Query 009058
Match_columns 545
No_of_seqs 190 out of 882
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 19:54:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00177 ccs1 c-type cytochrom 100.0 5.6E-99 1E-103 803.5 46.9 424 94-527 1-425 (426)
2 PF05140 ResB: ResB-like famil 100.0 1.6E-81 3.5E-86 682.0 42.2 399 107-523 1-464 (464)
3 COG1333 ResB ResB protein requ 100.0 2.6E-72 5.6E-77 589.5 25.2 412 107-529 1-460 (478)
4 PRK10369 heme lyase subunit Nr 98.1 9.6E-05 2.1E-09 82.5 17.3 73 250-341 418-490 (571)
5 TIGR00353 nrfE c-type cytochro 97.9 0.00022 4.8E-09 80.0 15.4 77 246-341 421-497 (576)
6 TIGR03145 cyt_nit_nrfE cytochr 97.3 0.002 4.4E-08 73.0 12.1 77 246-341 478-554 (628)
7 COG1138 CcmF Cytochrome c biog 93.3 1.2 2.6E-05 50.8 13.2 60 247-322 487-546 (648)
8 TIGR00351 narI respiratory nit 48.8 11 0.00024 37.7 2.1 27 249-275 46-72 (224)
9 cd00255 nidG2 Nidogen, G2 doma 40.1 2.6E+02 0.0056 28.2 10.1 119 233-355 31-180 (224)
10 COG2181 NarI Nitrate reductase 37.0 19 0.00041 36.2 1.6 26 249-274 45-70 (228)
11 PF11669 WBP-1: WW domain-bind 34.5 33 0.00072 30.1 2.5 25 162-186 17-41 (102)
12 PF12911 OppC_N: N-terminal TM 33.6 19 0.00042 27.4 0.8 33 95-127 3-38 (56)
13 PF07474 G2F: G2F domain; Int 32.2 2.9E+02 0.0063 27.1 8.8 115 240-358 40-184 (192)
14 PF02665 Nitrate_red_gam: Nitr 27.6 37 0.0008 33.9 1.9 25 249-273 44-68 (222)
15 COG2034 Predicted membrane pro 25.4 62 0.0013 27.6 2.5 23 470-492 11-33 (85)
16 PF10808 DUF2542: Protein of u 24.1 66 0.0014 26.8 2.3 25 466-490 48-76 (79)
17 COG1138 CcmF Cytochrome c biog 22.1 92 0.002 36.0 3.9 33 460-492 606-638 (648)
18 PF13829 DUF4191: Domain of un 21.3 1E+02 0.0023 31.0 3.6 22 164-185 49-70 (224)
19 PRK10747 putative protoheme IX 21.1 50 0.0011 35.5 1.5 24 161-184 35-58 (398)
20 PF12751 Vac7: Vacuolar segreg 20.0 56 0.0012 35.3 1.5 35 243-277 293-327 (387)
No 1
>CHL00177 ccs1 c-type cytochrome biogenensis protein; Validated
Probab=100.00 E-value=5.6e-99 Score=803.52 Aligned_cols=424 Identities=39% Similarity=0.749 Sum_probs=394.8
Q ss_pred cchHHHHHHHhcChhHHHHHHHHHHHHhheeEEeecCCCcccccccCCCCCCCccchhHHHHHhhCccccccchHHHHHH
Q 009058 94 KRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLL 173 (545)
Q Consensus 94 ~~~~~~i~~~LsS~klai~LLllLav~siiGTlIpQ~~~~~~y~~~y~~~~p~lG~~~~~~i~~Lgl~~vY~SwWF~~Ll 173 (545)
++|++++|++|+|||+||+||++||++|++||+|||+++.++|.++||++.|++|+.+|+++++|||+|||+||||++|+
T Consensus 1 ~~~~~~~~~~l~Slr~ai~LL~~ia~~s~~GT~i~Q~~~~~~Y~~~yp~~~p~~G~~~~~~~~~LgL~~vY~s~WF~~ll 80 (426)
T CHL00177 1 KNMKQKLLKLLANLKFAIILLLLIAIFSVIGTIIEQDQSIEFYKNNYPLSNPIFGFLSWKIILKLGLDHIYKTWWFLSLL 80 (426)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEccCCCCHHHHHHhccccccccchhHHHHHHhcCCCccccCHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchhhHHHHhhccccccChhhhhccCcccccchhhHHHHHHHHhhcCeEEEeecceEEEecccccchh
Q 009058 174 VMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFA 253 (545)
Q Consensus 174 ~LL~lnLi~Cti~R~~~~~k~~r~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~~gyrv~~~~~~l~A~Kg~~~r~G 253 (545)
+||++||++||++|++|+||.+|+|+++++|+++++++.+.+++.+..+++++.|+++||+|+++++.+||+||+|+|||
T Consensus 81 ~ll~isL~~Cs~~R~~p~lk~~r~~~~~~~~~~l~kl~~~~~~~~~~~~~~~~~L~~~gy~v~~~~~~l~A~KG~~gr~G 160 (426)
T CHL00177 81 LLFGLSLLLCTLLQQLPSLKIARRWQFYTNKNQFKKLQISTNLKKFSLSKLAYKLKSKNYSIFQQGNKIYAYKGLIGRIA 160 (426)
T ss_pred HHHHHHHhheeecccHHHHHHHhcCcccCChhHhhcCccccccchhHHHHHHHHHHHCCeEEEEeCcEEEEecCcchhhh
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhccccceeEEEEEEeCCceeeeccccCCCCCCCCCCCCcceEEEEceEEEEEecCCCceeEEEEE
Q 009058 254 PIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDL 333 (545)
Q Consensus 254 ~~l~HlslllIL~G~llg~l~Gf~g~v~l~eGe~~~~~~~~~~g~~~~~~~~~~pf~i~l~~F~i~yy~~G~p~~f~Sdl 333 (545)
++++|+|||+||+|+++|+++||+|+++++|||++++.++..+|. .+.+++ ++|+||||+++||++|+|+||+|||
T Consensus 161 ~~lvHlslIvIL~Gal~g~l~G~~g~~~i~eGe~~~i~~~~~~g~-~~~l~~---~svrl~~F~i~y~~~g~p~qF~Sdl 236 (426)
T CHL00177 161 PIIVHFSMILILIGSILGALSGFTAQEIIPKTEIFHIQNIISSGQ-LSKIPQ---ESARVNDFWITYTPEKSIKQFYSDL 236 (426)
T ss_pred HHHHHHHHHHHHHHHHHhcccceEEEEEEcCCCceecccccCCCC-ccccCC---cEEEEeeEEEEEcCCCCcceEEEEE
Confidence 999999999999999999999999999999999998877655565 344554 3999999999999999999999999
