BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009059
(545 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 140/290 (48%), Gaps = 10/290 (3%)
Query: 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 315
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSP 108
Query: 316 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 375
+A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 109 DGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKL 165
Query: 376 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV 435
W+ N + S + F P I +A+ + + + + Q+ + L GH + V
Sbjct: 166 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSV 224
Query: 436 HSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 494
V ++ G+ +AS SD+ V++W+ G+ + L+ + + F P ++
Sbjct: 225 RGVAFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVNGVAFRPDGQTIASA 280
Query: 495 GCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
+T++LWN TL+ H V +A S +ASAS DK VK+W
Sbjct: 281 SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 139/290 (47%), Gaps = 10/290 (3%)
Query: 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 315
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ-TLTGHSSSVWGVAFSP 354
Query: 316 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 375
+A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 355 DGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKL 411
Query: 376 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV 435
W+ N + S + F P I +A+ + + + + Q+ + L GH + V
Sbjct: 412 WNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSV 470
Query: 436 HSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 494
V ++ G+ +AS SD+ V++W+ G+ + L+ + F P ++
Sbjct: 471 RGVAFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 526
Query: 495 GCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
+T++LWN TL+ H V +A S +ASAS DK VK+W
Sbjct: 527 SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 140/291 (48%), Gaps = 10/291 (3%)
Query: 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314
E + A +S V FSPDG+ +A+ DK LW ++ TL H+ + V FS
Sbjct: 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFS 66
Query: 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374
P +A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 67 PDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VK 123
Query: 375 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 434
W+ N + S + F P I +A+ + + + + Q+ + L GH +
Sbjct: 124 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSS 182
Query: 435 VHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493
V V ++ G+ +AS SD+ V++W+ G+ + L+ + F P ++
Sbjct: 183 VWGVAFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 238
Query: 494 IGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
+T++LWN TL+ H V+ +A +ASAS DK VK+W
Sbjct: 239 ASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 139/290 (47%), Gaps = 10/290 (3%)
Query: 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 315
Q + +S V F PDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSP 313
Query: 316 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 375
+A++S D+TV++W+ N + L+T TGHS++V + F P + + + D+ + ++
Sbjct: 314 DGQTIASASDDKTVKLWN-RNGQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKL 370
Query: 376 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV 435
W+ N + S + F P I +A+ + + + + Q+ + L GH + V
Sbjct: 371 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSV 429
Query: 436 HSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 494
V ++ + +AS SD+ V++W+ G+ + L+ + F P ++
Sbjct: 430 WGVAFSPDDQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 485
Query: 495 GCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
+T++LWN TL+ H V +A S +ASAS DK VK+W
Sbjct: 486 SDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 315
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 501 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSP 559
Query: 316 SLSRLATSSADRTVRVWD 333
+A++S+D+TV++W+
Sbjct: 560 DGQTIASASSDKTVKLWN 577
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 149/316 (47%), Gaps = 17/316 (5%)
Query: 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 299
++GR +E K +F L T V S FSP+G+ LA DK +W +
Sbjct: 4 QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEK 62
Query: 300 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 359
T+ H I+DV +S + L ++S D+T+++WD + L+T GHS V +F+P
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 360 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILD 418
+ +L+ S + +R W + G C S + + F I++++ + I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 419 VETQVCRLKLQGHKN-QVHSVCWNTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTG 476
+ C L N V V ++ +G+Y LA+ D +++W SKG+C+ +
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHK 237
Query: 477 NKFHSCV---FHPTFPSLLVIGCYETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGM 531
N+ + C+ F T +V G + L +WN+ T+ L H +V S A +
Sbjct: 238 NEKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 532 VASAS--HDKCVKIWK 545
+ASA+ +DK +K+WK
Sbjct: 297 IASAALENDKTIKLWK 312
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 127/258 (49%), Gaps = 12/258 (4%)
Query: 294 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 353
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 76
Query: 354 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIEN 412
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 77 VAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 471
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKT 192
Query: 472 LSCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTV 528
L N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 252
Query: 529 NG--MVASASHDKCVKIW 544
G + S S D V IW
Sbjct: 253 TGGKWIVSGSEDNLVYIW 270
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 89 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 383 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 440
C S + + F I++++ + I D + C L N V V +
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 441 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 496
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 207 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 262
Query: 497 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 44/207 (21%)
Query: 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 314
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 249
Query: 375 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 434
+S+ G I++ + +N + I +++T+ KLQGH +
Sbjct: 250 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287
Query: 435 VHSVCWNTSGEYLASVS---DELVRVW 458
V S + + +AS + D+ +++W
Sbjct: 288 VISTACHPTENIIASAALENDKTIKLW 314
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 126/257 (49%), Gaps = 12/257 (4%)
Query: 295 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 354
+ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 37 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 95
Query: 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIENY 413
+ S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 96 AWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 154
Query: 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 472
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+ L
Sbjct: 155 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTL 211
Query: 473 SCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVN 529
N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 212 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 271
Query: 530 G--MVASASHDKCVKIW 544
G + S S D V IW
Sbjct: 272 GGKWIVSGSEDNLVYIW 288
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 47 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 106
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 107 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 164
Query: 383 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 440
C S + + F I++++ + I D + C L N V V +
Sbjct: 165 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 224
Query: 441 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 496
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 225 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 280
Query: 497 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 281 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 333
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 44/207 (21%)
Query: 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 314
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 166 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 225
Query: 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 226 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 267
Query: 375 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 434
+S+ G I++ + +N + I +++T+ KLQGH +
Sbjct: 268 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 305
Query: 435 VHSVCWNTSGEYLASVS---DELVRVW 458
V S + + +AS + D+ +++W
Sbjct: 306 VISTACHPTENIIASAALENDKTIKLW 332
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 127/258 (49%), Gaps = 12/258 (4%)
Query: 294 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 353
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 87
Query: 354 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIEN 412
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 88 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 146
Query: 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 471
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+
Sbjct: 147 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKT 203
Query: 472 LSCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTV 528
L N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 204 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 263
Query: 529 NG--MVASASHDKCVKIW 544
G + S S D V IW
Sbjct: 264 TGGKWIVSGSEDNLVYIW 281
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 40 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 99
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 100 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 157
Query: 383 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 440
C S + + F I++++ + I D + C L N V V +
Sbjct: 158 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 217
Query: 441 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 496
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 218 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 273
Query: 497 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 274 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 326
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 44/207 (21%)
Query: 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 314
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 159 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 218
Query: 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 219 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 260
Query: 375 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 434
+S+ G I++ + +N + I +++T+ KLQGH +
Sbjct: 261 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 298
Query: 435 VHSVCWNTSGEYLASVS---DELVRVW 458
V S + + +AS + D+ +++W
Sbjct: 299 VISTACHPTENIIASAALENDKTIKLW 325
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 127/258 (49%), Gaps = 12/258 (4%)
Query: 294 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 353
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 76
Query: 354 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIEN 412
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 77 VAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 471
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKT 192
Query: 472 LSCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTV 528
L N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 252
Query: 529 NG--MVASASHDKCVKIW 544
G + S S D V IW
Sbjct: 253 TGGKWIVSGSEDNLVYIW 270
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 89 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 383 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 440
C S + + F I++++ + I D + C L N V V +
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 441 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 496
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 207 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 262
Query: 497 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 44/207 (21%)
Query: 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 314
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 249
Query: 375 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 434
+S+ G I++ + +N + I +++T+ KLQGH +
Sbjct: 250 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287
Query: 435 VHSVCWNTSGEYLASVS---DELVRVW 458
V S + + +AS + D+ +++W
Sbjct: 288 VISTACHPTENIIASAALENDKTIKLW 314
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 126/257 (49%), Gaps = 12/257 (4%)
Query: 295 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 354
+ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 77
Query: 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIENY 413
+ S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 78 AW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 472
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+ L
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTL 193
Query: 473 SCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVN 529
N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 194 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 253
Query: 530 G--MVASASHDKCVKIW 544
G + S S D V IW
Sbjct: 254 GGKWIVSGSEDNLVYIW 270
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 89 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 383 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 440
C S + + F I++++ + I D + C L N V V +
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 441 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 496
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 207 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 262
Query: 497 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 44/207 (21%)
Query: 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 314
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 249
Query: 375 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 434
+S+ G I++ + +N + I +++T+ KLQGH +
Sbjct: 250 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287
Query: 435 VHSVCWNTSGEYLASVS---DELVRVW 458
V S + + +AS + D+ +++W
Sbjct: 288 VISTACHPTENIIASAALENDKTIKLW 314
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 127/258 (49%), Gaps = 12/258 (4%)
Query: 294 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 353
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 75
Query: 354 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIEN 412
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 76 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 134
Query: 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 471
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+
Sbjct: 135 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKT 191
Query: 472 LSCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTV 528
L N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 192 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 251
Query: 529 NG--MVASASHDKCVKIW 544
G + S S D V IW
Sbjct: 252 TGGKWIVSGSEDNLVYIW 269
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 28 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 87
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 88 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 145
Query: 383 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 440
C S + + F I++++ + I D + C L N V V +
Sbjct: 146 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 205
Query: 441 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 496
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 206 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 261
Query: 497 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 262 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 314
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 44/207 (21%)
Query: 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 314
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 147 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 206
Query: 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 207 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 248
Query: 375 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 434
+S+ G I++ + +N + I +++T+ KLQGH +
Sbjct: 249 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 286
Query: 435 VHSVCWNTSGEYLASVS---DELVRVW 458
V S + + +AS + D+ +++W
Sbjct: 287 VISTACHPTENIIASAALENDKTIKLW 313
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 126/257 (49%), Gaps = 12/257 (4%)
Query: 295 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 354
+ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 93
Query: 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIENY 413
+ S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 94 AWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Query: 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 472
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+ L
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTL 209
Query: 473 SCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVN 529
N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 210 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 269
Query: 530 G--MVASASHDKCVKIW 544
G + S S D V IW
Sbjct: 270 GGKWIVSGSEDNLVYIW 286
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 383 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 440
C S + + F I++++ + I D + C L N V V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 441 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 496
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 278
Query: 497 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 279 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 44/207 (21%)
Query: 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 314
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223
Query: 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 265
Query: 375 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 434
+S+ G I++ + +N + I +++T+ KLQGH +
Sbjct: 266 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 303
Query: 435 VHSVCWNTSGEYLASVS---DELVRVW 458
V S + + +AS + D+ +++W
Sbjct: 304 VISTACHPTENIIASAALENDKTIKLW 330
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 127/258 (49%), Gaps = 12/258 (4%)
Query: 294 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 353
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 69
Query: 354 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIEN 412
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 70 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 128
Query: 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 471
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+
Sbjct: 129 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKT 185
Query: 472 LSCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTV 528
L N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 186 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 245
Query: 529 NG--MVASASHDKCVKIW 544
G + S S D V IW
Sbjct: 246 TGGKWIVSGSEDNLVYIW 263
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 22 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 81
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 82 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 139
Query: 383 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 440
C S + + F I++++ + I D + C L N V V +
Sbjct: 140 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 199
Query: 441 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 496
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 200 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 255
Query: 497 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 256 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 308
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 44/207 (21%)
Query: 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 314
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 141 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 200
Query: 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 201 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 242
Query: 375 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 434
+S+ G I++ + +N + I +++T+ KLQGH +
Sbjct: 243 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 280
Query: 435 VHSVCWNTSGEYLASVS---DELVRVW 458
V S + + +AS + D+ +++W
Sbjct: 281 VISTACHPTENIIASAALENDKTIKLW 307
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 127/258 (49%), Gaps = 12/258 (4%)
Query: 294 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 353
