Query 009059
Match_columns 545
No_of_seqs 966 out of 2512
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 19:54:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2.4E-48 5.2E-53 362.4 26.8 302 235-545 132-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 7.4E-47 1.6E-51 352.5 25.9 289 254-545 106-437 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 3.2E-45 7E-50 345.9 24.6 282 259-545 171-458 (459)
4 KOG0286 G-protein beta subunit 100.0 2.8E-42 6.1E-47 311.9 34.4 291 252-545 44-343 (343)
5 KOG0265 U5 snRNP-specific prot 100.0 3.8E-40 8.3E-45 299.2 28.6 288 255-543 39-334 (338)
6 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-40 3.5E-45 314.1 21.2 261 236-504 193-458 (459)
7 KOG0279 G protein beta subunit 100.0 2.2E-38 4.8E-43 285.1 32.5 284 254-545 6-311 (315)
8 KOG0315 G-protein beta subunit 100.0 2.7E-38 5.8E-43 280.0 29.7 268 276-545 11-286 (311)
9 KOG0295 WD40 repeat-containing 100.0 2.5E-39 5.5E-44 300.8 23.7 292 250-545 95-404 (406)
10 KOG0266 WD40 repeat-containing 100.0 5.4E-37 1.2E-41 319.1 40.6 286 256-545 151-452 (456)
11 KOG0285 Pleiotropic regulator 100.0 3.2E-38 7E-43 292.4 26.4 288 252-545 140-437 (460)
12 KOG0315 G-protein beta subunit 100.0 3E-37 6.6E-42 273.3 30.5 283 235-526 15-309 (311)
13 cd00200 WD40 WD40 domain, foun 100.0 4.5E-36 9.7E-41 292.3 38.1 284 257-545 3-289 (289)
14 KOG0284 Polyadenylation factor 100.0 9.9E-39 2.1E-43 300.7 17.2 277 263-545 96-378 (464)
15 KOG0279 G protein beta subunit 100.0 2.1E-36 4.5E-41 272.4 28.6 267 235-506 33-313 (315)
16 KOG0318 WD40 repeat stress pro 100.0 1.1E-35 2.3E-40 288.3 35.3 300 239-545 169-600 (603)
17 KOG0273 Beta-transducin family 100.0 1E-36 2.2E-41 291.9 27.5 282 256-545 172-480 (524)
18 KOG0318 WD40 repeat stress pro 100.0 2.7E-35 5.9E-40 285.5 36.2 304 235-545 122-558 (603)
19 KOG0273 Beta-transducin family 100.0 6.9E-36 1.5E-40 286.2 30.4 276 263-545 235-521 (524)
20 KOG0282 mRNA splicing factor [ 100.0 3.3E-37 7.1E-42 296.5 19.0 290 254-545 205-503 (503)
21 KOG0645 WD40 repeat protein [G 100.0 1E-34 2.2E-39 260.4 33.0 283 253-545 4-309 (312)
22 KOG0293 WD40 repeat-containing 100.0 4.3E-36 9.3E-41 283.0 22.6 289 251-545 212-511 (519)
23 KOG0291 WD40-repeat-containing 100.0 1.7E-34 3.6E-39 290.5 34.6 287 254-545 298-610 (893)
24 PLN00181 protein SPA1-RELATED; 100.0 7.3E-34 1.6E-38 316.9 41.5 303 240-545 458-791 (793)
25 KOG0296 Angio-associated migra 100.0 2.3E-34 5E-39 268.0 30.1 300 236-545 82-396 (399)
26 KOG0263 Transcription initiati 100.0 7E-35 1.5E-39 296.1 28.0 269 262-535 377-703 (707)
27 KOG0319 WD40-repeat-containing 100.0 2.5E-34 5.5E-39 289.0 29.1 288 254-545 314-617 (775)
28 KOG0286 G-protein beta subunit 100.0 1.6E-33 3.5E-38 255.2 30.5 262 235-504 72-343 (343)
29 KOG0319 WD40-repeat-containing 100.0 2.4E-34 5.3E-39 289.2 27.3 303 236-545 80-575 (775)
30 KOG0291 WD40-repeat-containing 100.0 4.7E-32 1E-36 272.9 38.3 280 261-545 263-548 (893)
31 KOG0263 Transcription initiati 100.0 5.4E-34 1.2E-38 289.7 24.3 243 299-545 372-647 (707)
32 KOG0316 Conserved WD40 repeat- 100.0 5.7E-33 1.2E-37 244.3 26.1 280 255-544 9-296 (307)
33 KOG0276 Vesicle coat complex C 100.0 2.5E-33 5.5E-38 276.5 25.7 282 257-543 7-295 (794)
34 KOG0306 WD40-repeat-containing 100.0 8.6E-33 1.9E-37 278.1 28.2 281 257-545 367-662 (888)
35 KOG0281 Beta-TrCP (transducin 100.0 4E-34 8.7E-39 264.2 15.6 268 259-545 193-475 (499)
36 KOG0643 Translation initiation 100.0 8.9E-32 1.9E-36 241.0 28.6 281 258-544 5-314 (327)
37 KOG0295 WD40 repeat-containing 100.0 8E-33 1.7E-37 257.5 22.5 262 236-505 126-405 (406)
38 KOG0296 Angio-associated migra 100.0 4.1E-32 9E-37 253.0 26.8 285 255-545 56-354 (399)
39 KOG0278 Serine/threonine kinas 100.0 4.2E-33 9.1E-38 247.1 18.8 280 258-545 9-295 (334)
40 KOG0275 Conserved WD40 repeat- 100.0 1.6E-33 3.4E-38 258.0 16.6 279 261-545 211-507 (508)
41 KOG1407 WD40 repeat protein [F 100.0 7.6E-32 1.6E-36 240.7 26.7 282 257-544 14-308 (313)
42 KOG0284 Polyadenylation factor 100.0 7.3E-34 1.6E-38 267.9 13.9 258 240-505 118-379 (464)
43 KOG0306 WD40-repeat-containing 100.0 1.1E-31 2.5E-36 270.0 30.0 301 238-544 85-577 (888)
44 KOG0292 Vesicle coat complex C 100.0 5.5E-32 1.2E-36 276.1 26.6 282 259-544 5-318 (1202)
45 KOG0276 Vesicle coat complex C 100.0 4.9E-31 1.1E-35 260.4 28.4 256 240-501 35-294 (794)
46 KOG0266 WD40 repeat-containing 100.0 4.3E-31 9.2E-36 274.9 29.3 265 236-506 177-454 (456)
47 KOG0288 WD40 repeat protein Ti 100.0 3.9E-32 8.4E-37 256.7 18.6 282 256-545 168-459 (459)
48 KOG0645 WD40 repeat protein [G 100.0 1.9E-30 4.1E-35 233.1 28.4 264 236-506 33-311 (312)
49 KOG0313 Microtubule binding pr 100.0 7.5E-31 1.6E-35 245.6 26.7 278 261-545 103-416 (423)
50 KOG0281 Beta-TrCP (transducin 100.0 7.9E-33 1.7E-37 255.7 13.1 261 235-511 212-482 (499)
51 KOG1446 Histone H3 (Lys4) meth 100.0 1.6E-29 3.5E-34 232.5 33.2 283 254-544 5-300 (311)
52 KOG0285 Pleiotropic regulator 100.0 9.8E-31 2.1E-35 242.8 24.4 291 207-507 144-440 (460)
53 KOG0277 Peroxisomal targeting 100.0 8.2E-31 1.8E-35 233.3 22.7 277 267-545 12-307 (311)
54 cd00200 WD40 WD40 domain, foun 100.0 2E-29 4.4E-34 245.2 35.0 258 239-504 30-289 (289)
55 KOG0265 U5 snRNP-specific prot 100.0 6.3E-30 1.4E-34 232.8 26.9 286 208-505 41-337 (338)
56 KOG0640 mRNA cleavage stimulat 100.0 1.6E-30 3.5E-35 237.2 22.5 286 255-545 104-424 (430)
57 KOG0283 WD40 repeat-containing 100.0 3.5E-30 7.7E-35 264.1 26.0 247 254-506 257-576 (712)
58 PTZ00420 coronin; Provisional 100.0 1.5E-28 3.2E-33 256.2 37.1 249 281-529 50-318 (568)
59 KOG0772 Uncharacterized conser 100.0 6E-30 1.3E-34 247.7 24.6 287 256-544 160-484 (641)
60 KOG0282 mRNA splicing factor [ 100.0 2.4E-31 5.1E-36 256.2 14.7 248 295-545 204-460 (503)
61 KOG0274 Cdc4 and related F-box 100.0 2.9E-29 6.3E-34 260.7 30.4 270 261-545 206-480 (537)
62 KOG0316 Conserved WD40 repeat- 100.0 1.2E-29 2.7E-34 223.3 23.1 258 235-503 34-296 (307)
63 KOG0289 mRNA splicing factor [ 100.0 2.8E-29 6.1E-34 238.6 26.7 277 263-544 219-503 (506)
64 KOG0268 Sof1-like rRNA process 100.0 7.8E-31 1.7E-35 244.0 15.8 279 256-545 59-343 (433)
65 KOG0278 Serine/threonine kinas 100.0 1.3E-30 2.7E-35 231.4 15.6 251 254-511 50-302 (334)
66 KOG0310 Conserved WD40 repeat- 100.0 3.2E-29 6.8E-34 242.0 26.4 276 263-543 26-305 (487)
67 KOG0647 mRNA export protein (c 100.0 5.7E-29 1.2E-33 226.8 26.4 274 260-538 24-315 (347)
68 KOG0305 Anaphase promoting com 100.0 5.2E-29 1.1E-33 249.6 28.7 267 269-545 183-459 (484)
69 PTZ00421 coronin; Provisional 100.0 5.5E-28 1.2E-32 250.8 35.7 264 264-529 21-315 (493)
70 KOG0292 Vesicle coat complex C 100.0 1.4E-28 3E-33 251.4 28.6 259 239-506 30-321 (1202)
71 KOG0283 WD40 repeat-containing 100.0 4.8E-29 1E-33 255.8 24.7 246 296-545 257-574 (712)
72 PLN00181 protein SPA1-RELATED; 100.0 1E-27 2.2E-32 267.6 37.6 266 236-505 501-792 (793)
73 KOG0973 Histone transcription 100.0 2.1E-28 4.6E-33 257.1 29.3 280 261-544 11-352 (942)
74 KOG0313 Microtubule binding pr 100.0 3.1E-28 6.8E-33 228.1 26.0 261 236-505 121-417 (423)
75 KOG0293 WD40 repeat-containing 100.0 7.5E-29 1.6E-33 234.2 21.5 267 235-507 241-514 (519)
76 KOG0294 WD40 repeat-containing 100.0 7.8E-28 1.7E-32 220.6 25.8 267 251-526 31-306 (362)
77 KOG0300 WD40 repeat-containing 100.0 2.8E-28 6E-33 223.2 22.2 289 252-545 137-474 (481)
78 KOG1407 WD40 repeat protein [F 100.0 2.4E-28 5.2E-33 218.4 21.3 241 299-543 14-257 (313)
79 KOG0308 Conserved WD40 repeat- 100.0 7.8E-29 1.7E-33 246.2 19.5 274 269-545 30-325 (735)
80 KOG0274 Cdc4 and related F-box 100.0 1.9E-27 4.2E-32 247.1 29.6 259 236-511 224-487 (537)
81 KOG0277 Peroxisomal targeting 100.0 4E-28 8.7E-33 216.2 20.8 253 249-505 47-308 (311)
82 KOG0288 WD40 repeat protein Ti 100.0 1.2E-28 2.5E-33 233.3 18.0 260 235-503 192-458 (459)
83 KOG0641 WD40 repeat protein [G 100.0 1E-25 2.2E-30 197.4 34.3 290 251-544 21-346 (350)
84 KOG1036 Mitotic spindle checkp 100.0 7.8E-27 1.7E-31 213.7 26.8 270 261-537 11-294 (323)
85 KOG0310 Conserved WD40 repeat- 100.0 1.4E-27 3E-32 230.6 22.9 243 258-506 63-309 (487)
86 KOG1539 WD repeat protein [Gen 100.0 4.9E-26 1.1E-30 232.2 35.0 304 237-544 179-645 (910)
87 KOG0275 Conserved WD40 repeat- 100.0 2.6E-28 5.7E-33 223.8 16.5 263 236-504 231-507 (508)
88 PTZ00421 coronin; Provisional 100.0 6.6E-26 1.4E-30 235.4 35.2 245 257-508 69-333 (493)
89 KOG0294 WD40 repeat-containing 100.0 1.5E-26 3.3E-31 212.1 25.5 258 278-545 4-279 (362)
90 KOG0305 Anaphase promoting com 100.0 1.9E-26 4.2E-31 231.2 27.4 260 239-508 196-463 (484)
91 KOG0299 U3 snoRNP-associated p 100.0 2.5E-26 5.4E-31 220.4 26.6 273 256-535 135-443 (479)
92 KOG2096 WD40 repeat protein [G 100.0 3.8E-26 8.2E-31 209.5 25.5 285 256-544 79-399 (420)
93 KOG0301 Phospholipase A2-activ 100.0 3.2E-26 6.9E-31 229.4 27.2 275 254-544 5-285 (745)
94 KOG1408 WD40 repeat protein [F 100.0 1.3E-26 2.7E-31 232.1 23.9 306 239-545 345-711 (1080)
95 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 5.4E-25 1.2E-29 217.7 35.6 263 276-545 2-277 (300)
96 KOG0643 Translation initiation 100.0 6.9E-26 1.5E-30 203.3 25.4 234 300-537 5-251 (327)
97 PTZ00420 coronin; Provisional 99.9 4.2E-25 9.1E-30 230.4 34.2 245 236-488 50-318 (568)
98 KOG0973 Histone transcription 99.9 3.8E-26 8.3E-31 240.2 26.0 252 254-509 60-358 (942)
99 KOG1273 WD40 repeat protein [G 99.9 6.8E-26 1.5E-30 207.6 23.6 276 266-545 26-320 (405)
100 KOG0299 U3 snoRNP-associated p 99.9 7.1E-26 1.5E-30 217.3 24.0 233 260-496 199-445 (479)
101 KOG2055 WD40 repeat protein [G 99.9 1.4E-25 3.1E-30 215.1 25.4 283 262-545 212-510 (514)
102 KOG0308 Conserved WD40 repeat- 99.9 4.1E-26 8.9E-31 227.0 19.7 307 235-545 42-391 (735)
103 KOG0641 WD40 repeat protein [G 99.9 8.1E-24 1.8E-28 185.5 31.5 248 256-506 82-349 (350)
104 KOG0647 mRNA export protein (c 99.9 8.4E-25 1.8E-29 199.6 25.7 252 236-497 46-314 (347)
105 KOG0639 Transducin-like enhanc 99.9 9.5E-26 2.1E-30 217.9 19.7 277 261-544 417-701 (705)
106 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.7E-23 5.9E-28 205.5 37.8 278 238-527 9-300 (300)
107 KOG1332 Vesicle coat complex C 99.9 1.2E-25 2.5E-30 199.5 18.1 248 259-506 7-286 (299)
108 KOG1446 Histone H3 (Lys4) meth 99.9 6.5E-24 1.4E-28 195.6 29.9 248 294-545 3-260 (311)
109 KOG2106 Uncharacterized conser 99.9 3.6E-23 7.8E-28 200.5 36.0 257 241-505 223-520 (626)
110 KOG1332 Vesicle coat complex C 99.9 1.2E-25 2.6E-30 199.4 17.1 243 302-545 8-284 (299)
111 KOG0301 Phospholipase A2-activ 99.9 7.7E-25 1.7E-29 219.5 24.7 256 235-507 30-289 (745)
112 KOG0268 Sof1-like rRNA process 99.9 8E-26 1.7E-30 210.7 16.0 263 235-509 84-348 (433)
113 KOG0650 WD40 repeat nucleolar 99.9 8.2E-25 1.8E-29 215.7 23.0 289 251-544 388-732 (733)
114 KOG0269 WD40 repeat-containing 99.9 2.5E-25 5.4E-30 225.5 19.6 275 265-542 41-335 (839)
115 KOG0289 mRNA splicing factor [ 99.9 2.3E-24 5.1E-29 205.3 24.7 264 236-505 237-505 (506)
116 KOG1408 WD40 repeat protein [F 99.9 8.3E-25 1.8E-29 219.2 22.7 243 262-507 458-714 (1080)
117 KOG0264 Nucleosome remodeling 99.9 1.3E-24 2.8E-29 208.8 23.0 253 256-508 117-406 (422)
118 KOG0640 mRNA cleavage stimulat 99.9 3.6E-25 7.7E-30 202.4 18.2 289 214-506 124-426 (430)
119 KOG0646 WD40 repeat protein [G 99.9 1E-24 2.2E-29 209.8 20.8 247 241-493 62-336 (476)
120 KOG2106 Uncharacterized conser 99.9 1.9E-22 4.1E-27 195.5 35.9 294 235-545 175-519 (626)
121 KOG4283 Transcription-coupled 99.9 1.2E-23 2.6E-28 191.3 25.6 283 258-544 38-362 (397)
122 KOG0264 Nucleosome remodeling 99.9 2.4E-24 5.3E-29 206.9 22.1 242 302-545 121-402 (422)
123 KOG1063 RNA polymerase II elon 99.9 1.4E-23 3E-28 210.5 27.5 284 258-545 262-646 (764)
124 KOG1274 WD40 repeat protein [G 99.9 2.9E-23 6.3E-28 214.4 29.5 276 260-543 10-296 (933)
125 KOG0772 Uncharacterized conser 99.9 5.7E-24 1.2E-28 206.5 22.7 265 236-504 185-485 (641)
126 KOG1539 WD repeat protein [Gen 99.9 1.8E-22 3.9E-27 206.4 32.5 303 238-545 132-604 (910)
127 KOG2445 Nuclear pore complex c 99.9 5.5E-23 1.2E-27 188.2 25.8 257 260-545 10-316 (361)
128 KOG0321 WD40 repeat-containing 99.9 7.7E-24 1.7E-28 210.5 21.8 276 268-545 54-389 (720)
129 KOG0300 WD40 repeat-containing 99.9 1.2E-23 2.7E-28 192.8 20.2 257 278-545 127-426 (481)
130 KOG0267 Microtubule severing p 99.9 3.2E-25 6.9E-30 223.0 9.9 238 256-498 21-260 (825)
131 KOG0639 Transducin-like enhanc 99.9 6.9E-24 1.5E-28 205.1 17.5 261 238-505 438-703 (705)
132 KOG0267 Microtubule severing p 99.9 5.6E-25 1.2E-29 221.3 10.3 253 275-538 4-259 (825)
133 KOG1274 WD40 repeat protein [G 99.9 2E-22 4.3E-27 208.3 26.7 238 302-545 10-260 (933)
134 KOG1036 Mitotic spindle checkp 99.9 2.5E-22 5.4E-27 184.3 24.2 234 304-545 12-260 (323)
135 KOG2048 WD40 repeat protein [G 99.9 2E-21 4.3E-26 194.9 32.2 278 257-543 19-315 (691)
136 KOG0646 WD40 repeat protein [G 99.9 2E-22 4.3E-27 194.2 24.1 258 281-545 13-305 (476)
137 KOG2048 WD40 repeat protein [G 99.9 1.3E-20 2.8E-25 189.1 35.2 220 239-463 46-277 (691)
138 KOG4328 WD40 protein [Function 99.9 5.5E-22 1.2E-26 190.5 24.2 291 252-544 175-492 (498)
139 KOG4283 Transcription-coupled 99.9 5E-22 1.1E-26 180.8 21.5 209 302-510 40-280 (397)
140 KOG0302 Ribosome Assembly prot 99.9 5.1E-22 1.1E-26 186.4 21.6 244 259-503 147-435 (440)
141 KOG1063 RNA polymerase II elon 99.9 5.9E-22 1.3E-26 198.9 23.1 305 239-545 168-600 (764)
142 KOG1034 Transcriptional repres 99.9 8.8E-22 1.9E-26 181.9 21.8 285 257-545 32-381 (385)
143 KOG1538 Uncharacterized conser 99.9 1.2E-21 2.7E-26 195.2 23.7 270 265-545 14-291 (1081)
144 KOG2055 WD40 repeat protein [G 99.9 6.2E-22 1.3E-26 190.3 20.7 265 238-506 233-512 (514)
145 KOG4378 Nuclear protein COP1 [ 99.9 1.1E-21 2.4E-26 189.8 21.2 282 241-529 13-305 (673)
146 KOG0269 WD40 repeat-containing 99.9 1.6E-22 3.5E-27 205.2 15.2 237 266-506 90-340 (839)
147 KOG2096 WD40 repeat protein [G 99.9 2.6E-21 5.7E-26 177.9 21.1 243 299-544 80-357 (420)
148 KOG0307 Vesicle coat complex C 99.9 1.3E-22 2.9E-27 214.5 13.4 274 268-544 11-324 (1049)
149 KOG0270 WD40 repeat-containing 99.9 2.8E-21 6E-26 185.2 20.6 243 267-511 177-454 (463)
150 KOG2919 Guanine nucleotide-bin 99.9 8.1E-21 1.7E-25 175.1 22.7 268 266-538 52-361 (406)
151 KOG0302 Ribosome Assembly prot 99.9 8.3E-21 1.8E-25 178.3 20.9 241 302-544 148-435 (440)
152 KOG4328 WD40 protein [Function 99.9 5.8E-21 1.3E-25 183.5 20.2 256 290-545 171-448 (498)
153 KOG4378 Nuclear protein COP1 [ 99.9 1.8E-20 3.9E-25 181.4 22.2 247 236-488 53-305 (673)
154 KOG1445 Tumor-specific antigen 99.9 8.4E-20 1.8E-24 181.3 26.6 135 410-545 601-748 (1012)
155 KOG0321 WD40 repeat-containing 99.9 1.4E-20 3.1E-25 187.4 21.2 250 256-508 93-393 (720)
156 KOG0650 WD40 repeat nucleolar 99.9 1.6E-20 3.6E-25 185.6 21.2 242 298-544 393-677 (733)
157 KOG1009 Chromatin assembly com 99.9 5.8E-20 1.3E-24 174.4 23.8 279 262-543 12-368 (434)
158 KOG4227 WD40 repeat protein [G 99.9 3E-20 6.5E-25 175.0 21.2 286 255-545 48-385 (609)
159 COG2319 FOG: WD40 repeat [Gene 99.9 5.8E-18 1.3E-22 173.7 40.5 298 238-545 132-440 (466)
160 KOG0307 Vesicle coat complex C 99.9 2.6E-21 5.5E-26 204.9 15.4 243 264-509 65-330 (1049)
161 KOG0270 WD40 repeat-containing 99.9 6.9E-20 1.5E-24 175.7 23.3 237 307-545 175-447 (463)
162 COG2319 FOG: WD40 repeat [Gene 99.9 6.8E-18 1.5E-22 173.3 39.4 284 258-545 60-357 (466)
163 KOG0322 G-protein beta subunit 99.9 1.5E-20 3.3E-25 168.9 15.2 285 255-545 6-321 (323)
164 KOG0642 Cell-cycle nuclear pro 99.9 2E-20 4.2E-25 184.4 17.2 256 257-517 288-573 (577)
165 KOG1273 WD40 repeat protein [G 99.8 3.5E-19 7.6E-24 163.8 22.7 233 308-545 26-278 (405)
166 PRK11028 6-phosphogluconolacto 99.8 1.7E-17 3.7E-22 166.9 35.4 265 238-506 10-304 (330)
167 PRK11028 6-phosphogluconolacto 99.8 6.9E-18 1.5E-22 169.7 32.0 265 279-545 6-302 (330)
168 KOG0303 Actin-binding protein 99.8 1.2E-18 2.5E-23 164.8 23.6 228 300-528 76-320 (472)
169 KOG1009 Chromatin assembly com 99.8 1.2E-18 2.6E-23 165.5 23.5 254 252-509 54-375 (434)
170 KOG1188 WD40 repeat protein [G 99.8 2.7E-19 5.9E-24 166.4 17.9 269 276-545 41-344 (376)
171 KOG1310 WD40 repeat protein [G 99.8 5.8E-19 1.3E-23 173.0 19.9 208 255-462 42-304 (758)
172 KOG1007 WD repeat protein TSSC 99.8 1.9E-18 4E-23 157.3 21.1 287 239-543 39-357 (370)
173 KOG0644 Uncharacterized conser 99.8 2.5E-20 5.4E-25 190.4 9.8 273 255-544 182-465 (1113)
174 KOG1517 Guanine nucleotide bin 99.8 1E-17 2.2E-22 175.5 29.2 279 263-544 1064-1378(1387)
175 KOG1334 WD40 repeat protein [G 99.8 8.4E-20 1.8E-24 176.8 12.6 292 253-544 132-463 (559)
176 KOG0303 Actin-binding protein 99.8 2.9E-18 6.4E-23 162.1 20.2 228 254-487 72-320 (472)
177 KOG1034 Transcriptional repres 99.8 3.4E-18 7.4E-23 158.3 19.1 242 261-506 87-383 (385)
178 KOG0649 WD40 repeat protein [G 99.8 6.1E-17 1.3E-21 144.1 25.5 268 265-544 12-313 (325)
179 KOG0290 Conserved WD40 repeat- 99.8 4E-17 8.8E-22 148.8 23.7 240 260-502 93-361 (364)
180 KOG0642 Cell-cycle nuclear pro 99.8 1.6E-18 3.5E-23 171.0 15.7 236 237-475 313-572 (577)
181 KOG2445 Nuclear pore complex c 99.8 1E-16 2.2E-21 147.4 25.9 255 214-474 13-331 (361)
182 KOG1587 Cytoplasmic dynein int 99.8 6E-17 1.3E-21 167.7 27.5 258 285-545 222-514 (555)
183 KOG1188 WD40 repeat protein [G 99.8 1.2E-17 2.6E-22 155.5 18.0 265 239-506 49-346 (376)
184 KOG2919 Guanine nucleotide-bin 99.8 4.2E-17 9.2E-22 150.7 21.2 233 308-545 52-325 (406)
185 KOG1240 Protein kinase contain 99.8 7.4E-17 1.6E-21 171.6 26.0 289 254-545 1039-1431(1431)
186 KOG0649 WD40 repeat protein [G 99.8 1.6E-16 3.4E-21 141.5 23.6 226 307-544 12-271 (325)
187 KOG1963 WD40 repeat protein [G 99.8 3E-16 6.6E-21 162.6 28.6 282 260-545 202-536 (792)
188 KOG1587 Cytoplasmic dynein int 99.8 4.9E-17 1.1E-21 168.3 22.7 264 241-508 223-518 (555)
189 KOG2110 Uncharacterized conser 99.8 2.7E-15 6E-20 141.4 31.4 232 264-507 6-249 (391)
190 KOG1538 Uncharacterized conser 99.8 5.3E-17 1.1E-21 162.5 20.9 251 241-506 34-293 (1081)
191 PRK01742 tolB translocation pr 99.8 9.6E-17 2.1E-21 166.7 23.7 232 284-528 183-426 (429)
192 KOG1524 WD40 repeat-containing 99.8 5.2E-17 1.1E-21 159.0 19.2 261 261-543 12-282 (737)
193 PRK01742 tolB translocation pr 99.7 1.3E-16 2.9E-21 165.7 22.4 234 239-487 183-426 (429)
194 KOG2110 Uncharacterized conser 99.7 1.6E-15 3.5E-20 143.0 26.7 230 305-545 5-246 (391)
195 KOG4497 Uncharacterized conser 99.7 2.3E-15 5.1E-20 139.5 26.5 271 264-540 49-425 (447)
196 KOG2139 WD40 repeat protein [G 99.7 2.2E-15 4.7E-20 141.5 25.5 277 264-544 99-428 (445)
197 KOG1007 WD repeat protein TSSC 99.7 1.5E-16 3.2E-21 145.0 17.0 209 252-462 111-362 (370)
198 KOG1963 WD40 repeat protein [G 99.7 1.7E-15 3.8E-20 157.1 26.9 272 268-543 21-318 (792)
199 KOG1272 WD40-repeat-containing 99.7 1.9E-17 4.1E-22 159.7 11.6 262 266-539 132-401 (545)
200 PRK03629 tolB translocation pr 99.7 5.1E-15 1.1E-19 153.5 30.1 235 285-528 179-428 (429)
201 KOG0290 Conserved WD40 repeat- 99.7 4.1E-16 8.9E-21 142.3 18.8 238 306-545 45-316 (364)
202 KOG1523 Actin-related protein 99.7 1.5E-15 3.3E-20 140.5 22.2 224 261-487 8-260 (361)
203 KOG0771 Prolactin regulatory e 99.7 2.7E-16 5.8E-21 150.7 16.3 194 267-462 148-355 (398)
204 PF02239 Cytochrom_D1: Cytochr 99.7 4.2E-14 9E-19 142.6 32.9 298 239-545 15-345 (369)
205 KOG2321 WD40 repeat protein [G 99.7 3.9E-15 8.4E-20 147.3 24.0 276 261-543 49-339 (703)
206 PRK04922 tolB translocation pr 99.7 7E-15 1.5E-19 153.1 26.1 234 285-527 184-432 (433)
207 PRK05137 tolB translocation pr 99.7 2.2E-14 4.8E-19 149.5 29.3 234 285-528 182-433 (435)
208 KOG1517 Guanine nucleotide bin 99.7 3.1E-15 6.7E-20 157.2 22.1 268 240-508 1086-1383(1387)
209 KOG1523 Actin-related protein 99.7 4.5E-15 9.7E-20 137.4 20.5 233 304-538 9-269 (361)
210 KOG0644 Uncharacterized conser 99.7 1.2E-16 2.5E-21 163.9 10.0 280 211-510 187-472 (1113)
211 KOG4227 WD40 repeat protein [G 99.7 1E-14 2.2E-19 138.0 22.1 268 236-505 74-386 (609)
212 KOG1524 WD40 repeat-containing 99.7 1.7E-15 3.8E-20 148.5 17.1 206 276-502 76-282 (737)
213 KOG2111 Uncharacterized conser 99.7 3E-13 6.6E-18 125.4 30.0 233 265-507 7-257 (346)
214 KOG0771 Prolactin regulatory e 99.7 1.2E-14 2.6E-19 139.5 20.9 190 352-543 148-350 (398)
215 PRK02889 tolB translocation pr 99.7 5.3E-14 1.2E-18 146.0 27.3 235 285-528 176-425 (427)
216 KOG2394 WD40 protein DMR-N9 [G 99.7 7.1E-15 1.5E-19 144.5 19.2 243 266-527 126-384 (636)
217 KOG3881 Uncharacterized conser 99.7 1.7E-14 3.6E-19 137.1 20.6 260 263-528 55-342 (412)
218 KOG1445 Tumor-specific antigen 99.7 4.8E-15 1E-19 147.9 17.8 239 271-511 587-849 (1012)
219 PRK04922 tolB translocation pr 99.6 5.6E-14 1.2E-18 146.3 26.6 234 240-486 184-432 (433)
220 PRK03629 tolB translocation pr 99.6 9.3E-14 2E-18 144.1 27.6 234 240-486 179-427 (429)
221 KOG2315 Predicted translation 99.6 2E-13 4.2E-18 135.5 27.9 268 263-545 34-388 (566)
222 KOG2111 Uncharacterized conser 99.6 1.5E-13 3.2E-18 127.5 24.9 231 307-544 7-253 (346)
223 PF10282 Lactonase: Lactonase, 99.6 6.2E-12 1.3E-16 126.8 39.3 263 263-525 36-345 (345)
224 KOG1354 Serine/threonine prote 99.6 8.6E-14 1.9E-18 130.0 21.8 277 263-544 25-431 (433)
225 PRK02889 tolB translocation pr 99.6 1.3E-13 2.8E-18 143.2 24.4 223 258-487 190-425 (427)
226 PRK05137 tolB translocation pr 99.6 3.2E-13 6.9E-18 140.8 27.2 232 241-486 183-432 (435)
227 PF10282 Lactonase: Lactonase, 99.6 9.3E-12 2E-16 125.6 36.9 268 278-545 2-320 (345)
228 KOG1272 WD40-repeat-containing 99.6 1.2E-15 2.6E-20 147.4 8.0 228 307-545 131-360 (545)
229 TIGR02800 propeller_TolB tol-p 99.6 4.8E-13 1E-17 139.1 28.0 232 285-525 170-416 (417)
230 KOG1409 Uncharacterized conser 99.6 8.2E-14 1.8E-18 130.3 19.4 252 251-507 12-271 (404)
231 KOG3881 Uncharacterized conser 99.6 1.5E-13 3.2E-18 130.7 20.9 237 304-545 54-318 (412)
232 PF02239 Cytochrom_D1: Cytochr 99.6 3.1E-12 6.8E-17 129.0 32.0 262 277-545 7-300 (369)
233 KOG1310 WD40 repeat protein [G 99.6 1.2E-14 2.6E-19 143.0 13.2 216 296-511 41-308 (758)
234 KOG2139 WD40 repeat protein [G 99.6 3.4E-13 7.3E-18 126.9 21.6 228 306-538 99-366 (445)
235 KOG1240 Protein kinase contain 99.6 3.3E-13 7.1E-18 144.4 24.2 251 290-545 1034-1332(1431)
236 PRK00178 tolB translocation pr 99.6 1.8E-12 3.8E-17 135.3 29.2 234 286-528 180-428 (430)
237 KOG0322 G-protein beta subunit 99.6 7.7E-14 1.7E-18 126.0 15.4 259 236-505 31-322 (323)
238 KOG4497 Uncharacterized conser 99.5 4.3E-14 9.4E-19 131.2 12.2 222 310-544 13-237 (447)
239 PRK04792 tolB translocation pr 99.5 2.8E-12 6.2E-17 133.6 27.1 234 286-528 199-447 (448)
240 PF08662 eIF2A: Eukaryotic tra 99.5 1.6E-12 3.6E-17 119.2 19.8 145 393-545 8-177 (194)
241 PRK00178 tolB translocation pr 99.5 1.3E-11 2.7E-16 128.9 28.3 222 257-487 192-428 (430)
242 KOG2394 WD40 protein DMR-N9 [G 99.5 4.5E-13 9.7E-18 132.0 16.0 193 273-486 183-384 (636)
243 COG2706 3-carboxymuconate cycl 99.5 2.2E-10 4.7E-15 109.0 33.3 268 259-526 35-345 (346)
244 COG5354 Uncharacterized protei 99.5 5E-11 1.1E-15 117.2 28.7 273 264-545 72-393 (561)
245 KOG1334 WD40 repeat protein [G 99.5 2.9E-13 6.4E-18 131.9 12.6 270 235-509 159-469 (559)
246 KOG0974 WD-repeat protein WDR6 99.5 1.7E-12 3.7E-17 137.4 19.2 268 262-545 6-286 (967)
247 TIGR02658 TTQ_MADH_Hv methylam 99.5 3.6E-10 7.7E-15 111.7 34.0 256 285-545 27-328 (352)
248 KOG2321 WD40 repeat protein [G 99.5 4.5E-12 9.8E-17 125.9 20.5 237 303-545 49-300 (703)
249 PRK04792 tolB translocation pr 99.5 1.8E-11 3.9E-16 127.6 26.1 220 258-486 212-446 (448)
250 PRK01029 tolB translocation pr 99.5 4.1E-11 8.9E-16 124.0 28.5 238 285-529 165-426 (428)
251 PF08662 eIF2A: Eukaryotic tra 99.5 8.7E-12 1.9E-16 114.5 20.7 153 268-426 10-184 (194)
252 PRK01029 tolB translocation pr 99.5 3.6E-11 7.9E-16 124.4 27.3 213 328-544 166-400 (428)
253 COG2706 3-carboxymuconate cycl 99.5 5E-10 1.1E-14 106.6 31.7 260 284-544 15-318 (346)
254 TIGR02800 propeller_TolB tol-p 99.5 4E-11 8.7E-16 124.7 27.0 205 327-539 170-386 (417)
255 KOG4190 Uncharacterized conser 99.4 1.8E-12 3.9E-17 127.9 12.7 281 255-543 727-1032(1034)
256 KOG2315 Predicted translation 99.4 1.6E-10 3.5E-15 115.1 25.3 273 239-527 104-410 (566)
257 KOG2314 Translation initiation 99.4 9.6E-11 2.1E-15 116.2 23.1 271 265-540 251-560 (698)
258 KOG4547 WD40 repeat-containing 99.4 1.4E-10 3E-15 116.4 24.5 187 273-462 3-221 (541)
259 KOG2041 WD40 repeat protein [G 99.4 1E-10 2.2E-15 119.0 21.1 276 262-543 13-333 (1189)
260 TIGR03300 assembly_YfgL outer 99.3 2.2E-09 4.8E-14 110.0 31.4 254 274-545 104-377 (377)
261 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.9E-08 4.2E-13 99.5 36.1 258 240-512 27-336 (352)
262 COG5354 Uncharacterized protei 99.3 5E-10 1.1E-14 110.4 23.7 271 262-545 31-346 (561)
263 KOG0280 Uncharacterized conser 99.3 1.1E-10 2.3E-15 107.6 15.8 198 266-463 124-335 (339)
264 TIGR03300 assembly_YfgL outer 99.3 9.8E-09 2.1E-13 105.2 31.1 254 275-545 65-336 (377)
265 COG5170 CDC55 Serine/threonine 99.3 2.2E-10 4.7E-15 106.1 16.6 238 263-504 26-365 (460)
266 PRK04043 tolB translocation pr 99.3 8.8E-09 1.9E-13 106.0 30.3 227 285-523 169-417 (419)
267 KOG4547 WD40 repeat-containing 99.3 1E-09 2.2E-14 110.2 22.4 187 315-506 3-220 (541)
268 KOG0280 Uncharacterized conser 99.3 9.6E-10 2.1E-14 101.4 20.0 231 265-496 71-321 (339)
269 KOG0974 WD-repeat protein WDR6 99.2 6.7E-10 1.5E-14 118.0 20.7 196 263-463 87-290 (967)
270 PF04762 IKI3: IKI3 family; I 99.2 3.3E-08 7.2E-13 110.6 35.3 282 261-545 73-454 (928)
271 COG4946 Uncharacterized protei 99.2 2E-08 4.4E-13 98.2 29.0 283 240-536 204-507 (668)
272 KOG1354 Serine/threonine prote 99.2 4.9E-10 1.1E-14 105.2 16.9 228 305-545 25-299 (433)
273 PLN02919 haloacid dehalogenase 99.2 2E-08 4.3E-13 114.4 33.2 237 267-510 571-892 (1057)
274 PLN02919 haloacid dehalogenase 99.2 1.5E-08 3.2E-13 115.4 32.1 232 309-545 571-886 (1057)
275 PRK04043 tolB translocation pr 99.2 1.4E-08 3E-13 104.6 28.3 200 328-538 170-388 (419)
276 KOG2314 Translation initiation 99.2 1E-08 2.3E-13 102.0 25.0 270 267-545 214-523 (698)
277 KOG0309 Conserved WD40 repeat- 99.2 1.9E-10 4.1E-15 117.5 12.9 279 264-545 25-337 (1081)
278 KOG1409 Uncharacterized conser 99.2 6.2E-10 1.3E-14 104.6 15.3 245 296-545 15-268 (404)
279 KOG1064 RAVE (regulator of V-A 99.2 1.4E-10 3.1E-15 128.5 12.4 210 317-545 2180-2396(2439)
280 KOG1064 RAVE (regulator of V-A 99.2 1.3E-10 2.8E-15 128.8 11.5 180 235-429 2225-2407(2439)
281 KOG1912 WD40 repeat protein [G 99.1 8.6E-09 1.9E-13 106.3 20.3 237 265-507 17-305 (1062)
282 PF08450 SGL: SMP-30/Gluconola 99.1 1.1E-06 2.3E-11 84.4 33.4 218 268-496 4-245 (246)
283 KOG1912 WD40 repeat protein [G 99.1 3.1E-08 6.8E-13 102.3 23.4 210 252-462 44-305 (1062)
284 KOG0309 Conserved WD40 repeat- 99.1 4.9E-10 1.1E-14 114.6 10.3 207 256-462 107-340 (1081)
285 PF08450 SGL: SMP-30/Gluconola 99.1 7.5E-07 1.6E-11 85.5 31.9 216 309-534 3-242 (246)
286 COG4946 Uncharacterized protei 99.1 5.6E-08 1.2E-12 95.2 23.6 147 260-409 356-507 (668)
287 KOG2041 WD40 repeat protein [G 99.1 3.9E-09 8.5E-14 107.7 15.9 231 306-539 15-280 (1189)
288 KOG4532 WD40-like repeat conta 99.1 4.7E-08 1E-12 89.2 20.8 249 283-538 50-323 (344)
289 PF13360 PQQ_2: PQQ-like domai 99.0 3.7E-07 7.9E-12 87.0 26.8 215 284-511 2-235 (238)
290 KOG4190 Uncharacterized conser 99.0 2.5E-09 5.5E-14 106.0 9.9 207 298-511 728-953 (1034)
291 PRK11138 outer membrane biogen 99.0 7.2E-07 1.6E-11 92.0 28.4 254 275-545 120-392 (394)
292 COG5170 CDC55 Serine/threonine 98.9 6.9E-09 1.5E-13 96.3 11.0 232 305-545 26-307 (460)
293 PF15492 Nbas_N: Neuroblastoma 98.9 1.1E-06 2.4E-11 81.6 24.0 227 269-511 3-264 (282)
294 KOG1832 HIV-1 Vpr-binding prot 98.9 1.2E-09 2.6E-14 113.7 4.8 265 251-535 1089-1377(1516)
295 KOG0882 Cyclophilin-related pe 98.9 2.5E-08 5.3E-13 97.1 13.1 252 262-516 8-315 (558)
296 PF04762 IKI3: IKI3 family; I 98.9 1.1E-05 2.4E-10 90.6 35.0 265 239-508 236-566 (928)
297 KOG3914 WD repeat protein WDR4 98.8 2.2E-08 4.8E-13 96.4 11.2 118 269-389 113-233 (390)
298 PRK11138 outer membrane biogen 98.8 1.5E-06 3.3E-11 89.5 25.8 255 275-545 69-351 (394)
299 PF13360 PQQ_2: PQQ-like domai 98.8 1.9E-06 4.1E-11 82.1 24.2 210 326-545 2-228 (238)
300 KOG4532 WD40-like repeat conta 98.8 1.4E-06 3E-11 79.8 21.0 235 274-511 83-336 (344)
301 KOG1645 RING-finger-containing 98.8 5.5E-07 1.2E-11 86.8 17.8 249 287-545 175-459 (463)
302 PF07433 DUF1513: Protein of u 98.8 2.1E-05 4.5E-10 75.5 28.4 229 267-502 8-281 (305)
303 KOG1832 HIV-1 Vpr-binding prot 98.7 5.8E-09 1.3E-13 108.8 4.0 201 294-511 1090-1296(1516)
304 KOG4714 Nucleoporin [Nuclear s 98.7 1.9E-07 4.2E-12 84.9 12.5 166 255-421 81-255 (319)
305 KOG1645 RING-finger-containing 98.7 6.3E-07 1.4E-11 86.5 16.5 246 253-506 183-461 (463)
306 KOG1275 PAB-dependent poly(A) 98.7 4.2E-07 9.2E-12 95.8 16.0 181 274-460 146-341 (1118)
307 KOG0882 Cyclophilin-related pe 98.7 2.3E-07 5E-12 90.5 12.9 223 239-463 29-307 (558)
308 PF00930 DPPIV_N: Dipeptidyl p 98.7 9.5E-06 2.1E-10 82.2 25.5 259 272-536 1-346 (353)
309 KOG3914 WD repeat protein WDR4 98.7 2.3E-07 4.9E-12 89.6 12.5 157 308-465 65-227 (390)
310 PF15492 Nbas_N: Neuroblastoma 98.7 1.7E-05 3.8E-10 73.9 24.2 188 265-463 45-261 (282)
311 PRK02888 nitrous-oxide reducta 98.7 1.1E-05 2.4E-10 84.3 25.5 149 357-507 201-405 (635)
312 KOG1920 IkappaB kinase complex 98.7 6.5E-06 1.4E-10 89.8 24.3 242 264-511 69-327 (1265)
313 PF07433 DUF1513: Protein of u 98.7 5.3E-05 1.2E-09 72.8 27.7 226 308-538 7-277 (305)
314 KOG2695 WD40 repeat protein [G 98.6 1.3E-07 2.8E-12 89.3 8.6 160 365-526 228-401 (425)
315 PF00400 WD40: WD domain, G-be 98.6 1.7E-07 3.8E-12 61.5 6.7 38 254-291 2-39 (39)
316 PF04053 Coatomer_WDAD: Coatom 98.6 1.6E-05 3.5E-10 81.8 23.6 221 304-544 31-259 (443)
317 KOG2066 Vacuolar assembly/sort 98.6 2.4E-06 5.1E-11 89.4 17.3 183 263-462 39-234 (846)
318 PF00400 WD40: WD domain, G-be 98.6 2.6E-07 5.6E-12 60.7 6.4 39 295-333 1-39 (39)
319 PF02897 Peptidase_S9_N: Proly 98.5 0.00041 9E-09 72.0 33.5 243 266-513 126-411 (414)
320 KOG2695 WD40 repeat protein [G 98.5 3.5E-07 7.6E-12 86.5 9.0 158 269-430 217-386 (425)
321 cd00216 PQQ_DH Dehydrogenases 98.5 9.9E-05 2.1E-09 78.1 28.1 258 275-545 61-422 (488)
322 COG3391 Uncharacterized conser 98.5 0.00029 6.4E-09 72.0 30.5 254 287-543 13-279 (381)
323 KOG2114 Vacuolar assembly/sort 98.5 2.8E-05 6.1E-10 82.1 22.9 204 312-520 30-259 (933)
324 KOG1275 PAB-dependent poly(A) 98.5 6.7E-06 1.5E-10 87.0 18.0 174 364-545 150-340 (1118)
325 KOG4714 Nucleoporin [Nuclear s 98.5 6.4E-07 1.4E-11 81.6 8.9 109 272-380 141-255 (319)
326 KOG2114 Vacuolar assembly/sort 98.5 8.7E-05 1.9E-09 78.6 24.9 195 265-463 27-245 (933)
327 PF14583 Pectate_lyase22: Olig 98.5 0.0011 2.5E-08 65.7 31.4 268 270-544 42-378 (386)
328 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00016 3.5E-09 66.4 23.1 258 274-545 62-349 (354)
329 PF11768 DUF3312: Protein of u 98.4 0.00061 1.3E-08 69.9 29.6 90 454-545 237-327 (545)
330 PF08596 Lgl_C: Lethal giant l 98.4 6.6E-05 1.4E-09 76.3 22.9 261 265-538 3-327 (395)
331 COG0823 TolB Periplasmic compo 98.4 4.7E-05 1E-09 78.2 21.7 197 295-498 182-391 (425)
332 KOG2066 Vacuolar assembly/sort 98.4 2.9E-05 6.3E-10 81.5 19.5 181 305-506 39-233 (846)
333 KOG3621 WD40 repeat-containing 98.4 7.2E-05 1.6E-09 77.6 21.8 143 265-410 35-188 (726)
334 KOG1920 IkappaB kinase complex 98.4 9.1E-05 2E-09 81.2 23.5 231 304-544 67-319 (1265)
335 PF06433 Me-amine-dh_H: Methyl 98.3 0.00066 1.4E-08 66.1 26.5 256 285-545 17-318 (342)
336 cd00216 PQQ_DH Dehydrogenases 98.3 0.00042 9.1E-09 73.4 27.8 228 276-511 111-429 (488)
337 COG0823 TolB Periplasmic compo 98.3 3.6E-05 7.8E-10 79.0 18.8 189 341-534 185-386 (425)
338 PRK02888 nitrous-oxide reducta 98.3 8.8E-05 1.9E-09 77.7 20.5 215 271-495 200-450 (635)
339 KOG3617 WD40 and TPR repeat-co 98.3 2.4E-05 5.3E-10 82.1 15.5 109 268-380 20-132 (1416)
340 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00086 1.9E-08 68.0 26.9 248 240-496 23-347 (353)
341 COG3391 Uncharacterized conser 98.2 0.00058 1.3E-08 69.8 25.3 220 266-488 76-310 (381)
342 PF04053 Coatomer_WDAD: Coatom 98.2 0.00078 1.7E-08 69.6 24.7 219 263-506 32-262 (443)
343 KOG3617 WD40 and TPR repeat-co 98.2 2E-05 4.4E-10 82.7 12.6 262 266-536 62-374 (1416)
344 PF11768 DUF3312: Protein of u 98.1 0.00019 4.2E-09 73.5 18.9 115 347-463 204-331 (545)
345 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.00064 1.4E-08 62.6 19.7 149 356-508 18-167 (354)
346 PF06977 SdiA-regulated: SdiA- 98.1 0.0021 4.7E-08 60.9 24.3 199 343-544 16-247 (248)
347 KOG1008 Uncharacterized conser 98.1 7.9E-07 1.7E-11 90.6 1.1 198 305-506 56-275 (783)
348 PF03178 CPSF_A: CPSF A subuni 98.1 0.00068 1.5E-08 67.8 22.3 208 328-543 3-261 (321)
349 PF03178 CPSF_A: CPSF A subuni 98.1 0.0021 4.6E-08 64.2 25.8 213 285-502 2-261 (321)
350 KOG1008 Uncharacterized conser 98.1 1.7E-06 3.6E-11 88.3 3.3 197 265-462 58-276 (783)
351 PF06433 Me-amine-dh_H: Methyl 98.1 0.0014 2.9E-08 64.0 23.0 240 226-473 53-329 (342)
352 PF00780 CNH: CNH domain; Int 98.1 0.0052 1.1E-07 59.8 27.9 224 273-512 5-261 (275)
353 PF06977 SdiA-regulated: SdiA- 98.1 0.0073 1.6E-07 57.3 27.1 200 256-458 14-247 (248)
354 PF00780 CNH: CNH domain; Int 98.0 0.0028 6E-08 61.8 24.6 215 316-545 6-253 (275)
355 COG3386 Gluconolactonase [Carb 98.0 0.0044 9.6E-08 60.8 24.5 216 311-534 30-272 (307)
356 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.015 3.2E-07 62.0 30.0 187 275-465 69-337 (527)
357 PF08596 Lgl_C: Lethal giant l 97.9 0.0015 3.3E-08 66.5 20.9 207 251-460 74-334 (395)
358 PF02897 Peptidase_S9_N: Proly 97.9 0.01 2.2E-07 61.6 27.3 221 307-530 125-383 (414)
359 PF04841 Vps16_N: Vps16, N-ter 97.9 0.041 8.8E-07 56.8 30.4 192 286-489 62-272 (410)
360 PF08553 VID27: VID27 cytoplas 97.8 0.0037 8.1E-08 68.2 22.7 141 317-460 493-646 (794)
361 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.085 1.8E-06 56.3 31.7 149 276-425 121-338 (527)
362 PF05694 SBP56: 56kDa selenium 97.7 0.044 9.5E-07 55.2 25.8 221 274-496 86-393 (461)
363 KOG4640 Anaphase-promoting com 97.7 0.00023 5E-09 73.1 9.8 93 265-358 22-115 (665)
364 PRK13616 lipoprotein LpqB; Pro 97.6 0.0063 1.4E-07 65.4 21.0 207 284-501 328-563 (591)
365 PF04841 Vps16_N: Vps16, N-ter 97.6 0.04 8.7E-07 56.8 25.6 188 328-530 62-272 (410)
366 PRK10115 protease 2; Provision 97.6 0.18 4E-06 55.7 33.8 238 266-511 129-399 (686)
367 PF14583 Pectate_lyase22: Olig 97.5 0.045 9.8E-07 54.6 23.6 241 291-538 16-303 (386)
368 PF08553 VID27: VID27 cytoplas 97.5 0.0024 5.2E-08 69.7 15.3 127 410-538 502-639 (794)
369 KOG1897 Damage-specific DNA bi 97.5 0.16 3.4E-06 55.7 28.3 272 264-543 584-894 (1096)
370 PF14655 RAB3GAP2_N: Rab3 GTPa 97.5 0.076 1.6E-06 54.2 24.6 88 268-357 6-117 (415)
371 smart00320 WD40 WD40 repeats. 97.5 0.00036 7.8E-09 44.1 5.4 37 255-291 4-40 (40)
372 PF05096 Glu_cyclase_2: Glutam 97.4 0.12 2.5E-06 49.1 24.8 184 306-497 45-251 (264)
373 COG3490 Uncharacterized protei 97.4 0.037 8E-07 52.1 19.8 231 268-505 72-347 (366)
374 COG3386 Gluconolactonase [Carb 97.4 0.063 1.4E-06 52.8 22.9 219 269-497 30-276 (307)
375 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.0088 1.9E-07 48.4 13.8 101 266-374 2-109 (111)
376 PRK13616 lipoprotein LpqB; Pro 97.4 0.023 4.9E-07 61.2 21.2 187 347-542 348-563 (591)
377 smart00320 WD40 WD40 repeats. 97.4 0.00059 1.3E-08 43.0 5.7 39 295-333 2-40 (40)
378 KOG3621 WD40 repeat-containing 97.4 0.0038 8.1E-08 65.3 13.9 137 304-441 32-179 (726)
379 PRK10115 protease 2; Provision 97.3 0.4 8.7E-06 53.0 30.6 200 306-513 127-353 (686)
380 KOG2395 Protein involved in va 97.3 0.0079 1.7E-07 61.0 15.0 129 407-538 351-492 (644)
381 KOG4499 Ca2+-binding protein R 97.2 0.078 1.7E-06 48.6 19.1 206 318-526 28-262 (310)
382 PHA02713 hypothetical protein; 97.2 0.044 9.5E-07 59.0 20.9 215 286-511 273-538 (557)
383 PF10647 Gmad1: Lipoprotein Lp 97.2 0.18 3.8E-06 48.4 23.0 185 350-536 25-227 (253)
384 KOG4441 Proteins containing BT 97.2 0.033 7.2E-07 59.9 19.7 231 272-511 282-551 (571)
385 PF14727 PHTB1_N: PTHB1 N-term 97.2 0.38 8.2E-06 49.3 28.5 260 274-543 36-356 (418)
386 KOG4640 Anaphase-promoting com 97.1 0.0022 4.7E-08 66.2 9.1 92 306-400 21-115 (665)
387 KOG4441 Proteins containing BT 97.1 0.033 7.2E-07 59.9 18.3 218 316-540 284-534 (571)
388 PF15390 DUF4613: Domain of un 97.1 0.1 2.2E-06 54.1 20.3 145 263-409 56-220 (671)
389 PF14870 PSII_BNR: Photosynthe 97.0 0.18 3.9E-06 49.4 21.2 203 249-458 89-301 (302)
390 COG3204 Uncharacterized protei 97.0 0.24 5.2E-06 47.2 20.9 191 259-451 81-302 (316)
391 KOG4499 Ca2+-binding protein R 97.0 0.11 2.4E-06 47.6 17.8 163 277-442 73-263 (310)
392 KOG2444 WD40 repeat protein [G 97.0 0.00092 2E-08 60.7 4.7 141 319-463 32-179 (238)
393 PF07995 GSDH: Glucose / Sorbo 97.0 0.47 1E-05 47.6 27.4 233 265-501 3-330 (331)
394 PF05096 Glu_cyclase_2: Glutam 97.0 0.36 7.8E-06 45.8 24.2 179 350-536 46-249 (264)
395 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.079 1.7E-06 43.0 14.9 100 351-456 2-109 (111)
396 PRK13684 Ycf48-like protein; P 96.9 0.57 1.2E-05 47.0 29.5 270 263-545 45-329 (334)
397 KOG2395 Protein involved in va 96.8 0.019 4.2E-07 58.3 12.1 142 316-461 344-500 (644)
398 COG5276 Uncharacterized conser 96.7 0.56 1.2E-05 44.7 28.2 270 264-545 87-367 (370)
399 COG3490 Uncharacterized protei 96.7 0.084 1.8E-06 49.8 15.1 155 381-537 58-245 (366)
400 KOG2079 Vacuolar assembly/sort 96.7 0.039 8.4E-07 60.7 14.7 101 274-378 98-202 (1206)
401 PF14870 PSII_BNR: Photosynthe 96.6 0.88 1.9E-05 44.6 27.8 268 263-544 16-301 (302)
402 PHA02713 hypothetical protein; 96.5 0.19 4E-06 54.3 18.9 202 328-539 273-523 (557)
403 COG3204 Uncharacterized protei 96.5 0.73 1.6E-05 44.0 20.1 160 301-462 81-264 (316)
404 PF02333 Phytase: Phytase; In 96.5 1.1 2.4E-05 45.0 22.6 187 274-463 67-292 (381)
405 KOG1897 Damage-specific DNA bi 96.5 1.9 4.2E-05 47.6 28.5 216 319-543 686-938 (1096)
406 TIGR03074 PQQ_membr_DH membran 96.4 1.5 3.2E-05 48.9 24.7 188 275-465 194-481 (764)
407 TIGR03118 PEPCTERM_chp_1 conse 96.3 1.1 2.3E-05 43.2 23.5 197 266-463 25-281 (336)
408 PF15390 DUF4613: Domain of un 96.2 0.29 6.3E-06 50.9 17.0 177 349-535 20-219 (671)
409 TIGR03074 PQQ_membr_DH membran 96.2 1.6 3.5E-05 48.6 24.3 146 363-511 262-482 (764)
410 PF14655 RAB3GAP2_N: Rab3 GTPa 96.2 0.35 7.6E-06 49.5 17.8 71 393-463 310-400 (415)
411 PRK13684 Ycf48-like protein; P 96.2 1.1 2.3E-05 45.0 21.0 150 305-460 172-330 (334)
412 PHA03098 kelch-like protein; P 96.2 0.26 5.7E-06 53.0 17.7 197 316-523 294-528 (534)
413 KOG3630 Nuclear pore complex, 96.1 0.056 1.2E-06 59.8 12.0 144 307-451 102-262 (1405)
414 KOG2444 WD40 repeat protein [G 96.1 0.013 2.7E-07 53.5 5.8 135 405-545 33-175 (238)
415 PF12894 Apc4_WD40: Anaphase-p 96.0 0.022 4.8E-07 38.6 5.5 34 263-297 11-44 (47)
416 PLN00033 photosystem II stabil 96.0 2.2 4.7E-05 43.7 34.8 146 395-544 243-396 (398)
417 PF05694 SBP56: 56kDa selenium 95.9 2.4 5.2E-05 43.1 25.2 220 316-536 86-392 (461)
418 KOG2079 Vacuolar assembly/sort 95.9 0.03 6.4E-07 61.6 8.4 96 401-499 98-198 (1206)
419 TIGR02604 Piru_Ver_Nterm putat 95.7 0.65 1.4E-05 47.3 17.2 145 391-537 14-203 (367)
420 PF07995 GSDH: Glucose / Sorbo 95.6 2.8 6.1E-05 41.9 24.7 231 307-542 3-330 (331)
421 PLN02153 epithiospecifier prot 95.6 2.1 4.6E-05 43.0 20.3 175 361-539 86-325 (341)
422 PHA03098 kelch-like protein; P 95.5 0.56 1.2E-05 50.5 16.9 183 274-463 294-513 (534)
423 KOG2377 Uncharacterized conser 95.5 1 2.2E-05 45.5 16.7 119 262-382 65-188 (657)
424 PHA02790 Kelch-like protein; P 95.3 0.86 1.9E-05 48.3 17.2 180 274-463 271-472 (480)
425 PF10214 Rrn6: RNA polymerase 95.3 6.4 0.00014 44.3 26.9 177 303-507 77-277 (765)
426 PF10647 Gmad1: Lipoprotein Lp 95.3 2.9 6.3E-05 40.0 23.0 140 307-451 25-184 (253)
427 TIGR02604 Piru_Ver_Nterm putat 95.2 1.1 2.5E-05 45.5 17.0 142 264-407 14-200 (367)
428 COG4257 Vgb Streptogramin lyas 95.1 3.2 7E-05 39.3 22.3 255 266-526 64-325 (353)
429 PF12894 Apc4_WD40: Anaphase-p 95.0 0.087 1.9E-06 35.7 5.6 31 305-335 11-41 (47)
430 PF12234 Rav1p_C: RAVE protein 94.8 1 2.3E-05 48.3 15.8 72 306-378 30-103 (631)
431 PF14781 BBS2_N: Ciliary BBSom 94.8 1.8 3.8E-05 36.5 13.6 117 310-428 3-133 (136)
432 PF03022 MRJP: Major royal jel 94.6 4.9 0.00011 39.3 21.1 164 372-535 35-253 (287)
433 PLN00033 photosystem II stabil 94.6 6.3 0.00014 40.4 25.8 147 351-503 241-396 (398)
434 PHA02790 Kelch-like protein; P 94.4 3.3 7.1E-05 43.9 18.7 186 316-511 271-475 (480)
435 TIGR03548 mutarot_permut cycli 94.3 6.2 0.00013 39.3 19.7 101 361-463 73-196 (323)
436 PF10168 Nup88: Nuclear pore c 94.2 3.4 7.4E-05 45.7 18.5 78 265-342 86-186 (717)
437 PF14781 BBS2_N: Ciliary BBSom 94.2 2.1 4.5E-05 36.0 12.8 111 396-511 4-130 (136)
438 COG5276 Uncharacterized conser 94.1 5.9 0.00013 38.0 24.5 251 242-505 108-368 (370)
439 COG4257 Vgb Streptogramin lyas 94.0 5.7 0.00012 37.7 20.1 212 307-532 63-290 (353)
440 PF12234 Rav1p_C: RAVE protein 93.9 3.1 6.7E-05 44.9 16.9 122 255-379 21-156 (631)
441 PF14761 HPS3_N: Hermansky-Pud 93.8 4.2 9.1E-05 37.3 15.1 139 318-460 29-213 (215)
442 COG3292 Predicted periplasmic 93.7 6.5 0.00014 41.1 17.9 267 264-543 165-443 (671)
443 KOG2280 Vacuolar assembly/sort 93.6 12 0.00027 40.5 20.2 175 284-463 63-248 (829)
444 PLN02193 nitrile-specifier pro 93.6 11 0.00024 39.8 20.6 191 316-513 175-417 (470)
445 COG3823 Glutamine cyclotransfe 93.6 3.2 6.9E-05 37.7 13.6 176 316-495 55-247 (262)
446 KOG1916 Nuclear protein, conta 93.5 0.051 1.1E-06 58.7 2.8 116 258-378 127-264 (1283)
447 COG1520 FOG: WD40-like repeat 93.4 10 0.00022 38.6 29.8 150 274-428 68-225 (370)
448 KOG2247 WD40 repeat-containing 93.3 0.0088 1.9E-07 60.2 -2.9 142 393-540 37-181 (615)
449 COG3823 Glutamine cyclotransfe 93.3 2.9 6.4E-05 37.9 12.9 169 362-535 57-247 (262)
450 COG5167 VID27 Protein involved 93.3 1.3 2.9E-05 45.3 12.0 142 316-461 478-632 (776)
451 COG5167 VID27 Protein involved 93.3 1.5 3.3E-05 44.9 12.4 135 401-538 478-624 (776)
452 KOG1916 Nuclear protein, conta 93.2 0.062 1.3E-06 58.1 2.9 195 284-511 110-328 (1283)
453 KOG2377 Uncharacterized conser 93.2 1.5 3.3E-05 44.3 12.2 103 431-535 65-171 (657)
454 PF10313 DUF2415: Uncharacteri 93.2 0.41 9E-06 31.5 5.6 31 264-294 1-34 (43)
455 KOG1898 Splicing factor 3b, su 93.2 18 0.00039 40.8 29.1 127 411-543 911-1044(1205)
456 PF14727 PHTB1_N: PTHB1 N-term 93.1 12 0.00026 38.5 27.1 142 317-460 37-203 (418)
457 KOG2247 WD40 repeat-containing 93.1 0.024 5.3E-07 57.1 -0.3 148 308-458 37-185 (615)
458 PF08728 CRT10: CRT10; InterP 93.0 4.8 0.0001 43.9 16.5 110 351-460 103-245 (717)
459 PF07569 Hira: TUP1-like enhan 92.8 0.85 1.8E-05 42.6 9.6 74 387-462 9-96 (219)
460 KOG2280 Vacuolar assembly/sort 92.8 3.9 8.5E-05 44.1 15.1 171 370-543 63-242 (829)
461 KOG3598 Thyroid hormone recept 92.7 0.081 1.8E-06 59.7 3.0 8 26-33 2039-2046(2220)
462 PF10168 Nup88: Nuclear pore c 92.6 20 0.00043 39.9 22.7 93 306-421 85-180 (717)
463 PF14761 HPS3_N: Hermansky-Pud 92.6 8.1 0.00018 35.5 15.1 57 393-451 20-78 (215)
464 KOG3630 Nuclear pore complex, 92.5 1.4 3.1E-05 49.3 12.0 141 392-535 102-261 (1405)
465 PF10433 MMS1_N: Mono-function 92.0 20 0.00042 38.3 21.8 226 314-544 219-473 (504)
466 PF07569 Hira: TUP1-like enhan 91.8 1.1 2.5E-05 41.7 9.2 61 484-545 18-93 (219)
467 PF07250 Glyoxal_oxid_N: Glyox 91.4 3.1 6.7E-05 39.4 11.6 129 414-542 48-194 (243)
468 KOG1983 Tomosyn and related SN 91.4 5.9 0.00013 45.7 16.0 228 265-510 37-268 (993)
469 PRK14131 N-acetylneuraminic ac 90.9 20 0.00044 36.5 18.9 39 500-538 314-353 (376)
470 TIGR03118 PEPCTERM_chp_1 conse 90.9 17 0.00036 35.4 19.9 195 349-545 23-277 (336)
471 PF13449 Phytase-like: Esteras 90.5 20 0.00043 35.7 17.6 143 391-534 20-231 (326)
472 PF10395 Utp8: Utp8 family; I 90.5 13 0.00028 40.3 16.2 165 263-429 129-314 (670)
473 COG1520 FOG: WD40-like repeat 90.5 22 0.00047 36.1 28.1 186 319-511 70-273 (370)
474 TIGR02276 beta_rpt_yvtn 40-res 90.3 1.3 2.8E-05 28.7 5.9 41 358-398 1-41 (42)
475 PF08801 Nucleoporin_N: Nup133 89.6 13 0.00029 38.5 15.8 31 432-462 189-220 (422)
476 PF10395 Utp8: Utp8 family; I 89.6 35 0.00076 37.1 23.5 123 386-511 125-264 (670)
477 PLN02193 nitrile-specifier pro 89.6 31 0.00066 36.5 27.2 173 361-538 176-387 (470)
478 PRK14131 N-acetylneuraminic ac 89.5 27 0.00058 35.6 20.0 14 372-385 190-203 (376)
479 PF13449 Phytase-like: Esteras 89.5 24 0.00052 35.2 17.3 142 306-449 20-231 (326)
480 KOG4460 Nuclear pore complex, 89.3 6.6 0.00014 40.6 12.3 26 350-376 105-130 (741)
481 TIGR03547 muta_rot_YjhT mutatr 89.2 26 0.00056 35.2 21.0 41 499-539 291-332 (346)
482 KOG1900 Nuclear pore complex, 89.0 4.1 8.8E-05 46.7 11.6 137 408-545 95-270 (1311)
483 PLN02153 epithiospecifier prot 88.9 27 0.00059 35.0 22.6 64 274-339 32-113 (341)
484 PF02333 Phytase: Phytase; In 88.5 30 0.00066 35.0 21.4 181 361-545 68-288 (381)
485 PF10313 DUF2415: Uncharacteri 88.5 2.1 4.5E-05 28.2 5.4 32 349-380 1-34 (43)
486 KOG1898 Splicing factor 3b, su 88.4 34 0.00073 38.8 17.7 170 329-506 855-1048(1205)
487 PF08801 Nucleoporin_N: Nup133 87.9 24 0.00052 36.6 16.3 29 478-506 191-219 (422)
488 PF08728 CRT10: CRT10; InterP 87.9 6.7 0.00015 42.8 12.1 104 274-378 113-245 (717)
489 KOG1520 Predicted alkaloid syn 87.6 6.6 0.00014 39.2 10.9 118 391-536 115-237 (376)
490 COG5290 IkappaB kinase complex 87.3 15 0.00034 40.0 13.9 93 394-490 250-350 (1243)
491 PF10433 MMS1_N: Mono-function 87.2 45 0.00097 35.5 29.0 246 272-527 219-503 (504)
492 PF12657 TFIIIC_delta: Transcr 86.9 3.3 7.1E-05 37.1 8.0 28 518-545 86-119 (173)
493 COG4590 ABC-type uncharacteriz 86.7 2.6 5.5E-05 42.7 7.5 163 298-463 213-388 (733)
494 KOG1900 Nuclear pore complex, 86.5 17 0.00037 42.0 14.5 157 347-507 77-273 (1311)
495 PF12768 Rax2: Cortical protei 86.0 14 0.0003 35.9 12.2 112 327-440 16-144 (281)
496 PF07250 Glyoxal_oxid_N: Glyox 85.6 21 0.00045 33.9 12.8 142 287-430 48-207 (243)
497 PRK13613 lipoprotein LpqB; Pro 85.2 62 0.0013 35.3 22.6 190 350-541 364-576 (599)
498 COG1770 PtrB Protease II [Amin 85.2 60 0.0013 35.1 24.5 218 308-528 131-371 (682)
499 TIGR03606 non_repeat_PQQ dehyd 84.9 40 0.00087 35.2 15.6 120 419-539 16-167 (454)
500 PF05935 Arylsulfotrans: Aryls 84.7 57 0.0012 34.5 17.3 156 274-434 114-315 (477)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-48 Score=362.41 Aligned_cols=302 Identities=24% Similarity=0.395 Sum_probs=273.1
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE-EEeccCCccEEEEEE
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRF 313 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~-~~l~~h~~~V~~l~~ 313 (545)
.++.|.++|+||..+.. +..+.++|...|.|++|+|||+.||+|+.||.|++||.++++.+ ..+.+|...|++++|
T Consensus 132 tGsGD~TvR~WD~~TeT---p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Law 208 (480)
T KOG0271|consen 132 TGSGDTTVRLWDLDTET---PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAW 208 (480)
T ss_pred ecCCCceEEeeccCCCC---cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEee
Confidence 45568899999998764 46788999999999999999999999999999999999988776 788999999999999
Q ss_pred cC-----CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe
Q 009059 314 SP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 388 (545)
Q Consensus 314 sp-----~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~ 388 (545)
.| ..++||+++.||.|+|||+..+. ++..+.+|+.+|+|+.|-- ..++++++.|++|++|+...|.+.+.++
T Consensus 209 ep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lk 285 (480)
T KOG0271|consen 209 EPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELK 285 (480)
T ss_pred cccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhc
Confidence 76 56799999999999999999766 4899999999999999974 5689999999999999999999998887
Q ss_pred ccCC-eeEEEEe-----------CCCC-------------------------EEEEEECCCeEEEEECCC-CEEEEEecC
Q 009059 389 CQSG-ATQMRFQ-----------PRLG-------------------------RILAAAIENYISILDVET-QVCRLKLQG 430 (545)
Q Consensus 389 ~~~~-v~~l~~s-----------p~~~-------------------------~l~~~~~dg~I~i~d~~~-~~~~~~~~~ 430 (545)
.+.. |+.++++ |.+. .+++++.|.++.+|+... .+++..+.+
T Consensus 286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg 365 (480)
T KOG0271|consen 286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG 365 (480)
T ss_pred ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc
Confidence 5543 6665544 3333 489999999999999865 458888999
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe
Q 009059 431 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 431 h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 509 (545)
|..-|+.+.|+||++|+|+++ |..|++||-+++ +.+..+.+|-..|+.++|+.|.+.|++++.|.++++||+++.+
T Consensus 366 Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 366 HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred hhhheeeEEECCCccEEEEeecccceeeeeCCCc---chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee
Confidence 999999999999999999999 999999999998 7788999999999999999999999999999999999999999
Q ss_pred EE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 510 TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 510 ~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+. .+.+|...|.++.|+|||..+++|+.|..+++|.