Q ss_pred EEEecCCceeEEEEEEeCcceEECCeEEEecCCCCceeEEEECCCcceEeeccccccCCCeeEEEEeeeCCCCCCCCCcc
Q 009058 334 SLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKG 413 (545)
Q Consensus 334 si~~~~G~ev~~~~I~VN~PL~y~G~~~YQssyg~~~~~v~~~~~~~~~l~~~~~~~~g~~~~~~~~~P~~~~~~~~~~~ 413 (545)
++.|++|+++.+++|+|||||+|+|++|||+|||.++++++.+++..+++|+.+++.+ ++++|+.++|...+. ..+
T Consensus 237 si~d~~g~e~~~~tI~VN~PL~y~G~~iYQss~~~~~~~v~~~~~~~~~~pl~~~~~~-~~~~~~~~lP~~~~~---~~~ 312 (426)
T CHL00177 237 SILNSEGKEIKRKTISVNHPLKYKGLTIYQTDWNIIGLRIKIGNSKIIQIPLIKIENN-NNKIWLTWIPLNKQN---QSG 312 (426)
T ss_pred EEEcCCCCeeeeEEEEecCCEEECCEEEEEeccccccEEEEeCCCceEEEEeccccCC-CCeeEeeecCCCCCC---Ccc
Confidence 9998889999999999999999999999999999998999988877899999877654 478999999964332 245
Q ss_pred eeEeecCcc-eEEEEcCCCceeeeecCCCCCceeecCeEEEEeeeeeeeEEEEeecCCchHHHHHHHHHHHHHhhhcccc
Q 009058 414 ISMLARDLQ-SIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSH 492 (545)
Q Consensus 414 ~~~~~~d~~-~v~~y~~~g~~~~~~~l~~G~~~~l~g~~v~f~~~~~~TGLqVk~DPGvp~Vy~Gf~LlllGL~isf~~h 492 (545)
+.++.+|.+ .+.+||++|++++...+ |++.++++++++|++..++|||||++|||+|+||+||++||+|+++||++|
T Consensus 313 ~~l~~~d~~~~~~~y~~~g~~~~~~~~--g~~~~~~~~~~~~~~~~~~TGLqi~~dPG~~~vy~G~~ll~lG~~~sy~~~ 390 (426)
T CHL00177 313 LTLVIKDLQGKISLYDNNGNFLGILEL--NEPINLNNTPITLIEIISSTGLQIKSDPGIPIIYVGFFLLMISILISYISY 390 (426)
T ss_pred EEEEEecCCcEEEEEcCCCcEeeEEec--CCcceecceEEEEEEEeecceEEEEcCCCCeehHHHHHHHHHHHheeeecc
Confidence 666778887 68899999999877666 788899999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEcCCEEEEEEecCCCCCccHHHHHHHHHh
Q 009058 493 TQIWALQDGTSVIIGGKTNRAKAEFPDDMNRLLDR 527 (545)
Q Consensus 493 rriWv~~~g~~v~igG~t~r~~~~f~~E~~~l~~~ 527 (545)
||+|++++++++.+||.+||++.+|++||++++++
T Consensus 391 ~~iw~~~~~~~~~~~g~~nr~~~~f~~e~~~~~~~ 425 (426)
T CHL00177 391 SQIWLIQKNNKLYIGGKTNRAKFKFELEFLKIIKQ 425 (426)
T ss_pred eEEEEEEeCCEEEEEeecccchHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999875
No 2
>PF05140 ResB: ResB-like family ; InterPro: IPR007816 This domain is found in a number of known and suspected cytochrome c biogenesis proteins, including ResB []. Mutations in ResB indicate that they are essential for growth []. ResB is predicted to be a transmembrane protein.
Probab=100.00 E-value=1.6e-81 Score=681.99 Aligned_cols=399 Identities=33% Similarity=0.526 Sum_probs=327.1
Q ss_pred hhHHHHHHHHHHHHhheeEEeecCCCcccccccCCCCCCCccchhHHHHHhhCccccccchHHHHHHHHHHHHHHHHhhc
Q 009058 107 LPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYT 186 (545)
Q Consensus 107 ~klai~LLllLav~siiGTlIpQ~~~~~~y~~~y~~~~p~lG~~~~~~i~~Lgl~~vY~SwWF~~Ll~LL~lnLi~Cti~ 186 (545)
||+||+||++||++|+|||+|||+++.++|.++| |+.+++|+++|||+||||||||++|++||++||++||++
T Consensus 1 mklai~Ll~~la~~s~iGt~ipQ~~~~~~y~~~~-------g~~~~~i~~~Lgl~~vy~S~wF~~ll~ll~~sL~~Cs~~ 73 (464)
T PF05140_consen 1 MKLAIFLLLLLAIASIIGTLIPQGQPPEFYQQNY-------GPFWGPIFDRLGLFDVYSSWWFLLLLVLLALSLIACSID 73 (464)
T ss_pred CcHHHHHHHHHHHHHhceeeecCCCcHHHHHHHh-------CchHHHHHHHcCCCceEecHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999 777899999999999999999999999999999999999
Q ss_pred chhhHHHHhhccccccChhhhhccCcccccc-----hhhHHHHHHHHhhcCeEEEeecc----eEEEecccccchhhHHH
Q 009058 187 TQIPLVKVARRWSFLHSAEAIRKQEFSDTLP-----RASIQDLGVILMGAGYEVFLKGP----SLYAFKGLVGRFAPIGV 257 (545)
Q Consensus 187 R~~~~~k~~r~~~~~~~p~~~~~~~~~~~~~-----~~~~~~~~~~L~~~gyrv~~~~~----~l~A~Kg~~~r~G~~l~ 257 (545)
|++++||.+|+++....++.+++++.+.+++ ++..+++++.|+++||||.++++ .+||+||+|++||++++
T Consensus 74 R~~~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gyrv~~~~~~~~~~l~a~kg~~~~~G~~l~ 153 (464)
T PF05140_consen 74 RLPPLWKALRRPPPPKPARFLKRMPLSATFPVPGDPEEALERLAALLKKKGYRVRRQEDGGGVFLYAEKGRWGRWGSLLF 153 (464)
T ss_pred HHHHHHHHHcCCCCCCChhHhhcCCceEEEEcCCChHHHHHHHHHHHHhCCcEEEEecCCCcEEEEEEcCcchhhhHHHH
Confidence 9999999999999988889999999998775 67789999999999999988765 49999999999999999
Q ss_pred HHHHHHHHHhhhccccceeEEEEEEeCCceeeeccccC-CCCCCCCCCCCcceEEEEceEEEEEecCCCceeEEEEEEEE
Q 009058 258 HLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLG-PNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLF 336 (545)
Q Consensus 258 HlslllIL~G~llg~l~Gf~g~v~l~eGe~~~~~~~~~-~g~~~~~~~~~~pf~i~l~~F~i~yy~~G~p~~f~Sdlsi~ 336 (545)
|+|||+||+|+++++++||+|++.++|||+++...... .|.++ ...||+|+||+|+++||++|+|++|+|||++.
