGQSLAFYQENYPTDPALFGFLSWRWILSLGLDHVYRAGWFLGLLILFGASLTAC 105
Query: 184 TYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLY 243
T+ Q P ++ A+RW F K S +LP+ + L +L+ Y +F LY
Sbjct: 106 TFRRQWPALRAAQRWQFYQEPRQFTKLALSASLPQGKLDSLEPLLLQRRYRLFRADDVLY 165
Query: 244 AFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVL--GPNGFLS 301
A +GL GR PI VH ML+++ G + G F +P G F V +++ GP
Sbjct: 166 ARRGLAGRVGPILVHAGMLVVLGGAIWGSLGGFYAQEMIPSGETFQVRNIVDAGPWSGSR 225
Query: 302 TPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITI 361
P D V VN+F++DY G + QF+SDLS+ D G+E R+TI VN PLRYGG+T
Sbjct: 226 IPQD---WAVKVNRFWIDYAPDGRIDQFYSDLSVVDREGQEQDRQTIHVNQPLRYGGLTF 282
Query: 362 YQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNV-KGISMLARD 420
YQ DW+ +A QV N+ L MA L G +++GTF+P P++ G+S++A+D
Sbjct: 283 YQADWAIAAAQVRLNNSPVLQLPMAQLPAAG--RIWGTFVP----TKPDLSSGVSLIAKD 336
Query: 421 LQ-SIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFG 479
LQ + VIY G+ G R + I+++G ++ +VD +GSTGL +K+DPG+P VYAGF
Sbjct: 337 LQGTAVIYGSNGEPLGTLRKG--MAIEVEGIRLSLVDLVGSTGLQIKSDPGIPWVYAGFL 394
Query: 480 ALMLTTCISFLSHTQIWALQDGTSVIIGGKTNRAKAEFPDDMNRLLDRV 528
+M+ S++SH Q+WAL+ + IGG++NRA F +M +L ++
Sbjct: 395 FVMVGVVCSYVSHAQVWALEQDGQLYIGGRSNRALVAFEQEMLAVLAQL 443
>sp|P73912|CCS1_SYNY3 Cytochrome c biogenesis protein CcsB OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ccsB PE=1 SV=1
Length = 458
Score = 317 bits (812), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 165/405 (40%), Positives = 245/405 (60%), Gaps = 15/405 (3%)
Query: 124 GTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMAC 183
GT IEQGE FY Q YPED +FGF +W+ IL LG + ++ + FLGLL++ G SL AC
Sbjct: 43 GTVIEQGESLSFYQQNYPEDPALFGFLSWQVILQLGLNQVYRTWWFLGLLILFGSSLTAC 102
Query: 184 TYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLY 243
T+ Q P +K AR W F H +K S +LP I + +L GY++F +G S+Y
Sbjct: 103 TFNRQFPALKAARSWQFYHQPRQFKKLALSFSLPDGDINKIESLLRDRGYKIFQEGDSVY 162
Query: 244 AFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVL--GPNGFLS 301
A KGL+G+ PI VH AML+I+ G A F +P G F V +++ GP
Sbjct: 163 ARKGLMGKVGPIIVHGAMLIILGGAIWGALTGFFAQHMIPSGETFQVSNIIEKGPLADSQ 222
Query: 302 TPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITI 361
P D + VN+F+++Y ++G + QF+SDLS+ + G+E+ R+TISVN PLR+ G+T
Sbjct: 223 IPKD---WGIKVNRFWINYTENGAIDQFYSDLSVVNNQGEELDRQTISVNHPLRHRGVTF 279
Query: 362 YQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGISMLARDL 421
YQT+W + ++V N+ L MAPL+ +L+G ++P + +G ++L +DL
Sbjct: 280 YQTNWGIAGVKVQLNNSPVLQLPMAPLQTANGGQLWGAYIP---TKTDFSEGAALLVKDL 336
Query: 422 Q-SIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGA 480
Q +++IYDQEG T R S ++I+G I I + +GSTGL +K DPG+P VY GFG
Sbjct: 337 QGTMIIYDQEGNLTDAVRAGST--VEINGVNITIKELVGSTGLQIKADPGIPFVYLGFGL 394
Query: 481 LMLTTCISFLSHTQIWALQ---DGT-SVIIGGKTNRAKAEFPDDM 521
LM+ +S++SH+Q+W L DG + +GG+TNRA+ F ++
Sbjct: 395 LMVGVMMSYVSHSQVWLLSVDGDGQREIYLGGRTNRAQVAFEREI 439
>sp|B0CDA5|CCS1_ACAM1 Cytochrome c biogenesis protein CcsB OS=Acaryochloris marina
(strain MBIC 11017) GN=ccsB PE=3 SV=1
Length = 456
Score = 305 bits (782), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 167/444 (37%), Positives = 258/444 (58%), Gaps = 21/444 (4%)
Query: 98 RRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILT 157
+ ++ L++L LAI + AIA GT IEQG+ +FY YPE+ +FGF TW+ ++T
Sbjct: 14 KTLVPVLADLRLAIVLLLAIALFSISGTVIEQGQSLEFYQANYPEEPALFGFLTWKVLVT 73
Query: 158 LGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLP 217
+G DH++++ FL LL++ G SL ACT+ Q+P +K AR W F K S TL
Sbjct: 74 IGLDHVYATWWFLSLLILFGTSLTACTFMRQLPALKAARSWQFYKKPRQFGKLALSTTLD 133
Query: 218 RASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFR 277
L L Y+VF + S+YA KG+ GR PI VH +M+LI+ G + F
Sbjct: 134 PDQKPSLLKALEKNRYKVFEEDQSIYARKGITGRIGPIIVHASMILILLGSIWGSLTGFM 193
Query: 278 GSVTVPQGLNFVVGDVL--GPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSL 335
+P G V +++ GP P D V VN+F++DY G++ QF+SDLS+
Sbjct: 194 AQEMIPSGTTAKVSNIVKSGPWSGAQIPRDW---AVQVNRFWIDYTPEGQIDQFYSDLSI 250
Query: 336 FDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKK 395
D E+ R+TI VN PL++ G+T+YQ DWS + ++V N+ L MAPL+ G +
Sbjct: 251 VDEDKNELDRQTIHVNQPLKHKGVTLYQADWSIAGVRVQLNNSPVLQLPMAPLEAAGG-R 309
Query: 396 LFGTFLPLGDVNSPNVK-GISMLARDLQ-SIVIYDQEGKFTGVRRPNSKLPIDIDGTKIV 453
++GT++P P++ G+++L DLQ ++V+YD+ GK R + + D++ +
Sbjct: 310 IWGTWVP----TKPDLSAGVTLLTTDLQGTVVVYDESGKLVSTVR--TGMSTDVNDISLK 363
Query: 454 IVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVIIGGKTNRA 513
+V+ +GSTGL +K+DPG+P +YAGFG LM+ +S++SH+QIW L + +GG+TNRA
Sbjct: 364 LVELVGSTGLQIKSDPGIPWIYAGFGLLMIGVIMSYVSHSQIWLLTADDQLYVGGRTNRA 423
Query: 514 KAEFPDDMNRLLDRVPELVESSLS 537
F ++ E++ESS S
Sbjct: 424 LLTFERELV-------EMIESSAS 440
>sp|Q7NJ11|CCS1_GLOVI Cytochrome c biogenesis protein CcsB OS=Gloeobacter violaceus
(strain PCC 7421) GN=ccsB PE=3 SV=1
Length = 474
Score = 282 bits (721), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 167/461 (36%), Positives = 251/461 (54%), Gaps = 17/461 (3%)
Query: 92 LVKRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPV-FGFF 150
L + + V A L +L LAIG AIAA GT I QGE DFY Q YP+ V +GF
Sbjct: 21 LWRDIRHEVAAWLGSLKLAIGLFLAIAAASIAGTVIPQGESTDFYRQNYPDSGAVVWGFV 80
Query: 151 TWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQ 210
TWR+I++LG D ++ S F+ LL+++ SL CT+ QIP++K A+ W F + K
Sbjct: 81 TWRFIISLGLDEVYRSWWFVALLLLLATSLTICTFRRQIPMLKAAQNWKFYTEPRQLSKY 140
Query: 211 EFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTL 270
+P L L Y+V+ + +YA KG +GR PI VH+++LLIMAG +
Sbjct: 141 ALRTAIPARGTGPLAEQLRAGRYKVYQRDDLIYATKGTIGRVGPIVVHVSLLLIMAGAMI 200
Query: 271 SATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFH 330
A G ++ G +F + V L+ P D V VNKF++DY G V QFH
Sbjct: 201 GAFGGYQTQRMTLAGDSFDIQQVEQSRLSLARPPD---WTVRVNKFWIDYRPDGSVDQFH 257
Query: 331 SDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKV 390
SDLS+ GKE+ RKTISVNDPL Y G+T+YQ W+ A ++ ND + M P++
Sbjct: 258 SDLSVVSPAGKELERKTISVNDPLIYDGVTMYQASWAVGAFKLRLNDSPVLTIPMQPIEA 317
Query: 391 NGDKKLFGTFLPLGDVNSPNVKGISMLARDLQSIVIYDQEGKFTG--VRRPNSKL----P 444
++ +G +P + + M+ R LQ ++ TG VR + P
Sbjct: 318 PNGQEAWGQAIPF---DKDGRVALQMVTRGLQGSLMLLPFNPRTGETVREAATPARVGKP 374
Query: 445 IDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSV 504
+ + G ++VI + +G TG+ +K DPG+P+VYAGF LM+ +S+LSH+Q+WA+ +
Sbjct: 375 VSVLGQRLVIEELVGQTGIQIKADPGIPVVYAGFALLMVGLAMSYLSHSQVWAIYRDGQL 434
Query: 505 IIGGKTNRAKAEFPDDMNRLLDRVPELVESSLSKQSDGISG 545
+ G+TNRA+ F ++ R++ V++ + SD +S
Sbjct: 435 HVAGRTNRAQIGFERELVRMV----AAVQTPRPRTSDALSA 471
>sp|P49539|CCS1_ODOSI Cytochrome c biogenesis protein ccs1 OS=Odontella sinensis GN=ccs1
PE=3 SV=2
Length = 421
Score = 273 bits (698), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 151/431 (35%), Positives = 234/431 (54%), Gaps = 12/431 (2%)
Query: 96 LPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWI 155
+ + VL L++L AI + IA+ +GT IEQ + + Y YP N +FGF +W I
Sbjct: 1 MKQSVLRFLADLRFAISILLIIASCSVIGTVIEQDQSIEIYKLNYPLTNRIFGFLSWDII 60
Query: 156 LTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDT 215
L G DH++ + FLG + + GLSL CT Q P +K+ARR F + + + S
Sbjct: 61 LKFGLDHVYKTWWFLGFIALFGLSLFTCTILQQFPSLKIARRCQFFRTTQQFGLLKLSRN 120
Query: 216 LPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGS 275
L S+ L + Y +F + +Y +KGL+GR API VH +M+LI+ G A
Sbjct: 121 LGNLSLSQLLFRIKKNQYSIFQQKNIVYCYKGLIGRIAPIIVHFSMILILIGAIFGALNG 180
Query: 276 FRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSL 335
F+ +P+ F V ++L NG L+ S VN F++ Y V QF+SD+S+
Sbjct: 181 FKAQELIPKTEAFHVQNILS-NGQLTRIPKVVS---RVNDFWITYTKQATVAQFYSDVSI 236
Query: 336 FDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKK 395
+ G E++RKTI VN P++Y I YQTDW+ L+V + + L N K
Sbjct: 237 LNTEGNEIVRKTIFVNSPIKYNNIDFYQTDWNVIGLRVQNDTSSILQYPLINL-TNAGNK 295
Query: 396 LFGTFLPLGDVNSPNVKGISMLARDLQSIV-IYDQEGKFTGVRRPNSKLPIDIDGTKIVI 454