T Consensus 443 l~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 443 LKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 88 7889999999999999999999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.4e-47 Score=352.45 Aligned_cols=289 Identities=24% Similarity=0.380 Sum_probs=265.5
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 254 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
++-..+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..+..+.++|...|.|++|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCC----CCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCCEEEEE
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA 408 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~----~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~~~ 408 (545)
..+++...+.+.+|...|++++|.|- ...++++++.||.|+|||+..+.++..+.. ...|+|++|--+ ++++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySg 264 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSG 264 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEec
Confidence 99999888999999999999999763 234788999999999999999999988764 457999999877 899999
Q ss_pred ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEc-----------CCCC-------------------------EEEEEe-
Q 009059 409 AIENYISILDVETQVCRLKLQGHKNQVHSVCWN-----------TSGE-------------------------YLASVS- 451 (545)
Q Consensus 409 ~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~s-----------p~g~-------------------------~l~s~s- 451 (545)
+.|++|++|+...|.+...+++|...|+.++.+ |.++ .|++|+
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 999999999999999999999999999999876 2233 499999
Q ss_pred CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCC
Q 009059 452 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG 530 (545)
Q Consensus 452 dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~ 530 (545)
|.++.+|+..... +++..+.+|...|+.+.|+||++++++++.|..|++||.++++.+ .+.+|-+.|..++|+.|.+
T Consensus 345 d~tlflW~p~~~k--kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 345 DFTLFLWNPFKSK--KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred CceEEEecccccc--cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence 6699999976442 577788899999999999999999999999999999999999999 8889999999999999999
Q ss_pred EEEEEeCCCcEEEcC
Q 009059 531 MVASASHDKCVKIWK 545 (545)
Q Consensus 531 ~las~s~Dg~I~iWd 545 (545)
+|++|+.|.++++||
T Consensus 423 LlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWD 437 (480)
T ss_pred EEEEcCCCceEEEEE
Confidence 999999999999996
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.2e-45 Score=345.94 Aligned_cols=282 Identities=27% Similarity=0.434 Sum_probs=264.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC--CCEEEEEeCCCeEEEEECCC
Q 009059 259 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTEN 336 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~--~~~l~t~s~dg~I~vwd~~~ 336 (545)
-.+-+.+|..|.|+.|++.||||+.+|.++||+..+...+.+|.+|...|.++.|+|. +..||||+.||++++|++.+
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 3467789999999999999999999999999999999999999999999999999996 66899999999999999997
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEE
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
.. ++..+.+|...|..++|+|+|.+| .+++.|.+-++||++++..+...+ |..+|.+++|.++|..+++|+.|..-+
T Consensus 251 e~-~l~~l~gH~~RVs~VafHPsG~~L-~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~R 328 (459)
T KOG0272|consen 251 ET-PLQDLEGHLARVSRVAFHPSGKFL-GTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGR 328 (459)
T ss_pred Cc-chhhhhcchhhheeeeecCCCcee-eecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhh
Confidence 65 589999999999999999998655 599999999999999987766555 456799999999999999999999999
Q ss_pred EEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcC-CCCEEEE
Q 009059 416 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLV 493 (545)
Q Consensus 416 i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp-~~~~l~~ 493 (545)
|||++++.++..+.+|..+|.+++|+|+|..||+|+ |++++|||++.. ..++++..|.+-|+.+.|+| .|.+|++
T Consensus 329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSPQEGYFLVT 405 (459)
T ss_pred eeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhheEecccCCeEEEE
Confidence 999999999999999999999999999999999999 999999999887 66899999999999999998 7889999
Q ss_pred EEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 494 IGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 494 ~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++.|++++||...+..++ .+.+|++.|.++++++|+.+++|++.|.+||+|.
T Consensus 406 asyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 406 ASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999998 8889999999999999999999999999999994
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.8e-42 Score=311.93 Aligned_cols=291 Identities=18% Similarity=0.331 Sum_probs=263.4
Q ss_pred eeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEE
Q 009059 252 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 331 (545)
Q Consensus 252 ~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~v 331 (545)
.++..++|++|.++|.++.|++|.++|++++.||++.|||.-+...+..+.-....|..++|+|.++++|+|+-|+.+.|
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 44556899999999999999999999999999999999999998888888888999999999999999999999999999
Q ss_pred EECCCC--C---eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeC-CCCE
Q 009059 332 WDTENP--D---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQP-RLGR 404 (545)
Q Consensus 332 wd~~~~--~---~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp-~~~~ 404 (545)
|++.+. . ...+.+.+|++.+.|+.|.+++ .++ +++.|.++.+||+++++.+..|..+ +.|.++.+.| +++.
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~il-T~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HIL-TGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCCC-ceE-ecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 999854 2 2346789999999999999863 455 8999999999999999999998754 5699999999 8999
Q ss_pred EEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEE
Q 009059 405 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 483 (545)
Q Consensus 405 l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~ 483 (545)
+++|+.|+..++||++.+.++..|.+|...|++++|.|+|.-+++|+ |++.++||++.... ..++.-.....+|++++
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~~gitSv~ 280 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-LAVYSHDSIICGITSVA 280 (343)
T ss_pred EEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-EeeeccCcccCCceeEE
Confidence 99999999999999999999999999999999999999999999999 88999999998743 22233333456799999
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 484 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 484 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|+..|++|++|..|.++.+||.-.++.+ .+.+|++.|.+|..+|||.-|+||+.|.++|||.
T Consensus 281 FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 281 FSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999888877 8889999999999999999999999999999994
No 5
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.8e-40 Score=299.24 Aligned_cols=288 Identities=23% Similarity=0.434 Sum_probs=264.1
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc-CCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~-~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
++..+.+|++.|+.+.|+|+|.+||+|+.|..|.||++ ...+-...+++|.++|..+.|.+|++.|++++.|.+|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 35667899999999999999999999999999999995 44556678899999999999999999999999999999999
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
+++++. ++.+++|..-|+.+.-..-|..++++++.|+++++||+++.++++++.....++++.|...+..+++|+-|+.
T Consensus 119 ~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 999886 8999999999999997777888999999999999999999999999988889999999999999999999999
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCc-ceEEEEeeCC----CceEEEEEcCC
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTG----NKFHSCVFHPT 487 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~-~~i~~~~~~~----~~v~~~~~sp~ 487 (545)
|++||++.....+.+.+|.+.|+.+..+++|.++.+-+ |.++++||++..... .++..+.++. .....|+|+|+
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 99999999999999999999999999999999999999 999999999875432 4576666553 33567899999
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 488 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 488 ~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
+.++-+|+.|..+++||......+ .+.+|.+.|++++|+|...+|.+++.|.+|++
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999999999999999999987766 89999999999999999999999999999976
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-40 Score=314.12 Aligned_cols=261 Identities=25% Similarity=0.359 Sum_probs=243.6
Q ss_pred CcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEE
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 313 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spd--g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~ 313 (545)
.+++...++|...++ ..+.+|++|...|.++.|+|. +.-||+|+.||+|++|++++-.++..+.+|...|..++|
T Consensus 193 ~swsG~~kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~Vaf 269 (459)
T KOG0272|consen 193 GSWSGLVKVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAF 269 (459)
T ss_pred eecCCceeEeecCCc---ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeee
Confidence 445678888988777 467899999999999999996 668999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CC
Q 009059 314 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SG 392 (545)
Q Consensus 314 sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~ 392 (545)
+|+|++|+|++.|.+-++||++++.. +....||...|.+++|+++| .++++|+.|..-+|||+++++++..+..+ ..
T Consensus 270 HPsG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~ 347 (459)
T KOG0272|consen 270 HPSGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKE 347 (459)
T ss_pred cCCCceeeecccccchhhcccccchh-hHhhcccccccceeEecCCC-ceeeccCccchhheeecccCcEEEEecccccc
Confidence 99999999999999999999998775 77788999999999999997 57889999999999999999999988754 56
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcC-CCCEEEEEe-CCcEEEEEcCCCCCcceEE
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp-~g~~l~s~s-dg~I~vwd~~~~~~~~~i~ 470 (545)
|..+.|+|+|-.+++|+.|++++|||++....+..+.+|..-|+.++|+| .|.+|++++ |++++||..++. .++.
T Consensus 348 I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---~~~k 424 (459)
T KOG0272|consen 348 ILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---SPLK 424 (459)
T ss_pred eeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc---ccch
Confidence 99999999999999999999999999999999999999999999999998 789999999 999999999887 7889
Q ss_pred EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 471 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
.+.+|.+.|.++.+++++.+|++++.|.++++|.
T Consensus 425 sLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 425 SLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999999995
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-38 Score=285.12 Aligned_cols=284 Identities=21% Similarity=0.363 Sum_probs=245.1
Q ss_pred EEEEeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcC-----CCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 009059 254 TEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE-----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spd-g~~latg~~dg~I~lwd~~-----~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg 327 (545)
....++++|++.|+.++..+. ...|++++.|.++.+|++. .|..++.+.+|...|..+..++||++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 345789999999999999986 5688999999999999874 5778899999999999999999999999999999
Q ss_pred eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec---cCCeeEEEEeCC--C
Q 009059 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPR--L 402 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~---~~~v~~l~~sp~--~ 402 (545)
++++||+.+++ ..+.|.+|...|.+++|+++...++ +|+.|.+|++|++... +..++.. ..-|.|++|+|+ .
T Consensus 86 ~lrlWDl~~g~-~t~~f~GH~~dVlsva~s~dn~qiv-SGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~ 162 (315)
T KOG0279|consen 86 TLRLWDLATGE-STRRFVGHTKDVLSVAFSTDNRQIV-SGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESN 162 (315)
T ss_pred eEEEEEecCCc-EEEEEEecCCceEEEEecCCCceee-cCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCC
Confidence 99999999885 5899999999999999999976555 9999999999999854 4444432 234999999998 6
Q ss_pred CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEE
Q 009059 403 GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 481 (545)
Q Consensus 403 ~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~ 481 (545)
..|+.++.|++|++||+++.+....+.+|.+.++.++++|||.+.++|+ ||.+.+||++.+ ++++.+. +...|.+
T Consensus 163 p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl~-a~~~v~s 238 (315)
T KOG0279|consen 163 PIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSLE-AFDIVNS 238 (315)
T ss_pred cEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEecc-CCCeEee
Confidence 7888999999999999999999999999999999999999999999999 999999999887 5566554 6789999
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Eec----cC-----CCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 482 CVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS----AH-----DKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 482 ~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~----~h-----~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++|+|+...|+.+ .+..|+|||+.++.++ .+. +. .....+++|++||..|.+|-.|+.|++|.
T Consensus 239 l~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 239 LCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 9999998755554 4456999999998876 221 22 23456789999999999999999999994
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.7e-38 Score=280.01 Aligned_cols=268 Identities=19% Similarity=0.386 Sum_probs=243.6
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eeeEeccCcccEEEE
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSL 354 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~-~~~~~~~h~~~V~~l 354 (545)
-+||++++|.+|++|...+|.+..++......|+.+...|+++.||+++. -.||+||+++... ++.+|.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 47999999999999999999999999988899999999999999999865 5799999998765 789999999999999
Q ss_pred EEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC-CCC
Q 009059 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HKN 433 (545)
Q Consensus 355 ~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-h~~ 433 (545)
.|..+|.. +++|++||+++|||++...+.+.+.+..+|+++..+|+...|+++..+|.|++||+.+..+...+.. ...
T Consensus 90 gF~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGRW-MYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCeE-EEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 99999764 5599999999999999999999999999999999999999999999999999999998877665543 456
Q ss_pred CEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC---CcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe
Q 009059 434 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~---~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 509 (545)
.|.++...|||.+|+.+. .|..++|++-... ....+..+..|...+..|.++|++++|++++.|.+++||+.++.-
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 899999999999999998 8899999997643 345677788999999999999999999999999999999999872
Q ss_pred EE--EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 510 TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 510 ~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.. .+.+|...++.++||.|+.||+||+.|+.+++|+
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 22 7789999999999999999999999999999997
No 9
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-39 Score=300.77 Aligned_cols=292 Identities=26% Similarity=0.462 Sum_probs=271.8
Q ss_pred ceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeE
Q 009059 250 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 329 (545)
Q Consensus 250 ~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I 329 (545)
..++.+...+.+|..+|+.+-|.|+-..+++++.|++|++||..++++...+++|.+.|.+|+|+..|++|++++.|-.+
T Consensus 95 ipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 95 IPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred CCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence 34455677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC-eeEEEEeCCCCEEEEE
Q 009059 330 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAA 408 (545)
Q Consensus 330 ~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~~~ 408 (545)
++||..+...+++...+|...|.+++|-|.|.+++ +|+.|.+|+.|++.++.++.++..+.. +.-+..+.||..++++
T Consensus 175 ~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~il-S~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHIL-SCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred hheeHHHHHHHHHHhcCcccceeeEEEEecCCeee-ecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEec
Confidence 99999976667888999999999999999986555 999999999999999999999986655 7888999999889999
Q ss_pred ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCC---------------CCEEEEEe-CCcEEEEEcCCCCCcceEEEE
Q 009059 409 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS---------------GEYLASVS-DELVRVWSIGSGSKGECIHEL 472 (545)
Q Consensus 409 ~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~---------------g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~ 472 (545)
+.|.+|++|-+.++.+...+..|.-+|-|++|.|. +.++++++ |++|++||+.++ .|+.++
T Consensus 254 s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL 330 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTL 330 (406)
T ss_pred CCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEE
Confidence 99999999999999999999999999999999762 35899999 999999999998 999999
Q ss_pred eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 473 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 473 ~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+|.+.|..++|+|.|+||+++..|+++++||+++++++ .+.+|+..|++++|+.+..+++||+-|.++++|.
T Consensus 331 ~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 331 VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 999999999999999999999999999999999999998 7889999999999999999999999999999994
No 10
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.4e-37 Score=319.09 Aligned_cols=286 Identities=30% Similarity=0.533 Sum_probs=256.5
Q ss_pred EEeecC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe--EEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 009059 256 FQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 332 (545)
Q Consensus 256 ~~~l~~-H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~--~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vw 332 (545)
...+.. |...|.|+.|+++|++|++++.|+.+++|+....+ ....+.+|...|.+++|+|+++++++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 444544 48899999999999999999999999999998877 777888999999999999999999999999999999
Q ss_pred ECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC-CeeEEEEeCCCCEEEEEECC
Q 009059 333 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 333 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~~~~~d 411 (545)
|+......++++.+|...|++++|+|++ .++++|+.|++|++||+++++++..+..+. .++.++|++++..|++++.|
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 9966656789999999999999999998 788899999999999999999999998654 79999999999999999999
Q ss_pred CeEEEEECCCCE--EEEEecCCCCC--EEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCc---eEEEE
Q 009059 412 NYISILDVETQV--CRLKLQGHKNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSCV 483 (545)
Q Consensus 412 g~I~i~d~~~~~--~~~~~~~h~~~--I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~---v~~~~ 483 (545)
+.|++||+.++. +...+.++... +++++|+|++.+|+++. |+.+++||+..+ .++..+.+|... +.+..
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCcceeEeccc
Confidence 999999999998 56777776655 99999999999999999 779999999887 667777777664 44455
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccC-CCCeeEEEEeCCCCEEEEEe--CCCcEEEcC
Q 009059 484 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASAS--HDKCVKIWK 545 (545)
Q Consensus 484 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h-~~~V~~l~~spd~~~las~s--~Dg~I~iWd 545 (545)
.++.+.++++++.|+.|++||+.++..+ .+.+| ...+..+.++|..+++++++ .|+.|++|+
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 6789999999999999999999987776 78889 89999999999999999998 789999995
No 11
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.2e-38 Score=292.44 Aligned_cols=288 Identities=21% Similarity=0.390 Sum_probs=263.8
Q ss_pred eeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEE
Q 009059 252 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 331 (545)
Q Consensus 252 ~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~v 331 (545)
.++..+.+.+|.+.|.|+++.|...+|++|+.|++|+|||+.++++..++.+|...|..+++++-..||++++.|+.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEEC
Q 009059 332 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI 410 (545)
Q Consensus 332 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~ 410 (545)
||++..+. ++.+.+|-..|+|++.+|.- .++++|+.|.++++||+++...+..+. +...|..+.+.|-...+++++.
T Consensus 220 wDLe~nkv-IR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 220 WDLEYNKV-IRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred Eechhhhh-HHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 99998876 99999999999999999985 566699999999999999999999988 5567999999998899999999
Q ss_pred CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE
Q 009059 411 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 411 dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~ 490 (545)
|++|++||++.++....+..|...|.+++.+|....+++++-+.|+-|++..+ ..+..+.+|...|.++....|+-
T Consensus 298 D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g---~f~~nlsgh~~iintl~~nsD~v- 373 (460)
T KOG0285|consen 298 DSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---EFLQNLSGHNAIINTLSVNSDGV- 373 (460)
T ss_pred CceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc---chhhccccccceeeeeeeccCce-
Confidence 99999999999999999999999999999999999999999778999999887 66777889999999999988874
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEec---------cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 491 LLVIGCYETLELWNMTENKTLTLS---------AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 491 l~~~~~dg~I~iwd~~~~~~~~~~---------~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+++|+.+|.|.+||.+++-..... ..+..|.+.+|...+..|++|..|.+|++|+
T Consensus 374 ~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred EEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 888999999999999988655211 2356799999999999999999999999995
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3e-37 Score=273.32 Aligned_cols=283 Identities=23% Similarity=0.339 Sum_probs=246.1
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe--EEEEeccCCccEEEEE
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVR 312 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~--~~~~l~~h~~~V~~l~ 312 (545)
..+.|.++|+|+..+|.. .++++...+.|+.+.+.||+++||+++. -.|++||+.++. ++.++++|...|+.+.
T Consensus 15 sA~YDhTIRfWqa~tG~C---~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVg 90 (311)
T KOG0315|consen 15 SAGYDHTIRFWQALTGIC---SRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVG 90 (311)
T ss_pred eccCcceeeeeehhcCeE---EEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEE
Confidence 345678999999999975 5556667778999999999999999875 689999998765 5789999999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec--c
Q 009059 313 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--Q 390 (545)
Q Consensus 313 ~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~--~ 390 (545)
|..+|+++++|++||+++|||++.... .+.+. |..+|+++..+|+...|| +|+.+|.|++||+.+..+...+.. .
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR~~~~-qR~~~-~~spVn~vvlhpnQteLi-s~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLRSLSC-QRNYQ-HNSPVNTVVLHPNQTELI-SGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EeecCeEEEecCCCceEEEEeccCccc-chhcc-CCCCcceEEecCCcceEE-eecCCCcEEEEEccCCccccccCCCCC
Confidence 999999999999999999999998543 44444 789999999999977666 999999999999998877665543 3
Q ss_pred CCeeEEEEeCCCCEEEEEECCCeEEEEECCCC------EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q 009059 391 SGATQMRFQPRLGRILAAAIENYISILDVETQ------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 463 (545)
Q Consensus 391 ~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~------~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~ 463 (545)
..+.++.+.|+|..++++...|..++|++-+. +++.+++.|.+.+..+.+||++++|++++ |.+++||+.++.
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 45899999999999999999999999998753 45677889999999999999999999999 999999999876
Q ss_pred CCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEe
Q 009059 464 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 526 (545)
Q Consensus 464 ~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s 526 (545)
.+.-..+.+|...++.|+|+.++.||++++.|+.+++||+..++.+ ...+|.....|++..
T Consensus 248 --~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 248 --FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred --eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 3455567889999999999999999999999999999999999887 777888887777754
No 13
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.5e-36 Score=292.27 Aligned_cols=284 Identities=32% Similarity=0.538 Sum_probs=254.4
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 009059 257 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 336 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~ 336 (545)
+.+++|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+..+.|++++++|++++.||.|++|++.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 46779999999999999999999999999999999999888888899999999999999999999999999999999997
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEE
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
... +..+..|...+.++.|++++ .++++++.++.|++||+.+++....+. +...+.++.|+|++..+++++.++.|+
T Consensus 83 ~~~-~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 GEC-VRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred ccc-eEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 654 67778899999999999984 577677789999999999888887776 445799999999977777777799999
Q ss_pred EEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEE
Q 009059 416 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 494 (545)
Q Consensus 416 i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~ 494 (545)
+||+++++.+..+..|...|.+++|+|+++.+++++ ++.|++||+..+ ..+..+..+...+.++.|++++.+++++
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 999999988888888999999999999998888888 999999999876 5666666788899999999998877777
Q ss_pred EcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 495 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 495 ~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+.++.|++||+.+++.. .+..|...|.+++|++++++|++++.||.|++||
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77999999999987776 6668999999999999999999999999999997
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.9e-39 Score=300.68 Aligned_cols=277 Identities=21% Similarity=0.433 Sum_probs=247.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 342 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~ 342 (545)
+..|..+.|.|+|+.|++|+..|.+.||+..+......+..|..+|.++.|++++.++++|+.+|.|++|+..-.. ++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--Vk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--VK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--hH
Confidence 4569999999999999999999999999997777777889999999999999999999999999999999987443 44
Q ss_pred EeccC-cccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECCCeEEEEECC
Q 009059 343 TFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVE 420 (545)
Q Consensus 343 ~~~~h-~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~ 420 (545)
.+..| ...|.+++|+|+. ..|++|+.||+|+|||....+....+..+ -.|.++.|+|..+.+++++.|+.|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 44544 4899999999975 55669999999999999988877777644 459999999999999999999999999999
Q ss_pred CCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC-CEEEEEEcCC
Q 009059 421 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYE 498 (545)
Q Consensus 421 ~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg 498 (545)
++.++.++.+|+..|..+.|++++.+|++++ |..+++||+++. +.+..+.+|...++++.|+|-. ..|.+|+.||
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCCC
Confidence 9999999999999999999999999999999 999999999865 6677888999999999999965 4677888999
Q ss_pred eEEEEeCCCCeEE--EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 499 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 499 ~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.|..|.+...+.+ .-.+|...|++++|+|-|.+|++|+.|.++++|-
T Consensus 330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999866655 4458999999999999999999999999999993
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-36 Score=272.43 Aligned_cols=267 Identities=15% Similarity=0.260 Sum_probs=229.1
Q ss_pred CCcccceeeeeecCCc--eeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEE
Q 009059 235 ADPRDRVGRSAEVGKG--FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 312 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~--~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~ 312 (545)
...+|+.+-+|+.... ..-..++.|.||...|..+..++||.+.++++.|+++++||+.+++....|.+|...|.+++
T Consensus 33 sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva 112 (315)
T KOG0279|consen 33 SASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVA 112 (315)
T ss_pred EcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEE
Confidence 4567788888876543 22345788999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCeeeeEec-cCcccEEEEEEeCCC-CcEEEEEcCCCcEEEEECCCCceeeEEecc
Q 009059 313 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 390 (545)
Q Consensus 313 ~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~-~h~~~V~~l~~~p~~-~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~ 390 (545)
|++|.+.+++|+.|.+|++|++..... ..... .+.+.|.|+.|+|+. +.++++++.|++|++||+++.+....+..+
T Consensus 113 ~s~dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh 191 (315)
T KOG0279|consen 113 FSTDNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH 191 (315)
T ss_pred ecCCCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccc
Confidence 999999999999999999999985332 33222 237899999999985 567779999999999999998888777644
Q ss_pred -CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceE
Q 009059 391 -SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI 469 (545)
Q Consensus 391 -~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i 469 (545)
+.++.++++|||..+++|+.||.+.+||++.++.+..+. |...|.+++|+|+..+|+.+.+..|+|||+.+. .++
T Consensus 192 ~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~---~~v 267 (315)
T KOG0279|consen 192 SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESK---AVV 267 (315)
T ss_pred cccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccch---hhh
Confidence 458999999999999999999999999999999988776 789999999999999998888888999999887 444
Q ss_pred EEEee---------CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 470 HELSC---------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 470 ~~~~~---------~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
.+++. ......+++|+++|..|+++..|+.|++|.+.
T Consensus 268 ~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 268 EELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 43331 13345788999999999999999999999874
No 16
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-35 Score=288.35 Aligned_cols=300 Identities=20% Similarity=0.322 Sum_probs=251.8
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec---cCCccEEEEEEcC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSP 315 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~---~h~~~V~~l~~sp 315 (545)
|..+..+ .|.+|+.-.+++.|..-|.|+.|+|||+++|+++.||+|.|||-.+++.+..+. +|.+.|.+|+|+|
T Consensus 169 Dn~v~ff---eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP 245 (603)
T KOG0318|consen 169 DNTVAFF---EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP 245 (603)
T ss_pred CCeEEEe---eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC
Confidence 3444444 377888889999999999999999999999999999999999999999999997 8999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCe------------------------------------------eeeEeccCcccEEE
Q 009059 316 SLSRLATSSADRTVRVWDTENPDY------------------------------------------SLRTFTGHSTTVMS 353 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~------------------------------------------~~~~~~~h~~~V~~ 353 (545)
|+..|+|++.|.+++|||+.+.+. .+..+.+|...|++
T Consensus 246 Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITa 325 (603)
T KOG0318|consen 246 DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITA 325 (603)
T ss_pred CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeE
Confidence 999999999999999999985432 12345679999999
Q ss_pred EEEeCCCCcEEEEEcCCCcEEEEECCCCceee-------------------------------EEe--------------
Q 009059 354 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-------------------------------VFK-------------- 388 (545)
Q Consensus 354 l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~-------------------------------~~~-------------- 388 (545)
+..++++.+ +++|+.||.|.-|++.++..-+ .+.
T Consensus 326 Ltv~~d~~~-i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l 404 (603)
T KOG0318|consen 326 LTVSPDGKT-IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKL 404 (603)
T ss_pred EEEcCCCCE-EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeec
Confidence 999999854 5599999999999987543110 000
Q ss_pred -------------------------------------ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCE--EEEEec
Q 009059 389 -------------------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQ 429 (545)
Q Consensus 389 -------------------------------------~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~--~~~~~~ 429 (545)
..-...+++++|++..+++|+.|+.|+||.+.... ....+.
T Consensus 405 g~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~ 484 (603)
T KOG0318|consen 405 GSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL 484 (603)
T ss_pred CCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeee
Confidence 00012368899999999999999999999998754 344566
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 430 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 430 ~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
.|.++|++++++||+.||+++. .+.+.+||+.+... ......-|...|.+++|+|+..++++|+-|-.|.||+++..
T Consensus 485 ~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 485 EHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred cccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence 7999999999999999999999 89999999988643 44455668999999999999999999999999999999765
Q ss_pred eEE--EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 509 KTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 509 ~~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
... ...+|...|+.+.|- |...|++.+.|..||+|.
T Consensus 563 ~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 563 AKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWN 600 (603)
T ss_pred hhheEeccccccCceeEEEe-cCceEEeccCcceeEEec
Confidence 433 455899999999996 566899999999999995
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-36 Score=291.86 Aligned_cols=282 Identities=25% Similarity=0.456 Sum_probs=250.4
Q ss_pred EEeecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCC--C--eEEEEec----------cCCccEEEEEEcCCCCEE
Q 009059 256 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTES--F--TVKSTLE----------EHTQWITDVRFSPSLSRL 320 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~-~latg~~dg~I~lwd~~~--~--~~~~~l~----------~h~~~V~~l~~sp~~~~l 320 (545)
++.++ |+.+|.+++|+|-.. +|++|+.|-..++|++.. . .....++ .....|++++|+.+|..|
T Consensus 172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 45555 999999999999655 899999999999999864 1 1111111 123579999999999999
Q ss_pred EEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCe-eEEEEe
Q 009059 321 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRFQ 399 (545)
Q Consensus 321 ~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v-~~l~~s 399 (545)
|+|+.||.+++|+.... .+.++..|+++|.++.|+..|.+++ +++.|+++.+||..+++....+..+... ..+.|.
T Consensus 251 atG~~~G~~riw~~~G~--l~~tl~~HkgPI~slKWnk~G~yil-S~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKDGN--LISTLGQHKGPIFSLKWNKKGTYIL-SGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ 327 (524)
T ss_pred EEeecCcEEEEEecCch--hhhhhhccCCceEEEEEcCCCCEEE-eccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence 99999999999998743 3788999999999999999987666 9999999999999999999988877766 779998
Q ss_pred CCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCc
Q 009059 400 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 478 (545)
Q Consensus 400 p~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~ 478 (545)
.+ ..+++.+.|+.|+|+-+....++.++.+|.++|.++.|+|.|.+|++++ |++++||+.... .+.+.+..|...
T Consensus 328 ~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~Hske 403 (524)
T KOG0273|consen 328 SN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAHSKE 403 (524)
T ss_pred cC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhhhhccc
Confidence 77 7899999999999999999999999999999999999999999999999 889999998766 788889999999
Q ss_pred eEEEEEcCCCC---------EEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 479 FHSCVFHPTFP---------SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 479 v~~~~~sp~~~---------~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|..+.|+|.+. .+++++.|++|++||+..+.++ .+..|..+|.+++|+|+|+|||+|+.||.|.||+
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 99999999764 5899999999999999999999 7889999999999999999999999999999995
No 18
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-35 Score=285.50 Aligned_cols=304 Identities=21% Similarity=0.379 Sum_probs=263.0
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEE
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 313 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~-~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~ 313 (545)
.++++++++++-+++|... ..+.||...|++|+|-|... .++||+.|+.|.+|+-..++...++..|..-|.|++|
T Consensus 122 GEGrerfg~~F~~DSG~Sv---Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRy 198 (603)
T KOG0318|consen 122 GEGRERFGHVFLWDSGNSV---GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRY 198 (603)
T ss_pred ecCccceeEEEEecCCCcc---ceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEE
Confidence 4566778888888888754 45779999999999999766 5999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeeEec---cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc
Q 009059 314 SPSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 390 (545)
Q Consensus 314 sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~---~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~ 390 (545)
+|||.+|++++.||+|.+||-.+++. +..+. +|.+.|+++.|+||+..++ +++.|.++++||+.+.++++++...
T Consensus 199 sPDG~~Fat~gsDgki~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~ 276 (603)
T KOG0318|consen 199 SPDGSRFATAGSDGKIYIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMG 276 (603)
T ss_pred CCCCCeEEEecCCccEEEEcCCCccE-EEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecC
Confidence 99999999999999999999998875 66666 8999999999999987766 8999999999999999999999876
Q ss_pred CCe----eEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC
Q 009059 391 SGA----TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 391 ~~v----~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~ 465 (545)
..+ ..+.|. +..|++.+.+|.|.+++......+..+.+|...|+++..++++++|++|+ ||.|.-|+..++..
T Consensus 277 ~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 277 STVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred CchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc
Confidence 653 234444 57899999999999999999999999999999999999999999999999 99999999865422
Q ss_pred cce--------EE-------------------------------------------------------------------
Q 009059 466 GEC--------IH------------------------------------------------------------------- 470 (545)
Q Consensus 466 ~~~--------i~------------------------------------------------------------------- 470 (545)
... +.
T Consensus 355 ~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~ 434 (603)
T KOG0318|consen 355 DRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQ 434 (603)
T ss_pred cccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecC
Confidence 110 00
Q ss_pred -----------------------------------------------EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEE
Q 009059 471 -----------------------------------------------ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 503 (545)
Q Consensus 471 -----------------------------------------------~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iw 503 (545)
....|..+|++++++|++.+|+++...+.+.+|
T Consensus 435 ~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~y 514 (603)
T KOG0318|consen 435 TKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLY 514 (603)
T ss_pred CcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEE
Confidence 112345678888888999888888888888899
Q ss_pred eCCCCeEE--EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 504 NMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 504 d~~~~~~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|+.+.+.. .+.-|.+.|.+++|+|+..+||||+-|-.|.||+
T Consensus 515 d~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 515 DVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred EcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence 98888776 4456999999999999999999999999999994
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.9e-36 Score=286.22 Aligned_cols=276 Identities=20% Similarity=0.329 Sum_probs=252.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 342 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~ 342 (545)
+..|++++|+.+|.+||+|+.||.++||+. +|.++.++..|.++|.+|.|+.+|.||++++.|+++.+||..++.. ..
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-~q 312 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-KQ 312 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-EE
Confidence 367999999999999999999999999995 5788899999999999999999999999999999999999988775 67
Q ss_pred EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC
Q 009059 343 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 421 (545)
Q Consensus 343 ~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~ 421 (545)
.+..|..+-..+.|-.+ .-|++++.|+.|+++.+....++.++. |++.|.++.|+|.+..|++++.|++++||....
T Consensus 313 ~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred eeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 78888888788999765 346689999999999999988888776 556799999999999999999999999999999
Q ss_pred CEEEEEecCCCCCEEEEEEcCCC---------CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEE
Q 009059 422 QVCRLKLQGHKNQVHSVCWNTSG---------EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 491 (545)
Q Consensus 422 ~~~~~~~~~h~~~I~~l~~sp~g---------~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l 491 (545)
......+.+|...|+.+.|+|.| ..+++++ |++|++||+..+ .+++.+..|..+|++++|+|+++++
T Consensus 391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEE
Confidence 99999999999999999999965 3566666 999999999888 8999999999999999999999999
Q ss_pred EEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 492 LVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 492 ~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++|+.||.|.+|++.+++.+.-....+.|..++|+.+|.+|..+-.||.+++-|
T Consensus 468 AsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 468 ASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred EecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 999999999999999999997777788899999999999999999999988754
No 20
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.3e-37 Score=296.47 Aligned_cols=290 Identities=20% Similarity=0.338 Sum_probs=253.7
Q ss_pred EEEEeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC-CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEE
Q 009059 254 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 331 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~-~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~v 331 (545)
+.+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 35788999999999999999 899999999999999999976 8999999999999999999999999999999999999
Q ss_pred EECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEEC
Q 009059 332 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAI 410 (545)
Q Consensus 332 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~ 410 (545)
||++++.+ +..+. ....++|+.|+|++.+++++|+.|+.|+.||+++++.+..+..+ +.+..+.|-+++.++++++.
T Consensus 285 wDtETG~~-~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 285 WDTETGQV-LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eccccceE-EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999886 55554 34578999999999888889999999999999999998887644 56999999999999999999
Q ss_pred CCeEEEEECCCCEEEEEec-CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC--CceEEEEEcC
Q 009059 411 ENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHP 486 (545)
Q Consensus 411 dg~I~i~d~~~~~~~~~~~-~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~--~~v~~~~~sp 486 (545)
|+.++||+.+....+.... .+.-...|+..+|++.++++-+ |+.|.+|.+...-....-..+.+|. +.-..|.|||
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 9999999999887665433 2344677899999999999988 9999999976543333334455554 3456678999
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCC-CEEEEEeCCCcEEEcC
Q 009059 487 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 545 (545)
Q Consensus 487 ~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~-~~las~s~Dg~I~iWd 545 (545)
||.+|++|..+|.+.+||.++-+++ .+.+|...+..+.|+|.. ..|||++.||.|++||
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999988 888999999999999976 5899999999999997
No 21
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-34 Score=260.43 Aligned_cols=283 Identities=24% Similarity=0.445 Sum_probs=239.7
Q ss_pred eEEEEeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCC---CeEEEEe-ccCCccEEEEEEcCCCCEEEEEeCCC
Q 009059 253 FTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES---FTVKSTL-EEHTQWITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 253 ~~~~~~l~~H~~~V~~l~~spd-g~~latg~~dg~I~lwd~~~---~~~~~~l-~~h~~~V~~l~~sp~~~~l~t~s~dg 327 (545)
+..++.+.+|.++|..++|+|- |..||+|+.|+.|++|+... ..++..+ .+|+..|..++|+|.|++|++++.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 3457889999999999999997 88999999999999999884 4555555 57999999999999999999999999
Q ss_pred eEEEEECCCCC-eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC---ceeeEEe-ccCCeeEEEEeCCC
Q 009059 328 TVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFK-CQSGATQMRFQPRL 402 (545)
Q Consensus 328 ~I~vwd~~~~~-~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~---~~~~~~~-~~~~v~~l~~sp~~ 402 (545)
++.||.-..+. .++.++.||..+|.+++|+++| .+||+|+.|+.|.+|.+..+ ++...+. |...|..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 99999876544 3577899999999999999997 56779999999999999754 3455554 34568999999999
Q ss_pred CEEEEEECCCeEEEEECC---CCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCc
Q 009059 403 GRILAAAIENYISILDVE---TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 478 (545)
Q Consensus 403 ~~l~~~~~dg~I~i~d~~---~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~ 478 (545)
..|++++.|++|++|+-. ...+..++.+|...|.+++|++.|..|++++ |++|+||...+. .-..|...
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~ 235 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRA 235 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccc
Confidence 999999999999999876 3478999999999999999999999999999 889999986543 11236678
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEeCCCC------eEE--EeccCCCCeeEEEEeCC-CCEEEEEeCCCcEEEcC
Q 009059 479 FHSCVFHPTFPSLLVIGCYETLELWNMTEN------KTL--TLSAHDKLVSSLAASTV-NGMVASASHDKCVKIWK 545 (545)
Q Consensus 479 v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~------~~~--~~~~h~~~V~~l~~spd-~~~las~s~Dg~I~iWd 545 (545)
++.+.|. + ..|++++.|+.|++|..... +.+ ....|...|+++.|.|. .++|++|+.||.|++|.
T Consensus 236 ~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 236 LYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 9999998 4 45999999999999976542 111 23479999999999995 67999999999999994
No 22
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-36 Score=283.00 Aligned_cols=289 Identities=20% Similarity=0.332 Sum_probs=243.6
Q ss_pred eeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC---CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 009059 251 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 251 ~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~---~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg 327 (545)
.+..+.+++..|++.|+-+.||++|+|||+++.|.+..+|++.. .+...++.+|..+|..+.|+||.++|++|+.|.
T Consensus 212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE 291 (519)
T ss_pred CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH
Confidence 45667889999999999999999999999999999999998753 456789999999999999999999999999999
Q ss_pred eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec--cCCeeEEEEeCCCCEE
Q 009059 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRI 405 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~--~~~v~~l~~sp~~~~l 405 (545)
.+.+||+.++......-.+|...+.+++|.||+..++ +|+.|++|..||+.... ....+. ...+.++++.++|.++
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V-~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~v 369 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFV-TGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYV 369 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCCceeE-ecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEE
Confidence 9999999998753333344568899999999987765 99999999999998433 333332 2358899999999999
Q ss_pred EEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCc---eEE
Q 009059 406 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHS 481 (545)
Q Consensus 406 ~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~---v~~ 481 (545)
++.+.|..|++|+.++...+..+. ...+|++++.+.+++++.+.- +..|.+||+... ..+..+.+|... |.+
T Consensus 370 l~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---~lv~kY~Ghkq~~fiIrS 445 (519)
T KOG0293|consen 370 LLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---KLVRKYFGHKQGHFIIRS 445 (519)
T ss_pred EEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---hHHHHhhcccccceEEEe
Confidence 999999999999999876665444 457899999999999988877 889999999854 556666666543 333
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCC-CEEEEEeCCCcEEEcC
Q 009059 482 CVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 545 (545)
Q Consensus 482 ~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~-~~las~s~Dg~I~iWd 545 (545)
|---.+..++++|+.|+.|+||+..+++++ .+.+|...|++++|+|.. .++|+||+||+|+||.
T Consensus 446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 333445589999999999999999999999 889999999999999976 5899999999999994
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-34 Score=290.49 Aligned_cols=287 Identities=22% Similarity=0.342 Sum_probs=249.5
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 009059 254 TEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 332 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg~~latg~~d-g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vw 332 (545)
..+..+.-...+|..++|+..|.+||.|+.. |.+.||+..+..-+...++|...+++++++|||.++|||+.||.|+||
T Consensus 298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEE
Confidence 3445555556789999999999999998754 799999999888888889999999999999999999999999999999
Q ss_pred ECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC--eeEEEEeCCCCEEEEEEC
Q 009059 333 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI 410 (545)
Q Consensus 333 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~~~~~ 410 (545)
|..++- |+.+|..|+..|+.+.|+..+..++ +.+.||+|+.||+...++.+++..+.+ ..|++..|.|..+++|+.
T Consensus 378 n~~Sgf-C~vTFteHts~Vt~v~f~~~g~~ll-ssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 378 NTQSGF-CFVTFTEHTSGVTAVQFTARGNVLL-SSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQ 455 (893)
T ss_pred eccCce-EEEEeccCCCceEEEEEEecCCEEE-EeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeecc
Confidence 999765 5999999999999999999976555 889999999999999999999988776 467888888888888887
Q ss_pred CC-eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC
Q 009059 411 EN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 488 (545)
Q Consensus 411 dg-~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~ 488 (545)
|. .|++|++++|+.+-.+.||.++|.+++|+|.+..|++++ |.+|++||+-... ..+.++ .+...+..+.|+|+|
T Consensus 456 d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~--~~vEtl-~i~sdvl~vsfrPdG 532 (893)
T KOG0291|consen 456 DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS--GTVETL-EIRSDVLAVSFRPDG 532 (893)
T ss_pred ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC--ceeeeE-eeccceeEEEEcCCC
Confidence 76 799999999999999999999999999999999999999 9999999987642 222333 356789999999999
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEE-Eec--------------------cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 489 PSLLVIGCYETLELWNMTENKTL-TLS--------------------AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 489 ~~l~~~~~dg~I~iwd~~~~~~~-~~~--------------------~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+.|++++.||.|.+||++.+..+ .+. ......+.|++++||.+|++||....|+||+
T Consensus 533 ~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 533 KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 99999999999999999876544 111 1235789999999999999999999999985
No 24
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=7.3e-34 Score=316.85 Aligned_cols=303 Identities=17% Similarity=0.255 Sum_probs=249.2
Q ss_pred ceeeeeecCCceeeEE--EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----e----EEEEeccCCccEE
Q 009059 240 RVGRSAEVGKGFTFTE--FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----T----VKSTLEEHTQWIT 309 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~--~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~----~----~~~~l~~h~~~V~ 309 (545)
...++|+..+-..... ...+..|.+.|++++|+|+|++||+|+.|+.|+||+.... . ....+. +...|.
T Consensus 458 gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~ 536 (793)
T PLN00181 458 GLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLS 536 (793)
T ss_pred hhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCcee
Confidence 3455555443322111 1234569999999999999999999999999999997532 1 122333 346799
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe
Q 009059 310 DVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 388 (545)
Q Consensus 310 ~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~ 388 (545)
+++|++ ++.+|++++.||+|++||+.++.. +..+.+|...|++++|+|....+|++|+.|+.|++||++++.++..+.
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~-~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVARSQL-VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCCCeE-EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 999987 478999999999999999997664 788899999999999998556678899999999999999999998888
Q ss_pred ccCCeeEEEEeC-CCCEEEEEECCCeEEEEECCCCE-EEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC-
Q 009059 389 CQSGATQMRFQP-RLGRILAAAIENYISILDVETQV-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS- 464 (545)
Q Consensus 389 ~~~~v~~l~~sp-~~~~l~~~~~dg~I~i~d~~~~~-~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~- 464 (545)
....+.++.|.+ ++..+++++.||.|++||+++.. .+..+.+|...|.++.|. ++.+|++++ |+.|++||+....