T Consensus 154 Hlslivil~G~~~~~~~g~~g~~~l~eG~~~~~~~~~~~~g~~~----~~~~f~i~l~~F~~~~~~~g~~~~~~S~v~i~ 229 (464)
T PF05140_consen 154 HLSLIVILIGALLGSLFGFRGQVMLPEGETFDIPYDSFESGPLF----QPLPFSIRLDDFTIEYYPNGSPKQYASDVTIL 229 (464)
T ss_pred HHHHHHHHHHHHhhcccceeEEEEEecCCccccccccccccccc----cccceEEEEeeEEEEecccccccceEEEEEEE
Confidence 99999999999999999999999999999987654322 33321 34688999999999999999999999999999
Q ss_pred ecCCceeEEEEEEeCcceEECCeEEEecCCCCcee-EEEECCCc-------ceEeec---cccccCCC-----eeEEEEe
Q 009058 337 DIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSAL-QVLKNDEG-------PFNLAM---APLKVNGD-----KKLFGTF 400 (545)
Q Consensus 337 ~~~G~ev~~~~I~VN~PL~y~G~~~YQssyg~~~~-~v~~~~~~-------~~~l~~---~~~~~~g~-----~~~~~~~ 400 (545)
+++|+++.+++|+|||||+|+|++|||+||| ++. +++...+. ...++. ...+..+. ..-...+
T Consensus 230 ~~~~~~~~~~~I~VN~Pl~~~G~~~YQss~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 308 (464)
T PF05140_consen 230 DGGGGEVKRATISVNHPLRYKGYRFYQSSYG-APGFTVTDTSGKLIFDSGQPQFLPQVPGDSISLPGGYQDGYQLQFWDF 308 (464)
T ss_pred cCCCCcceeEEEEecccEEECCEEEEeccCC-CCceEEEecCCcccccccccccccccccceecccccCCCccEEEEEEE
Confidence 9665889999999999999999999999999 763 55543322 122222 11111111 1122345
Q ss_pred eeCCCCC-------CCCCcceeEeecCcceEEEEcCCC--------ceeeeecCCCCCceeecCe---------------
Q 009058 401 LPLGDVN-------SPNVKGISMLARDLQSIVIYDQEG--------KFTGVRRPNSKLPIDIDGT--------------- 450 (545)
Q Consensus 401 ~P~~~~~-------~~~~~~~~~~~~d~~~v~~y~~~g--------~~~~~~~l~~G~~~~l~g~--------------- 450 (545)
+|..... ++.+.+|++. +.++++++ +.+.......+++...+++
T Consensus 309 ~~~~~~~~~g~~~~s~~~~nPa~~------l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (464)
T PF05140_consen 309 FPDFVPNDNGPPSKSPDPNNPAVV------LEVYDGDGGVDGSGEPQNVYFLNVPEGEQIAVGGYNQQAFNLMGLFLLPG 382 (464)
T ss_pred EcccccccCCCcccCCCCCCceEE------EEEECCCCcceeccccceeEEecCcccchhhcccchhhhhcccccccCCC
Confidence 5532211 1233444432 44555432 2222223333344444555
Q ss_pred --EEEEeeee--eeeEEEEeecCCchHHHHHHHHHHHHHhhh-cccceeEEEEEcC----CEEEEEEecCCCCCccHHHH
Q 009058 451 --KIVIVDAI--GSTGLDLKTDPGVPIVYAGFGALMLTTCIS-FLSHTQIWALQDG----TSVIIGGKTNRAKAEFPDDM 521 (545)
Q Consensus 451 --~v~f~~~~--~~TGLqVk~DPGvp~Vy~Gf~LlllGL~is-f~~hrriWv~~~g----~~v~igG~t~r~~~~f~~E~ 521 (545)
+++|++.. +||||||++|||+|+||+||+++|+||+++ |++|||||+++++ ++|++||++|||+.+|++||
T Consensus 383 ~~~v~~~~~~~~~~tGLqV~~DPG~~~V~~G~~llv~Gl~~sfy~~hRRvWv~~~~~~g~~~v~iag~~~k~~~~f~~ef 462 (464)
T PF05140_consen 383 PYRVTFDGFRQRYYTGLQVKKDPGVPIVYLGFILLVVGLFLSFYIRHRRVWVRVEPDGGGTTVEIAGLTNKNKAGFEEEF 462 (464)
T ss_pred ceEEEEEEeccceEEEEEEEeCCCchHHHHHHHHHHHHHHHhheecceEEEEEEEcCCCceEEEEEEecCCchhhhhhhh
Confidence 89998776 899999999999999999999999999999 5899999999986 79999999999999999999
Q ss_pred HH
Q 009058 522 NR 523 (545)
Q Consensus 522 ~~ 523 (545)
++
T Consensus 463 ~~ 464 (464)
T PF05140_consen 463 DR 464 (464)
T ss_pred cC
Confidence 75
No 3
>COG1333 ResB ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-72 Score=589.45 Aligned_cols=412 Identities=29% Similarity=0.445 Sum_probs=324.6
Q ss_pred hhHHHHHHHHHHHHhheeEEeecC---CCcccccccCCCCCCCccchhHHHHHhhCccccccchHHHHHHHHHHHHHHHH
Q 009058 107 LPLAIGEMAAIAALMALGTAIEQG---EVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMAC 183 (545)
Q Consensus 107 ~klai~LLllLav~siiGTlIpQ~---~~~~~y~~~y~~~~p~lG~~~~~~i~~Lgl~~vY~SwWF~~Ll~LL~lnLi~C 183 (545)
||+||+||++||++|++||++||+ ++.+.|..++ |+.+|+|++.|||+|||+||||++|++||++||++|
T Consensus 1 mr~AI~LL~llaiaSi~GTvl~Q~~~N~~~~~y~~~f-------g~~~gq~~~~Lgl~~Vy~SwWfl~iivlL~VSLv~C 73 (478)
T COG1333 1 MRLAIALLLLLAIASIPGTVLPQRGLNQPYPDYYAEF-------GGLWGQWIDQLGLFDVYSSWWFLAIIVLLGVSLVGC 73 (478)