++ T++P +S KG+++L +LQ IYD+ G F G N +++ I +
Sbjct: 296 VWVTWIP---SDSEFKKGLTILVDNLQGYCSIYDESGIFVGNLELNETFNLNM---PITL 349
Query: 455 VDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVIIGGKTNRAK 514
VD + STGL +KTDPG+ ++Y GF LML+T IS+++++QIW +Q + +GG T RA
Sbjct: 350 VDILSSTGLQIKTDPGILLIYTGFLFLMLSTLISYITYSQIWIIQTNRQIFVGGNTTRAT 409
Query: 515 AEFPDDMNRLL 525
+F + +L+
Sbjct: 410 FDFEIEFLKLI 420
>sp|A6MVS2|CCS1_RHDSA Cytochrome c biogenesis protein ccs1 OS=Rhodomonas salina GN=ccs1
PE=3 SV=1
Length = 441
Score = 269 bits (687), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 151/437 (34%), Positives = 242/437 (55%), Gaps = 6/437 (1%)
Query: 93 VKRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTW 152
+ + R+ ++ L NL LAI + +A A GT IEQ + FY YP P+FGF +
Sbjct: 5 INQYFRKSISVLGNLKLAIILLLMLALFSAFGTVIEQNQNVAFYENSYPNSAPLFGFLSA 64
Query: 153 RWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEF 212
IL LG ++++ + F L++++ +SL +CT QIP +K+AR W F ++++K
Sbjct: 65 NAILFLGLNNIYQTWWFTTLILLLAVSLFSCTLARQIPSLKMARLWQFYTKDQSLKKIGL 124
Query: 213 SDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSA 272
S L + S+ L L Y V KG LYA+KGL G+ PI VH ++++I+ G L
Sbjct: 125 SFNLQKTSLSKLAFTLKTDDYNVIQKGRFLYAYKGLPGKIGPIIVHASLIIILFGALLGN 184
Query: 273 TGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSD 332
F VP G F + +++ +G LS F E +V F + Y D G + QF+SD
Sbjct: 185 LSGFVSQELVPLGGVFHIQNIIN-SGTLSYVPQNF--EGYVKDFKIAYNDEGSIDQFYSD 241
Query: 333 LSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNG 392
LS+ + G+EV KTI VN+PLRY GI YQTDWS + L + + + L + + V G
Sbjct: 242 LSILNSTGEEVRSKTIYVNEPLRYEGIVFYQTDWSITNLAINVDQQTNIQLPLKSINVKG 301
Query: 393 DKKLFGTFLPLGDVNSPNVKGISMLARDLQ-SIVIYDQEGKFTGVRRPNSKLPIDIDGTK 451
+ K + LP+ +V I ++ DL I++Y + + N I ++G
Sbjct: 302 EGKFWIASLPIANVEKATNDNILLVLEDLTGKILLYSSNQQLLAI--VNVGENISLNGHS 359
Query: 452 IVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVIIGGKTN 511
+ + D I STGL +K+DPG+P VY GF LML+ +S+ S++Q+WA++D ++ + G+TN
Sbjct: 360 VKVTDIISSTGLQIKSDPGIPFVYIGFFLLMLSITLSYFSYSQVWAIKDNKTLYVSGRTN 419
Query: 512 RAKAEFPDDMNRLLDRV 528
RA F + ++++++
Sbjct: 420 RAIYSFEQQITKMMNKL 436
>sp|A0T0W1|CCS1_THAPS Cytochrome c biogenesis protein ccs1 OS=Thalassiosira pseudonana
GN=ccs1 PE=3 SV=1
Length = 421
Score = 268 bits (686), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 147/431 (34%), Positives = 233/431 (54%), Gaps = 12/431 (2%)
Query: 96 LPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWI 155
+ + + ++++L AI + IAA +GT IEQ + + Y YP N VFGF +W I
Sbjct: 1 MKQNIFKSIADLRFAIFILLVIAAFSVIGTVIEQDQSIETYKLNYPLTNRVFGFLSWDII 60
Query: 156 LTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDT 215
L G DH++ + F+ L+++ G+SL+ CT Q P +K+ARR F + + + S
Sbjct: 61 LKFGLDHVYKTWWFITLILLFGISLLTCTLLQQFPSLKIARRCQFFRTTQQFCRLNISTN 120
Query: 216 LPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGS 275
L S L + Y +F + +Y +KGL+GR API VH +M++I+ G + +
Sbjct: 121 LKHLSFSQLLFKIKENNYSIFQQKNIIYCYKGLIGRIAPIIVHFSMIIILIGAIIGSLSG 180
Query: 276 FRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSL 335
F+ VP+ F + +VL F P V +N F++ Y + QF+SDLS+
Sbjct: 181 FKAQEIVPKTETFHIQNVLNNGQFTFIP----KVSVRINDFWITYTKQTTITQFYSDLSI 236
Query: 336 FDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKK 395
+I G E+ R+TI VN P +Y GI YQTDW+ L++ D F L N +K
Sbjct: 237 LNIDGNEIDRQTIFVNSPAKYNGIDYYQTDWNIIGLRLRMQDSSIFQYPFINLP-NTQEK 295
Query: 396 LFGTFLPLGDVNSPNVKGISMLARDLQSIV-IYDQEGKFTGVRRPNSKLPIDIDGTKIVI 454
L+ T++ N G+++L +LQ +Y++ GKF G N L I+ I +
Sbjct: 296 LWLTWIS---TNQQLNDGLTILIDNLQGYCSVYNKVGKFIGNLELNESLKIE---NPITL 349
Query: 455 VDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVIIGGKTNRAK 514
+D + STGL +K DPG+ ++Y GF LM++T IS+++++QIW +QD + IGG T RA
Sbjct: 350 IDILSSTGLQIKADPGILLIYLGFLFLMISTLISYITYSQIWIVQDKNKIFIGGNTTRAT 409
Query: 515 AEFPDDMNRLL 525
EF + +L+
Sbjct: 410 FEFELEFLKLI 420
>sp|Q4G3C0|CCS1_EMIHU Cytochrome c biogenesis protein ccs1 OS=Emiliania huxleyi GN=ccs1
PE=3 SV=1
Length = 440
Score = 265 bits (676), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 150/432 (34%), Positives = 236/432 (54%), Gaps = 11/432 (2%)
Query: 94 KRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWR 153
K ++L L++L LAI +A+I L+ALGT IEQ + FY + YP P+ GF W+
Sbjct: 6 KLYTTKLLKKLADLRLAIWLLASIGILIALGTFIEQDQPLAFYQENYPTTAPILGFVDWK 65
Query: 154 WILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFS 213
+I +L + ++S+ F G++ SL+ACTYTTQIP +K R W F+ + +++RK +
Sbjct: 66 FITSLNLNTLYSNIWFFGIVGFFASSLLACTYTTQIPALKKFRLWEFITNFKSLRKFQLK 125
Query: 214 DTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSAT 273
LPR L G Y VF +G YA+ GL+GR PI VH ++L ++ G A
Sbjct: 126 RQLPRNLASTSVYQLYGKNYHVFRQGKKNYAYSGLLGRVGPILVHFSILFVLFGSACGAL 185
Query: 274 GSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDL 333
G + VP+G F + +++ P VN F++ Y + +V QF+SDL
Sbjct: 186 GGYTVQEIVPRGEIFHLQNLVKSGNLSKIPQ---YLSWRVNDFWITYTEEAKVNQFYSDL 242
Query: 334 SLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGD 393
S+ D+ G+EV RK I VN+PL Y G+++YQTDW L++ ND+ + + + +G
Sbjct: 243 SILDVKGQEVKRKIIFVNEPLVYNGVSVYQTDWDILGLKLKLNDQQTIQVPLNKISKSGR 302
Query: 394 KKLFGT-FLPLGDVNSPNVKGISMLARDLQ-SIVIYDQEGKFTGVRRPNSKLPIDIDGTK 451
G+ FL D NS + I++L DL +I +YD G + +L + +
Sbjct: 303 NFWLGSVFL---DGNSK--QKITILLNDLTGNIYVYDNAGLLVATTKL-GQLVVFPEDQS 356
Query: 452 IVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVIIGGKTN 511
+ + + +TGL LK DPG+ ++Y F +M++ ISFLS++QIW + I+ GK+N
Sbjct: 357 LRFQEFLTTTGLQLKEDPGLRLIYLSFFLVMVSIYISFLSYSQIWGFEKTDEFILAGKSN 416
Query: 512 RAKAEFPDDMNR 523
RA F +D +
Sbjct: 417 RAVLAFQEDFKK 428
>sp|A0T0G8|CCS1_PHATC Cytochrome c biogenesis protein ccs1 OS=Phaeodactylum tricornutum
(strain CCAP 1055/1) GN=ccs1 PE=3 SV=1
Length = 420
Score = 261 bits (667), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 141/433 (32%), Positives = 239/433 (55%), Gaps = 17/433 (3%)
Query: 96 LPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWI 155
+ +++ L++L +I + I+ +GT IEQ + + Y YP NPVFG TW I
Sbjct: 1 MKQQIFRLLADLRFSIFLLLLISFCSIVGTVIEQDQSIEIYKTNYPLTNPVFGVLTWDRI 60
Query: 156 LTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDT 215
L G DH++ + F L+ + GLSL+ CT+ Q+P +K+ARR F + + + S
Sbjct: 61 LLFGLDHVYRTWWFFALIFLFGLSLILCTFLQQLPSLKIARRCQFFRTTNQFYRLKISTV 120
Query: 216 LPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGS 275
L S + + G+ Y +F + +Y +KGL+GR API VHL+M+LI+ G + +
Sbjct: 121 LNDFSFNKILGRITGSQYSIFQQKNIVYCYKGLIGRIAPILVHLSMILILVGTIVGSLFG 180
Query: 276 FRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSL 335
F+ VP+ NF + ++L P T +N F++ Y + V QF+SD+S+
Sbjct: 181 FKAQEIVPKTENFHIQNILANGQLTVIP----KTSARINDFWITYTKTKTVSQFYSDISI 236
Query: 336 FDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSAL--QVLKNDEGPFNLAMAPLKVNGD 393
+ G E+ RKTISVN PL + G+ YQTDW+ L + + N+ + L + + +
Sbjct: 237 LNKQGNEIERKTISVNHPLIHNGVYYYQTDWNLVGLRFKTMANEIIEYPL----INFSEN 292
Query: 394 KKLFGTFLPLGDVNSPNVKGISMLARDLQSIV-IYDQEGKFTGVRRPNSKLPIDIDGTKI 452
+K++ T++ N +G+ + +L+ IY++ G+F G N + + +
Sbjct: 293 QKIWLTWI---STNKSLTEGVVTIIDNLEGYCSIYNETGQFLGNIELNEIINLK---QPL 346
Query: 453 VIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVIIGGKTNR 512
+++ I STGL +KTDPG+ I+Y+GF LML+T IS+++++QIW +Q + IGG TNR
Sbjct: 347 TLIEIISSTGLQIKTDPGIQIIYSGFFFLMLSTLISYITYSQIWIIQKEKKLFIGGTTNR 406
Query: 513 AKAEFPDDMNRLL 525
A +F + +++
Sbjct: 407 AVFDFELEFFKII 419
>sp|B2XTT2|CCS1_HETA4 Cytochrome c biogenesis protein ccs1 OS=Heterosigma akashiwo
(strain CCMP452) GN=ccs1 PE=3 SV=1
Length = 426
Score = 239 bits (610), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 141/436 (32%), Positives = 243/436 (55%), Gaps = 25/436 (5%)
Query: 98 RRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILT 157
++ L+NL AI + I+ + G+ IEQ + D+Y Q YP NP+ GF TW+ I
Sbjct: 2 EKIFKILANLKFAIALLLLISITITFGSIIEQDQTLDYYKQNYPLTNPIGGFLTWKVINM 61