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 70
Query: 354 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIEN 412
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 71 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 471
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKT 186
Query: 472 LSCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTV 528
L N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246
Query: 529 NG--MVASASHDKCVKIW 544
G + S S D V IW
Sbjct: 247 TGGKWIVSGSEDNLVYIW 264
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 83 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 140
Query: 383 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 440
C S + + F I++++ + I D + C L N V V +
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
Query: 441 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 496
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 201 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 256
Query: 497 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 44/207 (21%)
Query: 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 314
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 243
Query: 375 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 434
+S+ G I++ + +N + I +++T+ KLQGH +
Sbjct: 244 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281
Query: 435 VHSVCWNTSGEYLASVS---DELVRVW 458
V S + + +AS + D+ +++W
Sbjct: 282 VISTACHPTENIIASAALENDKTIKLW 308
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 127/258 (49%), Gaps = 12/258 (4%)
Query: 294 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 353
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 71
Query: 354 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIEN 412
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 72 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 130
Query: 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 471
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+
Sbjct: 131 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKT 187
Query: 472 LSCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTV 528
L N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 188 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 247
Query: 529 NG--MVASASHDKCVKIW 544
G + S S D V IW
Sbjct: 248 TGGKWIVSGSEDNLVYIW 265
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 24 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 83
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 84 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 141
Query: 383 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 440
C S + + F I++++ + I D + C L N V V +
Sbjct: 142 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 201
Query: 441 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 496
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 202 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 257
Query: 497 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 258 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 310
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 44/207 (21%)
Query: 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 314
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 143 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 202
Query: 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 203 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 244
Query: 375 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 434
+S+ G I++ + +N + I +++T+ KLQGH +
Sbjct: 245 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 282
Query: 435 VHSVCWNTSGEYLASVS---DELVRVW 458
V S + + +AS + D+ +++W
Sbjct: 283 VISTACHPTENIIASAALENDKTIKLW 309
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 127/258 (49%), Gaps = 12/258 (4%)
Query: 294 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 353
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 66
Query: 354 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIEN 412
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 67 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 125
Query: 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 471
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+
Sbjct: 126 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKT 182
Query: 472 LSCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTV 528
L N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 183 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 242
Query: 529 NG--MVASASHDKCVKIW 544
G + S S D V IW
Sbjct: 243 TGGKWIVSGSEDNLVYIW 260
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 19 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 78
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 79 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 136
Query: 383 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 440
C S + + F I++++ + I D + C L N V V +
Sbjct: 137 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 196
Query: 441 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 496
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 197 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 252
Query: 497 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 253 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 305
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 44/207 (21%)
Query: 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 314
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 138 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 197
Query: 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 198 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 239
Query: 375 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 434
+S+ G I++ + +N + I +++T+ KLQGH +
Sbjct: 240 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 277
Query: 435 VHSVCWNTSGEYLASVS---DELVRVW 458
V S + + +AS + D+ +++W
Sbjct: 278 VISTACHPTENIIASAALENDKTIKLW 304
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 127/258 (49%), Gaps = 12/258 (4%)
Query: 294 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 353
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 70
Query: 354 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIEN 412
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 71 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 471
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKT 186
Query: 472 LSCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTV 528
L N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246
Query: 529 NG--MVASASHDKCVKIW 544
G + S S D V IW
Sbjct: 247 TGGKWIVSGSEDNLVYIW 264
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 83 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 140
Query: 383 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 440
C S + + F I++++ + I D + C L N V V +
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
Query: 441 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 496
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 201 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 256
Query: 497 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 44/207 (21%)
Query: 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 314
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 243
Query: 375 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 434
+S+ G I++ + +N + I +++T+ KLQGH +
Sbjct: 244 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281
Query: 435 VHSVCWNTSGEYLASVS---DELVRVW 458
V S + + +AS + D+ +++W
Sbjct: 282 VISTACHPTENIIASAALENDKTIKLW 308
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 141/333 (42%), Gaps = 37/333 (11%)
Query: 236 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 295
DP++ + R E + S V F P ++ + D +W E+
Sbjct: 90 DPKEWIPRPPEK---------YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG 140
Query: 296 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 355
+ TL+ HT + D+ F S LA+ SAD T+++WD + + +RT GH V S+
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE-CIRTMHGHDHNVSSVS 199
Query: 356 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA-AIENYI 414
P+ D + S + I+ W + G C F +M + G ++A+ + + +
Sbjct: 200 IMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258
Query: 415 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEY---------------------LASVSDE 453
+ V T+ C+ +L+ H++ V + W Y L+ D+
Sbjct: 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 454 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T 512
+++W + S G C+ L N +FH +L +TL +W+ + + T
Sbjct: 319 TIKMWDV---STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT 375
Query: 513 LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545
L+AH+ V+SL V + S D+ VK+W+
Sbjct: 376 LNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 126/257 (49%), Gaps = 12/257 (4%)
Query: 295 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 354
+ + TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 74
Query: 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIENY 413
+ S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 75 AW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 472
+ I DV+T +C L H + V +V +N G + S S D L R+W S G+C+ L
Sbjct: 134 VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTL 190
Query: 473 SCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVN 529
N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 250
Query: 530 G--MVASASHDKCVKIW 544
G + S S D V IW
Sbjct: 251 GGKWIVSGSEDNMVYIW 267
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 86 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 383 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 440
C S + + F I++++ + I D + C L N V V +
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 441 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 496
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 204 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 259
Query: 497 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545
+ + +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 44/207 (21%)
Query: 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 314
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 246
Query: 375 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 434
+S+ G I++ + +N + I +++T+ KLQGH +
Sbjct: 247 -FSVTGGK---------------------WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDV 284
Query: 435 VHSVCWNTSGEYLASVS---DELVRVW 458
V S + + +AS + D+ +++W
Sbjct: 285 VISTACHPTENIIASAALENDKTIKLW 311
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 150/316 (47%), Gaps = 17/316 (5%)
Query: 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 299
++GR +E K +F L T V S FSP+G+ LA+ DK +W +
Sbjct: 4 QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 300 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 359
T+ H I+DV +S + L ++S D+T+++WD + L+T GHS V +F+P
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 360 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILD 418
+ +L+ S + +R W + G C S + + F I++++ + I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 419 VETQVCRLKLQGHKN-QVHSVCWNTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTG 476
+ C L N V V ++ +G+Y LA+ D +++W SKG+C+ +
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHK 237
Query: 477 NKFHSCV---FHPTFPSLLVIGCYETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGM 531
N+ + C+ F T +V G + L +WN+ T+ L H +V S A +
Sbjct: 238 NEKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 532 VASAS--HDKCVKIWK 545
+ASA+ +DK +K++K
Sbjct: 297 IASAALENDKTIKLYK 312
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 150/316 (47%), Gaps = 17/316 (5%)
Query: 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 299
++GR +E K +F L T V S FSP+G+ LA+ DK +W +
Sbjct: 4 QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 300 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 359
T+ H I+DV +S + L ++S D+T+++WD + L+T GHS V +F+P
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 360 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILD 418
+ +L+ S + +R W + G C S + + F I++++ + I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 419 VETQVCRLKLQGHKN-QVHSVCWNTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTG 476
+ C L N V V ++ +G+Y LA+ D +++W SKG+C+ +
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHK 237
Query: 477 NKFHSCV---FHPTFPSLLVIGCYETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGM 531
N+ + C+ F T +V G + L +WN+ T+ L H +V S A +
Sbjct: 238 NEKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 532 VASAS--HDKCVKIWK 545
+ASA+ +DK +K++K
Sbjct: 297 IASAALENDKTIKLFK 312
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 125/257 (48%), Gaps = 12/257 (4%)
Query: 295 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 354
+ + TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 74
Query: 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIENY 413
+ S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 75 AW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 472
+ I DV+T +C L H + V +V +N G + S S D L R+W S G+C+ L
Sbjct: 134 VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTL 190
Query: 473 SCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVN 529
N S V F P +L L+LW+ ++ K L T + H ++ A +V
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 250
Query: 530 G--MVASASHDKCVKIW 544
G + S S D V IW
Sbjct: 251 GGKWIVSGSEDNMVYIW 267
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 86 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 383 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 440
C S + + F I++++ + I D + C L N V V +
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 441 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 496
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 204 SPNGKYILAATLDNDLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 259
Query: 497 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545
+ + +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 92/207 (44%), Gaps = 44/207 (21%)
Query: 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 314
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374
P+ + ++ D +++WD L+T+TGH K + C N
Sbjct: 205 PNGKYILAATLDNDLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 246
Query: 375 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 434
+S+ G I++ + +N + I +++T+ KLQGH +
Sbjct: 247 -FSVTGGK---------------------WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDV 284
Query: 435 VHSVCWNTSGEYLASVS---DELVRVW 458
V S + + +AS + D+ +++W
Sbjct: 285 VISTACHPTENIIASAALENDKTIKLW 311
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 132/276 (47%), Gaps = 23/276 (8%)
Query: 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVW 332
G + +G D +W + TL HT W + +R + +S S DRT++VW
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIIS----GSTDRTLKVW 184
Query: 333 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG 392
+ E + + T GH++TV + H E + S ++ +R W I G C V
Sbjct: 185 NAETGE-CIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVA 240
Query: 393 ATQ-MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 451
A + +++ R R+++ A + + + D ET+ C LQGH N+V+S+ G ++ S S
Sbjct: 241 AVRCVQYDGR--RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGS 296
Query: 452 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT 510
D +RVW + +G+ CIH L TG++ + L+ T+++W++ +
Sbjct: 297 LDTSIRVWDVETGN---CIHTL--TGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC 351
Query: 511 L-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIW 544
L TL +K S++ N V ++S D VK+W
Sbjct: 352 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 12/152 (7%)
Query: 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333
DG+ + +G +D +W E+ T TL+ HT + ++F + + S D ++RVWD
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG--IHVVSGSLDTSIRVWD 305
Query: 334 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKC 389
E + + T TGH + ++ K+++L S + +S ++ W I G C G K
Sbjct: 306 VETGN-CIHTLTGHQSLTSGMEL---KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH 361
Query: 390 QSGATQMRFQPRLGRILAAAIENYISILDVET 421
QS T ++F ++ ++ + + + D++T
Sbjct: 362 QSAVTCLQFNKNF--VITSSDDGTVKLWDLKT 391
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 143/314 (45%), Gaps = 44/314 (14%)
Query: 271 FSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADR 327
++P G LLA+ G D++ +W TE S+ KS L E H + + V +SP + LA++S D
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83
Query: 328 TVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SC 383
T +W D+ + T GH V S+ + PS +LL +C + + W ++ C
Sbjct: 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYEC 142
Query: 384 AGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCW 440
V + + + P + +A+ ++ + + E VC L+GH++ V S+ +
Sbjct: 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF 202
Query: 441 NTSGEYLASVSDE-LVRVW------------SIGSGSKGECIHELSCTGNKFHS-CVFHP 486
+ SG+ LAS SD+ VR+W GS +CI CT + FHS ++
Sbjct: 203 DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI----CTLSGFHSRTIYDI 258
Query: 487 TFPSL---LVIGCY-ETLELWNMTEN-----KTLTLSAHDKLVSSLAASTVN------GM 531
+ L L C + + ++ N T +L+AH S + V G+
Sbjct: 259 AWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGL 318
Query: 532 VASASHDKCVKIWK 545
+AS S D V WK
Sbjct: 319 LASCSDDGEVAFWK 332
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 264 SKVESCHFSPDGKLLATGGHDKKAVLWCT---ESFTVKSTLEEHTQWITDVRFSPSLSRL 320
++V+S ++P G LLAT DK +W + + S L HTQ + V + PS L
Sbjct: 106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165
Query: 321 ATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 376
A++S D TV+++ E D+ T GH +TV SL F PS + L SC ++ +R W
Sbjct: 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA-SCSDDRTVRIW 221
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--F 295
RD+ EV + + ++ + T V+ + P +LLA+ +D L+ E +
Sbjct: 125 RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW 184
Query: 296 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 337
+TLE H + + F PS RLA+ S DRTVR+W P
Sbjct: 185 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLP 226
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 24/137 (17%)
Query: 264 SKVESCHFSPDGKLLATGGHDKKAVLW------------CT---ESFTVKSTLEE-HTQW 307
S V S F P G+ LA+ D+ +W C+ S+ TL H++
Sbjct: 195 STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT 254
Query: 308 ITDVRFSPSLSRLATSSADRTVRVW------DTENPDYSL--RTFTGHSTTVMSLDFHPS 359
I D+ + LAT+ D +RV+ D + P +SL HS V + ++P
Sbjct: 255 IYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPK 314
Query: 360 KEDLLCSCDNNSEIRYW 376
+ LL SC ++ E+ +W
Sbjct: 315 EPGLLASCSDDGEVAFW 331
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 73/313 (23%)
Query: 260 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 319
P+S + S FSPDGK LATG D+ +W E+ + L+ H Q I + + PS +
Sbjct: 120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 179
Query: 320 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379
L + S DRTVR+WD LRT
Sbjct: 180 LVSGSGDRTVRIWD-------LRT------------------------------------ 196
Query: 380 NGSCAGVFKCQSGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQ-------GH 431
G C+ + G T + P G+ +AA +++ + + D ET +L GH
Sbjct: 197 -GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH 255
Query: 432 KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK---------GECIHELSCTGNK-FH 480
K+ V+SV + G+ + S S D V++W++ + + G C E++ G+K F
Sbjct: 256 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC--EVTYIGHKDFV 313
Query: 481 SCVFHPTFPSLLVIGCYET-LELWN-MTENKTLTLSAHDKLVSSLAASTVNGM------V 532
V ++ G + + W+ + N L L H V S+A + + +
Sbjct: 314 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 373
Query: 533 ASASHDKCVKIWK 545
A+ S D +IWK
Sbjct: 374 ATGSGDCKARIWK 386
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 98/239 (41%), Gaps = 41/239 (17%)
Query: 338 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-- 395
D L H++ V + F E L C+ +++ + +++GS S A +
Sbjct: 54 DVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQV--YRVSDGSLVARLSDDSAANKDP 111
Query: 396 -----------------MRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHS 437
+ F P G+ LA E+ I I D+E + + LQGH+ ++S
Sbjct: 112 ENLNTSSSPSSDLYIRSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 170
Query: 438 VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 496
+ + SG+ L S S D VR+W + + G+C LS + + P + G
Sbjct: 171 LDYFPSGDKLVSGSGDRTVRIWDLRT---GQCSLTLSIE-DGVTTVAVSPGDGKYIAAGS 226
Query: 497 YE-TLELWNM----------TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
+ + +W+ +EN++ T H V S+ + V S S D+ VK+W
Sbjct: 227 LDRAVRVWDSETGFLVERLDSENESGT--GHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 67/183 (36%), Gaps = 31/183 (16%)
Query: 378 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS 437
+++ S K Q+ + + P L R + DVE K H + V
Sbjct: 25 LDSQSVPDALKKQTNDYYILYNPALPREI-----------DVELH----KSLDHTSVVCC 69
Query: 438 VCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNK---------------FHSC 482
V ++ GEYLA+ ++ +V+ + GS + + S S
Sbjct: 70 VKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 129