T ss_pred ChhHHHHHHHHHHHhcccceeeccccCCCCcchHHHh-------CchHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhh
Confidence 799999999999999999999995 4444444444 667889999999999999999999999999999999
Q ss_pred hhcchhhHHHHhhccccccChhhhhccCcccccc-----hhhHHHHHHHHhhcCeEEEee-cceEEEecccccchhhHHH
Q 009058 184 TYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLP-----RASIQDLGVILMGAGYEVFLK-GPSLYAFKGLVGRFAPIGV 257 (545)
Q Consensus 184 ti~R~~~~~k~~r~~~~~~~p~~~~~~~~~~~~~-----~~~~~~~~~~L~~~gyrv~~~-~~~l~A~Kg~~~r~G~~l~ 257 (545)
+++|+++.+|++| +++...|+++++++.+.+++ +++.++++..|+++||+++++ +.+++|+||+++|||+|++
T Consensus 74 ~lpr~~~~~ra~r-~~~~~~p~~l~r~~h~~~~~v~~~~~~~~~~i~~~L~~~~~kir~e~~~~i~AeKG~~~r~G~ii~ 152 (478)
T COG1333 74 SLPRFPALYRALR-AKPVRAPRNLARLRHSAELDVKIDPEAVKAKIEKLLRGKGYKIREEGSVSIAAEKGRFSRWGPIIF 152 (478)
T ss_pred cccccHHHHHHhh-cccccCchhHHhhhccCccccCCchHHHHHHHHHHHhcCCeEEEeccceeEEeccccccchhhHHH
Confidence 9999999999877 56689999999999998873 447899999999999999998 6799999999999999999
Q ss_pred HHHHHHHHHhhhcc-ccceeEEEEEEeCCcee-----eeccccCCCCCCCCCCCCcceEEEEceEEEEEecCCCceeEEE
Q 009058 258 HLAMLLIMAGGTLS-ATGSFRGSVTVPQGLNF-----VVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHS 331 (545)
Q Consensus 258 HlslllIL~G~llg-~l~Gf~g~v~l~eGe~~-----~~~~~~~~g~~~~~~~~~~pf~i~l~~F~i~yy~~G~p~~f~S 331 (545)
|++||+||+|++++ .+.|+....+|++||+. ...+.+..|..++. ...+||++++|+|.++|+++|++++|+|
T Consensus 153 HiaLliil~Gal~~~~~~Gm~~~~~V~~Ge~~~~~lpa~~~~fr~g~~~~~-~~l~~f~v~v~rf~~dy~~~g~~~~f~s 231 (478)
T COG1333 153 HIALLIILVGALLDFFYEGMVVGEIVPDGETNCSALPAANDKFRAGPTADG-TILLPFCVRVNRFGIDYLPTGQAYSFAS 231 (478)
T ss_pred HHHHHHHHHHHHHhhcccceeEeEEecCCCcccccccccccccccCCccce-eeeehHHHHHHhcccccccccchhhhcC
Confidence 99999999999999 68899998999999998 22234455553332 2236889999999999999999999999
Q ss_pred EEEEEecCCceeEEEEEEeCcceEECCeEEEecCCCCceeEEEECCCcceEeecc---------c----cc-cCCC-eeE
Q 009058 332 DLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMA---------P----LK-VNGD-KKL 396 (545)
Q Consensus 332 dlsi~~~~G~ev~~~~I~VN~PL~y~G~~~YQssyg~~~~~v~~~~~~~~~l~~~---------~----~~-~~g~-~~~ 396 (545)
|+++.|.+++++.+++|+|||||+|+|++|||++||.++........+..+.|+. . .+ .+|. ..+
T Consensus 232 dI~v~~~~~~~~~~~~IrVN~PLr~~G~~vYq~d~G~~~~~t~~~~~~~~rt~~~~~~~~~~~~~l~~~fd~~~G~~v~i 311 (478)
T COG1333 232 DISVTDGQGEEVAEYTIRVNHPLRYGGVRVYQADYGIAPTFTVTFPLGATRTPTVLWRTDIPQTLLSSVFDPPNGMKVAI 311 (478)
T ss_pred CceEEcCCcceeeeeeEEccCCEeecceEEEEecCccccceeEeccCcccccccccccccccccCccceecCCCcceEEe
Confidence 9999997799999999999999999999999999999885333311111111110 0 11 1222 234
Q ss_pred EEEeeeCCCCCCCCCcceeEeecCcc-eEEEEc-------CCCceee--eecCCCCCceeecC---eEEEEeeeeeeeEE
Q 009058 397 FGTFLPLGDVNSPNVKGISMLARDLQ-SIVIYD-------QEGKFTG--VRRPNSKLPIDIDG---TKIVIVDAIGSTGL 463 (545)
Q Consensus 397 ~~~~~P~~~~~~~~~~~~~~~~~d~~-~v~~y~-------~~g~~~~--~~~l~~G~~~~l~g---~~v~f~~~~~~TGL 463 (545)
+..++|+...... .+++...+|++ ++.++| .++.... ...+.+|+...+++ +.+.|.+...+|||
T Consensus 312 ~g~~~Pt~~~~~~--~~~s~~~k~~~~Pav~~d~~~~~l~~~~~l~~~~rv~~~~g~~~~v~~~~~~~~~~~~~~~ftgl 389 (478)
T COG1333 312 QGLLIPTKQLNGR--NGLSSRFKNLNAPAVIIDIYRGRLTASGPLGEIERVALQAGQEVLVNDGPETKVGFLEAVGFTGL 389 (478)
T ss_pred eccccCceeeccc--ccccccccccCCCEEEeehhhhhcccccccchhhhhhhccCceeeccCCcceeeeccccccccce
Confidence 5567784322110 11222222222 233344 3333222 12445577777765 45888999999999
Q ss_pred EEeecCCchHHHHHHHHHHHHHhhhc-ccceeEEEE-EcC-CEEEEEEecCCCCCc--cHHHHHHHHHhcc
Q 009058 464 DLKTDPGVPIVYAGFGALMLTTCISF-LSHTQIWAL-QDG-TSVIIGGKTNRAKAE--FPDDMNRLLDRVP 529 (545)
Q Consensus 464 qVk~DPGvp~Vy~Gf~LlllGL~isf-~~hrriWv~-~~g-~~v~igG~t~r~~~~--f~~E~~~l~~~l~ 529 (545)
||++|||.|+||.|++++|+|++.++ +.|||+|++ .+| ..|.+||++|+++.+ |+.++.++++.+.