Query: 158 LGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLP 217
+H++ + F+ LL+ +G+SL+ACT+ Q P +K +RR F ++ RK +F L
Sbjct: 62 FQLNHIYKNFWFISLLLSLGISLIACTFFQQFPGIKFSRRCYFSNNP---RKTDFQTQLK 118
Query: 218 RASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFR 277
+++ ++ GY VF + + Y KG++GR AP+ VHL+++LI+ G ++ G F
Sbjct: 119 TNLSRNIIYTIISEGYFVFQQKKNFYGTKGIIGRIAPVFVHLSIILILLGSIFASLGGFN 178
Query: 278 GSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTE-VHVNKFYMDYYDSGEVKQFHSDLSLF 336
+ +G F + +V S P S + + VN F+++YY + ++KQF+S+LS+
Sbjct: 179 SQELIGKGEIFHIQNVTS-----SGPLTKLSQQAIRVNDFWINYYPNNKIKQFYSNLSII 233
Query: 337 DIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKL 396
+ G+EV KTISVN PL Y +T YQTDW+ L++ N++ F + + N + K+
Sbjct: 234 NGDGQEVRSKTISVNKPLIYKDLTFYQTDWNLLGLRISHNNKN-FQIPVIQTTQNLN-KV 291
Query: 397 FGTFLPLGDVNSPNVKGISMLARDLQ-SIVIYDQEGKFTGVRRPNSKLPID--IDGTKIV 453
+ T+LPL S N+ G +++ + + +I IYD G+ N K+ + I+
Sbjct: 292 WLTWLPLESNTSKNLSGETIIINNYKGTIYIYDNNGQL------NKKIELSNFIENKNYK 345
Query: 454 IVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIW-----ALQDGTSVIIGG 508
+++ + TG+ +K+DPG+ +Y GFG LM++T +S+LS +Q+W Q+ + +
Sbjct: 346 LIEFLSVTGIQIKSDPGILFIYFGFGFLMVSTILSYLSFSQVWLGIDYLEQNNIKLTVNA 405
Query: 509 KTNRAKAEFPDDMNRL 524
KTNR K M ++
Sbjct: 406 KTNRTKVLLTTQMYKI 421
>sp|Q1XDC4|CCS1_PORYE Cytochrome c biogenesis protein ccs1 OS=Porphyra yezoensis GN=ccs1
PE=3 SV=1
Length = 440
Score = 238 bits (608), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 146/433 (33%), Positives = 225/433 (51%), Gaps = 19/433 (4%)
Query: 94 KRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWR 153
K + +L SNL +I + IA +GT IEQ + FY +Y N + W+
Sbjct: 12 KDIRWYLLRLFSNLQFSIILLLLIAIFSTIGTVIEQNKESSFYQTQYTLSNEYYNILNWK 71
Query: 154 WILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFS 213
I GF+H++++ FL LL + LSL C+ + QIP ++ ARRW F + +K S
Sbjct: 72 NIELFGFNHVYTTWWFLSLLFIFSLSLFTCSISRQIPSLQNARRWHFYKNPNQFKKFTGS 131
Query: 214 DTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSAT 273
+ + L L Y +F +G S+Y +KGL+GR API VH +++L++ G L
Sbjct: 132 QEIKTTQLNLLASCLQNYNYHIFQQGKSIYGYKGLLGRLAPIFVHGSIILLLTGSVLGLV 191
Query: 274 GSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDL 333
F VP G F + +++ F P + FS VN F ++Y + + QF SD+
Sbjct: 192 SGFSAQEMVPSGELFRLQNIISSGKFSYIPQE-FSAR--VNDFNIEYNPNKSISQFFSDI 248
Query: 334 SLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKV--- 390
S+ + GKE+ R TI VN PL + G+TIYQTDW A++V N+ N+ PLK
Sbjct: 249 SILNSEGKELKRSTIYVNKPLEFHGLTIYQTDWDIIAIRVRINNG---NILQIPLKSVLL 305
Query: 391 -NGDKKLFGTFLPLGDVNSPNVKGISMLARDLQ-SIVIYDQEGKFTGVRRPNSKLPIDID 448
N +K G + +S++ DLQ IY++ GK + N I+
Sbjct: 306 PNNNKIWIGVLFQEKE------SQLSVVLSDLQGQATIYNKNGK--NILSINIGEKYIIN 357
Query: 449 GTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVIIGG 508
+ I ++ I STGL +K DPG+PIVYA F L+ + +S++S++QIW ++ IGG
Sbjct: 358 NSTITFLNTIASTGLQIKNDPGIPIVYASFFFLITSISVSYISYSQIWIVEKNRHFYIGG 417
Query: 509 KTNRAKAEFPDDM 521
TNRA+ F +++
Sbjct: 418 VTNRAQLMFEEEL 430
>sp|B2XTC6|CCS1_HETA2 Cytochrome c biogenesis protein ccs1 OS=Heterosigma akashiwo
(strain NIES-293) GN=ccs1 PE=3 SV=1
Length = 423
Score = 237 bits (605), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 139/428 (32%), Positives = 240/428 (56%), Gaps = 27/428 (6%)
Query: 98 RRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILT 157
++ L+NL AI + I+ + G+ IEQ + D+Y Q YP NP+ GF TW+ I
Sbjct: 2 EKIFKILANLKFAIALLLLISITITFGSIIEQDQTLDYYKQNYPLTNPIGGFLTWKVINM 61
Query: 158 LGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLP 217
+H++ + F+ LL+ +G+SL+ACT+ Q P +K +RR F ++ RK +F L
Sbjct: 62 FQLNHIYKNFWFISLLLSLGISLIACTFFQQFPGIKFSRRCYFSNNP---RKTDFQTQLK 118
Query: 218 RASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFR 277
+++ ++ GY VF + + Y KG++GR AP+ VHL+++LI+ G ++ G F
Sbjct: 119 TNLSRNIIYTIISEGYFVFQQKKNFYGTKGIIGRIAPVFVHLSIILILLGSIFASLGGFN 178
Query: 278 GSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTE-VHVNKFYMDYYDSGEVKQFHSDLSLF 336
+ +G F + +V S P S + + VN F+++YY + ++KQF+S+LS+
Sbjct: 179 SQELIGKGEIFHIQNVTS-----SGPLTKLSQQAIRVNDFWINYYPNNKIKQFYSNLSII 233
Query: 337 DIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGD-KK 395
+ G+EV KTISVN PL Y +T YQTDW+ L++ N++ N + ++ + K
Sbjct: 234 NGDGQEVRSKTISVNKPLIYKDLTFYQTDWNLLGLRISHNNK---NFQIPVIQTTQNLNK 290
Query: 396 LFGTFLPLGDVNSPNVKGISMLARDLQ-SIVIYDQEGKFTGVRRPNSKLPID--IDGTKI 452
++ T+LPL S N+ G +++ + + +I IYD G+ N K+ + I+
Sbjct: 291 VWLTWLPLESNTSKNLSGETIIINNYKGTIYIYDNNGQL------NKKIELSNFIENKNY 344
Query: 453 VIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIW-----ALQDGTSVIIG 507
+++ + TG+ +K+DPG+ +Y GFG LM++T +S+LS +Q+W Q+ + +
Sbjct: 345 KLIEFLSVTGIQIKSDPGILFIYFGFGFLMVSTILSYLSFSQVWLGIDYLEQNNIKLTVN 404
Query: 508 GKTNRAKA 515
KTNR K
Sbjct: 405 AKTNRTKV 412
>sp|Q6B926|CCS1_GRATL Cytochrome c biogenesis protein ccs1 OS=Gracilaria tenuistipitata
var. liui GN=ccs1 PE=3 SV=1
Length = 435
Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 132/397 (33%), Positives = 208/397 (52%), Gaps = 15/397 (3%)
Query: 124 GTAIEQGEVPDFYFQKYPEDNPVFG-FFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMA 182
GT IEQ + +Y YP +N FG W+ IL LG DH++ +P F+ +LV+ SL+A
Sbjct: 34 GTIIEQNQSIVYYQMNYPINNQPFGRIMNWKIILNLGLDHIYLNPCFVLVLVLFFCSLLA 93
Query: 183 CTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSL 242
CT++ Q+P ++ AR+W FL I L + SI ++ L Y +F K ++
Sbjct: 94 CTFSNQLPSLRNARKWKFLQYKNHINCNNHFVELDKISICNIIYSLYSNNYYIFHKENNI 153
Query: 243 YAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLST 302
YA+KGL GR API VH +++L G +S G F +P G F + +++ +GF S
Sbjct: 154 YAYKGLSGRIAPIVVHFSIILTFIGSLISLLGGFTAQEIIPTGEIFHIKNII-QSGFNSE 212
Query: 303 PTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIY 362
+ + ++ F + Y V+QF S + +++ GK + +K +SVN PL GIT Y
Sbjct: 213 IPNNITGKIK--DFDIKYGPDNSVEQFVSKIIIYNNQGKNINQKQVSVNSPLILKGITFY 270
Query: 363 QTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGISMLARDLQ 422
QTDW L+ + + K+N ++ L+ LPL K I ++ +L
Sbjct: 271 QTDWKIDTLRFKIGNSKIIQQPIIKYKIN-NQILWSCRLPLNK-----EKYIFLVIANLN 324
Query: 423 -SIVIYD-QEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGA 480
I IYD T ++ + I ++ T + IV+ + TG+ +KTDPG+ + Y GF
Sbjct: 325 DKISIYDISNNLLTSIKLDET---IVVNNTTLKIVEIMTKTGIQVKTDPGIIVTYTGFFI 381
Query: 481 LMLTTCISFLSHTQIWALQDGTSVIIGGKTNRAKAEF 517
LML+ IS++S++QIW ++ I G TNRA F
Sbjct: 382 LMLSIVISYISYSQIWVTSIIQNIKIAGSTNRATLTF 418
>sp|P51363|CCS1_PORPU Cytochrome c biogenesis protein ccs1 OS=Porphyra purpurea GN=ccs1
PE=3 SV=1
Length = 437
Score = 214 bits (545), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 136/430 (31%), Positives = 225/430 (52%), Gaps = 14/430 (3%)
Query: 100 VLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLG 159
+L SNL +I + IA+ +GT IEQ + DFY Y F W+ I G
Sbjct: 16 LLRLFSNLQFSIILLLVIASFSVIGTIIEQNKDLDFYQAHYSVSGEHFIILNWKNIELFG 75
Query: 160 FDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRA 219
+H++++ FL LL + LSL+ C+ + QIP ++ ARRW F + +K S + +
Sbjct: 76 LNHVYTTWWFLTLLFIFSLSLLVCSLSRQIPSLQNARRWCFYKNPNQFKKFTGSQEIQKT 135
Query: 220 SIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGS 279
++ + L Y +F +G S+Y +KGL+GR API VH +++L++ G L F
Sbjct: 136 TLHLVASCLQKFNYHIFQQGNSIYCYKGLLGRLAPIFVHASIILLLIGSVLGLVSGFSAQ 195
Query: 280 VTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIG 339
VP G F + +++ F P D FS VN F ++Y + QF SD+S+ D
Sbjct: 196 EMVPSGELFRLQNIIASGQFSYIPQD-FSAR--VNNFIIEYNQDNSISQFFSDISILDTE 252
Query: 340 GKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGT 399
G E+ TI VN PL++ G+TIYQTDW A+++ N+ + + + + +K
Sbjct: 253 GTELKHSTIHVNSPLQFKGLTIYQTDWDIIAIRIKINNTDTLQIPLKKVVLPNNK----- 307
Query: 400 FLPLGDVNSPNVKGISMLARDLQ-SIVIYDQEG-KFTGVRRPNSKLPIDIDGTKIVIVDA 457
+ +G + ++++ +DLQ +Y++ G K V ID I +
Sbjct: 308 -IWVGLIAQDQDNQLALVLQDLQKQATLYNKSGEKIMSVTIGEKYF---IDNNIIAFLSI 363