Query: 483 VFHPTFPSLLVIGCYETLELWNMTENK-TLTLSAHDKLVSSLAASTVNGMVASASHDKCV 541
F P L + +W++ K + L H++ + SL + S S D+ V
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 189
Query: 542 KIW 544
+IW
Sbjct: 190 RIW 192
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 3/200 (1%)
Query: 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314
+ + I A + FSPD + LATG H K ++ ES + +L+ ++I + +S
Sbjct: 114 QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYS 173
Query: 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374
P LA+ + D + ++D L T GH+ + SL F P + LL + ++ I+
Sbjct: 174 PDGKYLASGAIDGIINIFDIATGKL-LHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIK 231
Query: 375 YWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 433
+ + + + AG S + F P ++++ + + + DV T+ C H++
Sbjct: 232 IYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD 291
Query: 434 QVHSVCWNTSGEYLASVSDE 453
QV V +N +G + SV D+
Sbjct: 292 QVWGVKYNGNGSKIVSVGDD 311
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 78/177 (44%), Gaps = 4/177 (2%)
Query: 286 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 345
K W E ++ +LE H + V S +L A+SS D +R+WD EN +++
Sbjct: 61 KVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK-QIKSID 119
Query: 346 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGR 404
+L F P + L + + ++ + + +G + + + P
Sbjct: 120 AGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY 178
Query: 405 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSI 460
+ + AI+ I+I D+ T L+GH + S+ ++ + L + SD+ ++++ +
Sbjct: 179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 8/229 (3%)
Query: 320 LATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 378
+ T S D V+VW + L+ + GH V+S+D + + S ++ IR W +
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLP-IAASSSLDAHIRLWDL 109
Query: 379 NNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS 437
NG + A + F P + ++I VE+ L + S
Sbjct: 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILS 169
Query: 438 VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 496
+ ++ G+YLAS + D ++ ++ I +G + +H L S F P L+
Sbjct: 170 IAYSPDGKYLASGAIDGIINIFDIATG---KLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 497 YETLELWNMTE-NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
++++++ N TLS H V ++A + S+S DK VK+W
Sbjct: 227 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVW 275
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 220 GSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA 279
GS D V + + AD + F +I ++V+ +S DG LA
Sbjct: 76 GSFDSTVSIWAKEESAD------------RTFEMDLLAIIEGHENEVKGVAWSNDGYYLA 123
Query: 280 TGGHDKKAVLWCT----ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335
T DK +W T E + S L+EH+Q + V + PS + LA+SS D TVR+W
Sbjct: 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY 183
Query: 336 NPDYS-LRTFTGHSTTVMSLDFHPSKEDL-LCSCDNNSEIRYW 376
+ D+ + GH TV S DF ++ LCS ++S +R W
Sbjct: 184 DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 99/244 (40%), Gaps = 47/244 (19%)
Query: 313 FSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDN 369
F S LAT S DR +++ + D++L T H + S+ + P LL +
Sbjct: 20 FDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSF 78
Query: 370 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 429
+S + W+ + + F+ L I+ +
Sbjct: 79 DSTVSIWA------------KEESADRTFEMDLLAII----------------------E 104
Query: 430 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHSCVFHPT 487
GH+N+V V W+ G YLA+ S D+ V +W SG + ECI L ++HP+
Sbjct: 105 GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS 164
Query: 488 FPSLLVIGCY-ETLELWNMTENK---TLTLSAHDKLVSSLAASTVNGM--VASASHDKCV 541
+LL Y +T+ +W ++ L+ H+ V S G+ + S S D V
Sbjct: 165 -EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV 223
Query: 542 KIWK 545
++WK
Sbjct: 224 RVWK 227
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 113/235 (48%), Gaps = 20/235 (8%)
Query: 260 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 319
P + +KV S S D LL+ G + + C+ + LE H+ +++DV S + +
Sbjct: 25 PETATKVVST--SRDKTLLSWGPNPDRHSSECSYGLPDRR-LEGHSAFVSDVALSNNGNF 81
Query: 320 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379
++S D ++R+W+ +N + F GH+ V+S+ F P ++ +N+ +R W++
Sbjct: 82 AVSASWDHSLRLWNLQNGQCQYK-FLGHTKDVLSVAFSPDNRQIVSGGRDNA-LRVWNV- 138
Query: 380 NGSCAGVFKCQSGA-----TQMRFQPRLGR--ILAAAIENYISILDVETQVCRLKLQGHK 432
G C + GA + +RF P L I++ +N + + D+ T L+GH
Sbjct: 139 KGEC--MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHT 196
Query: 433 NQVHSVCWNTSGEYLASV-SDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 486
N V SV + G AS D + R+W + +KGE + E++ G + F P
Sbjct: 197 NYVTSVTVSPDGSLCASSDKDGVARLWDL---TKGEALSEMA-AGAPINQICFSP 247
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 83/246 (33%), Gaps = 52/246 (21%)
Query: 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 325
V S +G + D LW ++ + HT+ + V FSP ++ +
Sbjct: 70 VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 326 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE------------------------ 361
D +RVW+ + + H+ V + F PS +
Sbjct: 130 DNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLV 189
Query: 362 -------------------DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL 402
L S D + R W + G + Q+ F P
Sbjct: 190 TDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNR 249
Query: 403 GRILAAAIENYISILDVETQVCRLKL----QGHKNQVH---SVCWNTSGEYLAS-VSDEL 454
+ AA E I I D+E + ++L QG K V S+ W+ G L S +D +
Sbjct: 250 -YWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNV 308
Query: 455 VRVWSI 460
+RVW +
Sbjct: 309 IRVWGV 314
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 20/218 (9%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE---SFTVKSTLEEHTQWITDVRFSPSLSR 319
T V S FS D + + +G DK LW T +TV+ E H++W++ VRFSP+ S
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 185
Query: 320 --LATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 376
+ + D+ V+VW+ N L+T GH+ + ++ P L S + + W
Sbjct: 186 PIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 242
Query: 377 SINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--------IENYISILDVETQVCRLKL 428
+N G + F P + AA +E I + +++ +V
Sbjct: 243 DLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSS 302
Query: 429 QGHKNQVHSVCWNTSGEYL-ASVSDELVRVWSIGSGSK 465
+ Q S+ W+ G+ L A +D LVRVW + G++
Sbjct: 303 KAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 124/303 (40%), Gaps = 49/303 (16%)
Query: 273 PDGKLLATGGHDKKAVLWC-----TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 327
PD ++ + DK ++W T + L H+ +++DV S + S D
Sbjct: 51 PD--MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108
Query: 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 387
T+R+WD + R F GH+ V+S+ F ++ S + I+ W+ G C
Sbjct: 109 TLRLWDLTT-GTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWN-TLGVCKYTV 165
Query: 388 KCQSGATQ---MRFQPRLGR--ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCW 440
+ +S + +RF P I++ + + + ++ C+LK GH +++V
Sbjct: 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTV 223
Query: 441 NTSGEYLAS-VSDELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLV 493
+ G AS D +W + G G+ I+ L + N++ C T PS
Sbjct: 224 SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA--ATGPS--- 278
Query: 494 IGCYETLELWNMTENKTLTLSAHDKLVS-----------SLAASTVNGMVASASHDKCVK 542
+++W++ E K + +++S SLA S + + D V+
Sbjct: 279 ------IKIWDL-EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 331
Query: 543 IWK 545
+W+
Sbjct: 332 VWQ 334
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY----LASVSDELVRVWSIGSGSKGEC 468
Y + E R L+GH V + T+ ++ L++ D+ + +W +
Sbjct: 19 YFQSMMTEQMTLRGTLKGHNGWVTQIA--TTPQFPDMILSASRDKTIIMWKLTRDETNYG 76
Query: 469 IHELSCTGNK-FHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTLT-LSAHDKLVSSLAA 525
I + + G+ F S V + + G ++ TL LW++T T H K V S+A
Sbjct: 77 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 136
Query: 526 STVNGMVASASHDKCVKIW 544
S+ N + S S DK +K+W
Sbjct: 137 SSDNRQIVSGSRDKTIKLW 155
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 89/214 (41%), Gaps = 16/214 (7%)
Query: 343 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI-----NNGSCAGVFKCQSGATQMR 397
T GH+ V + P D++ S + I W + N G + S
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 398 FQPRLGRI-LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELV 455
G+ L+ + + + + D+ T + GH V SV +++ + S S D+ +
Sbjct: 93 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 456 RVWSIGSGSKGECIHELS-CTGNKFHSCV-FHPTFPSLLVIGCY--ETLELWNMTENKTL 511
++W+ + G C + + + +++ SCV F P + +++ C + +++WN+ K
Sbjct: 153 KLWN----TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 208
Query: 512 TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIW 544
T H ++++ S + AS D +W
Sbjct: 209 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 20/218 (9%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE---SFTVKSTLEEHTQWITDVRFSPSLSR 319
T V S FS D + + +G DK LW T +TV+ E H++W++ VRFSP+ S
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 162
Query: 320 --LATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 376
+ + D+ V+VW+ N L+T GH+ + ++ P L S + + W
Sbjct: 163 PIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 219
Query: 377 SINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--------IENYISILDVETQVCRLKL 428
+N G + F P + AA +E I + +++ +V
Sbjct: 220 DLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSS 279
Query: 429 QGHKNQVHSVCWNTSGEYL-ASVSDELVRVWSIGSGSK 465
+ Q S+ W+ G+ L A +D LVRVW + G++
Sbjct: 280 KAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 317
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 124/303 (40%), Gaps = 49/303 (16%)
Query: 273 PDGKLLATGGHDKKAVLWC-----TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 327
PD ++ + DK ++W T + L H+ +++DV S + S D
Sbjct: 28 PD--MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 85
Query: 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 387
T+R+WD + R F GH+ V+S+ F ++ S + I+ W+ G C
Sbjct: 86 TLRLWDLTT-GTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWN-TLGVCKYTV 142
Query: 388 KCQSGATQ---MRFQPRLGR--ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCW 440
+ +S + +RF P I++ + + + ++ C+LK GH +++V
Sbjct: 143 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTV 200
Query: 441 NTSGEYLAS-VSDELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLV 493
+ G AS D +W + G G+ I+ L + N++ C T PS
Sbjct: 201 SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA--ATGPS--- 255
Query: 494 IGCYETLELWNMTENKTLTLSAHDKLVS-----------SLAASTVNGMVASASHDKCVK 542
+++W++ E K + +++S SLA S + + D V+
Sbjct: 256 ------IKIWDL-EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 308
Query: 543 IWK 545
+W+
Sbjct: 309 VWQ 311
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
Query: 420 ETQVCRLKLQGHKNQVHSVCWNTSGEY----LASVSDELVRVWSIGSGSKGECIHELSCT 475
E R L+GH V + T+ ++ L++ D+ + +W + I + +
Sbjct: 3 EQMTLRGTLKGHNGWVTQIA--TTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 60
Query: 476 GNK-FHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMV 532
G+ F S V + + G ++ TL LW++T T H K V S+A S+ N +
Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120
Query: 533 ASASHDKCVKIW 544
S S DK +K+W
Sbjct: 121 VSGSRDKTIKLW 132
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 89/214 (41%), Gaps = 16/214 (7%)
Query: 343 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI-----NNGSCAGVFKCQSGATQMR 397
T GH+ V + P D++ S + I W + N G + S
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 398 FQPRLGRI-LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELV 455
G+ L+ + + + + D+ T + GH V SV +++ + S S D+ +
Sbjct: 70 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 456 RVWSIGSGSKGECIHELS-CTGNKFHSCV-FHPTFPSLLVIGCY--ETLELWNMTENKTL 511
++W+ + G C + + + +++ SCV F P + +++ C + +++WN+ K
Sbjct: 130 KLWN----TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 185
Query: 512 TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIW 544
T H ++++ S + AS D +W
Sbjct: 186 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 113/253 (44%), Gaps = 42/253 (16%)
Query: 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW-----CTE 293
D+ R ++ G T+ F S+V S FSPD + + + G +++ LW C
Sbjct: 97 DKTLRLWDLRTGTTYKRF---VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF 153
Query: 294 SFTVKSTLEEHTQWITDVRFSPSLS----------RLATSSADRTVRVWDTENPDYSLR- 342
S K E H+ W++ VR+SP + A+ D ++VW+T ++ +R
Sbjct: 154 SSAEK---ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT---NFQIRY 207
Query: 343 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPR 401
TF H + V L P+ + + + + ++ W I N + F S Q+ F P+
Sbjct: 208 TFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPK 266
Query: 402 LGRILAAAIENYISILDVETQ----VCRL------KLQGHKN---QVHSVCWNTSGEYL- 447
L + +A + + I ++ TQ VC + K +G K Q S+ WN G+ L
Sbjct: 267 L-QWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLF 325
Query: 448 ASVSDELVRVWSI 460
A +D ++R +S
Sbjct: 326 AGFTDGVIRTFSF 338
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 89/209 (42%), Gaps = 26/209 (12%)
Query: 274 DGKLLATGGHDKKAVLWCTES------FTV-KSTLEEHTQWITDVRFSPSLSRLATSSAD 326
D +L +G DK ++W F + L H +++D+ S +SS D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 327 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--- 383
+T+R+WD + + F GH + V S+ F P +L S EI+ W+I G C
Sbjct: 98 KTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNI-LGECKFS 154
Query: 384 -------AGVFKCQSGATQM----RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK 432
+ C + M + QP + + + + + Q+ R + H+
Sbjct: 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQI-RYTFKAHE 213
Query: 433 NQVHSVCWNTSGEYLAS-VSDELVRVWSI 460
+ V+ + + +G+Y+A+ D+ + +W I
Sbjct: 214 SNVNHLSISPNGKYIATGGKDKKLLIWDI 242
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/275 (21%), Positives = 109/275 (39%), Gaps = 76/275 (27%)
Query: 298 KSTLEEHTQWITDVR--FSPSLSR----LATSSADRTVRVW----DTENPDYSL--RTFT 345
+ LE H+ W+T + FS + L + S D+TV +W + +N + + + T
Sbjct: 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT 73
Query: 346 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 405
GH+ V DL S +N C +
Sbjct: 74 GHNHFV---------SDLALSQEN-------------CFAI------------------- 92
Query: 406 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVSDELVRVWSIGSGS 464
+++ + + + D+ T + GH+++V+SV ++ + L++ ++ +++W+I
Sbjct: 93 -SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI---- 147
Query: 465 KGECIHELSCTGNKFHS----CVFH-----------PTFPSLLVIGCYETLELWNMTENK 509
GEC + S + HS CV + P P +G L++WN
Sbjct: 148 LGEC--KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQI 205
Query: 510 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
T AH+ V+ L+ S +A+ DK + IW
Sbjct: 206 RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 113/254 (44%), Gaps = 21/254 (8%)
Query: 230 LSPDDADPRDRVGRSAEVGK-----GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 284
L D + R+ S++ GK FT + + + V +C ++P G +A GG D
Sbjct: 68 LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLD 127
Query: 285 KKAVLWC-----TESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 338
K ++ E+ K ++ HT +++ F+ S ++ T+S D T +WD E+
Sbjct: 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 187
Query: 339 YSLRTFTGHSTTVMSLDFHPSKED---LLCSCDNNSEIRYWSINNGSCAGVFKC-QSGAT 394
L++F GH V+ LD PS+ + CD + + W + +G C F+ +S
Sbjct: 188 L-LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV--WDMRSGQCVQAFETHESDVN 244
Query: 395 QMRFQPRLGRILAAAIENYISILDV--ETQVCRLKLQGHKNQVHSVCWNTSGEYL-ASVS 451
+R+ P + + + + D+ + +V + SV ++ SG L A +
Sbjct: 245 SVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN 304
Query: 452 DELVRVWSIGSGSK 465
D + VW + GS+
Sbjct: 305 DYTINVWDVLKGSR 318
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Query: 272 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 331
S G +GG DKKA++W S E H + VR+ PS A+ S D T R+
Sbjct: 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266
Query: 332 WDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK 388
+D D + ++ S S+DF S LL + N+ I W + GS + F
Sbjct: 267 YDLR-ADREVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGSRVSILFG 324
Query: 389 CQSGATQMRFQP 400
++ + +R P
Sbjct: 325 HENRVSTLRVSP 336
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 268 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 327
S FS G+LL G +D +W + S L H ++ +R SP + + S D
Sbjct: 289 SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH 348
Query: 328 TVRVW 332
T+RVW
Sbjct: 349 TLRVW 353
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 92/192 (47%), Gaps = 15/192 (7%)
Query: 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333
D +++ TG D +W + + +TL H + + +RF+ + + T S DR++ VWD
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM--MVTCSKDRSIAVWD 239
Query: 334 TENP-DYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-- 389
+P D +L R GH V +DF + + S + I+ W N +C V
Sbjct: 240 MASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVW--NTSTCEFVRTLNG 294
Query: 390 -QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 448
+ G ++++ RL +++ + +N I + D+E C L+GH+ V + ++ ++
Sbjct: 295 HKRGIACLQYRDRL--VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK-RIVS 351
Query: 449 SVSDELVRVWSI 460
D ++VW +
Sbjct: 352 GAYDGKIKVWDL 363
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 20/149 (13%)
Query: 404 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 463
+I++ +N I I D T C+ L GH V + ++ S SD VRVW + +
Sbjct: 145 KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGS-SDSTVRVWDVNT- 202
Query: 464 SKGECIHELSCTGNKFHSC--VFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSAHDKL 519
GE ++ L H C V H F + +++ C + ++ +W+M +TL L
Sbjct: 203 --GEMLNTL------IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR--VL 252
Query: 520 VSSLAASTV----NGMVASASHDKCVKIW 544
V AA V + + SAS D+ +K+W
Sbjct: 253 VGHRAAVNVVDFDDKYIVSASGDRTIKVW 281
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 8/168 (4%)
Query: 299 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 355
+TL H+Q + +R++P LA+ D V VW + E L+TFT H V ++
Sbjct: 235 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 356 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IE 411
+ P + ++L + S+ IR W++ +G+C S + + P +++ +
Sbjct: 295 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 354
Query: 412 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVW 458
N + I T +L+GH ++V S+ + G +AS +DE +R+W
Sbjct: 355 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 117/279 (41%), Gaps = 27/279 (9%)
Query: 284 DKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 341
D LW S + L E+ ++I+ V + + LA ++ V++WD + L
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-QKRL 193
Query: 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ----MR 397
R T HS V SL ++ +L S + I + + SG +Q +R
Sbjct: 194 RNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHH--VATLSGHSQEVCGLR 248
Query: 398 FQPRLGRILAAAIENYISIL-DVETQVCRLKLQ---GHKNQVHSVCW-NTSGEYLAS--- 449
+ P + + +N +++ + + LQ H+ V +V W LA+
Sbjct: 249 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 308
Query: 450 VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--ETLELWNM-T 506
SD +R+W++ SG+ C+ + ++ S ++ P + L+ + L +W T
Sbjct: 309 TSDRHIRIWNVCSGA---CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 364
Query: 507 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545
K L H V SL S VASA+ D+ +++W+
Sbjct: 365 MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 264 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 321
S+V S +SP K L +G + V+W + + L+ HT + + SP + +A
Sbjct: 332 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 391
Query: 322 TSSADRTVRVW 332
+++AD T+R+W
Sbjct: 392 SAAADETLRLW 402
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 8/168 (4%)
Query: 299 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 355
+TL H+Q + +R++P LA+ D V VW + E L+TFT H V ++
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 356 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IE 411
+ P + ++L + S+ IR W++ +G+C S + + P +++ +
Sbjct: 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 263
Query: 412 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVW 458
N + I T +L+GH ++V S+ + G +AS +DE +R+W
Sbjct: 264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 116/279 (41%), Gaps = 27/279 (9%)
Query: 284 DKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 341
D LW S + L E+ ++I+ V + + LA ++ V++WD + L
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RL 102
Query: 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ----MR 397
R T HS V SL + +L S + I + + SG +Q +R
Sbjct: 103 RNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHH--VATLSGHSQEVCGLR 157
Query: 398 FQPRLGRILAAAIENYISIL-DVETQVCRLKLQ---GHKNQVHSVCW-NTSGEYLAS--- 449
+ P + + +N +++ + + LQ H+ V +V W LA+
Sbjct: 158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 217
Query: 450 VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--ETLELWNM-T 506
SD +R+W++ SG+ C+ + ++ S ++ P + L+ + L +W T
Sbjct: 218 TSDRHIRIWNVCSGA---CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 273
Query: 507 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545
K L H V SL S VASA+ D+ +++W+
Sbjct: 274 MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 264 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 321