T Consensus 616 ~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~ 694 (793)
T PLN00181 616 TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSIS 694 (793)
T ss_pred cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCcc
Confidence 777899999964 67889999999999999998765 567788999999999997 677888888 9999999997532
Q ss_pred --CcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE--------------EeccCCCCeeEEEEeCC
Q 009059 465 --KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--------------TLSAHDKLVSSLAASTV 528 (545)
Q Consensus 465 --~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--------------~~~~h~~~V~~l~~spd 528 (545)
...++..+.+|...+..+.|++++.+|++|+.|+.|++|+....... ....|...|.+++|+++
T Consensus 695 ~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 695 GINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred ccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 23567788899999999999999999999999999999998655332 11235567999999999
Q ss_pred CCEEEEEeCCCcEEEcC
Q 009059 529 NGMVASASHDKCVKIWK 545 (545)
Q Consensus 529 ~~~las~s~Dg~I~iWd 545 (545)
+.+|++|+.||.|+||+
T Consensus 775 ~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 775 SSTLVAANSTGNIKILE 791 (793)
T ss_pred CCeEEEecCCCcEEEEe
Confidence 99999999999999996
No 25
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.3e-34 Score=267.99 Aligned_cols=300 Identities=15% Similarity=0.205 Sum_probs=262.0
Q ss_pred CcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcC
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 315 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp 315 (545)
++.|-..-+|+..+|. ....+.+|++.|+|+.|+.||.+||||+-+|.|+||+..++.....+...-..|.-+.|+|
T Consensus 82 GGgDD~AflW~~~~ge---~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp 158 (399)
T KOG0296|consen 82 GGGDDLAFLWDISTGE---FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP 158 (399)
T ss_pred cCCCceEEEEEccCCc---ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc
Confidence 4456678899999987 5667889999999999999999999999999999999999999988877777899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec--cCCe
Q 009059 316 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGA 393 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~--~~~v 393 (545)
.+..|+.|+.||.+-+|.+.+... .+.+.+|..++++=.|.|+|++++ ++..||+|++||+.++.++..+.. +...
T Consensus 159 ~a~illAG~~DGsvWmw~ip~~~~-~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~ 236 (399)
T KOG0296|consen 159 RAHILLAGSTDGSVWMWQIPSQAL-CKVMSGHNSPCTCGEFIPDGKRIL-TGYDDGTIIVWNPKTGQPLHKITQAEGLEL 236 (399)
T ss_pred cccEEEeecCCCcEEEEECCCcce-eeEecCCCCCcccccccCCCceEE-EEecCceEEEEecCCCceeEEecccccCcC
Confidence 999999999999999999998654 789999999999999999987666 899999999999999999888763 3347
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec--------CCCCCEEEEE---EcCCCCEEEEEe-CCcEEEEEcC
Q 009059 394 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------GHKNQVHSVC---WNTSGEYLASVS-DELVRVWSIG 461 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--------~h~~~I~~l~---~sp~g~~l~s~s-dg~I~vwd~~ 461 (545)
.++.++..+..++.+..++.+++....+++.+.... .+...+.|+. |+..-.+.|+|+ ||+|.|||+.
T Consensus 237 ~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a 316 (399)
T KOG0296|consen 237 PCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLA 316 (399)
T ss_pred CccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecc
Confidence 788899888889999999999999999998887766 2444445554 444557788888 9999999997
Q ss_pred CCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCc
Q 009059 462 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKC 540 (545)
Q Consensus 462 ~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~ 540 (545)
.. .++..-.|...|..+.|-+ ..+|++++.+|.|+.||.+++.++ .+.+|...|.+++++|+.++++|+|.|++
T Consensus 317 ~~----~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 317 AS----TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred cc----hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence 74 2334445788899999999 788999999999999999999998 88899999999999999999999999999
Q ss_pred EEEcC
Q 009059 541 VKIWK 545 (545)
Q Consensus 541 I~iWd 545 (545)
.+||+
T Consensus 392 a~VF~ 396 (399)
T KOG0296|consen 392 ALVFE 396 (399)
T ss_pred EEEEe
Confidence 99985
No 26
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7e-35 Score=296.12 Aligned_cols=269 Identities=23% Similarity=0.396 Sum_probs=235.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-------------------------------eEEEEeccCCccEEE
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-------------------------------TVKSTLEEHTQWITD 310 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~-------------------------------~~~~~l~~h~~~V~~ 310 (545)
-...++|+.|++|+.+||.|-.|..|++|.+... ....++.+|.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 3456999999999999999999999999987521 122346789999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-
Q 009059 311 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC- 389 (545)
Q Consensus 311 l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~- 389 (545)
+.|+|+.++|++++.|++||+|.+.+... +..+.+|..+|+.+.|+|.| +++++++.|++-++|......+++.+..
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~-~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~PlRifagh 534 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSC-LVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPLRIFAGH 534 (707)
T ss_pred eeecccccceeeccCCcceeeeeccccee-EEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCchhhhccc
Confidence 99999999999999999999999998765 88899999999999999996 6777999999999999999888888764
Q ss_pred cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcce
Q 009059 390 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC 468 (545)
Q Consensus 390 ~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~ 468 (545)
.+.+.|+.|+|+..++++|+.|.+|++||+.+|..++.|.||.++|.+++|+|+|++|++|+ |+.|.+||+.++ ..
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~---~~ 611 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG---SL 611 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC---cc
Confidence 46699999999999999999999999999999999999999999999999999999999999 999999999988 77
Q ss_pred EEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-------------------------EeccCCCCeeEE
Q 009059 469 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-------------------------TLSAHDKLVSSL 523 (545)
Q Consensus 469 i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-------------------------~~~~h~~~V~~l 523 (545)
+..+.+|.+.|.++.|+.+|..|++++.|.+|++||+..-... .+.....+|..+
T Consensus 612 v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l 691 (707)
T KOG0263|consen 612 VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGL 691 (707)
T ss_pred hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEE
Confidence 8888899999999999999999999999999999998542211 233344578888
Q ss_pred EEeCCCCEEEEE
Q 009059 524 AASTVNGMVASA 535 (545)
Q Consensus 524 ~~spd~~~las~ 535 (545)
.|...+-.|++|
T Consensus 692 ~FtrrNl~L~~g 703 (707)
T KOG0263|consen 692 HFTRRNLLLAVG 703 (707)
T ss_pred EEeccceeEEec
Confidence 887666445444
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-34 Score=289.01 Aligned_cols=288 Identities=21% Similarity=0.323 Sum_probs=258.7
Q ss_pred EEEEeecCCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 009059 254 TEFQLIPASTSKVESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 332 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~s-pdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vw 332 (545)
+.++.+-|..+.|..++|- |+..+||+++..+.+++|+..+..+. .+.+|++.|.++....+|-+|+||+.|.++++|
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilW 392 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILW 392 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEE
Confidence 3445566888899999874 57789999999999999998876666 889999999999966677899999999999999
Q ss_pred ECCCCC---eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee---eEE-------eccCCeeEEEEe
Q 009059 333 DTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVF-------KCQSGATQMRFQ 399 (545)
Q Consensus 333 d~~~~~---~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~---~~~-------~~~~~v~~l~~s 399 (545)
.++++. .++....+|...|.+++++..+..+|++++.|+++++|++...+.. ..+ .|...|++++++
T Consensus 393 r~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia 472 (775)
T KOG0319|consen 393 RLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA 472 (775)
T ss_pred EecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec
Confidence 985433 2455678999999999999988999999999999999999762211 111 256679999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCc
Q 009059 400 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 478 (545)
Q Consensus 400 p~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~ 478 (545)
|+...+++|+.|.+.+||+++......++.+|...|.|+.|+|..+.+++++ |.+|+||.+.+. .|+.++.+|...
T Consensus 473 ~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH~~a 549 (775)
T KOG0319|consen 473 PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGHTSA 549 (775)
T ss_pred CCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCccce
Confidence 9999999999999999999999999999999999999999999999999999 999999999887 999999999999
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 479 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 479 v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|..+.|-.++..|++++.||-|++|+++++++. ++.+|...|++++.++...+++||+.||.|.+|+
T Consensus 550 Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 550 VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 999999999999999999999999999999999 8999999999999999999999999999999995
No 28
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=255.19 Aligned_cols=262 Identities=24% Similarity=0.361 Sum_probs=232.9
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC------eEEEEeccCCccE
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWI 308 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~------~~~~~l~~h~~~V 308 (545)
..+.|..+-+||..+... +..++-....|..|+|+|.|+++|+|+-|+...||++.+. +..+.+.+|++.+
T Consensus 72 SaSqDGklIvWDs~TtnK---~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgyl 148 (343)
T KOG0286|consen 72 SASQDGKLIVWDSFTTNK---VHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYL 148 (343)
T ss_pred eeccCCeEEEEEcccccc---eeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCcccee
Confidence 345567788898777653 4556677889999999999999999999999999999854 4457789999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe
Q 009059 309 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 388 (545)
Q Consensus 309 ~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~ 388 (545)
.|+.|.+ ...|+|++.|.++.+||++++.. +..|.+|.+.|.++++.|...+.+++|+-|+..++||++.+.++..|.
T Consensus 149 ScC~f~d-D~~ilT~SGD~TCalWDie~g~~-~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ 226 (343)
T KOG0286|consen 149 SCCRFLD-DNHILTGSGDMTCALWDIETGQQ-TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE 226 (343)
T ss_pred EEEEEcC-CCceEecCCCceEEEEEcccceE-EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeec
Confidence 9999987 46799999999999999999876 899999999999999999555677799999999999999999999987
Q ss_pred c-cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC--CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC
Q 009059 389 C-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 464 (545)
Q Consensus 389 ~-~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~ 464 (545)
. ...|+.++|.|+|.-|++|+.|++.++||++....+..+.. ...+|++++|+..|++|++|. |..+.+||.-.+
T Consensus 227 ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~- 305 (343)
T KOG0286|consen 227 GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG- 305 (343)
T ss_pred ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc-
Confidence 4 45699999999999999999999999999999888877763 335899999999999999998 889999998776
Q ss_pred CcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 465 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 465 ~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
+.+..+.+|++.|.++..+|||.-+++|+.|..++||.
T Consensus 306 --e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 306 --ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 77888999999999999999999999999999999994
No 29
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-34 Score=289.15 Aligned_cols=303 Identities=20% Similarity=0.313 Sum_probs=249.0
Q ss_pred CcccceeeeeecCCceeeEEEEeecC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~~-H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
..+....++|.+.+|. .++.+++ |+++|.-++|+|.+.+|++|+.|+.|+|||+..+.+...|++|.+.|..+.|+
T Consensus 80 a~rs~llrv~~L~tgk---~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~ 156 (775)
T KOG0319|consen 80 ASRSQLLRVWSLPTGK---LIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFH 156 (775)
T ss_pred eeccceEEEEEcccch---HhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeC
Confidence 4456788999999984 5667777 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCC--EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC
Q 009059 315 PSLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG 392 (545)
Q Consensus 315 p~~~--~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~ 392 (545)
|+-. .|++|..|+++++||+.+...++.....|...|++++|.+++..++ +++.|..+.+||+.+.++.++......
T Consensus 157 ~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~l-s~~RDkvi~vwd~~~~~~l~~lp~ye~ 235 (775)
T KOG0319|consen 157 PHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELL-SVGRDKVIIVWDLVQYKKLKTLPLYES 235 (775)
T ss_pred CccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEE-EeccCcEEEEeehhhhhhhheechhhh
Confidence 9654 5899999999999999976667888999999999999999977666 888999999999865443322211100
Q ss_pred ee------------------------------------------------------------------------------
Q 009059 393 AT------------------------------------------------------------------------------ 394 (545)
Q Consensus 393 v~------------------------------------------------------------------------------ 394 (545)
+.
T Consensus 236 ~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i 315 (775)
T KOG0319|consen 236 LESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTI 315 (775)
T ss_pred eeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEE
Confidence 00
Q ss_pred ------------------------------------------------------EEEEeCCCCEEEEEECCCeEEEEECC
Q 009059 395 ------------------------------------------------------QMRFQPRLGRILAAAIENYISILDVE 420 (545)
Q Consensus 395 ------------------------------------------------------~l~~sp~~~~l~~~~~dg~I~i~d~~ 420 (545)
++.....|..|++++.|..+++|.++
T Consensus 316 ~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 316 VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence 11111222244555555566666442
Q ss_pred CCE----------------------------------------------------EEE----EecCCCCCEEEEEEcCCC
Q 009059 421 TQV----------------------------------------------------CRL----KLQGHKNQVHSVCWNTSG 444 (545)
Q Consensus 421 ~~~----------------------------------------------------~~~----~~~~h~~~I~~l~~sp~g 444 (545)
++. ... ....|...|+|++++|+.
T Consensus 396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd 475 (775)
T KOG0319|consen 396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND 475 (775)
T ss_pred CCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC
Confidence 110 000 112477889999999999
Q ss_pred CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeE
Q 009059 445 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSS 522 (545)
Q Consensus 445 ~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~ 522 (545)
+++|+|+ |.+.+||++... ....++.+|...|+++.|++....+++++.|.+|+||.+.+..++ ++.+|...|..
T Consensus 476 kLiAT~SqDktaKiW~le~~---~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlr 552 (775)
T KOG0319|consen 476 KLIATGSQDKTAKIWDLEQL---RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLR 552 (775)
T ss_pred ceEEecccccceeeecccCc---eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEe
Confidence 9999999 999999999854 788999999999999999999999999999999999999999999 88999999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEcC
Q 009059 523 LAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 523 l~~spd~~~las~s~Dg~I~iWd 545 (545)
+.|-.++..|++++.||.||||+
T Consensus 553 a~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 553 ASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred eeeeeCCcEEEeccCCCcEEEEe
Confidence 99999999999999999999996
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.7e-32 Score=272.94 Aligned_cols=280 Identities=21% Similarity=0.327 Sum_probs=254.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCCe
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDY 339 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d-g~I~vwd~~~~~~ 339 (545)
.....|+|++|++.-+.||+|-..|...+|.+....+++.+.-...+|..++|+..|.+||.|+.. |.+-||++.+..+
T Consensus 263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY 342 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY 342 (893)
T ss_pred ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce
Confidence 344789999999999999999999999999999999999998888899999999999999998764 8999999998776
Q ss_pred eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEE
Q 009059 340 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILD 418 (545)
Q Consensus 340 ~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d 418 (545)
+....+|...+++++++||| .++++|+.||.|++||...+-|..+|. +...++.+.|+..++.+++.+.||+|+.||
T Consensus 343 -VlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 343 -VLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred -eeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 67778999999999999997 466799999999999999999999986 556799999999999999999999999999
Q ss_pred CCCCEEEEEecCC-CCCEEEEEEcCCCCEEEEEe-CC-cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE
Q 009059 419 VETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 495 (545)
Q Consensus 419 ~~~~~~~~~~~~h-~~~I~~l~~sp~g~~l~s~s-dg-~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~ 495 (545)
+...+..+++... .-...|++..|.|.++++|+ |. .|.||++.++ ..+..+.+|.++|.+++|+|.+..|++++
T Consensus 421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG---qllDiLsGHEgPVs~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG---QLLDILSGHEGPVSGLSFSPDGSLLASGS 497 (893)
T ss_pred ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC---eeeehhcCCCCcceeeEEccccCeEEecc
Confidence 9999999988763 34678999999999999999 76 8999999998 78889999999999999999999999999
Q ss_pred cCCeEEEEeCCCC-eEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 496 CYETLELWNMTEN-KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 496 ~dg~I~iwd~~~~-~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.|.+|++||+-.. ..+....+...+.+++|+|||+-||+++.||.|.+||
T Consensus 498 WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 498 WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred ccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 9999999999655 3334456788899999999999999999999999997
No 31
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.4e-34 Score=289.68 Aligned_cols=243 Identities=25% Similarity=0.423 Sum_probs=221.7
Q ss_pred EEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC------------------------------eeeeEeccCc
Q 009059 299 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------------------------------YSLRTFTGHS 348 (545)
Q Consensus 299 ~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~------------------------------~~~~~~~~h~ 348 (545)
.++......++|..|++|+++||.|-.|..|++|.+...+ ...+++.+|.
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~ 451 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS 451 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence 3444445679999999999999999999999999987311 1234678999
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEE
Q 009059 349 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 427 (545)
Q Consensus 349 ~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~ 427 (545)
++|+...|+|+.+. |++|+.|+++|+|.+.+..++-.++.+ .+|..+.|+|.|-++++++.|++-++|......+.+.
T Consensus 452 GPVyg~sFsPd~rf-LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi 530 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRF-LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI 530 (707)
T ss_pred Cceeeeeecccccc-eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh
Confidence 99999999999654 559999999999999999998888744 5689999999999999999999999999999999999
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 428 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 428 ~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
+.+|-+.|.|+.|+|+..|+++|+ |.+|++||+.++ ..+..+.+|..+|.+++|+|+|++|++|+.|+.|.+||+.
T Consensus 531 faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G---~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG---NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred hcccccccceEEECCcccccccCCCCceEEEEEcCCC---cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 999999999999999999999999 999999999998 7899999999999999999999999999999999999999
Q ss_pred CCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 507 ENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 507 ~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+++.+ .+.+|.+.|.+|.|+.||..||+|+.|.+|++||
T Consensus 608 ~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 608 NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 99888 8889999999999999999999999999999997
No 32
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.7e-33 Score=244.32 Aligned_cols=280 Identities=18% Similarity=0.350 Sum_probs=241.5
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
....+..|.++|.++.|+-||+|.++++.|++|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|+.|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC--ceeeEEe-ccCCeeEEEEeCCCCEEEEEECC
Q 009059 335 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFK-CQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 335 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~--~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
.+++. ++.+.+|.+.|+.+.|+.+. .++++|+.|..+++||.+.. +++..+. ....|.++.+.. ..|++|+.|
T Consensus 89 ~TGkv-~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--heIvaGS~D 164 (307)
T KOG0316|consen 89 NTGKV-DRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--HEIVAGSVD 164 (307)
T ss_pred ccCee-eeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--cEEEeeccC
Confidence 99986 99999999999999999874 67779999999999999864 4454443 335677777764 578999999
Q ss_pred CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCce--EEEEEcCCC
Q 009059 412 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF--HSCVFHPTF 488 (545)
Q Consensus 412 g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v--~~~~~sp~~ 488 (545)
|+++.||++.|.....+-+ .+|+|++|+++++.+.+++ |+++++.|-.++ +.+..+++|.+.- ..+++....
T Consensus 165 GtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred CcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhcccccceeeeeeeecccc
Confidence 9999999999987766654 4899999999999999988 999999999888 6677777777654 456777788
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEE-EeccCCCC-eeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 489 PSLLVIGCYETLELWNMTENKTL-TLSAHDKL-VSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 489 ~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~-V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
..+++|+.||.|++||+.+...+ .+..|... |.+++++|.-.-|+++... .+.+|
T Consensus 240 thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~ 296 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFW 296 (307)
T ss_pred eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceece
Confidence 88999999999999999998888 66666666 7899999988777777543 35555
No 33
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-33 Score=276.53 Aligned_cols=282 Identities=22% Similarity=0.409 Sum_probs=256.7
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 009059 257 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 336 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~ 336 (545)
+.+..|+.+|.|+.|+|...+++++-..|.|.|||.++...++.+.-..-+|.+..|-...+++++|+.|..|+||+..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 45566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-CceeeEEeccCC-eeEEEEeCC-CCEEEEEECCCe
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSG-ATQMRFQPR-LGRILAAAIENY 413 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~-~~~~~~~~~~~~-v~~l~~sp~-~~~l~~~~~dg~ 413 (545)
... +..|..|.+.|.+++.||...+++ +++.|-.|++||.+. ..|..+|..+.. |.+++|+|. .+.+++++-|++
T Consensus 87 ~ek-V~~FeAH~DyIR~iavHPt~P~vL-tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 87 GEK-VKTFEAHSDYIRSIAVHPTLPYVL-TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred cee-eEEeeccccceeeeeecCCCCeEE-ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 876 999999999999999999977666 999999999999985 467778876554 999999994 567889999999
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCC--CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSG--EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g--~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~ 490 (545)
|+||.+....+..++++|...|+|+++-+.| .||++|+ |.+|+|||..+. .|+.++.+|...|..+.|+|.-+.
T Consensus 165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPELPI 241 (794)
T ss_pred EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCCcE
Confidence 9999999999999999999999999998755 6999999 779999999876 999999999999999999999999
Q ss_pred EEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 491 LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 491 l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
+++|+.||+++||+..+-+.. ++.-.-..|++++-.+.++.++.|.+.|.|.|
T Consensus 242 iisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999999999888776 55566788999999999999999998887754
No 34
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.6e-33 Score=278.07 Aligned_cols=281 Identities=20% Similarity=0.390 Sum_probs=256.4
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 009059 257 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 336 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~ 336 (545)
..+.||...|.+++||.|...+++|+ .+.|+||+..+.++++++.. +.+.+..|.|.++++++|...|.+.+||+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 34679999999999999988888875 57999999999999999964 3899999999999999999999999999998
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-----Cce--------eeEEeccCCeeEEEEeCCCC
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSC--------AGVFKCQSGATQMRFQPRLG 403 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~-----~~~--------~~~~~~~~~v~~l~~sp~~~ 403 (545)
... +.+...|.+.|+.++..|++..++ +|+.|.+|++||..- +.. .+++.....+.|+.++|++.
T Consensus 444 ~~l-~Eti~AHdgaIWsi~~~pD~~g~v-T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 444 ASL-VETIRAHDGAIWSISLSPDNKGFV-TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred hhh-hhhhhccccceeeeeecCCCCceE-EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 765 778889999999999999987776 999999999999741 111 13556678899999999999
Q ss_pred EEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEE
Q 009059 404 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 482 (545)
Q Consensus 404 ~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~ 482 (545)
+++++--|++|+||-+.+.+....+.||.-+|.|+..+||++++++|+ |..|+||-+.-| .|-..+-.|...|.++
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSV 598 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc---hhhhhhhcccCceeEE
Confidence 999999999999999999999999999999999999999999999999 999999999776 8888999999999999
Q ss_pred EEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 483 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 483 ~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.|-|....+++++.|+.|+-||-..-+.+ .+.+|...|++++.+|+|.++++++.|.+|++|.
T Consensus 599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 599 QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999999999999999999888877 8899999999999999999999999999999994
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4e-34 Score=264.22 Aligned_cols=268 Identities=22% Similarity=0.396 Sum_probs=233.3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 009059 259 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
-......|+|+.+. ...+++|..|++|+|||..+..+...+.+|++.|.|+.| +.+.|++|+.|.+|+|||+++++
T Consensus 193 ~Se~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 193 RSENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred CcccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCc
Confidence 33456789999985 457999999999999999999999999999999999999 45699999999999999999987
Q ss_pred eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee---eEE-eccCCeeEEEEeCCCCEEEEEECCCeE
Q 009059 339 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVF-KCQSGATQMRFQPRLGRILAAAIENYI 414 (545)
Q Consensus 339 ~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~---~~~-~~~~~v~~l~~sp~~~~l~~~~~dg~I 414 (545)
. +.++.+|...|..+.|+ +.++++|+.|.+|.+||+.....+ +.+ .+...|+.+.|+. +++++++.|.+|
T Consensus 269 ~-l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTi 342 (499)
T KOG0281|consen 269 P-LNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTI 342 (499)
T ss_pred h-hhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceE
Confidence 4 99999999999999998 346779999999999999865422 222 2345678888875 589999999999
Q ss_pred EEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 415 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 415 ~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
++|+..+++.+.++.+|...|.|+.+ .|+++++|+ |.+|++||+..+ .|+..+.+|..-|.++.|. .+.|++
T Consensus 343 kvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRFd--~krIVS 415 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRFD--NKRIVS 415 (499)
T ss_pred EEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---HHHHHHhchHHhhhheeec--Cceeee
Confidence 99999999999999999999999986 689999999 999999999988 8999999999999999995 455999
Q ss_pred EEcCCeEEEEeCCCCeE---------E-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 494 IGCYETLELWNMTENKT---------L-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 494 ~~~dg~I~iwd~~~~~~---------~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|+.||+|+|||+..+.- + .+..|.+.|..+.|. ...+++++.|.+|.|||
T Consensus 416 GaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 416 GAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD 475 (499)
T ss_pred ccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence 99999999999976542 1 456799999999994 66899999999999997
No 36
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=8.9e-32 Score=241.00 Aligned_cols=281 Identities=19% Similarity=0.257 Sum_probs=239.9
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 009059 258 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 337 (545)
Q Consensus 258 ~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~ 337 (545)
.+.||..+++.+.|+.+|.+|++++.|.++.||-..+|+.+-++.+|.+.|+|+....+.++|+||+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeEeccCcccEEEEEEeCCCCcEEEEEc----CCCcEEEEECCC-------CceeeEEe-ccCCeeEEEEeCCCCEE
Q 009059 338 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSINN-------GSCAGVFK-CQSGATQMRFQPRLGRI 405 (545)
Q Consensus 338 ~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s----~dg~I~lwd~~~-------~~~~~~~~-~~~~v~~l~~sp~~~~l 405 (545)
+. +..+. ...+|..+.|+++++.++++.. ..+.|.++|++. .++...+. ....++.+-|.|-+..|
T Consensus 85 k~-la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 85 KQ-LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred cE-EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 86 55555 5678999999999887776543 346899999983 44444443 45679999999999999
Q ss_pred EEEECCCeEEEEECCCC-EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEE
Q 009059 406 LAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 483 (545)
Q Consensus 406 ~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~ 483 (545)
++|..+|.|.+||++++ +.+.....|...|+.+.++++..++++++ |.+-++||+.+. .++.++. ...+|++.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---~v~Kty~-te~PvN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---EVLKTYT-TERPVNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---eeEEEee-eccccccee
Confidence 99999999999999997 45556677999999999999999999999 999999999886 6677766 467899999
Q ss_pred EcCCCCEEEEEEcCCeEEE--EeCCCCe------------EE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 484 FHPTFPSLLVIGCYETLEL--WNMTENK------------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 484 ~sp~~~~l~~~~~dg~I~i--wd~~~~~------------~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
++|...+++.|+......| -+.+.++ .+ .+.+|-++|++++|+|+|+..++|++||.|+|.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 9999988888876553222 2223332 22 567899999999999999999999999999973
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8e-33 Score=257.55 Aligned_cols=262 Identities=25% Similarity=0.455 Sum_probs=238.3
Q ss_pred CcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CeEEEEeccCCccEEEEEEc
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~-~~~~~~l~~h~~~V~~l~~s 314 (545)
...|..+++||..+|.. ...++||++.|..++|+..|++||+++.|-.+.+||.++ .++++.+.+|...|.+++|-
T Consensus 126 as~d~tikv~D~~tg~~---e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~ 202 (406)
T KOG0295|consen 126 ASEDATIKVFDTETGEL---ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFL 202 (406)
T ss_pred ecCCceEEEEEccchhh---hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEE
Confidence 34578899999998875 688999999999999999999999999999999999987 67778889999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCe
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGA 393 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v 393 (545)
|.|.+|++++.|.+|+.|++.++. ++.++.+|...|..++.+.|| .++++|+.|.+|++|-+.+++|...+.. ...+
T Consensus 203 P~gd~ilS~srD~tik~We~~tg~-cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~v 280 (406)
T KOG0295|consen 203 PLGDHILSCSRDNTIKAWECDTGY-CVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPV 280 (406)
T ss_pred ecCCeeeecccccceeEEecccce-eEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccce
Confidence 999999999999999999999876 599999999999999999986 6888999999999999999987776653 3457
Q ss_pred eEEEEeCC---------------CCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEE
Q 009059 394 TQMRFQPR---------------LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV 457 (545)
Q Consensus 394 ~~l~~sp~---------------~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~v 457 (545)
.+++|.|. +..+.+++.|++|++||+.++.++.++.+|...|..++|+|.|+||+++. |+++++
T Consensus 281 Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrv 360 (406)
T KOG0295|consen 281 ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRV 360 (406)
T ss_pred EEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEE
Confidence 77777653 13678888999999999999999999999999999999999999999999 889999
Q ss_pred EEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 458 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 458 wd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
||+.+. .|...+..|..-++++.|+.+..++++|+-|..+++|.-
T Consensus 361 wdl~~~---~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 361 WDLKNL---QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEeccc---eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999887 899999999999999999999999999999999999974
No 38
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.1e-32 Score=252.98 Aligned_cols=285 Identities=19% Similarity=0.246 Sum_probs=245.6
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
.+.+|..|++.|++|+.+|+.+++|||+.|....||++.++.....+.+|++.|+++.|+.+|.+||||..+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 335 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 335 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
.++.. ...+...-..+.=+.|||.+ .+|+.|+.||.|.+|.+.+....+.+. +..++++-.|.|+|++++++..||+
T Consensus 136 stg~~-~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 STGGE-QWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred ccCce-EEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 98876 45554556678889999975 566699999999999999876666665 4557899999999999999999999
Q ss_pred EEEEECCCCEEEEEecC-CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe--------eCCC---ceE
Q 009059 414 ISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS--------CTGN---KFH 480 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~-h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~--------~~~~---~v~ 480 (545)
|++|++.++.++..+.. ......++.++..+..++.|+ ++.+++-+..+++ .+.... .+.. .|.
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK---Vv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGK---VVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccce---EEEecCCCCccccccchhhhhhhh
Confidence 99999999999988874 334678889988999999988 8888888887773 333333 2233 344
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 481 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 481 ~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+.++..-+..++|+-||+|.|||+...++.....|...|+.+.|-+ ..+|++++.||.|++||
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 45556666788999999999999999999988889999999999998 78999999999999997
No 39
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.2e-33 Score=247.09 Aligned_cols=280 Identities=21% Similarity=0.268 Sum_probs=249.6
Q ss_pred eecCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 258 LIPASTSKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 258 ~l~~H~~~V~~l~~sp---dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
+-.+|+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+-++.+|.+.|+...+..+...-++++.|-+-+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 3468999999999987 8999999999999999999999999999999999999999998889999999999999999
Q ss_pred CCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce-eeE-EeccCCeeEEEEeCCCCEEEEEECCC
Q 009059 335 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGV-FKCQSGATQMRFQPRLGRILAAAIEN 412 (545)
Q Consensus 335 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~-~~~-~~~~~~v~~l~~sp~~~~l~~~~~dg 412 (545)
-++.. +..|. |..-|.+++|+.|.++++ +|+.+.-+|+||++..+. ... -.+.+.|..+.|......|++++.|+
T Consensus 89 ~tgde-lhsf~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 89 VTGDE-LHSFE-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hhhhh-hhhhh-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 98875 66665 888999999999987776 999999999999986542 223 34567799999999889999999999
Q ss_pred eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEE
Q 009059 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 492 (545)
Q Consensus 413 ~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~ 492 (545)
+|++||.+++..+..+. ...+|+++.++++|++|.++..+.|.+||..+. ..+..+. ....|.+..++|+...++
T Consensus 166 tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf---~~lKs~k-~P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF---GLLKSYK-MPCNVESASLHPKKEFFV 240 (334)
T ss_pred ceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc---cceeecc-CccccccccccCCCceEE
Confidence 99999999999999987 578999999999999999988889999999776 4455444 356789999999999999
Q ss_pred EEEcCCeEEEEeCCCCeEE-E-eccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 493 VIGCYETLELWNMTENKTL-T-LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 493 ~~~~dg~I~iwd~~~~~~~-~-~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+|+.|..++.||..+++.+ . ..+|.++|.|+.|+|+|...|+|+.||+|+||.
T Consensus 241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 9999999999999999988 3 379999999999999999999999999999994
No 40
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=258.03 Aligned_cols=279 Identities=24% Similarity=0.387 Sum_probs=245.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec--------cCCccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------EHTQWITDVRFSPSLSRLATSSADRTVRVW 332 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~--------~h~~~V~~l~~sp~~~~l~t~s~dg~I~vw 332 (545)
+....+.|..|||||.||++|+.||.|.|||..+|+....++ -+..+|.|+.|+.|..+||+|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 445668899999999999999999999999999998776553 478899999999999999999999999999
Q ss_pred ECCCCCeeeeEec-cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC-CeeEEEEeCCCCEEEEEEC
Q 009059 333 DTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAI 410 (545)
Q Consensus 333 d~~~~~~~~~~~~-~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~~~~~ 410 (545)
.+.++.+ ++.|. .|+..|+|+.|+.|+..++ +++.|.++++.-++.|++++.++.+. -|+...|.++|..+++++.
T Consensus 291 ri~tG~C-lRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 291 RIETGQC-LRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred EEecchH-HHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence 9999886 66655 8999999999999988777 99999999999999999999998654 4899999999999999999
Q ss_pred CCeEEEEECCCCEEEEEecC--CCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEEee---CCCceEEEE
Q 009059 411 ENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSC---TGNKFHSCV 483 (545)
Q Consensus 411 dg~I~i~d~~~~~~~~~~~~--h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~---~~~~v~~~~ 483 (545)
||+|++|+.++.+++.+++. ...+|+++..-|.+ ..++++. .++|+|.++.. ..+..+.. .++.+.+++
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEE
Confidence 99999999999999988875 45578888887765 5666666 88999999753 44555542 356788999
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 484 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 484 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+|.|.++++.+.|+.++.|.+.+++.- ++.-|+..|..++-+|..++||+-++||.+++|+
T Consensus 445 lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999998877 7788999999999999999999999999999996
No 41
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=7.6e-32 Score=240.74 Aligned_cols=282 Identities=17% Similarity=0.253 Sum_probs=249.7
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEE--EeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 009059 257 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD 333 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~--~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd 333 (545)
+.+++|..+|.+++|+-+|..||+|+.|+++.+|+++..+... ...+|.+.|-.++|+| ....|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5577899999999999999999999999999999998876554 3478999999999988 466899999999999999
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
++.++. ...... .+.-.-+.|+|+|++++ .++.|..|.+.|.++.+.....+....+..++|+.++..++.....|.
T Consensus 94 ~r~~k~-~~~i~~-~~eni~i~wsp~g~~~~-~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRSGKC-TARIET-KGENINITWSPDGEYIA-VGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred eccCcE-EEEeec-cCcceEEEEcCCCCEEE-EecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 998886 443332 33445688999987665 788899999999999999988888888999999987777777777899
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEE
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 492 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~ 492 (545)
|.|......+++..++.|.....||.|+|+|+|||+|+ |-.+.+||+... .|+..+..+.-+|+.+.|+.+|++|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL---iC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL---ICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh---hhheeeccccCceEEEEeccCcceee
Confidence 99999999999999999999999999999999999999 999999999655 88999999999999999999999999
Q ss_pred EEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCC---------CcEEEc
Q 009059 493 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD---------KCVKIW 544 (545)
Q Consensus 493 ~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~D---------g~I~iW 544 (545)
+++.|..|-|=++++|..+....+.++...++|+|...+||-+++| |.||||
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 9999999999999999999777899999999999999999988865 566665
No 42
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.3e-34 Score=267.89 Aligned_cols=258 Identities=23% Similarity=0.396 Sum_probs=222.2
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc-CCccEEEEEEcCCCC
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLS 318 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~-h~~~V~~l~~sp~~~ 318 (545)
....+|+. ..|..-.++.+|..+|.++.|+++|.++++|+.+|.|++|+..- ..+..+.. |...|.+++|+|+..
T Consensus 118 GEFtLWNg---~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDs 193 (464)
T KOG0284|consen 118 GEFTLWNG---TSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDS 193 (464)
T ss_pred ccEEEecC---ceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCc
Confidence 34566753 44555567889999999999999999999999999999999654 44455554 459999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEE
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 397 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~ 397 (545)
.|++|+.||+|+|||....+. .+.+.+|.-.|.+++|+|.. .++++++.|..|++||.+++.|+.++.. ...|..+.
T Consensus 194 kF~t~SdDg~ikiWdf~~~ke-e~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~ 271 (464)
T KOG0284|consen 194 KFLTCSDDGTIKIWDFRMPKE-ERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK 271 (464)
T ss_pred eeEEecCCCeEEEEeccCCch-hheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEE
Confidence 999999999999999987765 67789999999999999984 6788999999999999999999988764 45699999
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC
Q 009059 398 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCT 475 (545)
Q Consensus 398 ~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~ 475 (545)
|++++++|++++.|..+++||+++.+.+..+++|+..|+++.|+|-. .+|++|+ ||.|..|.+.... .....-..|
T Consensus 272 f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AH 349 (464)
T KOG0284|consen 272 FNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAH 349 (464)
T ss_pred EcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc--cccCCCccc
Confidence 99999999999999999999999989999999999999999999954 5666666 9999999987432 222233468
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 476 GNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 476 ~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
...|++++|+|-|..|++|+.|.++++|.-
T Consensus 350 d~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 350 DGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ccceeeeeccccceeEeecCCCcceeeecc
Confidence 899999999999999999999999999965
No 43
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-31 Score=270.03 Aligned_cols=301 Identities=20% Similarity=0.266 Sum_probs=254.6
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.|+.+++|+...+ ....++.||...|+++.|...|..||+|+.|+.|.|||+-.-.-+..+.+|.+.|+..-|..+.
T Consensus 85 aDGsVqif~~~s~---~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~ 161 (888)
T KOG0306|consen 85 ADGSVQIFSLESE---EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGD 161 (888)
T ss_pred cCceEEeeccCCC---ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCC
Confidence 4678899988866 4567899999999999999999999999999999999998777788888888888888888777
Q ss_pred CEEEEEeCCCeEEEEECCCCCe----------------------------------------------------------
Q 009059 318 SRLATSSADRTVRVWDTENPDY---------------------------------------------------------- 339 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~---------------------------------------------------------- 339 (545)
++|++.+.|+.|++||+++..+
T Consensus 162 ~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~r 241 (888)
T KOG0306|consen 162 SFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIR 241 (888)
T ss_pred eEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeee
Confidence 7888888888888888761000
Q ss_pred --------------------------------------------------------------------------------
Q 009059 340 -------------------------------------------------------------------------------- 339 (545)
Q Consensus 340 -------------------------------------------------------------------------------- 339 (545)
T Consensus 242 qsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~ 321 (888)
T KOG0306|consen 242 QSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSA 321 (888)
T ss_pred ccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechh
Confidence
Q ss_pred -------------e------------------------------eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEE
Q 009059 340 -------------S------------------------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 376 (545)
Q Consensus 340 -------------~------------------------------~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lw 376 (545)
. -..+.+|...|.+++++.+. .++++|+ .+.|++|
T Consensus 322 kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~-~~~~Sga-~~SikiW 399 (888)
T KOG0306|consen 322 KIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS-ILLASGA-GESIKIW 399 (888)
T ss_pred heeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc-eeeeecC-CCcEEEE
Confidence 0 01223577788888888763 4554554 7789999
Q ss_pred ECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcE
Q 009059 377 SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELV 455 (545)
Q Consensus 377 d~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I 455 (545)
+..+.+|++++... .+.+..|-|.+.++++|...|.+.+||+.+...+.++..|.+.|.+++.+||++.+++++ |.+|
T Consensus 400 n~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktV 478 (888)
T KOG0306|consen 400 NRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTV 478 (888)
T ss_pred EccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEE
Confidence 99999999999875 788999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEcCCCCC--cc--eEE-----EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEE
Q 009059 456 RVWSIGSGSK--GE--CIH-----ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAA 525 (545)
Q Consensus 456 ~vwd~~~~~~--~~--~i~-----~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~ 525 (545)
++||+.-... .. .+. ..-.-...|.++.+|||+++|+++--|.+++||-+++.+.. .+.+|.-+|.+|.+
T Consensus 479 kfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDI 558 (888)
T KOG0306|consen 479 KFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDI 558 (888)
T ss_pred EEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEec
Confidence 9999753211 01 111 11123577999999999999999999999999999999887 89999999999999
Q ss_pred eCCCCEEEEEeCCCcEEEc
Q 009059 526 STVNGMVASASHDKCVKIW 544 (545)
Q Consensus 526 spd~~~las~s~Dg~I~iW 544 (545)
+||+++++|||.|..|+||
T Consensus 559 S~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 559 SPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred cCCcCeEEeccCCCceEEe
Confidence 9999999999999999999
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-32 Score=276.14 Aligned_cols=282 Identities=21% Similarity=0.370 Sum_probs=250.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 009059 259 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
+...+..|..++|+|...+++++-..|.|.+||.+-+.++..|.+|.++|..++|+|.+.+|++|+.|-.|+||++.+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC-eeEEEEeCCCCEEEEEECCCeEEEE
Q 009059 339 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISIL 417 (545)
Q Consensus 339 ~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~~~~~dg~I~i~ 417 (545)
++.++.+|-+.|..+.|++.-..++ ++++|-+|+||+..+++|+..+..+.. |.|..|+|....+++++-|-+|+||
T Consensus 85 -clftL~GHlDYVRt~~FHheyPWIl-SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 85 -CLFTLLGHLDYVRTVFFHHEYPWIL-SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred -ehhhhccccceeEEeeccCCCceEE-EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 4899999999999999999877666 999999999999999999999986654 9999999988999999999999999
Q ss_pred ECCCC-----------------------------EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcc
Q 009059 418 DVETQ-----------------------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 467 (545)
Q Consensus 418 d~~~~-----------------------------~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~ 467 (545)
|+... ...+.+++|...|+-++|+|.-.+|++|+ |..|++|.....+. -
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-W 241 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-W 241 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc-e
Confidence 97521 12346789999999999999999999999 77999999876433 4
Q ss_pred eEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 468 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 468 ~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
.+.+..+|.+.|.++.|+|....|++.+.|++|+|||+.....+ ++....+..+.++.+|..+++|.|-+.| +.||
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VF 318 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVF 318 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEE
Confidence 56678899999999999999999999999999999999998888 6666678899999999999888776555 4444
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-31 Score=260.41 Aligned_cols=256 Identities=21% Similarity=0.276 Sum_probs=227.9
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCE
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 319 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~ 319 (545)
..+.+|+..+.. .++.+.-..-+|.++.|-+..+++++|+.|..|+||+..+++.+..++.|.+.|.|++.+|...+
T Consensus 35 G~V~IWnyetqt---mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~ 111 (794)
T KOG0276|consen 35 GDVQIWNYETQT---MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPY 111 (794)
T ss_pred CeeEEEecccce---eeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCe
Confidence 456677766653 35556666778999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEE
Q 009059 320 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF 398 (545)
Q Consensus 320 l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~ 398 (545)
+++++.|-+|++||.+..-.+.++|.+|+..|++++|+|....-+++++-|++|++|.+....+..++.. ..+|+++.+
T Consensus 112 vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdy 191 (794)
T KOG0276|consen 112 VLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDY 191 (794)
T ss_pred EEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEe
Confidence 9999999999999999887788999999999999999999999999999999999999999988888874 467999999
Q ss_pred eCCC--CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC
Q 009059 399 QPRL--GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 475 (545)
Q Consensus 399 sp~~--~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~ 475 (545)
-+.+ .++++|+.|..|+|||..+..|+.++.+|...|..++|+|.-.++++|+ ||+++||+..+- ....++.-.
T Consensus 192 y~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty---~lE~tLn~g 268 (794)
T KOG0276|consen 192 YTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY---KLEKTLNYG 268 (794)
T ss_pred ccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce---ehhhhhhcC
Confidence 8854 5899999999999999999999999999999999999999999999999 999999998776 444555666
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEE
Q 009059 476 GNKFHSCVFHPTFPSLLVIGCYETLE 501 (545)
Q Consensus 476 ~~~v~~~~~sp~~~~l~~~~~dg~I~ 501 (545)
...+++++-.+....+++|..+|.|.
T Consensus 269 leRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 269 LERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred CceEEEEeecCCCCeEEEeccCCcEE
Confidence 78899999888888777777776543
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.3e-31 Score=274.92 Aligned_cols=265 Identities=27% Similarity=0.435 Sum_probs=231.7
Q ss_pred CcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc-CCCeEEEEeccCCccEEEEEEc
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~-~~~~~~~~l~~h~~~V~~l~~s 314 (545)
...+..+++|....+.. ...+.+.+|...|.+++|+||++++++++.|++|+|||+ ..+..++++++|...|++++|+
T Consensus 177 ~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~ 255 (456)
T KOG0266|consen 177 ASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFS 255 (456)
T ss_pred ccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEec
Confidence 44677889998855543 456667999999999999999999999999999999999 5668999999999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc--eeeEEeccC-
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQS- 391 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~--~~~~~~~~~- 391 (545)
|+++++++|+.|++|+|||+++++ ++..+.+|...|++++|++++..++ +++.|+.|++||+.++. +...+....
T Consensus 256 p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~f~~d~~~l~-s~s~d~~i~vwd~~~~~~~~~~~~~~~~~ 333 (456)
T KOG0266|consen 256 PDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLAFSPDGNLLV-SASYDGTIRVWDLETGSKLCLKLLSGAEN 333 (456)
T ss_pred CCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEEECCCCCEEE-EcCCCccEEEEECCCCceeeeecccCCCC
Confidence 999999999999999999999865 5999999999999999999976555 77889999999999999 455554322
Q ss_pred --CeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCC---EEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC
Q 009059 392 --GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ---VHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 392 --~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~---I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~ 465 (545)
.+..+.|+|++.++++++.|+.+++||+..+..+..+.+|... +.+...++.+.++++|+ |+.|++||+.++
T Consensus 334 ~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-- 411 (456)
T KOG0266|consen 334 SAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-- 411 (456)
T ss_pred CCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc--
Confidence 4799999999999999999999999999999999999998875 34445578899999999 999999999886
Q ss_pred cceEEEEeeC-CCceEEEEEcCCCCEEEEEE--cCCeEEEEeCC
Q 009059 466 GECIHELSCT-GNKFHSCVFHPTFPSLLVIG--CYETLELWNMT 506 (545)
Q Consensus 466 ~~~i~~~~~~-~~~v~~~~~sp~~~~l~~~~--~dg~I~iwd~~ 506 (545)
..+..+.+| ...+..+.+++..+++++++ .|+.+++|...
T Consensus 412 -~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 412 -GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred -chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 667778888 88899999999999999998 67789999754
No 47
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=3.9e-32 Score=256.69 Aligned_cols=282 Identities=20% Similarity=0.341 Sum_probs=247.3
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe--EEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~--~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
...+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+.+.|.++++++++++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 35577899999999999998999999999999999987665 6788888899999999999999999999999999999
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
+..... ..++.+|++.|+++.|...... +++|+.|.+|++||+....|.+++-....+..+... ...++++..|+.
T Consensus 248 vd~~r~-~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~Dkk 323 (459)
T KOG0288|consen 248 VDSLRL-RHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKK 323 (459)
T ss_pred ccchhh-hhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccc
Confidence 998765 8899999999999999876544 669999999999999999999988877778888876 356788888999
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC----CCceEEEEEcCCC
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPTF 488 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~----~~~v~~~~~sp~~ 488 (545)
|++||.++..+......+. .|+++..++++..|.+++ |+++.++|+++. ...+.+... ....+.+.|+|++
T Consensus 324 vRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~---eI~~~~sA~g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK---EIRQTFSAEGFKCASDWTRVVFSPDG 399 (459)
T ss_pred eEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccc---cEEEEeeccccccccccceeEECCCC
Confidence 9999999999999888665 999999999999988888 999999999987 445544432 2347889999999
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEE-Eecc-CC-CCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 489 PSLLVIGCYETLELWNMTENKTL-TLSA-HD-KLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 489 ~~l~~~~~dg~I~iwd~~~~~~~-~~~~-h~-~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.|+++|+.||.|+||++.++++. .+.. +. ..|++++|+|.|..|++++.++.+.+|.
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999999999999987 3332 32 3699999999999999999999999994
No 48
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.9e-30 Score=233.07 Aligned_cols=264 Identities=22% Similarity=0.378 Sum_probs=218.8
Q ss_pred CcccceeeeeecCCceeeEEEEeec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCeEEEEeccCCccEEEEE
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVR 312 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~--~~~~~~~l~~h~~~V~~l~ 312 (545)
.+.|+.+|+|+...+..+....++. +|+..|.+++|+|.|++||+|+.|.++.||.-. .++++.++++|...|.|++
T Consensus 33 cg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Va 112 (312)
T KOG0645|consen 33 CGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVA 112 (312)
T ss_pred ecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEE
Confidence 4557889999988777777776664 799999999999999999999999999999765 4678899999999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCC--eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC---CCceeeEE
Q 009059 313 FSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVF 387 (545)
Q Consensus 313 ~sp~~~~l~t~s~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~---~~~~~~~~ 387 (545)
|+++|.+||+++.|+.|-||.+.... .+...+.+|...|..+.|+|.. .||++++.|.+|++|+-. .-+++.++
T Consensus 113 ws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl 191 (312)
T KOG0645|consen 113 WSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTL 191 (312)
T ss_pred EcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEe
Confidence 99999999999999999999998433 3567889999999999999984 577799999999999876 33566777
Q ss_pred ecc-CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC
Q 009059 388 KCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 388 ~~~-~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~ 465 (545)
..+ ..+.+++|++.|.++++++.|++|+||-..+.-. .-|...++.+.|. ...|++++ |+.|++|.-.....
T Consensus 192 ~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d 265 (312)
T KOG0645|consen 192 DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPD 265 (312)
T ss_pred cCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCC
Confidence 644 4799999999999999999999999998663311 1278899999998 45677776 99999998764311
Q ss_pred ---cc-eEEEEeeCCCceEEEEEcCC-CCEEEEEEcCCeEEEEeCC
Q 009059 466 ---GE-CIHELSCTGNKFHSCVFHPT-FPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 466 ---~~-~i~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~I~iwd~~ 506 (545)
.. ....-..|...|+++.|.|. ...|++++.||.|++|.+.
T Consensus 266 ~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 266 EPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 11 12234568889999999995 6779999999999999864
No 49
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=7.5e-31 Score=245.64 Aligned_cols=278 Identities=21% Similarity=0.327 Sum_probs=236.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC---CCEEEEEeCCCeEEEEECCCC
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENP 337 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~---~~~l~t~s~dg~I~vwd~~~~ 337 (545)
.|.+.|.++... +++|++|++||.+++||. .|+....+.+|.++|.+++|.-. ...|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488899999887 779999999999999996 57899999999999999988543 336999999999999999876
Q ss_pred Ceee---eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC-------------------------ceeeEEe-
Q 009059 338 DYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-------------------------SCAGVFK- 388 (545)
Q Consensus 338 ~~~~---~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~-------------------------~~~~~~~- 388 (545)
...+ ....||...|-++...+++. .+++|+.|..|++|+..+. .++-.+.
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 5422 33459999999999999975 5569999999999993211 0111222
Q ss_pred ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcc
Q 009059 389 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 467 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~ 467 (545)
|...|.++.|++ ...+++++.|.+|+.||++++..+..+.+ ...++|+.++|..++|++|+ |..|++||.+++....
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 345688999998 58899999999999999999998888874 67899999999999999999 9999999999987777
Q ss_pred eEEEEeeCCCceEEEEEcCCCCE-EEEEEcCCeEEEEeCCCCe-EE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 468 CIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENK-TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 468 ~i~~~~~~~~~v~~~~~sp~~~~-l~~~~~dg~I~iwd~~~~~-~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
....+.+|.+.|.++.|+|...+ |++++.|+++++||++..+ .+ .+.+|...|.++.|. ++.+|++||.|.+|+|+
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 88899999999999999998765 6778889999999999877 54 888999999999996 56799999999999997
Q ss_pred C
Q 009059 545 K 545 (545)
Q Consensus 545 d 545 (545)
+
T Consensus 416 ~ 416 (423)
T KOG0313|consen 416 K 416 (423)
T ss_pred c
Confidence 4
No 50
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=7.9e-33 Score=255.65 Aligned_cols=261 Identities=20% Similarity=0.388 Sum_probs=224.2
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
.+.+|.++++||..+-+ ..+.+.||++.|.|+.|. .+.|++|+.|.+|+|||+++++++.++-+|...|..+.|+
T Consensus 212 SGlrDnTikiWD~n~~~---c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ 286 (499)
T KOG0281|consen 212 SGLRDNTIKIWDKNSLE---CLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS 286 (499)
T ss_pred cccccCceEEeccccHH---HHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe
Confidence 56789999999987654 567889999999999996 5699999999999999999999999999999999999997
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCe--eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-C
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-S 391 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~ 391 (545)
. .++++++.|.+|.|||+..+.. +.+.+.||...|+.+.|+. .++++++.|.+|++|++.++++++++..+ .
T Consensus 287 n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~gHkR 361 (499)
T KOG0281|consen 287 N--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLNGHKR 361 (499)
T ss_pred C--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhhhcccc
Confidence 4 5999999999999999987653 2357789999999999983 47779999999999999999999998744 4
Q ss_pred CeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCc----
Q 009059 392 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG---- 466 (545)
Q Consensus 392 ~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~---- 466 (545)
+|.|+.+ .+..+++|++|.+|++||++.|.++..+++|+.-|.|+.| +.+.+++|. ||+|+|||+..+...
T Consensus 362 GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~ 437 (499)
T KOG0281|consen 362 GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPA 437 (499)
T ss_pred cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccc
Confidence 5666655 4477888889999999999999999999999999999999 456788888 999999999876432
Q ss_pred --ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 467 --ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 467 --~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
.|+..+..|.+.|..+.|.. ..|++++.|.+|.|||..++..-
T Consensus 438 ~~~Cl~~lv~hsgRVFrLQFD~--fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 438 STLCLRTLVEHSGRVFRLQFDE--FQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred cchHHHhhhhccceeEEEeecc--eEEEeccCCCeEEEEEcCCCCcc
Confidence 36666777889999999954 45899999999999999776544
No 51
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-29 Score=232.46 Aligned_cols=283 Identities=22% Similarity=0.297 Sum_probs=236.5
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC--CCeEEE
Q 009059 254 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRV 331 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~--dg~I~v 331 (545)
+..+.++.-.+.|+++.|+++|.+|++++.|..++|||..+++.+.++..+...|..++|......++.++. |.+||.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 334555666788999999999999999999999999999999999999988889999999887777777766 889999
Q ss_pred EECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC
Q 009059 332 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 332 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
.++.+.++ ++.|.||...|..|+.+|-++ .+++++.|++|++||++..+|...+.. ..-..++|.|.|-.++++...
T Consensus 85 Lsl~dNky-lRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~-~~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 85 LSLHDNKY-LRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNL-SGRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEeecCce-EEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEec-CCCcceeECCCCcEEEEecCC
Confidence 99999887 999999999999999999875 455999999999999998888877764 344568999997777777777
Q ss_pred CeEEEEECCCC--EEEEEec---CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCc---eEEE
Q 009059 412 NYISILDVETQ--VCRLKLQ---GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSC 482 (545)
Q Consensus 412 g~I~i~d~~~~--~~~~~~~---~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~---v~~~ 482 (545)
+.|++||++.- .+..++. +.....+.+.|+|+|++|+.+. .+.+++.|.-+| ....++..+... -..+
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G---~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG---TVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC---cEeeeEeeccCCCCcceeE
Confidence 79999999863 2333332 3467889999999999999888 779999999888 455555554433 3678
Q ss_pred EEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Eecc-CCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 483 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 483 ~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~-h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
.|.|+++++++|+.||+|.+|++++++.+ .+.+ +..++.++.|+|.-.++|+++. .+-+|
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw 300 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFW 300 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEE
Confidence 99999999999999999999999999888 6666 7899999999998877777754 56666
No 52
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=9.8e-31 Score=242.84 Aligned_cols=291 Identities=19% Similarity=0.300 Sum_probs=246.9
Q ss_pred CCccccCCceecccccCCccccccCCCCCCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 009059 207 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 286 (545)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~ 286 (545)
+..+.++..++.+-.+|+--+.|. ..+.|+++++||+.+|.. ..++.||...|..+++|+--.||++++.|+.
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~----tgs~DrtikIwDlatg~L---kltltGhi~~vr~vavS~rHpYlFs~gedk~ 216 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFA----TGSADRTIKIWDLATGQL---KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ 216 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEE----ecCCCceeEEEEcccCeE---EEeecchhheeeeeeecccCceEEEecCCCe
Confidence 344566777777777777644343 234689999999999963 5678899999999999999999999999999
Q ss_pred EEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEE
Q 009059 287 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 366 (545)
Q Consensus 287 I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s 366 (545)
|+.||++..+.++.+.+|-..|.|++.+|.-..|++|+.|.+++|||+++.. .+..+.+|..+|..+.+.|....++ +
T Consensus 217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dpqvi-t 294 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDPQVI-T 294 (460)
T ss_pred eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCCceE-E
Confidence 9999999999999999999999999999999999999999999999999866 4899999999999999998876666 9
Q ss_pred EcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCC
Q 009059 367 CDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 445 (545)
Q Consensus 367 ~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~ 445 (545)
|+.|++|++||++.++...++.++ ..+.+++.+|... +++.+....|+-|++..+..+..+.+|..-|++++...||-
T Consensus 295 ~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~-~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v 373 (460)
T KOG0285|consen 295 GSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKEN-LFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGV 373 (460)
T ss_pred ecCCceEEEeeeccCceeEeeecccceeeEEecCCchh-hhhccCCccceeccCCccchhhccccccceeeeeeeccCce
Confidence 999999999999999988877654 4589999999854 44555556799999999999999999999999999988876
Q ss_pred EEEEEeCCcEEEEEcCCCCCcceEEEEe-----eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 446 YLASVSDELVRVWSIGSGSKGECIHELS-----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 446 ~l~s~sdg~I~vwd~~~~~~~~~i~~~~-----~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
+++.+..|.+.+||.+++.......++. .....|++.+|...+..|+++..|.+|++|.-.+
T Consensus 374 ~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred EEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 6555558899999999986655443332 2346789999999999999999999999997544
No 53
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=8.2e-31 Score=233.25 Aligned_cols=277 Identities=21% Similarity=0.346 Sum_probs=228.0
Q ss_pred EEEEEcC-CCCEEEEEe-------CCCcEEEEEcCCCeEEEEe--ccCCccEEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q 009059 267 ESCHFSP-DGKLLATGG-------HDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 267 ~~l~~sp-dg~~latg~-------~dg~I~lwd~~~~~~~~~l--~~h~~~V~~l~~sp~-~~~l~t~s~dg~I~vwd~~ 335 (545)
.++.||| -..+||++. ..|++.|-++...+-+..+ ..-.+.+.+++|+++ .+.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 4688999 223444332 3688999998644444333 235678999999995 5688999999999999998
Q ss_pred CCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC-CeeEEEEeCC-CCEEEEEECCCe
Q 009059 336 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPR-LGRILAAAIENY 413 (545)
Q Consensus 336 ~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~-~v~~l~~sp~-~~~l~~~~~dg~ 413 (545)
....++..++.|..+|.++.|++..+..+++++.|++|++|+......+.++..+. .|....|+|. .+.+++++.|+.