Query: 458 IGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVIIGGKTNRAKAEF 517
+ STGL +K+DPG+PIVY F L+ + +S++S++QIW ++ IGG TNRA+ F
Sbjct: 364 VPSTGLQIKSDPGIPIVYTSFFFLITSVSVSYISYSQIWIIEKKHRFYIGGVTNRAQLTF 423
Query: 518 PDDMNRLLDR 527
+++ ++ +R
Sbjct: 424 EEELLKISNR 433
>sp|Q3AZN7|CCS1_SYNS9 Cytochrome c biogenesis protein CcsB OS=Synechococcus sp. (strain
CC9902) GN=ccsB PE=3 SV=1
Length = 426
Score = 192 bits (487), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 132/433 (30%), Positives = 213/433 (49%), Gaps = 23/433 (5%)
Query: 98 RRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILT 157
+R++A LS+L +AI + IA A+GTAI QG+ P Y + Y P G +L
Sbjct: 2 KRLIAWLSDLRVAIVLLFLIALASAVGTAIPQGDAPRSYVEAY-ATRPWLGLLNGEQVLQ 60
Query: 158 LGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLP 217
L DH++SS FL LL +GL+L+ C++ Q P ++ ARRW + + K +++LP
Sbjct: 61 LQLDHVYSSVWFLSLLAWLGLALILCSWRRQWPALQAARRWIDYSNPRQLSKLAIAESLP 120
Query: 218 ----RASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSAT 273
+++Q +L G+ + K L A KG GR P+ VH ++L+M G
Sbjct: 121 CTDSNSALQAFSTVLSQQGWRLERKDNRLAARKGTAGRVGPLLVHTGLILLMLGAVWGVL 180
Query: 274 GSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDL 333
R + G D+L +G D+ + + F +D +G +QF S L
Sbjct: 181 AGNRLERFLAPGRTL---DLLSRDG------DS-QVSILLEAFQVDRDPAGRAEQFRSQL 230
Query: 334 SLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGD 393
L + G + + ISVN PLR+ GITIYQ DWS +A+ + LA+ G+
Sbjct: 231 HLEENGNS--LDREISVNHPLRHRGITIYQADWSLAAITLQIGRSPQLQLALRSFPELGE 288
Query: 394 KKLFGTFLPLG-DVNSPNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKI 452
+ ++G LP D + P + + I I+D +G + RP +D+ G +
Sbjct: 289 Q-VWGLVLPTRPDGSEPVFLSVE---NEQGPINIFDTDGTLLTLLRPGGP-AVDVKGLPM 343
Query: 453 VIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVIIGGKTNR 512
+ + ++GL LK DPGVP+VY GF +++ +S ++ Q+WA+ + +GG NR
Sbjct: 344 RVNSVLPASGLLLKRDPGVPLVYLGFAVMLIGGGLSLIATRQLWAIASEGQLHVGGLCNR 403
Query: 513 AKAEFPDDMNRLL 525
F ++ LL
Sbjct: 404 NLTAFSKELPSLL 416
>sp|O78437|CCS1_GUITH Cytochrome c biogenesis protein ccs1 OS=Guillardia theta GN=ccs1
PE=3 SV=1
Length = 414
Score = 191 bits (485), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 140/433 (32%), Positives = 229/433 (52%), Gaps = 29/433 (6%)
Query: 99 RVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTL 158
+ L L+NL +AI + AIA ALGT IEQ + DFY + YP P+F F T IL
Sbjct: 6 KFLNKLNNLTVAIIILLAIALASALGTVIEQNKNTDFYLKNYPLTKPLFNFVTSDLILKF 65
Query: 159 GFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPR 218
G DH+++S F+ L++++ LSL CT T Q+P +K+AR W F + K +
Sbjct: 66 GLDHVYTSWWFIFLIILLLLSLTLCTITRQLPALKLARLWQFYTNFNTKAKFQIRFKTNS 125
Query: 219 ASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRG 278
+S+ L L Y++ +YA+KG+ GR +PI VH ++++++ G LS T +G
Sbjct: 126 SSLTKLTYYLEEKNYKIKHFNHFVYAYKGIFGRVSPIIVHFSLVIVLIGSMLSTT---QG 182
Query: 279 SVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDI 338
F+V + P D + E +VN F + Y G + QF+SDL L +
Sbjct: 183 RTQEA----FIVVNQEKP------VLDTY--EAYVNDFKIAYNSQGLIDQFYSDLIL-ET 229
Query: 339 GGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKV-NGDKKLF 397
++KTI VN+PL Y ITIYQTDW+ L + +++ +++ + +++ NG + +
Sbjct: 230 RQASKIQKTIYVNEPLNYSNITIYQTDWNIDNLVICIDNQNYYSIPLQFIELPNGSESKY 289
Query: 398 GTFLPLGDVNSPNVKGISMLA--RDLQSIV-IYDQEGKFTGVRRPNSKLPIDIDGTKIVI 454
+N ++ G S+ DL IV +Y+Q + I ++G I
Sbjct: 290 W-------INRLDLFGQSVFCVVNDLTGIVYLYNQNKDLICISSLGE--FITLNGHTITF 340
Query: 455 VDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVIIGGKTNRAK 514
+ STGL K D +P+VY GF LM++T +S++S++Q+W +++G++ I G TNRAK
Sbjct: 341 NKLVASTGLQFKLDSFIPLVYLGFLLLMISTLLSYISYSQVWLVKNGSTTYIFGSTNRAK 400
Query: 515 AEFPDDMNRLLDR 527
F + + ++
Sbjct: 401 FAFIKQLTEIANQ 413
>sp|Q7VA54|CCS1_PROMA Cytochrome c biogenesis protein CcsB OS=Prochlorococcus marinus
(strain SARG / CCMP1375 / SS120) GN=ccsB PE=3 SV=1
Length = 429
Score = 188 bits (478), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 143/437 (32%), Positives = 220/437 (50%), Gaps = 26/437 (5%)
Query: 98 RRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILT 157
R+++ LS+L +AI + IA ALGTA+ QGE + Y + Y E G +L
Sbjct: 5 RKIINWLSSLKVAIVLLILIALGSALGTALPQGEKAESYLKNY-EVTRFLGVINGDLLLQ 63
Query: 158 LGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRK----QEFS 213
L DH++SS FL LL + SL+ C++ Q P +K A W + I+K Q F
Sbjct: 64 LQLDHVYSSFWFLFLLTWLSFSLIICSWKRQWPSLKKAIDWIDYKEPKQIQKLAISQSFR 123
Query: 214 DTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSA- 272
I L L G++V +K L A KGL+GR P VH ++L++ G T
Sbjct: 124 IQKNDNGINPLANYLENNGWQVKIKSSRLAARKGLIGRVGPPLVHFGLILLIIGATYGVL 183
Query: 273 TGSFRGSVTVPQ-GLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHS 331
G P+ LN +L PNG V + F +D +G+ +QF S
Sbjct: 184 KGQRLEKFLAPERSLN-----LLSPNGI-------SKVSVKLTDFKIDRDPTGKPEQFRS 231
Query: 332 DLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVN 391
L L + + + + ISVN PLR+ GIT+YQ DWS +A+ + N+ + +
Sbjct: 232 KLELHNNNINKSIYEEISVNHPLRFQGITLYQADWSLAAITIQINNSPKIQFPLNKIDEL 291
Query: 392 GDKKLFGTFLPLGDVNSPNVKGISM-LARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGT 450
GD+ ++G LP + ++K + + L+ + + + +EG G+ RPN PI I +
Sbjct: 292 GDQ-VWGIVLP--QMPDSDLKPLLLTLSSEQGPVRFFSEEGNPAGIGRPNGN-PILIGTS 347
Query: 451 KIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVI--IGG 508
KI I+D I S+G+ LK DPGVPIVY GF ++ + S +S Q+W +Q+ S + IGG
Sbjct: 348 KISIIDVIPSSGILLKYDPGVPIVYLGFAISLIGSVFSIISTKQLWIIQEEESRLMHIGG 407
Query: 509 KTNRAKAEFPDDMNRLL 525
+NR + F + N ++
Sbjct: 408 LSNRNLSGFANQFNSII 424
>sp|A9BCE8|CCS1_PROM4 Cytochrome c biogenesis protein CcsB OS=Prochlorococcus marinus
(strain MIT 9211) GN=ccsB PE=3 SV=1
Length = 429
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 131/436 (30%), Positives = 222/436 (50%), Gaps = 21/436 (4%)
Query: 99 RVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTL 158
RVL LS+L +AI + IA A+GT I QG+ D Y Y + +P G IL +
Sbjct: 6 RVLNWLSSLKVAILLLFFIALASAIGTFIPQGDQSDNYINNYAK-HPWLGLINGHLILRM 64
Query: 159 GFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTL-- 216
DH++SS FL LL +G++LM C++ Q P +K A +W + I+K S+ +
Sbjct: 65 QLDHVYSSYWFLFLLSWLGIALMICSWRRQWPTLKAAMKWIDYDQSTQIKKLAISEEVIV 124
Query: 217 --PRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATG 274
+I+ L L+ +G++V + A KG++GRF P VH ++ +M G TL A
Sbjct: 125 QDSGLAIKKLHNQLISSGWDVKADSNRIAARKGVIGRFGPPLVHFGLIFLMIGATLGALE 184
Query: 275 SFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLS 334
R + G + D++ P+G ++ + F + +G+ +QF S +
Sbjct: 185 GQRVEKFLEPGKSI---DLISPDGI-------NKLKIKLKDFQILRLPNGQPEQFLSKVE 234
Query: 335 LFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDK 394
L D ++ + + ISVN PLR+ G+TIYQ DW+ S + + + L + + G+
Sbjct: 235 LSDGSNQQPISREISVNHPLRFQGLTIYQADWALSGINMQFGNSPKLQLPLKAIPELGE- 293
Query: 395 KLFGTFLPLGDVNSPNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVI 454
+++G LP D+++ + ++ + Y QEGK P I I+G + +
Sbjct: 294 QVWGISLP--DLDNAGKSILLTISSETGPARFYSQEGKSITEITPGGNKEI-INGLETQV 350
Query: 455 VDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWAL--QDGTSVIIGGKTNR 512
++ + S+G+ +K DPGVP+VY GF ++ + IS +S +WAL ++ + IGG +NR
Sbjct: 351 IEVLQSSGILIKYDPGVPLVYIGFAITLIGSLISIISTKMLWALWEEENGLLFIGGLSNR 410
Query: 513 AKAEFPDDMNRLLDRV 528
+ F +D LL +
Sbjct: 411 NLSGFANDFPTLLKVI 426
>sp|Q46J48|CCS1_PROMT Cytochrome c biogenesis protein CcsB OS=Prochlorococcus marinus
(strain NATL2A) GN=ccsB PE=3 SV=1
Length = 426
Score = 181 bits (460), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 129/439 (29%), Positives = 215/439 (48%), Gaps = 35/439 (7%)
Query: 99 RVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTL 158
+VL LS+L +AI + IA A GT I Q E FY+ + NP G + +L
Sbjct: 6 QVLNWLSSLKIAILLLLVIAVSCAAGTLIPQQESNQFYYDNF-NKNPFLGIINAKILLLF 64
Query: 159 GFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTL-- 216
FDH+++S FL LL+ +GL+L C++ Q+P++K A W S I K + T+