S+V S +SP K L +G + V+W + + L+ HT + + SP + +A
Sbjct: 241 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 300
Query: 322 TSSADRTVRVW 332
+++AD T+R+W
Sbjct: 301 SAAADETLRLW 311
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 8/168 (4%)
Query: 299 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 355
+TL H+Q + +R++P LA+ D V VW + E L+TFT H V ++
Sbjct: 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 356 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IE 411
+ P + ++L + S+ IR W++ +G+C S + + P +++ +
Sbjct: 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 343
Query: 412 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVW 458
N + I T +L+GH ++V S+ + G +AS +DE +R+W
Sbjct: 344 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 117/279 (41%), Gaps = 27/279 (9%)
Query: 284 DKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 341
D LW S + L E+ ++I+ V + + LA ++ V++WD + L
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-QKRL 182
Query: 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ----MR 397
R T HS V SL ++ +L S + I + + SG +Q +R
Sbjct: 183 RNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHH--VATLSGHSQEVCGLR 237
Query: 398 FQPRLGRILAAAIENYISIL-DVETQVCRLKLQ---GHKNQVHSVCW-NTSGEYLAS--- 449
+ P + + +N +++ + + LQ H+ V +V W LA+
Sbjct: 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 297
Query: 450 VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--ETLELWNM-T 506
SD +R+W++ SG+ C+ + ++ S ++ P + L+ + L +W T
Sbjct: 298 TSDRHIRIWNVCSGA---CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 353
Query: 507 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545
K L H V SL S VASA+ D+ +++W+
Sbjct: 354 MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 264 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 321
S+V S +SP K L +G + V+W + + L+ HT + + SP + +A
Sbjct: 321 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 380
Query: 322 TSSADRTVRVW 332
+++AD T+R+W
Sbjct: 381 SAAADETLRLW 391
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 119/287 (41%), Gaps = 40/287 (13%)
Query: 243 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 302
++ +V K T + I A +V C FS D +AT DKK +W + + + T +
Sbjct: 637 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 696
Query: 303 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 360
EH++ + F+ + LAT S D +++WD N T GH+ +V F P
Sbjct: 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDD 755
Query: 361 EDLLCSCDNNSEIRYWSINNGS--------------------CAGVFKCQSGATQMRFQP 400
E LL SC + +R W + + + + KC S +
Sbjct: 756 E-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD----- 809
Query: 401 RLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLA--SVSDELVRV 457
G + A +N + + D+ T ++ GH + + C + ++LA ++S V +
Sbjct: 810 --GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ-YCDFSPYDHLAVIALSQYCVEL 866
Query: 458 WSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 503
W+I S K +C LS H +F P S L +T+ +W
Sbjct: 867 WNIDSRLKVADCRGHLSWV----HGVMFSPDGSSFLTASDDQTIRVW 909
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 126/305 (41%), Gaps = 26/305 (8%)
Query: 260 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 319
P + + +C FS DG+ +A+ G DK ++ E+ ++ H + FS S
Sbjct: 613 PHTDAVYHAC-FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 671
Query: 320 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEIRYWSI 378
+AT SAD+ V++WD+ + T+ HS V F + S LL + N+ ++ W +
Sbjct: 672 IATCSADKKVKIWDSATGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 730
Query: 379 NNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVET-------QVCRLKLQG 430
N C +F + RF P + + + + + + DV + V R L
Sbjct: 731 NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSS 790
Query: 431 H------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNK--FHSC 482
+ V W+ G+ + + V ++ I + IH TG+ C
Sbjct: 791 EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH----TGHHSTIQYC 846
Query: 483 VFHPTFPSLLVIGCYE-TLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 540
F P + L VI + +ELWN+ + K H V + S +AS D+
Sbjct: 847 DFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 905
Query: 541 VKIWK 545
+++W+
Sbjct: 906 IRVWE 910
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 107/260 (41%), Gaps = 25/260 (9%)
Query: 227 ESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHD 284
+S+++ AD + ++ SA T+ E + +V CHF+ LLATG +D
Sbjct: 669 DSYIATCSADKKVKIWDSATGKLVHTYDE------HSEQVNCCHFTNKSNHLLLATGSND 722
Query: 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 344
LW ++T+ HT + RFSP LA+ SAD T+R+WD + + R
Sbjct: 723 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE--RKS 780
Query: 345 TGHSTTVMSLDFHPSKEDLLCSC-------------DNNSEIRYWSINNGSCAGVFKCQS 391
+S + P +++ C N + + +G A +
Sbjct: 781 INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH 840
Query: 392 GATQM-RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLAS 449
Q F P + A + + + ++++++ +GH + VH V ++ G +L +
Sbjct: 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 900
Query: 450 VSDELVRVWSIGSGSKGECI 469
D+ +RVW K I
Sbjct: 901 SDDQTIRVWETKKVCKNSAI 920
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 115/293 (39%), Gaps = 33/293 (11%)
Query: 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 323
S ++ C FSP L LW +S + H W+ V FSP S T+
Sbjct: 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 900
Query: 324 SADRTVRVWDT----ENPDYSLR-----TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374
S D+T+RVW+T +N L+ F + T V+++D + L +I
Sbjct: 901 SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVD---NIRGLQLIAGKTGQID 957
Query: 375 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 434
Y SC C S P L + + I I+++ GHK
Sbjct: 958 YLPEAQVSCC----CLS--------PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA 1005
Query: 435 VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493
V + + G+ L S S D +++VW+ +G + ++ F S L+
Sbjct: 1006 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDY------VFLQAHQETVKDFRLLQDSRLL 1059
Query: 494 IGCYE-TLELWNMTENKT-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
++ T+++WN+ + + H V S A S+ +S S DK KIW
Sbjct: 1060 SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 104/271 (38%), Gaps = 32/271 (11%)
Query: 256 FQLIPAST--------SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW 307
QLI T ++V C SP + +A G D + + V S+ H +
Sbjct: 946 LQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA 1005
Query: 308 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 367
+ ++F+ L +SS D ++VW+ + DY H TV DF ++ L S
Sbjct: 1006 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF--LQAHQETVK--DFRLLQDSRLLSW 1061
Query: 368 DNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIENYISILDVETQVCRL 426
+ ++ W++ G F C G + + + + I +
Sbjct: 1062 SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH 1121
Query: 427 KLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCT---------- 475
+L+GH V ++ G LA+ D +R+W++ S G+ +H SC
Sbjct: 1122 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV---SDGQLLH--SCAPISVEEGTAT 1176
Query: 476 -GNKFHSCVFHPTFPSLLVIGCYETLELWNM 505
G F P +L+ G Y L+ WN+
Sbjct: 1177 HGGWVTDVCFSPDSKTLVSAGGY--LKWWNV 1205
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 119/287 (41%), Gaps = 40/287 (13%)
Query: 243 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 302
++ +V K T + I A +V C FS D +AT DKK +W + + + T +
Sbjct: 644 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 703
Query: 303 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 360
EH++ + F+ + LAT S D +++WD N T GH+ +V F P
Sbjct: 704 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDD 762
Query: 361 EDLLCSCDNNSEIRYWSINNGS--------------------CAGVFKCQSGATQMRFQP 400
E LL SC + +R W + + + + KC S +
Sbjct: 763 E-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD----- 816
Query: 401 RLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLA--SVSDELVRV 457
G + A +N + + D+ T ++ GH + + C + ++LA ++S V +
Sbjct: 817 --GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ-YCDFSPYDHLAVIALSQYCVEL 873
Query: 458 WSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 503
W+I S K +C LS H +F P S L +T+ +W
Sbjct: 874 WNIDSRLKVADCRGHLSWV----HGVMFSPDGSSFLTASDDQTIRVW 916
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 126/305 (41%), Gaps = 26/305 (8%)
Query: 260 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 319
P + + +C FS DG+ +A+ G DK ++ E+ ++ H + FS S
Sbjct: 620 PHTDAVYHAC-FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 678
Query: 320 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEIRYWSI 378
+AT SAD+ V++WD+ + T+ HS V F + S LL + N+ ++ W +
Sbjct: 679 IATCSADKKVKIWDSATGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 737
Query: 379 NNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVET-------QVCRLKLQG 430
N C +F + RF P + + + + + + DV + V R L
Sbjct: 738 NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSS 797
Query: 431 H------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNK--FHSC 482
+ V W+ G+ + + V ++ I + IH TG+ C
Sbjct: 798 EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH----TGHHSTIQYC 853
Query: 483 VFHPTFPSLLVIGCYE-TLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 540
F P + L VI + +ELWN+ + K H V + S +AS D+
Sbjct: 854 DFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 912
Query: 541 VKIWK 545
+++W+
Sbjct: 913 IRVWE 917
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 107/260 (41%), Gaps = 25/260 (9%)
Query: 227 ESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHD 284
+S+++ AD + ++ SA T+ E + +V CHF+ LLATG +D
Sbjct: 676 DSYIATCSADKKVKIWDSATGKLVHTYDE------HSEQVNCCHFTNKSNHLLLATGSND 729
Query: 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 344
LW ++T+ HT + RFSP LA+ SAD T+R+WD + + R
Sbjct: 730 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE--RKS 787
Query: 345 TGHSTTVMSLDFHPSKEDLLCSC-------------DNNSEIRYWSINNGSCAGVFKCQS 391
+S + P +++ C N + + +G A +
Sbjct: 788 INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH 847
Query: 392 GATQM-RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLAS 449
Q F P + A + + + ++++++ +GH + VH V ++ G +L +
Sbjct: 848 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 907
Query: 450 VSDELVRVWSIGSGSKGECI 469
D+ +RVW K I
Sbjct: 908 SDDQTIRVWETKKVCKNSAI 927
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 115/293 (39%), Gaps = 33/293 (11%)
Query: 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 323
S ++ C FSP L LW +S + H W+ V FSP S T+
Sbjct: 848 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 907
Query: 324 SADRTVRVWDT----ENPDYSLR-----TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374
S D+T+RVW+T +N L+ F + T V+++D + L +I
Sbjct: 908 SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVD---NIRGLQLIAGKTGQID 964
Query: 375 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 434
Y SC C S P L + + I I+++ GHK
Sbjct: 965 YLPEAQVSCC----CLS--------PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA 1012
Query: 435 VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493
V + + G+ L S S D +++VW+ +G + ++ F S L+
Sbjct: 1013 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDY------VFLQAHQETVKDFRLLQDSRLL 1066
Query: 494 IGCYE-TLELWNMTENKT-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
++ T+++WN+ + + H V S A S+ +S S DK KIW
Sbjct: 1067 SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 100/255 (39%), Gaps = 24/255 (9%)
Query: 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 323
++V C SP + +A G D + + V S+ H + + ++F+ L +S
Sbjct: 969 AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISS 1028
Query: 324 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383
S D ++VW+ + DY H TV DF ++ L S + ++ W++ G
Sbjct: 1029 SEDSVIQVWNWQTGDYVF--LQAHQETVK--DFRLLQDSRLLSWSFDGTVKVWNVITGRI 1084
Query: 384 AGVFKCQSGAT-QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 442
F C G + + + + I + +L+GH V ++
Sbjct: 1085 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL 1144
Query: 443 SGEYLASVSDE-LVRVWSIGSGSKGECIHELSCT-----------GNKFHSCVFHPTFPS 490
G LA+ D +R+W++ S G+ +H SC G F P +
Sbjct: 1145 DGILLATGDDNGEIRIWNV---SDGQLLH--SCAPISVEEGTATHGGWVTDVCFSPDSKT 1199
Query: 491 LLVIGCYETLELWNM 505
L+ G Y L+ WN+
Sbjct: 1200 LVSAGGY--LKWWNV 1212
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 121/287 (42%), Gaps = 40/287 (13%)
Query: 243 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 302
++ +V K T + I A +V C FS D + +AT DKK +W + + + T +
Sbjct: 643 KTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYD 702
Query: 303 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 360
EH++ + F+ S LAT S+D +++WD N T GH+ +V F P
Sbjct: 703 EHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPD- 760
Query: 361 EDLLCSCDNNSEIRYW---------SIN-----------NGSCAGVFKCQSGATQMRFQP 400
+ LL SC + ++ W SIN + KC S +
Sbjct: 761 DKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADG---- 816
Query: 401 RLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASV--SDELVRV 457
RI+ AA +N I + D+ T ++ GH + + C + +LA V S V +
Sbjct: 817 --ARIMVAA-KNKIFLFDIHTSGLLGEIHTGHHSTIQ-YCDFSPQNHLAVVALSQYCVEL 872
Query: 458 WSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 503
W+ S SK +C LS H +F P S L +T+ LW
Sbjct: 873 WNTDSRSKVADCRGHLSWV----HGVMFSPDGSSFLTSSDDQTIRLW 915
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 118/286 (41%), Gaps = 19/286 (6%)
Query: 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 323
S ++ C FSP L LW T+S + + H W+ V FSP S TS
Sbjct: 847 STIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS 906
Query: 324 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383
S D+T+R+W+T+ + V+ E ++ + D+ IR + NG
Sbjct: 907 SDDQTIRLWETKKVCKNSAVMLKQEVDVV----FQENEVMVLAVDH---IRRLQLINGRT 959
Query: 384 AGV-FKCQSGATQMRFQPRLGRILAAAIENYISILD-VETQVCRLKLQGHKNQVHSVCWN 441
+ + ++ + P L I I IL+ V ++ + + Q HK V + +
Sbjct: 960 GQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQ-HKKTVWHIQFT 1018
Query: 442 TSGEYLASVSDEL-VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-T 499
+ L S SD+ ++VW + +CI G++ F S L+ ++ T
Sbjct: 1019 ADEKTLISSSDDAEIQVW---NWQLDKCIF---LRGHQETVKDFRLLKNSRLLSWSFDGT 1072
Query: 500 LELWN-MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
+++WN +T NK H V S S +S S DK KIW
Sbjct: 1073 VKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIW 1118
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/305 (20%), Positives = 124/305 (40%), Gaps = 26/305 (8%)
Query: 260 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 319
P + + +C FS DG+ +A+ G DK ++ E+ ++ H + FS
Sbjct: 619 PHTDAVYHAC-FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRF 677
Query: 320 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC-DNNSEIRYWSI 378
+AT S D+ V++W++ + + T+ HS V F S LL + ++ ++ W +
Sbjct: 678 IATCSVDKKVKIWNSMTGEL-VHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 736
Query: 379 NNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILD---------VETQVCRLKL 428
N C +F + RF P + + + + + + D + + L L
Sbjct: 737 NQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNL 796
Query: 429 QGHKNQVHSVC----WNTSGEYLASVSDELVRVWSIG-SGSKGECIHELSCTGNK--FHS 481
+ + + + W+ G + + + ++ I SG GE IH TG+
Sbjct: 797 EDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGE-IH----TGHHSTIQY 851
Query: 482 CVFHPTFPSLLVIGCYETLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 540
C F P +V +ELWN + +K H V + S ++S D+
Sbjct: 852 CDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQT 911
Query: 541 VKIWK 545
+++W+
Sbjct: 912 IRLWE 916
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 10/129 (7%)
Query: 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 325
V SC S D ++ DK A +W + L H + FS + LAT
Sbjct: 1094 VLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDD 1153
Query: 326 DRTVRVWDTENPD-------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 378
+ +R+W+ N + S H V L F P + L+ + I++W++
Sbjct: 1154 NGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISA---GGYIKWWNV 1210
Query: 379 NNGSCAGVF 387
G + F
Sbjct: 1211 VTGESSQTF 1219
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/292 (19%), Positives = 123/292 (42%), Gaps = 19/292 (6%)
Query: 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 323
+K+ + H+ D +LL + D K ++W + + + + W+ ++PS + +A
Sbjct: 67 AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 126
Query: 324 SADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380
D +++ + + ++R GH+ + F + + S D + W I
Sbjct: 127 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL--WDIET 184
Query: 381 GSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 439
G F +G + P ++ A + + DV +CR GH++ ++++C
Sbjct: 185 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 244
Query: 440 WNTSGEYLASVSDELV-RVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPS--LLVIG 495
+ +G A+ SD+ R++ + + EL + C + +F L++
Sbjct: 245 FFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSVSFSKSGRLLLA 298
Query: 496 CYETLE--LWN-MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
Y+ +W+ + ++ L+ HD VS L + VA+ S D +KIW
Sbjct: 299 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S +PD +L +G D A LW + T H I + F P+ + AT
Sbjct: 195 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 254
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLLCSCDN 369
S D T R++D D L T++ + + S+ F S LL D+
Sbjct: 255 GSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 302
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/292 (19%), Positives = 123/292 (42%), Gaps = 19/292 (6%)
Query: 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 323
+K+ + H+ D +LL + D K ++W + + + + W+ ++PS + +A
Sbjct: 56 AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115
Query: 324 SADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380
D +++ + + ++R GH+ + F + + S D + W I
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL--WDIET 173
Query: 381 GSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 439
G F +G + P ++ A + + DV +CR GH++ ++++C
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Query: 440 WNTSGEYLASVSDELV-RVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPS--LLVIG 495
+ +G A+ SD+ R++ + + EL + C + +F L++
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 496 CYETLE--LWN-MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
Y+ +W+ + ++ L+ HD VS L + VA+ S D +KIW
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S +PD +L +G D A LW + T H I + F P+ + AT
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLLCSCDN 369
S D T R++D D L T++ + + S+ F S LL D+
Sbjct: 244 GSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/292 (19%), Positives = 123/292 (42%), Gaps = 19/292 (6%)
Query: 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 323
+K+ + H+ D +LL + D K ++W + + + + W+ ++PS + +A
Sbjct: 56 AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115
Query: 324 SADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380
D +++ + + ++R GH+ + F + + S D + W I
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL--WDIET 173
Query: 381 GSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 439
G F +G + P ++ A + + DV +CR GH++ ++++C
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Query: 440 WNTSGEYLASVSDELV-RVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPS--LLVIG 495
+ +G A+ SD+ R++ + + EL + C + +F L++
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 496 CYETLE--LWN-MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
Y+ +W+ + ++ L+ HD VS L + VA+ S D +KIW
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S +PD +L +G D A LW + T H I + F P+ + AT
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLLCSCDN 369
S D T R++D D L T++ + + S+ F S LL D+
Sbjct: 244 GSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/292 (19%), Positives = 123/292 (42%), Gaps = 19/292 (6%)
Query: 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 323
+K+ + H+ D +LL + D K ++W + + + + W+ ++PS + +A
Sbjct: 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115
Query: 324 SADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380
D +++ + + ++R GH+ + F + + S D + W I
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL--WDIET 173
Query: 381 GSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 439
G F +G + P ++ A + + DV +CR GH++ ++++C
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Query: 440 WNTSGEYLASVSDELV-RVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPS--LLVIG 495
+ +G A+ SD+ R++ + + EL + C + +F L++
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 496 CYETLE--LWN-MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
Y+ +W+ + ++ L+ HD VS L + VA+ S D +KIW
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S +PD +L +G D A LW + T H I + F P+ + AT
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLLCSCDN 369
S D T R++D D L T++ + + S+ F S LL D+
Sbjct: 244 GSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/292 (19%), Positives = 123/292 (42%), Gaps = 19/292 (6%)
Query: 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 323
+K+ + H+ D +LL + D K ++W + + + + W+ ++PS + +A
Sbjct: 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115
Query: 324 SADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380
