Query 009058
Match_columns 545
No_of_seqs 190 out of 882
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 17:52:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009058.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009058hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1y5ic1 f.21.3.1 (C:1-225) Res 19.4 21 0.0015 31.7 2.0 26 248-273 46-71 (225)
2 d2c6aa1 g.41.11.1 (A:290-335) 13.2 20 0.0014 24.2 0.0 18 23-40 20-37 (46)
3 d1iaka2 d.19.1.1 (A:1-81) Clas 12.9 63 0.0046 24.3 2.9 28 358-386 10-38 (82)
4 d1uvqa2 d.19.1.1 (A:2-84) Clas 10.9 88 0.0064 23.5 3.2 28 358-386 11-39 (83)
5 d2cr8a1 g.41.11.1 (A:8-48) MDM 10.9 26 0.0019 23.0 0.1 18 23-40 11-28 (41)
6 d1pj5a3 d.16.1.5 (A:220-338) N 9.9 93 0.0068 24.4 3.3 50 493-542 37-114 (119)
7 d2ewca1 d.79.1.1 (A:3-122) Hyp 9.8 1.5E+02 0.011 23.0 4.6 37 498-534 17-53 (120)
8 d2o3ga1 d.145.1.4 (A:180-255) 8.1 2.1E+02 0.015 20.2 4.5 32 438-469 43-76 (76)
9 d1gl4a1 d.22.1.2 (A:399-631) D 8.0 6E+02 0.044 22.0 8.5 121 233-356 33-187 (233)
10 d1d7pm_ b.18.1.2 (M:) C2 domai 7.5 2.5E+02 0.019 22.3 5.3 66 310-375 84-153 (159)
No 1
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=19.36 E-value=21 Score=31.71 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=22.3
Q ss_pred cccchhhHHHHHHHHHHHHhhhcccc
Q 009058 248 LVGRFAPIGVHLAMLLIMAGGTLSAT 273 (545)
Q Consensus 248 ~~~r~G~~l~HlslllIL~G~llg~l 273 (545)
++.+++..++|.+++++++|.+++-+
T Consensus 46 k~l~~~~~lfH~gi~~~f~gh~~g~l 71 (225)
T d1y5ic1 46 KGMNLASNLFHIGILGIFVGHFFGML 71 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 36679999999999999999888754
No 2
>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.22 E-value=20 Score=24.23 Aligned_cols=18 Identities=39% Similarity=0.702 Sum_probs=15.4
Q ss_pred cccCcchhhhccccccce
Q 009058 23 STFNPQLHTLFNRCITLS 40 (545)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~ 40 (545)
..|||-++..|+||-.|+
T Consensus 20 ~~~N~Pl~ryC~rCWaLR 37 (46)
T d2c6aa1 20 NEMNPPLPSHCNRCWALR 37 (46)
T ss_dssp CCEECSSCSSCTTTCCCC
T ss_pred cccCCcchhHhHHHHHHh
Confidence 489999999999998554
No 3
>d1iaka2 d.19.1.1 (A:1-81) Class II MHC alpha chain, N-terminal domain {Mouse (Mus musculus), I-AK [TaxId: 10090]}
Probab=12.91 E-value=63 Score=24.32 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=20.9
Q ss_pred CeEEEecCCCCce-eEEEECCCcceEeecc
Q 009058 358 GITIYQTDWSFSA-LQVLKNDEGPFNLAMA 386 (545)
Q Consensus 358 G~~~YQssyg~~~-~~v~~~~~~~~~l~~~ 386 (545)
|..||| +||.+. .....||.+.+-.++.
T Consensus 10 g~~~yq-s~~psGe~~~efDGdE~fyvDl~ 38 (82)
T d1iaka2 10 GITVYQ-SPGDIGQYTFEFDGDELFYVDLD 38 (82)
T ss_dssp EEEEEE-ETTTEEEEEEEETTEEEEEEETT
T ss_pred ceeEEE-ecCCCccEeeeeCCcEEEEEEcC
Confidence 789999 677654 5777788877777763
No 4
>d1uvqa2 d.19.1.1 (A:2-84) Class II MHC alpha chain, N-terminal domain {Human (Homo sapiens), HLA-DQ6 [TaxId: 9606]}
Probab=10.91 E-value=88 Score=23.50 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=20.8
Q ss_pred CeEEEecCCCCce-eEEEECCCcceEeecc
Q 009058 358 GITIYQTDWSFSA-LQVLKNDEGPFNLAMA 386 (545)
Q Consensus 358 G~~~YQssyg~~~-~~v~~~~~~~~~l~~~ 386 (545)
|.+||| +||.+. .....||.+.+-.++.