Sbjct: 65 EFDHVYTSFWFLFLLIWLGLALSVCSFRRQLPILKSALNWIDYKSPSQIAKLSVAQTIVT 124
Query: 217 --PRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATG 274
S++ + + L G+ V + A +G++GR PI +HL M+L+M G T G
Sbjct: 125 NNCAKSLEKIKLNLKKQGWNVKETDGRIAARQGVIGRLGPILIHLGMILLMIGAT---YG 181
Query: 275 SFRGSVTVPQGLNFVVGDVLGPNGF--LSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSD 332
S G + L P L + + + KF ++ G +Q+ S
Sbjct: 182 SLNGK---------TIEKFLAPGRSIDLLNNNEEKGLTIELQKFQIERDPQGRAEQYKSI 232
Query: 333 LSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNG 392
+++ + G K ISVN PLRY G+T+YQ DWS +A+ + ++ + + P+ G
Sbjct: 233 VNVIEPNGNN-QSKEISVNYPLRYKGLTLYQADWSLAAITIKIDNSPKLQIPIKPISELG 291
Query: 393 DKKLFGTFLPLGDVNSPNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPID----ID 448
+ +++GT +P + + + +L + IYD +G +KL I+ +
Sbjct: 292 E-QVWGTIIPTNKDGKNQI--LLTVDSELGPVNIYDNDGTLL------TKLIINKEEKVK 342
Query: 449 GTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDG--TSVII 506
G I I++ I S+GL LK DPGVP VY F +++ +S +S +IW L + + + I
Sbjct: 343 GALIKIINIIPSSGLLLKHDPGVPFVYLSFAIILIGGSLSIISTKKIWVLHENEKSMIYI 402
Query: 507 GGKTNRAKAEFPDDMNRLL 525
GG +NR + ++ L+
Sbjct: 403 GGLSNRNLSGLSKELPNLI 421
>sp|B1X3X2|CCS1_PAUCH Cytochrome c biogenesis protein ccsB OS=Paulinella chromatophora
GN=ccsB PE=3 SV=1
Length = 435
Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 122/449 (27%), Positives = 216/449 (48%), Gaps = 30/449 (6%)
Query: 98 RRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILT 157
+ VL +S+L +AI + IA +LGTA+ Q E + Y++ Y +P F+ I+
Sbjct: 2 KHVLKWISDLRVAIFLLLIIALSSSLGTALPQKESAESYYEAY-NSSPWLKVFSGESIIQ 60
Query: 158 LGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTL- 216
L DH++SS FL LL+ +G++L+ C++ Q+P ++ RW + + K ++T+
Sbjct: 61 LQLDHVYSSDWFLSLLLWLGIALVFCSWRRQLPALQFTLRWIDYCNPRQLSKLALAETII 120
Query: 217 ---PRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSAT 273
ASI+ L +L G++V K L A +G+ GR P+ VH ++++M G
Sbjct: 121 STDASASIKRLEQLLKNQGWQVQAKSGRLAARRGIAGRVGPLMVHTGLVILMLGAVWGVL 180
Query: 274 GSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDL 333
G R + G ++L +G + + F ++ G +Q+ S L
Sbjct: 181 GGHRLERFLAPGREM---ELLNSHG-------KSQLNIALESFQIERDPVGRPEQYRSQL 230
Query: 334 SLFDIGGK---------EVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLA 384
L ++G + + + ISVN PLRYGG+T+YQ DW+ +A+ V L
Sbjct: 231 RLRELGNSRENNSGSIDKSLNREISVNHPLRYGGMTVYQADWALAAITVQLGRSPLLQLP 290
Query: 385 MAPLKVNGDKKLFGTFLPLGDVNSPNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLP 444
+ G++ ++G LP S V + L+ + I ++ +G RP +
Sbjct: 291 LEQFPQLGEQ-VWGVVLPTQQDGSNPV--LLALSSEKGPIEVFASDGSLITTLRPGG-VA 346
Query: 445 IDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQ--DGT 502
I+ K+ + + ++GL LK DPGVP+VY GF ++ +S +S QIWA+ +
Sbjct: 347 ATINDVKVRVESILPASGLLLKRDPGVPLVYIGFAVALMGGGLSLISTRQIWAIAELEQQ 406
Query: 503 SVIIGGKTNRAKAEFPDDMNRLLDRVPEL 531
+GG NR F ++ + + + ++
Sbjct: 407 RFHVGGLCNREFTNFAQELPQFISEIQQI 435
>sp|Q0I7P7|CCS1_SYNS3 Cytochrome c biogenesis protein CcsB OS=Synechococcus sp. (strain
CC9311) GN=ccsB PE=3 SV=1
Length = 435
Score = 172 bits (437), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 135/445 (30%), Positives = 215/445 (48%), Gaps = 29/445 (6%)
Query: 98 RRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILT 157
RR+ A LS+L LAI + IA ALGT + Q E PD Y +++ D P G +L
Sbjct: 5 RRLFALLSDLRLAILLLLLIAGASALGTILPQNEAPDLYLERFNAD-PWLGMINGEQMLQ 63
Query: 158 LGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTL- 216
L D ++SS FL LL +GL+L+ C++ Q P + RW + K ++++
Sbjct: 64 LQLDSIYSSVWFLSLLAWLGLALILCSWRRQWPALLATTRWIDYRQPRQLSKLALAESIL 123
Query: 217 ---PRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSAT 273
+++ L L G++V L A +G++G+ P+ VH ++L++ G A
Sbjct: 124 CSNGESALDTLSEELQKQGWQVQRNEDRLAARRGVIGKVGPLLVHTGLVLLLIGAAWGAL 183
Query: 274 GSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDL 333
R + G D+L P+G + S + + +F ++ +G +QF S L
Sbjct: 184 SGNRLERFLAPGRAL---DLLDPSG-----NNRLS--LTLERFAIERDPAGRTEQFRSTL 233
Query: 334 SLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGD 393
L GG R ISVN PLRY G+T+YQ DWS +A+ V L + G+
Sbjct: 234 RLDPPGGPSEQR-MISVNHPLRYRGMTVYQADWSLAAITVQIGKSPELQLPLRSFPELGE 292
Query: 394 KKLFGTFLPLG-DVNSPNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKI 452
+ ++G LP D + P + S + + ++D +G G RP +I G +
Sbjct: 293 Q-IWGLVLPTRPDGSEPVLMSTS---SEQGPVQVFDADGSLLGNLRPGGA-STEIKGLPL 347
Query: 453 VIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQD-------GTSVI 505
+ + + ++GL LK DPGVP+VYAGF +L +S ++ Q+WA+ D +
Sbjct: 348 RVANIMPASGLLLKRDPGVPLVYAGFAITLLGGGLSLIATRQLWAVLDPAPFQPSNRKLH 407
Query: 506 IGGKTNRAKAEFPDDMNRLLDRVPE 530
IGG NR A ++ RL+ RV E
Sbjct: 408 IGGLCNRNLAGLAAELPRLISRVDE 432
>sp|A5GNE2|CCS1_SYNPW Cytochrome c biogenesis protein CcsB OS=Synechococcus sp. (strain
WH7803) GN=ccsB PE=3 SV=1
Length = 430
Score = 172 bits (436), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 141/437 (32%), Positives = 217/437 (49%), Gaps = 24/437 (5%)
Query: 99 RVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTL 158
RV A LS+L LAI + IAA A+GT + Q E P+ Y +++ D P G +L
Sbjct: 6 RVFAILSDLRLAIALLLLIAAASAVGTILPQQEAPELYLERFNAD-PWLGLINGDQMLAF 64
Query: 159 GFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPR 218
DH++SS FL LL +GL+LM C++ Q P ++ A RW + K ++TL
Sbjct: 65 QLDHLYSSVWFLALLAWLGLALMLCSWRRQWPALQAAMRWIDYTRPRQLSKLALAETLSC 124
Query: 219 AS----IQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATG 274
AS + L + L G++V L A +G+VGR P+ VH ++L++ G A
Sbjct: 125 ASSDGALSSLAIELKSRGWQVKQHQDRLAARRGVVGRVGPLLVHTGLVLLLIGAAWGALA 184
Query: 275 SFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLS 334
R + G + D+L P G A + + F + +G +QF S L+
Sbjct: 185 GQRLERFLAPGRSL---DLLDPAG-------ANRLSLTLENFSITRDPAGRAEQFQSTLT 234
Query: 335 LFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDK 394
L G+E R+TISVN PLRY G+T+YQ DWS +A+ V L ++ GD+
Sbjct: 235 L-SPPGQEDERRTISVNHPLRYQGMTVYQADWSLAAVTVQIGKSPMLQLPLSTFPELGDQ 293
Query: 395 KLFGTFLPLG-DVNSPNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIV 453
++G LP D + P S +Q ++ +G RP + ++ G +
Sbjct: 294 -VWGLVLPTRPDGSEPVFLSTSSEQGPVQ---VFGSDGALITNLRPGGE-GTEVRGLPLK 348
Query: 454 IVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGT--SVIIGGKTN 511
++D + ++GL LK DPGVP+VYAGF +L +S ++ QIW + D + IGG N
Sbjct: 349 VIDILPASGLLLKRDPGVPLVYAGFAITLLGGALSMVATRQIWVISDAVHQRLHIGGLCN 408
Query: 512 RAKAEFPDDMNRLLDRV 528
R F ++ L++RV
Sbjct: 409 RNLLGFAAELPELINRV 425
>sp|A2BYI5|CCS1_PROM5 Cytochrome c biogenesis protein CcsB OS=Prochlorococcus marinus
(strain MIT 9515) GN=ccsB PE=3 SV=1
Length = 428
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 131/452 (28%), Positives = 213/452 (47%), Gaps = 52/452 (11%)
Query: 98 RRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILT 157
+ ++ +S+L AI + IA +GT I QG P Y Y E P+FG ++
Sbjct: 5 KNLILKISSLKFAITLIIFIAITSGVGTFIPQGNDPQEYIDFYNE-TPIFGLINGYQVIK 63
Query: 158 LGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLP 217
L +H+++S FL L+++ +SL AC++ QIP +K A +W+ + + K + +
Sbjct: 64 LQLNHVYTSNWFLFSLILLCISLAACSFRRQIPSLKAALKWTDYKNEKRFYKLQLTTNYK 123
Query: 218 RASIQDLGVILMG------AGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLS 271
+ QD+ IL G+ + L A KGLVG+ PI VH+ +++++ G S
Sbjct: 124 VS--QDVNHILKADSLLRKKGWSISKFENRLSARKGLVGKLGPIIVHIGLIILLIG---S 178
Query: 272 ATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHS 331
A G+F S + Q L LG + L + +N F ++ G+ KQF S
Sbjct: 179 AYGNF-SSQSKEQYLR------LGESLDLINENKNSKFTIKLNNFLIERESDGKPKQFIS 231
Query: 332 DLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVN 391
L+ F KT VN P+R+ G+TIYQ DWS S + VL+ D + L + P+
Sbjct: 232 YLNFFSEEQHLNEIKTTQVNHPIRFRGLTIYQADWSVSNI-VLEIDSVLYQLKLKPIPEI 290
Query: 392 GDKKLFGTFLPLGDVNSPN-------------VKGISMLARDLQSIVIYDQEGKFTGVRR 438
GD+ ++G + LG N N V I +D + IY +