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 88888999999999999999999888888899999999999999999999887554 4889999995 566777888999
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC-CE
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PS 490 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~-~~ 490 (545)
+++||++..-....+..|...|.|+.|+... ..|++|+ |+.|++||++.-. ..+.++.+|.-.|+.+.|+|.. ..
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhhH
Confidence 9999998754445588899999999999854 5677777 9999999999765 5688889999999999999976 45
Q ss_pred EEEEEcCCeEEEEeCCCCeEE--EeccCCCCeeEEEEeCC-CCEEEEEeCCCcEEEcC
Q 009059 491 LLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTV-NGMVASASHDKCVKIWK 545 (545)
Q Consensus 491 l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd-~~~las~s~Dg~I~iWd 545 (545)
|++++.|-+++|||.....-. +...|...|..+.|++- ..++|+++.|+.++||+
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 777788889999999855443 56678999999999874 56999999999999996
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=2e-29 Score=245.24 Aligned_cols=258 Identities=31% Similarity=0.537 Sum_probs=229.9
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~ 318 (545)
+..+++|+...+. ....+..|...|.++.|++++++|++++.|+.|++|++.+++.+..+..|...|.++.|++++.
T Consensus 30 ~g~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 106 (289)
T cd00200 30 DGTIKVWDLETGE---LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR 106 (289)
T ss_pred CcEEEEEEeeCCC---cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCC
Confidence 5678888887664 3556778999999999999999999999999999999999888888999999999999999988
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC-CeeEEE
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMR 397 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~-~v~~l~ 397 (545)
++++++.|+.|++||+.+.+. ...+..|...|.+++|+|++ .++++++.++.|++||+++++.+..+..+. .+.++.
T Consensus 107 ~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 184 (289)
T cd00200 107 ILSSSSRDKTIKVWDVETGKC-LTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVA 184 (289)
T ss_pred EEEEecCCCeEEEEECCCcEE-EEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeEecCccccceEE
Confidence 999988899999999986654 67777899999999999984 566677779999999999888887776544 799999
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC
Q 009059 398 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 476 (545)
Q Consensus 398 ~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~ 476 (545)
|+|++..+++++.++.|++||++.++.+..+..|...+.+++|++++.++++++ |+.|++||+.++ ..+..+..+.
T Consensus 185 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~ 261 (289)
T cd00200 185 FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHT 261 (289)
T ss_pred ECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEccccC
Confidence 999988999999999999999999998888888999999999999999999999 999999999876 5666777888
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 477 NKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 477 ~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
..+.++.|++++.+|++++.|+.|++|+
T Consensus 262 ~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 262 NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 8999999999999999999999999996
No 55
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=6.3e-30 Score=232.81 Aligned_cols=286 Identities=20% Similarity=0.306 Sum_probs=236.3
Q ss_pred CccccCCceecccccCCccccccCCCCCCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 009059 208 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 287 (545)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I 287 (545)
-.+.++...+.+.-|.++-.+|. ..+.|..+-+|++... .+.+-.+++|++.|..+.|.+|+..|++++.|++|
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~a----SgG~Dr~I~LWnv~gd--ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v 114 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFA----SGGSDRAIVLWNVYGD--CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTV 114 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEe----ecCCcceEEEEecccc--ccceeeeccccceeEeeeeccCCCEEEEecCCceE
Confidence 33444555555555555444444 3445777778875432 23456678999999999999999999999999999
Q ss_pred EEEEcCCCeEEEEeccCCccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEE
Q 009059 288 VLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 366 (545)
Q Consensus 288 ~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~-~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s 366 (545)
+.||.++|+.++.+++|...|+.+.-+.-| .++.+++.||+++|||++.... ++++. ....++++.|...+...+ +
T Consensus 115 ~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~t~~-~kyqltAv~f~d~s~qv~-s 191 (338)
T KOG0265|consen 115 RGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IKTFE-NKYQLTAVGFKDTSDQVI-S 191 (338)
T ss_pred EEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-hhccc-cceeEEEEEeccccccee-e
Confidence 999999999999999999999999854434 4677889999999999997653 66654 456899999999887766 9
Q ss_pred EcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECCCeEEEEECCC----CEEEEEecCCC----CCEEE
Q 009059 367 CDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVET----QVCRLKLQGHK----NQVHS 437 (545)
Q Consensus 367 ~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~----~~~~~~~~~h~----~~I~~ 437 (545)
|+-|+.|++||++......++..+ ..|+.+..+++|.++++-+.|.++++||++- ..++..+.+|. .....
T Consensus 192 ggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 192 GGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred ccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 999999999999999999988754 5699999999999999999999999999984 35577777653 24567
Q ss_pred EEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 438 VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 438 l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
++|+|++.++.+|+ |..+++||.... .++..+.+|.+.|.++.|+|...+|++++.|.+|++=++
T Consensus 272 cswsp~~~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 272 CSWSPNGTKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred eeccCCCCccccccccceEEEeecccc---cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 89999999999999 999999998776 789999999999999999999999999999999987543
No 56
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.6e-30 Score=237.21 Aligned_cols=286 Identities=25% Similarity=0.411 Sum_probs=238.5
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC------------------CeEEEEeccCCccEEEEEEcCC
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~------------------~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
+-..+..|+.++.+.+|++||.++|+|+.|..|+|.|++. .-.++++..|.+.|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 3466788999999999999999999999999999999861 1356788899999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCe--eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe----cc
Q 009059 317 LSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQ 390 (545)
Q Consensus 317 ~~~l~t~s~dg~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~----~~ 390 (545)
..+|++++.|++|++||+..... ..+.+. ...+|.++.|+|.|+.++ .|.....+++||+++.+|..... +.
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCcccccc
Confidence 99999999999999999975432 122232 456899999999987666 78888899999999988765443 44
Q ss_pred CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC-CC-CCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcc
Q 009059 391 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 467 (545)
Q Consensus 391 ~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-h~-~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~ 467 (545)
+.|+++.+++.++.+++++.||.|++||--+++++.++.. |. ..|.+..|..+|+||++.+ |..+++|.+.++ .
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---R 338 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG---R 338 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---c
Confidence 5699999999999999999999999999999999888754 54 4789999999999999988 999999999998 7
Q ss_pred eEEEEeeCCCc-----eEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEE--EeccCCCCeeEEEEeCCCCEEEEEeCCC
Q 009059 468 CIHELSCTGNK-----FHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 468 ~i~~~~~~~~~-----v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd~~~las~s~Dg 539 (545)
++.++.+.+.. -+...|.....+++.-... +.+.-||.++...+ --.+|.+.+..+.-+|.+.-+++|+.|-
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 77777755211 2344566666666665543 48999999988777 3348999999999999999999999999
Q ss_pred cEEEcC
Q 009059 540 CVKIWK 545 (545)
Q Consensus 540 ~I~iWd 545 (545)
.+++|.
T Consensus 419 raRFWy 424 (430)
T KOG0640|consen 419 RARFWY 424 (430)
T ss_pred eeeeee
Confidence 999993
No 57
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.5e-30 Score=264.14 Aligned_cols=247 Identities=21% Similarity=0.321 Sum_probs=206.7
Q ss_pred EEEEeec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC--------------------------------------
Q 009059 254 TEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------------------------------------- 294 (545)
Q Consensus 254 ~~~~~l~-~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~-------------------------------------- 294 (545)
...+.+. +|.+.|+++.||+||+|||+||.|+.|+||.+..
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 3445566 9999999999999999999999999999997543
Q ss_pred ----------------------CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEE
Q 009059 295 ----------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 352 (545)
Q Consensus 295 ----------------------~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~ 352 (545)
-+++..+.+|.+.|.+|.|+.+ .+|++++.|.+||+|++.... ++..|. |.+.|+
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~-CL~~F~-HndfVT 413 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE-CLKVFS-HNDFVT 413 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc-eeeEEe-cCCeeE
Confidence 0112235689999999999965 589999999999999999655 588887 999999
Q ss_pred EEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC--
Q 009059 353 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-- 430 (545)
Q Consensus 353 ~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-- 430 (545)
|++|+|..+.+|++|+-||.|+||+|...+.+.-.....-|++++|.|+|+..++|+.+|.+++|+....+....+.-
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 999999888999999999999999999999988888888899999999999999999999999999998776554321
Q ss_pred C------CCCEEEEEEcCCC--CEEEEEeCCcEEEEEcCCCCCcceEEEEeeCC--CceEEEEEcCCCCEEEEEEcCCeE
Q 009059 431 H------KNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHPTFPSLLVIGCYETL 500 (545)
Q Consensus 431 h------~~~I~~l~~sp~g--~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~--~~v~~~~~sp~~~~l~~~~~dg~I 500 (545)
| ...|+.+.|.|.. ++|++..|..|+|||.+.. ..+..+++.. ..-....|+.+|++|++++.|..|
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWV 570 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCCEEEEeecCceE
Confidence 1 2279999998754 3777777999999999766 4455555433 334567899999999999999999
Q ss_pred EEEeCC
Q 009059 501 ELWNMT 506 (545)
Q Consensus 501 ~iwd~~ 506 (545)
+||++.
T Consensus 571 YiW~~~ 576 (712)
T KOG0283|consen 571 YIWKND 576 (712)
T ss_pred EEEeCC
Confidence 999973
No 58
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.5e-28 Score=256.17 Aligned_cols=249 Identities=16% Similarity=0.209 Sum_probs=203.7
Q ss_pred EeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCe-------eeeEeccCcccEE
Q 009059 281 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVM 352 (545)
Q Consensus 281 g~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~-~~~l~t~s~dg~I~vwd~~~~~~-------~~~~~~~h~~~V~ 352 (545)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.+... ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667889999998888888899999999999999996 78999999999999999976431 2446788999999
Q ss_pred EEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCC
Q 009059 353 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK 432 (545)
Q Consensus 353 ~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~ 432 (545)
+++|+|++..++++++.|+.|++||+++++.+..+.+...+.+++|+++|..|++++.|+.|+|||+++++.+..+.+|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 99999998888889999999999999999888777777789999999999999999999999999999999999999998
Q ss_pred CCEEEE-----EEcCCCCEEEEEe-CC----cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE
Q 009059 433 NQVHSV-----CWNTSGEYLASVS-DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 502 (545)
Q Consensus 433 ~~I~~l-----~~sp~g~~l~s~s-dg----~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i 502 (545)
+.+.+. .|++++.+|++++ |+ .|+|||++..........+..+...+......+++.++++|..|+.|++
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 765433 3458888888876 54 7999999864322222233333344444555667888999999999999
Q ss_pred EeCCCCeEEEe--ccCCCCeeEEEEeCCC
Q 009059 503 WNMTENKTLTL--SAHDKLVSSLAASTVN 529 (545)
Q Consensus 503 wd~~~~~~~~~--~~h~~~V~~l~~spd~ 529 (545)
|++..+....+ ..+..++.+++|.|..
T Consensus 290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEccCCcEEeecccccCCCccceEEcccc
Confidence 99988765433 2466788899999965
No 59
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=6e-30 Score=247.71 Aligned_cols=287 Identities=17% Similarity=0.261 Sum_probs=231.9
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE----EEEe-ccCCccEEEEEEcCCCCEEEEEeCCCeEE
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTL-EEHTQWITDVRFSPSLSRLATSSADRTVR 330 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~----~~~l-~~h~~~V~~l~~sp~~~~l~t~s~dg~I~ 330 (545)
-..+++|+..|.++++.|.|-.|++|+.|..|++||+..... .+.+ ......|.++.|++.+..|++.+.....+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 356889999999999999999999999999999999864322 1222 22345699999999999999999999999
Q ss_pred EEECCCCCee-----------eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc-eeeEEecc------CC
Q 009059 331 VWDTENPDYS-----------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQ------SG 392 (545)
Q Consensus 331 vwd~~~~~~~-----------~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~-~~~~~~~~------~~ 392 (545)
|+|-...... +..-++|...++|.+|+|.....|++|+.||++++||+.+.+ .+..++.. -.
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 9997643220 123458999999999999988888899999999999998654 33444422 24
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEE---EEEecCCCC--CEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCc
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVC---RLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 466 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~---~~~~~~h~~--~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~ 466 (545)
++.++|++++..|++|+.||.|.+|+...... ...-..|.. .|+||.|+++|++|++-+ |+++++||++..+
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k-- 397 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK-- 397 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc--
Confidence 78999999999999999999999999865422 233455777 999999999999999988 9999999999765
Q ss_pred ceEEEEee--CCCceEEEEEcCCCCEEEEEEc------CCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeC
Q 009059 467 ECIHELSC--TGNKFHSCVFHPTFPSLLVIGC------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH 537 (545)
Q Consensus 467 ~~i~~~~~--~~~~v~~~~~sp~~~~l~~~~~------dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~ 537 (545)
+++....+ ...+-+.|+|+|+.+.|++|.+ .+.+.+||..+...+ .+.-....|..+.|+|.-+.|..|+.
T Consensus 398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsg 477 (641)
T KOG0772|consen 398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSG 477 (641)
T ss_pred cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecC
Confidence 44444333 3445688999999999998865 358999999988877 55556788999999999999999999
Q ss_pred CCcEEEc
Q 009059 538 DKCVKIW 544 (545)
Q Consensus 538 Dg~I~iW 544 (545)
||+++||
T Consensus 478 dG~~~vy 484 (641)
T KOG0772|consen 478 DGTAHVY 484 (641)
T ss_pred CCceEEE
Confidence 9999986
No 60
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=2.4e-31 Score=256.17 Aligned_cols=248 Identities=18% Similarity=0.299 Sum_probs=220.0
Q ss_pred CeEEEEeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcE
Q 009059 295 FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 373 (545)
Q Consensus 295 ~~~~~~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I 373 (545)
.+.+..+.+|+..|+++.|.| .+.+|++++.|+.|+||++.....++++|.+|..+|.+++|+++|..++ +++.|+.|
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sfD~~l 282 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFL-SASFDRFL 282 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeee-eeecceee
Confidence 356678899999999999999 8999999999999999999886777999999999999999999998777 99999999
Q ss_pred EEEECCCCceeeEEeccCCeeEEEEeCCC-CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-
Q 009059 374 RYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 451 (545)
Q Consensus 374 ~lwd~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s- 451 (545)
++||+++|+++..+.....++++.|.|++ +.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+.+++.+
T Consensus 283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999999999999999999999999998 7888999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE----EeccCC--CCeeEEEE
Q 009059 452 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLSAHD--KLVSSLAA 525 (545)
Q Consensus 452 dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~----~~~~h~--~~V~~l~~ 525 (545)
|+.++||+.+.+.....+.. .......+|..+|+++++++-+.|+.|.+|.+...-.+ .+.+|. +.-..+.|
T Consensus 363 dks~riWe~~~~v~ik~i~~--~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIAD--PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred CccEEEEEcCCCccchhhcc--hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 88999999987743333322 23445678999999999999999999999987554333 566775 55677899
Q ss_pred eCCCCEEEEEeCCCcEEEcC
Q 009059 526 STVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 526 spd~~~las~s~Dg~I~iWd 545 (545)
||||++|++|+.||.+.+||
T Consensus 441 SpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred cCCCCeEEeecCCccEEEee
Confidence 99999999999999999997
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=2.9e-29 Score=260.67 Aligned_cols=270 Identities=24% Similarity=0.429 Sum_probs=241.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEE-eccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 339 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~-l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~ 339 (545)
.|...|.|..|. ..++++++.|.+|++||..++..+.. +.+|.+.|++++|..-+.+|++|+.|.+++|||..++.+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 467788999998 45899999999999999999999988 999999999999987788999999999999999988774
Q ss_pred eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEE
Q 009059 340 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILD 418 (545)
Q Consensus 340 ~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d 418 (545)
...+.+|.+.|.++...+ .++++|+.|.+|++|++.++.++..+. +...|.++.++ +..+++|+.|+.|.+||
T Consensus 284 -~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 284 -THSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred -EEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 999999999999999874 466688999999999999999999999 77889999998 68999999999999999
Q ss_pred CCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC
Q 009059 419 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 497 (545)
Q Consensus 419 ~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d 497 (545)
+.++++++.+.+|...|.++.+... .++++|+ |+.|++||+++.. .|+..+..|..-+..+.+ .+++|++++.|
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD 432 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSSSAD 432 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEecccc
Confidence 9999999999999999999988765 8888888 9999999998764 788899999888865554 56679999999
Q ss_pred CeEEEEeCCCCeEE-Eecc-CCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 498 ETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 498 g~I~iwd~~~~~~~-~~~~-h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+.|++||..+++++ .+.+ |...|.++++. ...+++++.||.+++||
T Consensus 433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 433 GTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred ccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99999999999998 5666 66889888876 56789999999999997
No 62
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=223.30 Aligned_cols=258 Identities=23% Similarity=0.310 Sum_probs=225.4
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
..+.|+++|+|+...|. .++++.+|...|..++.+.|...+++|+.|+.|.+||+++|+.++.+.+|.+.|+.++|+
T Consensus 34 tcGsdrtvrLWNp~rg~---liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN 110 (307)
T KOG0316|consen 34 TCGSDRTVRLWNPLRGA---LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN 110 (307)
T ss_pred EcCCCceEEeecccccc---eeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEec
Confidence 45668999999998886 578899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCC-eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCe
Q 009059 315 PSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA 393 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~-~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v 393 (545)
.+...+++|+.|.++++||.++.. .+++.+......|.++... +..+++|+.||+++.||++.|.....+- ..+|
T Consensus 111 eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~-g~pi 186 (307)
T KOG0316|consen 111 EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYF-GHPI 186 (307)
T ss_pred CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhc-CCcc
Confidence 999999999999999999998654 3677888888999999987 4567799999999999999988765543 3689
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEE--EEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEE
Q 009059 394 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH--SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~--~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~ 470 (545)
++++|+++++..++++.|+.|++.|-++|+.+..+++|...-. ..+++.....+++|+ ||.|++||+... ..+.
T Consensus 187 t~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---~~~s 263 (307)
T KOG0316|consen 187 TSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---TQIS 263 (307)
T ss_pred eeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc---eeee
Confidence 9999999999999999999999999999999999999987544 456777788999999 999999999877 6677
Q ss_pred EEeeCCCc-eEEEEEcCCCCEEEEEEcCCeEEEE
Q 009059 471 ELSCTGNK-FHSCVFHPTFPSLLVIGCYETLELW 503 (545)
Q Consensus 471 ~~~~~~~~-v~~~~~sp~~~~l~~~~~dg~I~iw 503 (545)
.+..+... +..+.++|....|+++...+ +.+|
T Consensus 264 k~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~ 296 (307)
T KOG0316|consen 264 KLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFW 296 (307)
T ss_pred eeccCCceeEEeeecccCccceeEecCCc-eece
Confidence 77766666 89999999988777776554 4444
No 63
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=2.8e-29 Score=238.61 Aligned_cols=277 Identities=25% Similarity=0.367 Sum_probs=244.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 342 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~ 342 (545)
...|+++...+....+++|+.|..+.++|....+.+..++||...|+.+.|+++...+++++.|..|+||....... ..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-~~ 297 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-PT 297 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC-cc
Confidence 35688888888878999999999999999999999999999999999999999999999999999999999987664 67
Q ss_pred EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc---CCeeEEEEeCCCCEEEEEECCCeEEEEEC
Q 009059 343 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISILDV 419 (545)
Q Consensus 343 ~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~---~~v~~l~~sp~~~~l~~~~~dg~I~i~d~ 419 (545)
....|..+|+.+..+|.|++++ +++.|++..+.|++++.++...... -.+++..|+|||..|.+|..|+.|+|||+
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred ccccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 7788999999999999998777 8899999999999999988877654 24899999999999999999999999999
Q ss_pred CCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEee-CCCceEEEEEcCCCCEEEEEEcC
Q 009059 420 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCY 497 (545)
Q Consensus 420 ~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~-~~~~v~~~~~sp~~~~l~~~~~d 497 (545)
.++..+..|.+|.++|..|.|+.+|.||++++ |+.|++||++.... +.++.. ....+.++.|.+.|.+|++++.+
T Consensus 377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n---~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN---FKTIQLDEKKEVNSLSFDQSGTYLGIAGSD 453 (506)
T ss_pred CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc---cceeeccccccceeEEEcCCCCeEEeecce
Confidence 99999999999999999999999999999999 77899999998743 333332 23479999999999999999887
Q ss_pred CeEEEEeCCCCe--EE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 498 ETLELWNMTENK--TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 498 g~I~iwd~~~~~--~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
=.|++++-.+.. ++ .+..|.+..+++.|.....++++++.|..++|+
T Consensus 454 l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 454 LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred eEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 788888755443 33 566788899999999999999999999998886
No 64
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=7.8e-31 Score=244.04 Aligned_cols=279 Identities=17% Similarity=0.318 Sum_probs=234.9
Q ss_pred EEeecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 256 FQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg-~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+...++..+++.|.+.|..|++.. ..+++++.|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 56679999999999999976 6899999999999999999999999999999999999976 67899999999999998
Q ss_pred CCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC-CeeEEEEeCCCCEEEEE-ECCC
Q 009059 335 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAA-AIEN 412 (545)
Q Consensus 335 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~~~-~~dg 412 (545)
+.+ +++++.+ ...+..|.-+.. ...+++|+. .|.|||.....++..+.... .+.++.|+|....++++ +.|+
T Consensus 137 ~~~--p~~tilg-~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr 210 (433)
T KOG0268|consen 137 DGP--PLHTILG-KSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR 210 (433)
T ss_pred cCC--cceeeec-cccccccccccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC
Confidence 863 4666664 446777776654 456778864 59999999888888887544 48999999976665554 4899
Q ss_pred eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEE
Q 009059 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 491 (545)
Q Consensus 413 ~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l 491 (545)
.|.+||+++..++..+. -.-.-+.|+|+|.+..+++++ |..++.||++... ..+....+|...|..+.|+|.|..+
T Consensus 211 sIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 211 SIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred ceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCCcchh
Confidence 99999999998877654 234557899999777777777 8899999998654 6677888999999999999999999
Q ss_pred EEEEcCCeEEEEeCCCCeEEEec--cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 492 LVIGCYETLELWNMTENKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 492 ~~~~~dg~I~iwd~~~~~~~~~~--~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++|+.|.+|+||..+.+....+. .--..|.++.||.|.+|+++||+|+.|++|+
T Consensus 288 vsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred ccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 99999999999999888765332 2235699999999999999999999999996
No 65
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.3e-30 Score=231.40 Aligned_cols=251 Identities=20% Similarity=0.264 Sum_probs=227.5
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 254 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
.-+.++.+|.+.|+.+.+..+....|+++.|-+.+|||.-+|..+..+. |..-|..++|+.|.++|++|+.+..+||||
T Consensus 50 dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfd 128 (334)
T KOG0278|consen 50 DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFD 128 (334)
T ss_pred CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhh
Confidence 3578899999999999999999999999999999999999999998885 889999999999999999999999999999
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
++..+.+...+.+|.+.|..+.|......+| +...|++||+||.+++..+..+....+++++.++++ +.+++.+..+.
T Consensus 129 ln~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~d-G~ilTia~gss 206 (334)
T KOG0278|consen 129 LNRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQD-GRILTIAYGSS 206 (334)
T ss_pred ccCCCCCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCCCcceeeccC-CCEEEEecCce
Confidence 9999888999999999999999988766666 778899999999999999999999999999999999 56777778899
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEE-eeCCCceEEEEEcCCCCEE
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSL 491 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~-~~~~~~v~~~~~sp~~~~l 491 (545)
|.+||..+...++.++ -...|.+...+|+..++++|+ |..++.||+.++ ..+..+ ++|.++|.|+.|+|+|...
T Consensus 207 V~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg---eEi~~~nkgh~gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 207 VKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG---EEIGSYNKGHFGPVHCVRFSPDGELY 282 (334)
T ss_pred eEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCC---ceeeecccCCCCceEEEEECCCCcee
Confidence 9999999988888776 467899999999998888888 889999999998 445454 7899999999999999999
Q ss_pred EEEEcCCeEEEEeCCCCeEE
Q 009059 492 LVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 492 ~~~~~dg~I~iwd~~~~~~~ 511 (545)
++|+.||+|++|.+.-++..
T Consensus 283 AsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 283 ASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eccCCCceEEEEEecCCCch
Confidence 99999999999998766543
No 66
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.2e-29 Score=242.00 Aligned_cols=276 Identities=19% Similarity=0.275 Sum_probs=239.3
Q ss_pred CCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 009059 263 TSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 341 (545)
Q Consensus 263 ~~~V~~l~~spdg~~-latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~ 341 (545)
.+.|.+++|+|...+ +|+.+ .-.+.||+..+......+.-....|.++.|..||++|++|...|.|+|||+.+ ...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH
Confidence 357999999995443 44443 35899999998888888877889999999999999999999999999999665 4458
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCC-EEEEEECCCeEEEEEC
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG-RILAAAIENYISILDV 419 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~-~l~~~~~dg~I~i~d~ 419 (545)
+.+.+|..+|..+.|+|.++.++++|++|+.+++||+.+......+. +...|.+.+|+|... .+++|+.||.|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 89999999999999999999999999999999999999888643443 455699999999755 5778888999999999
Q ss_pred CCC-EEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC
Q 009059 420 ETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 498 (545)
Q Consensus 420 ~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 498 (545)
+.. ..+.++. |..+|..+.+-|.|..+++++...|+|||+.++. ..+..+..|...|+|+.+..++..|++++-|+
T Consensus 184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 987 6666665 9999999999999999999999999999998764 34445555999999999999999999999999
Q ss_pred eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 499 TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 499 ~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
.+++||+.+.+.+.-....++|.+|+.+|++..++.|-.||.+.+
T Consensus 261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 999999999888866678899999999999999999999998754
No 67
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5.7e-29 Score=226.75 Aligned_cols=274 Identities=18% Similarity=0.298 Sum_probs=226.3
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC-CeEE-EEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 009059 260 PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 336 (545)
Q Consensus 260 ~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~-~~~~-~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~ 336 (545)
..-.+.|.+|+||| ...+|+.++.|++||+|+++. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 34567899999999 555677899999999999976 3333 45567999999999999999999999999999999998
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCC-cEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEE
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~-~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
+. +..+..|.++|.++.|-+... .+|++|+.|.+|++||++....+.++..++.+.++..-. ..++++..+..|.
T Consensus 104 ~Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~r~i~ 179 (347)
T KOG0647|consen 104 GQ--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY--PMAVVATAERHIA 179 (347)
T ss_pred CC--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC--ceeEEEecCCcEE
Confidence 85 677888999999999987543 478899999999999999999999999988888877654 5688888999999
Q ss_pred EEECCCCEEEEE-e-cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC---------CceEEEE
Q 009059 416 ILDVETQVCRLK-L-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---------NKFHSCV 483 (545)
Q Consensus 416 i~d~~~~~~~~~-~-~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~---------~~v~~~~ 483 (545)
+|+++++..... . ..-+-.+.||+..++....+.|+ +|.+.|..+..+.. ..-.++++|. ..|++++
T Consensus 180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 180 VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceE
Confidence 999987643321 1 12334688999988888888898 99999999987643 3444566665 2478899
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEE-eCC
Q 009059 484 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA-SHD 538 (545)
Q Consensus 484 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~-s~D 538 (545)
|+|....|+++|+||++.+||-.....+ ....|..+|++.+|+.+|.++|-+ ++|
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 9999999999999999999999877666 667899999999999999988754 444
No 68
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.2e-29 Score=249.56 Aligned_cols=267 Identities=22% Similarity=0.389 Sum_probs=231.6
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEecc-C
Q 009059 269 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG-H 347 (545)
Q Consensus 269 l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~-h 347 (545)
+.|+. ...||+|. ...|++|+..+++.......+...|+++.|+++|.+|++|..+|.|.|||..+.+. ++.+.+ |
T Consensus 183 ldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-~~~~~~~h 259 (484)
T KOG0305|consen 183 LDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-TRTLRGSH 259 (484)
T ss_pred hhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-cccccCCc
Confidence 67773 45777775 45899999999887766666689999999999999999999999999999998765 777777 9
Q ss_pred cccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeE-Ee-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEE
Q 009059 348 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 425 (545)
Q Consensus 348 ~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~-~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~ 425 (545)
...|.+++|. ..++.+|+.|+.|..+|++..+.... +. |...|..+.|++++.++++|+.|+.+.|||.....+.
T Consensus 260 ~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 260 ASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred CceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 9999999998 45777999999999999998765544 43 4566999999999999999999999999999888999
Q ss_pred EEecCCCCCEEEEEEcCC-CCEEEEEe---CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc--CCe
Q 009059 426 LKLQGHKNQVHSVCWNTS-GEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YET 499 (545)
Q Consensus 426 ~~~~~h~~~I~~l~~sp~-g~~l~s~s---dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~--dg~ 499 (545)
..+..|...|..++|+|- ..+||+|+ |++|++||..++ ..+..+. ....|.++.|++..+.|+++-. ++.
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g---~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG---ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC---cEecccc-cCCceeeEEEcCCCCEEEEecCCCCCc
Confidence 999999999999999995 46788776 889999999987 4555444 4678999999999988887654 448
Q ss_pred EEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 500 LELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 500 I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|.||+..+.+.+ .+.+|...|..++++|||..|++|+.|.++++|+
T Consensus 413 i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 413 ITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred EEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 999999998777 7889999999999999999999999999999996
No 69
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=5.5e-28 Score=250.83 Aligned_cols=264 Identities=15% Similarity=0.215 Sum_probs=209.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE-------------EEeccCCccEEEEEEcC-CCCEEEEEeCCCeE
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-------------STLEEHTQWITDVRFSP-SLSRLATSSADRTV 329 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~-------------~~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I 329 (545)
..|....+++|+..+++++.+..+..|+...+..+ ..+.+|.+.|++++|+| ++.+|++|+.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 44556667777666677777777777775443322 13678999999999999 88899999999999
Q ss_pred EEEECCCCC------eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCC
Q 009059 330 RVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRL 402 (545)
Q Consensus 330 ~vwd~~~~~------~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~ 402 (545)
++||+.+.. .++..+.+|...|.+++|+|++..+|++++.|+.|++||+.+++.+..+. +...|.+++|+|++
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence 999997643 24667889999999999999877788899999999999999998888776 45679999999999
Q ss_pred CEEEEEECCCeEEEEECCCCEEEEEecCCCCC-EEEEEEcCCCCEEEEEe-----CCcEEEEEcCCCCCcceEEEEee-C
Q 009059 403 GRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCWNTSGEYLASVS-----DELVRVWSIGSGSKGECIHELSC-T 475 (545)
Q Consensus 403 ~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~-I~~l~~sp~g~~l~s~s-----dg~I~vwd~~~~~~~~~i~~~~~-~ 475 (545)
..|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++ |+.|++||+++... .+..... .
T Consensus 181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~d~ 258 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDLDQ 258 (493)
T ss_pred CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEeccCC
Confidence 99999999999999999999999999888765 45778998877776643 67999999987542 3333322 2
Q ss_pred CCceEEEEEcCCCCEEEEEE-cCCeEEEEeCCCCeEEEe--ccCCCCeeEEEEeCCC
Q 009059 476 GNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTL--SAHDKLVSSLAASTVN 529 (545)
Q Consensus 476 ~~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~~spd~ 529 (545)
...+....|++++..|++++ .|+.|++||+.+++.+.. ..+..++..++|.|.-
T Consensus 259 ~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 259 SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 34566678999999999888 499999999999887732 2455677888888743
No 70
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-28 Score=251.39 Aligned_cols=259 Identities=23% Similarity=0.413 Sum_probs=221.7
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~ 318 (545)
...+++||-.-+- .+..|..|.++|..++|+|...++++||.|.+|+||+..+.+++.++.+|-+.|..+.|++.-.
T Consensus 30 sG~IQlWDYRM~t---li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyP 106 (1202)
T KOG0292|consen 30 SGVIQLWDYRMGT---LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYP 106 (1202)
T ss_pred Cceeeeehhhhhh---HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCc
Confidence 3567888866554 3556789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc----------------
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---------------- 382 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~---------------- 382 (545)
+|+++|.|.+|+||++.+.++ +..+.||...|+|..|+|.. .++++++-|-+||+||+..-+
T Consensus 107 WIlSASDDQTIrIWNwqsr~~-iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~ 184 (1202)
T KOG0292|consen 107 WILSASDDQTIRIWNWQSRKC-IAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ 184 (1202)
T ss_pred eEEEccCCCeEEEEeccCCce-EEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhcc
Confidence 999999999999999998775 99999999999999999984 577799999999999985311
Q ss_pred -----------ee--eEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCE--EEEEecCCCCCEEEEEEcCCCCE
Q 009059 383 -----------CA--GVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEY 446 (545)
Q Consensus 383 -----------~~--~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~--~~~~~~~h~~~I~~l~~sp~g~~ 446 (545)
++ ..+. |..+|+.++|+|.-..+++|+.|..|++|.....+ .+-+..+|...|.++-|+|...+
T Consensus 185 ~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~l 264 (1202)
T KOG0292|consen 185 QGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDL 264 (1202)
T ss_pred ccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccce
Confidence 01 1111 34568999999998999999999999999987543 35567899999999999999999
Q ss_pred EEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 447 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 447 l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
+++.+ |+.|+|||+... ..+.++.......+.++.+|..+ |++++.|+.+.+|.++
T Consensus 265 IlSnsEDksirVwDm~kR---t~v~tfrrendRFW~laahP~lN-LfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 265 ILSNSEDKSIRVWDMTKR---TSVQTFRRENDRFWILAAHPELN-LFAAGHDSGMIVFKLE 321 (1202)
T ss_pred eEecCCCccEEEEecccc---cceeeeeccCCeEEEEEecCCcc-eeeeecCCceEEEEEc
Confidence 99999 999999999776 77888888889999999999998 4555555555566554
No 71
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.8e-29 Score=255.84 Aligned_cols=246 Identities=19% Similarity=0.334 Sum_probs=203.1
Q ss_pred eEEEEec-cCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC--------------------------------CC----
Q 009059 296 TVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--------------------------------PD---- 338 (545)
Q Consensus 296 ~~~~~l~-~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~--------------------------------~~---- 338 (545)
.....+. .|.+.|+++.|++||+|||+|+.|+.|+||.+.. ..
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 3344555 8999999999999999999999999999998764 00
Q ss_pred -----------------------eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeE
Q 009059 339 -----------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ 395 (545)
Q Consensus 339 -----------------------~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~ 395 (545)
.++..|.||.+.|..|.|+.+ ++|++++.|.+|++|++...+|+..|.|..-|+|
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTc 414 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTC 414 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEecCCeeEE
Confidence 123456789999999999976 4666999999999999999999999999999999
Q ss_pred EEEeC-CCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe
Q 009059 396 MRFQP-RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 473 (545)
Q Consensus 396 l~~sp-~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~ 473 (545)
++|+| |.++|++|+-|+.|+||++...+.+.-... ..-|++++|.|+|++.++|+ +|.+++|+....+.....+ +.
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~-I~ 492 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH-IR 492 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee-Ee
Confidence 99999 668899999999999999998887765553 48899999999999999999 9999999987653211111 11
Q ss_pred eC------CCceEEEEEcCCCC-EEEEEEcCCeEEEEeCCCCeEE-EeccCCC--CeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 474 CT------GNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENKTL-TLSAHDK--LVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 474 ~~------~~~v~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~--~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
.+ ...|+.+.|.|... .+++.+.|..|+|||.++..++ .+.++.. .-....|+.||++|+++++|..|+|
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 11 33799999997654 5999999999999999888777 5555432 3345678899999999999999999
Q ss_pred cC
Q 009059 544 WK 545 (545)
Q Consensus 544 Wd 545 (545)
|+
T Consensus 573 W~ 574 (712)
T KOG0283|consen 573 WK 574 (712)
T ss_pred Ee
Confidence 96
No 72
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1e-27 Score=267.61 Aligned_cols=266 Identities=14% Similarity=0.204 Sum_probs=213.8
Q ss_pred CcccceeeeeecCCc----eeeE-EEEeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEE
Q 009059 236 DPRDRVGRSAEVGKG----FTFT-EFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT 309 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~----~~~~-~~~~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~ 309 (545)
.+.|..+++|+.... .... .+..+. +...|.+++|++ ++.+||+++.||.|+|||+.+++.+..+.+|...|+
T Consensus 501 gg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~ 579 (793)
T PLN00181 501 AGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW 579 (793)
T ss_pred EeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE
Confidence 345778888886432 1111 122233 356899999987 578999999999999999999999999999999999
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc-eeeEE
Q 009059 310 DVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF 387 (545)
Q Consensus 310 ~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~-~~~~~ 387 (545)
+++|+| ++.+|++|+.||+|++||+.++.. +..+..+ ..|.++.|++....++++|+.||.|++||+++.. .+..+
T Consensus 580 ~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~ 657 (793)
T PLN00181 580 SIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM 657 (793)
T ss_pred EEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe
Confidence 999997 788999999999999999987664 6666644 6799999976656778899999999999998765 34444
Q ss_pred e-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC------CEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEE
Q 009059 388 K-CQSGATQMRFQPRLGRILAAAIENYISILDVET------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 459 (545)
Q Consensus 388 ~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~------~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd 459 (545)
. +...|.++.|. ++..+++++.|+.|++||++. ...+..+.+|...+.+++|++++.+|++|+ |+.|++|+
T Consensus 658 ~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 658 IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 3 45679999997 568999999999999999974 356788999999999999999999999999 99999999
Q ss_pred cCCCCCcce--------E--EEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 460 IGSGSKGEC--------I--HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 460 ~~~~~~~~~--------i--~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
......... + .....+...|.+++|++++..|++++.+|.|+||++
T Consensus 737 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 737 KAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 765421100 0 011234567999999999999999999999999996
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=2.1e-28 Score=257.08 Aligned_cols=280 Identities=20% Similarity=0.295 Sum_probs=234.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCC------------CeEEEEeccCCccEEEEEEcCCCCEEEEEeCC
Q 009059 261 ASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTES------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 326 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~--~dg~I~lwd~~~------------~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d 326 (545)
.+...|.+++.+|||..+|||+ .|+.++||+.+. .+.+.....|.+.|+|+.|++||++||+|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 4456699999999999999999 999999998642 23445667899999999999999999999999
Q ss_pred CeEEEEECCC----CC-------------eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec
Q 009059 327 RTVRVWDTEN----PD-------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 389 (545)
Q Consensus 327 g~I~vwd~~~----~~-------------~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~ 389 (545)
+.|.||+... .. ..+..+.+|...|..++|+|++ .++++++.|++|.+||..+.+++..+..
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeeeec
Confidence 9999999872 00 1356788999999999999985 6777999999999999999998888874
Q ss_pred -cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCC------CCCEEEEEEcCCCCEEEEEe--CC---cEEE
Q 009059 390 -QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH------KNQVHSVCWNTSGEYLASVS--DE---LVRV 457 (545)
Q Consensus 390 -~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h------~~~I~~l~~sp~g~~l~s~s--dg---~I~v 457 (545)
.+.|..+.|.|-|++|++-+.|++|+||.+.+....+.+.++ ...+..+.|+|||++|++.. .+ ++.|
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 456999999999999999999999999998877666666543 23678999999999999976 33 7888
Q ss_pred EEcCCCCCcceEEEEeeCCCceEEEEEcCC-------------C----CEEEEEEcCCeEEEEeCCCCeEEE--eccCCC
Q 009059 458 WSIGSGSKGECIHELSCTGNKFHSCVFHPT-------------F----PSLLVIGCYETLELWNMTENKTLT--LSAHDK 518 (545)
Q Consensus 458 wd~~~~~~~~~i~~~~~~~~~v~~~~~sp~-------------~----~~l~~~~~dg~I~iwd~~~~~~~~--~~~h~~ 518 (545)
.+-.+- ..-..+-+|..++.++.|+|. . ..+++|+.|++|-||.....+++. ..-...
T Consensus 250 ieR~tW---k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~ 326 (942)
T KOG0973|consen 250 IERGTW---KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK 326 (942)
T ss_pred EecCCc---eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence 876443 566788899999999999872 1 157888999999999997777762 233467
Q ss_pred CeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 519 LVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 519 ~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
.|..++|+|||-.|..+|.||+|.+.
T Consensus 327 SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 327 SIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred ceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 89999999999999999999999875
No 74
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=3.1e-28 Score=228.10 Aligned_cols=261 Identities=21% Similarity=0.342 Sum_probs=223.3
Q ss_pred CcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCeEE----EEeccCCccE
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK---LLATGGHDKKAVLWCTESFTVK----STLEEHTQWI 308 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~---~latg~~dg~I~lwd~~~~~~~----~~l~~h~~~V 308 (545)
...|...|+|+..-. ....+.||.++|.+++|.-... .|++++.|.++++|..+.++.. ....+|...|
T Consensus 121 gsYDg~~riWd~~Gk----~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V 196 (423)
T KOG0313|consen 121 GSYDGTSRIWDLKGK----SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSV 196 (423)
T ss_pred eecCCeeEEEecCCc----eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccce
Confidence 345788999986543 4678899999999888855333 5999999999999998876544 3345999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCC------------------------CeeeeEeccCcccEEEEEEeCCCCcEE
Q 009059 309 TDVRFSPSLSRLATSSADRTVRVWDTENP------------------------DYSLRTFTGHSTTVMSLDFHPSKEDLL 364 (545)
Q Consensus 309 ~~l~~sp~~~~l~t~s~dg~I~vwd~~~~------------------------~~~~~~~~~h~~~V~~l~~~p~~~~ll 364 (545)
-+|+..+++.++++|+.|.+|.||+.... +.++.++.+|..+|.++.|.+ ...+
T Consensus 197 ~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~ 274 (423)
T KOG0313|consen 197 DSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVI 274 (423)
T ss_pred eEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCce
Confidence 99999999999999999999999993210 124567889999999999998 3567
Q ss_pred EEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCC---EEEEEecCCCCCEEEEEEc
Q 009059 365 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWN 441 (545)
Q Consensus 365 ~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~---~~~~~~~~h~~~I~~l~~s 441 (545)
++++.|.+|+.||+.++.+...+.......++.++|....|++|+.|..|++||.+++ .....+.+|...|.++.|+
T Consensus 275 yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkws 354 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWS 354 (423)
T ss_pred EeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecC
Confidence 7999999999999999999999999999999999999999999999999999999975 4567899999999999999
Q ss_pred CCCCE-EEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 442 TSGEY-LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 442 p~g~~-l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
|...+ |++++ |+++++||+++.. ..++.+..|...|.++.|... ..|++|+.|.+|+|+.-
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWNEG-GLIVSGGADNKLRIFKG 417 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEeccCC-ceEEeccCcceEEEecc
Confidence 97754 56667 9999999999873 478899999999999999854 46999999999999864
No 75
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.5e-29 Score=234.22 Aligned_cols=267 Identities=20% Similarity=0.286 Sum_probs=231.3
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec-cCCccEEEEEE
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRF 313 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~-~h~~~V~~l~~ 313 (545)
..+.|.+.-+|++.....++..+++.+|..+|.-+.||||.++|++|+.|..+.+||+.+|.....+. +|...+.+++|
T Consensus 241 saSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W 320 (519)
T KOG0293|consen 241 SASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAW 320 (519)
T ss_pred eccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEE
Confidence 45567888889887777789999999999999999999999999999999999999999999887774 45688999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCc-ccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC
Q 009059 314 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG 392 (545)
Q Consensus 314 sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~-~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~ 392 (545)
.|||..+++|+.|++|..||++... +..+.+-. ..|.+++..+||+.+++++ .|..|++|+.++......+..+.+
T Consensus 321 ~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~lise~~~ 397 (519)
T KOG0293|consen 321 CPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREARVDRGLISEEQP 397 (519)
T ss_pred ccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEEEcCCCcEEEEEe-cccceeeechhhhhhhccccccCc
Confidence 9999999999999999999998543 34444332 4699999999999888555 699999999998888888888899
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCC--CEEEEEEcC-CCCEEEEEe-CCcEEEEEcCCCCCcce
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGEC 468 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~--~I~~l~~sp-~g~~l~s~s-dg~I~vwd~~~~~~~~~ 468 (545)
+++++++.++.++++.-.+..+++||++..+.+..+.||+. .|..-||.- +..++++|+ |+.|+||+..++ ..
T Consensus 398 its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---kl 474 (519)
T KOG0293|consen 398 ITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---KL 474 (519)
T ss_pred eeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---ce
Confidence 99999999999999999999999999999888899999875 344556654 458999999 999999999888 88
Q ss_pred EEEEeeCCCceEEEEEcCCCC-EEEEEEcCCeEEEEeCCC
Q 009059 469 IHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE 507 (545)
Q Consensus 469 i~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~I~iwd~~~ 507 (545)
+.++.+|...|++++|.|..+ .+++++.||+|+||-...
T Consensus 475 l~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 475 LAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999999999999775 578888899999997654
No 76
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.8e-28 Score=220.56 Aligned_cols=267 Identities=19% Similarity=0.312 Sum_probs=223.4
Q ss_pred eeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCC--EEEEEeCCCe
Q 009059 251 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRT 328 (545)
Q Consensus 251 ~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~--~l~t~s~dg~ 328 (545)
..+..+..+.+|.++|+|++.+ +.|+|+|+.|-+|+|||+.....+..+-.|.+.|+++.|.+.-. .|++|+.||.
T Consensus 31 ~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 31 PTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred eeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCc
Confidence 4566677889999999999996 88999999999999999999999999999999999999998765 8999999999
Q ss_pred EEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEE
Q 009059 329 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 408 (545)
Q Consensus 329 I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~ 408 (545)
|.+|+..... .+..+++|.+.|+.++++|.++ |..+.+.|+.+++||+-+|+...........+.+.|+|.|.+++++
T Consensus 109 i~iw~~~~W~-~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 109 IIIWRVGSWE-LLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVS 186 (362)
T ss_pred EEEEEcCCeE-EeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEE
Confidence 9999999774 5899999999999999999975 5558888999999999999988888887888889999998887776
Q ss_pred ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEE--cC
Q 009059 409 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF--HP 486 (545)
Q Consensus 409 ~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~--sp 486 (545)
.. ..|-+|.+++......+. ....+.|+.|...+.+++.+.|+.|.+||..+. .+...+..|.+.|-.+.+ .|
T Consensus 187 ~~-~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~~~ 261 (362)
T KOG0294|consen 187 GR-NKIDIYQLDNASVFREIE-NPKRILCATFLDGSELLVGGDNEWISLKDTDSD---TPLTEFLAHENRVKDIASYTNP 261 (362)
T ss_pred ec-cEEEEEecccHhHhhhhh-ccccceeeeecCCceEEEecCCceEEEeccCCC---ccceeeecchhheeeeEEEecC
Confidence 65 568899988876655554 336688888875554444444889999999875 788899999999999984 56
Q ss_pred CCCEEEEEEcCCeEEEEeCCCC-----eEEEeccCCCCeeEEEEe
Q 009059 487 TFPSLLVIGCYETLELWNMTEN-----KTLTLSAHDKLVSSLAAS 526 (545)
Q Consensus 487 ~~~~l~~~~~dg~I~iwd~~~~-----~~~~~~~h~~~V~~l~~s 526 (545)
++.+|+++++||.|+|||++.. +.+........++|+...
T Consensus 262 ~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~~ 306 (362)
T KOG0294|consen 262 EHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRVK 306 (362)
T ss_pred CceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeeeh
Confidence 7889999999999999999876 333333345667776643
No 77
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.8e-28 Score=223.20 Aligned_cols=289 Identities=19% Similarity=0.323 Sum_probs=245.5
Q ss_pred eeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEE
Q 009059 252 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 331 (545)
Q Consensus 252 ~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~v 331 (545)
.++.++.|.||.+.|+.++.......+.+++.|.+.+||.++++.++..+.+|.+.|++|+|++.+.++++++.|++-+|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 56678889999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred EECC------C---------------------------------CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCc
Q 009059 332 WDTE------N---------------------------------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 372 (545)
Q Consensus 332 wd~~------~---------------------------------~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~ 372 (545)
|... . -..++..+.+|.+.|.+..|...+..++ +++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~v-TaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMV-TASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceee-eeecccc
Confidence 9621 0 0124567889999999999998877666 9999999
Q ss_pred EEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECCCeEEEEECCCC-EEEEEecCCCCCEEEEEEcCCCCEEEEE
Q 009059 373 IRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASV 450 (545)
Q Consensus 373 I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~s~ 450 (545)
-.+||+++++.+..+..+ ...+.++-+|....+++.+.|.+.++||.+.. ..+..|++|...|+++.|..+.+ +++|
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSg 374 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSG 374 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeec
Confidence 999999999999988754 45788888998888888899999999999854 55778999999999999987655 5566
Q ss_pred e-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEe-----ccCCCCeeEEE
Q 009059 451 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL-----SAHDKLVSSLA 524 (545)
Q Consensus 451 s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~-----~~h~~~V~~l~ 524 (545)
+ |.+|+|||+++.. ..+.++. ...+++.++++..++.|+.--.+..|++||++..++..+ .+|...|+|++
T Consensus 375 SDDrTvKvWdLrNMR--splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMR--SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA 451 (481)
T ss_pred CCCceEEEeeecccc--Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence 6 7899999998764 3455554 467889999999998787777778999999998877633 47999999999
Q ss_pred EeCCCC--EEEEEeCCCcEEEcC
Q 009059 525 ASTVNG--MVASASHDKCVKIWK 545 (545)
Q Consensus 525 ~spd~~--~las~s~Dg~I~iWd 545 (545)
|..+.. -|.+++.|..+.=|+
T Consensus 452 W~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 452 WLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ccccCcccccccccccceeeeeE
Confidence 986543 578999999988884
No 78
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.4e-28 Score=218.39 Aligned_cols=241 Identities=24% Similarity=0.362 Sum_probs=216.4
Q ss_pred EEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee-eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEE
Q 009059 299 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 377 (545)
Q Consensus 299 ~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~-~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd 377 (545)
+.+.+|...|.+|+|+.+|..|++|+.|+++.+|+++..... -..+.+|.+.|-.++|+|....++++++.|..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 456789999999999999999999999999999999866431 1356789999999999999999999999999999999
Q ss_pred CCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEE
Q 009059 378 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVR 456 (545)
Q Consensus 378 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~ 456 (545)
++.++++..+....+-..+.|+|++++++++..|..|.++|.++.+.+...+ ....++.++|+.++.+++... -|+|.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence 9999999999988888899999999999999999999999999988777665 566788899987777666655 79999
Q ss_pred EEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEE
Q 009059 457 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 535 (545)
Q Consensus 457 vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~ 535 (545)
|.....- +.+..++.|.....|+.|+|+|+++++|+.|-.+-+||+.+.-+. .+..++-+|..|.|+.||++||+|
T Consensus 173 ILsypsL---kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 173 ILSYPSL---KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEecccc---ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 9998755 788999999999999999999999999999999999999998877 777899999999999999999999
Q ss_pred eCCCcEEE
Q 009059 536 SHDKCVKI 543 (545)
Q Consensus 536 s~Dg~I~i 543 (545)
++|-.|-|
T Consensus 250 SEDh~IDI 257 (313)
T KOG1407|consen 250 SEDHFIDI 257 (313)
T ss_pred CccceEEe
Confidence 99988765
No 79
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.8e-29 Score=246.23 Aligned_cols=274 Identities=23% Similarity=0.408 Sum_probs=234.5
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEEcCCCe------EEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-ee
Q 009059 269 CHFSP-DGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YS 340 (545)
Q Consensus 269 l~~sp-dg~~latg~~dg~I~lwd~~~~~------~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~-~~ 340 (545)
+..+. .+++|++||.||.|++|++.... ....++.|.++|.++....+++.|++++.|-+|++|+..... .+
T Consensus 30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c 109 (735)
T KOG0308|consen 30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFC 109 (735)
T ss_pred ccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchh
Confidence 44443 67789999999999999876422 356788999999999999999999999999999999998764 56
Q ss_pred eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc--eeeEEe----------ccCCeeEEEEeCCCCEEEEE
Q 009059 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFK----------CQSGATQMRFQPRLGRILAA 408 (545)
Q Consensus 341 ~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~--~~~~~~----------~~~~v~~l~~sp~~~~l~~~ 408 (545)
..++..|.+.|.|+++-.....++++|+.|+.|.+||++++. .+..+. ....+.+++.++.+..++.|
T Consensus 110 ~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG 189 (735)
T KOG0308|consen 110 MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG 189 (735)
T ss_pred HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec
Confidence 888999999999999944446889999999999999999873 232221 23458899999998888899
Q ss_pred ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCC
Q 009059 409 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 487 (545)
Q Consensus 409 ~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~ 487 (545)
+.++.|++||.++.+.+..+.+|...|.++..++||..+++++ ||+|++||+... .|+.++..|...|+++..+|+
T Consensus 190 gtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~VWaL~~~~s 266 (735)
T KOG0308|consen 190 GTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGVWALQSSPS 266 (735)
T ss_pred CcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCceEEEeeCCC
Confidence 9999999999999999999999999999999999999999988 999999999766 899999999999999999999
Q ss_pred CCEEEEEEcCCeEEEEeCCCC-eEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 488 FPSLLVIGCYETLELWNMTEN-KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 488 ~~~l~~~~~dg~I~iwd~~~~-~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
-.++++|+.|+.|+.=|+.+. +...+...+.+|..+..+.+.+-+-+++.|+.|+-|.
T Consensus 267 f~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 267 FTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred cceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 999999999999999999884 3445556677788888776555557778899999884
No 80
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.9e-27 Score=247.12 Aligned_cols=259 Identities=22% Similarity=0.423 Sum_probs=228.2
Q ss_pred CcccceeeeeecCCceeeEEEEe-ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~-l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
...+.++++|+...++. +.. +.||.+.|.+++|..-+.+|++|+.|.+++|||..++++..++.+|...|.++...
T Consensus 224 ~s~~~tl~~~~~~~~~~---i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~ 300 (537)
T KOG0274|consen 224 GSDDSTLHLWDLNNGYL---ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID 300 (537)
T ss_pred cCCCceeEEeecccceE---EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc
Confidence 44567779999888763 444 99999999999999878899999999999999999999999999999999999885
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCe
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGA 393 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v 393 (545)
+ .++++|+.|.+|++|+++++.. +..+.+|.++|.++..+ ..++++|+.|+.|++||+.+++++..+..+ ..|
T Consensus 301 ~--~~~~sgs~D~tVkVW~v~n~~~-l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V 374 (537)
T KOG0274|consen 301 P--FLLVSGSRDNTVKVWDVTNGAC-LNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRV 374 (537)
T ss_pred C--ceEeeccCCceEEEEeccCcce-EEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceE
Confidence 4 4888899999999999998775 88888899999999998 356779999999999999999999998754 458
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEEECCCC-EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEE
Q 009059 394 TQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~ 471 (545)
.++.+... ..++.|+.|+.|++||+++. +++..+.+|..-+..+.+ .+++|++++ |+.|++||..++ .++..
T Consensus 375 ~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~---~~~~~ 448 (537)
T KOG0274|consen 375 YSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG---ECLRT 448 (537)
T ss_pred EEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccC---ceeee
Confidence 88888776 88999999999999999999 999999999998876664 678899888 999999999887 78888
Q ss_pred Eee-CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 472 LSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 472 ~~~-~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
+.. +...|..+++. ...+++++.++.+++||+++++..
T Consensus 449 ~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 449 LEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred eccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 887 56788888876 566999999999999999999887
No 81
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4e-28 Score=216.16 Aligned_cols=253 Identities=19% Similarity=0.288 Sum_probs=208.1
Q ss_pred CceeeEEEEeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcC-CCeEEEEeccCCccEEEEEEcC-CCCEEEEEeC
Q 009059 249 KGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSA 325 (545)
Q Consensus 249 ~~~~~~~~~~l~~H~~~V~~l~~spd-g~~latg~~dg~I~lwd~~-~~~~~~~l~~h~~~V~~l~~sp-~~~~l~t~s~ 325 (545)
.+..+.+.+.+.- .+.+..++|+++ ...+++++.||.++|||+. ...++..+++|...|.++.|++ +...+++++.
T Consensus 47 ~~~gi~e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSW 125 (311)
T KOG0277|consen 47 DPKGIQECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSW 125 (311)
T ss_pred CCCCeEEEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeecc
Confidence 3444445554443 356889999995 4578888999999999964 3467888999999999999998 5667888999
Q ss_pred CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC-ceeeEEeccCCeeEEEEeC-CCC
Q 009059 326 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQP-RLG 403 (545)
Q Consensus 326 dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~-~~~~~~~~~~~v~~l~~sp-~~~ 403 (545)
|++|++|+...+.. +.++.+|...|+...|+|....++++++.|+++++||++.. +.+....+...+.++.|+. +..
T Consensus 126 D~TiKLW~~~r~~S-v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~ 204 (311)
T KOG0277|consen 126 DGTIKLWDPNRPNS-VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHN 204 (311)
T ss_pred CCceEeecCCCCcc-eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCc
Confidence 99999999987765 89999999999999999999999999999999999999864 4444333445899999987 445
Q ss_pred EEEEEECCCeEEEEECCCC-EEEEEecCCCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceE
Q 009059 404 RILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 480 (545)
Q Consensus 404 ~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~ 480 (545)
.+++++.|+.|++||++.- .++..+.+|.-.|..+.|+|.. .+|++++ |-+++|||..... .++.+...|..-+.
T Consensus 205 vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~ 282 (311)
T KOG0277|consen 205 VLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVC 282 (311)
T ss_pred EEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEe
Confidence 6777888999999999974 5688899999999999999975 6788888 8899999997543 45566667888888
Q ss_pred EEEEcCC-CCEEEEEEcCCeEEEEeC
Q 009059 481 SCVFHPT-FPSLLVIGCYETLELWNM 505 (545)
Q Consensus 481 ~~~~sp~-~~~l~~~~~dg~I~iwd~ 505 (545)
.+.|++- ..+++.++.|+.++||+-
T Consensus 283 g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 283 GLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccccccCceeeecccccceeeecc
Confidence 8888874 567999999999999984
No 82
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.2e-28 Score=233.25 Aligned_cols=260 Identities=22% Similarity=0.348 Sum_probs=224.2
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
.++.|+.+++|++.-+. ...+.+|.|..+.|+.+.|.++++.+++++.|+.+++|++...+...++.+|.+.|+++.|.