T Consensus 390 qV~~Dp~~~~v~vg~~i~Mvglv~s~~~~~rrvWl~~~~G~~~V~~~G~t~t~~~g~~fe~~~~~~l~~l~ 460 (478)
T COG1333 390 QVSKDPGQPWVYVGGAILMVGLVQSLYWRHRRVWLRSLDGTREVEVGGLTNTDWSGGEFERVLGRELEGLV 460 (478)
T ss_pred eeccCCCCceehHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEeeeecccCccchhhHHHHHHHhhcc
Confidence 99999999999999999999999996 577899999 566 469999999999999 8888888877763
No 4
>PRK10369 heme lyase subunit NrfE; Provisional
Probab=98.11 E-value=9.6e-05 Score=82.48 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=55.1
Q ss_pred cchhhHHHHHHHHHHHHhhhccccceeEEEEEEeCCceeeeccccCCCCCCCCCCCCcceEEEEceEEEEEecCCCceeE
Q 009058 250 GRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQF 329 (545)
Q Consensus 250 ~r~G~~l~HlslllIL~G~llg~l~Gf~g~v~l~eGe~~~~~~~~~~g~~~~~~~~~~pf~i~l~~F~i~yy~~G~p~~f 329 (545)
+++|-++.|+|+.++++|.+.++.+..+..+.+.+||+..++ +++++.++.+.+-.+|- ...
T Consensus 418 ~~~g~~laH~Gval~~~Gi~~ss~~~~e~~~~l~~G~~~~~~----------------~y~~~~~~~~~~~~~n~--~~~ 479 (571)
T PRK10369 418 VQLPALLAHAGVLLFAAGIVVSSVSRQEISLNLQPGQQVTLA----------------GYTFRFERLDLQAKGNY--TSE 479 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccceeEEEEECCCCcEEEe----------------cEEEEEeeeeeccCCCc--eeE
Confidence 468999999999999999999999999999999999987543 23777777765543333 333
Q ss_pred EEEEEEEecCCc
Q 009058 330 HSDLSLFDIGGK 341 (545)
Q Consensus 330 ~Sdlsi~~~~G~ 341 (545)
++++++.+ ||+
T Consensus 480 ~a~~~v~~-~g~ 490 (571)
T PRK10369 480 KAIIALFR-HQQ 490 (571)
T ss_pred EEEEEEEE-CCE
Confidence 46666665 554
No 5
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=97.90 E-value=0.00022 Score=80.04 Aligned_cols=77 Identities=16% Similarity=0.102 Sum_probs=58.7
Q ss_pred cccccchhhHHHHHHHHHHHHhhhccccceeEEEEEEeCCceeeeccccCCCCCCCCCCCCcceEEEEceEEEEEecCCC
Q 009058 246 KGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGE 325 (545)
Q Consensus 246 Kg~~~r~G~~l~HlslllIL~G~llg~l~Gf~g~v~l~eGe~~~~~~~~~~g~~~~~~~~~~pf~i~l~~F~i~yy~~G~ 325 (545)
|...+++|-++.|+|+.++++|.+.++.+..+....+.+||+..++ +|+++.++.+....||..
T Consensus 421 ~~~~~~~g~~laH~Gval~~~Gi~~ss~~~~e~~~~L~pGet~~~~----------------~y~~~y~~~~~~~gpn~~ 484 (576)
T TIGR00353 421 KIKRSQWGMLLAHLGVALTAAGIVFSQNFSVEIDVRLKPGQSVTLG----------------GYTFRFRCVDLEAGPNYT 484 (576)
T ss_pred cCChhhhhhhhhHHHHHHHHHHHHHHcccceeEEEEECCCCcEEEc----------------CEEEEEeeeeecCCCCce
Confidence 3446789999999999999999999999999999999999987542 247888887776555544
Q ss_pred ceeEEEEEEEEecCCc
Q 009058 326 VKQFHSDLSLFDIGGK 341 (545)
Q Consensus 326 p~~f~Sdlsi~~~~G~ 341 (545)
. -++++++.+ ||+
T Consensus 485 a--~~a~~~V~k-~g~ 497 (576)
T TIGR00353 485 G--EKAIIDVTK-DGQ 497 (576)
T ss_pred E--EEEEEEEEE-CCE
Confidence 3 336666654 554
No 6
>TIGR03145 cyt_nit_nrfE cytochrome c nitrate reductase biogenesis protein NrfE. Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.
Probab=97.28 E-value=0.002 Score=73.02 Aligned_cols=77 Identities=13% Similarity=0.072 Sum_probs=57.8
Q ss_pred cccccchhhHHHHHHHHHHHHhhhccccceeEEEEEEeCCceeeeccccCCCCCCCCCCCCcceEEEEceEEEEEecCCC
Q 009058 246 KGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGE 325 (545)
Q Consensus 246 Kg~~~r~G~~l~HlslllIL~G~llg~l~Gf~g~v~l~eGe~~~~~~~~~~g~~~~~~~~~~pf~i~l~~F~i~yy~~G~ 325 (545)
|...+++|-++.|+|+.++++|.+.++.+..+-++.+.+||+..++ +|+++.++.+..-.||-.