D +++ + + ++R GH+ + F + + S D + W I
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL--WDIET 173
Query: 381 GSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 439
G F +G + P ++ A + + DV +CR GH++ ++++C
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Query: 440 WNTSGEYLASVSDELV-RVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPS--LLVIG 495
+ +G A+ SD+ R++ + + EL + C + +F L++
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 496 CYETLE--LWN-MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
Y+ +W+ + ++ L+ HD VS L + VA+ S D +KIW
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S +PD +L +G D A LW + T H I + F P+ + AT
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLLCSCDN 369
S D T R++D D L T++ + + S+ F S LL D+
Sbjct: 244 GSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 16/138 (11%)
Query: 257 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 314
L+ A T++V F+P + +LATG DK LW + +K T E H I V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 315 P-SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSK 360
P + + LA+S DR + VWD + P L GH+ + ++P++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 361 EDLLCSCDNNSEIRYWSI 378
++CS ++ ++ W +
Sbjct: 389 PWVICSVSEDNIMQIWQM 406
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 5/127 (3%)
Query: 277 LLATGGHDKKAVLWCTESFTVKST---LEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 332
L + D+K ++W T S T ++ HT + + F+P S LAT SAD+TV +W
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 333 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQS 391
D N L TF H + + + P E +L S + + W ++ G +
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 363
Query: 392 GATQMRF 398
G ++ F
Sbjct: 364 GPPELLF 370
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 14/156 (8%)
Query: 319 RLATSSADRTVRVWDTENPDYSLRT------FTGHSTTVMSLDFHPSKEDLLCSCDNNSE 372
L ++S D TV +WD + FTGHS V + +H E L S ++ +
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 373 IRYWSINNGSCAGVFKCQSGATQ----MRFQPRLGRILA-AAIENYISILDVETQVCRLK 427
+ W + + + T + F P ILA + + +++ D+ +L
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 428 -LQGHKNQVHSVCWNTSGEYL--ASVSDELVRVWSI 460
+ HK+++ V W+ E + +S +D + VW +
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 35/196 (17%)
Query: 381 GSCAGVFKCQ------SGATQMRFQPRLGRILAAAIENY-ISILDVETQVCR-------- 425
GS G +C+ + R+ P+ I+A + + + D +
Sbjct: 111 GSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECN 170
Query: 426 --LKLQGHKNQVHSVCWNT--SGEYLASVSDELVRVWSIGSGSKGECIHELSC--TGNKF 479
L+L+GH+ + + + WN+ SG L++ D V +W I +G K I + TG
Sbjct: 171 PDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTG--- 227
Query: 480 HSCVFHPTFPSLLVIGCY------ETLELW----NMTENKTLTLSAHDKLVSSLAASTVN 529
HS V LL + + L +W N T + + AH V+ L+ + +
Sbjct: 228 HSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYS 287
Query: 530 GMV-ASASHDKCVKIW 544
+ A+ S DK V +W
Sbjct: 288 EFILATGSADKTVALW 303
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 90/213 (42%), Gaps = 5/213 (2%)
Query: 252 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 311
T E + I + + V + F + G D + ++ + E H +I +
Sbjct: 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 312 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 371
P+ + + S D TV++W+ EN +TF GH VM + F+P S +
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 372 EIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLK 427
++ WS+ + + G + + P + ++ A+ + I I D +T+ C
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 428 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 459
L+GH + V ++ + + S S D +++W+
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 18/214 (8%)
Query: 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR---F 398
+TF+ S V +DFHP++ +L + + + W N + V Q T +R F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVEIW--NYETQVEVRSIQVTETPVRAGKF 63
Query: 399 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL-VRV 457
R I+ + + I + + T + + H + + S+ + + Y+ S SD+L V++
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 458 WSIGSGSKGECIHELSCTGNKFHSCV-FHPTFPSLLVIGCYE-TLELWNM---TENKTLT 512
W+ + E E F CV F+P PS GC + T+++W++ T N TLT
Sbjct: 124 WNWENNWALEQTFE---GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 513 LSAHDKLVSSLAASTV--NGMVASASHDKCVKIW 544
+ ++ V+ + + + +AS D +KIW
Sbjct: 181 -TGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 273 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 332
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 333 DT 334
++
Sbjct: 256 NS 257
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 90/213 (42%), Gaps = 5/213 (2%)
Query: 252 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 311
T E + I + + V + F + G D + ++ + E H +I +
Sbjct: 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 312 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 371
P+ + + S D TV++W+ EN +TF GH VM + F+P S +
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 372 EIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLK 427
++ WS+ + + G + + P + ++ A+ + I I D +T+ C
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 428 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 459
L+GH + V ++ + + S S D +++W+
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 18/214 (8%)
Query: 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR---F 398
+TF+ S V +DFHP++ +L + + + W N + V Q T +R F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELW--NYETQVEVRSIQVTETPVRAGKF 63
Query: 399 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL-VRV 457
R I+ + + I + + T + + H + + S+ + + Y+ S SD+L V++
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 458 WSIGSGSKGECIHELSCTGNKFHSCV-FHPTFPSLLVIGCYE-TLELWNM---TENKTLT 512
W+ + E E F CV F+P PS GC + T+++W++ T N TLT
Sbjct: 124 WNWENNWALEQTFE---GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 513 LSAHDKLVSSLAASTV--NGMVASASHDKCVKIW 544
+ ++ V+ + + + +AS D +KIW
Sbjct: 181 -TGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 273 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 332
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 333 DT 334
++
Sbjct: 256 NS 257
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 74/164 (45%), Gaps = 5/164 (3%)
Query: 301 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 360
E H +I + P+ + + S D TV++W+ EN +TF GH VM + F+P
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 361 EDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGR--ILAAAIENYISI 416
S + ++ WS+ + + G + + P + ++ A+ + I I
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 417 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 459
D +T+ C L+GH + V ++ + + S S D +++W+
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 18/214 (8%)
Query: 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR---F 398
+TF+ S V +DFHP++ +L + + + W N + V Q T +R F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELW--NYETQVEVRSIQVTETPVRAGKF 63
Query: 399 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL-VRV 457
R I+ + + I + + T + + H + + S+ + + Y+ S SD+L V++
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 458 WSIGSGSKGECIHELSCTGNKFHSCV-FHPTFPSLLVIGCYE-TLELWNM---TENKTLT 512
W+ + E E F CV F+P PS GC + T+++W++ T N TLT
Sbjct: 124 WNWENNWALEQTFE---GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 513 LSAHDKLVSSLAASTV--NGMVASASHDKCVKIW 544
+ ++ V+ + + + +AS D +KIW
Sbjct: 181 -TGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 273 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 332
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 333 DT 334
++
Sbjct: 256 NS 257
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 74/164 (45%), Gaps = 5/164 (3%)
Query: 301 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 360
E H +I + P+ + + S D TV++W+ EN +TF GH VM + F+P
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 361 EDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGR--ILAAAIENYISI 416
S + ++ WS+ + + G + + P + ++ A+ + I I
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 417 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 459
D +T+ C L+GH + V ++ + + S S D +++W+
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 18/214 (8%)
Query: 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR---F 398
+TF+ S V +DFHP++ +L + + + W N + V Q T +R F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELW--NYETQVEVRSIQVTETPVRAGKF 63
Query: 399 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL-VRV 457
R I+ + + I + + T + + H + + S+ + + Y+ S SD+L V++
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 458 WSIGSGSKGECIHELSCTGNKFHSCV-FHPTFPSLLVIGCYE-TLELWNM---TENKTLT 512
W+ + E E F CV F+P PS GC + T+++W++ T N TLT
Sbjct: 124 WNWENNWALEQTFE---GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 513 LSAHDKLVSSLAASTV--NGMVASASHDKCVKIW 544
+ ++ V+ + + + +AS D +KIW
Sbjct: 181 -TGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 273 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 332
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 333 DT 334
++
Sbjct: 256 NS 257
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 16/136 (11%)
Query: 257 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 314
L+ A T++V F+P + +LATG DK LW + +K T E H I V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 315 P-SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSK 360
P + + LA+S DR + VWD + P L GH+ + ++P++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 361 EDLLCSCDNNSEIRYW 376
++CS ++ + W
Sbjct: 389 PWVICSVSEDNIXQIW 404
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Query: 277 LLATGGHDKKAVLWCTESFTVKST---LEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 332
L + D+K +W T S T ++ HT + + F+P S LAT SAD+TV +W
Sbjct: 244 LFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 333 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQS 391
D N L TF H + + + P E +L S + + W ++ G +
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 363
Query: 392 GATQMRF 398
G ++ F
Sbjct: 364 GPPELLF 370
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 14/156 (8%)
Query: 319 RLATSSADRTVRVWDTE-NPDY-----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 372
L ++S D TV +WD P + FTGHS V + +H E L S ++ +
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 373 IRYWSINNGSCAGVFKCQSGATQ----MRFQPRLGRILA-AAIENYISILDVETQVCRLK 427
+ W + + + T + F P ILA + + +++ D+ +L
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 428 -LQGHKNQVHSVCWNTSGEYL--ASVSDELVRVWSI 460
+ HK+++ V W+ E + +S +D + VW +
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 82/196 (41%), Gaps = 35/196 (17%)
Query: 381 GSCAGVFKCQ------SGATQMRFQPRLGRILAAAIENY-ISILDVETQVCR-------- 425
GS G +C+ + R+ P+ I+A + + + D +
Sbjct: 111 GSVTGKIECEIKINHEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECN 170
Query: 426 --LKLQGHKNQVHSVCWNT--SGEYLASVSDELVRVWSIGSGSKGECIHELSC--TGNKF 479
L+L+GH+ + + + WN+ SG L++ D V +W I +G K I + TG
Sbjct: 171 PDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTG--- 227
Query: 480 HSCV-----FHPTFPSLL-VIGCYETLELW----NMTENKTLTLSAHDKLVSSLAASTVN 529
HS V +H SL + + L +W N T + + AH V+ L+ + +
Sbjct: 228 HSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYS 287
Query: 530 GMV-ASASHDKCVKIW 544
+ A+ S DK V +W
Sbjct: 288 EFILATGSADKTVALW 303
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 259 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 315
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 277 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 336
Query: 316 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 362
+ + LA+S DR + VWD TE+ P L GH+ + ++P++
Sbjct: 337 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 396
Query: 363 LLCSCDNNSEIRYWSI 378
++CS ++ ++ W +
Sbjct: 397 IICSVSEDNIMQVWQM 412
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 5/127 (3%)
Query: 277 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 332
L + D+K ++W T + T++ HT + + F+P S LAT SAD+TV +W
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 333 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQS 391
D N L +F H + + + P E +L S + + W ++ G +
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 369
Query: 392 GATQMRF 398
G ++ F
Sbjct: 370 GPPELLF 376
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 18/134 (13%)
Query: 426 LKLQGHKNQVHSVCWNT--SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF--HS 481
L+L+GH+ + + + WN +G L++ D + +W I + K H + N F H+
Sbjct: 179 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE---HRVIDAKNIFTGHT 235
Query: 482 CV-----FHPTFPSLL-VIGCYETLELWNMTENKT----LTLSAHDKLVSSLAASTVNGM 531
V +H SL + + L +W+ N T T+ AH V+ L+ + +
Sbjct: 236 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 295
Query: 532 V-ASASHDKCVKIW 544
+ A+ S DK V +W
Sbjct: 296 ILATGSADKTVALW 309
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 22/186 (11%)
Query: 298 KSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSL--RTFTGHSTTVMSL 354
K+ HT + DV + L S AD + + +WDT N + S T H+ V L
Sbjct: 228 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 287
Query: 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKCQSGAT-QMRFQPRLGRILAAA--- 409
F+P E +L + + + W + N F+ Q+++ P ILA++
Sbjct: 288 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 347
Query: 410 ----------IENYISILDVETQVCRLKL--QGHKNQVHSVCWNTSGEY-LASVS-DELV 455
I S D E L GH ++ WN + + + SVS D ++
Sbjct: 348 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 407
Query: 456 RVWSIG 461
+VW +
Sbjct: 408 QVWQMA 413
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 259 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 315
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 275 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 334
Query: 316 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 362
+ + LA+S DR + VWD TE+ P L GH+ + ++P++
Sbjct: 335 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 394
Query: 363 LLCSCDNNSEIRYWSI 378
++CS ++ ++ W +
Sbjct: 395 IICSVSEDNIMQVWQM 410
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 5/127 (3%)
Query: 277 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 332
L + D+K ++W T + T++ HT + + F+P S LAT SAD+TV +W
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 333 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQS 391
D N L +F H + + + P E +L S + + W ++ G +
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 367
Query: 392 GATQMRF 398
G ++ F
Sbjct: 368 GPPELLF 374
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 18/134 (13%)
Query: 426 LKLQGHKNQVHSVCWNT--SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF--HS 481
L+L+GH+ + + + WN +G L++ D + +W I + K H + N F H+
Sbjct: 177 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE---HRVIDAKNIFTGHT 233
Query: 482 CV-----FHPTFPSLL-VIGCYETLELWNMTENKT----LTLSAHDKLVSSLAASTVNGM 531
V +H SL + + L +W+ N T T+ AH V+ L+ + +
Sbjct: 234 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 293
Query: 532 V-ASASHDKCVKIW 544
+ A+ S DK V +W
Sbjct: 294 ILATGSADKTVALW 307
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 22/186 (11%)
Query: 298 KSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSL--RTFTGHSTTVMSL 354
K+ HT + DV + L S AD + + +WDT N + S T H+ V L
Sbjct: 226 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 285
Query: 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKCQSGAT-QMRFQPRLGRILAAA--- 409
F+P E +L + + + W + N F+ Q+++ P ILA++
Sbjct: 286 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 345
Query: 410 ----------IENYISILDVETQVCRLKL--QGHKNQVHSVCWNTSGEY-LASVS-DELV 455
I S D E L GH ++ WN + + + SVS D ++
Sbjct: 346 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 405
Query: 456 RVWSIG 461
+VW +
Sbjct: 406 QVWQMA 411
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 259 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 315
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 332
Query: 316 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 362
+ + LA+S DR + VWD TE+ P L GH+ + ++P++
Sbjct: 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 392
Query: 363 LLCSCDNNSEIRYWSI 378
++CS ++ ++ W +
Sbjct: 393 IICSVSEDNIMQVWQM 408
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 5/127 (3%)
Query: 277 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 332
L + D+K ++W T + T++ HT + + F+P S LAT SAD+TV +W
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 333 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQS 391
D N L +F H + + + P E +L S + + W ++ G +
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 365
Query: 392 GATQMRF 398
G ++ F
Sbjct: 366 GPPELLF 372
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 18/134 (13%)
Query: 426 LKLQGHKNQVHSVCWNT--SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF--HS 481
L+L+GH+ + + + WN +G L++ D + +W I + K H + N F H+
Sbjct: 175 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE---HRVIDAKNIFTGHT 231
Query: 482 CVFHPTFPSLLVIGCY------ETLELWNMTENKT----LTLSAHDKLVSSLAASTVNGM 531
V LL + + L +W+ N T T+ AH V+ L+ + +
Sbjct: 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 291
Query: 532 V-ASASHDKCVKIW 544
+ A+ S DK V +W
Sbjct: 292 ILATGSADKTVALW 305
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 22/186 (11%)
Query: 298 KSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSL--RTFTGHSTTVMSL 354
K+ HT + DV + L S AD + + +WDT N + S T H+ V L
Sbjct: 224 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 283
Query: 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKCQSGAT-QMRFQPRLGRILAAA--- 409
F+P E +L + + + W + N F+ Q+++ P ILA++
Sbjct: 284 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 343
Query: 410 ----------IENYISILDVETQVCRLKL--QGHKNQVHSVCWNTSGEY-LASVS-DELV 455
I S D E L GH ++ WN + + + SVS D ++
Sbjct: 344 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 403
Query: 456 RVWSIG 461
+VW +
Sbjct: 404 QVWQMA 409
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 259 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 315
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 316 SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSKED 362
+ + LA+S DR + VWD + P L GH+ + ++P++
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 388
Query: 363 LLCSCDNNSEIRYWSI 378
++CS ++ ++ W +
Sbjct: 389 VICSVSEDNIMQVWQM 404
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 5/127 (3%)
Query: 277 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 332
L + D+K ++W T S +++ HT + + F+P S LAT SAD+TV +W
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 333 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQS 391
D N L +F H + + + P E +L S + + W ++ G +
Sbjct: 302 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAED 361
Query: 392 GATQMRF 398
G ++ F
Sbjct: 362 GPPELLF 368
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 18/134 (13%)
Query: 426 LKLQGHKNQVHSVCWNT--SGEYLASVSDELVRVWSIGSGSK-GECIHELSC-TGNKFHS 481
L+L+GH+ + + + WN SG L++ D + +W I + K G+ + + TG H+
Sbjct: 171 LRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTG---HT 227
Query: 482 CV-----FHPTFPSLL-VIGCYETLELWNMTENKT----LTLSAHDKLVSSLAASTVNGM 531
V +H SL + + L +W+ N T ++ AH V+ L+ + +
Sbjct: 228 AVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEF 287
Query: 532 V-ASASHDKCVKIW 544
+ A+ S DK V +W
Sbjct: 288 ILATGSADKTVALW 301
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 22/186 (11%)
Query: 298 KSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTE--NPDYSLRTFTGHSTTVMSL 354
K+ HT + DV + L S AD + + +WDT N + H+ V L
Sbjct: 220 KTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCL 279
Query: 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKCQSGAT-QMRFQPRLGRILAAA--- 409
F+P E +L + + + W + N F+ Q+++ P ILA++
Sbjct: 280 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 339
Query: 410 ----------IENYISILDVETQVCRLKL--QGHKNQVHSVCWNTSGEY-LASVS-DELV 455
I S D E L GH ++ WN + + + SVS D ++
Sbjct: 340 RRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 399
Query: 456 RVWSIG 461
+VW +
Sbjct: 400 QVWQMA 405
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 23/185 (12%)
Query: 304 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 361
H + I D RLAT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 69
Query: 362 DLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 416
+L SC + ++ W NG + V + Q +L A+ + +S+
Sbjct: 70 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 129
Query: 417 LDVETQ--VCRLKLQGHKNQVHSVCW--------------NTSGEYLASVSDELVRVWSI 460
++ + + + H V+S W S +++ +D LV++W
Sbjct: 130 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 189
Query: 461 GSGSK 465
S ++
Sbjct: 190 NSDAQ 194
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 260 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 315
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216
Query: 316 SL---SRLATSSADRTVRVWDTEN 336
++ S LA+ S DRT +W +N
Sbjct: 217 TVLLRSYLASVSQDRTCIIWTQDN 240
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 83/215 (38%), Gaps = 30/215 (13%)
Query: 275 GKLLATGGHDKKAVLWCTESFTVK--STLEEHTQ--WITDVRFSPSLSRLATSSADRTVR 330
GK LAT DK ++ E T K TL H W D + LA+ S D V
Sbjct: 23 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 331 VWDTENPDYS-LRTFTGHSTTVMSLDFHPSKED---LLCSCDNNSEIRYWSINNGSCAGV 386
