Query 009058
Match_columns 545
No_of_seqs 190 out of 882
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 17:52:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009058.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009058hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_X Photosystem I subunit P 21.1 65 0.0022 21.7 2.4 23 160-185 7-29 (35)
2 2c6a_A Ubiquitin-protein ligas 20.2 22 0.00076 25.8 0.0 17 24-40 21-37 (46)
3 1gl4_A Nidogen-1, entactin; im 18.3 4.1E+02 0.014 26.3 8.8 117 238-357 84-234 (285)
4 3j1r_A Archaeal adhesion filam 9.8 1.9E+02 0.0064 18.3 2.2 15 108-122 4-18 (26)
5 2cr8_A MDM4 protein; ZF-ranbp 8.7 76 0.0026 23.5 0.1 16 24-39 19-34 (53)
6 3mhp_C TIC62_peptide, ferredox 6.8 1.7E+02 0.0057 18.5 1.0 11 3-13 14-24 (26)
7 1q16_C Cytochrome B-NR, respir 6.7 1.9E+02 0.0066 27.0 2.0 24 249-272 47-70 (225)
8 3vou_A ION transport 2 domain 6.3 5.2E+02 0.018 22.2 4.5 30 157-186 66-99 (148)
9 2k21_A Potassium voltage-gated 5.7 2E+02 0.0067 25.3 1.2 24 472-495 57-80 (138)
10 1xrd_A LH-1, light-harvesting 5.6 2E+02 0.0069 21.3 1.0 29 467-495 8-38 (52)
No 1
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=21.09 E-value=65 Score=21.72 Aligned_cols=23 Identities=9% Similarity=0.304 Sum_probs=16.5
Q ss_pred ccccccchHHHHHHHHHHHHHHHHhh
Q 009058 160 FDHMFSSPIFLGLLVMMGLSLMACTY 185 (545)
Q Consensus 160 l~~vY~SwWF~~Ll~LL~lnLi~Cti 185 (545)
...+|++-|.+ +||++|.++.-+
T Consensus 7 p~y~frt~Wal---llLaINflVAay 29 (35)
T 1jb0_X 7 PTYAFRTFWAV---LLLAINFLVAAY 29 (35)
T ss_dssp CCCCHHHHHHH---HHHHHHHHHHHH
T ss_pred CCccHHHHHHH---HHHHHHHHHHHH
Confidence 35688888987 667888776543
No 2
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=20.15 E-value=22 Score=25.77 Aligned_cols=17 Identities=41% Similarity=0.726 Sum_probs=15.1
Q ss_pred ccCcchhhhccccccce
Q 009058 24 TFNPQLHTLFNRCITLS 40 (545)
Q Consensus 24 ~~~~~~~~~~~~~~~~~ 40 (545)
+|||-++..|+||-.|+
T Consensus 21 ~~N~Pl~r~C~rCw~LR 37 (46)
T 2c6a_A 21 EMNPPLPSHCNRCWALR 37 (46)
T ss_dssp CEECSSCSSCTTTCCCC
T ss_pred ccCCCccchhhHHHhhc
Confidence 89999999999998554
No 3
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=18.26 E-value=4.1e+02 Score=26.27 Aligned_cols=117 Identities=12% Similarity=0.051 Sum_probs=65.0
Q ss_pred ecceEEEecccccchhhHHHHHHHHHHHHhhhcc--------------ccceeEEEEEEeCC-ceeeecccc---C----
Q 009058 238 KGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLS--------------ATGSFRGSVTVPQG-LNFVVGDVL---G---- 295 (545)
Q Consensus 238 ~~~~l~A~Kg~~~r~G~~l~HlslllIL~G~llg--------------~l~Gf~g~v~l~eG-e~~~~~~~~---~---- 295 (545)
++....|-...-..+|+-+.=+.-++-.+|.++. ..|-.+.++....| |.+.+...+ +
T Consensus 84 dgr~ytais~Ip~~~G~~l~~L~~ig~~igWlfA~e~~~~~NGfslTgG~F~r~s~v~F~~g~e~l~i~q~~~GlD~~g~ 163 (285)
T 1gl4_A 84 HGRSYTAISTIPETVGYSLLPLAPIGGIIGWMFAVEQDGFKNGFSITGGEFTRQAEVTFLGHPGKLVLKQQFSGIDEHGH 163 (285)
T ss_dssp TCEEEEEEESCCHHHHGGGTTCTHHHHHHHHHTCEECTTCCCHHHHHTTEEEEEEEEEETTSSSCEEEEEEEECBCTTSC
T ss_pred CCeEEEEeccCChhhchhhhhhhhhccceeeeeecccCccccceEeeCceEEEEEEEEEcCCCeEEEEEEEEEccCcCCc
Confidence 3444556666666677777666666666766553 22333344454556 565554321 1
Q ss_pred -------CCCCCCCCCCCcceEEEEceEEEEEe-cCCCceeEEEEEEEEecC---C-ceeEEEEEEeCcceEEC
Q 009058 296 -------PNGFLSTPTDAFSTEVHVNKFYMDYY-DSGEVKQFHSDLSLFDIG---G-KEVMRKTISVNDPLRYG 357 (545)
Q Consensus 296 -------~g~~~~~~~~~~pf~i~l~~F~i~yy-~~G~p~~f~Sdlsi~~~~---G-~ev~~~~I~VN~PL~y~ 357 (545)
+|. .-.++. ..+|++++|+-+|- ..|....+.+..-.++.+ | .........+||-+.|+
T Consensus 164 L~~~~~i~G~-vP~i~~--~~~v~i~dy~E~Y~~~~g~l~s~str~~~~~~~~~~g~~~~~~~~y~~~qtI~y~ 234 (285)
T 1gl4_A 164 LTISTELEGR-VPQIPY--GASVHIEPYTELYHYSSSVITSSSTREYTVMEPDQDGAAPSHTHIYQWRQTITFQ 234 (285)
T ss_dssp EECEEEEEEE-ECCCCT--TCEEECCCEEEEEEEETTEEEEEEEEEEEEECCSSTTCCCCEEEEEEEEEEEECC