T Consensus 478 ~~~~~~~G~~laH~Gval~~~Gi~~ss~~~~e~~~~l~~Ge~~~~~----------------~y~~~~~~~~~~~~pn~~ 541 (628)
T TIGR03145 478 TLKLRQLGMVLAHLGVAICAIGAIMVSYFGSEIGVRLAPQQQQPLG----------------GYEFRYQGFENVIGPNYT 541 (628)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhccccceeEEEECCCCeEEEc----------------CEEEEEeeceecCCCCce
Confidence 3446789999999999999999999999999999999999987543 236777776665444433
Q ss_pred ceeEEEEEEEEecCCc
Q 009058 326 VKQFHSDLSLFDIGGK 341 (545)
Q Consensus 326 p~~f~Sdlsi~~~~G~ 341 (545)
..++++++.+ ||+
T Consensus 542 --~~~a~~~v~~-~g~ 554 (628)
T TIGR03145 542 --AEQANFSVTK-NGK 554 (628)
T ss_pred --eEEEEEEEEE-CCE
Confidence 3445777765 554
No 7
>COG1138 CcmF Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=1.2 Score=50.77 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=50.0
Q ss_pred ccccchhhHHHHHHHHHHHHhhhccccceeEEEEEEeCCceeeeccccCCCCCCCCCCCCcceEEEEceEEEEEec
Q 009058 247 GLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYD 322 (545)
Q Consensus 247 g~~~r~G~~l~HlslllIL~G~llg~l~Gf~g~v~l~eGe~~~~~~~~~~g~~~~~~~~~~pf~i~l~~F~i~yy~ 322 (545)
-..+.+|..+.|++++++++|++++..++.+-.+.+.+|++..+.+ +++++++++.+-.|
T Consensus 487 ~~~s~~g~~LaH~Gv~l~~~Gi~~s~~~~~E~~v~l~~G~~~~l~~----------------y~~~~~~~~~~~gp 546 (648)
T COG1138 487 LKRSAWGMVLAHLGVALIAVGIAMSSTYRYEREVRLRPGQSVTLAG----------------YTFTLDDVDIAQGP 546 (648)
T ss_pred CChhHHHHHHHHhhHHHhhhhhheehhhhheeeEEecCCceEEeee----------------EEEEEeeeeeccCC
Confidence 3456799999999999999999999999999999999999876532 36788888776544
No 8
>TIGR00351 narI respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160).
Probab=48.78 E-value=11 Score=37.69 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=23.4
Q ss_pred ccchhhHHHHHHHHHHHHhhhccccce
Q 009058 249 VGRFAPIGVHLAMLLIMAGGTLSATGS 275 (545)
Q Consensus 249 ~~r~G~~l~HlslllIL~G~llg~l~G 275 (545)
+-+||+.++|.|++++++|.++|-+.-
T Consensus 46 ~l~~gs~lFH~gil~v~~gH~~g~l~p 72 (224)
T TIGR00351 46 GMNLASNLFHIGILGIFVGHFFGMLTP 72 (224)
T ss_pred cHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence 567999999999999999999876543
No 9
>cd00255 nidG2 Nidogen, G2 domain; Nidogen is an important component of the basement membrane, an extracellular sheet-like matrix. Nidogen is a multifunctional protein that interacts with many other basement membrane proteins, like collagen, perlecan, lamin, and has a potential role in the assembly and connection of networks. Nidogen consists of 3 globular domains (G1-G3), G3 is the lamin-binding domain, while G2 binds collagen IV and perlecan. Also found in hemicentin, a protein which functions at various cell-cell and cell-matrix junctions and might assist in refining broad regions of cell contact into oriented, line-shaped junctions. Nidogen G2 consists of an N-terminal EGF-like domain (excluded from this alignment model) and an 11-stranded beta-barrel with a central helix, a topology that exhibits high structural similarity to the green flourescent proteins of Cnidaria.
Probab=40.08 E-value=2.6e+02 Score=28.19 Aligned_cols=119 Identities=18% Similarity=0.153 Sum_probs=65.5
Q ss_pred eEEEeecceEEEecccccchhhHHHHHHHHHHHHhhhccc--------------cceeEEEEEEeC-Cceeeecccc---
Q 009058 233 YEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSA--------------TGSFRGSVTVPQ-GLNFVVGDVL--- 294 (545)
Q Consensus 233 yrv~~~~~~l~A~Kg~~~r~G~~l~HlslllIL~G~llg~--------------l~Gf~g~v~l~e-Ge~~~~~~~~--- 294 (545)
|-|..++....|-...-..+|+-+-=+.-+.-.+|.+..- .|-.+.++.... ||.+.+...+
T Consensus 31 yVv~~dGR~ytais~ip~~~G~~L~~l~~ig~~igWlFA~e~~~~~NGfslTGG~F~~~~~v~F~~~ge~l~I~Q~~~Gl 110 (224)
T cd00255 31 YVVTSDGRAYTAISNIPESLGPSLRPLAPIGGTIGWLFALEQGGAKNGFSLTGGEFTRQAEVTFYTGGEKLRITQVARGL 110 (224)
T ss_pred EEEecCCeEEEEEecCChHhchhhhhhhhhcCceeeEEEeecCCccCcEeccCceEEEEEEEEEcCCCEEEEEEEEEecc
Confidence 5555566666676666666666665444444444433310 122334455555 7777664321
Q ss_pred -----------CCCCCCCCCCCCcceEEEEceEEEEEecC--CCceeEEEEEEEEecCCceeEEEEEEeCcceE
Q 009058 295 -----------GPNGFLSTPTDAFSTEVHVNKFYMDYYDS--GEVKQFHSDLSLFDIGGKEVMRKTISVNDPLR 355 (545)
Q Consensus 295 -----------~~g~~~~~~~~~~pf~i~l~~F~i~yy~~--G~p~~f~Sdlsi~~~~G~ev~~~~I~VN~PL~ 355 (545)
-+|. .-.+|. +.+|++++++-+|.-. |....+.|..-.++++| +.....-.+||=..
T Consensus 111 D~~~~L~~~~~i~G~-vP~i~~--~a~v~i~dY~E~Y~~t~pg~l~s~str~~~v~~~~-~~~~~~y~~~Q~I~ 180 (224)
T cd00255 111 DSHGHLLLDTVISGR-VPQVPA--GATVHIEDYTELYHYTGPGVLTSSSTREYTVDEGG-ESQTLSYQWNQTIT 180 (224)
T ss_pred CccCeEEEEEEEEee-cCCCCC--CCeEEeCCCeeeEEEcCCCEEEEEEeeEEEEecCC-CceEEeEEeeeEEE
Confidence 1233 223444 4599999999998543 67788888766665333 33444444444443
No 10
>COG2181 NarI Nitrate reductase gamma subunit [Energy production and conversion]
Probab=36.96 E-value=19 Score=36.16 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=23.2
Q ss_pred ccchhhHHHHHHHHHHHHhhhccccc
Q 009058 249 VGRFAPIGVHLAMLLIMAGGTLSATG 274 (545)
Q Consensus 249 ~~r~G~~l~HlslllIL~G~llg~l~ 274 (545)
+-++|+.++|.|++++++|..+|-+.