+W EN +S + HS +V S+ + P + L+ S D + + N + +
Sbjct: 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 142
Query: 387 FKCQS-GATQMRFQPRL-------------GRILAAAIENYISIL----DVETQVCRLKL 428
+ G + P + + +N + I D +T V L
Sbjct: 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 202
Query: 429 QGHKNQVHSVCWNTS---GEYLASVS-DELVRVWS 459
+GH + V V W+ + YLASVS D +W+
Sbjct: 203 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 23/185 (12%)
Query: 304 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 361
H + I D RLAT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 362 DLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 416
+L SC + ++ W NG + V + Q +L A+ + +S+
Sbjct: 68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127
Query: 417 LDVETQ--VCRLKLQGHKNQVHSVCW--------------NTSGEYLASVSDELVRVWSI 460
++ + + + H V+S W S +++ +D LV++W
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 461 GSGSK 465
S ++
Sbjct: 188 NSDAQ 192
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 260 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 315
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 316 SL---SRLATSSADRTVRVWDTEN 336
++ S LA+ S DRT +W +N
Sbjct: 215 TVLLRSYLASVSQDRTCIIWTQDN 238
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 83/215 (38%), Gaps = 30/215 (13%)
Query: 275 GKLLATGGHDKKAVLWCTESFTVK--STLEEHTQ--WITDVRFSPSLSRLATSSADRTVR 330
GK LAT DK ++ E T K TL H W D + LA+ S D V
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 331 VWDTENPDYS-LRTFTGHSTTVMSLDFHPSKED---LLCSCDNNSEIRYWSINNGSCAGV 386
+W EN +S + HS +V S+ + P + L+ S D + + N + +
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140
Query: 387 FKCQS-GATQMRFQPRL-------------GRILAAAIENYISIL----DVETQVCRLKL 428
+ G + P + + +N + I D +T V L
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 429 QGHKNQVHSVCWNTS---GEYLASVS-DELVRVWS 459
+GH + V V W+ + YLASVS D +W+
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 23/185 (12%)
Query: 304 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 361
H + I D RLAT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 362 DLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 416
+L SC + ++ W NG + V + Q +L A+ + +S+
Sbjct: 68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127
Query: 417 LDVETQ--VCRLKLQGHKNQVHSVCW--------------NTSGEYLASVSDELVRVWSI 460
++ + + + H V+S W S +++ +D LV++W
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 461 GSGSK 465
S ++
Sbjct: 188 NSDAQ 192
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 260 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 315
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 316 SL---SRLATSSADRTVRVWDTEN 336
++ S LA+ S DRT +W +N
Sbjct: 215 TVLLRSYLASVSQDRTCIIWTQDN 238
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 83/215 (38%), Gaps = 30/215 (13%)
Query: 275 GKLLATGGHDKKAVLWCTESFTVK--STLEEHT--QWITDVRFSPSLSRLATSSADRTVR 330
GK LAT DK ++ E T K TL H W D + LA+ S D V
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 331 VWDTENPDYS-LRTFTGHSTTVMSLDFHPSKED---LLCSCDNNSEIRYWSINNGSCAGV 386
+W EN +S + HS +V S+ + P + L+ S D + + N + +
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140
Query: 387 FKCQS-GATQMRFQP-------------RLGRILAAAIENYISIL----DVETQVCRLKL 428
+ G + P + + +N + I D +T V L
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 429 QGHKNQVHSVCWNTS---GEYLASVS-DELVRVWS 459
+GH + V V W+ + YLASVS D +W+
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 77/185 (41%), Gaps = 23/185 (12%)
Query: 304 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 361
H + I D R+AT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 362 DLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 416
+L SC + ++ W NG + V + Q +L A+ + +S+
Sbjct: 68 TILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSV 127
Query: 417 LDVETQ--VCRLKLQGHKNQVHSVCW--------------NTSGEYLASVSDELVRVWSI 460
++ + + + H V+S W S +++ +D LV++W
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 461 GSGSK 465
S ++
Sbjct: 188 NSDAQ 192
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 260 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 315
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 316 SL---SRLATSSADRTVRVWDTEN 336
++ S +A+ S DRT +W +N
Sbjct: 215 TVLLRSYMASVSQDRTCIIWTQDN 238
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 83/215 (38%), Gaps = 30/215 (13%)
Query: 275 GKLLATGGHDKKAVLWCTESFTVK--STLEEHTQ--WITDVRFSPSLSRLATSSADRTVR 330
GK +AT DK ++ E T K TL H W D + LA+ S D V
Sbjct: 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80
Query: 331 VWDTENPDYS-LRTFTGHSTTVMSLDFHPSKED---LLCSCDNNSEIRYWSINNGSCAGV 386
+W EN +S + HS +V S+ + P + L+ S D + + N + +
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPII 140
Query: 387 FKCQS-GATQMRFQPRL-------------GRILAAAIENYISIL----DVETQVCRLKL 428
+ G + P + + +N + I D +T V L
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 429 QGHKNQVHSVCWNTS---GEYLASVS-DELVRVWS 459
+GH + V V W+ + Y+ASVS D +W+
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 90/202 (44%), Gaps = 3/202 (1%)
Query: 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 325
VE S DG+ +G D + LW + HT+ + V FS ++ ++S
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 326 DRTVRVWDTENP-DYSL-RTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGS 382
DRT+++W+T Y++ GH V + F P+ + + S + ++ W+++N
Sbjct: 493 DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552
Query: 383 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 442
+G G + A+ ++ + +L + +L + +H++C++
Sbjct: 553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSP 612
Query: 443 SGEYLASVSDELVRVWSIGSGS 464
+ +L + ++ +++W + S S
Sbjct: 613 NRYWLCAATEHGIKIWDLESKS 634
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V + SPDG L A+GG D +LW +LE ++ I + FSP+ L
Sbjct: 561 TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFSPNRYWLCA 619
Query: 323 SSADRTVRVWDTEN 336
++ + +++WD E+
Sbjct: 620 AT-EHGIKIWDLES 632
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 423 VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 481
V + +L GH + V V ++ G++ S S D +R+W + +G S
Sbjct: 421 VAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV---STRRFVGHTKDVLS 477
Query: 482 CVFHPTFPSLLVIGCYETLELWNMTENKTLTLS----AHDKLVS--SLAASTVNGMVASA 535
F ++ T++LWN T+S H VS + +T+ + SA
Sbjct: 478 VAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA 537
Query: 536 SHDKCVKIW 544
S DK VK+W
Sbjct: 538 SWDKTVKVW 546
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 452 DELVRVWSIGSGSKGECIHELSCTGNK-FHSCVFHPTFPSLLVIGCYE-TLELWNMTEN- 508
D+ + +W + K + + TG+ F V + + G ++ L LW++
Sbjct: 404 DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV 463
Query: 509 KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
T H K V S+A S N + SAS D+ +K+W
Sbjct: 464 STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW 499
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 272 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 331
S G ++ +G +D ++W L HT I + R ++S D T+R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 332 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
WD EN + + T GH+ V L + L S + IR W N+ S
Sbjct: 337 WDLENGEL-MYTLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDANDYS 383
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 118/288 (40%), Gaps = 48/288 (16%)
Query: 290 WCTESFT-VKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 347
W F ++TL H T IT ++F + + T + D+ +RV+D+ N + L+ +GH
Sbjct: 105 WYNPKFVPQRTTLRGHMTSVITCLQFEDNY--VITGADDKMIRVYDSINKKFLLQ-LSGH 161
Query: 348 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ---MRFQPRLGR 404
V +L + + +L S + +R W I G C VF+ + + + +
Sbjct: 162 DGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY 219
Query: 405 ILAAAIENYISILDV-----------------------ETQVCRLKLQGHKNQVHSVCWN 441
I+ + +N + + + E L+GH V +V +
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 279
Query: 442 ----TSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 497
SG Y D + VW + ++ +C++ LS ++ +S ++ +
Sbjct: 280 GNIVVSGSY-----DNTLIVWDV---AQMKCLYILSGHTDRIYSTIYDHERKRCISASMD 331
Query: 498 ETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
T+ +W++ + + TL H LV L S + + SA+ D ++ W
Sbjct: 332 TTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGW 377
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 258 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317
++ T ++ S + + K + D +W E+ + TL+ HT + +R S
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF 364
Query: 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 377
L +++AD ++R WD DYS R F+ H T + ++ +++L S N + ++
Sbjct: 365 --LVSAAADGSIRGWDAN--DYS-RKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYN 418
Query: 378 INNGSC--AGVFKCQSGATQMRFQPRLGRILAAAIE----NYISILD 418
+ +G A + K + F+ G+ L AA+E +++ ILD
Sbjct: 419 LRSGKLVHANILKDADQIWSVNFK---GKTLVAAVEKDGQSFLEILD 462
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 110/263 (41%), Gaps = 31/263 (11%)
Query: 293 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 345
E ++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 346 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR 404
GHS V L S + +R W + G F +S + +
Sbjct: 63 GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 405 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSV-------CWNTSGEYLASVSDELVRV 457
I++ + + I + ++ Q C L GH + V V + S +++ +D++V+
Sbjct: 122 IISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 458 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 516
W++ ++ + + + ++ P + G + LWN+ K + TLSA
Sbjct: 181 WNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 517 DKLVS--------SLAASTVNGM 531
D++ S LAA+T G+
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGI 260
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/250 (19%), Positives = 82/250 (32%), Gaps = 57/250 (22%)
Query: 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 325
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 326 DRTVRVWDT-----------------------ENPD-----------------YSLRT-- 343
D+T++VW E D ++L
Sbjct: 128 DKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 344 ----FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ 399
F GH++ + +L P L+ S + EI W++ Q + F
Sbjct: 188 IEADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
Query: 400 PRLGRILAAAIENYISILDVETQV----CRLKLQGHKNQVH----SVCWNTSGEYL-ASV 450
P LAAA I + ++ Q R + G+ S+ W+ G+ L A
Sbjct: 247 PNR-YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305
Query: 451 SDELVRVWSI 460
+D ++RVW +
Sbjct: 306 TDNVIRVWQV 315
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
Query: 249 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 305
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 357
+ + + FSP+ LA ++A ++V+ + +P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVF-SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 358 PSKEDLLCSCDNNSEIRYWSI 378
+ L +N IR W +
Sbjct: 296 ADGQTLFAGYTDNV-IRVWQV 315
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 7/131 (5%)
Query: 420 ETQVCRLKLQGHKNQVHSVCWNTSGE---YLASVSDELVRVWSI-GSGSK-GECIHELSC 474
E V R L+GH V S+ ++G+ L++ D+ + W + G K G +
Sbjct: 5 EVLVLRGTLEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG 63
Query: 475 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVA 533
+ C L +TL LW++ +T H V S+ M+
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 534 SASHDKCVKIW 544
S S DK +K+W
Sbjct: 124 SGSRDKTIKVW 134
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 110/263 (41%), Gaps = 31/263 (11%)
Query: 293 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 345
E ++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 346 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR 404
GHS V L S + +R W + G F +S + +
Sbjct: 63 GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 405 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSV-------CWNTSGEYLASVSDELVRV 457
I++ + + I + ++ Q C L GH + V V + S +++ +D++V+
Sbjct: 122 IISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 458 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 516
W++ ++ + + + ++ P + G + LWN+ K + TLSA
Sbjct: 181 WNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 517 DKLVS--------SLAASTVNGM 531
D++ S LAA+T G+
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGI 260
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 82/201 (40%), Gaps = 9/201 (4%)
Query: 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 325
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 326 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSINN 380
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 381 GSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 439
F S + P I +A + I + ++ + L +++V S+
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLA 244
Query: 440 WNTSGEYLASVSDELVRVWSI 460
++ + +LA+ + ++V+S+
Sbjct: 245 FSPNRYWLAAATATGIKVFSL 265
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
Query: 249 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 305
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 357
+ + + FSP+ LA ++A ++V+ + +P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVF-SLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWS 295
Query: 358 PSKEDLLCSCDNNSEIRYWSI 378
+ L +N IR W +
Sbjct: 296 ADGQTLFAGYTDNV-IRVWQV 315
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 7/131 (5%)
Query: 420 ETQVCRLKLQGHKNQVHSVCWNTSGE---YLASVSDELVRVWSI-GSGSK-GECIHELSC 474
E V R L+GH V S+ ++G+ L++ D+ + W + G K G +
Sbjct: 5 EVLVLRGTLEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG 63
Query: 475 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVA 533
+ C L +TL LW++ +T H V S+ M+
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 534 SASHDKCVKIW 544
S S DK +K+W
Sbjct: 124 SGSRDKTIKVW 134
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 110/263 (41%), Gaps = 31/263 (11%)
Query: 293 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 345
E ++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 346 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR 404
GHS V L S + +R W + G F +S + +
Sbjct: 63 GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 405 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSV-------CWNTSGEYLASVSDELVRV 457
I++ + + I + ++ Q C L GH + V V + S +++ +D++V+
Sbjct: 122 IISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 458 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 516
W++ ++ + + + ++ P + G + LWN+ K + TLSA
Sbjct: 181 WNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 517 DKLVS--------SLAASTVNGM 531
D++ S LAA+T G+
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGI 260
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/250 (19%), Positives = 82/250 (32%), Gaps = 57/250 (22%)
Query: 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 325
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 326 DRTVRVWDT-----------------------ENPD-----------------YSLRT-- 343
D+T++VW E D ++L
Sbjct: 128 DKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 344 ----FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ 399
F GH++ + +L P L+ S + EI W++ Q + F
Sbjct: 188 IEADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
Query: 400 PRLGRILAAAIENYISILDVETQV----CRLKLQGHKNQVH----SVCWNTSGEYL-ASV 450
P LAAA I + ++ Q R + G+ S+ W+ G+ L A
Sbjct: 247 PNR-YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305
Query: 451 SDELVRVWSI 460
+D ++RVW +
Sbjct: 306 TDNVIRVWQV 315
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
Query: 249 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 305
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 357
+ + + FSP+ LA ++A ++V+ + +P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVF-SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 358 PSKEDLLCSCDNNSEIRYWSI 378
+ L +N IR W +
Sbjct: 296 ADGQTLFAGYTDNV-IRVWQV 315
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 7/131 (5%)
Query: 420 ETQVCRLKLQGHKNQVHSVCWNTSGE---YLASVSDELVRVWSI-GSGSK-GECIHELSC 474
E V R L+GH V S+ ++G+ L++ D+ + W + G K G +
Sbjct: 5 EVLVLRGTLEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG 63
Query: 475 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVA 533
+ C L +TL LW++ +T H V S+ M+
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 534 SASHDKCVKIW 544
S S DK +K+W
Sbjct: 124 SGSRDKTIKVW 134
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 110/263 (41%), Gaps = 31/263 (11%)
Query: 293 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 345
E ++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 346 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR 404
GHS V L S + +R W + G F +S + +
Sbjct: 63 GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 405 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSV-------CWNTSGEYLASVSDELVRV 457
I++ + + I + ++ Q C L GH + V V + S +++ +D++V+
Sbjct: 122 IISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 458 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 516
W++ ++ + + + ++ P + G + LWN+ K + TLSA
Sbjct: 181 WNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 517 DKLVS--------SLAASTVNGM 531
D++ S LAA+T G+
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGI 260
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 82/201 (40%), Gaps = 9/201 (4%)
Query: 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 325
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 326 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSINN 380
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 381 GSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 439
F S + P I +A + I + ++ + L +++V S+
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLA 244
Query: 440 WNTSGEYLASVSDELVRVWSI 460
++ + +LA+ + ++V+S+
Sbjct: 245 FSPNRYWLAAATATGIKVFSL 265
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 15/139 (10%)
Query: 249 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 305
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 357
+ + + FSP+ LA ++A ++V+ + +P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVF-SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 358 PSKEDLLCSCDNNSEIRYW 376
+ L +N IR W
Sbjct: 296 ADGQTLFAGYTDNV-IRVW 313
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 7/131 (5%)
Query: 420 ETQVCRLKLQGHKNQVHSVCWNTSGE---YLASVSDELVRVWSI-GSGSK-GECIHELSC 474
E V R L+GH V S+ ++G+ L++ D+ + W + G K G +
Sbjct: 5 EVLVLRGTLEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG 63
Query: 475 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVA 533
+ C L +TL LW++ +T H V S+ M+
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 534 SASHDKCVKIW 544
S S DK +K+W
Sbjct: 124 SGSRDKTIKVW 134
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 108/267 (40%), Gaps = 63/267 (23%)
Query: 293 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 345
E ++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 346 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 405
GHS V +D + D G+ A
Sbjct: 63 GHSHIV---------QDCTLTAD------------GAYA--------------------- 80
Query: 406 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 464
L+A+ + + + DV T + GHK+ V SV + + S S D+ ++VW+I
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI---- 136
Query: 465 KGECIHELSCTGNKFHSCVFHPTFPS------LLVIGCYETLELWNMTENKT-LTLSAHD 517
KG+C+ L + P + ++ G + ++ WN+ + + H+
Sbjct: 137 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHN 196
Query: 518 KLVSSLAASTVNGMVASASHDKCVKIW 544
+++L AS ++ASA D + +W
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIXLW 223
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 82/201 (40%), Gaps = 9/201 (4%)
Query: 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 325
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSR 127
Query: 326 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSINN 380
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQ 185
Query: 381 GSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 439
F S + P I +A + I + ++ + L +++V S+
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA-QDEVFSLA 244
Query: 440 WNTSGEYLASVSDELVRVWSI 460
++ + +LA+ + ++V+S+
Sbjct: 245 FSPNRYWLAAATATGIKVFSL 265
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 15/141 (10%)
Query: 249 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 305
K + +FQ+ S + + SPDG L+A+ G D + LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQD 238
Query: 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 357
+ + + FSP+ LA ++A ++V+ + +P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVF-SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 358 PSKEDLLCSCDNNSEIRYWSI 378
+ L +N IR W +
Sbjct: 296 ADGQTLFAGYTDNV-IRVWQV 315
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 272 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 331
S G ++ +G +D ++W L HT I + R ++S D T+R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRI 336
Query: 332 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
WD EN + T GH+ V L + L S + IR W N+ S
Sbjct: 337 WDLENGELXY-TLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDANDYS 383
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 119/289 (41%), Gaps = 50/289 (17%)