T Consensus 11 g~~~yq-s~~psGey~~~fDGdE~fyvDl~ 39 (83)
T d1uvqa2 11 GVNLYQ-FYGPSGQYTHEFDGDEQFYVDLE 39 (83)
T ss_dssp EEEEEE-TTTTEEEEEEEETTEEEEEEETT
T ss_pred cceEEE-ecCCCccEeeccCCcEEEEEEcc
Confidence 789999 567664 5777788877777763
No 5
>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.89 E-value=26 Score=22.98 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.3
Q ss_pred cccCcchhhhccccccce
Q 009058 23 STFNPQLHTLFNRCITLS 40 (545)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~ 40 (545)
..|||-++..|.||-.|+
T Consensus 11 ~~~N~Pl~ryC~rCWalR 28 (41)
T d2cr8a1 11 KKFNSPSKRYCFRCWALR 28 (41)
T ss_dssp CCEECSSCCBCTTTCCBC
T ss_pred cccCCcchhHHHHHHHHH
Confidence 478999999999998554
No 6
>d1pj5a3 d.16.1.5 (A:220-338) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}
Probab=9.93 E-value=93 Score=24.41 Aligned_cols=50 Identities=18% Similarity=0.326 Sum_probs=32.9
Q ss_pred eeEEEEEcCCEEEEEEecCCCC----------------------------CccHHHHHHHHHhcccccccccccCcCC
Q 009058 493 TQIWALQDGTSVIIGGKTNRAK----------------------------AEFPDDMNRLLDRVPELVESSLSKQSDG 542 (545)
Q Consensus 493 rriWv~~~g~~v~igG~t~r~~----------------------------~~f~~E~~~l~~~l~~~~~~~~~~~~~~ 542 (545)
..+++|++++.+.+|+...+.+ ..|+..+++..+.+|.+.++.-++.-||
T Consensus 37 ~~~Y~R~e~~gll~G~yE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~e~a~~r~P~l~~~gi~~~~NG 114 (119)
T d1pj5a3 37 QDLYYREHGDRYGIGSYAHRPMPVDVDTLGAYAPETVSEHHMPSRLDFTLEDFLPAWEATKQLLPALADSEIEDGFNG 114 (119)
T ss_dssp GTEEEEEETTEEEEEECCSCCCBCCGGGSCCCCGGGCBTTBSTTEECCCHHHHHHHHHHHHHHCGGGGGSCEEEEEEE
T ss_pred CCEEEEEeCCeEEEeecCCCCcccccccccccCccCCCcccchhhCCCcHHHHHHHHHHHHHhcCCcccccccceeec
Confidence 5789999999999999865321 1123344555556677777666655554
No 7
>d2ewca1 d.79.1.1 (A:3-122) Hypothetical protein SPy2060 {Streptococcus pyogenes [TaxId: 1314]}
Probab=9.75 E-value=1.5e+02 Score=23.02 Aligned_cols=37 Identities=8% Similarity=0.145 Sum_probs=30.3
Q ss_pred EEcCCEEEEEEecCCCCCccHHHHHHHHHhccccccc
Q 009058 498 LQDGTSVIIGGKTNRAKAEFPDDMNRLLDRVPELVES 534 (545)
Q Consensus 498 ~~~g~~v~igG~t~r~~~~f~~E~~~l~~~l~~~~~~ 534 (545)
...|+.+.++|.+..-...++++.+..++.+..++.+
T Consensus 17 V~~G~~i~vsg~~G~v~~~~~~Q~~~a~~ni~~iL~~ 53 (120)
T d2ewca1 17 VEAGDFYYLNYCVGNVGQDIESQINGAFDEMERRLAL 53 (120)
T ss_dssp EEETTEEEEEEECCSTTSCHHHHHHHHHHHHHHHHHT
T ss_pred EEECCEEEECCcccccCCCHHHHHHHHHHHHHHHHHh
Confidence 3457899999998877788999999999988766554
No 8
>d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria meningitidis [TaxId: 487]}
Probab=8.06 E-value=2.1e+02 Score=20.17 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=23.4
Q ss_pred cCCCCCceeecCeEEEEeeee--eeeEEEEeecC
Q 009058 438 RPNSKLPIDIDGTKIVIVDAI--GSTGLDLKTDP 469 (545)
Q Consensus 438 ~l~~G~~~~l~g~~v~f~~~~--~~TGLqVk~DP 469 (545)
.+..|+.+.++|+++++.+.. +-.-+.|++-|
T Consensus 43 iP~~Ge~v~~~~~~f~V~~~~~~rI~~V~v~~lP 76 (76)
T d2o3ga1 43 IPDVGDFADFHGWRFEVVEKEGQRIERVKITKLP 76 (76)
T ss_dssp CCCTTCEEEETTEEEEEEEEETTEEEEEEEEECC