T Consensus 192 tgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~ 270 (459)
T KOG0288|consen 192 TGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFK 270 (459)
T ss_pred hcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhh
Confidence 34567778888776544 66788899999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCee
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT 394 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~ 394 (545)
.....+++|+.|.+|++||+....+ .+++. ....+..|... ...+++|-.|+.|++||++...+.......+.|+
T Consensus 271 ~~~~~vVsgs~DRtiK~WDl~k~~C-~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vt 345 (459)
T KOG0288|consen 271 LSHSRVVSGSADRTIKLWDLQKAYC-SKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVT 345 (459)
T ss_pred ccccceeeccccchhhhhhhhhhhe-ecccc-ccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCccee
Confidence 8777799999999999999997554 55444 23456667665 3467799999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCC----CCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceE
Q 009059 395 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH----KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 469 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h----~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i 469 (545)
++..++++..+++++.|..+.++|+++......+... ....+.+.|||++.|+++|+ ||.|+||++.++ ++.
T Consensus 346 Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg---KlE 422 (459)
T KOG0288|consen 346 SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG---KLE 422 (459)
T ss_pred eEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc---eEE
Confidence 9999999999999999999999999999888776542 23588999999999999999 999999999988 444
Q ss_pred EEEeeCC--CceEEEEEcCCCCEEEEEEcCCeEEEE
Q 009059 470 HELSCTG--NKFHSCVFHPTFPSLLVIGCYETLELW 503 (545)
Q Consensus 470 ~~~~~~~--~~v~~~~~sp~~~~l~~~~~dg~I~iw 503 (545)
..+.... ..|+++.|+|.|..|++++.++.+.+|
T Consensus 423 ~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 423 KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 4444333 359999999999999999999999998
No 83
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1e-25 Score=197.37 Aligned_cols=290 Identities=19% Similarity=0.257 Sum_probs=235.7
Q ss_pred eeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC------C---------eEEEEeccCCccEEEEEEcC
Q 009059 251 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------F---------TVKSTLEEHTQWITDVRFSP 315 (545)
Q Consensus 251 ~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~------~---------~~~~~l~~h~~~V~~l~~sp 315 (545)
..|..+.++.. +..|.+++|+|.|.+.|+|+..++++|--... + ...+.-+.|.+.|+|.+|+|
T Consensus 21 ~~f~~i~~l~d-sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 21 KHFEAINILED-SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred cceEEEEEecc-hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 44556666554 45699999999999999999999998874321 1 11123357899999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCee----eeEeccCcccEEEEEEeCC---CCcEEEEEc-CCCcEEEEECCCCceeeEE
Q 009059 316 SLSRLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVMSLDFHPS---KEDLLCSCD-NNSEIRYWSINNGSCAGVF 387 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~~----~~~~~~h~~~V~~l~~~p~---~~~ll~s~s-~dg~I~lwd~~~~~~~~~~ 387 (545)
+|.+|++|+.|++|++.-++..... -..+..|.+.|..++|..+ +..++++++ .|..|++-|...+.....+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 9999999999999999877644321 2367789999999999653 445666654 5778888899899888888
Q ss_pred eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC--C-----CCCEEEEEEcCCCCEEEEEe-CCcEEEEE
Q 009059 388 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--H-----KNQVHSVCWNTSGEYLASVS-DELVRVWS 459 (545)
Q Consensus 388 ~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h-----~~~I~~l~~sp~g~~l~s~s-dg~I~vwd 459 (545)
..+.+-.-.-++-++-.+++++.|.+|++||++-..++.++.. | ...|.+++..|.|++|++|. |....+||
T Consensus 180 sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 180 SGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred cCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 7655533334555667788888999999999999888877643 2 35799999999999999999 88999999
Q ss_pred cCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe-----EEEeccCCCCeeEEEEeCCCCEEEE
Q 009059 460 IGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-----TLTLSAHDKLVSSLAASTVNGMVAS 534 (545)
Q Consensus 460 ~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-----~~~~~~h~~~V~~l~~spd~~~las 534 (545)
++.+ ..+..+..|...|.++.|+|...++++++.|..|++-|+.... .+....|...+..+.|+|..-.+++
T Consensus 260 irg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfis 336 (350)
T KOG0641|consen 260 IRGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFIS 336 (350)
T ss_pred eeCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeee
Confidence 9988 8899999999999999999999999999999999999996542 2255679999999999999988999
Q ss_pred EeCCCcEEEc
Q 009059 535 ASHDKCVKIW 544 (545)
Q Consensus 535 ~s~Dg~I~iW 544 (545)
.+.|.++.+|
T Consensus 337 ssadkt~tlw 346 (350)
T KOG0641|consen 337 SSADKTATLW 346 (350)
T ss_pred ccCcceEEEe
Confidence 9999999999
No 84
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=7.8e-27 Score=213.74 Aligned_cols=270 Identities=19% Similarity=0.265 Sum_probs=220.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 340 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~ 340 (545)
.-.+.|..+.|+|.+..|+++++||.+++|++....+...+. |..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~-- 86 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN-- 86 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCc--
Confidence 345679999999998899999999999999999876665554 899999999986 5679999999999999999876
Q ss_pred eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECC
Q 009059 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 420 (545)
Q Consensus 341 ~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~ 420 (545)
...+-.|...|.||.+.+... .+++|+.|++|++||.+.......+.....|.++... ++.|++|+.+..|.+||++
T Consensus 87 ~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 87 EDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred ceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcc
Confidence 456667999999999998754 5559999999999999987777777777777777665 4789999999999999999
Q ss_pred CCEEEEEec--CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC-CCcceEEEEeeCC---------CceEEEEEcCC
Q 009059 421 TQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-SKGECIHELSCTG---------NKFHSCVFHPT 487 (545)
Q Consensus 421 ~~~~~~~~~--~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~-~~~~~i~~~~~~~---------~~v~~~~~sp~ 487 (545)
+........ .-+-.+.|+++.|++.-+++++ ||.|.+=.+... .....-..+++|. .+|++++|+|-
T Consensus 164 n~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred cccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 876544322 2345789999999888777788 998777665543 1112334455553 46899999999
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeC
Q 009059 488 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH 537 (545)
Q Consensus 488 ~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~ 537 (545)
...|++|+.||.|.+||+...+.+ .+......|..++|+.+|..||+|+.
T Consensus 244 ~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999999998887 66666788999999999999999874
No 85
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=230.65 Aligned_cols=243 Identities=19% Similarity=0.251 Sum_probs=211.3
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 009059 258 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN 336 (545)
Q Consensus 258 ~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~ 336 (545)
++.-..+.|.+++|..||++||+|+..|.|+|||+.+...++.+.+|+.+|..+.|+| ++..|++|+.|+.+++||+.+
T Consensus 63 ~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 63 TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred hHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 3444567799999999999999999999999999777667788999999999999999 466788999999999999998
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC-ceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEE
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
... ...+.+|++.|.|.+|+|..+.++++|+.||.|++||++.. ..+..+.+..+|..+.+.|.|..+++ +..+.|+
T Consensus 143 a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~ias-AgGn~vk 220 (487)
T KOG0310|consen 143 AYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIAS-AGGNSVK 220 (487)
T ss_pred cEE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEE-cCCCeEE
Confidence 764 66899999999999999998899999999999999999987 78889999999999999999665554 4567899
Q ss_pred EEECCCC-EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 416 ILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 416 i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
+||+-+| +.+..+..|...|+|+++..++..|++++ |+.|++||+.+- +.++.+. -.++|.+++.+|++..+++
T Consensus 221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~-~~~pvLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWK-YPGPVLSIAVSPDDQTVVI 296 (487)
T ss_pred EEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeee-cccceeeEEecCCCceEEE
Confidence 9999965 55555556999999999999999999999 999999997655 5666665 4689999999999999999
Q ss_pred EEcCCeEEEEeCC
Q 009059 494 IGCYETLELWNMT 506 (545)
Q Consensus 494 ~~~dg~I~iwd~~ 506 (545)
|..+|.+.+-+..
T Consensus 297 GmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 297 GMSNGLVSIRRRE 309 (487)
T ss_pred ecccceeeeehhh
Confidence 9999977666443
No 86
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=4.9e-26 Score=232.22 Aligned_cols=304 Identities=16% Similarity=0.263 Sum_probs=245.0
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
.......+|++.++. .+.+++++...|+++.=+|-=..+|.|..+|+|.|++++.++.+.+++...+.|+.++|..|
T Consensus 179 s~~G~lql~Nvrt~K---~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtD 255 (910)
T KOG1539|consen 179 SSQGRLQLWNVRTGK---VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTD 255 (910)
T ss_pred ecCCcEEEEEeccCc---EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccC
Confidence 345667899998886 56778899999999999998889999999999999999999999999866799999999999
Q ss_pred CCE-EEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc-------------
Q 009059 317 LSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------------- 382 (545)
Q Consensus 317 ~~~-l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~------------- 382 (545)
|.. +++|+..|.+.+||++..+........|.+.|..+.|.|.. .++++.+.|..+++|=.+++.
T Consensus 256 G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs 334 (910)
T KOG1539|consen 256 GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHS 334 (910)
T ss_pred CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC-ceEeeccCCCceeEEEeeCCCCcchheeeccCCC
Confidence 875 56667779999999997665444555666667777766653 344466666655555222100
Q ss_pred --------------------------------------------------------------------------------
Q 009059 383 -------------------------------------------------------------------------------- 382 (545)
Q Consensus 383 -------------------------------------------------------------------------------- 382 (545)
T Consensus 335 ~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv 414 (910)
T KOG1539|consen 335 APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNV 414 (910)
T ss_pred CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcce
Confidence
Q ss_pred -------------------e-eeEEecc------CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEe---cCCCC
Q 009059 383 -------------------C-AGVFKCQ------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKN 433 (545)
Q Consensus 383 -------------------~-~~~~~~~------~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~---~~h~~ 433 (545)
. ...+... ..+++++.++.|++.+.|...|.|-+|++.+|.....+ ..|.+
T Consensus 415 ~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~ 494 (910)
T KOG1539|consen 415 ITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG 494 (910)
T ss_pred eEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccC
Confidence 0 0001111 23668899999999999999999999999999888888 47999
Q ss_pred CEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcc--------------------------------------eEEEEee
Q 009059 434 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE--------------------------------------CIHELSC 474 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~--------------------------------------~i~~~~~ 474 (545)
+|+.++...-++.+++++ +|.+++||+....... .+..+.+
T Consensus 495 ~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g 574 (910)
T KOG1539|consen 495 EVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG 574 (910)
T ss_pred ceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc
Confidence 999999998889899888 9999999987643100 1113557
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCC-CcEEEc
Q 009059 475 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW 544 (545)
Q Consensus 475 ~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~D-g~I~iW 544 (545)
|.+.|+.++|||+|++|++++.|++|++||+.++.++-...-+.+++++.|+|+|.+|||+..| .-|++|
T Consensus 575 h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 575 HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 8999999999999999999999999999999999999666778899999999999999999998 569998
No 87
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.6e-28 Score=223.84 Aligned_cols=263 Identities=20% Similarity=0.303 Sum_probs=225.9
Q ss_pred CcccceeeeeecCCceeeEE-----EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec-cCCccEE
Q 009059 236 DPRDRVGRSAEVGKGFTFTE-----FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWIT 309 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~-----~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~-~h~~~V~ 309 (545)
.+.|.++.+|+.-+|..-+. -..+.-|..+|.|++||.|...||+|+.||.|+||.+++|.+++.+. .|+..|+
T Consensus 231 gSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt 310 (508)
T KOG0275|consen 231 GSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVT 310 (508)
T ss_pred ccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCee
Confidence 44567788888777643322 23355688999999999999999999999999999999999999996 8999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec
Q 009059 310 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 389 (545)
Q Consensus 310 ~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~ 389 (545)
|+.|+.|+..+++++.|.+++|.-+.+++. ++.+.+|...|+...|.++|..++ +++.||+|++|+.++.+|+.+|+.
T Consensus 311 ~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~ 388 (508)
T KOG0275|consen 311 CLSFSRDNSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKP 388 (508)
T ss_pred EEEEccCcchhhcccccceEEEeccccchh-HHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccC
Confidence 999999999999999999999999999885 999999999999999999987766 999999999999999999999875
Q ss_pred cC---CeeEEEEeCCC-CEEEEEECCCeEEEEECCCCEEEEEecC---CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcC
Q 009059 390 QS---GATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIG 461 (545)
Q Consensus 390 ~~---~v~~l~~sp~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~---h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~ 461 (545)
.+ .|..+...|.+ ..++++...++|+|.++.. ..++.+.. ..+...+.+.+|.|.++.+.+ |+.++.|.+.
T Consensus 389 ~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~ 467 (508)
T KOG0275|consen 389 LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVL 467 (508)
T ss_pred CCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEee
Confidence 43 47777777754 4677788899999999864 45555542 345677788999999999988 9999999998
Q ss_pred CCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 462 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 462 ~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
++ ..-.++..|...+..++-+|..+.|++-+.||.+++|.
T Consensus 468 sG---~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 468 SG---KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cC---ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 88 56677888999999999999999999999999999994
No 88
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=6.6e-26 Score=235.35 Aligned_cols=245 Identities=18% Similarity=0.263 Sum_probs=190.4
Q ss_pred EeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC-------eEEEEeccCCccEEEEEEcCCC-CEEEEEeCCC
Q 009059 257 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADR 327 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~-------~~~~~l~~h~~~V~~l~~sp~~-~~l~t~s~dg 327 (545)
..+.+|.+.|++++|+| ++++||+|+.|++|+|||+.++ +.+..+.+|...|.+++|+|++ .+|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 45789999999999999 8899999999999999999764 3567889999999999999975 6999999999
Q ss_pred eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC--eeEEEEeCCCCEE
Q 009059 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRI 405 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~--v~~l~~sp~~~~l 405 (545)
+|+|||+.++.. +..+.+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+..+.. ...+.|.++++.+
T Consensus 149 tVrIWDl~tg~~-~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 149 VVNVWDVERGKA-VEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEEECCCCeE-EEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 999999998764 778889999999999999975 666999999999999999998887765543 4567888888888
Q ss_pred EEEE----CCCeEEEEECCCCE-EEEEecCC-CCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEee-CC
Q 009059 406 LAAA----IENYISILDVETQV-CRLKLQGH-KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-TG 476 (545)
Q Consensus 406 ~~~~----~dg~I~i~d~~~~~-~~~~~~~h-~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~-~~ 476 (545)
++++ .|+.|++||+++.. ++.....+ ...+....|++++.+|++++ |+.|++||+.++. .+..... +.
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---~~~~~~~~s~ 303 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---LTFCSSYSSV 303 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---eEEEeeccCC
Confidence 8765 37899999998754 33333323 34566678999999888775 8899999998873 3333322 34
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 477 NKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 477 ~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
.++..++|.|... +-...-...++|.+...
T Consensus 304 ~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 304 EPHKGLCMMPKWS--LDTRKCEIARFYALTYH 333 (493)
T ss_pred CCCcceEeccccc--ccccceeeeEEEEecCC
Confidence 5677888887532 11112223455655443
No 89
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-26 Score=212.12 Aligned_cols=258 Identities=19% Similarity=0.320 Sum_probs=208.8
Q ss_pred EEEEeCCCcEEEEEcC------------CCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEec
Q 009059 278 LATGGHDKKAVLWCTE------------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 278 latg~~dg~I~lwd~~------------~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~ 345 (545)
|++|+++..|.=+++. +..++..+..|.+.|++++. ++.++|+|+.|-+|+|||+..... +..+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q-lg~ll 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ-LGILL 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhh-hccee
Confidence 5566666655555442 22345667899999999999 588999999999999999998665 77888
Q ss_pred cCcccEEEEEEeCCCC--cEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 009059 346 GHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQ 422 (545)
Q Consensus 346 ~h~~~V~~l~~~p~~~--~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~ 422 (545)
.|.+.|+++.|.+.-. .|+ +|+.||.|.+|+....+++..++.+ ..|+.++++|.++.-++.+.|+.++.|++-+|
T Consensus 81 ~HagsitaL~F~~~~S~shLl-S~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLL-SGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred ccccceEEEEecCCcchhhee-eecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence 8999999999988643 555 9999999999999999999988754 45999999999999999999999999999988
Q ss_pred EEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE
Q 009059 423 VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 502 (545)
Q Consensus 423 ~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i 502 (545)
+.-+.+.- ....+.+.|+|.|.+++.+..+.|-+|.+.+... ..++. ....+.++.|. ++..|++|+.++.|.+
T Consensus 160 r~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v---~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 160 RVAFVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASV---FREIE-NPKRILCATFL-DGSELLVGGDNEWISL 233 (362)
T ss_pred ccceeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccHhH---hhhhh-ccccceeeeec-CCceEEEecCCceEEE
Confidence 76665542 2333459999999999999988899999877532 22222 22446666665 4556999999999999
Q ss_pred EeCCCCeEE-EeccCCCCeeEEEE--eCCCCEEEEEeCCCcEEEcC
Q 009059 503 WNMTENKTL-TLSAHDKLVSSLAA--STVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 503 wd~~~~~~~-~~~~h~~~V~~l~~--spd~~~las~s~Dg~I~iWd 545 (545)
||.+...+. .+.+|...|-++.+ .|++.||+|++.||.|+|||
T Consensus 234 ~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 234 KDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred eccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 999987777 77899999999985 46678999999999999997
No 90
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.9e-26 Score=231.19 Aligned_cols=260 Identities=20% Similarity=0.283 Sum_probs=223.1
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc-CCccEEEEEEcCCC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSL 317 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~-h~~~V~~l~~sp~~ 317 (545)
...+-+|+..++..... ...+.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +
T Consensus 196 g~~vylW~~~s~~v~~l---~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~ 270 (484)
T KOG0305|consen 196 GQSVYLWSASSGSVTEL---CSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--S 270 (484)
T ss_pred cceEEEEecCCCceEEe---EecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--C
Confidence 44678888888763222 223388999999999999999999999999999999999999998 99999999997 6
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE-eccCCeeEE
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQM 396 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~-~~~~~v~~l 396 (545)
..+.+|+.|+.|..+|++........+.+|...|..+.|++++ ..+++|+.|+.+.|||....+....+ .+...|..+
T Consensus 271 ~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~ 349 (484)
T KOG0305|consen 271 SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKAL 349 (484)
T ss_pred ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEEeccceeeeEe
Confidence 6899999999999999998776555688999999999999997 46669999999999999766666555 466779999
Q ss_pred EEeCC-CCEEEEEE--CCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe---CCcEEEEEcCCCCCcceEE
Q 009059 397 RFQPR-LGRILAAA--IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 397 ~~sp~-~~~l~~~~--~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s---dg~I~vwd~~~~~~~~~i~ 470 (545)
+|+|- .+.|++|+ .|+.|++||..++..+..+. ....|..|.|++..+-|+++. ++.|.||++.+. ..+.
T Consensus 350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~ 425 (484)
T KOG0305|consen 350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVA 425 (484)
T ss_pred eeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceee
Confidence 99995 45556554 39999999999999888776 578999999999986666544 779999999875 7788
Q ss_pred EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 471 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
.+.+|...|..++++|++..+++++.|.++++|++-..
T Consensus 426 ~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 426 ELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999999999999999999999999999999998764
No 91
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.5e-26 Score=220.40 Aligned_cols=273 Identities=20% Similarity=0.300 Sum_probs=223.7
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEE----E-------------e-ccCCccEEEEEEcCCC
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS----T-------------L-EEHTQWITDVRFSPSL 317 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~----~-------------l-~~h~~~V~~l~~sp~~ 317 (545)
+..+..|.-+|+||+++||++++++++.+++|.=|++.+++... . - +.|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 67788999999999999999999999999999999988776331 1 0 2688899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeE-EeccCCeeEE
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKCQSGATQM 396 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~-~~~~~~v~~l 396 (545)
+|||+|+.|..|.||+.++... +..+.+|.+.|.+++|-.....+ ++++.|+.|++|++.....+.+ +.++..|..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~eh-v~~~~ghr~~V~~L~fr~gt~~l-ys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEH-VKVFKGHRGAVSSLAFRKGTSEL-YSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcccch-hhcccccccceeeeeeecCccce-eeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 9999999999999999998775 88899999999999998765444 4889999999999998777665 4567789999
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe-e
Q 009059 397 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-C 474 (545)
Q Consensus 397 ~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~-~ 474 (545)
.....+..+-+++.|+++++|++... ....+.+|.+.+-|++|-.+.. +++|+ +|.|.+|++.+.+ ++.+.. .
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KKk---plf~~~~A 367 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKKK---PLFTSRLA 367 (479)
T ss_pred chhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeecccC---ceeEeecc
Confidence 88888666667779999999999543 3455778899999999986655 55566 9999999997753 333222 1
Q ss_pred C-----------CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe----EEEeccCCCCeeEEEEeCCCCEEEEE
Q 009059 475 T-----------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK----TLTLSAHDKLVSSLAASTVNGMVASA 535 (545)
Q Consensus 475 ~-----------~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~----~~~~~~h~~~V~~l~~spd~~~las~ 535 (545)
| ..+|++++..|....+++|+.+|.|++|-+.++- ++.-..-.+.|++|+|+++|+.|++|
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 1 1379999999999999999999999999998882 22223467889999999999966655
No 92
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.8e-26 Score=209.54 Aligned_cols=285 Identities=18% Similarity=0.277 Sum_probs=212.4
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE--EEe--ccCCccEEEEEEcCCCCEEE-EEeCCCeEE
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL--EEHTQWITDVRFSPSLSRLA-TSSADRTVR 330 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~--~~l--~~h~~~V~~l~~sp~~~~l~-t~s~dg~I~ 330 (545)
+..|++|.+.|+|++|+.||++||+++.|+.|+||+++.+... +.+ .-.-+..+.++|.||-+-++ .+-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4568999999999999999999999999999999999875332 111 11123467899999977554 444556899
Q ss_pred EEECCCC---Ceeee--------EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEE
Q 009059 331 VWDTENP---DYSLR--------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRF 398 (545)
Q Consensus 331 vwd~~~~---~~~~~--------~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~ 398 (545)
+|.+... ..... .-..|.-.+..+-.-.+ ..++++++.|..|.+|+++ |+.+..+... ..-...+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 9987532 21111 12235555666665544 4677799999999999999 8877776543 34567889
Q ss_pred eCCCCEEEEEECCCeEEEEECC---CC-----EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC----CC
Q 009059 399 QPRLGRILAAAIENYISILDVE---TQ-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG----SK 465 (545)
Q Consensus 399 sp~~~~l~~~~~dg~I~i~d~~---~~-----~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~----~~ 465 (545)
+|+|.++++++---.|++|++- .| ..+..+++|...|..++|+++...+++.+ ||.++|||+.-. +.
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999863 22 34678899999999999999999999999 999999997532 11
Q ss_pred cceEEEE----eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-E-eccCCCCeeEEEEeCCCCEEEEEeCCC
Q 009059 466 GECIHEL----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T-LSAHDKLVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 466 ~~~i~~~----~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~-~~~h~~~V~~l~~spd~~~las~s~Dg 539 (545)
...+.+. ...+.....+..+|++..|+ .+....|++|..++++.. . ...|...|.+|+|+++|++++|++ |.
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA-~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLA-VSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEE-eecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 2222222 12234445899999999554 455567999999998877 3 347999999999999999999997 45
Q ss_pred cEEEc
Q 009059 540 CVKIW 544 (545)
Q Consensus 540 ~I~iW 544 (545)
.+++.
T Consensus 395 ~vrv~ 399 (420)
T KOG2096|consen 395 YVRVI 399 (420)
T ss_pred eeeee
Confidence 66654
No 93
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=3.2e-26 Score=229.42 Aligned_cols=275 Identities=16% Similarity=0.266 Sum_probs=231.8
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE--EEeccCCccEEE-EEEcC-CCCEEEEEeCCCeE
Q 009059 254 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITD-VRFSP-SLSRLATSSADRTV 329 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~--~~l~~h~~~V~~-l~~sp-~~~~l~t~s~dg~I 329 (545)
+.-+.+.+|...|..|++.+.. .+++++.||++++|+-...+.+ ..+.+|.+.|.+ ++|.+ ++-.|++|+.|.+|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 3456789999999999987654 8899999999999997654443 457788888887 88876 45569999999999
Q ss_pred EEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEE
Q 009059 330 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAA 408 (545)
Q Consensus 330 ~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~ 408 (545)
.+|...... ++.++.+|...|.++....++. +++|+.|.++++|.+. ++...+. |...|..+.+.|++ .+++|
T Consensus 84 ~v~~~~~~~-P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTg 157 (745)
T KOG0301|consen 84 IVFKLSQAE-PLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTG 157 (745)
T ss_pred EEEecCCCC-chhhhhccccceeeeecCCcCc--eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEec
Confidence 999998765 6999999999999999877754 5599999999999764 4444444 55678999999985 89999
Q ss_pred ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC
Q 009059 409 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 488 (545)
Q Consensus 409 ~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~ 488 (545)
+.|..|++|.- ++.+.+|.+|.+.|..+++-+++.+|.++.||.|++|++ ++ +++.++.+|.+-++++....++
T Consensus 158 saDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~g---e~l~~~~ghtn~vYsis~~~~~ 231 (745)
T KOG0301|consen 158 SADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DG---EVLLEMHGHTNFVYSISMALSD 231 (745)
T ss_pred cCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cC---ceeeeeeccceEEEEEEecCCC
Confidence 99999999976 677889999999999999999888887777999999999 44 7899999999999999988888
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEEEeccCCC-CeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 489 PSLLVIGCYETLELWNMTENKTLTLSAHDK-LVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 489 ~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~-~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
..+++++.|++++||+.. ++.....|.. .|+++.+-++|. |++|+.||.|+||
T Consensus 232 ~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 232 GLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred CeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 889999999999999987 5554444554 899999887775 7788899999998
No 94
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=232.12 Aligned_cols=306 Identities=15% Similarity=0.200 Sum_probs=245.7
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCC-----------CCEEEEEeCCCcEEEEEcCCCeEEEE-------
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-----------GKLLATGGHDKKAVLWCTESFTVKST------- 300 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spd-----------g~~latg~~dg~I~lwd~~~~~~~~~------- 300 (545)
|..+.+||+..-........+-.|...|+.+.--|- ..-++|++.|++|+||+++.+..-.+
T Consensus 345 dhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils 424 (1080)
T KOG1408|consen 345 DHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILS 424 (1080)
T ss_pred CceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccch
Confidence 556789999888877778888889999998876651 12488999999999999875211100
Q ss_pred ------------------------------eccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCccc
Q 009059 301 ------------------------------LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT 350 (545)
Q Consensus 301 ------------------------------l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~ 350 (545)
..+....|.+++.+|++++||+|..-|+++||++.+-.+ ......|..+
T Consensus 425 ~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-~~~~eAHesE 503 (1080)
T KOG1408|consen 425 ANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-TCFMEAHESE 503 (1080)
T ss_pred hhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh-hhheecccce
Confidence 012344699999999999999999999999999997665 6778899999
Q ss_pred EEEEEEeCC--CCcEEEEEcCCCcEEEEECCC-CceeeEEe-ccCCeeEEEEeCCC--CEEEEEECCCeEEEEECCCCEE
Q 009059 351 VMSLDFHPS--KEDLLCSCDNNSEIRYWSINN-GSCAGVFK-CQSGATQMRFQPRL--GRILAAAIENYISILDVETQVC 424 (545)
Q Consensus 351 V~~l~~~p~--~~~ll~s~s~dg~I~lwd~~~-~~~~~~~~-~~~~v~~l~~sp~~--~~l~~~~~dg~I~i~d~~~~~~ 424 (545)
|.|+.|+.. +..||++++.|.-|.+||+.. ..++.++. +...|+++.|...| ..+++++.|..|++--.+....
T Consensus 504 ilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~ 583 (1080)
T KOG1408|consen 504 ILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS 583 (1080)
T ss_pred eEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccC
Confidence 999999752 457899999999999999964 34455554 35679999998876 5688888888776544332111
Q ss_pred EEEecC-----CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC
Q 009059 425 RLKLQG-----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 498 (545)
Q Consensus 425 ~~~~~~-----h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 498 (545)
...+.. ....++.++..|..+++++++ |..|+||++.+++..+....-..|.+....+...|.|.||++.+.|.
T Consensus 584 g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdk 663 (1080)
T KOG1408|consen 584 GRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDK 663 (1080)
T ss_pred ceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCC
Confidence 112221 235789999999999999999 99999999999854444444445667888999999999999999999
Q ss_pred eEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 499 TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 499 ~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++.+||..+++++ ...+|...|+.+.|.+|-+.|++.+.||+|.||+
T Consensus 664 tl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 664 TLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred ceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 9999999999999 8889999999999999999999999999999995
No 95
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=5.4e-25 Score=217.73 Aligned_cols=263 Identities=13% Similarity=0.112 Sum_probs=207.0
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeeeEeccCcccEEEE
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 354 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l-~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l 354 (545)
+++++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||+.+++. ...+..+. .+..+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~-~~~~~ 78 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGP-DPELF 78 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCC-CccEE
Confidence 5788999999999999999998888876544 6789999999876 5667889999999987764 44454443 35678
Q ss_pred EEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCC-eEEEEECCCCEEEEEecCCCC
Q 009059 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKN 433 (545)
Q Consensus 355 ~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg-~I~i~d~~~~~~~~~~~~h~~ 433 (545)
+|+|+++.+++++..++.|++||+.+.+.+..+.....+..++|+|++..++++..++ .+.+||.++++....+. ...
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~ 157 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQ 157 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCC
Confidence 9999988787777778999999999988888777666678999999999988888765 57788999887766544 234
Q ss_pred CEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeC-------CCceEEEEEcCCCCEEEEE-EcCCeEEEE
Q 009059 434 QVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHPTFPSLLVI-GCYETLELW 503 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~-------~~~v~~~~~sp~~~~l~~~-~~dg~I~iw 503 (545)
.+.+++|+|++++|++++ ++.|++||+.++ ..+..+..+ ......++|+|++++++++ +.++.|.+|
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATR---KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV 234 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc---eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence 567899999999886554 889999999887 344433321 1123568899999986665 456689999
Q ss_pred eCCCCeEEEeccCCCCeeEEEEeCCCCEEEEE-eCCCcEEEcC
Q 009059 504 NMTENKTLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 545 (545)
Q Consensus 504 d~~~~~~~~~~~h~~~V~~l~~spd~~~las~-s~Dg~I~iWd 545 (545)
|+.+++......+...+.+++|+|++++|+++ +.+|.|+|||
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 235 DAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred ECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 99988877544556689999999999999876 4689999997
No 96
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=6.9e-26 Score=203.31 Aligned_cols=234 Identities=19% Similarity=0.295 Sum_probs=211.3
Q ss_pred EeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC
Q 009059 300 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379 (545)
Q Consensus 300 ~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~ 379 (545)
.+.+|..+++.|.|+.+|.+|++|+.|.++.||-..+++. +-++.+|.+.|+|++...+...++ +|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-lGty~GHtGavW~~Did~~s~~li-TGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-LGTYDGHTGAVWCCDIDWDSKHLI-TGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-eeeecCCCceEEEEEecCCcceee-eccccceeEEEEcC
Confidence 4678999999999999999999999999999999887775 899999999999999998866555 99999999999999
Q ss_pred CCceeeEEeccCCeeEEEEeCCCCEEEEEEC-----CCeEEEEECC-------CCEEEEEecCCCCCEEEEEEcCCCCEE
Q 009059 380 NGSCAGVFKCQSGATQMRFQPRLGRILAAAI-----ENYISILDVE-------TQVCRLKLQGHKNQVHSVCWNTSGEYL 447 (545)
Q Consensus 380 ~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-----dg~I~i~d~~-------~~~~~~~~~~h~~~I~~l~~sp~g~~l 447 (545)
+|+++..++....|..+.|+.+++++++... .+.|.+||++ ..++...+..+...++.+.|.|-+++|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 9999999999999999999999988888775 3579999998 456678888889999999999999999
Q ss_pred EEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEe
Q 009059 448 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 526 (545)
Q Consensus 448 ~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~s 526 (545)
++|. ||.|.+||++++. ..+.....|...|+.+.++++..++++++.|.+-++||+.+..++.......+|++.+++
T Consensus 163 i~Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EEecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecc
Confidence 9999 9999999999874 456666778899999999999999999999999999999999999777788999999999
Q ss_pred CCCCEEEEEeC
Q 009059 527 TVNGMVASASH 537 (545)
Q Consensus 527 pd~~~las~s~ 537 (545)
|....++.|+.
T Consensus 241 P~~d~VilgGG 251 (327)
T KOG0643|consen 241 PLLDHVILGGG 251 (327)
T ss_pred cccceEEecCC
Confidence 98887776653
No 97
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=4.2e-25 Score=230.42 Aligned_cols=245 Identities=17% Similarity=0.198 Sum_probs=187.6
Q ss_pred CcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCe--------EEEEeccCCc
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQ 306 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spd-g~~latg~~dg~I~lwd~~~~~--------~~~~l~~h~~ 306 (545)
++.+..+++|+..+. ..+..+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++. .+..+.+|..
T Consensus 50 GG~~gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 445677888887664 356788999999999999996 7899999999999999997532 3456789999
Q ss_pred cEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee
Q 009059 307 WITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 385 (545)
Q Consensus 307 ~V~~l~~sp~~~~-l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~ 385 (545)
.|.+++|+|++.. |++++.|++|+|||+.++.. +..+. |...|.+++|+|+|. +|++++.|+.|++||+++++.+.
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEE
Confidence 9999999998875 57899999999999998764 44454 567899999999976 55577789999999999999888
Q ss_pred EEeccCC-ee-----EEEEeCCCCEEEEEECCC----eEEEEECCC-CEEEEEec--CCCCCEEEEEEcCCCCEEEEEe-
Q 009059 386 VFKCQSG-AT-----QMRFQPRLGRILAAAIEN----YISILDVET-QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS- 451 (545)
Q Consensus 386 ~~~~~~~-v~-----~l~~sp~~~~l~~~~~dg----~I~i~d~~~-~~~~~~~~--~h~~~I~~l~~sp~g~~l~s~s- 451 (545)
.+..+.. +. ...|+++++++++++.++ .|+|||++. ..++..+. .+.+.+......++|.++++|.
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG 283 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG 283 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence 8775543 22 223458888999988764 799999995 45555443 2333444444455688888887
Q ss_pred CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC
Q 009059 452 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 488 (545)
Q Consensus 452 dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~ 488 (545)
|+.|++|++..+. ...+..+. +..++..++|.|..
T Consensus 284 D~tIr~~e~~~~~-~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 284 DGNCRYYQHSLGS-IRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred CCeEEEEEccCCc-EEeecccc-cCCCccceEEcccc
Confidence 9999999997652 23333333 56778889999965
No 98
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=3.8e-26 Score=240.18 Aligned_cols=252 Identities=22% Similarity=0.343 Sum_probs=214.0
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC------------------CeEEEEeccCCccEEEEEEcC
Q 009059 254 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSP 315 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~------------------~~~~~~l~~h~~~V~~l~~sp 315 (545)
+.+.....|.+.|+|+.|+|||++||+|+.|+.|.||.... .+.+..+.+|...|.+++|+|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 34677889999999999999999999999999999998662 246678899999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-----
Q 009059 316 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----- 390 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~----- 390 (545)
++.+|++++.|++|.||+..+. ..+..+.+|.+.|..+.|.|-|. ++|+-+.|++|++|++.+..+.+.+..+
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESP 217 (942)
T ss_pred CccEEEEecccceEEEEccccc-eeeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence 9999999999999999999998 45999999999999999999985 5669999999999998876666665432
Q ss_pred --CCeeEEEEeCCCCEEEEEEC----CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCC-----CC------------EE
Q 009059 391 --SGATQMRFQPRLGRILAAAI----ENYISILDVETQVCRLKLQGHKNQVHSVCWNTS-----GE------------YL 447 (545)
Q Consensus 391 --~~v~~l~~sp~~~~l~~~~~----dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~-----g~------------~l 447 (545)
.....+.|+|+|.+|++... ...+.|.+-.+.+.-..+-+|.+++.++.|+|. .. .+
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~ 297 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIA 297 (942)
T ss_pred CcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEE
Confidence 23678999999999988764 347999999999989999999999999999982 11 56
Q ss_pred EEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe
Q 009059 448 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 448 ~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 509 (545)
|+|+ |++|.||..........++. .....|..+.|+|||..|++++.||+|.++.+++.+
T Consensus 298 AvgSqDrSlSVW~T~~~RPl~vi~~--lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 298 AVGSQDRSLSVWNTALPRPLFVIHN--LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEecCCccEEEEecCCCCchhhhhh--hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 7777 99999999866543333333 346789999999999999999999999999987643
No 99
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.8e-26 Score=207.63 Aligned_cols=276 Identities=20% Similarity=0.318 Sum_probs=220.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEec
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~ 345 (545)
-.||.|++.|.+||+|..||.|.|||+.+...-+.+.+|..+|++++|+++|+.|+|++.|..|.+||+..+.. ++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~-l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP-LKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc-eeEEE
Confidence 78999999999999999999999999999998899999999999999999999999999999999999998884 66655
Q ss_pred cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec------cCCeeEEEEeCCCCEEEEEECCCeEEEEEC
Q 009059 346 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAIENYISILDV 419 (545)
Q Consensus 346 ~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~------~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~ 419 (545)
...+|+.+.|+|...+.++++-.+..-.+-++..+.. ..+.. .....+..|.+.|+++++|...|.+.+||.
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 5789999999998777666665555555555554221 11111 112344568999999999999999999999
Q ss_pred CCCEEEEEecCCC-CCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC------CcceEEEEe--eCCCceEEEEEcCCCC
Q 009059 420 ETQVCRLKLQGHK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KGECIHELS--CTGNKFHSCVFHPTFP 489 (545)
Q Consensus 420 ~~~~~~~~~~~h~-~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~------~~~~i~~~~--~~~~~v~~~~~sp~~~ 489 (545)
++.+++..++-.. ..|..+.++..|++|+.-+ |..||.|++..-. ..+..+.+. .....-.+|+|+.+|.
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge 262 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE 262 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence 9999998887665 7899999999999999988 9999999986321 111111111 1123456889999999
Q ss_pred EEEEEEcCC-eEEEEeCCCCeEE-EeccCC-CCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 490 SLLVIGCYE-TLELWNMTENKTL-TLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 490 ~l~~~~~dg-~I~iwd~~~~~~~-~~~~h~-~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|+++++... .++||....|.++ .+.+.. .....+.|+|-...|++- ..|.|+||.
T Consensus 263 Yv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 263 YVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 988887554 8999999999988 555555 567889999999888888 678999993
No 100
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.1e-26 Score=217.31 Aligned_cols=233 Identities=21% Similarity=0.309 Sum_probs=200.8
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 009059 260 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 339 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~ 339 (545)
++|...|.+++.|+||+|||+|+.|..|.||+..+++.+..+.+|.+.|.+++|-.....|++++.|+.|++|+++...+
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 48999999999999999999999999999999999999999999999999999998888999999999999999998776
Q ss_pred eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEEC
Q 009059 340 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV 419 (545)
Q Consensus 340 ~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~ 419 (545)
+.++.+|.+.|..|....- ..++.+|+.|+++++|++.....+....+.+.+.|++|-.+ ..+++|+.+|.|.+|++
T Consensus 279 -vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 279 -VETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSL 355 (479)
T ss_pred -HHHHhCCccceeeechhcc-cceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeee
Confidence 8899999999999998765 46777888999999999965444444444557889999877 88999999999999999
Q ss_pred CCCEEEEEecC-C-----------CCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC-CcceEEEEeeCCCceEEEEEc
Q 009059 420 ETQVCRLKLQG-H-----------KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS-KGECIHELSCTGNKFHSCVFH 485 (545)
Q Consensus 420 ~~~~~~~~~~~-h-----------~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~-~~~~i~~~~~~~~~v~~~~~s 485 (545)
-..+++++... | ..+|++++..|...++++|+ +|.|++|-+..+- ....+..+. ..+.|++++|+
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~ 434 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFS 434 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEc
Confidence 99888776532 2 23899999999999999999 9999999998763 234555555 56789999999
Q ss_pred CCCCEEEEEEc
Q 009059 486 PTFPSLLVIGC 496 (545)
Q Consensus 486 p~~~~l~~~~~ 496 (545)
++|++|++|..
T Consensus 435 ~sgk~ivagiG 445 (479)
T KOG0299|consen 435 NSGKRIVAGIG 445 (479)
T ss_pred cCCCEEEEecc
Confidence 99997777744
No 101
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.4e-25 Score=215.10 Aligned_cols=283 Identities=17% Similarity=0.252 Sum_probs=235.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC--CeEEEEeccCCccEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCC
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~--~~~~~~l~~h~~~V~~l~~sp~~~-~l~t~s~dg~I~vwd~~~~~ 338 (545)
..+.|+++.|+|...+|++++.|+.++||.++. ...+..+.--..+|.+.+|.|+|. .+++++....+..||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 457899999999999999999999999998753 445666666778999999999999 89999999999999998876
Q ss_pred ee-eeEeccCc-ccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEE
Q 009059 339 YS-LRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 416 (545)
Q Consensus 339 ~~-~~~~~~h~-~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i 416 (545)
.. +....++. ..+.....++++. +++..+..|.|.+....+++.+..++..+.+..++|+.++..|++++.+|.|++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 42 22333343 3566778889976 555888899999999999999999999999999999999999999999999999
Q ss_pred EECCCCEEEEEecCCCC-CEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC---CCcceEEEEeeCCCceEEEEEcCCCCEE
Q 009059 417 LDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-DELVRVWSIGSG---SKGECIHELSCTGNKFHSCVFHPTFPSL 491 (545)
Q Consensus 417 ~d~~~~~~~~~~~~h~~-~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~---~~~~~i~~~~~~~~~v~~~~~sp~~~~l 491 (545)
||++...+++.+....+ .-+++|.++++.|||+|+ .|.|.|||..+. ....++..+......|+++.|+++...|
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL 450 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL 450 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence 99999999988874322 336778889999999999 889999996542 3346666777777889999999999988
Q ss_pred EEEEcC--CeEEEEeCCCCeEE-Eec---cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 492 LVIGCY--ETLELWNMTENKTL-TLS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 492 ~~~~~d--g~I~iwd~~~~~~~-~~~---~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+.++.. ..+++-.+.+.... .+. ..-+.|+||+|+|.+.+||.|..+|.|.+|+
T Consensus 451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 887764 48888888776666 222 2346799999999999999999999999995
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.1e-26 Score=226.97 Aligned_cols=307 Identities=16% Similarity=0.219 Sum_probs=248.8
Q ss_pred CCcccceeeeeecCCceee---EEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--eEEEEeccCCccEE
Q 009059 235 ADPRDRVGRSAEVGKGFTF---TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWIT 309 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~---~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~--~~~~~l~~h~~~V~ 309 (545)
.+++|..+++|+...-... ..+..++.|.+.|..++...+++.|++++.|-+|++|+...+ -++.++..|.+.|.
T Consensus 42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVk 121 (735)
T KOG0308|consen 42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVK 121 (735)
T ss_pred ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchhe
Confidence 4567888888887655432 236788999999999999999999999999999999999876 56788899999999
Q ss_pred EEEE-cCCCCEEEEEeCCCeEEEEECCCCCe---------eeeEec-cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEEC
Q 009059 310 DVRF-SPSLSRLATSSADRTVRVWDTENPDY---------SLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 378 (545)
Q Consensus 310 ~l~~-sp~~~~l~t~s~dg~I~vwd~~~~~~---------~~~~~~-~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~ 378 (545)
|+++ .++...+|+|+.|+.|.+||++++.. ....+. ++...|++++.++.+ .++++|+..+.|++||.
T Consensus 122 cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDp 200 (735)
T KOG0308|consen 122 CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDP 200 (735)
T ss_pred eeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEecc
Confidence 9999 77888999999999999999996522 122333 888999999999987 67779999999999999
Q ss_pred CCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEE
Q 009059 379 NNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVR 456 (545)
Q Consensus 379 ~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~ 456 (545)
++++.+..+. |...|..+..+.+|..++++++||+|++||+...+++.++..|...|+++..+|+-.++++|+ |+.|.
T Consensus 201 rt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~ 280 (735)
T KOG0308|consen 201 RTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIY 280 (735)
T ss_pred ccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEE
Confidence 9988777666 445699999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred EEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEe-----------------------
Q 009059 457 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL----------------------- 513 (545)
Q Consensus 457 vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~----------------------- 513 (545)
.-|+++......+ -....+|..+..+....-+.+++.|+.|+-|-..-...+..
T Consensus 281 ~Tdl~n~~~~tli---ck~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~ 357 (735)
T KOG0308|consen 281 RTDLRNPAKSTLI---CKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPD 357 (735)
T ss_pred ecccCCchhheEe---ecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCc
Confidence 9999986322222 22456677777776555568888888999886532211100
Q ss_pred --ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 514 --SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 514 --~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
......|...++-.|.++++|-..+|.+.+||
T Consensus 358 ~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 358 SVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD 391 (735)
T ss_pred eeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence 00112233445556788999999999999997
No 103
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8.1e-24 Score=185.48 Aligned_cols=248 Identities=18% Similarity=0.300 Sum_probs=206.9
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCeE---EEEeccCCccEEEEEEcCC----CCEEEEEe-C
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTV---KSTLEEHTQWITDVRFSPS----LSRLATSS-A 325 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~--~~~~---~~~l~~h~~~V~~l~~sp~----~~~l~t~s-~ 325 (545)
.+.-+.|.+.|+|.+|+|+|++||+|+.|++|++.-.. +... ...+.-|.+.|.+++|-.+ +.+|++++ .
T Consensus 82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence 45567899999999999999999999999999987543 3222 2456679999999999653 55677664 3
Q ss_pred CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc--------CCeeEEE
Q 009059 326 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------SGATQMR 397 (545)
Q Consensus 326 dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~--------~~v~~l~ 397 (545)
|..|.+-|...+.. +..+.+|++.|.++- +-+ ..++++|+.|.+|++||++-..++.++... ..|..++
T Consensus 162 dc~iy~tdc~~g~~-~~a~sghtghilaly-swn-~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~ 238 (350)
T KOG0641|consen 162 DCKIYITDCGRGQG-FHALSGHTGHILALY-SWN-GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVA 238 (350)
T ss_pred cceEEEeecCCCCc-ceeecCCcccEEEEE-Eec-CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEE
Confidence 67778888887764 889999999999874 222 468889999999999999988888876421 3488999
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC-CcceEEEEeeC
Q 009059 398 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS-KGECIHELSCT 475 (545)
Q Consensus 398 ~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~-~~~~i~~~~~~ 475 (545)
..|.|..|+++..|....+||++.++.+..+..|...|.|+.|+|...|+.+++ |..|++-|+...- ....+.....|
T Consensus 239 vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh 318 (350)
T KOG0641|consen 239 VDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH 318 (350)
T ss_pred ECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec
Confidence 999999999999999999999999999999999999999999999999999999 9999999987532 12344556678
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 476 GNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 476 ~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
...+..|.|+|..-.+++.+.|.++.+|-+.
T Consensus 319 kdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 319 KDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cCceEEEEecCccceeeeccCcceEEEeccC
Confidence 9999999999999889999999999999764
No 104
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=8.4e-25 Score=199.63 Aligned_cols=252 Identities=17% Similarity=0.237 Sum_probs=200.9
Q ss_pred CcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcC
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 315 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp 315 (545)
.++|..+|+|++.....+.. +....|.++|.+++|+.||..+++|+.|+.+++||+.+++ ...+..|.++|.++.|-+
T Consensus 46 ~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~ 123 (347)
T KOG0647|consen 46 GSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVP 123 (347)
T ss_pred cccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEec
Confidence 45578889998887433333 6677899999999999999999999999999999999984 456678999999999987
Q ss_pred CCC--EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee-EE--ecc
Q 009059 316 SLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VF--KCQ 390 (545)
Q Consensus 316 ~~~--~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~-~~--~~~ 390 (545)
... .|+||+.|++|+.||++.... +.++. ..+.|+++..- ..+++.+..+..|.+|+++++.... .. ...
T Consensus 124 ~~~~~cl~TGSWDKTlKfWD~R~~~p-v~t~~-LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk 198 (347)
T KOG0647|consen 124 GMNYQCLVTGSWDKTLKFWDTRSSNP-VATLQ-LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLK 198 (347)
T ss_pred CCCcceeEecccccceeecccCCCCe-eeeee-ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcCccc
Confidence 655 899999999999999997654 55554 45678888775 3456677779999999997654332 12 123
Q ss_pred CCeeEEEEeCCCCEEEEEECCCeEEEEECCCC--EEEEEecCCCC---------CEEEEEEcCCCCEEEEEe-CCcEEEE
Q 009059 391 SGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQGHKN---------QVHSVCWNTSGEYLASVS-DELVRVW 458 (545)
Q Consensus 391 ~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~---------~I~~l~~sp~g~~l~s~s-dg~I~vw 458 (545)
-.+.++++..+...++.|+-+|.+.|..+..+ +.-..|+.|.. .|++|+|+|....|++++ ||++.+|
T Consensus 199 ~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FW 278 (347)
T KOG0647|consen 199 WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFW 278 (347)
T ss_pred ceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEe
Confidence 45889999998888899999999999988876 44556666652 578899999877777766 9999999
Q ss_pred EcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC
Q 009059 459 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 497 (545)
Q Consensus 459 d~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d 497 (545)
|-... ..+.+...+..+|+++.|+.+|.+++.+...
T Consensus 279 Dkdar---~kLk~s~~~~qpItcc~fn~~G~ifaYA~gY 314 (347)
T KOG0647|consen 279 DKDAR---TKLKTSETHPQPITCCSFNRNGSIFAYALGY 314 (347)
T ss_pred cchhh---hhhhccCcCCCccceeEecCCCCEEEEEeec
Confidence 98665 5677777899999999999999988776553
No 105
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=9.5e-26 Score=217.90 Aligned_cols=277 Identities=18% Similarity=0.265 Sum_probs=232.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC---eEEEEec--cCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~---~~~~~l~--~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
.|..-|.++.+|...+.+.||+ .|.|+|||+..- .++..+. .....|.++.+.|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 5888899999999999999998 489999998642 2333332 346779999999999999999999999999998
Q ss_pred CCCeeee-EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCCEEEEEECCCe
Q 009059 336 NPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 336 ~~~~~~~-~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
.....++ .+....-.+++++.+||.+ +.++|..||.|.|||+.+...++.|.. ..++.|+.++++|..|.+|+-|++
T Consensus 496 apTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 7664333 2333334678899999965 555777899999999999999998874 567999999999999999999999
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEE
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 492 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~ 492 (545)
|+.||+++++.+.... ....|.++.++|.+.+|++|- .+.+.|....... .+.+..|...|.++.|.+.|++++
T Consensus 575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~----kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE----KYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCcc----ceeecccccEEEEEEecccCceee
Confidence 9999999987666544 567899999999999999999 7788888876542 345566889999999999999999
Q ss_pred EEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 493 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 493 ~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
+.+.|+-+..|.+.-+..+.-......|.++.++.|.+||+||+.|....||
T Consensus 650 StGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred ecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence 9999999999999988877666677899999999999999999999877776
No 106
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=2.7e-23 Score=205.51 Aligned_cols=278 Identities=14% Similarity=0.121 Sum_probs=208.5
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~l-atg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
.+..+++|+..++.. +..+..|.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|+|+
T Consensus 9 ~d~~v~~~d~~t~~~---~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~ 83 (300)
T TIGR03866 9 KDNTISVIDTATLEV---TRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPN 83 (300)
T ss_pred CCCEEEEEECCCCce---EEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCC
Confidence 456788899877754 344555543 6789999999976 5667889999999999888877765544 567899999
Q ss_pred CCEEEEE-eCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC-CcEEEEECCCCceeeEEeccCCee
Q 009059 317 LSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKCQSGAT 394 (545)
Q Consensus 317 ~~~l~t~-s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d-g~I~lwd~~~~~~~~~~~~~~~v~ 394 (545)
++.++++ ..|+.|++||+.+... +..+. +...+.+++|+|++..++ ++..+ ..+.+||..+++..........+.
T Consensus 84 g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~dg~~l~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 160 (300)
T TIGR03866 84 GKILYIANEDDNLVTVIDIETRKV-LAEIP-VGVEPEGMAVSPDGKIVV-NTSETTNMAHFIDTKTYEIVDNVLVDQRPR 160 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCCeE-EeEee-CCCCcceEEECCCCCEEE-EEecCCCeEEEEeCCCCeEEEEEEcCCCcc
Confidence 9977655 5689999999987553 44444 234578899999987665 44444 457788999888776665556678
Q ss_pred EEEEeCCCCEEEEEE-CCCeEEEEECCCCEEEEEecCCC-------CCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCC
Q 009059 395 QMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHK-------NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS 464 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~-------~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~ 464 (545)
.+.|++++..+++++ .++.|++||+++++.+..+..+. .....++|+|++++++++. ++.|.+||+.+.
T Consensus 161 ~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~- 239 (300)
T TIGR03866 161 FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY- 239 (300)
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-
Confidence 899999998887665 58999999999988766554221 1235688999999865543 668999999876
Q ss_pred CcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCCeEEEEeCCCCeEEEeccCCCCeeEEEEeC
Q 009059 465 KGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVSSLAAST 527 (545)
Q Consensus 465 ~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp 527 (545)
+.+..+ .+...+.+++|+|++.+|+++. .++.|.+||+.+++++.........+.++++|
T Consensus 240 --~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 240 --EVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred --cEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 333333 2455789999999999998874 58899999999999873334556678888875
No 107
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.2e-25 Score=199.46 Aligned_cols=248 Identities=21% Similarity=0.288 Sum_probs=203.4
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC---eEEEEeccCCccEEEEEEcC--CCCEEEEEeCCCeEEEEE
Q 009059 259 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 333 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~---~~~~~l~~h~~~V~~l~~sp--~~~~l~t~s~dg~I~vwd 333 (545)
-..|.+.|..+...--|+.|||++.|++|+|+..+.. +++.+|.+|.++|+.++|.. -|.+||+++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 4578999999998889999999999999999998753 57789999999999999965 699999999999999999
Q ss_pred CCCCCee-eeEeccCcccEEEEEEeCCCC-cEEEEEcCCCcEEEEECCCC-c-ee--eEEeccCCeeEEEEeCC---C--
Q 009059 334 TENPDYS-LRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNG-S-CA--GVFKCQSGATQMRFQPR---L-- 402 (545)
Q Consensus 334 ~~~~~~~-~~~~~~h~~~V~~l~~~p~~~-~ll~s~s~dg~I~lwd~~~~-~-~~--~~~~~~~~v~~l~~sp~---~-- 402 (545)
-+++... ...+..|...|++++|-|.+- .+|++++.||.|.+.+.+.. . .. ....+.-++++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 9887542 345678999999999998753 45678889999999998764 1 11 12335567999999886 4
Q ss_pred ---------CEEEEEECCCeEEEEECCCC--EEEEEecCCCCCEEEEEEcCCC----CEEEEEe-CCcEEEEEcCCCCCc
Q 009059 403 ---------GRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIGSGSKG 466 (545)
Q Consensus 403 ---------~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~~I~~l~~sp~g----~~l~s~s-dg~I~vwd~~~~~~~ 466 (545)
.+|++++.|+.|+||+...+ .....+.+|.+.|..++|.|.- .+|++++ ||+|.||..+.....
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 46999999999999999875 3345688999999999999964 5799999 999999998743222
Q ss_pred ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 467 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 467 ~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
-....+......+..+.|+..|+.|++++.|+.|.+|.-+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 2333344456789999999999999999999999999654
No 108
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.5e-24 Score=195.59 Aligned_cols=248 Identities=19% Similarity=0.275 Sum_probs=203.4
Q ss_pred CCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEc-CCCc
Q 009059 294 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSE 372 (545)
Q Consensus 294 ~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s-~dg~ 372 (545)
..++.+.+......|+++.|+++|.+|++++.|.+++|||..+++. ++++..++-.|..++|......++.+.. .|.+
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-eeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence 3455566767788999999999999999999999999999999886 7888777778888888766555553332 4789
Q ss_pred EEEEECCCCceeeEEeccC-CeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 009059 373 IRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 373 I~lwd~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s 451 (545)
|+..++.+.+.++.|..+. .|..++.+|.+..+++++.|++|++||++..++.-.+... .-..++|+|.|-++|++.
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALAN 159 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEec
Confidence 9999999999999998654 5999999999999999999999999999987776655433 334578999999999999
Q ss_pred -CCcEEEEEcCCCCCcceEEEEe---eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCC---eeEE
Q 009059 452 -DELVRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKL---VSSL 523 (545)
Q Consensus 452 -dg~I~vwd~~~~~~~~~i~~~~---~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~---V~~l 523 (545)
.+.|++||++.-.+ .+..++. ......+.+.|+|+|++|+.+...+.+++.|.-+|... .+..+... ....