T Consensus 45 ~L~~gs~lFH~GIl~v~~gH~~gll~ 70 (228)
T COG2181 45 GLWIGSNLFHIGILLVLLGHAIGLLT 70 (228)
T ss_pred ceeecCchHHHHHHHHHHHHHhheeC
Confidence 55699999999999999999998765
No 11
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=34.55 E-value=33 Score=30.12 Aligned_cols=25 Identities=16% Similarity=0.176 Sum_probs=18.1
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhc
Q 009058 162 HMFSSPIFLGLLVMMGLSLMACTYT 186 (545)
Q Consensus 162 ~vY~SwWF~~Ll~LL~lnLi~Cti~ 186 (545)
..|..|||.++++++.+-..+|+..
T Consensus 17 ~~~~~w~FWlv~~liill~c~c~~~ 41 (102)
T PF11669_consen 17 YYYELWYFWLVWVLIILLSCCCACR 41 (102)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999877776655566653
No 12
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=33.60 E-value=19 Score=27.39 Aligned_cols=33 Identities=12% Similarity=0.035 Sum_probs=22.9
Q ss_pred chHHHHHHHhcChhHHHH---HHHHHHHHhheeEEe
Q 009058 95 RLPRRVLAALSNLPLAIG---EMAAIAALMALGTAI 127 (545)
Q Consensus 95 ~~~~~i~~~LsS~klai~---LLllLav~siiGTlI 127 (545)
.+++.+|+.|.+-|+|++ +++++.+++++|.++
T Consensus 3 s~~~~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~ 38 (56)
T PF12911_consen 3 SPWKDAWRRFRRNKLAVIGLIILLILVLLAIFAPFI 38 (56)
T ss_pred CHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHc
Confidence 567888999888887765 455555666677554
No 13
>PF07474 G2F: G2F domain; InterPro: IPR006605 Basement membranes are sheet-like extracellular matrices found at the basal surfaces of epithelia and condensed mesenchyma. By preventing cell mixing and providing a cell-adhesive substrate, they play crucial roles in tissue development and function. Basement menbranes are composed of an evolutionarily ancient set of large glycoproteins, which includes members of the laminin family, collagen IV, perlecan and nidogen/entactin. Nidogen/entactin is an important basement membrane component, which promotes cell attachment, neutrophil chemotaxis, trophoblast outgrowth, and angiogenesis. It consists of three globular regions, G1-G3. G1 and G2 are connected by a thread-like structure, whereas that between G2 and G3 is rod-like [, ]. The nidogen G2 region binds to collagen IV and perlecan. The nidogen G2 structure is composed of two domains, an N-terminal EGF-like domain and a much larger beta-barrel domain of ~230 residues. The nidogen G2 beta-barrel consists of an 11-stranded beta-barrel of complex topology, the interior of which is traversed by the hydrophobic, predominantly alpha helical segment connecting strands C and D. The N-terminal half of the barrel comprises two beta-meanders (strands A-C and D-F) linked by the buried alpha-helical segment. The polypeptide chain then crosses the bottom of the barrel and forms a five-stranded Greek key motif in the C- terminal half of the domain. Helix alpha3 caps the top of the barrel and forms the interface to the EGF-like domain. The nidogen G2 beta-barrel domain has unexpected structural similarity to green fluorescent protein, suggesting that they derive from a common ancestor. A large surface patch on the barrel surface is strikingly conserved in all metazoan nidogens. Site-directed mutagenesis demonstrates that the conserved residues in the conserved patch are involved in the binding of perlecan, and possibly also of collagen IV [].; PDB: 1GL4_A 1H4U_A.
Probab=32.15 E-value=2.9e+02 Score=27.15 Aligned_cols=115 Identities=13% Similarity=0.156 Sum_probs=62.2
Q ss_pred ceEEEecccccchhhHHHHHHHHHHHHhhhccc--------------cceeEEEEEEeCCceeeecccc---C-------
Q 009058 240 PSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSA--------------TGSFRGSVTVPQGLNFVVGDVL---G------- 295 (545)
Q Consensus 240 ~~l~A~Kg~~~r~G~~l~HlslllIL~G~llg~--------------l~Gf~g~v~l~eGe~~~~~~~~---~------- 295 (545)
..-.|-...-..+|+.+-=+..++-.+|.++.. .|-.+.++....||.+.+...+ +
T Consensus 40 r~ytaIs~IP~~~G~~l~~L~~ig~~igWlfA~e~~~a~NGfslTGG~F~~~s~v~F~tGe~l~itq~~~GlD~~~~L~~ 119 (192)
T PF07474_consen 40 RAYTAISNIPPSVGPSLRPLVPIGGPIGWLFAKEQGGAQNGFSLTGGEFNRESEVEFATGERLTITQTARGLDSDGYLLL 119 (192)
T ss_dssp EEEEEEES--CCCCGGGTT-THHHHHHHHHT-EE-TT---HHHHHTTEEEEEEEEEESSS--EEEEEEEEEE-TTS-EEE
T ss_pred EEEEEeecCChHHhhhhhHHHHhhhheeeeEEeccCCccCceeeeccEEEEEEEEEEeCCCEEEEEEEecccCCCCcEEE
Confidence 344455556666777777777777777665432 3555667777889887665321 1
Q ss_pred ----CCCCCCCCCCCcceEEEEceEEEEEec--CCCceeEEEEEEEEecCCceeEEEEEEeCcceEECC
Q 009058 296 ----PNGFLSTPTDAFSTEVHVNKFYMDYYD--SGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGG 358 (545)
Q Consensus 296 ----~g~~~~~~~~~~pf~i~l~~F~i~yy~--~G~p~~f~Sdlsi~~~~G~ev~~~~I~VN~PL~y~G 358 (545)
+|. .-.++. ..+|++++|+-+|-. .|....+.+.--..+.+| +.....-.+||-+.|+.