Sbjct: 291 GDQ-IWGLLIELGRENKKNYLLTIDNENGPLKVSNI----KDFSEMFIYLNDD------- 338
Query: 439 PNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWAL 498
PI+I+ +K+ + I S+GL +K DP +P +Y F ++L T S + QIW L
Sbjct: 339 -----PIEINSSKLSLKKIIPSSGLIIKNDPSIPFIYLAFTLIILGTIFSLIPTNQIWIL 393
Query: 499 --QDGTSVIIGGKTNRAKAEFPDDMNRLLDRV 528
++ + +GG +NR F + +L D +
Sbjct: 394 FNENSNKLFVGGLSNRNLLGFKKEFQKLSDEI 425
>sp|Q7V5R7|CCS1_PROMM Cytochrome c biogenesis protein CcsB OS=Prochlorococcus marinus
(strain MIT 9313) GN=ccsB PE=3 SV=1
Length = 430
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 135/435 (31%), Positives = 221/435 (50%), Gaps = 23/435 (5%)
Query: 98 RRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILT 157
+R+LA +S+L +AIG + IA ALGTAI QGE+ + Y + Y D P GF IL
Sbjct: 5 KRLLAWISDLRIAIGLLLVIALASALGTAIPQGELRESYLEGY-SDKPWLGFVNGSMILR 63
Query: 158 LGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTL- 216
L DH+++S FL LL +GL+L+ C++ Q P ++ A +W + K ++T+
Sbjct: 64 LQLDHVYTSSWFLALLAWLGLALILCSWRRQWPALQAALQWIDYQEPRQLSKLAIAETIS 123
Query: 217 --PR-ASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSAT 273
P+ SI L L G++V + L A +G++GR P+ VHL ++L+M G +
Sbjct: 124 SPPKNESIDKLAAHLHQQGWQVQQQPGRLAARRGIIGRAGPMLVHLGLVLLMLGAVWGSL 183
Query: 274 GSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDL 333
G R + G + D+L +G ++ + F ++ +G +QF S L
Sbjct: 184 GGNRLEQFLAPGRSL---DLLNRDG-------NSHLKLTLTNFGIERDPAGRPEQFRSQL 233
Query: 334 SLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGD 393
L + G +SVN PLR+ G+T+YQ DWS +A+ + L + G+
Sbjct: 234 ELLEPGQDTAKLHEVSVNHPLRFHGLTVYQADWSLAAITLQLGRSPQLQLPLRTFPELGE 293
Query: 394 KKLFGTFLPLG-DVNSPNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKI 452
+++G LP D + P + ++ A +Q ++D G+ RP ++ G I
Sbjct: 294 -QVWGLVLPTNPDGSEPVLLSLTSEAGPVQ---VFDATGERLASLRPAGPT-AEVKGIPI 348
Query: 453 VIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQD--GTSVIIGGKT 510
IVD + ++GL LK DPGVP+VY GF ++ +S ++ Q+WA+ D + +GG
Sbjct: 349 RIVDVLPASGLLLKRDPGVPLVYIGFLITLVGGGLSMIATRQLWAVGDPENECLHVGGLC 408
Query: 511 NRAKAEFPDDMNRLL 525
NR F +++ LL
Sbjct: 409 NRNLTGFANELPSLL 423
>sp|A2C6W3|CCS1_PROM3 Cytochrome c biogenesis protein CcsB OS=Prochlorococcus marinus
(strain MIT 9303) GN=ccsB PE=3 SV=1
Length = 432
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 137/440 (31%), Positives = 226/440 (51%), Gaps = 27/440 (6%)
Query: 98 RRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILT 157
+R+LA +S+L +AIG + IA ALGTAI QGE+ D Y + Y D P GF IL
Sbjct: 5 KRLLAWISDLRIAIGLLFVIALSSALGTAIPQGELRDSYLEGY-SDKPWLGFVNGSMILR 63
Query: 158 LGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTL- 216
L DH+++S FL LL +GL+L+ C++ Q P ++ A +W + K ++T+
Sbjct: 64 LQLDHVYTSSWFLALLAWLGLALILCSWRRQWPALQAALQWIDYQEPRQLSKLAIAETIS 123
Query: 217 --PR-ASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSAT 273
P+ SI L L G++V + L A +G++GR P+ VHL ++L+M G +
Sbjct: 124 SPPKNESIDKLAAHLHQQGWQVQQQPGRLAARRGIIGRVGPMLVHLGLVLLMLGAVWGSL 183
Query: 274 GSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDL 333
G R + G + D+L +G ++ + F ++ +G +QF S L
Sbjct: 184 GGNRLEQFLAPGRSL---DLLNRDG-------NSHLKLTLTNFGIERDPAGRPEQFRSQL 233
Query: 334 SLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGD 393
L + G +SVN PLR+ G+T+YQ DWS +A+ L+ P L PL+ +
Sbjct: 234 ELLEPGQDTAKLHEVSVNHPLRFHGLTVYQADWSLAAI-TLQLGRSP--LLQLPLRTFPE 290
Query: 394 --KKLFGTFLPLG-DVNSPNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGT 450
++++G LP D + P + ++ A +Q ++D G+ RP ++ G
Sbjct: 291 LGEQVWGLVLPTNPDGSEPVLLSLTSEAGPVQ---VFDATGERLASLRPAGPT-AEVKGI 346
Query: 451 KIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQD--GTSVIIGG 508
I +V+ + ++GL LK DPGVP+VY GF ++ +S ++ Q+WA+ D + +GG
Sbjct: 347 PIRVVEVLPASGLLLKRDPGVPLVYIGFLITLVGGGLSMIATRQLWAVGDPENECLHVGG 406
Query: 509 KTNRAKAEFPDDMNRLLDRV 528
NR F +++ LL +
Sbjct: 407 LCNRNLTGFANELPSLLASI 426
>sp|A3PEU8|CCS1_PROM0 Cytochrome c biogenesis protein CcsB OS=Prochlorococcus marinus
(strain MIT 9301) GN=ccsB PE=3 SV=1
Length = 428
Score = 169 bits (429), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 129/445 (28%), Positives = 226/445 (50%), Gaps = 30/445 (6%)
Query: 92 LVKRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFT 151
+VK L R+ S+L AI + IA +GT I QG FY + + E P+FGF
Sbjct: 3 IVKDLIFRI----SSLKFAISLIIFIAISSGVGTFIPQGSNSKFYIENFDEA-PIFGFLN 57
Query: 152 WRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQE 211
+L L DH+++S FL L+++ +SL AC++ QIP +K + +W S + RK +
Sbjct: 58 GEKVLILQLDHIYTSLWFLFALILLCISLAACSFRRQIPSLKASLKWIEYKSEKKFRKLQ 117
Query: 212 FSDTLPRASIQDL----GVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAG 267
+ + ++DL + L G++ + + A KGL+G+ P+ VH+ +++++ G
Sbjct: 118 LNSSYQINEVEDLISKADLFLKKRGWKTYKFKSHISARKGLIGKIGPLVVHIGLIVLLIG 177
Query: 268 GTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVK 327
SA GSF S + Q L + G+ L ++ T++ + + F ++ G K
Sbjct: 178 ---SAYGSFT-SQSKEQYL--LPGESL---DLINESTNS-KANIKLVDFSIERESDGIPK 227
Query: 328 QFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAP 387
QF S L K KT VN P+R+ G+TIYQ DW+ S + VL+ D + L +
Sbjct: 228 QFISKLDFTSEDSKFNEVKTAKVNHPIRFKGLTIYQADWAISNI-VLEIDNILYQLQLKE 286
Query: 388 LKVNGDKKLFGTFLPLGDVNSPNVKGISMLARDLQS--IVIYDQEGKFTGVRRPNSKLPI 445
+ G+ +++G + LG N +L D ++ + I + E F+G ++ P+
Sbjct: 287 IPEIGN-QVWGILIELGSETKKNF----LLTIDNENGPLKISNTEN-FSGNNLYINENPL 340
Query: 446 DIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWAL--QDGTS 503
+++ +K+ + I S+GL +K DP +P +Y F ++ T IS + Q+W L Q+ S
Sbjct: 341 EVNSSKVSLKKIIPSSGLIIKNDPSIPFIYFSFILIIFGTIISLIPTNQLWILVNQESQS 400
Query: 504 VIIGGKTNRAKAEFPDDMNRLLDRV 528
+ IGG +N+ F + +L + +
Sbjct: 401 LSIGGLSNKNLVGFKKEFFKLSEEI 425
>sp|A2C4K5|CCS1_PROM1 Cytochrome c biogenesis protein CcsB OS=Prochlorococcus marinus
(strain NATL1A) GN=ccsB PE=3 SV=1
Length = 426
Score = 166 bits (419), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 129/439 (29%), Positives = 215/439 (48%), Gaps = 35/439 (7%)
Query: 99 RVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTL 158
+VL LS+L +AI + IA A GT I Q E FY+ + NP G +L
Sbjct: 6 QVLNWLSSLKIAILLLLLIAISCAAGTLIPQQESNQFYYDNF-NKNPFLGIINANILLLF 64
Query: 159 GFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTL-- 216
FDH+++S FL LL+ +GL+L C++ Q+P++K A W S I K + T+
Sbjct: 65 EFDHVYTSFWFLFLLIWLGLALSVCSFRRQLPILKSALNWIDYKSPRQIAKLSVAQTIVT 124
Query: 217 --PRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATG 274
S++ + + L G+ V + A +G++GR PI +HL M+L+M G T G
Sbjct: 125 NNCSESLEKIKLNLKKQGWNVKETDGRIAARQGVIGRLGPILIHLGMILLMIGATY---G 181
Query: 275 SFRGSVTVPQGLNFVVGDVLGPNGF--LSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSD 332
S G + L P L + + + KF ++ G +Q+ S
Sbjct: 182 SLNGK---------TIEKFLAPGRSIDLLNNNEEKGLTIELQKFQIERDPQGRAEQYKSI 232
Query: 333 LSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNG 392
+++ + G K ISVN PLRY G+T+YQ DWS +A+ + ++ + + P+ G
Sbjct: 233 VNVIEPNGSN-ESKEISVNYPLRYKGLTLYQADWSLAAITIQIDNSPKLQIPIEPISELG 291
Query: 393 DKKLFGTFLPLGDVNSPNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPID----ID 448
+ +++GT +P + + + +L + IYD +G +KL I+ +
Sbjct: 292 E-QVWGTVIPTNKDGKNQI--LLTVDSELGPVNIYDNDGTLL------TKLSINKEEKVK 342
Query: 449 GTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDG--TSVII 506
G I I++ I S+GL LK DPGVP+VY F +++ +S +S +IW L + + + I
Sbjct: 343 GALINIINIIPSSGLLLKHDPGVPLVYLSFAIILIGGSLSIISTKKIWVLHENEKSMIYI 402
Query: 507 GGKTNRAKAEFPDDMNRLL 525
GG +NR + ++ L+
Sbjct: 403 GGLSNRNLSGLSKELPNLI 421
>sp|Q7V028|CCS1_PROMP Cytochrome c biogenesis protein CcsB OS=Prochlorococcus marinus
subsp. pastoris (strain CCMP1986 / MED4) GN=ccsB PE=3
SV=1
Length = 428
Score = 162 bits (410), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 200/420 (47%), Gaps = 36/420 (8%)
Query: 122 ALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLM 181
+GT I QG Y Y E P+ GF ++ L DH+++S FL L+++ +SL