T Consensus 160 ~~~~IkLyD~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred CCCeEEEEEecccCC-CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeE
Confidence 44999999998644 2223333 34677899999999999999999999999999999877 45444322 2567
Q ss_pred EEeCCCCEEEEEeCCCcEEEcC
Q 009059 524 AASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 524 ~~spd~~~las~s~Dg~I~iWd 545 (545)
.|+||++++++|+.||+|.+|+
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEE
Confidence 8999999999999999999996
No 109
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=3.6e-23 Score=200.46 Aligned_cols=257 Identities=17% Similarity=0.266 Sum_probs=210.8
Q ss_pred eeeeeecCCceeeEEEEeecCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCE
Q 009059 241 VGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 319 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~ 319 (545)
-...|++..+..++...+++.+. .-|.|++|.++|. ++||..+|.|.||+..+.+..+....|.+.|.+++...+|.+
T Consensus 223 H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl 301 (626)
T KOG2106|consen 223 HLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL 301 (626)
T ss_pred eEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE
Confidence 45678888888888888888765 4699999999985 678999999999999888887777799999999999999875
Q ss_pred EEEEeCCCeEEEEECCCCCe----------e-----------------------------eeEeccCcccEEEEEEeCCC
Q 009059 320 LATSSADRTVRVWDTENPDY----------S-----------------------------LRTFTGHSTTVMSLDFHPSK 360 (545)
Q Consensus 320 l~t~s~dg~I~vwd~~~~~~----------~-----------------------------~~~~~~h~~~V~~l~~~p~~ 360 (545)
|- |+.|..|..||-.-.+. . .....+|....+.++.+|+.
T Consensus 302 lS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~ 380 (626)
T KOG2106|consen 302 LS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK 380 (626)
T ss_pred ee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh
Confidence 55 99999999998321000 0 01234688899999999996
Q ss_pred CcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEE
Q 009059 361 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW 440 (545)
Q Consensus 361 ~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~ 440 (545)
+. +++|+.|+.+++|+ ..+.+.......++.++.|+|.+ .+++|+..|...+.|.++...+..-.. ..+++++.|
T Consensus 381 ~q-~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~y 455 (626)
T KOG2106|consen 381 NQ-LLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRY 455 (626)
T ss_pred hh-eeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEE
Confidence 55 45999999999999 66777777777899999999997 999999999999999999766655554 889999999
Q ss_pred cCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 441 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 441 sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
+|+|.+||.|+ |+.|+||.+..... .....-..+..+|+.+.|++|+++|.+-+.|-.|..|..
T Consensus 456 sp~G~~lAvgs~d~~iyiy~Vs~~g~-~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 456 SPDGAFLAVGSHDNHIYIYRVSANGR-KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred cCCCCEEEEecCCCeEEEEEECCCCc-EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 99999999999 99999999976543 222233345589999999999999998888888888843
No 110
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.2e-25 Score=199.36 Aligned_cols=243 Identities=23% Similarity=0.405 Sum_probs=200.4
Q ss_pred ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeeeEeccCcccEEEEEE-eCCCCcEEEEEcCCCcEEEEEC
Q 009059 302 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEIRYWSI 378 (545)
Q Consensus 302 ~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~-~p~~~~ll~s~s~dg~I~lwd~ 378 (545)
..|.+.|.++...--|++||||+.|++|+|+..++.. ..+..+.+|.++|+.++| +|.-..+|++|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4688999998888889999999999999999998765 467899999999999999 5666789999999999999999
Q ss_pred CCCceeeEEe---ccCCeeEEEEeCC--CCEEEEEECCCeEEEEECCCC---EEEEEecCCCCCEEEEEEcCC---C---
Q 009059 379 NNGSCAGVFK---CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTS---G--- 444 (545)
Q Consensus 379 ~~~~~~~~~~---~~~~v~~l~~sp~--~~~l~~~~~dg~I~i~d~~~~---~~~~~~~~h~~~I~~l~~sp~---g--- 444 (545)
.+++-.+... +...+++++|.|. |-.|++++.||.|.|++.+.. ........|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 8885544333 4567999999986 445788889999999988754 233445679999999999986 4
Q ss_pred --------CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC----CEEEEEEcCCeEEEEeCCCC---
Q 009059 445 --------EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTEN--- 508 (545)
Q Consensus 445 --------~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~----~~l~~~~~dg~I~iwd~~~~--- 508 (545)
+.|++|+ |..|+||+...+ ....-.++..|...|+.++|.|.- .+|++++.||++.||-.+..
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 5688888 999999999886 333444588999999999999965 46999999999999976522
Q ss_pred -eEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 509 -KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 509 -~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+...+......++.+.||..|++|+.++.|+.|.+|+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 2223445678899999999999999999999999995
No 111
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=7.7e-25 Score=219.55 Aligned_cols=256 Identities=18% Similarity=0.302 Sum_probs=221.6
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEE-EEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEE
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES-CHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 312 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~-l~~sp-dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~ 312 (545)
..++|+..++|+-. +..+.+...+.+|.+-|.+ ++|-+ ++-.|++|+.|..|.+|......+..++++|...|.|+.
T Consensus 30 s~sRd~t~~vw~~~-~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls 108 (745)
T KOG0301|consen 30 SGSRDGTVKVWAKK-GKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLS 108 (745)
T ss_pred ecCCCCceeeeecc-CcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeee
Confidence 56778899999764 3445566778899999888 88886 555699999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-C
Q 009059 313 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-S 391 (545)
Q Consensus 313 ~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~ 391 (545)
...++. +++|+.|.+++||.... +...+.+|...|+++++.|++ .+++|+.|.+|++|.- ++++++|..+ .
T Consensus 109 ~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD 180 (745)
T KOG0301|consen 109 IGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTD 180 (745)
T ss_pred cCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchhhhhccchh
Confidence 887777 99999999999998864 355689999999999999986 4559999999999975 7778888754 4
Q ss_pred CeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEE
Q 009059 392 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 392 ~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~ 470 (545)
.|..+++.++ ..|++++.||.|+.|++ +++++..+.+|...|+++....++..+++++ |++++||+.. .|..
T Consensus 181 ~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----e~~q 253 (745)
T KOG0301|consen 181 CVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----ECVQ 253 (745)
T ss_pred heeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----ceEE
Confidence 5889999987 67999999999999999 8889999999999999999777788888877 9999999875 6778
Q ss_pred EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 471 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
.+......|+++.+-++|. |++|++||.|+||....
T Consensus 254 ~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 254 VITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 8877777899999999988 99999999999998764
No 112
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=8e-26 Score=210.75 Aligned_cols=263 Identities=14% Similarity=0.220 Sum_probs=222.2
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
.++.|+.+++|+..... ++.++++|.+.|..|++.. ..+++++.|++|+.|.++. .++.++.+ ...+..|.-+
T Consensus 84 SGs~DG~VkiWnlsqR~---~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~ 156 (433)
T KOG0268|consen 84 SGSCDGEVKIWNLSQRE---CIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHH 156 (433)
T ss_pred ccccCceEEEEehhhhh---hhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccc
Confidence 45668889999988764 5678899999999999987 6788899999999999875 46666643 3457777777
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCee
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT 394 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~ 394 (545)
..+..++||+.+ |.|||..... ++..+.-....|.++.|+|....+|++|+.|+.|.+||++++.++..+...-..+
T Consensus 157 ~~~~~FaTcGe~--i~IWD~~R~~-Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN 233 (433)
T KOG0268|consen 157 RKNSVFATCGEQ--IDIWDEQRDN-PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN 233 (433)
T ss_pred cccccccccCce--eeecccccCC-ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc
Confidence 778889998765 9999998654 5788877778899999999999999999999999999999999999888888899
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCC-EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEE
Q 009059 395 QMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 472 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~ 472 (545)
.++|+|..-.++++..|..++.||++.. .++..+.+|...|.++.|+|.|+-+++|+ |.+|+||.+..+......++-
T Consensus 234 ~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk 313 (433)
T KOG0268|consen 234 TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK 313 (433)
T ss_pred ceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh
Confidence 9999997777888888999999999975 56778889999999999999999999999 999999999877443322221
Q ss_pred eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe
Q 009059 473 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 473 ~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 509 (545)
.-..|.++.|+.|.+++++|+.|+.|++|.....+
T Consensus 314 --RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 314 --RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred --hhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 23568999999999999999999999999876544
No 113
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=8.2e-25 Score=215.72 Aligned_cols=289 Identities=18% Similarity=0.249 Sum_probs=229.7
Q ss_pred eeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCC--EEEEEeCCCe
Q 009059 251 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRT 328 (545)
Q Consensus 251 ~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~--~l~t~s~dg~ 328 (545)
+...+-..++||++.|.||...|.|.+||+|+.||+|+||.+.+|.++.++. ..+.|.||+|+|.+. .||++-.+ .
T Consensus 388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~ 465 (733)
T KOG0650|consen 388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-C 465 (733)
T ss_pred CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-c
Confidence 4555667899999999999999999999999999999999999999998886 445899999999654 44444333 2
Q ss_pred EEEEEC---------------------------------CC---CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC--
Q 009059 329 VRVWDT---------------------------------EN---PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-- 370 (545)
Q Consensus 329 I~vwd~---------------------------------~~---~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d-- 370 (545)
+.|-+. .. ...-++....|...|..+.||..|.++..++..+
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN 545 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence 333322 10 0111234445888999999999998877655433
Q ss_pred CcEEEEECCCCceeeEE-eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEE
Q 009059 371 SEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 449 (545)
Q Consensus 371 g~I~lwd~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s 449 (545)
..|.|+++........| +..+.+.++.|+|...++++++ ...|+|||+.....++.+......|..++.+|.|..|+.
T Consensus 546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 46889999877766666 3456799999999977666655 578999999988877777777889999999999999999
Q ss_pred Ee-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe------CCCCe-EE---EeccCCC
Q 009059 450 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN------MTENK-TL---TLSAHDK 518 (545)
Q Consensus 450 ~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd------~~~~~-~~---~~~~h~~ 518 (545)
++ |+.+..||+.-.. ....++..|...+++++||+..+.+++|+.|+++.||- +-.+- ++ .+.+|..
T Consensus 625 gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~ 702 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK 702 (733)
T ss_pred ecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence 98 9999999997654 45667888999999999999999999999999888873 32222 22 5667865
Q ss_pred C----eeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 519 L----VSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 519 ~----V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
. |..+.|+|...+|++++.||+|++|
T Consensus 703 ~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 703 TNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ecccceEeecccCCCceEEecCCCceEEee
Confidence 5 8899999999999999999999998
No 114
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.5e-25 Score=225.49 Aligned_cols=275 Identities=19% Similarity=0.362 Sum_probs=216.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----eEEEEeccC---CccEEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEH---TQWITDVRFSP-SLSRLATSSADRTVRVWDTEN 336 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~----~~~~~l~~h---~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~ 336 (545)
...+|...++-..|+.++. ..+.||.+... ++...++.. ...+.+|.|.. +.++|||++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 3556777788888888875 47788876532 122222111 12355677865 567999999999999999986
Q ss_pred --CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCC-CCEEEEEECCC
Q 009059 337 --PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPR-LGRILAAAIEN 412 (545)
Q Consensus 337 --~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~-~~~l~~~~~dg 412 (545)
....+..|..|+..+.+++|++...++|++|+.||.|++||++..+...++... ..|..+.|+|. +.+|+++...|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 233366888999999999999999999999999999999999988877777654 35899999995 45677777789
Q ss_pred eEEEEECCCC-EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE
Q 009059 413 YISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 413 ~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~ 490 (545)
.|.+||++.. ++...+..|.++|.|+.|+|++.+||+|+ |+.|+|||..+... ..+.++. ...++.++.|-|...+
T Consensus 200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVKWRPARSY 277 (839)
T ss_pred eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeeeeccCccc
Confidence 9999999975 56778889999999999999999999999 99999999987543 3334443 3678999999999876
Q ss_pred EEEEEc---CCeEEEEeCCCCeEE--EeccCCCCeeEEEEeC-CCCEEEEEeCCCcEE
Q 009059 491 LLVIGC---YETLELWNMTENKTL--TLSAHDKLVSSLAAST-VNGMVASASHDKCVK 542 (545)
Q Consensus 491 l~~~~~---dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~sp-d~~~las~s~Dg~I~ 542 (545)
.++.+. |-.|+|||++..-+- ++..|...++.++|.. |...|.+++.||+|.
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 555443 449999999876544 7788999999999964 445888999999864
No 115
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=2.3e-24 Score=205.25 Aligned_cols=264 Identities=17% Similarity=0.206 Sum_probs=223.1
Q ss_pred CcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcC
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 315 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp 315 (545)
++.|+..-++|...+. .+.+|+||...|+.+.|+|+...+++++.|..|+||.............|..+|+.+..+|
T Consensus 237 GG~d~~av~~d~~s~q---~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~ 313 (506)
T KOG0289|consen 237 GGEDKTAVLFDKPSNQ---ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP 313 (506)
T ss_pred cCCCCceEEEecchhh---hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeecc
Confidence 4456666677665554 4678999999999999999999999999999999999988888888899999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeEecc--CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCC
Q 009059 316 SLSRLATSSADRTVRVWDTENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSG 392 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~--h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~ 392 (545)
.|.||++++.||+..+.|++++.. +..... ..-.+++++||||| .+|.+|..||.|++||+.....+..|.. .++
T Consensus 314 tgeYllsAs~d~~w~Fsd~~~g~~-lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~ 391 (506)
T KOG0289|consen 314 TGEYLLSASNDGTWAFSDISSGSQ-LTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGP 391 (506)
T ss_pred CCcEEEEecCCceEEEEEccCCcE-EEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCCc
Confidence 999999999999999999998875 333322 33459999999996 6788999999999999999888777764 456
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCC-CCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEE
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~ 470 (545)
|..+.|+.+|-++++++.|+.|++||++..+...++... ...+.+++|...|.+|+.++ |=.|++++-.+ +.+.++.
T Consensus 392 vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~~ 470 (506)
T KOG0289|consen 392 VKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEIK 470 (506)
T ss_pred eeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc-ccceeee
Confidence 999999999999999999999999999988877766543 34799999999999999986 44666666443 3457788
Q ss_pred EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 471 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
.+..|.+..+.+.|.....++++++.|..++++-+
T Consensus 471 ~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 471 ELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred hhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 88888889999999999999999999999888754
No 116
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=8.3e-25 Score=219.18 Aligned_cols=243 Identities=21% Similarity=0.351 Sum_probs=211.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCC
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp---~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
....|.|++.+|+|++||+|..-|+++||++...+....++.|...|.|+.|+. ..++||+++.|..|+|||+....
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 345699999999999999999999999999999999999999999999999986 36799999999999999999877
Q ss_pred eeeeEeccCcccEEEEEEeCCC-CcEEEEEcCCCcEEEEECCCCceeeEEe------ccCCeeEEEEeCCCCEEEEEECC
Q 009059 339 YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 339 ~~~~~~~~h~~~V~~l~~~p~~-~~ll~s~s~dg~I~lwd~~~~~~~~~~~------~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
..+.++.+|...|+++.|--.| +.-+++|+.|..|.+--.........+. ....+..++..|..+++++++.|
T Consensus 538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD 617 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQD 617 (1080)
T ss_pred chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecc
Confidence 7788999999999999998765 3345589989887653332211111111 22457899999999999999999
Q ss_pred CeEEEEECCCCEEEEEecC---CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCC
Q 009059 412 NYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 487 (545)
Q Consensus 412 g~I~i~d~~~~~~~~~~~~---h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~ 487 (545)
..|+|||+++++..+.|++ |.+....+...|.|.||++.. |.++.++|+.++ +|+..+.+|...|+.+.|.+|
T Consensus 618 rnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF~nD 694 (1080)
T KOG1408|consen 618 RNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKFLND 694 (1080)
T ss_pred cceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeeeccc
Confidence 9999999999999999986 667888899999999999988 999999999988 999999999999999999999
Q ss_pred CCEEEEEEcCCeEEEEeCCC
Q 009059 488 FPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 488 ~~~l~~~~~dg~I~iwd~~~ 507 (545)
.++|++++.||.|.||.+..
T Consensus 695 CkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 695 CKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chhheeecCCceEEEEECch
Confidence 99999999999999999864
No 117
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=1.3e-24 Score=208.85 Aligned_cols=253 Identities=19% Similarity=0.328 Sum_probs=204.5
Q ss_pred EEeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCC----------eEEEEeccCCccEEEEEEcCC-CCEEEEE
Q 009059 256 FQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF----------TVKSTLEEHTQWITDVRFSPS-LSRLATS 323 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spd-g~~latg~~dg~I~lwd~~~~----------~~~~~l~~h~~~V~~l~~sp~-~~~l~t~ 323 (545)
+...--|.+.|+.+.+-|. ...+|+++..+.|.|||.... .+-.++.+|...-+.|+|++. .-+|+++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence 3444569999999999994 556778888999999998642 222478899998889999984 4589999
Q ss_pred eCCCeEEEEECCCCCe------eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC--CceeeEEe-ccCCee
Q 009059 324 SADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCAGVFK-CQSGAT 394 (545)
Q Consensus 324 s~dg~I~vwd~~~~~~------~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~--~~~~~~~~-~~~~v~ 394 (545)
+.|++|++||+..... +...+.+|...|..++|++....+|++++.|+.+.|||+++ .++..... +...+.
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN 276 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence 9999999999975432 34578899999999999999999999999999999999994 44444443 467799
Q ss_pred EEEEeCCCCE-EEEEECCCeEEEEECCCC-EEEEEecCCCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCC------
Q 009059 395 QMRFQPRLGR-ILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGS------ 464 (545)
Q Consensus 395 ~l~~sp~~~~-l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~------ 464 (545)
|++|+|.+.. |++++.|++|.+||+++. .++.++.+|...|.++.|+|.. ..|++++ |+.+.|||+..-.
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 9999997665 455666999999999975 5788999999999999999976 4566666 9999999997532
Q ss_pred -----CcceEEEEeeCCCceEEEEEcCCCCEE-EEEEcCCeEEEEeCCCC
Q 009059 465 -----KGECIHELSCTGNKFHSCVFHPTFPSL-LVIGCYETLELWNMTEN 508 (545)
Q Consensus 465 -----~~~~i~~~~~~~~~v~~~~~sp~~~~l-~~~~~dg~I~iwd~~~~ 508 (545)
..+.+....+|...|..+.|+|+.+++ ++++.|+.+.||.+...
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 234566777899999999999999875 55667779999998643
No 118
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=3.6e-25 Score=202.40 Aligned_cols=289 Identities=13% Similarity=0.220 Sum_probs=224.1
Q ss_pred CceecccccCCccccccCCCCCCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 009059 214 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 293 (545)
Q Consensus 214 ~~~~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~ 293 (545)
..++++|+.|..++.+.-..--. ......+..-.+...--.+++|-.|.+.|+++.|+|....|++|+.|++|++||+.
T Consensus 124 G~lvATGsaD~SIKildvermla-ks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfs 202 (430)
T KOG0640|consen 124 GSLVATGSADASIKILDVERMLA-KSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFS 202 (430)
T ss_pred CcEEEccCCcceEEEeehhhhhh-hcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecc
Confidence 35778888887777663221000 00111111111222234688999999999999999999999999999999999987
Q ss_pred CCeEEEEec--cCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeee--EeccCcccEEEEEEeCCCCcEEEEEcC
Q 009059 294 SFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR--TFTGHSTTVMSLDFHPSKEDLLCSCDN 369 (545)
Q Consensus 294 ~~~~~~~l~--~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~--~~~~h~~~V~~l~~~p~~~~ll~s~s~ 369 (545)
.-...+.++ ....+|.++.|+|.|.+|+.|..-.++++||+++-++-+. .-..|++.|+++.+++.+. +.++++.
T Consensus 203 K~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSk 281 (430)
T KOG0640|consen 203 KTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASK 281 (430)
T ss_pred cHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCcc-EEEEecc
Confidence 543333322 3457899999999999999999999999999998664222 2346899999999999975 6669999
Q ss_pred CCcEEEEECCCCceeeEEec---cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCC-----CCEEEEEEc
Q 009059 370 NSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWN 441 (545)
Q Consensus 370 dg~I~lwd~~~~~~~~~~~~---~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-----~~I~~l~~s 441 (545)
||.|++||=-.++|+.++.. ...|.+..|..+++++++.+.|..+++|++.+++.+..+.+-. ..-+...|+
T Consensus 282 DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFN 361 (430)
T KOG0640|consen 282 DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFN 361 (430)
T ss_pred CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhc
Confidence 99999999999999988863 3458899999999999999999999999999999999887642 123445677
Q ss_pred CCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 442 TSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 442 p~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
....|++.-. .+.+.-||.++..... .--.+|.+.+..+.-+|.+.-+++++.|-.+++|--+
T Consensus 362 htEdyVl~pDEas~slcsWdaRtadr~~--l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 362 HTEDYVLFPDEASNSLCSWDARTADRVA--LLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CccceEEccccccCceeeccccchhhhh--hcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 8888888877 5689999999874322 2234789999999999999999999999999999643
No 119
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1e-24 Score=209.82 Aligned_cols=247 Identities=22% Similarity=0.265 Sum_probs=210.4
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEE
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 320 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l 320 (545)
.+.+|.+.+...+..... -.++|.|++-+|+|.||+.|+..|.|++|.+.+|.++..+..|-..|+|+.|+.|+.+|
T Consensus 62 ~l~vw~i~k~~~~~q~~v---~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~i 138 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQYIV---LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHI 138 (476)
T ss_pred cccccccCchhhhhhhcc---cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEE
Confidence 667787777655442222 24679999999999999999899999999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEEECCC--------CCeeeeEeccCcccEEEEEEeCCC-CcEEEEEcCCCcEEEEECCCCceeeEEeccC
Q 009059 321 ATSSADRTVRVWDTEN--------PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 391 (545)
Q Consensus 321 ~t~s~dg~I~vwd~~~--------~~~~~~~~~~h~~~V~~l~~~p~~-~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~ 391 (545)
+||+.||.|.+|.+.. .-.++..+..|+-+|+++...+.+ ...+++++.|.++++||+..+..+..+..+.
T Consensus 139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~ 218 (476)
T KOG0646|consen 139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS 218 (476)
T ss_pred EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC
Confidence 9999999999998642 123578899999999999987753 3466799999999999999999999999999
Q ss_pred CeeEEEEeCCCCEEEEEECCCeEEEEECCCC----------------EEEEEecCCCC--CEEEEEEcCCCCEEEEEe-C
Q 009059 392 GATQMRFQPRLGRILAAAIENYISILDVETQ----------------VCRLKLQGHKN--QVHSVCWNTSGEYLASVS-D 452 (545)
Q Consensus 392 ~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~----------------~~~~~~~~h~~--~I~~l~~sp~g~~l~s~s-d 452 (545)
.+.+++.+|.+..+++|+.+|.|.+.++... ..+..+.+|.+ .|+|++++-||.+|++|+ |
T Consensus 219 si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d 298 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED 298 (476)
T ss_pred cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC
Confidence 9999999999999999999999999887532 23556778888 999999999999999999 9
Q ss_pred CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 453 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 453 g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
|.|+|||+.+. .+++++....++|+.+.+.|-.+.++.
T Consensus 299 g~VcvWdi~S~---Q~iRtl~~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 299 GKVCVWDIYSK---QCIRTLQTSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred CCEEEEecchH---HHHHHHhhhccccceeEeeccccceec
Confidence 99999999877 677777667788999988665543443
No 120
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=1.9e-22 Score=195.50 Aligned_cols=294 Identities=15% Similarity=0.185 Sum_probs=228.7
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEE---eccC-CccEE
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKST---LEEH-TQWIT 309 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~~~~~~---l~~h-~~~V~ 309 (545)
..+.+....+|+|.++....++++ .+..|..+.|+| |.+++++++ .+.+.+|+.+.+.+... ++.+ ...|.
T Consensus 175 D~s~~h~lSVWdWqk~~~~~~vk~---sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl 250 (626)
T KOG2106|consen 175 DDSNPHMLSVWDWQKKAKLGPVKT---SNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVL 250 (626)
T ss_pred cCCCccccchhhchhhhccCccee---ccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEE
Confidence 345667889999999987766654 456799999999 455666665 68999999988766543 3333 36799
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee-----
Q 009059 310 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----- 384 (545)
Q Consensus 310 ~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~----- 384 (545)
|++|.++|. ++||..+|.|.||+...... .+....|.+.|.+++...+| .++ +|+.|..|..||-. -+.+
T Consensus 251 ~v~F~engd-viTgDS~G~i~Iw~~~~~~~-~k~~~aH~ggv~~L~~lr~G-tll-SGgKDRki~~Wd~~-y~k~r~~el 325 (626)
T KOG2106|consen 251 CVTFLENGD-VITGDSGGNILIWSKGTNRI-SKQVHAHDGGVFSLCMLRDG-TLL-SGGKDRKIILWDDN-YRKLRETEL 325 (626)
T ss_pred EEEEcCCCC-EEeecCCceEEEEeCCCceE-EeEeeecCCceEEEEEecCc-cEe-ecCccceEEecccc-ccccccccC
Confidence 999999876 78999999999999987665 44444999999999999886 455 79999999999832 1111
Q ss_pred -------eE------------------------------EeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEE
Q 009059 385 -------GV------------------------------FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 427 (545)
Q Consensus 385 -------~~------------------------------~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~ 427 (545)
++ +.+......++.+|..+.+++++.|+.+++|+ ..+.+.+
T Consensus 326 Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt 403 (626)
T KOG2106|consen 326 PEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT 403 (626)
T ss_pred chhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE
Confidence 00 11122345678889889999999999999999 4444444
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 428 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 428 ~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
.. -..++.|+.|+|.| .++.|. .|...+.|.++. ..+.... ...++.++.|+|+|.+|++|+.|+.|+||.+.
T Consensus 404 ~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 404 KI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ---DLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred EE-ecCceeEeeccCcc-eEEEeeccceEEEEecccc---eeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 43 46789999999999 888888 999999999874 3343333 38899999999999999999999999999886
Q ss_pred CCeEE--Eec-cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 507 ENKTL--TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 507 ~~~~~--~~~-~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+... ... -|..+|+.+.|++|+++|.+-+-|-.|..|+
T Consensus 478 ~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 478 ANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred CCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 65433 222 3448999999999999999999999999884
No 121
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.2e-23 Score=191.27 Aligned_cols=283 Identities=21% Similarity=0.340 Sum_probs=220.5
Q ss_pred eecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCe----------EEE-----EeccCCccEEEEEEcC-CCCEE
Q 009059 258 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT----------VKS-----TLEEHTQWITDVRFSP-SLSRL 320 (545)
Q Consensus 258 ~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~~----------~~~-----~l~~h~~~V~~l~~sp-~~~~l 320 (545)
..+.|.+.|+++.+.+ .|+|+++|+.||.|.|||++... .+. .-.+|...|..+.|-| |..+|
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3457999999999998 79999999999999999997532 111 1136888999999999 66789
Q ss_pred EEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCC--CCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEE
Q 009059 321 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 397 (545)
Q Consensus 321 ~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~--~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~ 397 (545)
.+++.|.+++|||..+-+. ...|. -.+.|++-+++|- ...|+++|..+-.|++.|+..|.+...+.. ..+|.++.
T Consensus 118 tssSFDhtlKVWDtnTlQ~-a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQE-AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeeccccee-eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 9999999999999998664 44454 4678998888884 356888999999999999999999998874 46799999
Q ss_pred EeCCCCEEE-EEECCCeEEEEECCCC-EEEEEe--------------cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEc
Q 009059 398 FQPRLGRIL-AAAIENYISILDVETQ-VCRLKL--------------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 460 (545)
Q Consensus 398 ~sp~~~~l~-~~~~dg~I~i~d~~~~-~~~~~~--------------~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~ 460 (545)
|+|...+++ +++.||.|++||++.. -+...+ ..|.+.|+.++|..++.++++++ |..+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 999877755 5667999999999864 333322 24677899999999999999988 999999999
Q ss_pred CCCCCcceEEEEeeCCC----ceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEE
Q 009059 461 GSGSKGECIHELSCTGN----KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 535 (545)
Q Consensus 461 ~~~~~~~~i~~~~~~~~----~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~ 535 (545)
.++.....-.....|.. .+. +. +-+...++..-.++.+.++++-++..+ .+..|-..|.+.++-|+-..+.++
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 88754221111111111 111 22 334444555556689999999888888 677898899999999999999999
Q ss_pred eCCCcEEEc
Q 009059 536 SHDKCVKIW 544 (545)
Q Consensus 536 s~Dg~I~iW 544 (545)
..|+.|..|
T Consensus 354 ~~d~ni~~w 362 (397)
T KOG4283|consen 354 DMNGNIYMW 362 (397)
T ss_pred ccCCccccc
Confidence 999999988
No 122
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=2.4e-24 Score=206.91 Aligned_cols=242 Identities=20% Similarity=0.322 Sum_probs=197.0
Q ss_pred ccCCccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCe---------eeeEeccCcccEEEEEEeCCCCcEEEEEcCCC
Q 009059 302 EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY---------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 371 (545)
Q Consensus 302 ~~h~~~V~~l~~sp~-~~~l~t~s~dg~I~vwd~~~~~~---------~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg 371 (545)
-.|.+.|+.+++-|. ..++++.+..+.|.|||...... +-..+.+|...-++++|++.....+++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 358999999999995 45677788899999999864321 12278899998999999998888888999999
Q ss_pred cEEEEECCCCce-------eeEEe-ccCCeeEEEEeCCC-CEEEEEECCCeEEEEECC--CCEEEEEecCCCCCEEEEEE
Q 009059 372 EIRYWSINNGSC-------AGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVE--TQVCRLKLQGHKNQVHSVCW 440 (545)
Q Consensus 372 ~I~lwd~~~~~~-------~~~~~-~~~~v~~l~~sp~~-~~l~~~~~dg~I~i~d~~--~~~~~~~~~~h~~~I~~l~~ 440 (545)
.|++||+..... ...+. +...|..++|++-. ..|.+++.|+.+.|||++ +.++.....+|.+.|+|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 999999975432 12233 34558899999954 456677789999999999 56667778889999999999
Q ss_pred cCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC-CEEEEEEcCCeEEEEeCCCC---------
Q 009059 441 NTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTEN--------- 508 (545)
Q Consensus 441 sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~--------- 508 (545)
+|-+ .+||+|+ |++|++||+++.. .+++.+.+|...|..+.|+|.. ..|++++.|+.+.|||+..-
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLN--KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcc--cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence 9965 5677788 9999999999765 5899999999999999999976 46777888999999999531
Q ss_pred -----eE-EEeccCCCCeeEEEEeCCCC-EEEEEeCCCcEEEcC
Q 009059 509 -----KT-LTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 545 (545)
Q Consensus 509 -----~~-~~~~~h~~~V~~l~~spd~~-~las~s~Dg~I~iWd 545 (545)
++ ..-.+|...|..+.|+|... .|++++.|+.+.||+
T Consensus 359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 11 24558999999999999887 677899999999996
No 123
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=1.4e-23 Score=210.48 Aligned_cols=284 Identities=21% Similarity=0.291 Sum_probs=226.2
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE----E---EeccCCccEEEEEEcCCCCEEEEEeCCCeEE
Q 009059 258 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----S---TLEEHTQWITDVRFSPSLSRLATSSADRTVR 330 (545)
Q Consensus 258 ~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~----~---~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~ 330 (545)
.+.||.+.|+++.|+|.+..|++++.|+++.+|...+..-+ . ...+.........|+|++..+++-+..|-.+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 45599999999999999999999999999999987653211 1 2233455688999999999999999999999
Q ss_pred EEECCCCCe--eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce-----eeEEeccCCeeEEEEeCCCC
Q 009059 331 VWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-----AGVFKCQSGATQMRFQPRLG 403 (545)
Q Consensus 331 vwd~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~-----~~~~~~~~~v~~l~~sp~~~ 403 (545)
+|...+... ......||.+.|..++|+|.|++++ +.+.|-+-|+|-.-..+. .+...|....+|++|-+..-
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEE-EeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 999443322 2345679999999999999998666 888899999987652211 11222445688999988657
Q ss_pred EEEEEECCCeEEEEECCC----------C---------------------------------E-----------------
Q 009059 404 RILAAAIENYISILDVET----------Q---------------------------------V----------------- 423 (545)
Q Consensus 404 ~l~~~~~dg~I~i~d~~~----------~---------------------------------~----------------- 423 (545)
.++.|+.+..+++|+... + .
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 788888888999986421 0 0
Q ss_pred ----------------EEEEecCCCCCEEEEEEcCCCCEEEEEe-CC-----cEEEEEcCCCCCcceEEEEeeCCCceEE
Q 009059 424 ----------------CRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNKFHS 481 (545)
Q Consensus 424 ----------------~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg-----~I~vwd~~~~~~~~~i~~~~~~~~~v~~ 481 (545)
.+.++.+|...|++++.+|+++++|+++ .. .|++|+..+- ..+..+..|.-.|+.
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---~~~~~L~~HsLTVT~ 577 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---LQVQELEGHSLTVTR 577 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---hhhheecccceEEEE
Confidence 0112347888999999999999999987 21 7999998765 556688899999999
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-----EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 482 CVFHPTFPSLLVIGCYETLELWNMTENKTL-----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 482 ~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-----~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++|+||+++|++++.|.++.+|........ ....|...|+++.|+|++.++||+|.|.+|+||.
T Consensus 578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 999999999999999999999988554433 3668999999999999999999999999999994
No 124
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.9e-23 Score=214.41 Aligned_cols=276 Identities=14% Similarity=0.227 Sum_probs=218.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-eEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 009059 260 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~-~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
.+|+..-+.|+|.|+|++|++++.||.|++|+...- +...++..+...|.+++.. +.+|++|+.+++|.+|.+.++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 378888999999999999999999999999997765 4445555588888888874 5599999999999999998876
Q ss_pred eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEE
Q 009059 339 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISIL 417 (545)
Q Consensus 339 ~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~ 417 (545)
. -..+...+-++.+++|+-+|+ +++.|+.|-.|++.++.+......++ +..+|.++.|+|+++.|++.+.||.|++|
T Consensus 88 ~-~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 88 E-DTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred c-cceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 4 344555667899999999875 55588889999999999887777665 56779999999999999999999999999
Q ss_pred ECCCCEEEEEecCC--------CCCEEEEEEcCCCC-EEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC
Q 009059 418 DVETQVCRLKLQGH--------KNQVHSVCWNTSGE-YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 488 (545)
Q Consensus 418 d~~~~~~~~~~~~h--------~~~I~~l~~sp~g~-~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~ 488 (545)
|+.++.+..++.+- ...+..++|+|+|. +++.+.|+.|++|+.........+ ..+.+...+..+.|+|+|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L-r~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL-RDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee-cccccccceEEEEEcCCC
Confidence 99998877766541 34567889999954 555555999999998876432222 222344559999999999
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 489 PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 489 ~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
.||++++.+|.|.|||.++... ......|.+++|.|+.+-|-.-..-|...+
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred cEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeecccccc
Confidence 9999999999999999998322 233467999999999886655555554443
No 125
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=5.7e-24 Score=206.48 Aligned_cols=265 Identities=14% Similarity=0.216 Sum_probs=203.0
Q ss_pred CcccceeeeeecCCc-eeeEEEEe-ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe------------
Q 009059 236 DPRDRVGRSAEVGKG-FTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL------------ 301 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~-~~~~~~~~-l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l------------ 301 (545)
++.|..+++||...- ..++.++. .......|.++.|++.|..|++.+....++|+|-...+.....
T Consensus 185 Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nT 264 (641)
T KOG0772|consen 185 GSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNT 264 (641)
T ss_pred ccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhcc
Confidence 445667777775431 11122222 2344557999999999999888888889999997655544332
Q ss_pred ccCCccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeeeEec-----cCcccEEEEEEeCCCCcEEEEEcCCCcEEE
Q 009059 302 EEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 375 (545)
Q Consensus 302 ~~h~~~V~~l~~sp~~-~~l~t~s~dg~I~vwd~~~~~~~~~~~~-----~h~~~V~~l~~~p~~~~ll~s~s~dg~I~l 375 (545)
++|...++|.+|+|.. ..|+|++.||++||||+.+.+..+..+. +..-+++.++|++++.. ||+|..||.|.+
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~ 343 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQI 343 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceee
Confidence 5799999999999964 5799999999999999987665444333 33457899999999865 668888999999
Q ss_pred EECCCCcee--eEEe--cc--CCeeEEEEeCCCCEEEEEECCCeEEEEECCCC-EEEEEecC--CCCCEEEEEEcCCCCE
Q 009059 376 WSINNGSCA--GVFK--CQ--SGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQG--HKNQVHSVCWNTSGEY 446 (545)
Q Consensus 376 wd~~~~~~~--~~~~--~~--~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~--h~~~I~~l~~sp~g~~ 446 (545)
|+....... ..++ |. ..|+++.|+++|++|++-+.|+.+++||++.. +++....+ ...+-+.++|+|+.++
T Consensus 344 W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kl 423 (641)
T KOG0772|consen 344 WDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKL 423 (641)
T ss_pred eecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceE
Confidence 998543222 1121 22 36999999999999999999999999999975 45554444 2345678999999999
Q ss_pred EEEEe-------CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 447 LASVS-------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 447 l~s~s-------dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
|++|. .+.+.+||..+. ..++.+......|..|.|+|.-+.|++++.||.++||-
T Consensus 424 i~TGtS~~~~~~~g~L~f~d~~t~---d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 424 ILTGTSAPNGMTAGTLFFFDRMTL---DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EEecccccCCCCCceEEEEeccce---eeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 99986 237999998776 67778877889999999999999999999999999874
No 126
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1.8e-22 Score=206.39 Aligned_cols=303 Identities=17% Similarity=0.261 Sum_probs=234.8
Q ss_pred ccceeeeeecCCc-ee-eEEEEeecCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEE
Q 009059 238 RDRVGRSAEVGKG-FT-FTEFQLIPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 313 (545)
Q Consensus 238 ~d~~~~~~~~~~~-~~-~~~~~~l~~H~~~V~~l~~spdg--~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~ 313 (545)
.+..+.+|+...+ .. ......++...+.|+++. +|.. +.++.|+.+|.+.||++++++.+.++.++...|+++.=
T Consensus 132 ~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieq 210 (910)
T KOG1539|consen 132 ISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQ 210 (910)
T ss_pred ccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEecc
Confidence 3456677776663 11 112333333334477764 5532 35788999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccC
Q 009059 314 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQS 391 (545)
Q Consensus 314 sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~ 391 (545)
+|--..++.|..+|+|.+++++.++. +..|+...+.|+.+.|.-||..+++++...|.+.+||++..+...... +.+
T Consensus 211 sPaLDVVaiG~~~G~ViifNlK~dki-l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~ 289 (910)
T KOG1539|consen 211 SPALDVVAIGLENGTVIIFNLKFDKI-LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYG 289 (910)
T ss_pred CCcceEEEEeccCceEEEEEcccCcE-EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccC
Confidence 99888999999999999999998775 778874459999999999999999999999999999999887766554 335
Q ss_pred CeeEEEEeCCCCEEEEEECCCeEEEE--ECCCC-----------------------------------------------
Q 009059 392 GATQMRFQPRLGRILAAAIENYISIL--DVETQ----------------------------------------------- 422 (545)
Q Consensus 392 ~v~~l~~sp~~~~l~~~~~dg~I~i~--d~~~~----------------------------------------------- 422 (545)
.+....|.+....+++++.|+.+++| |...+
T Consensus 290 sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~ 369 (910)
T KOG1539|consen 290 SVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQ 369 (910)
T ss_pred CcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHH
Confidence 56667777766666666666655444 31111
Q ss_pred ---------------------------------------------------------------EE-EEEec-----CCCC
Q 009059 423 ---------------------------------------------------------------VC-RLKLQ-----GHKN 433 (545)
Q Consensus 423 ---------------------------------------------------------------~~-~~~~~-----~h~~ 433 (545)
.. .+.+. ....
T Consensus 370 ~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~ 449 (910)
T KOG1539|consen 370 SQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDI 449 (910)
T ss_pred hHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCc
Confidence 00 00000 0114
Q ss_pred CEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEE---eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe
Q 009059 434 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~---~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 509 (545)
.+++++.++.|++.+.|. .|.|.+|++.++ .....+ ..|..+|+.++...-++.+++++.+|-+++||.++..
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG---i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSG---IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV 526 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccC---eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence 678889999999999998 889999999888 444445 5789999999999999999999999999999987654
Q ss_pred EE------------------------------------------EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 510 TL------------------------------------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 510 ~~------------------------------------------~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+ .+.+|.+.|++++|||||++|++++.|++|++||
T Consensus 527 l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 527 LKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred eeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 11 2457999999999999999999999999999998
No 127
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.5e-23 Score=188.24 Aligned_cols=257 Identities=19% Similarity=0.315 Sum_probs=198.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC----CCeEEEEeccCCccEEEEEEcC--CCCEEEEEeCCCeEEEEE
Q 009059 260 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 333 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~----~~~~~~~l~~h~~~V~~l~~sp--~~~~l~t~s~dg~I~vwd 333 (545)
.+|.+-|.|+.|.+.|+.+|+|+.|.+|+|||.. +..+....+.|.+.|..|.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4788999999999999999999999999999964 3456677789999999999965 489999999999999997
Q ss_pred CCCCC--------eeeeEeccCcccEEEEEEeCCC-CcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCE
Q 009059 334 TENPD--------YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 404 (545)
Q Consensus 334 ~~~~~--------~~~~~~~~h~~~V~~l~~~p~~-~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~ 404 (545)
-.... ....++......|+.+.|.|.. ...+++++.||.||||+.-.--.+........+..+.-
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~------ 163 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID------ 163 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC------
Confidence 63211 1234566778899999999863 34577899999999998764333332222111111100
Q ss_pred EEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCC---CCEEEEEeCC------cEEEEEcCCCC-CcceEEEEee
Q 009059 405 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS---GEYLASVSDE------LVRVWSIGSGS-KGECIHELSC 474 (545)
Q Consensus 405 l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~---g~~l~s~sdg------~I~vwd~~~~~-~~~~i~~~~~ 474 (545)
....+..+..|+.|+|. ..+|++|+|. .++||...... +...+.++..
T Consensus 164 ----------------------pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 164 ----------------------PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ----------------------CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 11235567788999874 4688888855 89999887654 5567778889
Q ss_pred CCCceEEEEEcCC----CCEEEEEEcCCeEEEEeCCCCe--------------------EE-EeccCCCCeeEEEEeCCC
Q 009059 475 TGNKFHSCVFHPT----FPSLLVIGCYETLELWNMTENK--------------------TL-TLSAHDKLVSSLAASTVN 529 (545)
Q Consensus 475 ~~~~v~~~~~sp~----~~~l~~~~~dg~I~iwd~~~~~--------------------~~-~~~~h~~~V~~l~~spd~ 529 (545)
|..+|+.++|.|+ ...|++++.|| |+||.+.... .+ .+..|.+.|+.+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 9999999999996 35688999999 9999987311 11 466899999999999999
Q ss_pred CEEEEEeCCCcEEEcC
Q 009059 530 GMVASASHDKCVKIWK 545 (545)
Q Consensus 530 ~~las~s~Dg~I~iWd 545 (545)
..|++.|.||+||+|+
T Consensus 301 tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEeecCCCceeeehh
Confidence 9999999999999996
No 128
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=7.7e-24 Score=210.50 Aligned_cols=276 Identities=22% Similarity=0.330 Sum_probs=209.3
Q ss_pred EEEEcC---CCCEEEEEeCCCcEEEEEcCCCeEE------EEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 009059 268 SCHFSP---DGKLLATGGHDKKAVLWCTESFTVK------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 268 ~l~~sp---dg~~latg~~dg~I~lwd~~~~~~~------~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
++.|++ ....||.+..||.|.++|....... .....|...|.++.|.|....|++++.|.++++||+....
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 366766 3457999999999999998754333 4456799999999999977899999999999999999876
Q ss_pred eeee--EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce--------------------eeEE-------e-
Q 009059 339 YSLR--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--------------------AGVF-------K- 388 (545)
Q Consensus 339 ~~~~--~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~--------------------~~~~-------~- 388 (545)
. .. .+.+|.+.|.+++|.|....+|++|+.||.|.|||++.... .... .
T Consensus 134 l-~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 134 L-VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred e-ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 4 43 48899999999999999999999999999999999874320 0000 0
Q ss_pred ccCCeeE---EEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEe--------cCC---CCCEEEEEEcCCCCEEEEEe-C
Q 009059 389 CQSGATQ---MRFQPRLGRILAAAI-ENYISILDVETQVCRLKL--------QGH---KNQVHSVCWNTSGEYLASVS-D 452 (545)
Q Consensus 389 ~~~~v~~---l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~--------~~h---~~~I~~l~~sp~g~~l~s~s-d 452 (545)
....+.. +.+..|...|++++. |+.|+|||++........ ..| .-.+.++..+..|.+|++.+ |
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 0111333 445556688888777 999999999976543322 223 23678888888888777666 9
Q ss_pred CcEEEEEcCCCCCcceEEEEeeCCCc--eEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE--EeccCCCCeeEEEEeCC
Q 009059 453 ELVRVWSIGSGSKGECIHELSCTGNK--FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTV 528 (545)
Q Consensus 453 g~I~vwd~~~~~~~~~i~~~~~~~~~--v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd 528 (545)
+.|++|++.+... ..+..+.++... ...-..+|++.++++|+.|...++|.+...+.- .+.+|.-.|++++|.|.
T Consensus 293 ~sIy~ynm~s~s~-sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 293 NSIYFYNMRSLSI-SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred CcEEEEeccccCc-CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence 9999999987543 333344433222 223357899999999999999999999887654 67799999999999875
Q ss_pred C-CEEEEEeCCCcEEEcC
Q 009059 529 N-GMVASASHDKCVKIWK 545 (545)
Q Consensus 529 ~-~~las~s~Dg~I~iWd 545 (545)
. .-+|++++|-+++||+
T Consensus 372 ~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 372 ATTPVATCSDDFRVKIWR 389 (720)
T ss_pred cCCCceeeccCcceEEEe
Confidence 4 3577779999999996
No 129
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.2e-23 Score=192.82 Aligned_cols=257 Identities=19% Similarity=0.298 Sum_probs=215.1
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEe
Q 009059 278 LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 357 (545)
Q Consensus 278 latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~ 357 (545)
|++.-.++++. .++++.+.+|.+.|+.++......++.+++.|.+.+||.++++.+ +..|.+|.+.|++|.|+
T Consensus 127 ivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C-L~~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 127 IVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC-LATYTGHTGSVNSIKFH 199 (481)
T ss_pred heeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccc-eeeecccccceeeEEec
Confidence 44444555532 356678899999999999988788999999999999999999875 99999999999999999
Q ss_pred CCCCcEEEEEcCCCcEEEEEC------CC--------Cc--------------------------eeeEEe-ccCCeeEE
Q 009059 358 PSKEDLLCSCDNNSEIRYWSI------NN--------GS--------------------------CAGVFK-CQSGATQM 396 (545)
Q Consensus 358 p~~~~ll~s~s~dg~I~lwd~------~~--------~~--------------------------~~~~~~-~~~~v~~l 396 (545)
+.+ .|+++++.|++-.||.. .. ++ ++..+. +...+.+.
T Consensus 200 ~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 200 NSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred ccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence 985 57779999999999961 11 00 111122 22346677
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC
Q 009059 397 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 475 (545)
Q Consensus 397 ~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~ 475 (545)
.|...+..+++++.|.+-.+||+++++.+..+.+|....+.++-+|..+++++.+ |-+.++||++. ....+..|.+|
T Consensus 279 dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGH 356 (481)
T KOG0300|consen 279 DWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGH 356 (481)
T ss_pred hhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh--hcceeeeeccc
Confidence 7888899999999999999999999999999999999999999999999999999 88999999983 34678889999
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 476 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 476 ~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
...|++..|..+.+ +++++.|.+|+|||+++.+.. .......+++.++.+..+.+||.--++..|++||
T Consensus 357 tdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 357 TDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred ccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence 99999999998887 899999999999999886544 4456778899999998888888888888899987
No 130
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3.2e-25 Score=223.05 Aligned_cols=238 Identities=26% Similarity=0.403 Sum_probs=214.6
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
.+.+..|...|.|+..-..++.+++|+.|..+-||.+.....+..+.+|..+|.+|.|++...+|++|+.+|+|++||++
T Consensus 21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 45567899999999997788999999999999999998888888899999999999999999999999999999999999
Q ss_pred CCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECCCeE
Q 009059 336 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYI 414 (545)
Q Consensus 336 ~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I 414 (545)
..+. ++++.+|...+..+.|+|-+.+ +++|+.|+.+++||++...|.+.+..+ ..+..+.|+|+|.+++.++.|..+
T Consensus 101 eAk~-vrtLtgh~~~~~sv~f~P~~~~-~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv 178 (825)
T KOG0267|consen 101 EAKI-VRTLTGHLLNITSVDFHPYGEF-FASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV 178 (825)
T ss_pred hhhh-hhhhhccccCcceeeeccceEE-eccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCccee
Confidence 8775 8999999999999999999754 479999999999999988888888754 347888999999999999999999
Q ss_pred EEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 415 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 415 ~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
+|||+..|+....|..|.+.+.++.|+|..-+++.|+ |++|++||+++. +.+.........|.+..|.|++..+++
T Consensus 179 ki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf---e~I~s~~~~~~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 179 KIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF---EVISSGKPETDGVRSLAFNPDGKIVLS 255 (825)
T ss_pred eeecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee---EEeeccCCccCCceeeeecCCceeeec
Confidence 9999999999999999999999999999999999999 999999999876 666666667888999999999997777
Q ss_pred EEcCC
Q 009059 494 IGCYE 498 (545)
Q Consensus 494 ~~~dg 498 (545)
|....
T Consensus 256 G~q~s 260 (825)
T KOG0267|consen 256 GEQIS 260 (825)
T ss_pred Cchhh
Confidence 65543
No 131
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=6.9e-24 Score=205.08 Aligned_cols=261 Identities=17% Similarity=0.304 Sum_probs=217.6
Q ss_pred ccceeeeeecCCceeeEEEEeecC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE--EEEeccCCccEEEEEE
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPA--STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRF 313 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~--H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~--~~~l~~h~~~V~~l~~ 313 (545)
..+-+++||+.....-..+..|.. ..+-|.+|.+.|||+.|++|+.-.++.|||+..-.+ ...+....-...+++.
T Consensus 438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~ 517 (705)
T KOG0639|consen 438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 517 (705)
T ss_pred CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhc
Confidence 345678999876533333333332 345699999999999999999999999999975433 3344444456788999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCe
Q 009059 314 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA 393 (545)
Q Consensus 314 sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v 393 (545)
+||.+..+++..||.|.|||+.+.. .++.|.+|.+.+.||.++++|..|. +|+-|.+||.||+++++.+........|
T Consensus 518 spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrqlqqhdF~SQI 595 (705)
T KOG0639|consen 518 SPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQHDFSSQI 595 (705)
T ss_pred CCccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhhhhhhhhhhhh
Confidence 9999999999999999999999765 4999999999999999999987665 9999999999999999988888888899
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEE
Q 009059 394 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 472 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~ 472 (545)
.++.+.|.+.++++|-..+.+.|......+ .+.+.-|...|.++.|.+-|+++++.+ |+.+..|....+ ..+...
T Consensus 596 fSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiFqs 671 (705)
T KOG0639|consen 596 FSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQS 671 (705)
T ss_pred eecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecCchhhhhhccCccc---cceeec
Confidence 999999999999999999999998876543 445666999999999999999999988 999999998777 444443
Q ss_pred eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 473 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 473 ~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
+ ....|.+|.++.+.++|++|+.|....||.+
T Consensus 672 k-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 672 K-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred c-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 3 3578999999999999999999988888765
No 132
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=5.6e-25 Score=221.28 Aligned_cols=253 Identities=21% Similarity=0.366 Sum_probs=222.3
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEE
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 354 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l 354 (545)
+.+++....+-.+++|+... +-.|...|.|+..-..++.+++|+.|..+-+|.+..... +..+.+|..+|.++
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~-i~S~~~hespIeSl 76 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA-ITSLTGHESPIESL 76 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCch-hheeeccCCcceee
Confidence 34555566667788888653 446888889988877888999999999999999987664 66789999999999
Q ss_pred EEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCC
Q 009059 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 433 (545)
Q Consensus 355 ~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~ 433 (545)
.|++. +.++++|+.+|+|++||++..+.++++.+ ...+..+.|+|-+.+++.++.|..+.+||.+..-+.+.+.+|..
T Consensus 77 ~f~~~-E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 77 TFDTS-ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred ecCcc-hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence 99998 57888999999999999999988887754 45689999999999998899999999999998889999999999
Q ss_pred CEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-
Q 009059 434 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL- 511 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~- 511 (545)
.|.++.|+|+|++++.++ |..++|||+..+ ..+.+|..|...+..+.|+|..-.++.|+.|+++++||+++.+.+
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence 999999999999999999 689999999887 778899999999999999999999999999999999999998888
Q ss_pred EeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 512 TLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 512 ~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
........|.+++|+|++..+++|..+
T Consensus 233 s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 233 SGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccCCccCCceeeeecCCceeeecCchh
Confidence 555567889999999999998888654
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2e-22 Score=208.30 Aligned_cols=238 Identities=17% Similarity=0.257 Sum_probs=200.5
Q ss_pred ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC
Q 009059 302 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 381 (545)
Q Consensus 302 ~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~ 381 (545)
..|....+.|+|.|+|..|++++.||.|++|+.........++..+...|.+++.... .|++|+.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCC
Confidence 4688889999999999999999999999999987663334444447888998887643 5669999999999999887
Q ss_pred ceeeE-EeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEE
Q 009059 382 SCAGV-FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 459 (545)
Q Consensus 382 ~~~~~-~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd 459 (545)
+.-.. .+..-++.+++|+.+|.++++|+.|-.|++.++.+......+.+|.++|.++.|+|++.+||+.+ ||.|+|||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 65422 23346799999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred cCCCCCcceEEEEee-------C-CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Eec--cCCCCeeEEEEeCC
Q 009059 460 IGSGSKGECIHELSC-------T-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS--AHDKLVSSLAASTV 528 (545)
Q Consensus 460 ~~~~~~~~~i~~~~~-------~-~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~--~h~~~V~~l~~spd 528 (545)
+.++. +..++.. . ...+..++|+|++..+++.+.|+.|++|+..+++.. .+. .+...+..+.|+|.
T Consensus 167 ~~~~~---~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn 243 (933)
T KOG1274|consen 167 LQDGI---LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN 243 (933)
T ss_pred cccch---hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence 98873 3322221 1 344677899999999999999999999999998877 333 45555999999999
Q ss_pred CCEEEEEeCCCcEEEcC
Q 009059 529 NGMVASASHDKCVKIWK 545 (545)
Q Consensus 529 ~~~las~s~Dg~I~iWd 545 (545)
|+|||+++.||.|.|||
T Consensus 244 G~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 244 GKYIAASTLDGQILVWN 260 (933)
T ss_pred CcEEeeeccCCcEEEEe
Confidence 99999999999999997
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.5e-22 Score=184.31 Aligned_cols=234 Identities=18% Similarity=0.271 Sum_probs=190.2
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce
Q 009059 304 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 304 h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~ 383 (545)
..+.|..|.|+|.+..|+++++||++++||+.... ++....|..++.+++|.++ .-+++|+.||.|+.+|+.++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--LKLKFKHGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh--hhhheecCCceeeeeccCC--ceEEEeccCceEEEEEecCCcc
Confidence 36789999999999999999999999999998764 3444458999999999975 3455999999999999999998
Q ss_pred eeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCC
Q 009059 384 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 462 (545)
Q Consensus 384 ~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~ 462 (545)
...-.+..++.++.+.+..+.+++|+.|+.|++||.+.......+.. ...|.++.. .|..|++|. |..|.+||+++
T Consensus 88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEccc
Confidence 88888999999999999999999999999999999998666655553 447888776 466677766 99999999998
Q ss_pred CCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC-----eEEEeccCC---------CCeeEEEEeCC
Q 009059 463 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-----KTLTLSAHD---------KLVSSLAASTV 528 (545)
Q Consensus 463 ~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~-----~~~~~~~h~---------~~V~~l~~spd 528 (545)
...... ..-......++++++-|++.-+++++-+|.|.+=.++.. +...+..|. -+|++|+|+|-
T Consensus 165 ~~~~~q-~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 165 LDEPFQ-RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred ccchhh-hccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 654321 122234567899999998888999999997776555443 222555554 36999999999
Q ss_pred CCEEEEEeCCCcEEEcC
Q 009059 529 NGMVASASHDKCVKIWK 545 (545)
Q Consensus 529 ~~~las~s~Dg~I~iWd 545 (545)
.+.||||+.||.|.+||
T Consensus 244 ~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWD 260 (323)
T ss_pred cceEEecCCCceEEEcc
Confidence 99999999999999997
No 135
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2e-21 Score=194.93 Aligned_cols=278 Identities=17% Similarity=0.229 Sum_probs=226.5
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-EEEEeccC-CccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 257 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~-~~~~l~~h-~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
+.+.--...|+|+||+.+.+.||.+-.||.|.||++...- +...+.++ ...|.+++|+ ++..|++.+.+|.|.-||+
T Consensus 19 rf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 19 RFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred EEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEec
Confidence 3444456789999999999999999999999999998643 33455555 4679999999 4567888889999999999
Q ss_pred CCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec---cCCeeEEEEeCCCCEEEEEECC
Q 009059 335 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 335 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~---~~~v~~l~~sp~~~~l~~~~~d 411 (545)
.+.+. ...+....+.|++++.+|.+. .++.|+.||.++.+++..++....... .+.+.++.|++++..++.|+.|
T Consensus 98 ~~lk~-~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 98 HTLKQ-KYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred ccCce-eEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence 98775 777777889999999999975 455777899999999888877654432 3679999999999999999999
Q ss_pred CeEEEEECCCCEEEEEec----C----CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEE
Q 009059 412 NYISILDVETQVCRLKLQ----G----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 482 (545)
Q Consensus 412 g~I~i~d~~~~~~~~~~~----~----h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~ 482 (545)
|.|++||+..+..++... + ...-|+++.|..++. |++|. .|+|.+||...+ ..+..+..|...|.++
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~g---TLiqS~~~h~adVl~L 251 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFG---TLIQSHSCHDADVLAL 251 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCc---chhhhhhhhhcceeEE
Confidence 999999999987666211 1 223467777776654 55555 999999999887 7788888999999999
Q ss_pred EEcCCCCEEEEEEcCCeEEEEeCCCCeE--E---EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 483 VFHPTFPSLLVIGCYETLELWNMTENKT--L---TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 483 ~~sp~~~~l~~~~~dg~I~iwd~~~~~~--~---~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
+..+++.++++++.|+.|..|...+++. + ....|...|.+++..++ .|++|+.|..+.+
T Consensus 252 av~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 252 AVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred EEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 9999999999999999998888877643 1 45578999999999866 8999999998765
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2e-22 Score=194.16 Aligned_cols=258 Identities=14% Similarity=0.188 Sum_probs=204.2
Q ss_pred EeCC-CcEEEEEcCCCeEEEEeccC-CccEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeeeEeccCcccEEEEEEe
Q 009059 281 GGHD-KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 357 (545)
Q Consensus 281 g~~d-g~I~lwd~~~~~~~~~l~~h-~~~V~~l~~sp~~~~l~t~s~-dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~ 357 (545)
++.| .++.+||+.+|.....+++. ...-..+..- ++.+++++.. ...|.+|.+..... ...+.-..++|.+++-+
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~-~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQ-VVQYIVLPGPVHALASS 90 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhh-hhhhcccccceeeeecC
Confidence 3444 45999999999999888765 2222222221 2356666654 45799999986554 33344467889999999
Q ss_pred CCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECC---------CCEEEEE
Q 009059 358 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVE---------TQVCRLK 427 (545)
Q Consensus 358 p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~---------~~~~~~~ 427 (545)
|+|.+++ .|...|.|++|.+.+|..+..+. |-..|+++.|+.++.+|++++.||.|.+|++- +-++++.