T Consensus 120 d~~i~G~-vP~i~~--~a~v~i~dy~E~Y~~tgpg~l~s~Str~~~~~~~~-~~~~~~y~~~qtI~Y~~ 184 (192)
T PF07474_consen 120 DTVISGQ-VPQIPA--GADVHIQDYTEEYVQTGPGQLTSSSTREFTVDGGG-SSRTISYRWNQTITYDE 184 (192)
T ss_dssp EEEEEEE-E----T--T-EEE---EEEEEEEE-TTEEEEEEEEEEEEE-----EEEEEEEEEEEEE---
T ss_pred EEEEecc-CCCCCC--CCeEEeCChhheeEEecCCcEEEEEEEEEEEcCCC-ceEEEEEEEEEEEEEcc
Confidence 122 112343 349999999999843 578888877766666444 56778888999888764
No 14
>PF02665 Nitrate_red_gam: Nitrate reductase gamma subunit; InterPro: IPR003816 The nitrate reductase enzyme (1.7.99.4 from EC) is composed of three subunits; an alpha, a beta and two gamma. It is the second nitrate reductase enzyme which it can substitute for the NRA enzyme in Escherichia coli allowing it to use nitrate as an electron acceptor during anoerobic respiration []. Nitrate reductase gamma subunit resembles cytochrome b and transfers electrons from quinones to the beta subunit [].; GO: 0008940 nitrate reductase activity, 0055114 oxidation-reduction process, 0009325 nitrate reductase complex; PDB: 1Y5L_C 3IR5_C 1Y5I_C 1Y5N_C 1Y4Z_C 3IR6_C 3IR7_C 1SIW_C 3EGW_C 1Q16_C.
Probab=27.63 E-value=37 Score=33.88 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=21.5
Q ss_pred ccchhhHHHHHHHHHHHHhhhcccc
Q 009058 249 VGRFAPIGVHLAMLLIMAGGTLSAT 273 (545)
Q Consensus 249 ~~r~G~~l~HlslllIL~G~llg~l 273 (545)
+-+||.+++|.|++++++|.+++.+
T Consensus 44 ~L~~~s~lfH~Gil~v~~gH~~gll 68 (222)
T PF02665_consen 44 WLWWGSYLFHWGILLVFFGHVVGLL 68 (222)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehHHHHHHHHHHHHHHHHHHHh
Confidence 5569999999999999999887654
No 15
>COG2034 Predicted membrane protein [Function unknown]
Probab=25.41 E-value=62 Score=27.63 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.3
Q ss_pred CchHHHHHHHHHHHHHhhhcccc
Q 009058 470 GVPIVYAGFGALMLTTCISFLSH 492 (545)
Q Consensus 470 Gvp~Vy~Gf~LlllGL~isf~~h 492 (545)
|..++++||.+..+|+.+.++++
T Consensus 11 g~~li~iGf~LifLGi~l~~~~~ 33 (85)
T COG2034 11 GLILIFIGFLLIFLGIVLPAFSP 33 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCC
Confidence 67889999999999999987754
No 16
>PF10808 DUF2542: Protein of unknown function (DUF2542) ; InterPro: IPR020155 This entry represents transmembrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=24.08 E-value=66 Score=26.82 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=19.5
Q ss_pred eecCCchH----HHHHHHHHHHHHhhhcc
Q 009058 466 KTDPGVPI----VYAGFGALMLTTCISFL 490 (545)
Q Consensus 466 k~DPGvp~----Vy~Gf~LlllGL~isf~ 490 (545)
.+||++.| +|+||..+.+|+.+.++
T Consensus 48 ~~~P~~ywsYi~~Y~G~gil~~gm~Iyll 76 (79)
T PF10808_consen 48 AKNPGQYWSYIFAYFGCGILSLGMIIYLL 76 (79)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHhheeE
Confidence 46777765 67899999999998753
No 17
>COG1138 CcmF Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=22.09 E-value=92 Score=36.00 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=29.3
Q ss_pred eeEEEEeecCCchHHHHHHHHHHHHHhhhcccc
Q 009058 460 STGLDLKTDPGVPIVYAGFGALMLTTCISFLSH 492 (545)
Q Consensus 460 ~TGLqVk~DPGvp~Vy~Gf~LlllGL~isf~~h 492 (545)
+.-.++..+|.+-+||+|.++|++|-+++.+.+
T Consensus 606 ~~~~r~~~kP~V~~IW~G~llma~Ggll~l~d~ 638 (648)
T COG1138 606 AWAVRLYYKPFVRWIWIGGLLMALGGLLSLSDR 638 (648)
T ss_pred eEEEEEEecchHHHHHHHHHHHHHhHHHHhccc
Confidence 456788999999999999999999999997754
No 18
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=21.31 E-value=1e+02 Score=30.96 Aligned_cols=22 Identities=18% Similarity=0.042 Sum_probs=14.7
Q ss_pred ccchHHHHHHHHHHHHHHHHhh
Q 009058 164 FSSPIFLGLLVMMGLSLMACTY 185 (545)
Q Consensus 164 Y~SwWF~~Ll~LL~lnLi~Cti 185 (545)
+.+|||.+++++++.-|++-.+
T Consensus 49 ~~~~~~~~i~gi~~g~l~am~v 70 (224)
T PF13829_consen 49 FGSWWYWLIIGILLGLLAAMIV 70 (224)
T ss_pred HccHHHHHHHHHHHHHHHHHHH
Confidence 3489998888766655555444
No 19
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=21.11 E-value=50 Score=35.47 Aligned_cols=24 Identities=8% Similarity=0.207 Sum_probs=14.5
Q ss_pred cccccchHHHHHHHHHHHHHHHHh
Q 009058 161 DHMFSSPIFLGLLVMMGLSLMACT 184 (545)
Q Consensus 161 ~~vY~SwWF~~Ll~LL~lnLi~Ct 184 (545)
..|=+|.|+.++++++++-++.+.
T Consensus 35 ~~ie~sl~~~~~~~~~~~~~~~~~ 58 (398)
T PRK10747 35 YNIETSVTGLAIILILAMVVLFAI 58 (398)
T ss_pred EEEEehHHHHHHHHHHHHHHHHHH
Confidence 346678888776665555444443
No 20
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=20.00 E-value=56 Score=35.33 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=29.7
Q ss_pred EEecccccchhhHHHHHHHHHHHHhhhccccceeE
Q 009058 243 YAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFR 277 (545)
Q Consensus 243 ~A~Kg~~~r~G~~l~HlslllIL~G~llg~l~Gf~ 277 (545)
+-+|+.|.|++..+++.-|+++++|+++|.+++-.
T Consensus 293 ~r~r~~~~r~~~c~~~~i~~lL~ig~~~gFv~Att 327 (387)
T PF12751_consen 293 YRQRSWFSRFASCIYLSILLLLVIGFAIGFVFATT 327 (387)
T ss_pred hccccHHhhhhHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 45688999999999999999999999999876543
Done!