T ss_pred EEEEEEEeee-cCCCCC--CCeeecCCcceEEEEcCCEEEEEeeeeEEeccccccCcccceeEeEEEeeEEEec
Confidence 122 123343 44999999999883 356777777765444422 2 12245566677766654
No 4
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=9.83 E-value=1.9e+02 Score=18.31 Aligned_cols=15 Identities=27% Similarity=0.078 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHhh
Q 009058 108 PLAIGEMAAIAALMA 122 (545)
Q Consensus 108 klai~LLllLav~si 122 (545)
-.|..||+++|++++
T Consensus 4 iVA~~lLIviav~aa 18 (26)
T 3j1r_A 4 VIATLLLILIAVAAA 18 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 357778888877754
No 5
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=8.74 E-value=76 Score=23.50 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=14.4
Q ss_pred ccCcchhhhccccccc
Q 009058 24 TFNPQLHTLFNRCITL 39 (545)
Q Consensus 24 ~~~~~~~~~~~~~~~~ 39 (545)
+|||-++.-|.||-.|
T Consensus 19 k~N~Pl~ryC~rCwaL 34 (53)
T 2cr8_A 19 KFNSPSKRYCFRCWAL 34 (53)
T ss_dssp CEECSSCCBCTTTCCB
T ss_pred ccCCCccchhHHHHHh
Confidence 8999999999999944
No 6
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=6.77 E-value=1.7e+02 Score=18.54 Aligned_cols=11 Identities=55% Similarity=0.984 Sum_probs=8.8
Q ss_pred CCCCCCCCccc
Q 009058 3 TLKPPTLPTRT 13 (545)
Q Consensus 3 ~~~~~~~~~~~ 13 (545)
.||||+-|+-+
T Consensus 14 dlKPPsSPsPs 24 (26)
T 3mhp_C 14 DLKPPSSPSPT 24 (26)
T ss_dssp TSSCSSCSSCC
T ss_pred ccCCCCCCCCC
Confidence 58999998754
No 7
>1q16_C Cytochrome B-NR, respiratory nitrate reductase 1 gamma chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: f.21.3.1 PDB: 1siw_C* 1y4z_C* 3ir5_C* 3ir6_C* 3ir7_C* 1y5l_C* 1y5i_C* 1y5n_C* 3egw_C*
Probab=6.69 E-value=1.9e+02 Score=26.99 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=19.7
Q ss_pred ccchhhHHHHHHHHHHHHhhhccc
Q 009058 249 VGRFAPIGVHLAMLLIMAGGTLSA 272 (545)
Q Consensus 249 ~~r~G~~l~HlslllIL~G~llg~ 272 (545)
+.++++.++|.+++++++|.+.+.
T Consensus 47 ~l~~~~~l~H~~il~l~~g~~~~~ 70 (225)
T 1q16_C 47 GMNLASNLFHIGILGIFVGHFFGM 70 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345699999999999999988654
No 8
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=6.28 E-value=5.2e+02 Score=22.19 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=17.2
Q ss_pred hhCcccccc----chHHHHHHHHHHHHHHHHhhc
Q 009058 157 TLGFDHMFS----SPIFLGLLVMMGLSLMACTYT 186 (545)
Q Consensus 157 ~Lgl~~vY~----SwWF~~Ll~LL~lnLi~Cti~ 186 (545)
+.|..|++- .-.|..+++++++-+++..+.
T Consensus 66 TvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~ 99 (148)
T 3vou_A 66 TVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIH 99 (148)
T ss_dssp TCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 567666653 244556666666665555444
No 9
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=5.70 E-value=2e+02 Score=25.32 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHhhhcccceeE
Q 009058 472 PIVYAGFGALMLTTCISFLSHTQI 495 (545)
Q Consensus 472 p~Vy~Gf~LlllGL~isf~~hrri 495 (545)
-+|-.-|..+++|++++|++.+|.
T Consensus 57 L~vmgffgff~~GImLsYiRSKk~ 80 (138)
T 2k21_A 57 LMVLGFFGFFTLGIMLSYIRSKKL 80 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhc
Confidence 455556677888999999865544
No 10
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=5.59 E-value=2e+02 Score=21.28 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=23.0
Q ss_pred ecCCchHHHHHHHHHHHHHhhhc--ccceeE
Q 009058 467 TDPGVPIVYAGFGALMLTTCISF--LSHTQI 495 (545)
Q Consensus 467 ~DPGvp~Vy~Gf~LlllGL~isf--~~hrri 495 (545)
-||-..+|-.+.+++++++++.| ++.-|+
T Consensus 8 fDPrr~Lva~~~fl~vlAl~IHfilLSt~~f 38 (52)
T 1xrd_A 8 FDPRQALVGLATFLFVLALLIHFILLSTERF 38 (52)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EchhHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 37888899999999999999986 354343
Done!