T Consensus 91 n~G~~l~-ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 91 NLGYFLL-AGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred CCceEEE-eecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 9975444 66688999999999999988775 44569999999999999999999999999863 3467888
Q ss_pred ecCCCCCEEEEEEcCCC--CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 428 LQGHKNQVHSVCWNTSG--EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 428 ~~~h~~~I~~l~~sp~g--~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
+..|.-+|+.+...+.| .+|++++ |.++++||+..+ ..+.++. ....+.+++.+|-++.+++|+.+|.|.+.+
T Consensus 170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeee
Confidence 99999999999887653 5788888 999999999888 4454443 467899999999999999999999999887
Q ss_pred CCCCe-----------------EEEeccCCC--CeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 505 MTENK-----------------TLTLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 505 ~~~~~-----------------~~~~~~h~~--~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+.... ...+.+|.+ .|+|++++-||.+|++|+.||.|+|||
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 74432 115668888 999999999999999999999999997
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.3e-20 Score=189.10 Aligned_cols=220 Identities=13% Similarity=0.199 Sum_probs=178.3
Q ss_pred cceeeeeecCCceeeEEEEeecC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~-H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
+..+.+|+...+.... ..+.+ -.+.|.+++|++. ..|++.+.+|.|.-||+.+++.+..+....+.|++++.+|.+
T Consensus 46 ~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~ 122 (691)
T KOG2048|consen 46 DGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN 122 (691)
T ss_pred CCcEEEEccCCCceee--EEEecCCCCceeeEEEccC-CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCcc
Confidence 4566777777654433 33444 4568999999954 477788889999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeee-EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-----ccC
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----CQS 391 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-----~~~ 391 (545)
..++.|+.||.+..++...+..... .+...++.|.++.|+|++..++ +|+.||.|++||...+..+.... ...
T Consensus 123 ~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~-~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k 201 (691)
T KOG2048|consen 123 TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA-GGSIDGVIRIWDVKSGQTLHIITMQLDRLSK 201 (691)
T ss_pred ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE-ecccCceEEEEEcCCCceEEEeeeccccccc
Confidence 9999999999888888876654333 3445568999999999975555 99999999999999988777332 112
Q ss_pred ----CeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q 009059 392 ----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 463 (545)
Q Consensus 392 ----~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~ 463 (545)
-|.++.|..+ +.|++|.+-|.|.+||...+..+..+..|.+.|.+++..+++.++++++ |+.|.-|...+.
T Consensus 202 ~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 202 REPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred CCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 1567777755 8899999999999999999999999999999999999999988888888 997777765443
No 138
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=5.5e-22 Score=190.49 Aligned_cols=291 Identities=17% Similarity=0.263 Sum_probs=212.6
Q ss_pred eeEEEEeecCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCC----CeEEEEeccCCccEEEEEEcC-CCCEEEEEe
Q 009059 252 TFTEFQLIPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSP-SLSRLATSS 324 (545)
Q Consensus 252 ~~~~~~~l~~H~~~V~~l~~spdg--~~latg~~dg~I~lwd~~~----~~~~~~l~~h~~~V~~l~~sp-~~~~l~t~s 324 (545)
.+.....++-|.++|++++|+|.. +++|+|..-|.|-+||+.+ ..-+..+..|..+|.+|.|+| +...+++.+
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec
Confidence 344566778899999999999943 5889999999999999952 223456778999999999999 456899999
Q ss_pred CCCeEEEEECCCCCee-eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce-eeEEe-ccCCeeEEEEeCC
Q 009059 325 ADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQPR 401 (545)
Q Consensus 325 ~dg~I~vwd~~~~~~~-~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~-~~~~~-~~~~v~~l~~sp~ 401 (545)
.||+|++-|++..... +.........+..+.|+.+...++ .++.=|...+||+++... ...+. +...|..++++|.
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV 333 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence 9999999999865431 222323445677888888766666 555566999999997654 33232 3457999999997
Q ss_pred CCE-EEEEECCCeEEEEECCCCE----EEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC-CCcceEEEEee
Q 009059 402 LGR-ILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-SKGECIHELSC 474 (545)
Q Consensus 402 ~~~-l~~~~~dg~I~i~d~~~~~----~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~-~~~~~i~~~~~ 474 (545)
..+ +++++.|++++|||++.-. ++.....|...|.+..|+|.+-.|++.+ |..|+|||..-. .......++.
T Consensus 334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~- 412 (498)
T KOG4328|consen 334 CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP- 412 (498)
T ss_pred CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-
Confidence 555 6677789999999998632 2344456999999999999876677776 999999998411 1112222222
Q ss_pred CC----C--ceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccC-CCCeeE-EEEeCCCC-EEEEEeCCCcEEEc
Q 009059 475 TG----N--KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSS-LAASTVNG-MVASASHDKCVKIW 544 (545)
Q Consensus 475 ~~----~--~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h-~~~V~~-l~~spd~~-~las~s~Dg~I~iW 544 (545)
|. . ......|.|+..+|+++-.-..|.|||-+.++.+ .+..- ...|.+ ..|+|-+. +++-++..|.|+||
T Consensus 413 Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 413 HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 22 1 2345689999999999999999999999998866 43322 224444 47999888 44455567888888
No 139
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=5e-22 Score=180.76 Aligned_cols=209 Identities=20% Similarity=0.327 Sum_probs=174.2
Q ss_pred ccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCe-----------e---eeEeccCcccEEEEEEeCCCCcEEEE
Q 009059 302 EEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY-----------S---LRTFTGHSTTVMSLDFHPSKEDLLCS 366 (545)
Q Consensus 302 ~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~~-----------~---~~~~~~h~~~V~~l~~~p~~~~ll~s 366 (545)
..|.+.|+.+...+ .|+|+++|+.||.|.|||+++... + ...-.+|.-.|..+.|.|-..-++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35778899999977 689999999999999999985430 0 11234688899999999988889999
Q ss_pred EcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCC---CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCC
Q 009059 367 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 443 (545)
Q Consensus 367 ~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~---~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~ 443 (545)
++.|.++++||..+.+....|+.++.|..-+++|-. -.+++|..+-.|++.|+.+|..-+.+.+|...|.++.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 999999999999999999999999999999998842 34666677889999999999999999999999999999998
Q ss_pred CCEE-EEEe-CCcEEEEEcCCCC------------CcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe
Q 009059 444 GEYL-ASVS-DELVRVWSIGSGS------------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 444 g~~l-~s~s-dg~I~vwd~~~~~------------~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 509 (545)
..++ ++|+ ||.|++||++... ....+..-..|.+.|..++|..++.++++++.|..+++|+...++
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 8765 5566 9999999998642 111222234567889999999999999999999999999998765
Q ss_pred E
Q 009059 510 T 510 (545)
Q Consensus 510 ~ 510 (545)
.
T Consensus 280 n 280 (397)
T KOG4283|consen 280 N 280 (397)
T ss_pred c
Confidence 3
No 140
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=5.1e-22 Score=186.42 Aligned_cols=244 Identities=18% Similarity=0.366 Sum_probs=189.3
Q ss_pred ecCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcC----------------CCeEEEEeccCCccEEEEEEcC-CCCE
Q 009059 259 IPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTE----------------SFTVKSTLEEHTQWITDVRFSP-SLSR 319 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg--~~latg~~dg~I~lwd~~----------------~~~~~~~l~~h~~~V~~l~~sp-~~~~ 319 (545)
..+|.+.|+.+..++-+ .+.|+-+..|.|.||++. ..+++.++.+|...=+.|+|+| ....
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34678888888877754 456666778999999974 2466788899999999999999 3346
Q ss_pred EEEEeCCCeEEEEECCCCCeee--eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC---ceeeEEeccCCee
Q 009059 320 LATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKCQSGAT 394 (545)
Q Consensus 320 l~t~s~dg~I~vwd~~~~~~~~--~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~---~~~~~~~~~~~v~ 394 (545)
|++|..-+.|++|...++...+ ..+.+|+..|-.++|+|....+|++|+.||+|+|||++.+ .++.+-.+.+.|+
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence 8899888999999998876533 4677899999999999999999999999999999999988 5666666778899
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCC---CEEEEEecCCCCCEEEEEEcCCCC-EEEE-EeCCcEEEEEcCCCCCcc--
Q 009059 395 QMRFQPRLGRILAAAIENYISILDVET---QVCRLKLQGHKNQVHSVCWNTSGE-YLAS-VSDELVRVWSIGSGSKGE-- 467 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~~dg~I~i~d~~~---~~~~~~~~~h~~~I~~l~~sp~g~-~l~s-~sdg~I~vwd~~~~~~~~-- 467 (545)
.+.|+.+...|++|+.||+++|||++. +.++..++-|..+|++|.|+|... .|++ |.|..|.+||+......+
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 999999988899999999999999985 577889999999999999999643 3444 449999999986542211
Q ss_pred -------------eEEEEeeCCCceEEEEEcCCCCE-EEEEEcCCeEEEE
Q 009059 468 -------------CIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELW 503 (545)
Q Consensus 468 -------------~i~~~~~~~~~v~~~~~sp~~~~-l~~~~~dg~I~iw 503 (545)
.+..+......+..+.|++.-+- |++.+.|| +.||
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 01111112345677888887654 44455555 4444
No 141
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=5.9e-22 Score=198.89 Aligned_cols=305 Identities=17% Similarity=0.245 Sum_probs=230.8
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCe-------------------
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK---LLATGGHDKKAVLWCTESFT------------------- 296 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~---~latg~~dg~I~lwd~~~~~------------------- 296 (545)
+..+.++.-. ...|..+..+.||.+.|.+++|..-+. +||+++.|..|+||.+.-+.
T Consensus 168 ~~~v~~~s~~-~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~ 246 (764)
T KOG1063|consen 168 KFVVDLYSSS-ADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPV 246 (764)
T ss_pred ceEEEEeccC-CcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCce
Confidence 3444555444 337888999999999999999988544 89999999999999763211
Q ss_pred --EE----------EEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee------eeEeccCcccEEEEEEeC
Q 009059 297 --VK----------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS------LRTFTGHSTTVMSLDFHP 358 (545)
Q Consensus 297 --~~----------~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~------~~~~~~h~~~V~~l~~~p 358 (545)
.. ..+.+|++.|+++.|+|.+..|++++.|.++.+|...+..-. +-...+.....+...|+|
T Consensus 247 f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~ 326 (764)
T KOG1063|consen 247 FMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP 326 (764)
T ss_pred eeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC
Confidence 01 112489999999999999999999999999999988765321 112234456688999999
Q ss_pred CCCcEEEEEcCCCcEEEEECCC-Cceee--EE-eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC----CEEEEEecC
Q 009059 359 SKEDLLCSCDNNSEIRYWSINN-GSCAG--VF-KCQSGATQMRFQPRLGRILAAAIENYISILDVET----QVCRLKLQG 430 (545)
Q Consensus 359 ~~~~ll~s~s~dg~I~lwd~~~-~~~~~--~~-~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~----~~~~~~~~~ 430 (545)
++..++ +-+..|..++|.... ..... .+ .+-..|..+.|.|.|.+|++++.|-+-++|-.-. ...+..-+-
T Consensus 327 n~~~ii-~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQi 405 (764)
T KOG1063|consen 327 NSNVII-AHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQI 405 (764)
T ss_pred CCCEEE-EecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccc
Confidence 985555 667788999998332 22221 12 2446799999999999999999999999986641 233444456
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC-------------------------------------------CC-
Q 009059 431 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-------------------------------------------SK- 465 (545)
Q Consensus 431 h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~-------------------------------------------~~- 465 (545)
|...++|++|-+....+++|. +..+|+|+.... ..
T Consensus 406 HGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~ 485 (764)
T KOG1063|consen 406 HGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEA 485 (764)
T ss_pred ccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccc
Confidence 888999999988655666666 668999975310 00
Q ss_pred -----------------------------cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC-----eEEEEeCCCCeEE
Q 009059 466 -----------------------------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTL 511 (545)
Q Consensus 466 -----------------------------~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-----~I~iwd~~~~~~~ 511 (545)
...++.+-+|+..|++++.+|+++++++++... .|++|+..+....
T Consensus 486 ~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~ 565 (764)
T KOG1063|consen 486 AVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV 565 (764)
T ss_pred ceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh
Confidence 000112446889999999999999999887654 7999999988777
Q ss_pred -EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 512 -TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 512 -~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+.+|.-.|+.|+||||+++|++++.|.++.+|+
T Consensus 566 ~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 566 QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred heecccceEEEEEEECCCCcEEEEeecCceEEeee
Confidence 6899999999999999999999999999999984
No 142
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=8.8e-22 Score=181.86 Aligned_cols=285 Identities=19% Similarity=0.335 Sum_probs=220.0
Q ss_pred EeecCCCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEEcCCC---eEEEEe--ccCCccEEEEEEcCC----CCEEEE
Q 009059 257 QLIPASTSKVESCHFSP-----DGKLLATGGHDKKAVLWCTESF---TVKSTL--EEHTQWITDVRFSPS----LSRLAT 322 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~sp-----dg~~latg~~dg~I~lwd~~~~---~~~~~l--~~h~~~V~~l~~sp~----~~~l~t 322 (545)
+....|+.+|..++|.+ +...+|++|. ..+.+|..... ..+..+ ..|......++|+-+ ..+||.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34567899999999985 3346777764 58889987543 233333 247788888999764 458999
Q ss_pred EeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe----ccCCeeEEEE
Q 009059 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRF 398 (545)
Q Consensus 323 ~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~----~~~~v~~l~~ 398 (545)
++.-|.|+|.|+.++.. ...+.+|...|+.|.++|+...|+++++.|..|++|++++..|+..+. |...|.++.|
T Consensus 111 ~G~~GvIrVid~~~~~~-~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQC-SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ecceeEEEEEecchhhh-ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 99999999999998775 888999999999999999999999999999999999999999999885 4556999999
Q ss_pred eCCCCEEEEEECCCeEEEEECCCCEEEE----------------------------EecCCCCCEEEEEEcCCCCEEEEE
Q 009059 399 QPRLGRILAAAIENYISILDVETQVCRL----------------------------KLQGHKNQVHSVCWNTSGEYLASV 450 (545)
Q Consensus 399 sp~~~~l~~~~~dg~I~i~d~~~~~~~~----------------------------~~~~h~~~I~~l~~sp~g~~l~s~ 450 (545)
+.++.++++++.|..|++|++...+... +-.-|...|-|+.|- |.++++-
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence 9999999999999999999998432110 112255566666664 5788887
Q ss_pred e-CCcEEEEEcCC-C----------CCcceEEEEeeCCCceEEE--EEcCCCCEEEEEEcCCeEEEEeCCCCeEE---Ee
Q 009059 451 S-DELVRVWSIGS-G----------SKGECIHELSCTGNKFHSC--VFHPTFPSLLVIGCYETLELWNMTENKTL---TL 513 (545)
Q Consensus 451 s-dg~I~vwd~~~-~----------~~~~~i~~~~~~~~~v~~~--~~sp~~~~l~~~~~dg~I~iwd~~~~~~~---~~ 513 (545)
+ ++.|..|.... . .....+.++......++-+ +|.+-.+.|+.|...|.|++||++..+.. ++
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 7 99999998721 1 1112333444444445444 56777899999999999999999887763 22
Q ss_pred c--cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 514 S--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 514 ~--~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
. .....|...+|+.|+.+|+..++|++|.-||
T Consensus 348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred EeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 2 2346789999999999999999999999886
No 143
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=1.2e-21 Score=195.24 Aligned_cols=270 Identities=19% Similarity=0.302 Sum_probs=213.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEe
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 344 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~ 344 (545)
.|..++|-|||..|+.+. +..+.|||...|..+.++++|.+.|+|++|+.||+++++|+.|+.|.+|.-.-.. +..+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--ILKY 90 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc--eeee
Confidence 799999999999888875 5689999999999999999999999999999999999999999999999876433 2333
Q ss_pred ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE
Q 009059 345 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 424 (545)
Q Consensus 345 ~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~ 424 (545)
.|.+.|.|+.|+|-.. .+++|+- ...-+|...... +...+....+.+++|..+|.+++.|-.+|+|.+-+......
T Consensus 91 -SH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 91 -SHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred -ccCCeeeEeecCchHH-Hhhhcch-hhccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 4899999999999854 5558774 346788876433 33344446788999999999999999999999986544332
Q ss_pred EE--EecCCCCCEEEEEEcCCC-----CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc
Q 009059 425 RL--KLQGHKNQVHSVCWNTSG-----EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 496 (545)
Q Consensus 425 ~~--~~~~h~~~I~~l~~sp~g-----~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~ 496 (545)
+. .-.+...+|.+++|+|.. ..+++.. ..++.+|.+.. ..+..-...+-...|+.+.++|.+++.|++
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGGs 242 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGGS 242 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEccC
Confidence 22 223467899999999963 4666666 66777777653 223322333445678899999999999999
Q ss_pred CCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 497 YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 497 dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|+.+.+|-.+.-..-++...+..|+.++..|++.+++.|+.||+|-.|+
T Consensus 243 dk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 243 DKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 9999999765544447767888999999999999999999999997663
No 144
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=6.2e-22 Score=190.30 Aligned_cols=265 Identities=15% Similarity=0.196 Sum_probs=211.2
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEE--EEeccCC-ccEEEEEE
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK--STLEEHT-QWITDVRF 313 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~-~latg~~dg~I~lwd~~~~~~~--~~l~~h~-~~V~~l~~ 313 (545)
.|+.++++.++. ..-..++.+.-..-+|.+++|.|+|. .+++++....++.||+++.+.. ..+.++. ..+.....
T Consensus 233 ~d~~lrifqvDG-k~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeV 311 (514)
T KOG2055|consen 233 LDGTLRIFQVDG-KVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEV 311 (514)
T ss_pred CCCcEEEEEecC-ccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEe
Confidence 355566665542 23335666777788999999999999 8999999999999999987654 3334444 35677788
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCe
Q 009059 314 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA 393 (545)
Q Consensus 314 sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v 393 (545)
++++++|+..+..|.|.+....++.. +..++ -.+.|..++|+.+++.++++| .+|.|++||++...+++.+...+.+
T Consensus 312 Shd~~fia~~G~~G~I~lLhakT~el-i~s~K-ieG~v~~~~fsSdsk~l~~~~-~~GeV~v~nl~~~~~~~rf~D~G~v 388 (514)
T KOG2055|consen 312 SHDSNFIAIAGNNGHIHLLHAKTKEL-ITSFK-IEGVVSDFTFSSDSKELLASG-GTGEVYVWNLRQNSCLHRFVDDGSV 388 (514)
T ss_pred cCCCCeEEEcccCceEEeehhhhhhh-hheee-eccEEeeEEEecCCcEEEEEc-CCceEEEEecCCcceEEEEeecCcc
Confidence 99999999999999999999988765 55555 567899999999987777554 5889999999999999999877765
Q ss_pred --eEEEEeCCCCEEEEEECCCeEEEEECCC------CEEEEEecCCCCCEEEEEEcCCCCEEEEEe---CCcEEEEEcCC
Q 009059 394 --TQMRFQPRLGRILAAAIENYISILDVET------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGS 462 (545)
Q Consensus 394 --~~l~~sp~~~~l~~~~~dg~I~i~d~~~------~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s---dg~I~vwd~~~ 462 (545)
+.++.++++.++++|+..|.|.|||.++ .+++..+..-...|+++.|+++..+||.++ ++.+++-.+.+
T Consensus 389 ~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 389 HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 5677789999999999999999999764 456666766778999999999999999988 56899998876
Q ss_pred CCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 463 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 463 ~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
.....-.-.....-+.|+|++|+|.+.+|++|...|.+.+|.+.
T Consensus 469 ~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 469 CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 52211111222334668999999999999999999999999874
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.1e-21 Score=189.75 Aligned_cols=282 Identities=18% Similarity=0.218 Sum_probs=211.6
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCC--eEEEEeccCCccEEEEEEcCCC
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~-latg~~dg~I~lwd~~~~--~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.+++||...-....++....... .|.+++|.....+ +|+.+.|+.|++|.-... +....-+.....-.|++.....
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~~p-g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S 91 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTAEP-GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS 91 (673)
T ss_pred ceEEeecccccCccccccCCCCC-cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcc
Confidence 45677766544333333222222 3899999986532 334457889999974322 1221111122244555555556
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC--eeE
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQ 395 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~--v~~ 395 (545)
.|+++|+..+.|+|||++. +.+.+.+++|...|+++.++... .++|+++..|.|.+..+.++.....|.+..+ +.-
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~-kl~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRA-KLIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL 169 (673)
T ss_pred eeeeccCcCceeeehhhHH-HHHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence 8999999999999999994 55688999999999999999875 4666999999999999999988888887633 668
Q ss_pred EEEeCCCCEEE-EEECCCeEEEEECCCCEEEEEe-cCCCCCEEEEEEcCCCC-EEEEEe-CCcEEEEEcCCCCCcceEEE
Q 009059 396 MRFQPRLGRIL-AAAIENYISILDVETQVCRLKL-QGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 396 l~~sp~~~~l~-~~~~dg~I~i~d~~~~~~~~~~-~~h~~~I~~l~~sp~g~-~l~s~s-dg~I~vwd~~~~~~~~~i~~ 471 (545)
+.|++....++ +++.+|.|.+||+....+++.+ +.|..+...|||+|... +|++.+ |..|.+||++......++
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l-- 247 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL-- 247 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee--
Confidence 99999866655 5667899999999988777654 45999999999999764 555666 999999999875332222
Q ss_pred EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE--EeccCCCCeeEEEEeCCC
Q 009059 472 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVN 529 (545)
Q Consensus 472 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd~ 529 (545)
....+...++|.++|.+|++|...|.|+.||++..+.- .+.+|...|++++|-|..
T Consensus 248 --~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 248 --TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred --eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 24678899999999999999999999999999876543 777999999999998764
No 146
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.6e-22 Score=205.23 Aligned_cols=237 Identities=16% Similarity=0.269 Sum_probs=194.3
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEEcCC---CeEEEEeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCee
Q 009059 266 VESCHFSP-DGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYS 340 (545)
Q Consensus 266 V~~l~~sp-dg~~latg~~dg~I~lwd~~~---~~~~~~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~~~ 340 (545)
+..+.|.. +.++|||++..|.|.+||+.. .+.+..|..|+..|+++.|++ ...+|++|+.||+|++||++..+.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S- 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS- 168 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-
Confidence 44566765 567999999999999999986 566678899999999999988 466899999999999999998765
Q ss_pred eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc-eeeEE-eccCCeeEEEEeCCCCEEEEEECCCeEEEEE
Q 009059 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILD 418 (545)
Q Consensus 341 ~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~-~~~~~-~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d 418 (545)
..++.+....|..+.|+|...+.|+++.+.|.+.+||++... +...+ .|.+.+.++.|+|++.+|++|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 777888889999999999988999999999999999998643 44433 4667899999999999999999999999999
Q ss_pred CCCCEE--EEEecCCCCCEEEEEEcCCCC-EEEEEe---CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcC-CCCEE
Q 009059 419 VETQVC--RLKLQGHKNQVHSVCWNTSGE-YLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSL 491 (545)
Q Consensus 419 ~~~~~~--~~~~~~h~~~I~~l~~sp~g~-~l~s~s---dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp-~~~~l 491 (545)
..+.+. +.++. ...+|.++.|-|... .|++++ |-.|+|||++.. ..+..++..|...++.++|.. +...+
T Consensus 249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP--YIP~~t~~eH~~~vt~i~W~~~d~~~l 325 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP--YIPYATFLEHTDSVTGIAWDSGDRINL 325 (839)
T ss_pred ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccc--cccceeeeccCccccceeccCCCceee
Confidence 986543 33343 457899999999875 466665 669999999865 356778889999999999966 44567
Q ss_pred EEEEcCCeEEEEeCC
Q 009059 492 LVIGCYETLELWNMT 506 (545)
Q Consensus 492 ~~~~~dg~I~iwd~~ 506 (545)
.+++.|+.|..-.++
T Consensus 326 ~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 326 WSCSKDGTVLQHLFK 340 (839)
T ss_pred EeecCccHHHHhhhh
Confidence 888888876554443
No 147
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.6e-21 Score=177.86 Aligned_cols=243 Identities=18% Similarity=0.265 Sum_probs=184.0
Q ss_pred EEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe----eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEE
Q 009059 299 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374 (545)
Q Consensus 299 ~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~----~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~ 374 (545)
..+++|.+.|++++|+.||++|+|++.|++|+||++++... +++.-. .-+..+.+.|.||...+++++-....++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEE
Confidence 45789999999999999999999999999999999986321 111111 1235788999999999999998888999
Q ss_pred EEECCCC---ceeeEE----------eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEc
Q 009059 375 YWSINNG---SCAGVF----------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 441 (545)
Q Consensus 375 lwd~~~~---~~~~~~----------~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~s 441 (545)
+|.+... .....+ ++.-.+..+-....+.+|++++.|..|.+|+++ |+.+..+......-+..+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 9987532 211111 122235566666777889999999999999999 88888777766677888999
Q ss_pred CCCCEEEEEe-CCcEEEEEcCCCC-----CcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe------
Q 009059 442 TSGEYLASVS-DELVRVWSIGSGS-----KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK------ 509 (545)
Q Consensus 442 p~g~~l~s~s-dg~I~vwd~~~~~-----~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~------ 509 (545)
|+|++|++++ .-.|+||.+--.+ ....+..+++|...|..++|+++...+++.+.||+++|||++-.-
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 9999999998 7789999974322 234566789999999999999999999999999999999985321
Q ss_pred -EE-----EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 510 -TL-----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 510 -~~-----~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
.+ .+.+-.+....++++|.|..||.+.. ..++++
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~ 357 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVF 357 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEE
Confidence 11 11222344458999999998876542 335443
No 148
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.3e-22 Score=214.53 Aligned_cols=274 Identities=20% Similarity=0.302 Sum_probs=216.1
Q ss_pred EEEEcCCCC-EEEEEe----------CCCcEEEEEcCC--C----eEEEEeccCCccEEEEEEcCCCCE----EEEEeCC
Q 009059 268 SCHFSPDGK-LLATGG----------HDKKAVLWCTES--F----TVKSTLEEHTQWITDVRFSPSLSR----LATSSAD 326 (545)
Q Consensus 268 ~l~~spdg~-~latg~----------~dg~I~lwd~~~--~----~~~~~l~~h~~~V~~l~~sp~~~~----l~t~s~d 326 (545)
.++|+|++. +||+|. .+.++.||.+.. . +.+..+. -....+.++|.+.+.. ||.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 478999887 666653 345666765532 1 2233332 3456889999987665 8899999
Q ss_pred CeEEEEECCCC-----CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE---eccCCeeEEEE
Q 009059 327 RTVRVWDTENP-----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KCQSGATQMRF 398 (545)
Q Consensus 327 g~I~vwd~~~~-----~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~---~~~~~v~~l~~ 398 (545)
|.|.+||...- ...+.++..|.+.|..++|++...+++++|+.||.|.|||+.+-+.-... ...+.|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999998652 12356778899999999999999999999999999999999875544433 23467999999
Q ss_pred eCCCCEEE-EEECCCeEEEEECCCCEEEEEecCCCC--CEEEEEEcCCC-CEEEEEe--CC--cEEEEEcCCCCCcceEE
Q 009059 399 QPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSG-EYLASVS--DE--LVRVWSIGSGSKGECIH 470 (545)
Q Consensus 399 sp~~~~l~-~~~~dg~I~i~d~~~~~~~~~~~~h~~--~I~~l~~sp~g-~~l~s~s--dg--~I~vwd~~~~~~~~~i~ 470 (545)
+..-..++ +++.+|.+.|||++..+.+..+..+.. .+..+.|+|++ ..|++++ |+ .|.+||++... ..+.
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~k 247 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPLK 247 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cchh
Confidence 98755555 555678999999999988887776554 47789999987 3444444 44 89999998654 4566
Q ss_pred EEeeCCCceEEEEEcCCC-CEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCC-EEEEEeCCCcEEEc
Q 009059 471 ELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIW 544 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~-~las~s~Dg~I~iW 544 (545)
++.+|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+ .+......+..+.|+|... .++.++.||.|.|+
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 778999999999999977 88999999999999999999999 7777788999999999876 88899999999987
No 149
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.8e-21 Score=185.18 Aligned_cols=243 Identities=19% Similarity=0.355 Sum_probs=189.6
Q ss_pred EEEEEcC-------CCCEEEEEeCCCcEEEEEcCCCe---EEE------------------EeccCCccEEEEEEcCC-C
Q 009059 267 ESCHFSP-------DGKLLATGGHDKKAVLWCTESFT---VKS------------------TLEEHTQWITDVRFSPS-L 317 (545)
Q Consensus 267 ~~l~~sp-------dg~~latg~~dg~I~lwd~~~~~---~~~------------------~l~~h~~~V~~l~~sp~-~ 317 (545)
.|++|.. -|+|+|.|+.|..|.|||+.-.. +.. ...+|+..|.+++|+.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5666643 36799999999999999975211 111 12369999999999875 4
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-CceeeEEeccCCeeEE
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQM 396 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~-~~~~~~~~~~~~v~~l 396 (545)
..||+|+.|.+|++||+.+++. ..++..|.+.|.++.|+|....++++|+.|++|.+.|.+. ...-..++..+.|..+
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 5899999999999999999875 8888889999999999999999999999999999999994 3344566777899999
Q ss_pred EEeCCCC-EEEEEECCCeEEEEECCCC-EEEEEecCCCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEE
Q 009059 397 RFQPRLG-RILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHEL 472 (545)
Q Consensus 397 ~~sp~~~-~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~ 472 (545)
+|.|... .+++++.||.|+-+|++.. +++.+++.|.+.|.+|+++..- .++++++ |+.|++|++..... ..+...
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~ 414 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEH 414 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccc
Confidence 9999654 4667778999999999975 9999999999999999998865 4566666 99999999976432 222222
Q ss_pred eeCCCceEEEEEcCCCCE-EEEEEcCCeEEEEeCCCCeEE
Q 009059 473 SCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 473 ~~~~~~v~~~~~sp~~~~-l~~~~~dg~I~iwd~~~~~~~ 511 (545)
.-.-+...|.++.|+-.+ +++|+..+.++|||+.+...+
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 222233667778887765 555566668999999877654
No 150
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=8.1e-21 Score=175.09 Aligned_cols=268 Identities=18% Similarity=0.291 Sum_probs=205.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCC------------eEEEEec-cCCccEEEEEEc-------CCCCEEEEEeC
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTESF------------TVKSTLE-EHTQWITDVRFS-------PSLSRLATSSA 325 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~~~------------~~~~~l~-~h~~~V~~l~~s-------p~~~~l~t~s~ 325 (545)
...+.|+|||..|++-+.|..+.+|++..- +...+++ .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 446999999999999999999999987520 0111111 123557777775 56779999999
Q ss_pred CCeEEEEECCCCCeeeeEec--cCcc---cEEEEEEeCCCCcEEEEEcCCCcEEEEEC-CCCceeeE---Ee-----ccC
Q 009059 326 DRTVRVWDTENPDYSLRTFT--GHST---TVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NNGSCAGV---FK-----CQS 391 (545)
Q Consensus 326 dg~I~vwd~~~~~~~~~~~~--~h~~---~V~~l~~~p~~~~ll~s~s~dg~I~lwd~-~~~~~~~~---~~-----~~~ 391 (545)
+.-|++||.-+++. ...+. .|.. ...+++|+|||..++ +| ....|++||+ +.|+.... +. ..+
T Consensus 132 ~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlf-aG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLF-AG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEe-ec-ccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 99999999998874 33333 2333 345899999998877 44 4789999999 55543221 11 134
Q ss_pred CeeEEEEeCCCC-EEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcce
Q 009059 392 GATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC 468 (545)
Q Consensus 392 ~v~~l~~sp~~~-~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~ 468 (545)
-+.+++|+|... .+++++....+-||.-....++..+-+|.+.|+.++|.++|+.|++|. |..|.+||++... ..
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~p 286 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR--DP 286 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--ch
Confidence 478999999655 677788888999999999999999999999999999999999999999 7799999998653 44
Q ss_pred EEEEeeCCC-ceEEE--EEcCCCCEEEEEEcCCeEEEEeCCC-CeEE-EeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 469 IHELSCTGN-KFHSC--VFHPTFPSLLVIGCYETLELWNMTE-NKTL-TLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 469 i~~~~~~~~-~v~~~--~~sp~~~~l~~~~~dg~I~iwd~~~-~~~~-~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
+..+..|.. .-..+ ...|++++|++|+.+|.|++||+++ +..+ .+..|...++.++++|--.++|+++..
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 455554443 33333 4578999999999999999999988 5534 777899999999999998888887754
No 151
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=8.3e-21 Score=178.32 Aligned_cols=241 Identities=22% Similarity=0.338 Sum_probs=189.5
Q ss_pred ccCCccEEEEEEcCC--CCEEEEEeCCCeEEEEECCC---------------CCeeeeEeccCcccEEEEEEeCCCCcEE
Q 009059 302 EEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTEN---------------PDYSLRTFTGHSTTVMSLDFHPSKEDLL 364 (545)
Q Consensus 302 ~~h~~~V~~l~~sp~--~~~l~t~s~dg~I~vwd~~~---------------~~~~~~~~~~h~~~V~~l~~~p~~~~ll 364 (545)
-.|.+.++.++..+- ..+.++-+..|.|.||++.. ...++.++.+|...=++++|+|-..-.+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 457777888877764 44666667889999999862 1235678889999999999999655556
Q ss_pred EEEcCCCcEEEEECCCCceee----EEeccCCeeEEEEeCC-CCEEEEEECCCeEEEEECCCC---EEEEEecCCCCCEE
Q 009059 365 CSCDNNSEIRYWSINNGSCAG----VFKCQSGATQMRFQPR-LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVH 436 (545)
Q Consensus 365 ~s~s~dg~I~lwd~~~~~~~~----~~~~~~~v~~l~~sp~-~~~l~~~~~dg~I~i~d~~~~---~~~~~~~~h~~~I~ 436 (545)
++|..-+.|++|...++.... ...+...|..++|+|. .+.|++++.||.|+|||++.+ .++.. +.|.+.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCcee
Confidence 688888899999998865432 2235567899999995 456777888999999999987 34443 78999999
Q ss_pred EEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC-CEEEEEEcCCeEEEEeCCCCeE----
Q 009059 437 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKT---- 510 (545)
Q Consensus 437 ~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~---- 510 (545)
.|.|+..-.+|++|+ ||+++|||++..+....+..++.|..+|+++.|+|.. ..|++++.|..|.|||+.-..-
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 999999888999999 8899999999988888999999999999999999965 5678888899999999843211
Q ss_pred -------------EEeccC--CCCeeEEEEeCCC-CEEEEEeCCCcEEEc
Q 009059 511 -------------LTLSAH--DKLVSSLAASTVN-GMVASASHDKCVKIW 544 (545)
Q Consensus 511 -------------~~~~~h--~~~V~~l~~spd~-~~las~s~Dg~I~iW 544 (545)
.-+.-| ...|..+.|++.- .+|++.+.|| +.||
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 012234 3568889999864 5899999998 4444
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=5.8e-21 Score=183.50 Aligned_cols=256 Identities=16% Similarity=0.247 Sum_probs=201.2
Q ss_pred EEcCCCeEEEEeccCCccEEEEEEcCCC--CEEEEEeCCCeEEEEECC---CCCeeeeEeccCcccEEEEEEeCCCCcEE
Q 009059 290 WCTESFTVKSTLEEHTQWITDVRFSPSL--SRLATSSADRTVRVWDTE---NPDYSLRTFTGHSTTVMSLDFHPSKEDLL 364 (545)
Q Consensus 290 wd~~~~~~~~~l~~h~~~V~~l~~sp~~--~~l~t~s~dg~I~vwd~~---~~~~~~~~~~~h~~~V~~l~~~p~~~~ll 364 (545)
+|+.+......++-+.++|++++|+|.. +++|+|..-|.|-+||+. .....+..+..|..+|.+|.|+|.....+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 4555555666777789999999999953 588999999999999994 22233667889999999999999988888
Q ss_pred EEEcCCCcEEEEECCCCceeeEEec---cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE-EEEecCCCCCEEEEEE
Q 009059 365 CSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCW 440 (545)
Q Consensus 365 ~s~s~dg~I~lwd~~~~~~~~~~~~---~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~-~~~~~~h~~~I~~l~~ 440 (545)
++.+.||+|++-|+++......+.. ......+.|+.+...++++..=|.+.+||+++... ...+.-|...|.++++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 8999999999999987654433332 22356778888888888998888999999998644 6667778999999999
Q ss_pred cCCC-CEEEEEe-CCcEEEEEcCCCCCcc-eEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC----CCeEEEe
Q 009059 441 NTSG-EYLASVS-DELVRVWSIGSGSKGE-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT----ENKTLTL 513 (545)
Q Consensus 441 sp~g-~~l~s~s-dg~I~vwd~~~~~~~~-~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~----~~~~~~~ 513 (545)
+|-. .+|++++ |++++|||++.-.... .+.....|...|.+..|+|.+-.|++.+.|..|+|||.. .......
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 9976 5677788 9999999998754433 234445688999999999999889999999999999984 2233333
Q ss_pred ccCCC------CeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 514 SAHDK------LVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 514 ~~h~~------~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
..|.. ......|.|+..+|++|-.-..|-|+|
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 33432 234568999999999999888888775
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.8e-20 Score=181.43 Aligned_cols=247 Identities=17% Similarity=0.237 Sum_probs=197.4
Q ss_pred CcccceeeeeecCCce-eeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 236 DPRDRVGRSAEVGKGF-TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~-~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
...|+.+++|.-.... .+..+..+.+. .-+|++......|+++||..+.|+|||+....+.+.+++|...|+++.++
T Consensus 53 ~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN 130 (673)
T KOG4378|consen 53 MAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN 130 (673)
T ss_pred cCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEec
Confidence 4557788888654431 12222223332 44555555555899999999999999999767778889999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccC-cccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccC
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQS 391 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~ 391 (545)
....|||+++..|.|.|..+.++.. ...|... ...|.-+.|+|..+.+|.+++.+|.|.+||+....++..+. |..
T Consensus 131 ~~DeyiAsvs~gGdiiih~~~t~~~-tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsA 209 (673)
T KOG4378|consen 131 NTDEYIASVSDGGDIIIHGTKTKQK-TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSA 209 (673)
T ss_pred CCcceeEEeccCCcEEEEecccCcc-ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccC
Confidence 9999999999999999999998764 4444433 34566999999999999999999999999999877766543 556
Q ss_pred CeeEEEEeCCCC-EEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceE
Q 009059 392 GATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 469 (545)
Q Consensus 392 ~v~~l~~sp~~~-~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i 469 (545)
+...++|+|... .|++.+.|..|++||.+..+....+. ...+...++|.++|.+|++|. .|.|..||++..+ ..+
T Consensus 210 P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv 286 (673)
T KOG4378|consen 210 PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APV 286 (673)
T ss_pred CcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCc
Confidence 788999999654 46678889999999999877666655 466889999999999999999 9999999999754 677
Q ss_pred EEEeeCCCceEEEEEcCCC
Q 009059 470 HELSCTGNKFHSCVFHPTF 488 (545)
Q Consensus 470 ~~~~~~~~~v~~~~~sp~~ 488 (545)
..+..|...|++++|-+.-
T Consensus 287 ~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 287 AVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eEeeecccceeEEEeeecc
Confidence 8888899999999998764
No 154
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.87 E-value=8.4e-20 Score=181.32 Aligned_cols=135 Identities=22% Similarity=0.354 Sum_probs=108.3
Q ss_pred CCCeEEEEECCCC-EE----EEEecCCCCCEEEEEEcC-CCCEEEEEe-CCcEEEEEcCCCCC----cceEEEEeeCCCc
Q 009059 410 IENYISILDVETQ-VC----RLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSK----GECIHELSCTGNK 478 (545)
Q Consensus 410 ~dg~I~i~d~~~~-~~----~~~~~~h~~~I~~l~~sp-~g~~l~s~s-dg~I~vwd~~~~~~----~~~i~~~~~~~~~ 478 (545)
..|.|-||+++.. +. +-.+. ....|+.+.|.| |...|++++ ||.|++|.+..+.. ...-..+..|...
T Consensus 601 ~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK 679 (1012)
T KOG1445|consen 601 SGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK 679 (1012)
T ss_pred CCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce
Confidence 4567777777642 11 11111 456799999999 556777777 89999999987533 2344567789999
Q ss_pred eEEEEEcCCC-CEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 479 FHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 479 v~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|+++.|+|-. ..|++++.|.+|++||+.+.+.. .+.+|.+.|..++|||+|+.+|+.+.||+|++|+
T Consensus 680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 9999999964 56788889999999999998877 8999999999999999999999999999999985
No 155
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=1.4e-20 Score=187.44 Aligned_cols=250 Identities=16% Similarity=0.234 Sum_probs=187.1
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEE--eccCCccEEEEEEcCC-CCEEEEEeCCCeEEEE
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPS-LSRLATSSADRTVRVW 332 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~--l~~h~~~V~~l~~sp~-~~~l~t~s~dg~I~vw 332 (545)
+....+|.+.|..+.|-|....|++++.|.++++||++..+++.. +.+|...|.+++|.+. ...|++|+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 355678999999999999666899999999999999999888866 8899999999999995 5588999999999999
Q ss_pred ECCCCCe--------------------------eeeEeccCcccEEE---EEEeCCCCcEEEEEcC-CCcEEEEECCCCc
Q 009059 333 DTENPDY--------------------------SLRTFTGHSTTVMS---LDFHPSKEDLLCSCDN-NSEIRYWSINNGS 382 (545)
Q Consensus 333 d~~~~~~--------------------------~~~~~~~h~~~V~~---l~~~p~~~~ll~s~s~-dg~I~lwd~~~~~ 382 (545)
|++-... .+.....+...|.+ +.+..|.. .|++++. |+.|+|||++...
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccc
Confidence 9873320 01112233334444 33444544 4556655 9999999998755
Q ss_pred eeeEEe--------c----cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCC--EEEEEecCCCC--CEEEEEEcCCCCE
Q 009059 383 CAGVFK--------C----QSGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQGHKN--QVHSVCWNTSGEY 446 (545)
Q Consensus 383 ~~~~~~--------~----~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~--~I~~l~~sp~g~~ 446 (545)
+..... . .-++.++.....|.+|++.+.|+.|+.|++.+. .++..+.++.. .-..-..+|++.+
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS 331 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence 433221 1 124778888888999999999999999999864 33444444322 2223356899999
Q ss_pred EEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC-CEEEEEEcCCeEEEEeCCCC
Q 009059 447 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 447 l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~ 508 (545)
|++|+ |...++|.+.+.. .....+.+|.-.|++++|.|.. .-+++++.|..++||++..+
T Consensus 332 l~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 332 LLSGSSDEQAYIWVVSSPE--APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EeccCCCcceeeeeecCcc--CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 99999 9999999998764 4455677899999999998753 23777788889999999654
No 156
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.6e-20 Score=185.58 Aligned_cols=242 Identities=19% Similarity=0.266 Sum_probs=198.7
Q ss_pred EEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEE
Q 009059 298 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 377 (545)
Q Consensus 298 ~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd 377 (545)
-..+.+|++.|.+|...|.|.+|++|+.||+|+||.+.++.+ ++++. ..+.|.|++|+|.....++..+.+..+.+.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc-vr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC-VRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE-EEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 345689999999999999999999999999999999999875 76665 4568999999998766554444444444444
Q ss_pred CCCC--------------------------------------ceeeEEeccCCeeEEEEeCCCCEEEEEECC---CeEEE
Q 009059 378 INNG--------------------------------------SCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISI 416 (545)
Q Consensus 378 ~~~~--------------------------------------~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d---g~I~i 416 (545)
..-| .....+.+...|..+.|+..|.+|++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 3211 012344566778999999999999988764 47999
Q ss_pred EECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc
Q 009059 417 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 496 (545)
Q Consensus 417 ~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~ 496 (545)
+++.......-|....+.|.++.|+|...+|++++...|+|||+... ..+..+......|..++++|.|..|++++.
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence 99987766666766778999999999999999999999999999765 555566666778999999999999999999
Q ss_pred CCeEEEEeCCCCeE-E-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 497 YETLELWNMTENKT-L-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 497 dg~I~iwd~~~~~~-~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
|+.+..||+.-... . ++..|...|++++|++.-.++++|+.||++.||
T Consensus 628 d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 99999999976533 3 788899999999999999999999999999886
No 157
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=5.8e-20 Score=174.37 Aligned_cols=279 Identities=17% Similarity=0.262 Sum_probs=207.7
Q ss_pred CCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCC---------eEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEE
Q 009059 262 STSKVESCHFSPDGK-LLATGGHDKKAVLWCTESF---------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 331 (545)
Q Consensus 262 H~~~V~~l~~spdg~-~latg~~dg~I~lwd~~~~---------~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~v 331 (545)
...+|..+.|.++.. .||||+.|..|+||-++.. +....+..|...|+++.|+|+|.+||+|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 345799999999776 9999999999999977532 233567789999999999999999999999999999
Q ss_pred EECC--------C-----C--CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeE
Q 009059 332 WDTE--------N-----P--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQ 395 (545)
Q Consensus 332 wd~~--------~-----~--~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~ 395 (545)
|... + . -...+.+.+|...|+.++|+|++. ++++++.|..+++||+..|.....+..+ ..+..
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG 170 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccceeEeeccccccccce
Confidence 9766 2 1 112356778999999999999975 5559999999999999999998877644 45889
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec--------C-----------CC----CCEEEEEEcCCCCEEEEEe-
Q 009059 396 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------G-----------HK----NQVHSVCWNTSGEYLASVS- 451 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--------~-----------h~----~~I~~l~~sp~g~~l~s~s- 451 (545)
++|.|-+.++++-+.|...+++.+.....+.... . |. .....++|+|+|.+|++..
T Consensus 171 vawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 171 VAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred eecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence 9999998999988888877777765443322111 0 11 1345678999999988753
Q ss_pred ----CC-----cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcC-----------------CCCEEEEEEcCCeEEEEeC
Q 009059 452 ----DE-----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-----------------TFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 452 ----dg-----~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp-----------------~~~~l~~~~~dg~I~iwd~ 505 (545)
.+ ..++|+-.. ....+..+.+.......+.|+| -++.+++....+.|+|||.
T Consensus 251 ~~~~g~~~~~n~tYvfsrk~--l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydt 328 (434)
T KOG1009|consen 251 LFKVGGGVFRNTSYVFSRKD--LKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDT 328 (434)
T ss_pred eeeeCCceeeceeEeecccc--ccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecc
Confidence 22 234554332 1233344444444444444443 2345677777789999999
Q ss_pred CCCeEE--EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 506 TENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 506 ~~~~~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
.+-.++ .-.-|-..|+.++|++||.+|+..+.||...+
T Consensus 329 q~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 329 QTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred ccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 998777 33458899999999999999999999997543
No 158
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3e-20 Score=175.00 Aligned_cols=286 Identities=15% Similarity=0.210 Sum_probs=213.3
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC------CeEEEEec-cCCccEEEEEEcCCCCEEEEEeCCC
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~------~~~~~~l~-~h~~~V~~l~~sp~~~~l~t~s~dg 327 (545)
..+-+.+|.+.|.++.|+.++++||+|+.|..++||+++. .+++.... .|...|.|++|....+.|++|..++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 3456789999999999999999999999999999999863 34444443 4668999999999999999999999
Q ss_pred eEEEEECCCCCeeeeEec--cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc----eeeEEeccCCeeEEEEeCC
Q 009059 328 TVRVWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVFKCQSGATQMRFQPR 401 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~--~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~----~~~~~~~~~~v~~l~~sp~ 401 (545)
+|.+.|+++... +..+. ...+.|+.+..+|. .+++++.+.++.|.+||++... ++..-........+.|+|.
T Consensus 128 ~VI~HDiEt~qs-i~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 128 TVIKHDIETKQS-IYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred eeEeeeccccee-eeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 999999998654 44443 22358999999999 5667788899999999998654 2222233455788999997
Q ss_pred CCEEE-EEECCCeEEEEECCCCEE-EEEe------cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEE
Q 009059 402 LGRIL-AAAIENYISILDVETQVC-RLKL------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 472 (545)
Q Consensus 402 ~~~l~-~~~~dg~I~i~d~~~~~~-~~~~------~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~ 472 (545)
...|+ +....+.+.+||.+.... +... ......-..+.|+|+|..|.+.- ...-.+||+-+.. ..+..+
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R--~~V~k~ 283 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR--CFVLKS 283 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc--ceeEec
Confidence 66554 555678999999986432 2221 11122346788999999888776 4466677876531 122222
Q ss_pred ee------CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC------------------------CeEEEeccCCCCeeE
Q 009059 473 SC------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE------------------------NKTLTLSAHDKLVSS 522 (545)
Q Consensus 473 ~~------~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~------------------------~~~~~~~~h~~~V~~ 522 (545)
.. ....+.+|+|..+.. +++|+.+-.|++|.+.. +....+.+|...++.
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred cCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 21 123467788887776 88888888999998732 122367799999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEcC
Q 009059 523 LAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 523 l~~spd~~~las~s~Dg~I~iWd 545 (545)
+.|+|...+|++.+..+.+|||-
T Consensus 363 VRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 363 VRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eeecCCcceEeccchhhheeccc
Confidence 99999999999999999999993
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=5.8e-18 Score=173.73 Aligned_cols=298 Identities=28% Similarity=0.439 Sum_probs=237.3
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~-dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
.+..+++|+... .......+..|...|.+++|+|+++++++++. |+.+++|+...+..+..+.+|...|.+++|+|+
T Consensus 132 ~d~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 209 (466)
T COG2319 132 LDGTVKLWDLST--PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPD 209 (466)
T ss_pred CCccEEEEEecC--CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCC
Confidence 366888898776 23356778899999999999999999988885 999999999998899999999999999999999
Q ss_pred CC-EEEEEeCCCeEEEEECCCCCeeee-EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce-eeEE-eccCC
Q 009059 317 LS-RLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-KCQSG 392 (545)
Q Consensus 317 ~~-~l~t~s~dg~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~-~~~~-~~~~~ 392 (545)
+. ++++++.|+.|++||...+.. +. .+.+|...+ ...|++++ .++++++.|+.+++|++..... ...+ .+...
T Consensus 210 ~~~~~~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 286 (466)
T COG2319 210 GGLLIASGSSDGTIRLWDLSTGKL-LRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS 286 (466)
T ss_pred cceEEEEecCCCcEEEEECCCCcE-EeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCcc
Confidence 88 555658999999999885554 45 688888776 44899997 5566899999999999987664 3333 34567
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec--CCCCCEEEEEEcCCCCEEEEE-e-CCcEEEEEcCCCCCcce
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSKGEC 468 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~s~-s-dg~I~vwd~~~~~~~~~ 468 (545)
+.++.|.|++..+++++.|+.+.+||..+........ .|...+..+.|.+++..++.+ . |+.+.+|++.... .
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~ 363 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---P 363 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---e
Confidence 8999999988888888889889999999887766665 788889999994332556655 4 8889999998763 2
Q ss_pred EEEEeeCCCceEEEEEcCCCCEEEE-EEcCCeEEEEeCCCCeEEEeccCC-CCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 469 IHELSCTGNKFHSCVFHPTFPSLLV-IGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 469 i~~~~~~~~~v~~~~~sp~~~~l~~-~~~dg~I~iwd~~~~~~~~~~~h~-~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
...... ...+..+.+.+ ...++. +..++.+.+|+............. ..+....+++++.++++++.++.+++|+
T Consensus 364 ~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 364 LKTLEG-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred eEEecC-CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 222222 22288889988 543444 578889999999998888554444 8899999999999999999999999995
No 160
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.6e-21 Score=204.91 Aligned_cols=243 Identities=19% Similarity=0.355 Sum_probs=201.2
Q ss_pred CCeEEEEEcCCCCE----EEEEeCCCcEEEEEcCCC------eEEEEeccCCccEEEEEEcCCCC-EEEEEeCCCeEEEE
Q 009059 264 SKVESCHFSPDGKL----LATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVW 332 (545)
Q Consensus 264 ~~V~~l~~spdg~~----latg~~dg~I~lwd~~~~------~~~~~l~~h~~~V~~l~~sp~~~-~l~t~s~dg~I~vw 332 (545)
.+.+.++|.+.|.. ||.|..||.|.+||.... ..+.++..|.+.|..+.|++... +||+|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 34677999987665 888999999999997652 34466778999999999999654 99999999999999
Q ss_pred ECCCCCeeeeE-eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC---eeEEEEeCCCC-EEEE
Q 009059 333 DTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG---ATQMRFQPRLG-RILA 407 (545)
Q Consensus 333 d~~~~~~~~~~-~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~---v~~l~~sp~~~-~l~~ 407 (545)
|+.+.+.+... -....+.|.+++|+..-.++|++++.+|.+.|||++..+.+-.+..... +..+.|+|+.. .+++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 99976543332 2224578999999998889999999999999999998887776664444 77899999865 4555
Q ss_pred EECCC---eEEEEECCCC-EEEEEecCCCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEE
Q 009059 408 AAIEN---YISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 481 (545)
Q Consensus 408 ~~~dg---~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~ 481 (545)
++.|. .|.+||++.. ..++.+++|...|.++.|++.+ ++|++++ |+.|.+|+..++ +.+.++....+++..
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCFD 301 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCcceee
Confidence 55543 7999999864 5677788999999999999977 7788877 999999999988 888899888999999
Q ss_pred EEEcCCCC-EEEEEEcCCeEEEEeCCCCe
Q 009059 482 CVFHPTFP-SLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 482 ~~~sp~~~-~l~~~~~dg~I~iwd~~~~~ 509 (545)
+.|.|... .+++++-+|.|.||.+.+..
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999887 67888899999999987654
No 161
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=6.9e-20 Score=175.66 Aligned_cols=237 Identities=14% Similarity=0.298 Sum_probs=184.0
Q ss_pred cEEEEEEcC-------CCCEEEEEeCCCeEEEEECCCCC--eeee------------------EeccCcccEEEEEEeCC
Q 009059 307 WITDVRFSP-------SLSRLATSSADRTVRVWDTENPD--YSLR------------------TFTGHSTTVMSLDFHPS 359 (545)
Q Consensus 307 ~V~~l~~sp-------~~~~l~t~s~dg~I~vwd~~~~~--~~~~------------------~~~~h~~~V~~l~~~p~ 359 (545)
...|++|.. .|+|+|.|+.|..|.|||+.-.. .+.. .-.+|+..|.++.|+..
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 346777743 36799999999999999986211 1111 12368999999999999
Q ss_pred CCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCC-CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEE
Q 009059 360 KEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHS 437 (545)
Q Consensus 360 ~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~ 437 (545)
-..+|++|+.|.+|++||+.++++...+. +...|.++.|+|.. ..|++|+.|++|.++|.+........-...+.|-.
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk 334 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK 334 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEE
Confidence 89999999999999999999999999998 45679999999964 56778889999999999953222211124578999
Q ss_pred EEEcCCCCEEE-EEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCC-EEEEEEcCCeEEEEeCCCCeEEEec
Q 009059 438 VCWNTSGEYLA-SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENKTLTLS 514 (545)
Q Consensus 438 l~~sp~g~~l~-s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~~~~~~~ 514 (545)
++|.|.....+ ++. ||+|+-+|+|... .++.++..|...|.++++++.-+ ++++++.++.|++|++.........