T ss_pred CCCCCCEEEECCEEEEEEEeeCCeEEEEEEEECc
Confidence 345688899999988887554 45667777765
No 9
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.99 E-value=6e+02 Score=22.02 Aligned_cols=121 Identities=13% Similarity=0.147 Sum_probs=66.8
Q ss_pred eEEEeecceEEEecccccchhhHHHHHHHHHHHHhhhccc--------------cceeEEEEEE-eCCceeeecccc---
Q 009058 233 YEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSA--------------TGSFRGSVTV-PQGLNFVVGDVL--- 294 (545)
Q Consensus 233 yrv~~~~~~l~A~Kg~~~r~G~~l~HlslllIL~G~llg~--------------l~Gf~g~v~l-~eGe~~~~~~~~--- 294 (545)
|-|..++....|-...=..+|+-+.=+.-|+-.+|.++.. .|-.+.++.- +.|+.+.+...+
T Consensus 33 yVv~~dGR~ytaIs~IP~~~G~~L~~L~~ig~~igWlFA~e~~~a~NGfslTGG~F~~~s~v~F~~~~~~l~i~q~~~Gl 112 (233)
T d1gl4a1 33 YVVMNHGRSYTAISTIPETVGYSLLPLAPIGGIIGWMFAVEQDGFKNGFSITGGEFTRQAEVTFLGHPGKLVLKQQFSGI 112 (233)
T ss_dssp EEETTTCEEEEEEESCCHHHHGGGTTCTHHHHHHHHHTCEECTTCCCHHHHHTTEEEEEEEEEETTSSSCEEEEEEEECB
T ss_pred EEEecCceEEEEccCCChhHhhhhhhhhhhcCceeeeEEeecCCccCceEeeeeEEEEEEEEEEcCCCcEEEEEEEEEcc
Confidence 4444455667777777777788777777777777766532 2333344433 456666554221
Q ss_pred C-----------CCCCCCCCCCCcceEEEEceEEEEE-ecCCCceeEEE-EEEEEecCCc---eeEEEEEEeCcceEE
Q 009058 295 G-----------PNGFLSTPTDAFSTEVHVNKFYMDY-YDSGEVKQFHS-DLSLFDIGGK---EVMRKTISVNDPLRY 356 (545)
Q Consensus 295 ~-----------~g~~~~~~~~~~pf~i~l~~F~i~y-y~~G~p~~f~S-dlsi~~~~G~---ev~~~~I~VN~PL~y 356 (545)
+ +|. .-.+|. +.+|++++|+-+| |..|......+ ..++.+++.. .....+..+|+=..|
T Consensus 113 D~~~~L~v~~~i~G~-VP~i~~--~a~v~i~dY~E~Y~~~~g~l~s~str~~~v~~~~~~~~~~~~t~~y~~~QtI~y 187 (233)
T d1gl4a1 113 DEHGHLTISTELEGR-VPQIPY--GASVHIEPYTELYHYSSSVITSSSTREYTVMEPDQDGAAPSHTHIYQWRQTITF 187 (233)
T ss_dssp CTTSCEECEEEEEEE-ECCCCT--TCEEECCCEEEEEEEETTEEEEEEEEEEEEECCSSTTCCCCEEEEEEEEEEEEC
T ss_pred CcCCeEEEEEEEEeE-cCCCCC--CCEEEeCCceEEEEeCCCeEEEEEEEEEEEEeccccCCcccceEEEEEeEEEEe
Confidence 1 122 123444 3499999999998 34567776666 3444442211 123344555555444
No 10
>d1d7pm_ b.18.1.2 (M:) C2 domain of factor VIII {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.52 E-value=2.5e+02 Score=22.27 Aligned_cols=66 Identities=17% Similarity=0.262 Sum_probs=36.8
Q ss_pred EEEEceEEEEEecCCCc-eeEEEE--EEEEecCCceeEEEEEEeCcceEECCeEEEecCCC-CceeEEEE
Q 009058 310 EVHVNKFYMDYYDSGEV-KQFHSD--LSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWS-FSALQVLK 375 (545)
Q Consensus 310 ~i~l~~F~i~yy~~G~p-~~f~Sd--lsi~~~~G~ev~~~~I~VN~PL~y~G~~~YQssyg-~~~~~v~~ 375 (545)
.-.+.+|.++|-.||.. +.|.-+ ..+...+-......+...+.|+.-+-++||-.+|. ...+++++
T Consensus 84 ~~~v~~y~l~yS~dg~~w~~y~~~~~~~vF~gn~d~~~~v~~~~~~pi~aryiRi~P~~w~~~~~lRvEl 153 (159)
T d1d7pm_ 84 SMYVKEFLISSSQDGHQWTLFFQNGKVKVFQGNQDSFTPVVNCLDPPLLTRYLRIHPQSWVHQIALRMEV 153 (159)
T ss_dssp EEEEEEEEEEEESSSSSCEECEETTEECCEECCSSSSCCEEEEEEEEEEEEEEEEEEEEEESSCCBEEEE
T ss_pred ceeEEEEEEEEecCCCeEEEEecCCceEEEeeecCCCceEEEECCCCeEEEEEEEEEeecCCccEEEEEE
Confidence 34578899998777753 222210 11222111111234555778999999999977663 33456654
Done!