Sbjct: 29 GVGTFIPQGNDQQEYIDFYNE-TPILGFINGSQVIRLQLDHIYTSNWFLFSLILLCISLA 87
Query: 182 ACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMG------AGYEV 235
AC++ QIP +K A +W+ + K E IQD IL G+ +
Sbjct: 88 ACSFRRQIPSLKAALKWTDYKDEKKFYKLELITNY--EIIQDADHILKADSLLRKKGWNI 145
Query: 236 FLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLG 295
L A KGL G+ PI VH+ +++++ G SA G+F S + Q L LG
Sbjct: 146 SKFENRLSARKGLEGKLGPIIVHIGLIILLIG---SAYGNF-SSQSKEQYLR------LG 195
Query: 296 PNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLR 355
+ L + ++ + F+++ G+ KQF S+L F KT VN P+R
Sbjct: 196 ESLDLINESTNSRVKIKLKNFFIERESDGKPKQFISNLEFFSKQQNLNEIKTTQVNQPIR 255
Query: 356 YGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGIS 415
+ G+TIYQ DWS S + V++ D + L + P+ GD +++G + LG N N
Sbjct: 256 FKGLTIYQADWSVSNI-VMEIDSVLYQLQLKPIPEIGD-QIWGLLIELGRENKKNY---- 309
Query: 416 MLARD-----LQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPG 470
+L D L+ I D F + PI+I+ +K+ + I S+GL +K DP
Sbjct: 310 LLTIDNENGPLKVSNIEDFSENFVYLNNN----PIEINSSKLSLKKIIPSSGLIIKNDPS 365
Query: 471 VPIVYAGFGALMLTTCISFLSHTQIWAL--QDGTSVIIGGKTNRAKAEFPDDMNRLLDRV 528
+P +Y F +++ T +S + QIW L ++ + IGG +NR F + +L D +
Sbjct: 366 IPFIYLSFTLIIVGTILSLIPTNQIWILFNENTNKLFIGGLSNRNLLGFKKEFLKLSDEI 425
>sp|Q3AHI9|CCS1_SYNSC Cytochrome c biogenesis protein CcsB OS=Synechococcus sp. (strain
CC9605) GN=ccsB PE=3 SV=1
Length = 432
Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 119/409 (29%), Positives = 195/409 (47%), Gaps = 21/409 (5%)
Query: 124 GTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMAC 183
GT I QG+ P Y Y D P G +L L DH++SS FL LL +GL+L+ C
Sbjct: 35 GTGIPQGDPPSSYIDAY-SDTPWLGLLHGEQVLQLQLDHVYSSGWFLALLAWLGLALILC 93
Query: 184 TYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLP----RASIQDLGVILMGAGYEVFLKG 239
++ Q P + ARRW + + K +++ P + L +L +G++V K
Sbjct: 94 SWRRQWPALMAARRWIDYRTTRQLSKLAIAESQPCPDTSQGLTQLETVLRASGWQVQRKP 153
Query: 240 PSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGF 299
L A +G +GR P+ VH ++L+M G A R + G + D+L +G
Sbjct: 154 QRLAARRGAIGRVGPLLVHTGLVLLMLGAAWGALAGNRLERFLAPGRSL---DLLDRDG- 209
Query: 300 LSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGI 359
+ +++F +D +G +QF S L L G + + ISVN PLR+ GI
Sbjct: 210 ------TSQLTITLDRFAIDRDPAGRTEQFRSALKL--QGPNQSLDAEISVNHPLRHRGI 261
Query: 360 TIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGISMLAR 419
T+YQ DWS + + + L + GD+ ++G LP + V L
Sbjct: 262 TVYQADWSLATISLQIGRSPVLELPLQTYPELGDQ-IWGLVLPTRPDGTEPV--FLSLES 318
Query: 420 DLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFG 479
+ ++D +G+ RP ++ G + + + ++GL LK DPGVP+VY GF
Sbjct: 319 EQGPATVFDADGQQLARLRPGGP-SAEVKGLPMRVDAVLPASGLLLKRDPGVPLVYLGFA 377
Query: 480 ALMLTTCISFLSHTQIWALQDGTSVIIGGKTNRAKAEFPDDMNRLLDRV 528
L++ +S ++ Q+WA+ ++ +GG NR A F ++ +LL +V
Sbjct: 378 VLLVGGGLSLVATRQLWAIAADGTLSVGGLCNRNLAAFATELPQLLQQV 426
>sp|A8G6W0|CCS1_PROM2 Cytochrome c biogenesis protein CcsB OS=Prochlorococcus marinus
(strain MIT 9215) GN=ccsB PE=3 SV=1
Length = 428
Score = 159 bits (401), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 120/443 (27%), Positives = 219/443 (49%), Gaps = 34/443 (7%)
Query: 98 RRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILT 157
+ ++ +S+L AI + IA +GT I QG FY Y P+FGF +L
Sbjct: 5 KNLILKISSLRFAISLIIFIAITSGIGTFIPQGSDNKFYVDNY-NSAPIFGFLDGEKVLK 63
Query: 158 LGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLP 217
L DH+++S FL L+++ +SL AC++ QIP +K + +W S + K + + + P
Sbjct: 64 LQLDHVYTSFWFLFTLILLCISLAACSFRRQIPSLKASLKWIEYKSEKKFSKLQLNTSHP 123
Query: 218 RAS----IQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSAT 273
I + ++L G++ + + A +GL+G+ P+ VH+ +++++ G SA
Sbjct: 124 INQDGDHISKVDLLLKKRGWKTYKFKSHISARRGLIGKIGPLVVHIGLIILLIG---SAY 180
Query: 274 GSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVN--KFYMDYYDSGEVKQFHS 331
GSF L P L ++ +++ +V F ++ G KQF S
Sbjct: 181 GSFTSQSK---------EQYLLPGESLDLVNESTNSKANVKLVDFSIERESDGIPKQFIS 231
Query: 332 DLSLF--DIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLK 389
L+ + D+ E+ KT VN P+R G+TIYQ DW+ S + VL+ D + L + +
Sbjct: 232 KLNFYSEDLNLNEI--KTAKVNHPIRLKGLTIYQADWAISTV-VLEIDNILYQLQLKEIP 288
Query: 390 VNGDKKLFGTFLPLGDVNSPNVKGISMLARDLQS--IVIYDQEGKFTGVRRPNSKLPIDI 447
G+ +++G + LG N +L D ++ + I + E F+G + P+++
Sbjct: 289 EIGN-QVWGVLVELGSETKNNF----LLTIDNENGPLKISNIEN-FSGENLYLNDDPLEV 342
Query: 448 DGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWAL--QDGTSVI 505
+ +K+ + I S+GL +K DP +P +Y F ++ T IS + Q+W L ++ +
Sbjct: 343 NSSKVSLKKVIPSSGLIIKNDPSIPFIYFSFILIIFGTIISLIPTNQLWILVNKESQKLS 402
Query: 506 IGGKTNRAKAEFPDDMNRLLDRV 528
IGG +N+ F + +L +++
Sbjct: 403 IGGLSNKNLVGFKKEFFKLSEQI 425
>sp|Q7U8Y8|CCS1_SYNPX Cytochrome c biogenesis protein CcsB OS=Synechococcus sp. (strain
WH8102) GN=ccsB PE=3 SV=1
Length = 432
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 143/452 (31%), Positives = 217/452 (48%), Gaps = 35/452 (7%)
Query: 98 RRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILT 157
+R+L LS+L +AI + IA A+GTAI QG+ P Y Y E P G +L
Sbjct: 2 KRLLVWLSDLRVAIVLLLLIALASAVGTAIPQGDPPTSYVDAYAE-TPWLGLLHGEQVLQ 60
Query: 158 LGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTL- 216
L DH++SS FLGLL +GL+L+ C++ Q P ++ ARRW + + K ++T+
Sbjct: 61 LQLDHVYSSGWFLGLLAWLGLALILCSWRRQWPALQAARRWIDYRTPRQLSKLAIAETIT 120
Query: 217 ---PRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSAT 273
A + L +L G+E+ L A KG++GR P+ VH M+L+M G A
Sbjct: 121 CPDAEAGLTQLSAVLQRQGWELKPGLNRLAARKGVIGRVGPLLVHTGMVLLMLGAVWGAL 180
Query: 274 GSFRGSVTVPQGLNFVVGDVLGPNGFLS--TPTDAFSTEVHVNKFYMDYYDSGEVKQFHS 331
R + L P+ L +P + + F ++ +G +QF S
Sbjct: 181 AGNR------------LERFLAPDRTLDLLSPRGDSQLSITLQDFQIERDPAGRPEQFRS 228
Query: 332 DLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVN 391
L+L D E ISVN PLR+ GITIYQ DW+ +A+ V L +
Sbjct: 229 LLALSDSETPE----EISVNHPLRHRGITIYQADWALAAIGVQIGRSPELQLPLQTYPEL 284
Query: 392 GDKKLFGTFLPLGDVNSPNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTK 451
GD+ ++G LP S V L + + +YD +G + RP ++ G
Sbjct: 285 GDQ-VWGLVLPTRPDGSEPV--FLSLESEQGPVSVYDSDGSALTLLRPGGPAE-EVKGLP 340
Query: 452 IVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVIIGGKTN 511
+ + + ++GL LK DPGVP+VY GF L+L +S ++ Q+WA+ + +GG N
Sbjct: 341 LRVASVLPASGLLLKRDPGVPLVYLGFAVLLLGGGLSLVATRQLWAVASDGQLHVGGLCN 400
Query: 512 RAKAEFPDDMNRLLDRV--------PELVESS 535
R A F ++ LL RV P+ V+SS
Sbjct: 401 RNLAAFAQELPLLLQRVVAREQHDSPQSVQSS 432
>sp|Q318T2|CCS1_PROM9 Cytochrome c biogenesis protein CcsB OS=Prochlorococcus marinus
(strain MIT 9312) GN=ccsB PE=3 SV=1
Length = 428
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 116/443 (26%), Positives = 219/443 (49%), Gaps = 34/443 (7%)
Query: 98 RRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILT 157
+ ++ +S+L AI + IA +GT I QG FY + + P+FGF +L
Sbjct: 5 KNLILKISSLRFAISLIIFIAITSGIGTFIPQGNSNKFYIDNF-DSAPIFGFLDGEKVLK 63
Query: 158 LGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLP 217
L DH+++S FL L+++ +SL AC++ QIP +K + +W ++ + K + + + P
Sbjct: 64 LQLDHIYTSIWFLFTLILLCISLSACSFRRQIPSLKASLKWIEYNNEKKFSKLQLTSSHP 123
Query: 218 RAS----IQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSAT 273
I + ++L G++ + + A +GL+G+ P+ VH+ +++++ G SA
Sbjct: 124 INQDGDHISKVDLLLKKRGWKTYKFKSHISARRGLIGKIGPLVVHIGLIVLLLG---SAY 180
Query: 274 GSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVN--KFYMDYYDSGEVKQFHS 331
GSF L P L ++ +++ ++ F ++ G KQF S
Sbjct: 181 GSFTSQSN---------EQYLLPGESLDLVNESTNSKANIKLVNFSIERESDGIPKQFIS 231
Query: 332 DLSLF--DIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLK 389
L+ D+ E+ KT VN P+R+ G+TIYQ DW+ S + VL+ D + L + +
Sbjct: 232 KLNFSSEDLNINEI--KTAKVNHPIRFKGLTIYQADWAISNV-VLEIDNILYQLQLKEIP 288
Query: 390 VNGDKKLFGTFLPLGDVNSPNVKGISMLARDLQS--IVIYDQEGKFTGVRRPNSKLPIDI 447
G+ +++G + LG N +L D ++ + I + E F+G + P+++
Sbjct: 289 EIGN-QVWGVLVELGSETKKNF----LLTIDNENGPLKISNVEN-FSGNNLYINDRPLEV 342