Query: 290 WCTESFT-VKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 347
W F ++TL H T IT ++F + + T + D+ +RV+D+ N + L+ +GH
Sbjct: 105 WYNPKFVPQRTTLRGHXTSVITCLQFEDNY--VITGADDKXIRVYDSINKKFLLQ-LSGH 161
Query: 348 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ---MRFQPRLGR 404
V +L + + +L S + +R W I G C VF+ + + + +
Sbjct: 162 DGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY 219
Query: 405 ILAAAIENYISILDV-----------------------ETQVCRLKLQGHKNQVHSVCWN 441
I+ + +N + + + E L+GH V +V +
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGH 279
Query: 442 ----TSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 497
SG Y D + VW + ++ +C++ LS ++ +S ++ +
Sbjct: 280 GNIVVSGSY-----DNTLIVWDV---AQXKCLYILSGHTDRIYSTIYDHERKRCISASXD 331
Query: 498 ETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
T+ +W++ EN L TL H LV L S + + SA+ D ++ W
Sbjct: 332 TTIRIWDL-ENGELXYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGW 377
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 258 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317
++ T ++ S + + K + D +W E+ + TL+ HT + +R S
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKF 364
Query: 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 377
L +++AD ++R WD DYS R F+ H T + ++ +++L S N + ++
Sbjct: 365 --LVSAAADGSIRGWDAN--DYS-RKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYN 418
Query: 378 INNGSC--AGVFKCQSGATQMRFQPRLGRILAAAIE----NYISILD 418
+ +G A + K + F+ G+ L AA+E +++ ILD
Sbjct: 419 LRSGKLVHANILKDADQIWSVNFK---GKTLVAAVEKDGQSFLEILD 462
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 50/262 (19%), Positives = 95/262 (36%), Gaps = 38/262 (14%)
Query: 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRTVRVW 332
G +L +G D+ +W + E H + D+ ++ + T S D T+ VW
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 333 D-----------------------TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 369
ENP Y + GH +V ++ H +++ S
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENP-YFVGVLRGHXASVRTVSGHG---NIVVSGSY 288
Query: 370 NSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIENYISILDVETQVCRLKL 428
++ + W + C + + + R ++A+ + I I D+E L
Sbjct: 289 DNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTL 348
Query: 429 QGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 487
QGH V + S ++L S +D +R W S+ H + + F+ +
Sbjct: 349 QGHTALVGLL--RLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSA----ITTFYVS 402
Query: 488 FPSLLVIGCYETLELWNMTENK 509
++LV G ++N+ K
Sbjct: 403 -DNILVSGSENQFNIYNLRSGK 423
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 117/295 (39%), Gaps = 20/295 (6%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSP 315
T V S ++PDG L A+ G D VL+ T E+ H+ + + +SP
Sbjct: 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249
Query: 316 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 375
+++A++SAD+T+++W+ G L +K+ L+ S N I +
Sbjct: 250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV-SISANGFINF 308
Query: 376 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVC-RLKLQGHKN 433
+ GS V + A G+ L +A E +I+ D+ T + R+ H
Sbjct: 309 VNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT 368
Query: 434 QVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS--- 490
+ + + G+ D+ ++V G G + NK S +
Sbjct: 369 MITGIKTTSKGDLFTVSWDDHLKVVPAG----GSGVDSSKAVANKLSSQPLGLAVSADGD 424
Query: 491 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545
+ V CY+ + +++ + + +S + S +A S VA D V ++K
Sbjct: 425 IAVAACYKHIAIYSHGKLTEVPISYNS---SCVALSNDKQFVAVGGQDSKVHVYK 476
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 96/231 (41%), Gaps = 24/231 (10%)
Query: 266 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 324
+ S F P + +G D ++ F KST EHT+++ VR++P S A++
Sbjct: 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 209
Query: 325 ADRTVRVWDTEN-------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 377
D T+ +++ + D SL+ HS +V L + P + S + I+ W+
Sbjct: 210 GDGTIVLYNGVDGTKTGVFEDDSLKN-VAHSGSVFGLTWSPDGTK-IASASADKTIKIWN 267
Query: 378 INNGSCAGVFKCQSGATQMRFQPRLGRI------LAAAIENYISILDVETQVCRLKLQGH 431
+ + V K T++ Q +LG I ++ + +I+ ++ E GH
Sbjct: 268 V---ATLKVEKTIPVGTRIEDQ-QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH 323
Query: 432 KNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGEC---IHELSCTGNK 478
+ ++ + G+ L S E + W I +G +H TG K
Sbjct: 324 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 374
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 95/258 (36%), Gaps = 46/258 (17%)
Query: 294 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT----FTGHST 349
S T EH+ T + SPS A+ VR+WDT + L+T F+G
Sbjct: 48 SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG--- 104
Query: 350 TVMSLDFHPSKEDLLCSCDNNSEIRY-WSINNGSCAGVFKCQSGA-TQMRFQP-RLGRIL 406
V + + + + + + + + G+ G Q+ A + F+P R RI+
Sbjct: 105 PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRII 164
Query: 407 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG 466
+ + +N ++I + + H VHSV +N G AS +G G
Sbjct: 165 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS------------TGGDG 212
Query: 467 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 526
+ G K G +E L N+ AH V L S
Sbjct: 213 TIVLYNGVDGTK---------------TGVFEDDSLKNV---------AHSGSVFGLTWS 248
Query: 527 TVNGMVASASHDKCVKIW 544
+ASAS DK +KIW
Sbjct: 249 PDGTKIASASADKTIKIW 266
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 264 SKVESCHFSPDGKLLATGGHDKKAVLW-CTESFTVKST--LEEHTQWITDVRFSPSLSRL 320
+++ S FS +G L +K + + +F + T HT + V +SP RL
Sbjct: 492 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 551
Query: 321 ATSSADRTVRVWDTENP-DYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 378
AT S D +V VW+ P D+ + H+ ++V S+ + E + S +S I++W++
Sbjct: 552 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW--LNETTIVSAGQDSNIKFWNV 609
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/307 (19%), Positives = 123/307 (40%), Gaps = 26/307 (8%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
+ KV S ++P+ + + D + ++W + ++ H W+ + F+P+ +A
Sbjct: 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVAC 125
Query: 323 SSADRTVRVWD---TENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 376
D +++ + D ++ R TGH S + P +E L + + W
Sbjct: 126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLW 185
Query: 377 SINNGSCAGVFKCQ--SGATQMRFQPRLGRI-----LAAAIENYISILDVE-TQVCRLKL 428
+ G +F + SG T + + ++ + + + + D+ T
Sbjct: 186 DVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY 245
Query: 429 QGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 487
GH+ ++SV + G+ + SD+ R++ + +G + + + + V
Sbjct: 246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVA 305
Query: 488 FP---SLLVIG-----CY--ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 537
F LL G CY +TL L M N ++H+ +S L S+ + + S
Sbjct: 306 FSISGRLLFAGYSNGDCYVWDTL-LAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW 364
Query: 538 DKCVKIW 544
DK +KIW
Sbjct: 365 DKNLKIW 371
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 109/261 (41%), Gaps = 31/261 (11%)
Query: 295 FTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFTGH 347
++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F GH
Sbjct: 1 LVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 58
Query: 348 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRIL 406
S V L S + +R W + G F +S + + I+
Sbjct: 59 SHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 117
Query: 407 AAAIENYISILDVETQVCRLKLQGHKNQVHSV-------CWNTSGEYLASVSDELVRVWS 459
+ + + I + ++ Q C L GH + V V + S +++ +D++V+ W+
Sbjct: 118 SGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 176
Query: 460 IGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK 518
+ ++ + + + ++ P + G + LWN+ K + TLSA D+
Sbjct: 177 L---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 233
Query: 519 LVS--------SLAASTVNGM 531
+ S LAA+T G+
Sbjct: 234 VFSLAFSPNRYWLAAATATGI 254
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/250 (19%), Positives = 82/250 (32%), Gaps = 57/250 (22%)
Query: 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 325
V+ C + DG + DK LW + H + V S + + S
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 121
Query: 326 DRTVRVWDT-----------------------ENPD-----------------YSLRT-- 343
D+T++VW E D ++L
Sbjct: 122 DKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 181
Query: 344 ----FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ 399
F GH++ + +L P L+ S + EI W++ Q + F
Sbjct: 182 IEADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 240
Query: 400 PRLGRILAAAIENYISILDVETQV----CRLKLQGHKNQVH----SVCWNTSGEYL-ASV 450
P LAAA I + ++ Q R + G+ S+ W+ G+ L A
Sbjct: 241 PNR-YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 299
Query: 451 SDELVRVWSI 460
+D ++RVW +
Sbjct: 300 TDNVIRVWQV 309
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
Query: 249 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 305
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 173 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 232
Query: 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 357
+ + + FSP+ LA ++A ++V+ + +P Y LR F G+S +SL +
Sbjct: 233 E-VFSLAFSPNRYWLAAATA-TGIKVF-SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 289
Query: 358 PSKEDLLCSCDNNSEIRYWSI 378
+ L +N IR W +
Sbjct: 290 ADGQTLFAGYTDNV-IRVWQV 309
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 7/128 (5%)
Query: 423 VCRLKLQGHKNQVHSVCWNTSGE---YLASVSDELVRVWSI-GSGSK-GECIHELSCTGN 477
V R L+GH V S+ ++G+ L++ D+ + W + G K G + +
Sbjct: 2 VLRGTLEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 60
Query: 478 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASAS 536
C L +TL LW++ +T H V S+ M+ S S
Sbjct: 61 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 120
Query: 537 HDKCVKIW 544
DK +K+W
Sbjct: 121 RDKTIKVW 128
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 70/176 (39%), Gaps = 18/176 (10%)
Query: 347 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL 406
H +V ++ ++P + S + ++ W N A VF + P +
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 407 AAAIENY---ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV--SDELVRVWSI- 460
A+ + + D+++ C LQGH+ ++ +V W+ +Y+ + +D V++W +
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 461 -----------GSGSKGECIHELSCTGN-KFHSCVFHPTFPSLLVIGCYETLELWN 504
+G K + + + N K + F LL +G + LWN
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 102/227 (44%), Gaps = 41/227 (18%)
Query: 274 DGKLLATGGHDKKAVLWCTES------FTVKSTL-------EEHTQWITDVRFSPSLSRL 320
+G+ + +GG D VL+ E+ +T K+ + H + V++ P + +
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 321 ATSSA-DRTVRVWDTENPDYSLRT--FTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRY 375
TSS+ D+T++VWDT +L+T TV S P +K L+ +++
Sbjct: 115 FTSSSFDKTLKVWDTN----TLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170
Query: 376 WSINNGSCAGVFKCQSGAT-QMRFQPRLGRILA-AAIENYISILDV-------------- 419
+ +GSC+ + + + + PR ILA A+ ++ + + DV
Sbjct: 171 CDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230
Query: 420 --ETQVCRLKLQGHKNQVHSVCWNTSGEYLASV-SDELVRVWSIGSG 463
++Q H +V+ +C+ + G +L +V +D +R+W+ +G
Sbjct: 231 GKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 18/134 (13%)
Query: 266 VESCHFSPDGK---LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LA 321
V S H SP L+A G K L +S + L+ H Q I V +SP LA
Sbjct: 144 VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILA 203
Query: 322 TSSADRTVRVWDTENPDYSLRTFTGH----STTVMSLD-FHPSKEDLLC---------SC 367
T+SAD V++WD L T H S V S + H K + LC +
Sbjct: 204 TASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263
Query: 368 DNNSEIRYWSINNG 381
++ +R W+ +NG
Sbjct: 264 GTDNRMRLWNSSNG 277
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 260 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 315
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 316 SL---SRLATSSADRTVRVWDTEN 336
++ S A+ S DRT +W +N
Sbjct: 215 TVLLRSYXASVSQDRTCIIWTQDN 238
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 81/215 (37%), Gaps = 30/215 (13%)
Query: 275 GKLLATGGHDKKAVLWCTESFTVK--STLEEHTQ--WITDVRFSPSLSRLATSSADRTVR 330
GK AT DK ++ E T K TL H W D + LA+ S D V
Sbjct: 21 GKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVX 80
Query: 331 VWDTENPDYS-LRTFTGHSTTVMSLDFHPSKED---LLCSCDNNSEIRYWSINNGSCAGV 386
+W EN +S + HS +V S+ + P + L+ S D + + N + +
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPII 140
Query: 387 FKCQS-GATQMRFQPRL-------------GRILAAAIENYISIL----DVETQVCRLKL 428
+ G + P + + +N + I D +T V L
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 429 QGHKNQVHSVCWNTS---GEYLASVS-DELVRVWS 459
+GH + V V W+ + Y ASVS D +W+
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWT 235
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 6/156 (3%)
Query: 303 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 362
EH ++ V S ++ + S D ++VWD L ++ H+ V + P K+
Sbjct: 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-QVVLSSYRAHAAQVTCVAASPHKDS 183
Query: 363 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGA---TQMRFQPRLGRILAAAIEN-YISILD 418
+ SC ++ I W A C + T + + P+ + EN +S++D
Sbjct: 184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVD 243
Query: 419 VETQVCRLKLQGHKNQVHSVCWNT-SGEYLASVSDE 453
++ C L H V + ++ S +LAS+S++
Sbjct: 244 TKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED 279
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 500 LELWNMTENKTLTLSA-----HDKLVSSLAASTVNGMVASASHDKCVKIW 544
+ELW + EN+TL +S HD +VS+++ + S S D C+K+W
Sbjct: 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW 154
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 22/168 (13%)
Query: 301 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 360
L H + +T V+++ L + S D + VW + N + L T GH+ T+ S+D
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-RLGTLDGHTGTIWSIDVDCFT 86
Query: 361 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY------I 414
+ + + S I+ W ++NG C +K ++ F P G A ++N I
Sbjct: 87 KYCVTGSADYS-IKLWDVSNGQCVATWKSPVPVKRVEFSP-CGNYFLAILDNVMKNPGSI 144
Query: 415 SILDVETQVCRLKLQG------HKNQVHS-------VCWNTSGEYLAS 449
+I ++E +L HK H W+T G+Y+ +
Sbjct: 145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIA 192
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 271 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 330
++ +G LL + D A +W + + TL+ HT I + T SAD +++
Sbjct: 40 YNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99
Query: 331 VWDTEN 336
+WD N
Sbjct: 100 LWDVSN 105
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 271 FSPDGKLLATGGHDKKAVLW-CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 326
+S GK + G D K + + ++ +++ H + I+D++FSP L+ TSS D
Sbjct: 183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 51/274 (18%), Positives = 115/274 (41%), Gaps = 20/274 (7%)
Query: 284 DKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 342
++ +W +S +V + E + + ++ V++S S L+ + V ++D E+ LR
Sbjct: 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES-QTKLR 170
Query: 343 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS--INNGSCAGVFKCQSGATQMRFQP 400
T GH V L ++ +L S + I + I N + S + ++
Sbjct: 171 TMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS 227
Query: 401 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVR 456
++ + +N + I D + + + H V +V W L + D+ +
Sbjct: 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIH 287
Query: 457 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--ETLELWNMTEN---KTL 511
W+ +G++ + G++ S ++ P ++ + L +W+ + + K +
Sbjct: 288 FWNAATGARVNTVD----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQV 343
Query: 512 TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545
+ AHD V A S ++++A+ D+ +K W+
Sbjct: 344 DIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 259 IPASTSKVESCHFSPDGKLLATGGHDKKAVLW 290
IPA ++V SPDG++L+T D+ W
Sbjct: 345 IPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 14/156 (8%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
+S+V + DG LA+GG+D +W S K T H + V + P S L
Sbjct: 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLA 276
Query: 323 S---SADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCS---CDNNSEIRY 375
+ + D+ + W N R T + + V SL + P ++++ + DNN I
Sbjct: 277 TGGGTMDKQIHFW---NAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSI-- 331
Query: 376 WSINNGSCAGVFKCQSGATQMRFQPRL--GRILAAA 409
WS ++ + T++ + GRIL+ A
Sbjct: 332 WSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTA 367
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 79/203 (38%), Gaps = 8/203 (3%)
Query: 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATS 323
+ SC PDG L GG +W + T +K+ L + SP +
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 324 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383
+D + VWD N +R F GH+ +D L +N+ +R W + G
Sbjct: 160 CSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISNDGTKLWTGGLDNT-VRSWDLREGRQ 217
Query: 384 AGVFKCQSGATQMRFQPRLGRILAAAIENY-ISILDVETQVCRLKLQGHKNQVHSVCWNT 442
S + + P G LA +E+ + +L V + +L H++ V S+ +
Sbjct: 218 LQQHDFTSQIFSLGYCPT-GEWLAVGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAY 275
Query: 443 SGEYLASV-SDELVRVWSIGSGS 464
G++ S D L+ W G+
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGA 298
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 263 TSKVESCH---FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 319
TS +C+ SPD K+ + D +W + T+ + HT + + S ++
Sbjct: 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197
Query: 320 LATSSADRTVRVWDT-ENPDYSLRTFTGHSTTVMSLDFHPSKEDL 363
L T D TVR WD E FT + + SL + P+ E L
Sbjct: 198 LWTGGLDNTVRSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWL 239
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 455 VRVWSIGSGSKGECIHELSCTG--NKFHSCVFHPTFPSLLVIGCYETLELWNM---TENK 509
V+VW I + +L C N SC P +L+V G TL +W++ T
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133
Query: 510 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
L++ +LA S + + S D + +W
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 250 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQW 307
G + + + +V ++PD + T G D+ A +W + T K TL +
Sbjct: 39 GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA 98
Query: 308 ITDVRFSPSLSRLATSSADRTVRV--WDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLL 364
VR++P+ + A S R + + ++ EN + + +TV+SLD+HP+ L
Sbjct: 99 ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158
Query: 365 C-SCDNNSEI 373
SCD I
Sbjct: 159 AGSCDFKCRI 168
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 250 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQW 307
G + + + +V ++PD + T G D+ A +W + T K TL +
Sbjct: 39 GNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA 98
Query: 308 ITDVRFSPSLSRLATSSADRTVRV--WDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLL 364
VR++P+ + A S R + + ++ EN + + +TV+SLD+HP+ L
Sbjct: 99 ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158
Query: 365 C-SCDNNSEI 373
SCD I
Sbjct: 159 AGSCDFKCRI 168
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 304 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 361
H I D + +RLAT S+DR+V+++D N L GH V + + HP
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 362 DLLCSCDNNSEIRYWSINNGS 382
++L SC + ++ W NG+
Sbjct: 72 NILASCSYDRKVIIWREENGT 92
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 276 KLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSL----SRLATSSADRT 328
K A+GG D LW E + + LE H+ W+ DV ++PS+ S +A+ S D
Sbjct: 180 KRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239
Query: 329 VRVW 332
V +W
Sbjct: 240 VFIW 243
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 294 SFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVW---DTENPDYSLRTFTGHST 349
+F ++ +++ H IT ++F PS L +SS D +++W D NP RT GH
Sbjct: 124 NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP----RTLIGHRA 179
Query: 350 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 387
TV + ++L S + IR W G+ F
Sbjct: 180 TVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTTIHTF 216
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 320
A S++ F P G+ L + D + +W + + TL H +TD+ +
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 321 ATSSADRTVRVWD 333
++S D T+R+W+
Sbjct: 194 LSASLDGTIRLWE 206
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 401 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL-VRVWS 459
++ R + E I +LD + R Q H +++ + + SGE L S S ++ +++WS
Sbjct: 105 QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWS 164
Query: 460 IGSGS 464
+ GS
Sbjct: 165 VKDGS 169
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 294 SFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVW---DTENPDYSLRTFTGHST 349
+F ++ +++ H IT ++F PS L +SS D +++W D NP RT GH
Sbjct: 127 NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP----RTLIGHRA 182
Query: 350 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 387
TV + ++L S + IR W G+ F
Sbjct: 183 TVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTTIHTF 219
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 320
A S++ F P G+ L + D + +W + + TL H +TD+ +
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 321 ATSSADRTVRVWD 333
++S D T+R+W+
Sbjct: 197 LSASLDGTIRLWE 209