Query: 448 DGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWAL--QDGTSVI 505
+ +K+ + I S+GL +K DP +P +Y F ++ T IS + Q+W ++ +
Sbjct: 343 NSSKVSLKKIIPSSGLIIKNDPSIPFIYFSFILIIFGTIISLIPTNQLWIFVNKESHKLS 402
Query: 506 IGGKTNRAKAEFPDDMNRLLDRV 528
IGG +N+ F + +L + +
Sbjct: 403 IGGLSNKNLVGFKKEFFKLSEEI 425
>sp|A2BT34|CCS1_PROMS Cytochrome c biogenesis protein CcsB OS=Prochlorococcus marinus
(strain AS9601) GN=ccsB PE=3 SV=1
Length = 428
Score = 155 bits (393), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 120/439 (27%), Positives = 216/439 (49%), Gaps = 26/439 (5%)
Query: 98 RRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILT 157
+ ++ +S+L AI + IA +GT I Q FY + + P+FG +L
Sbjct: 5 KNLILKISSLRFAISLIIFIAIASGIGTFIPQDNNNKFYIDNF-DRAPIFGLLDGEKVLK 63
Query: 158 LGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLP 217
L DH+++S FL L+++ +SL AC++ QIP +K + +W S + K + + + P
Sbjct: 64 LQLDHIYTSFWFLFTLILLCISLAACSFRRQIPSLKASLKWIEYKSEKKFSKLQLTRSHP 123
Query: 218 R----ASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSAT 273
I + ++L G++ + + A KGL+G+ P+ VH+ +++++ G SA
Sbjct: 124 INQDGEHISKVDLLLKKKGWKTYKFNSHISARKGLIGKIGPLVVHIGLIVLLIG---SAY 180
Query: 274 GSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDL 333
GSF S + Q L + G+ L L + V + F ++ G KQF S L
Sbjct: 181 GSFT-SQSKEQYL--LPGETLN----LVNESTNSRANVKLVDFSIERESDGVPKQFISKL 233
Query: 334 SLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGD 393
+ KT VN P+R+ G+TIYQ DW+ S + VL+ D + L + + G+
Sbjct: 234 NFSSENLNLNEIKTTKVNHPIRFKGLTIYQADWAISNI-VLEIDNILYQLQLKEIPEIGN 292
Query: 394 KKLFGTFLPLGDVNSPNVKGISMLARDLQS--IVIYDQEGKFTGVRRPNSKLPIDIDGTK 451
+++G + LG N +L D ++ + I + E F+G ++ P++++ +K
Sbjct: 293 -QVWGVLVELGSETKKNY----LLTIDNENGPLKISNIEN-FSGNNLYINEDPLEVNSSK 346
Query: 452 IVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWAL--QDGTSVIIGGK 509
+ + I S+GL +K DP +P +Y F ++ T IS + Q+W L ++ + IGG
Sbjct: 347 VSLKKIIPSSGLIIKNDPSIPFIYFSFILIIFGTIISLIPTNQLWILVNKESQKLSIGGL 406
Query: 510 TNRAKAEFPDDMNRLLDRV 528
+N+ F + +L D +
Sbjct: 407 SNKNLVGFKKEFFKLSDEI 425
>sp|A5GV87|CCS1_SYNR3 Cytochrome c biogenesis protein CcsB OS=Synechococcus sp. (strain
RCC307) GN=ccsB PE=3 SV=1
Length = 434
Score = 155 bits (393), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 128/436 (29%), Positives = 210/436 (48%), Gaps = 19/436 (4%)
Query: 93 VKRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTW 152
+K L + A LS+L +AI + IAA LGTAI QGE FY ++Y + P G
Sbjct: 1 MKSLVLKAAAWLSDLRVAIVLLLLIAACSGLGTAIPQGEPAAFYHERY-DAAPWLGVVNG 59
Query: 153 RWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEF 212
+L+ DH+++S FL LL +GL+L+ C+ Q P ++ + RW + K
Sbjct: 60 NQLLSWELDHLYTSNWFLLLLAWLGLALLLCSLRRQWPALRASLRWLDYTKPRQLSKLAV 119
Query: 213 SDTL----PRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGG 268
+ +L A++ L L G+ V + L A +G++GR P+ VH +++ M G
Sbjct: 120 ATSLDTGDSAAALDQLERQLQQQGWAVRRQQNRLAARRGVIGRVGPLLVHTGLIVFMVGA 179
Query: 269 TLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQ 328
+ A G R + G + ++L P G E+ ++ F + +G +Q
Sbjct: 180 VVGAFGGQRLERFLAPGRSL---ELLNPQG-------DTRLELQLDSFAIQRDPAGRPEQ 229
Query: 329 FHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPL 388
F S L L D G +SVN PLR+ GIT+YQ DW +A+ + L +
Sbjct: 230 FSSQLLLRDGTGAPAQPAAVSVNHPLRHRGITVYQADWGLAAVTMQLGQSPLLQLPLQTF 289
Query: 389 KVNGDKKLFGTFLPLGDVNSPNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDID 448
G++ ++G LP S V + L +L + +Y + + G+ + +I
Sbjct: 290 PELGEQ-VWGLVLPTRPDGSDPV--LLALQSELGPVEVYGADSQQLGLLTVGGE-SQEIL 345
Query: 449 GTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQIWALQDGTSVIIGG 508
G + I D + ++GL +K DPGVP+VYAGF +L +S ++ Q+WA+ + + I G
Sbjct: 346 GLPLRIADVMPASGLLIKRDPGVPLVYAGFAITLLGGGLSLIATRQLWAISESGRLHIAG 405
Query: 509 KTNRAKAEFPDDMNRL 524
NR F D++ +L
Sbjct: 406 LCNRNLVAFADELPKL 421
>sp|O19913|CCS1_CYACA Cytochrome c biogenesis protein ccs1 OS=Cyanidium caldarium GN=ccs1
PE=3 SV=1
Length = 396
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 92/404 (22%), Positives = 178/404 (44%), Gaps = 35/404 (8%)
Query: 95 RLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRW 154
R+ R L +NL +I I + A+GT I Q + +FY Y V G W+
Sbjct: 10 RIFRSCLNLATNLKFSITLFIIICIVSAIGTIIPQDKPKEFYMNTYSLK--VLGMPLWKI 67
Query: 155 ILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSF---------LHSAE 205
I L + +F S +L LL+ + SL C+ +Q P ++ +R LH ++
Sbjct: 68 IQLLSLEKIFYSNFYLILLLCLSFSLFFCSLKSQFPYLRTSRIIKLNNNNPPTSPLHESK 127
Query: 206 AIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIM 265
I+ + + +Q L+ GY++ Y F + + P+ +HL+++LI+
Sbjct: 128 KIKYNNIASKNDSSCVQ-----LVSQGYKI-------YTFDKNLDKAGPLLIHLSLILIL 175
Query: 266 AGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGE 325
G + A F +P + +V+ P + + + F +++ +
Sbjct: 176 LGSAIHAFNDFIAQEMIPIYEVSHIQNVISSGRISKIPQ---TISLKASAFTVEHENEKV 232
Query: 326 VKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAM 385
VKQF ++L++ + G+ + + +SVN PL Y + I+Q DW ++V + +
Sbjct: 233 VKQFITNLAMLNSKGEVLKQGLVSVNHPLVYKQVYIFQMDWKLFGIRVNYGKNKIYEFPV 292
Query: 386 APLKVNGDKKLFGTFLPLGDVNSPNVKGISMLARDLQ-SIVIYDQEGKFTGVRRPNSKLP 444
++ N +++ T + + N + ++ +++ +YD F + + N+ P
Sbjct: 293 QKIEANNEQQWSCT------IPAKNQSKLILIFKNMSDEFYVYDNNQNFLKIGKINT--P 344
Query: 445 IDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCIS 488
I T ++ I TGL +K D + IVY GF L++ I+
Sbjct: 345 QLIRNTYFTVISKISGTGLQIKKDSSINIVYTGFLLLIIGLVIN 388
>sp|P35161|RESB_BACSU Cytochrome c biogenesis protein ResB OS=Bacillus subtilis (strain
168) GN=resB PE=4 SV=1
Length = 542
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 116/483 (24%), Positives = 193/483 (39%), Gaps = 86/483 (17%)
Query: 94 KRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQ------GEVPDFYFQKYPEDNPVF 147
K + ++ S++ + I + A A GT Q G D Y Y E F
Sbjct: 50 KTIIDKIWNFFSSVKVGIWLIVITLAASAFGTIFPQEAYLPPGAQADTY---YKEQYGTF 106
Query: 148 GFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAI 207
G + LGF H++ S +L L+ +G+SL+ C+ IPL + + S +
Sbjct: 107 GQLYY----LLGFHHLYGSWWYLLLIASIGISLVICSLDRVIPLYRALKNQGVRRSPAFL 162
Query: 208 RKQE-FSDT---LPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLL 263
R+Q FS+T L S + + +L Y + K S+ A KG R+ P H+ +++
Sbjct: 163 RRQRLFSETVTVLNGESKEKIVTLLKKKHYRIREKEGSILAEKGRFSRWGPYVNHIGLII 222
Query: 264 IMAGGTLSATGSFRGSVTVPQGLNFVVGD---VLGPNGFLSTPTDAFSTEVH----VNKF 316
+ G L F + V + L G+ + G +G + FS E + K
Sbjct: 223 FLIGAML----RFVPGMYVDETLWVREGETAAIPGTDGKYYLKNNQFSVETYNSKTEKKV 278
Query: 317 YMDYYD---SGEV-KQFHSDLSLFDIGGK----------EVMRKTISVNDPLRYGGITIY 362
+ D D G V K F +D L+ GK +V + I VN PLR+ ++Y
Sbjct: 279 FADAIDRVGDGRVAKNFQTDAVLYKREGKIVYGEKPKLEKVTEEDIRVNQPLRFDSFSVY 338
Query: 363 QTDWSFSALQVLKNDEGPFNL-------AMAPLKV------------NGDKKLFGTFLP- 402
Q D+ + L D+ F L + LK+ NG K ++LP
Sbjct: 339 QVDYKENQL-----DQMVFQLIDKKTKKSFGSLKINLLDPDSVYDLGNGYKVEIASYLPD 393
Query: 403 --LGDVNSPNVK-GISMLARDLQSIVIYDQ---EGKFTGVRRP-----NSKLPIDIDGTK 451
P+ K I + +I+ D+ E F ++ N+K + D
Sbjct: 394 FYFNQDGEPSTKTKIPNNPAFVFNIITPDKPKGEKSFVAIQETIEGSGNNKYKLKFDH-- 451
Query: 452 IVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCIS--FLSHTQIWALQDGTSVIIGGK 509
V+ TGL ++ D + ++ G GA+ + I + H +IW +V++ G
Sbjct: 452 ---VETKNITGLTVRKDLTLWVLAVG-GAIFMIGVIQGMYWQHRRIWLHSQDGAVMVAGH 507
Query: 510 TNR 512
TN+
Sbjct: 508 TNK 510
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,403,362
Number of Sequences: 539616
Number of extensions: 9286739
Number of successful extensions: 21085
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 20856
Number of HSP's gapped (non-prelim): 83
length of query: 545
length of database: 191,569,459
effective HSP length: 122
effective length of query: 423
effective length of database: 125,736,307
effective search space: 53186457861
effective search space used: 53186457861
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)