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 395 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL 454
QMR R + E I +LD + R Q H +++ + + SGE L S S ++
Sbjct: 108 QMR------RFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDM 161
Query: 455 -VRVWSIGSGS 464
+++WS+ GS
Sbjct: 162 QLKIWSVKDGS 172
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 65/172 (37%), Gaps = 5/172 (2%)
Query: 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW 332
DG +GG D +W V + H+ + V P + S D + +W
Sbjct: 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
Query: 333 DTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 391
DT P + R F T S+ +HP K+D D + +I N A S
Sbjct: 210 DTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHS 269
Query: 392 -GATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWN 441
T + + LA+ E+ +++LD + L H++ V V W+
Sbjct: 270 QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS-HRDFVTGVAWS 320
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Query: 306 QWITDVRFSPSLS-RLATSSA---DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSK 360
Q ++ V + P S R+AT++ D ++ +WD N + L+T GH ++SLD+
Sbjct: 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD 274
Query: 361 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILA-AAIENYISILD 418
E LL S ++ + W+ + F + + +F P + A A+ +N I +
Sbjct: 275 EHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQT 334
Query: 419 VETQVCRLKLQ 429
++ L Q
Sbjct: 335 LQNLTNTLDEQ 345
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 340 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379
S+ F+ HS++V ++ F+ ++++L S NN EI W +N
Sbjct: 105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 269 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADR 327
CH D LL + G D +LW ES S W +F+P L A +S D
Sbjct: 271 CH--QDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN 328
Query: 328 TVRV 331
+ V
Sbjct: 329 KIEV 332
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 304 HTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLR--------TFTGHSTTVMSL 354
HT + D+ + P + + +A+ S D TV VW E PD L T GH+ V +
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVW--EIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCA 384
+HP+ +++L S ++ I W + G+
Sbjct: 138 AWHPTAQNVLLSAGXDNVILVWDVGTGAAV 167
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 14/133 (10%)
Query: 338 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR 397
D ++ GH+ V+ + + P ++++ S + + W I +G + + T
Sbjct: 71 DKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR-EPVITLEG 129
Query: 398 FQPRLGRI----------LAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGE 445
R+G + L+A +N I + DV T L L H + ++SV W+ G
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Query: 446 YL-ASVSDELVRV 457
+ S D+ VRV
Sbjct: 190 LICTSCRDKRVRV 202
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 320 LATSSADRTVRVWD---TENPDYSLRTFTGHST----TVMSLDFHPSKEDLLCSCDNNSE 372
+ T S D TV+VWD ++P ++ G + TV + + +E ++C+ +N +
Sbjct: 132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD 191
Query: 373 IRYWSINNGSCAGVFKCQSGATQMRFQPR---LGRILAAAIENYISILDVETQ 422
I+ + + N + ++G + F + + +++A ++E + D+ TQ
Sbjct: 192 IKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ 244
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 304 HTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLR--------TFTGHSTTVMSL 354
HT + D+ + P + + +A+ S D TV VW E PD L T GH+ V +
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVW--EIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 355 DFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+HP+ +++L S ++ I W + G+
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGTGA 165
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 14/133 (10%)
Query: 338 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR 397
D ++ GH+ V+ + + P ++++ S + + W I +G + + T
Sbjct: 71 DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR-EPVITLEG 129
Query: 398 FQPRLGRI----------LAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGE 445
R+G + L+A +N I + DV T L L H + ++SV W+ G
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Query: 446 YLA-SVSDELVRV 457
+ S D+ VRV
Sbjct: 190 LICTSCRDKRVRV 202
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 301 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD---- 355
L H + +T V +P LAT+S D+TV++WD LR G ++ + SL
Sbjct: 247 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD-------LRQVRGKASFLYSLPHRHP 299
Query: 356 -----FHPSKEDLLCSCDNNSEIRYWSINNGSC 383
F P LL + D SEIR +S + C
Sbjct: 300 VNAACFSPDGARLL-TTDQKSEIRVYSASQWDC 331
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 301 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD---- 355
L H + +T V +P LAT+S D+TV++WD LR G ++ + SL
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD-------LRQVRGKASFLYSLPHRHP 298
Query: 356 -----FHPSKEDLLCSCDNNSEIRYWSINNGSC 383
F P LL + D SEIR +S + C
Sbjct: 299 VNAACFSPDGARLL-TTDQKSEIRVYSASQWDC 330
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 301 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD---- 355
L H + +T V +P LAT+S D+TV++WD LR G ++ + SL
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD-------LRQVRGKASFLYSLPHRHP 298
Query: 356 -----FHPSKEDLLCSCDNNSEIRYWSINNGSC 383
F P LL + D SEIR +S + C
Sbjct: 299 VNAACFSPDGARLL-TTDQKSEIRVYSASQWDC 330
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 82/202 (40%), Gaps = 48/202 (23%)
Query: 269 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF-SPSLSRLATSSADR 327
C S ++ +G DK A +W S L+ H + D + S S ++ T+SAD+
Sbjct: 108 CSLSFQDGVVISGSWDKTAKVWKEGSLVY--NLQAHNASVWDAKVVSFSENKFLTASADK 165
Query: 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 387
T+++W D ++TF+G +N +R+ ++ +
Sbjct: 166 TIKLWQN---DKVIKTFSGI---------------------HNDVVRHLAVVDD------ 195
Query: 388 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 447
G ++ + + I ++D T +GH++ V+ + +G+ +
Sbjct: 196 ---------------GHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIV 240
Query: 448 ASVSDELVRVWSIGSGSKGECI 469
+ D VR+WS +GS + I
Sbjct: 241 SCGEDRTVRIWSKENGSLKQVI 262
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
Query: 447 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET----LE 501
+ASVS D VR+WS G ++ TG F + V + + LL+ G +T +
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVY----TGQGFLNSVCYDSEKELLLFGGKDTXINGVP 87
Query: 502 LWNMT-ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545
L+ + E+ TL H V SL S +G+V S S DK K+WK
Sbjct: 88 LFATSGEDPLYTLIGHQGNVCSL--SFQDGVVISGSWDKTAKVWK 130
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 387
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 144 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 190
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 72/195 (36%), Gaps = 40/195 (20%)
Query: 383 CAGVFKCQSGATQMRFQPRLG------------RILAAAIENYISILDVETQVCRLKLQG 430
C FKC + + QP G + A N +++ + +Q LQ
Sbjct: 39 CKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 98
Query: 431 HKN-----QVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG----------ECIHELSCT 475
+ + ++ W Y ++ S L+ V +GS+G +CI
Sbjct: 99 YVDADADENFYTCAWT----YDSNTSHPLLAV----AGSRGIIRIINPITMQCIKHYVGH 150
Query: 476 GNKFHSCVFHPTFPSLLV-IGCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNG 530
GN + FHP P+LL+ + L LWN+ + + + H V S +
Sbjct: 151 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE 210
Query: 531 MVASASHDKCVKIWK 545
+ S D +K+W+
Sbjct: 211 KIMSCGMDHSLKLWR 225
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 387
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 103 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 149
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 467 ECIHELSCTGNKFHSCVFHPTFPSLLV-IGCYETLELWNMTENKTLTL----SAHDKLVS 521
+CI GN + FHP P+LL+ + L LWN+ + + + H V
Sbjct: 101 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 160
Query: 522 SLAASTVNGMVASASHDKCVKIWK 545
S + + S D +K+W+
Sbjct: 161 SADYDLLGEKIMSCGMDHSLKLWR 184
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 304 HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSK 360
H +T F+P L ATSS D TV++WD N S H V + F+P+
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 361 EDLLCSCDNNSEIRYWS 377
L + D +EIR +S
Sbjct: 263 STKLLTTDQRNEIRVYS 279
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 387
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 154
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 71/190 (37%), Gaps = 30/190 (15%)
Query: 383 CAGVFKCQSGATQMRFQPRLG------------RILAAAIENYISILDVETQVCRLKLQG 430
C FKC + + QP G + A N +++ + +Q LQ
Sbjct: 3 CKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 62
Query: 431 HKN-----QVHSVCW----NTSGEYLASV-SDELVRVWSIGSGSKGECIHELSCTGNKFH 480
+ + ++ W NTS LA S ++R I + +CI GN +
Sbjct: 63 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR---IINPITMQCIKHYVGHGNAIN 119
Query: 481 SCVFHPTFPSLLV-IGCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASA 535
FHP P+LL+ + L LWN+ + + + H V S + + S
Sbjct: 120 ELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSC 179
Query: 536 SHDKCVKIWK 545
D +K+W+
Sbjct: 180 GMDHSLKLWR 189
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 387
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 153
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 71/190 (37%), Gaps = 30/190 (15%)
Query: 383 CAGVFKCQSGATQMRFQPRLG------------RILAAAIENYISILDVETQVCRLKLQG 430
C FKC + + QP G + A N +++ + +Q LQ
Sbjct: 2 CKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 61
Query: 431 HKN-----QVHSVCW----NTSGEYLASV-SDELVRVWSIGSGSKGECIHELSCTGNKFH 480
+ + ++ W NTS LA S ++R I + +CI GN +
Sbjct: 62 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR---IINPITMQCIKHYVGHGNAIN 118
Query: 481 SCVFHPTFPSLLV-IGCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASA 535
FHP P+LL+ + L LWN+ + + + H V S + + S
Sbjct: 119 ELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSC 178
Query: 536 SHDKCVKIWK 545
D +K+W+
Sbjct: 179 GMDHSLKLWR 188
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 387
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 153
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 71/190 (37%), Gaps = 30/190 (15%)
Query: 383 CAGVFKCQSGATQMRFQPRLG------------RILAAAIENYISILDVETQVCRLKLQG 430
C FKC + + QP G + A N +++ + +Q LQ
Sbjct: 2 CKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 61
Query: 431 HKN-----QVHSVCW----NTSGEYLASV-SDELVRVWSIGSGSKGECIHELSCTGNKFH 480
+ + ++ W NTS LA S ++R I + +CI GN +
Sbjct: 62 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR---IINPITMQCIKHYVGHGNAIN 118
Query: 481 SCVFHPTFPSLLV-IGCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASA 535
FHP P+LL+ + L LWN+ + + + H V S + + S
Sbjct: 119 ELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSC 178
Query: 536 SHDKCVKIWK 545
D +K+W+
Sbjct: 179 GMDHSLKLWR 188
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 304 HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSK 360
H +T F+P L ATSS D TV++WD N S H V + F+P+
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 361 EDLLCSCDNNSEIRYWS 377
L + D +EIR +S
Sbjct: 262 STKLLTTDQRNEIRVYS 278
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 24/57 (42%)
Query: 320 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 376
+AT D + +WD + H + + FHPS + L +C + + +W
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHW 308
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 264 SKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SR 319
S V FSPD G+ + T G D+K + +S +E+ + + F+ S +
Sbjct: 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 266
Query: 320 LATSSADRTVRVWDT 334
AT AD T+RVWD
Sbjct: 267 FATVGADATIRVWDV 281
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 62/316 (19%), Positives = 123/316 (38%), Gaps = 39/316 (12%)
Query: 257 QLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWC--------TESFTVKSTLEEHTQ 306
Q +S V + FSP + L +G K ++W + VKS +
Sbjct: 58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG 117
Query: 307 WITDVRFSPSLSRLATSSADR----TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 362
I+D+ + RL R WD+ N SL +GHS + + S+
Sbjct: 118 PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN---SLGEVSGHSQRINACHLKQSRPM 174
Query: 363 LLCSCDNNSEIRYWS----INNGSCAGVFKCQSGATQMRFQPRLGR-ILAAAIENYISIL 417
+ ++ + ++ + S K S + F P G ++ + IS
Sbjct: 175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF 234
Query: 418 DVETQVCRLKLQGHKNQVH----SVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS 473
D ++ ++ + V ++ W S ++ +D +RVW + + +C+ + +
Sbjct: 235 DGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV---TTSKCVQKWT 291
Query: 474 C----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTV 528
GN+ V ++ + TL + + ++ L T+S H+K +++L TV
Sbjct: 292 LDKQQLGNQ-QVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITAL---TV 347
Query: 529 NGMVASASHDKCVKIW 544
N ++ S S+D + W
Sbjct: 348 NPLI-SGSYDGRIMEW 362
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCH-----------FSPD-GKLLATGGHDK 285
+ R RS VG + +Q P S + H FSPD G+ + T G D+
Sbjct: 170 QSRPXRSXTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR 229
Query: 286 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATSSADRTVRVWDT 334
K + +S +E+ + + F+ S + AT AD T+RVWD
Sbjct: 230 KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV 281
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 62/316 (19%), Positives = 123/316 (38%), Gaps = 39/316 (12%)
Query: 257 QLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWC--------TESFTVKSTLEEHTQ 306
Q +S V + FSP + L +G K ++W + VKS +
Sbjct: 58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG 117
Query: 307 WITDVRFSPSLSRLATSSADR----TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 362
I+D+ + RL R WD+ N SL +GHS + + S+
Sbjct: 118 PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN---SLGEVSGHSQRINACHLKQSRPX 174
Query: 363 LLCSCDNNSEIRYWS----INNGSCAGVFKCQSGATQMRFQPRLGR-ILAAAIENYISIL 417
+ ++ + ++ + S K S + F P G ++ + IS
Sbjct: 175 RSXTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF 234
Query: 418 DVETQVCRLKLQGHKNQVH----SVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS 473
D ++ ++ + V ++ W S ++ +D +RVW + + +C+ + +
Sbjct: 235 DGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV---TTSKCVQKWT 291
Query: 474 C----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTV 528
GN+ V ++ + TL + + ++ L T+S H+K +++L TV
Sbjct: 292 LDKQQLGNQ-QVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITAL---TV 347
Query: 529 NGMVASASHDKCVKIW 544
N ++ S S+D + W
Sbjct: 348 NPLI-SGSYDGRIXEW 362
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 45/241 (18%), Positives = 100/241 (41%), Gaps = 27/241 (11%)
Query: 295 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 354
F + ++ + T +T + +S + + T + +R+W+ ++ F H ++S+
Sbjct: 98 FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNF--HRAPIVSV 155
Query: 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG---------- 403
++ ++ S D + W++ +G+ F+ ++G + + + G
Sbjct: 156 KWNKDGTHII-SMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEW 214
Query: 404 ----RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVW 458
+ + + I + + + KL GH + + +N + + L S SD+ +R+W
Sbjct: 215 VDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274
Query: 459 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSAH 516
G+G+ C + S S V VI C ++ LW++ +N L LS
Sbjct: 275 HGGNGNSQNCFYGHS------QSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIV 328
Query: 517 D 517
D
Sbjct: 329 D 329
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 15/131 (11%)
Query: 428 LQGHKNQVHSVCWNTSGEYLASVSDELVRV-WSIGSGSKGECIHELSCTGNKFHSCVFHP 486
L H+ + SV WN G ++ S+ E V + W++ SG+ + EL TG + H
Sbjct: 145 LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHF-ELKETGGSSINAENHS 203
Query: 487 TFPSL------------LVIGCYETLELWNMTEN-KTLTLSAHDKLVSSLAASTVNGMVA 533
SL ++ G + ++ +TE T L H +S L + N ++
Sbjct: 204 GDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL 263
Query: 534 SASHDKCVKIW 544
SAS D ++IW
Sbjct: 264 SASDDGTLRIW 274
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 16/86 (18%)
Query: 308 ITDVRFSPSLSRLAT---SSADRTVRVWDTEN---------PDYSLRTFTG---HSTTVM 352
I V+FSP S LA S++ + +++TE P +S + G HS+ VM
Sbjct: 246 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 305
Query: 353 SLDFHPSKEDLLCSCDNNSEIRYWSI 378
SL F+ S E LCS + ++R+W +
Sbjct: 306 SLSFNDSGE-TLCSAGWDGKLRFWDV 330
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 18/94 (19%)
Query: 262 STSKVESCHFSPDGKLLATGGHDKKAV----LWCTE-----------SFTVKSTLEE--H 304
+++ + S FSP G LLA HD + L+ TE + + +++L E H
Sbjct: 242 NSNSIRSVKFSPQGSLLAIA-HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 300
Query: 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 338
+ W+ + F+ S L ++ D +R WD + +
Sbjct: 301 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 334
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 16/86 (18%)
Query: 308 ITDVRFSPSLSRLAT---SSADRTVRVWDTEN---------PDYSLRTFTG---HSTTVM 352
I V+FSP S LA S++ + +++TE P +S + G HS+ VM
Sbjct: 236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 295
Query: 353 SLDFHPSKEDLLCSCDNNSEIRYWSI 378
SL F+ S E LCS + ++R+W +
Sbjct: 296 SLSFNDSGE-TLCSAGWDGKLRFWDV 320
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 18/94 (19%)
Query: 262 STSKVESCHFSPDGKLLATGGHDKKAV----LWCTE-----------SFTVKSTLEE--H 304
+++ + S FSP G LLA HD + L+ TE + + +++L E H
Sbjct: 232 NSNSIRSVKFSPQGSLLAIA-HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 290
Query: 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 338
+ W+ + F+ S L ++ D +R WD + +
Sbjct: 291 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 324
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 37/163 (22%)
Query: 314 SPSLSRL-ATSSADRTVRVWDTENPDYS---------LRTFTGHSTTVMSLDFHPSKEDL 363
SP R+ A++S D+TV++W+ E+PD L T ++ S+ F P+ L
Sbjct: 67 SPEYGRIIASASYDKTVKLWE-EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL 125
Query: 364 LCSCDNN------------SEIRYWSINNG----SCAGVFKCQS----GATQMRFQPRLG 403
+C N S++R W++ + S QS RF P
Sbjct: 126 KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE-- 183
Query: 404 RILAAAIENYISIL---DVETQVCRLKLQGHKNQVHSVCWNTS 443
++ +A+E I D + V KL GHK+ + S+ W S
Sbjct: 184 KLAVSALEQAIIYQRGKDGKLHVAA-KLPGHKSLIRSISWAPS 225
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 37/163 (22%)
Query: 314 SPSLSRL-ATSSADRTVRVWDTENPDYS---------LRTFTGHSTTVMSLDFHPSKEDL 363
SP R+ A++S D+TV++W+ E+PD L T ++ S+ F P+ L
Sbjct: 65 SPEYGRIIASASYDKTVKLWE-EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL 123
Query: 364 LCSCDNN------------SEIRYWSINNG----SCAGVFKCQS----GATQMRFQPRLG 403
+C N S++R W++ + S QS RF P
Sbjct: 124 KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE-- 181
Query: 404 RILAAAIENYISIL---DVETQVCRLKLQGHKNQVHSVCWNTS 443
++ +A+E I D + V KL GHK+ + S+ W S
Sbjct: 182 KLAVSALEQAIIYQRGKDGKLHVAA-KLPGHKSLIRSISWAPS 223
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 37/163 (22%)
Query: 314 SPSLSRL-ATSSADRTVRVWDTENPDYS---------LRTFTGHSTTVMSLDFHPSKEDL 363
SP R+ A++S D+TV++W+ E+PD L T ++ S+ F P+ L
Sbjct: 67 SPEYGRIIASASYDKTVKLWE-EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL 125
Query: 364 LCSCDNN------------SEIRYWSINNG----SCAGVFKCQS----GATQMRFQPRLG 403
+C N S++R W++ + S QS RF P
Sbjct: 126 KLACLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPSRFSPE-- 183
Query: 404 RILAAAIENYISIL---DVETQVCRLKLQGHKNQVHSVCWNTS 443
++ +A+E I D + V KL GHK+ + S+ W S
Sbjct: 184 KLAVSALEQAIIYQRGKDGKLHVA-AKLPGHKSLIRSISWAPS 225
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 491 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSL--AASTVNGMVASASHDKCVKIW 544
+ C +T ++W+++ N+ + ++ HD V ++ + V + S DK +K W
Sbjct: 101 VFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 257 QLIPAS----TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 312
Q IP + T V +S DG + T DK A +W S + +H + +
Sbjct: 76 QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS-NQAIQIAQHDAPVKTIH 134
Query: 313 F--SPSLSRLATSSADRTVRVWDTE 335
+ +P+ S + T S D+T++ WDT
Sbjct: 135 WIKAPNYSCVMTGSWDKTLKFWDTR 159
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 271 FSPD---GKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSA 325
FSP G L G W + T+ + HT + DV +S S++ T+S
Sbjct: 47 FSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106
Query: 326 DRTVRVWD 333
D+T ++WD
Sbjct: 107 DKTAKMWD 114
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 15/68 (22%)
Query: 309 TDVRFSPSLSRLATSSADRTVRV---------WDTENPDYSLRTFTGHSTTVMSLDFHPS 359
T VR+SP+ + A S R + V W +++ LR+ T++SLD+HP+
Sbjct: 104 TFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS------TILSLDWHPN 157
Query: 360 KEDLLCSC 367
L C
Sbjct: 158 NVLLAAGC 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,402,374
Number of Sequences: 62578
Number of extensions: 549276
Number of successful extensions: 2294
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1178
Number of HSP's gapped (non-prelim): 470
length of query: 545
length of database: 14,973,337
effective HSP length: 104
effective length of query: 441
effective length of database: 8,465,225
effective search space: 3733164225
effective search space used: 3733164225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)