T Consensus 335 v~w~~~se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~ 412 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK 412 (463)
T ss_pred EEecCCCceeEEEecCCceEEeeecCCCC--CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc
Confidence 99999765433 344 9999999999764 78999999999999999988764 5778888999999999766554333
Q ss_pred cCC---CCeeEEEEeCCCC-EEEEEeCCCcEEEcC
Q 009059 515 AHD---KLVSSLAASTVNG-MVASASHDKCVKIWK 545 (545)
Q Consensus 515 ~h~---~~V~~l~~spd~~-~las~s~Dg~I~iWd 545 (545)
.|. +...|+++.|+-. +||.|+..+.++|||
T Consensus 413 ~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 413 EHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred cccccccceeecccCCCcceEEEecCccceEEEee
Confidence 333 3456667777654 778888888999997
No 162
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=6.8e-18 Score=173.25 Aligned_cols=284 Identities=30% Similarity=0.505 Sum_probs=228.2
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-EEEEeccCC-ccEEEEEE-cCCCC-EEEEEeC-CCeEEEE
Q 009059 258 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHT-QWITDVRF-SPSLS-RLATSSA-DRTVRVW 332 (545)
Q Consensus 258 ~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~-~~~~l~~h~-~~V~~l~~-sp~~~-~l~t~s~-dg~I~vw 332 (545)
.+..|...|.++.|.+.+..++.++.|+.+.+|+..... ....+..+. ..+..+.+ .+++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 466889999999999999999999999999999998876 666666644 37777777 78777 5555445 9999999
Q ss_pred ECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcC-CCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCCEEEEE-E
Q 009059 333 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA-A 409 (545)
Q Consensus 333 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~-dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~~~-~ 409 (545)
+..........+..|...|..++|+|++. .+++++. |+.+++|++..+..+..+.. ...+.+++|+|++..++++ +
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 99873344788889999999999999987 4446664 99999999998777777774 5679999999987744444 7
Q ss_pred CCCeEEEEECCCCEEEE-EecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCC
Q 009059 410 IENYISILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 487 (545)
Q Consensus 410 ~dg~I~i~d~~~~~~~~-~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~ 487 (545)
.|+.|.+||...+.... .+.+|.... ...|++++.++++++ |+.+++|++..... .+..+..|...+.++.|.|+
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~ 295 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPD 295 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEEecCCccEEEEEECCC
Confidence 89999999999887777 688888875 448999998888777 99999999987643 23333667889999999998
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeEE-Eec--cCCCCeeEEEEeCCCCEEEEE-eCCCcEEEcC
Q 009059 488 FPSLLVIGCYETLELWNMTENKTL-TLS--AHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 545 (545)
Q Consensus 488 ~~~l~~~~~dg~I~iwd~~~~~~~-~~~--~h~~~V~~l~~spd~~~las~-s~Dg~I~iWd 545 (545)
+..+++++.++.+.+||....... ... .|...+..+.|.+++..++.+ ..|+.+.+|+
T Consensus 296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 888888888888999999888766 333 788889999994332455555 6888898885
No 163
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.85 E-value=1.5e-20 Score=168.85 Aligned_cols=285 Identities=19% Similarity=0.207 Sum_probs=202.8
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec-cCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~-~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
++..+++|.+.|+|+.|-.+++ |.+|..-|.|++|++.+.+....++ .|...|+.+.--|+ ..|.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 4567889999999999998774 8889999999999999988888888 67888999998887 5788889999999999
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCC-----CC---cEEEEEcCCC-cEEEEECCCCceeeEEe-----ccCCeeEEEEe
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPS-----KE---DLLCSCDNNS-EIRYWSINNGSCAGVFK-----CQSGATQMRFQ 399 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~-----~~---~ll~s~s~dg-~I~lwd~~~~~~~~~~~-----~~~~v~~l~~s 399 (545)
+..... ..-|.-.++++.|.+. .+ .+++.-++.. .+.+-|......+.... ..+.+.+..+.
T Consensus 84 ia~s~~----i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 84 IAYSAF----ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred ccCcce----EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 986443 1223344555555432 11 1121111100 11112221111111111 11235555543
Q ss_pred CC-CC--EEEEEECCCeEEEEECCCCEEEE----------EecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC-
Q 009059 400 PR-LG--RILAAAIENYISILDVETQVCRL----------KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS- 464 (545)
Q Consensus 400 p~-~~--~l~~~~~dg~I~i~d~~~~~~~~----------~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~- 464 (545)
.. +. .+++|..+|.+.+||+.++..+. ....|..+|.++.+.+.-..=++|+ +..+..|++....
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 32 22 35566679999999999974433 3445889999999987544445555 7788999886542
Q ss_pred CcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 465 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 465 ~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
......++......|..+.+.||++.+++++.|+.|+||..++...+ .+..|.+.|++++|+|+..++|.++.|++|.+
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISL 319 (323)
T ss_pred cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence 11222334445667899999999999999999999999999999988 77889999999999999999999999999999
Q ss_pred cC
Q 009059 544 WK 545 (545)
Q Consensus 544 Wd 545 (545)
|+
T Consensus 320 Wk 321 (323)
T KOG0322|consen 320 WK 321 (323)
T ss_pred ee
Confidence 96
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2e-20 Score=184.38 Aligned_cols=256 Identities=20% Similarity=0.289 Sum_probs=200.5
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--------CCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCe
Q 009059 257 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 328 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~--------~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~ 328 (545)
.++..|.+.|..++|.+-...|++++.||+|.+|++. ..+++.+|.+|.++|.|+++.+++..+++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 3788999999999999999999999999999999983 24677899999999999999999999999999999
Q ss_pred EEEEECCCC---------CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe---ccCCeeEE
Q 009059 329 VRVWDTENP---------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQM 396 (545)
Q Consensus 329 I~vwd~~~~---------~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~---~~~~v~~l 396 (545)
|+.|++... ......+.||.+.|+.++++.....|+ +|+.||++++|+...... .+|. ..+....+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll-scs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL-SCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSV 445 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeeccccccee-eecCCceEEeeccCCcCc-cccCCccccCCcceE
Confidence 999966421 123457889999999999999866655 999999999999887665 3332 22334555
Q ss_pred EEeCCC-CEEEEEECCCeEEEEECCCCEEEEEecC-------CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcc
Q 009059 397 RFQPRL-GRILAAAIENYISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 467 (545)
Q Consensus 397 ~~sp~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~-------h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~ 467 (545)
.+.... ...++...-+.-.+++.+....+..+.. ....+..+.++|.+.+.+++. |+.|+++|..++ .
T Consensus 446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~---~ 522 (577)
T KOG0642|consen 446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG---K 522 (577)
T ss_pred eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc---c
Confidence 554432 2233333344444555555544444332 124578889999999988888 889999999888 7
Q ss_pred eEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCC
Q 009059 468 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD 517 (545)
Q Consensus 468 ~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~ 517 (545)
.++....|...++++++.|+|.+|++++.|+.+++|.+....++ ....|.
T Consensus 523 ~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred cchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 88888899999999999999999999999999999999777665 444443
No 165
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.5e-19 Score=163.79 Aligned_cols=233 Identities=15% Similarity=0.238 Sum_probs=180.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE
Q 009059 308 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 387 (545)
Q Consensus 308 V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~ 387 (545)
..|+.|++.|.+||+|+.||.|.|||+.+... .+.+.+|..+|.+++|+++|..|+ +++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i-ar~lsaH~~pi~sl~WS~dgr~Ll-tsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI-ARMLSAHVRPITSLCWSRDGRKLL-TSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch-hhhhhccccceeEEEecCCCCEee-eecCCceeEEEeccCCCceeEE
Confidence 78999999999999999999999999998764 788999999999999999987666 9999999999999999999999
Q ss_pred eccCCeeEEEEeCCCCEEEEEE-CCCeEEEEECCCCEEEEEecCCC----CCEEEEEEcCCCCEEEEEe-CCcEEEEEcC
Q 009059 388 KCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHK----NQVHSVCWNTSGEYLASVS-DELVRVWSIG 461 (545)
Q Consensus 388 ~~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~----~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~ 461 (545)
....+|..+.|+|.....++++ .+..-.+.++...+....-.... ....+..|.+.|+|+++|. .|.+.++|..
T Consensus 104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 9999999999999655444433 34444455554422111111111 1223346889999999999 8999999998
Q ss_pred CCCCcceEEEEeeCC-CceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE----Eec-cC-------CCCeeEEEEeCC
Q 009059 462 SGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLS-AH-------DKLVSSLAASTV 528 (545)
Q Consensus 462 ~~~~~~~i~~~~~~~-~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~----~~~-~h-------~~~V~~l~~spd 528 (545)
+. +++..++... ..|..+.|+..|++|+.-+.|..|+.|+++.-... ... .| ...=.+++|+.+
T Consensus 184 t~---e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 184 TL---ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred hh---eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence 77 7888877666 78999999999999999999999999998632111 110 11 122346789999
Q ss_pred CCEEEEEeCC-CcEEEcC
Q 009059 529 NGMVASASHD-KCVKIWK 545 (545)
Q Consensus 529 ~~~las~s~D-g~I~iWd 545 (545)
|.|++.++.. ..++||.
T Consensus 261 geYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 261 GEYVCAGSARAHALYIWE 278 (405)
T ss_pred ccEEEeccccceeEEEEe
Confidence 9999887743 4688884
No 166
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.84 E-value=1.7e-17 Score=166.86 Aligned_cols=265 Identities=12% Similarity=0.142 Sum_probs=186.2
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcC-CCeE--EEEeccCCccEEEEEE
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE-SFTV--KSTLEEHTQWITDVRF 313 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~-~dg~I~lwd~~-~~~~--~~~l~~h~~~V~~l~~ 313 (545)
.+..+++|+..+...+..++.+.. .+....++++|++++|++++ .++.|.+|++. +++. +.... .......++|
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~ 87 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIST 87 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEE
Confidence 356778888864445556666653 45677899999999987764 57899999986 3332 22222 2345678999
Q ss_pred cCCCCEEEEEeC-CCeEEEEECCCCCe---eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee----
Q 009059 314 SPSLSRLATSSA-DRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG---- 385 (545)
Q Consensus 314 sp~~~~l~t~s~-dg~I~vwd~~~~~~---~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~---- 385 (545)
+|++++|++++. ++.|.+|++++... .+..+. +...+.+++++|+++.++++...++.|.+||+.+...+.
T Consensus 88 ~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~ 166 (330)
T PRK11028 88 DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEP 166 (330)
T ss_pred CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCC
Confidence 999999888765 88999999974332 122222 334567788999998888888888999999997633221
Q ss_pred ---EEeccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCC--C--EEEEEecCC------CCCEEEEEEcCCCCEEEEEe
Q 009059 386 ---VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET--Q--VCRLKLQGH------KNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 386 ---~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~--~--~~~~~~~~h------~~~I~~l~~sp~g~~l~s~s 451 (545)
..........+.|+|++++++++.. ++.|.+||+.. + +.+..+..+ ......+.++|++++|+++.
T Consensus 167 ~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~ 246 (330)
T PRK11028 167 AEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD 246 (330)
T ss_pred CceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec
Confidence 1223455788999999999988876 89999999973 2 333333221 12334688999999999986
Q ss_pred --CCcEEEEEcCCCC-CcceEEEEeeCCCceEEEEEcCCCCEEEEEEc-CCeEEEEeCC
Q 009059 452 --DELVRVWSIGSGS-KGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 506 (545)
Q Consensus 452 --dg~I~vwd~~~~~-~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~I~iwd~~ 506 (545)
++.|.+|++.... ....+..... ......+.|+|++++|+++.. +++|.+|+++
T Consensus 247 ~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 247 RTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 6799999996542 1122333322 235567899999999998886 7799999874
No 167
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.84 E-value=6.9e-18 Score=169.69 Aligned_cols=265 Identities=10% Similarity=0.183 Sum_probs=183.1
Q ss_pred EEEeCCCcEEEEEcCC-Ce--EEEEeccCCccEEEEEEcCCCCEEEEEe-CCCeEEEEECCC-CCeeeeEeccCcccEEE
Q 009059 279 ATGGHDKKAVLWCTES-FT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN-PDYSLRTFTGHSTTVMS 353 (545)
Q Consensus 279 atg~~dg~I~lwd~~~-~~--~~~~l~~h~~~V~~l~~sp~~~~l~t~s-~dg~I~vwd~~~-~~~~~~~~~~h~~~V~~ 353 (545)
++...++.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|++.. +...........+....
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 3446789999999964 33 445554 345677899999999987765 478899999973 22211111123345678
Q ss_pred EEEeCCCCcEEEEEcCCCcEEEEECCC-Cc---eeeEEeccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEE--
Q 009059 354 LDFHPSKEDLLCSCDNNSEIRYWSINN-GS---CAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRL-- 426 (545)
Q Consensus 354 l~~~p~~~~ll~s~s~dg~I~lwd~~~-~~---~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~-- 426 (545)
++|+|+++.++++...++.|.+|++.+ +. .+..+........++++|++++++++.. ++.|.+||+.+...+.
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 999999988887777789999999974 22 2233333345778899999999877765 6999999997632221
Q ss_pred -----EecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCC-CCcceEEEEeeC------CCceEEEEEcCCCCEEE
Q 009059 427 -----KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCT------GNKFHSCVFHPTFPSLL 492 (545)
Q Consensus 427 -----~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~-~~~~~i~~~~~~------~~~v~~~~~sp~~~~l~ 492 (545)
... .......+.|+|+|++++++. ++.|.+|++... .....+..+... ......+.++|++++++
T Consensus 165 ~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly 243 (330)
T PRK11028 165 EPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY 243 (330)
T ss_pred CCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE
Confidence 111 234567899999999998887 779999999742 122334443321 11234688999999999
Q ss_pred EEEc-CCeEEEEeCCCCe-EEEeccC---CCCeeEEEEeCCCCEEEEEeC-CCcEEEcC
Q 009059 493 VIGC-YETLELWNMTENK-TLTLSAH---DKLVSSLAASTVNGMVASASH-DKCVKIWK 545 (545)
Q Consensus 493 ~~~~-dg~I~iwd~~~~~-~~~~~~h---~~~V~~l~~spd~~~las~s~-Dg~I~iWd 545 (545)
++.. ++.|.+|++.... ...+.++ ......+.|+|+|++|+++.. +++|.||+
T Consensus 244 v~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 244 ACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 9865 5699999985432 2222222 235678999999999998775 88999984
No 168
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=1.2e-18 Score=164.83 Aligned_cols=228 Identities=14% Similarity=0.258 Sum_probs=185.6
Q ss_pred EeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCC------eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCc
Q 009059 300 TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 372 (545)
Q Consensus 300 ~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~------~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~ 372 (545)
.+.+|+++|.+++|+| +...||+|+.|.+|.||.+..+. .++..+.+|...|-.++|+|.-.++|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3568999999999999 66789999999999999987543 3467889999999999999999999999999999
Q ss_pred EEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCC-CEEEEEEcCCCCEEEEEe
Q 009059 373 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 373 I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~-~I~~l~~sp~g~~l~s~s 451 (545)
|.+||+.+++.+..+.+..-|.++.|+.+|..+++++.|..|+|||.++++.+..-.+|.+ .-..+.|..+|.++.+|.
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf 235 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF 235 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc
Confidence 9999999999999999889999999999999999999999999999999999988877876 445667888899777664
Q ss_pred ----CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCCeEEEEeCCCCeEE--E--eccCCCCeeE
Q 009059 452 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTL--T--LSAHDKLVSS 522 (545)
Q Consensus 452 ----dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~--~--~~~h~~~V~~ 522 (545)
+..+-+||....+......++.. .+.|.---|.++...++.++ .|+.|+.|.+...... . ......+-..
T Consensus 236 sr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG 314 (472)
T KOG0303|consen 236 SRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRG 314 (472)
T ss_pred ccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccc
Confidence 56899999887766555555553 45676677889888776665 5779999999877633 1 1123334445
Q ss_pred EEEeCC
Q 009059 523 LAASTV 528 (545)
Q Consensus 523 l~~spd 528 (545)
+.|-|.
T Consensus 315 ~g~mPK 320 (472)
T KOG0303|consen 315 MGFMPK 320 (472)
T ss_pred cccccc
Confidence 555553
No 169
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=1.2e-18 Score=165.52 Aligned_cols=254 Identities=19% Similarity=0.237 Sum_probs=189.9
Q ss_pred eeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--------C--------CeEEEEeccCCccEEEEEEcC
Q 009059 252 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------S--------FTVKSTLEEHTQWITDVRFSP 315 (545)
Q Consensus 252 ~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~--------~--------~~~~~~l~~h~~~V~~l~~sp 315 (545)
.+..+..|..|...|++|.|+|+|++||+|+.+|.|.+|... + ......+.+|...|..++|+|
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence 556678889999999999999999999999999999999754 2 334567789999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-------
Q 009059 316 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------- 388 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~------- 388 (545)
++.++++++.|..+++||+..+.. ...+.+|...|..++|.|-+.+ +++-+.|...+.+.+.....+....
T Consensus 134 d~~~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvqgvawDpl~qy-v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~ 211 (434)
T KOG1009|consen 134 DSNFLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQGVAWDPLNQY-VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAK 211 (434)
T ss_pred CCceeeeeeccceEEEEEecccee-Eeeccccccccceeecchhhhh-hhhhccCcccceeeeeeeeeeeeeeeeEeeec
Confidence 999999999999999999998875 8889999999999999998654 4477777767776665433222111
Q ss_pred -------------ccC----CeeEEEEeCCCCEEEEEEC----CC-----eEEEEECCC-CEEEEEecCCCCCEEEEEEc
Q 009059 389 -------------CQS----GATQMRFQPRLGRILAAAI----EN-----YISILDVET-QVCRLKLQGHKNQVHSVCWN 441 (545)
Q Consensus 389 -------------~~~----~v~~l~~sp~~~~l~~~~~----dg-----~I~i~d~~~-~~~~~~~~~h~~~I~~l~~s 441 (545)
+.. -...++|+|+|..+++.+. .+ ..++|+-.. .++...+.....++..+.|+
T Consensus 212 ~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~ 291 (434)
T KOG1009|consen 212 AFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFS 291 (434)
T ss_pred ccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEee
Confidence 001 1346789999888887542 22 345665443 24455555555555555554
Q ss_pred C------------------CCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEE
Q 009059 442 T------------------SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 503 (545)
Q Consensus 442 p------------------~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iw 503 (545)
| .+-.++.++.+.|+|||..+.....++ -..|...++.++|+++|..|++.+.||..-+.
T Consensus 292 pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v--~nihy~~iTDiaws~dg~~l~vSS~DGyCS~v 369 (434)
T KOG1009|consen 292 PVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVV--DNIHYSAITDIAWSDDGSVLLVSSTDGFCSLV 369 (434)
T ss_pred eeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEE--eeeeeeeecceeecCCCcEEEEeccCCceEEE
Confidence 4 344567777889999999876443333 34578899999999999999999999966555
Q ss_pred eCCCCe
Q 009059 504 NMTENK 509 (545)
Q Consensus 504 d~~~~~ 509 (545)
-++..+
T Consensus 370 tfe~~e 375 (434)
T KOG1009|consen 370 TFEPWE 375 (434)
T ss_pred EEcchh
Confidence 554433
No 170
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.7e-19 Score=166.39 Aligned_cols=269 Identities=16% Similarity=0.293 Sum_probs=189.8
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCee-eeEeccCc-ccE
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYS-LRTFTGHS-TTV 351 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp--~~~~l~t~s~dg~I~vwd~~~~~~~-~~~~~~h~-~~V 351 (545)
..+|++-..|.|++||..+++.+..+++|...+..++|.. ....+.+|+.||+|++||++..... ...+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4688888999999999999999999999999999999976 4668999999999999999876542 33455555 456
Q ss_pred EEEEEeCCCCcEEEEEc----CCCcEEEEECCCCce-eeEE--eccCCeeEEEEeCCC-CEEEEEECCCeEEEEECCCCE
Q 009059 352 MSLDFHPSKEDLLCSCD----NNSEIRYWSINNGSC-AGVF--KCQSGATQMRFQPRL-GRILAAAIENYISILDVETQV 423 (545)
Q Consensus 352 ~~l~~~p~~~~ll~s~s----~dg~I~lwd~~~~~~-~~~~--~~~~~v~~l~~sp~~-~~l~~~~~dg~I~i~d~~~~~ 423 (545)
.+++.+-. ..++++|. .+-.|.+||++..+. +..+ .|...|++++|+|.. +.|++|+.||.|.+||++...
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 66666544 45776664 466899999998766 4444 366789999999964 567788889999999998642
Q ss_pred E---EEEecCCCCCEEEEEEcCCC--CEEEEEeCCcEEEEEcCCCCCcceEEEE--e-------eCCCceEEEEEcCCCC
Q 009059 424 C---RLKLQGHKNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHEL--S-------CTGNKFHSCVFHPTFP 489 (545)
Q Consensus 424 ~---~~~~~~h~~~I~~l~~sp~g--~~l~s~sdg~I~vwd~~~~~~~~~i~~~--~-------~~~~~v~~~~~sp~~~ 489 (545)
. +...-.|...|.++.|..++ ++.+........+|++..+......... . .....+..+....+..
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 2 22333477889999999888 5444444889999999877421111000 0 0001111222222344
Q ss_pred EEEEEEc-CCeEEEEeCC---CCeEE----Eec-cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 490 SLLVIGC-YETLELWNMT---ENKTL----TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 490 ~l~~~~~-dg~I~iwd~~---~~~~~----~~~-~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+++++. .+...++-+. .+... .+. +|...|.++.|.-.+.++.|||+||.+.+|+
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 4555544 5555555433 33222 344 4778899999988889999999999999995
No 171
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=5.8e-19 Score=173.02 Aligned_cols=208 Identities=18% Similarity=0.310 Sum_probs=161.2
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe-ccCCccEEEEEEcC--CCCEEEEEeCCCeEEE
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVRV 331 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l-~~h~~~V~~l~~sp--~~~~l~t~s~dg~I~v 331 (545)
.-+.|.||++.|+|++|+.||.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|-| +.+++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 44678999999999999999999999999999999999888888777 58999999999998 5678999999999999
Q ss_pred EECCC---------CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee-EE----------eccC
Q 009059 332 WDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VF----------KCQS 391 (545)
Q Consensus 332 wd~~~---------~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~-~~----------~~~~ 391 (545)
+|+.. .......+..|...|..|+..|++...+.++++||+|+-+|++...... .. ..--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99985 2334566778999999999999998999999999999999998632111 11 0012
Q ss_pred CeeEEEEeCCCC-EEEEEECCCeEEEEECCC--------CE----------EEEEec-CCC--------C---CEEEEEE
Q 009059 392 GATQMRFQPRLG-RILAAAIENYISILDVET--------QV----------CRLKLQ-GHK--------N---QVHSVCW 440 (545)
Q Consensus 392 ~v~~l~~sp~~~-~l~~~~~dg~I~i~d~~~--------~~----------~~~~~~-~h~--------~---~I~~l~~ 440 (545)
...++.++|... +|++|+.|-..++||.+. +. ++..+. +|- . .++.+.|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 357889999654 567788899999999431 11 122121 121 1 2566789
Q ss_pred cCCCCEEEEEe-CCcEEEEEcCC
Q 009059 441 NTSGEYLASVS-DELVRVWSIGS 462 (545)
Q Consensus 441 sp~g~~l~s~s-dg~I~vwd~~~ 462 (545)
+|+|.-|++.- ...|+++|+..
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecC
Confidence 99997666665 55899998854
No 172
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=1.9e-18 Score=157.28 Aligned_cols=287 Identities=19% Similarity=0.250 Sum_probs=197.1
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcC-CCCEEEEEeCC-------CcEEEEEcCC---------CeEEEEe
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHD-------KKAVLWCTES---------FTVKSTL 301 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-dg~~latg~~d-------g~I~lwd~~~---------~~~~~~l 301 (545)
+.-+.+.....+...-.-+.|..|.+.|..++-+| |.+.|+++..+ ..+.||.+.. .+++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 34444444444433333467888999999999999 66677777542 3578998753 2334444
Q ss_pred c-cCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEe-----ccCcccEEEEEEeC--CCCcEEEEEcCCCcE
Q 009059 302 E-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHP--SKEDLLCSCDNNSEI 373 (545)
Q Consensus 302 ~-~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~-----~~h~~~V~~l~~~p--~~~~ll~s~s~dg~I 373 (545)
. .+-+.|.|+.|.|++..|++-. |..|.+|++.+....+..+ ..+....++-+|+| ++. .+++. .|+++
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn-qv~tt-~d~tl 195 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN-QVATT-SDSTL 195 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc-eEEEe-CCCcE
Confidence 4 4566899999999999998875 8899999998766523222 23566788899998 443 44343 48999
Q ss_pred EEEECCCCceeeEEe--ccCCeeEEEEeCCCCE-EEEEECCCeEEEEECCC-CEEEEEecCCCCCEEEEEEcCCC-CEEE
Q 009059 374 RYWSINNGSCAGVFK--CQSGATQMRFQPRLGR-ILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSG-EYLA 448 (545)
Q Consensus 374 ~lwd~~~~~~~~~~~--~~~~v~~l~~sp~~~~-l~~~~~dg~I~i~d~~~-~~~~~~~~~h~~~I~~l~~sp~g-~~l~ 448 (545)
..||+++..+...+. +...+..+.|+|+..+ |++++.||.|+|||.+. ..++..+.+|...|.++.|+|.. .+|.
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiL 275 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLIL 275 (370)
T ss_pred EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEE
Confidence 999999888777665 3345899999998766 45566799999999985 56788999999999999999964 5666
Q ss_pred EEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeC
Q 009059 449 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST 527 (545)
Q Consensus 449 s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp 527 (545)
+++ |..|.+|...+-..... +.|..+....-.......++ -+..+.+.++..|+..|.+++|+.
T Consensus 276 s~~SDs~V~Lsca~svSSE~q-------------i~~~~dese~e~~dseer~k--pL~dg~l~tydehEDSVY~~aWSs 340 (370)
T KOG1007|consen 276 SGGSDSAVNLSCASSVSSEQQ-------------IEFEDDESESEDEDSEERVK--PLQDGQLETYDEHEDSVYALAWSS 340 (370)
T ss_pred ecCCCceeEEEeccccccccc-------------cccccccccCcchhhHHhcc--cccccccccccccccceEEEeecc
Confidence 666 88999998655322111 11111110000000000111 234455557778999999999987
Q ss_pred CCC-EEEEEeCCCcEEE
Q 009059 528 VNG-MVASASHDKCVKI 543 (545)
Q Consensus 528 d~~-~las~s~Dg~I~i 543 (545)
-.. ++|+-++||++.|
T Consensus 341 adPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 341 ADPWIFASLSYDGRVII 357 (370)
T ss_pred CCCeeEEEeccCceEEe
Confidence 665 6788999999876
No 173
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=2.5e-20 Score=190.37 Aligned_cols=273 Identities=18% Similarity=0.291 Sum_probs=215.7
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
.++.+.+|...|+|+.|...|.++++|+.|..|+||..++..++..+.+|.+.|+.++.+.+..++++++.|..|++|.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee------EEeccCCeeEEEEeCCCCEEEEE
Q 009059 335 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG------VFKCQSGATQMRFQPRLGRILAA 408 (545)
Q Consensus 335 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~------~~~~~~~v~~l~~sp~~~~l~~~ 408 (545)
..+. ++..+.+|++.|++|+|+|-. +.+.||++++||.+ ...+. .+.....+..+.|...+..++++
T Consensus 262 ~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 262 PDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred CCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccc
Confidence 9866 588999999999999999863 67789999999988 22111 11222346677777788889999
Q ss_pred ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcC
Q 009059 409 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 486 (545)
Q Consensus 409 ~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp 486 (545)
+.|+.-..|...... .+...+.-+.++.+- .+.+++- +-.+++|++.++ ...+.+.+|...+..+.+||
T Consensus 335 s~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred cCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeeecC
Confidence 999888777654321 122222222222222 3444444 778999999888 66777888999999999999
Q ss_pred CCCE-EEEEEcCCeEEEEeCCCCeEE--EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 487 TFPS-LLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 487 ~~~~-l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
-... ...++.||.+.|||+-.+..+ ...+| ..+..-+||+||..++....-|.+.|.
T Consensus 406 fn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 406 FNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred CCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEe
Confidence 7754 457788999999999988777 33454 456667899999888887777777764
No 174
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1e-17 Score=175.46 Aligned_cols=279 Identities=16% Similarity=0.229 Sum_probs=208.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccC---CccEEEEEEcC--CCCEEEEEeCCCeEEEEECCCC
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRFSP--SLSRLATSSADRTVRVWDTENP 337 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h---~~~V~~l~~sp--~~~~l~t~s~dg~I~vwd~~~~ 337 (545)
...-..+.|+|-...++++...-.|+|||.+.++....|..+ ...|+.+.+-. |..++++|+.||.|+||+--..
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 334567889998888999887789999999999998877654 45688998865 5668999999999999974322
Q ss_pred C----eeeeEecc-------CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC--CeeEEEEeC-CCC
Q 009059 338 D----YSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQP-RLG 403 (545)
Q Consensus 338 ~----~~~~~~~~-------h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~--~v~~l~~sp-~~~ 403 (545)
. ..+..+.+ ..+.-.-++|......|+++|+ -..|+|||.....++..+.... .++.+.-+- .|+
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 1 11222221 1122245677777777776654 7899999999888877766443 356665443 468
Q ss_pred EEEEEECCCeEEEEECCCC---EEEEEecCCCCC--EEEEEEcCCCCE-EEEEe-CCcEEEEEcCCCCCcceEEEEeeC-
Q 009059 404 RILAAAIENYISILDVETQ---VCRLKLQGHKNQ--VHSVCWNTSGEY-LASVS-DELVRVWSIGSGSKGECIHELSCT- 475 (545)
Q Consensus 404 ~l~~~~~dg~I~i~d~~~~---~~~~~~~~h~~~--I~~l~~sp~g~~-l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~- 475 (545)
.+++|..||.|++||.+.. ..+...+.|... |..+.+.+.|-- |++|+ ||.|++||++.... ....++..|
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ETFLTIVAHW 1301 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cccceeeecc
Confidence 8999999999999999864 346677778887 999999887644 88888 99999999998532 222233322
Q ss_pred --CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEecc-------CCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 476 --GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 476 --~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~-------h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
+...+++..|++...+++|+. +.|+||++.......+.. ..+.+.+++|+|..-+||+|+.|.+|.||
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 335999999999998888888 999999998766553332 23568999999999999999999999998
No 175
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=8.4e-20 Score=176.81 Aligned_cols=292 Identities=20% Similarity=0.313 Sum_probs=228.1
Q ss_pred eEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe-ccCCccEEEEEEcC--CCCEEEEEeCCCeE
Q 009059 253 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTV 329 (545)
Q Consensus 253 ~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l-~~h~~~V~~l~~sp--~~~~l~t~s~dg~I 329 (545)
+.....|..|.+.|..+.|...|..|++|+.|..|.+||...++.+..+ .+|...|..-.|-| +..-+++++.||.|
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 3445678899999999999999999999999999999999988887766 57999999999988 45679999999999
Q ss_pred EEEECCCCCee--eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc----C---CeeEEEEeC
Q 009059 330 RVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----S---GATQMRFQP 400 (545)
Q Consensus 330 ~vwd~~~~~~~--~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~----~---~v~~l~~sp 400 (545)
++=.+...++. ...+..|.++|..++.-|+..+-|.+++.|+.+.-+|++.+.....+... . ....++..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 99877654432 34566799999999999999999999999999999999987655444321 1 356788888
Q ss_pred CCC-EEEEEECCCeEEEEECCCCEE------EEEecC------CCCCEEEEEEcCCC-CEEEEEeCCcEEEEEcCCCCC-
Q 009059 401 RLG-RILAAAIENYISILDVETQVC------RLKLQG------HKNQVHSVCWNTSG-EYLASVSDELVRVWSIGSGSK- 465 (545)
Q Consensus 401 ~~~-~l~~~~~dg~I~i~d~~~~~~------~~~~~~------h~~~I~~l~~sp~g-~~l~s~sdg~I~vwd~~~~~~- 465 (545)
... .+++++.|-.+++||.+.-.. +..+.. ..-.|+|++|+.++ .+|++-.|-.|++|.-..+.-
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 655 678888999999999875321 233322 23479999999665 566666688999995432211
Q ss_pred --------cceEEE-EeeCCCc--eEEEE-EcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEE
Q 009059 466 --------GECIHE-LSCTGNK--FHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMV 532 (545)
Q Consensus 466 --------~~~i~~-~~~~~~~--v~~~~-~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~l 532 (545)
...+.. +++|.+. |..+- |-|...|+++|+.-|.|.||+-++++.+ .+.+....|+||.=+|--.+|
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvL 451 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVL 451 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchh
Confidence 012222 5666543 55554 5788899999999999999999999988 445555599999999999999
Q ss_pred EEEeCCCcEEEc
Q 009059 533 ASASHDKCVKIW 544 (545)
Q Consensus 533 as~s~Dg~I~iW 544 (545)
|+.|-|..||||
T Consensus 452 AsSGid~DVKIW 463 (559)
T KOG1334|consen 452 ASSGIDHDVKIW 463 (559)
T ss_pred hccCCccceeee
Confidence 999999999999
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=2.9e-18 Score=162.13 Aligned_cols=228 Identities=19% Similarity=0.317 Sum_probs=174.0
Q ss_pred EEEEeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC-------eEEEEeccCCccEEEEEEcCC-CCEEEEEe
Q 009059 254 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPS-LSRLATSS 324 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~-------~~~~~l~~h~~~V~~l~~sp~-~~~l~t~s 324 (545)
...-.+.||+++|..++|+| +...||+|+.|.+|.||.+... +++..+.+|...|--|+|+|. .+.|++++
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 34556789999999999999 5668999999999999998643 456788999999999999994 56899999
Q ss_pred CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC--eeEEEEeCCC
Q 009059 325 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRL 402 (545)
Q Consensus 325 ~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~--v~~l~~sp~~ 402 (545)
.|.+|.+|++.++.. +.++. |.+.|+++.|+.+|. ++++.+.|..|+|||.++++.+..-..+.+ ...+.|..++
T Consensus 152 ~Dn~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g 228 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG 228 (472)
T ss_pred CCceEEEEeccCCce-eeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccC
Confidence 999999999999886 55555 999999999999975 566888999999999999999887754443 4567788887
Q ss_pred CEEEEEE----CCCeEEEEECCCCEE---EEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCC-cceEEEE
Q 009059 403 GRILAAA----IENYISILDVETQVC---RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK-GECIHEL 472 (545)
Q Consensus 403 ~~l~~~~----~dg~I~i~d~~~~~~---~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~-~~~i~~~ 472 (545)
. +++.+ ++..+.+||..+.+. ...+. ....|.---|.++..+|+.++ |+.|+.|.+..... ...+.++
T Consensus 229 ~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f 306 (472)
T KOG0303|consen 229 K-IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTF 306 (472)
T ss_pred c-eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccc
Confidence 7 55544 367899999876432 33333 345666667888888887777 88999999987532 1122222
Q ss_pred eeCCCceEEEEEcCC
Q 009059 473 SCTGNKFHSCVFHPT 487 (545)
Q Consensus 473 ~~~~~~v~~~~~sp~ 487 (545)
. ...+-..+.|-|.
T Consensus 307 ~-S~epQRG~g~mPK 320 (472)
T KOG0303|consen 307 S-SKEPQRGMGFMPK 320 (472)
T ss_pred c-cCCcccccccccc
Confidence 2 2334455555554
No 177
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=3.4e-18 Score=158.26 Aligned_cols=242 Identities=19% Similarity=0.281 Sum_probs=184.0
Q ss_pred CCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q 009059 261 ASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 261 ~H~~~V~~l~~spd----g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~-~~~l~t~s~dg~I~vwd~~ 335 (545)
.|....+.|+|+-| ..+||.||.-|.|+|.|+.+++....+.+|...|+.|.|.|+ .+++++++.|..|++|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 36777888998774 347999999999999999999999999999999999999996 4689999999999999999
Q ss_pred CCCeeeeE---eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe------------------------
Q 009059 336 NPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------------------------ 388 (545)
Q Consensus 336 ~~~~~~~~---~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~------------------------ 388 (545)
+..+ +.. +.+|.+.|.+++|++++. .+++|+.|..|++|++...+....++
T Consensus 167 ~~~C-v~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 TDVC-VAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred CCeE-EEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 8764 554 457999999999999987 55599999999999998433211110
Q ss_pred -----ccCCeeEEEEeCCCCEEEEEECCCeEEEEECC-CCE-------------EEEEecCCCCCEEEEE--EcCCCCEE
Q 009059 389 -----CQSGATQMRFQPRLGRILAAAIENYISILDVE-TQV-------------CRLKLQGHKNQVHSVC--WNTSGEYL 447 (545)
Q Consensus 389 -----~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~-~~~-------------~~~~~~~h~~~I~~l~--~sp~g~~l 447 (545)
|...|.|+.|- |+++++-+.++.|..|... -++ .+..+.-....|.-+. |.|-++.|
T Consensus 245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 11113333333 3677888889999999872 111 1223333444555554 56678899
Q ss_pred EEEe-CCcEEEEEcCCCCCcce-EEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 448 ASVS-DELVRVWSIGSGSKGEC-IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 448 ~s~s-dg~I~vwd~~~~~~~~~-i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
|.|. .|.|.+||++......+ ..........|...+|+.++..|+....|+.|.-||.-
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999 88999999998755322 22223345779999999999999999999999999853
No 178
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6.1e-17 Score=144.12 Aligned_cols=268 Identities=15% Similarity=0.179 Sum_probs=194.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCC---------C-eEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTES---------F-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~---------~-~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
.|.+-+|+|.+++|+.|..+|.|.+..+.+ + ..+...++|.++|+.++|.. .+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence 366778999999999999999999998753 2 33455689999999999983 4677764 699999987
Q ss_pred CCCCeee-------eEeccC-----cccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC-eeEEEEeCC
Q 009059 335 ENPDYSL-------RTFTGH-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPR 401 (545)
Q Consensus 335 ~~~~~~~-------~~~~~h-----~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~-v~~l~~sp~ 401 (545)
....... .....| --.|+++-..|..+.++..| .|+.++-||+++|+..++++.+.. +.++.--..
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 6432211 011112 24688999999887777555 699999999999999999986655 677777566
Q ss_pred CCEEEEEECCCeEEEEECCCCEEEEEecCCC----------CCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEE
Q 009059 402 LGRILAAAIENYISILDVETQVCRLKLQGHK----------NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 402 ~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~----------~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~ 471 (545)
...+++|+.||++++||.++++++..+...+ ..|.+++ -+..++++|+...+.+|.++.. ++...
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrss---e~t~v 242 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSS---ESTCV 242 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCC---CceEE
Confidence 6889999999999999999999888775421 2455555 4567898888889999999987 44444
Q ss_pred EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCC-CEEEEEeCCCcEEEc
Q 009059 472 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCVKIW 544 (545)
Q Consensus 472 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~-~~las~s~Dg~I~iW 544 (545)
+. -...+..+.|..+. +++++..+.|.-|.+..--...........++..|+..- ++|-.++....+.|+
T Consensus 243 fp-ipa~v~~v~F~~d~--vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 243 FP-IPARVHLVDFVDDC--VLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred Ee-cccceeEeeeecce--EEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 43 35667888887654 777777778988887654333443333344555554332 456666777777765
No 179
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=4e-17 Score=148.80 Aligned_cols=240 Identities=19% Similarity=0.332 Sum_probs=177.6
Q ss_pred cCCCCCeEEEEEcCCC-----CEEEEEeCCCcEEEEEcCC--CeE--EEEe-----ccCCccEEEEEEcC-CCCEEEEEe
Q 009059 260 PASTSKVESCHFSPDG-----KLLATGGHDKKAVLWCTES--FTV--KSTL-----EEHTQWITDVRFSP-SLSRLATSS 324 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg-----~~latg~~dg~I~lwd~~~--~~~--~~~l-----~~h~~~V~~l~~sp-~~~~l~t~s 324 (545)
..|.-+++.+-|.|+. ++|||++ ..++||.+.. .+. ...+ ..+..++++..|+. +-++|.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 4688999999999976 3677765 4899998863 221 1112 34678899999987 678999999
Q ss_pred CCCeEEEEECCCCC--eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeE-Eec---cCCeeEEEE
Q 009059 325 ADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKC---QSGATQMRF 398 (545)
Q Consensus 325 ~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~-~~~---~~~v~~l~~ 398 (545)
-|-++.|||++++. .....+..|..+|..++|...+..+|++++.||.||+||++..+--.. ++. ..+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999999852 235677889999999999998899999999999999999987543322 222 334677888
Q ss_pred eCCCCE-EEEEEC-CCeEEEEECCCC-EEEEEecCCCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCC---cceEE
Q 009059 399 QPRLGR-ILAAAI-ENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSK---GECIH 470 (545)
Q Consensus 399 sp~~~~-l~~~~~-dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~---~~~i~ 470 (545)
++.... +++... ...|.|.|++.. .++..+.+|.+.|+.|+|.|.. ..|++++ |..+.+||+..... ...+.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 875544 444444 468999999974 6788999999999999999965 6788888 66999999976422 11222
Q ss_pred EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE
Q 009059 471 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 502 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i 502 (545)
.+. .+..|+.+.|++...--++...++.+.+
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~kklei 361 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICFGKKLEI 361 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEecCeeeE
Confidence 233 5678999999975543344444444444
No 180
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.6e-18 Score=170.96 Aligned_cols=236 Identities=19% Similarity=0.211 Sum_probs=177.7
Q ss_pred cccceeeeeec-----CCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC----------CeEEEEe
Q 009059 237 PRDRVGRSAEV-----GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----------FTVKSTL 301 (545)
Q Consensus 237 ~~d~~~~~~~~-----~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~----------~~~~~~l 301 (545)
..+.++++|.+ .....+..+-+|++|.++|.|+++.++++.+++|+.||+|+.|++.. ......+
T Consensus 313 sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l 392 (577)
T KOG0642|consen 313 SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTL 392 (577)
T ss_pred ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccce
Confidence 34667777776 33467888999999999999999999999999999999999996541 1334567
Q ss_pred ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC
Q 009059 302 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 381 (545)
Q Consensus 302 ~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~ 381 (545)
.||.+.|+.++++.....|++++.||++++|+......+........+...++++-.....+.++...-+.--++++...
T Consensus 393 ~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~ 472 (577)
T KOG0642|consen 393 LGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV 472 (577)
T ss_pred eccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhh
Confidence 89999999999999989999999999999999876543112112222345566665433222223222333334444444
Q ss_pred ceeeEEecc--------CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-C
Q 009059 382 SCAGVFKCQ--------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 452 (545)
Q Consensus 382 ~~~~~~~~~--------~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-d 452 (545)
..+..+... ..+..+.++|.....+.+..++.|+++|..++..++....|...++++++.|+|-+|++++ |
T Consensus 473 s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d 552 (577)
T KOG0642|consen 473 SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHD 552 (577)
T ss_pred hheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCC
Confidence 444444321 2367788999999999999999999999999999999999999999999999999999999 9
Q ss_pred CcEEEEEcCCCCCcceEEEEeeC
Q 009059 453 ELVRVWSIGSGSKGECIHELSCT 475 (545)
Q Consensus 453 g~I~vwd~~~~~~~~~i~~~~~~ 475 (545)
+.+++|.+... .|+.....|
T Consensus 553 ~sv~l~kld~k---~~~~es~~~ 572 (577)
T KOG0642|consen 553 GSVRLWKLDVK---TCVLESTAH 572 (577)
T ss_pred ceeehhhccch---heeeccccc
Confidence 99999998665 565555444
No 181
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1e-16 Score=147.41 Aligned_cols=255 Identities=20% Similarity=0.361 Sum_probs=185.4
Q ss_pred CceecccccCCccccccCCCCCCcccceeeeee-cCCceeeEEEEeecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEE
Q 009059 214 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE-VGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLW 290 (545)
Q Consensus 214 ~~~~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~-~~~~~~~~~~~~l~~H~~~V~~l~~sp--dg~~latg~~dg~I~lw 290 (545)
..++.+.++|..-+... ..+.|..+++|| ......+..-...+.|.+.|..+.|.+ -|+.+|+++.|+++.||
T Consensus 13 ~DlihdVs~D~~GRRmA----tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 13 KDLIHDVSFDFYGRRMA----TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cceeeeeeecccCceee----eccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 34444555543333222 334567788888 444467778888999999999999976 68999999999999999
Q ss_pred EcC---------CCeEEEEeccCCccEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeee-------------Eecc
Q 009059 291 CTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLR-------------TFTG 346 (545)
Q Consensus 291 d~~---------~~~~~~~l~~h~~~V~~l~~sp~--~~~l~t~s~dg~I~vwd~~~~~~~~~-------------~~~~ 346 (545)
.-. ......++......|++|.|.|. |-.||+++.||++|||+..+... +. ....
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n-Ls~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN-LSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc-cccchhhhhhhhccCCccc
Confidence 751 12344567778889999999994 77899999999999999865432 11 1124
Q ss_pred CcccEEEEEEeCCC--CcEEEEEcCC-----CcEEEEECCCC--ceeeE--E-eccCCeeEEEEeCCCC----EEEEEEC
Q 009059 347 HSTTVMSLDFHPSK--EDLLCSCDNN-----SEIRYWSINNG--SCAGV--F-KCQSGATQMRFQPRLG----RILAAAI 410 (545)
Q Consensus 347 h~~~V~~l~~~p~~--~~ll~s~s~d-----g~I~lwd~~~~--~~~~~--~-~~~~~v~~l~~sp~~~----~l~~~~~ 410 (545)
+..+..|+.|+|.. ..+|+.|+.+ +.++||..... +.... + .+..+|+.++|.|+-+ .|++++.
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 66788899998752 4467677654 37888876543 22222 2 3456799999999744 4777888
Q ss_pred CCeEEEEECCCC--------------------EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceE
Q 009059 411 ENYISILDVETQ--------------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 469 (545)
Q Consensus 411 dg~I~i~d~~~~--------------------~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i 469 (545)
|| |+||.++.. +.+..+.+|.+.|..+.|+-.|..|++.+ ||.|++|...-.....|.
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~ 326 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCT 326 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheee
Confidence 99 999998731 23445778999999999999999999988 999999987666555666
Q ss_pred EEEee
Q 009059 470 HELSC 474 (545)
Q Consensus 470 ~~~~~ 474 (545)
..++.
T Consensus 327 sv~~~ 331 (361)
T KOG2445|consen 327 SVLKA 331 (361)
T ss_pred eEEec
Confidence 66554
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=6e-17 Score=167.65 Aligned_cols=258 Identities=18% Similarity=0.235 Sum_probs=187.9
Q ss_pred CcEEEEEcCCC-eEEEEeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeee-----eEeccCcccEEEEEEe
Q 009059 285 KKAVLWCTESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSL-----RTFTGHSTTVMSLDFH 357 (545)
Q Consensus 285 g~I~lwd~~~~-~~~~~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~~~~-----~~~~~h~~~V~~l~~~ 357 (545)
+.+.||+++.. .+...+. -...|+|++|+| +..+|+.|..+|.|.+||+....... .....|..+|+.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999865 3344443 567899999999 56788889999999999998765421 2334688999999997
Q ss_pred CCCCc-EEEEEcCCCcEEEEECCCCce-e-----eEE-------eccCCeeEEEEeCC-CCEEEEEECCCeEEEEECCCC
Q 009059 358 PSKED-LLCSCDNNSEIRYWSINNGSC-A-----GVF-------KCQSGATQMRFQPR-LGRILAAAIENYISILDVETQ 422 (545)
Q Consensus 358 p~~~~-ll~s~s~dg~I~lwd~~~~~~-~-----~~~-------~~~~~v~~l~~sp~-~~~l~~~~~dg~I~i~d~~~~ 422 (545)
.+... =+++++.||.|..|+++.-.. . ... .....++.+.|.+. -..+++|+.+|.|+.-+....
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 65433 244888899999998875332 1 111 12235788999884 456888888999888443322
Q ss_pred ---E-----EEEEecCCCCCEEEEEEcCCCC-EEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE-EE
Q 009059 423 ---V-----CRLKLQGHKNQVHSVCWNTSGE-YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS-LL 492 (545)
Q Consensus 423 ---~-----~~~~~~~h~~~I~~l~~sp~g~-~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~-l~ 492 (545)
. ....+..|.++|+++.++|-+. ++.+++|.+++||...... ..+..+..+...+++++|||.... ++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~--~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA--SPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC--CcchhhhhccceeeeeEEcCcCceEEE
Confidence 1 1234556889999999999775 4445559999999976221 455566667777999999998865 55
Q ss_pred EEEcCCeEEEEeCCCCeEE---EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 493 VIGCYETLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 493 ~~~~dg~I~iwd~~~~~~~---~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++..+|.|.+||+...... ....+....+.+.|++.|+.|++|+..|.+++|+
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 5666999999999655433 3334466777888999999999999999999985
No 183
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.2e-17 Score=155.54 Aligned_cols=265 Identities=17% Similarity=0.197 Sum_probs=193.6
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCeEEEEe--ccCC-ccEEEEEE
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTL--EEHT-QWITDVRF 313 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp--dg~~latg~~dg~I~lwd~~~~~~~~~l--~~h~-~~V~~l~~ 313 (545)
...+|++++.+|..+++ +++|...+..+.|.. .+..+.+|+.||+|++||++.......+ ..|. .+..|++.
T Consensus 49 ngsv~lyd~~tg~~l~~---fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~ 125 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEE---FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDL 125 (376)
T ss_pred CCeEEEEeccchhhhhe---ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeec
Confidence 45689999999876555 556666677777766 4668999999999999999986655443 4555 56777877
Q ss_pred cCCCCEEEEEeC----CCeEEEEECCCCCeeee-EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC----cee
Q 009059 314 SPSLSRLATSSA----DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCA 384 (545)
Q Consensus 314 sp~~~~l~t~s~----dg~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~----~~~ 384 (545)
..++..+++|.. |-.|.+||++..+..+. ....|.+.|+++.|+|....+|++|+.||.|.+||++.. ..+
T Consensus 126 nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~ 205 (376)
T KOG1188|consen 126 NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL 205 (376)
T ss_pred cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHH
Confidence 777888888854 67899999998776444 455799999999999999999999999999999999754 245
Q ss_pred eEEeccCCeeEEEEeCCC-CEEEEEECCCeEEEEECCCCEEEEEecCCC------------CCEEEEEEcCCCCEEEE-E
Q 009059 385 GVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHK------------NQVHSVCWNTSGEYLAS-V 450 (545)
Q Consensus 385 ~~~~~~~~v~~l~~sp~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~------------~~I~~l~~sp~g~~l~s-~ 450 (545)
.++.+...|.++.|..++ +++++-+......+|+++.+.+...+.... ..+.......+..+++. +
T Consensus 206 ~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g 285 (376)
T KOG1188|consen 206 HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAG 285 (376)
T ss_pred HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEec
Confidence 566777789999999874 469999999999999999887655443221 11111111123333333 3
Q ss_pred e-CCcEEEEEc---CCCCCcceEEEEee-CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 451 S-DELVRVWSI---GSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 451 s-dg~I~vwd~---~~~~~~~~i~~~~~-~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
. -+...++-+ .++.....+..+.+ |..-|+++.|...+..+++||.||.+.+|...
T Consensus 286 ~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 286 TDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 3 445555443 33433444555555 55668889999999999999999999999853
No 184
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=4.2e-17 Score=150.70 Aligned_cols=233 Identities=17% Similarity=0.293 Sum_probs=174.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee-----------eeEec-cCcccEEEEEEe-------CCCCcEEEEEc
Q 009059 308 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-----------LRTFT-GHSTTVMSLDFH-------PSKEDLLCSCD 368 (545)
Q Consensus 308 V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~-----------~~~~~-~h~~~V~~l~~~-------p~~~~ll~s~s 368 (545)
...+.|+|||..|++-+.|..+++|++...... ...+. .....|+..+|. |+ ..++++.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~-t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS-TNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc-cceeeecc
Confidence 456899999999999999999999998632110 00111 123567788885 44 56788899
Q ss_pred CCCcEEEEECCCCceeeEEecc------CCeeEEEEeCCCCEEEEEECCCeEEEEEC-CCCEE--EEEe-----cCCCCC
Q 009059 369 NNSEIRYWSINNGSCAGVFKCQ------SGATQMRFQPRLGRILAAAIENYISILDV-ETQVC--RLKL-----QGHKNQ 434 (545)
Q Consensus 369 ~dg~I~lwd~~~~~~~~~~~~~------~~v~~l~~sp~~~~l~~~~~dg~I~i~d~-~~~~~--~~~~-----~~h~~~ 434 (545)
.+.-|++||.-+|+....+..- ....+++|+|+|.+|++| ....|++||+ +.|.. +... .+..+-
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 9999999999999887766532 236789999998877665 5689999999 55432 1111 123667
Q ss_pred EEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEE
Q 009059 435 VHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTL 511 (545)
Q Consensus 435 I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~ 511 (545)
|.|++|+|.. ..+++++ ...+-||.-... ..+..+-+|.+.|+.+.|.++|+.|++|+.. ..|..||++..+..
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~---~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR---RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCC---CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 8999999966 4888888 567777766554 6677777999999999999999999999874 49999999876544
Q ss_pred --EeccCCC-CeeE--EEEeCCCCEEEEEeCCCcEEEcC
Q 009059 512 --TLSAHDK-LVSS--LAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 512 --~~~~h~~-~V~~--l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+..|.. .-.. ....|++++|++|+.||.|++||
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwd 325 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWD 325 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEe
Confidence 5666654 2223 45568899999999999999997
No 185
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.77 E-value=7.4e-17 Score=171.64 Aligned_cols=289 Identities=18% Similarity=0.218 Sum_probs=207.1
Q ss_pred EEEEeecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCC-------CeEEEEeccCCccEEEEEEcCCCCEEEEEeC
Q 009059 254 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSA 325 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg-~~latg~~dg~I~lwd~~~-------~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~ 325 (545)
..+..+..|...|..++.+++. .++++|+.||+|++|+... .+...++.-....+.++.+.+.+..+|+++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 3577888999999999988855 8999999999999999853 1223334445678999999999999999999
Q ss_pred CCeEEEEECCCCCee------eeEeccC-cccE-EEEEEeCCCCc-EEEEEcCCCcEEEEECCCCceeeEEec---cCCe
Q 009059 326 DRTVRVWDTENPDYS------LRTFTGH-STTV-MSLDFHPSKED-LLCSCDNNSEIRYWSINNGSCAGVFKC---QSGA 393 (545)
Q Consensus 326 dg~I~vwd~~~~~~~------~~~~~~h-~~~V-~~l~~~p~~~~-ll~s~s~dg~I~lwd~~~~~~~~~~~~---~~~v 393 (545)
||.|++.+++..... .+....+ .+.+ ...+|...... +++.+...+.|..||++.......++. ++-|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 999999998752111 1111112 2233 33344333333 666777788999999998776665543 4569
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec-CCCCCEEEEEEcCC---CCEEEEEe---CCcEEEEEcCCCCCc
Q 009059 394 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTS---GEYLASVS---DELVRVWSIGSGSKG 466 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~I~~l~~sp~---g~~l~s~s---dg~I~vwd~~~~~~~ 466 (545)
++++.+|.+.+++.|+..|.+.+||++-+.++..+. ++..+|..++.+|- ..+.++++ .+.|.+|++.++.
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~-- 1276 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL-- 1276 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc--
Confidence 999999999999999999999999999988887665 24567888877663 24555544 4589999998873
Q ss_pred ceEEEEeeC-------------------CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE----------------
Q 009059 467 ECIHELSCT-------------------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---------------- 511 (545)
Q Consensus 467 ~~i~~~~~~-------------------~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~---------------- 511 (545)
+-..+... .-....+.+...+.++++|+.|..|+.||....+..
T Consensus 1277 -~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~ 1355 (1431)
T KOG1240|consen 1277 -RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSE 1355 (1431)
T ss_pred -ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccch
Confidence 22222211 112334555556678999999999999997432110
Q ss_pred -----------------------------------------EeccCCCCeeEEEEeCCC-CEEEEEeCCCcEEEcC
Q 009059 512 -----------------------------------------TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 545 (545)
Q Consensus 512 -----------------------------------------~~~~h~~~V~~l~~spd~-~~las~s~Dg~I~iWd 545 (545)
.-..|..+|++|++.... .+|++++.||.|+||+
T Consensus 1356 s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1356 SYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 011366778888876544 5899999999999996
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.6e-16 Score=141.52 Aligned_cols=226 Identities=19% Similarity=0.215 Sum_probs=167.1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEE
Q 009059 307 WITDVRFSPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 377 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~---------~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd 377 (545)
.|..-+|+|.+++|++|..+|.|.++.+.+ ++..+..+.+|.++|+.++|+. .++++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEee
Confidence 355668999999999999999999998863 2334566789999999999993 3554776 69999998
Q ss_pred CCCCce------eeEEe--------ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCC
Q 009059 378 INNGSC------AGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 443 (545)
Q Consensus 378 ~~~~~~------~~~~~--------~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~ 443 (545)
.+.... +.... .-..|+.+-..|..+.++.++.|+.++.||+++|+....+++|.+.|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 764322 11111 1124788999999899999999999999999999999999999999999998444
Q ss_pred CCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC----------CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEE
Q 009059 444 GEYLASVS-DELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 512 (545)
Q Consensus 444 g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~----------~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~ 512 (545)
...+.+|+ ||++|+||+++. +++..+... ...|.+++. +..+|++|+ ...+.+|.++..++..
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~---k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~ 241 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQ---KHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTC 241 (325)
T ss_pred CcceeecCCCccEEEEecccc---ceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceE
Confidence 44555666 999999999998 444443321 223444443 455555554 4579999999999887
Q ss_pred eccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 513 LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 513 ~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
.....+++..+.|.. ..+++++..+.|.-|
T Consensus 242 vfpipa~v~~v~F~~--d~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 242 VFPIPARVHLVDFVD--DCVLIGGEGNHVQSY 271 (325)
T ss_pred EEecccceeEeeeec--ceEEEeccccceeee
Confidence 777778888888863 456677655555544
No 187
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3e-16 Score=162.64 Aligned_cols=282 Identities=17% Similarity=0.279 Sum_probs=210.8
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC--C--eEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 260 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--F--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~--~--~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
..|.-.++|.++||+++++|+|..||.|.+|.--. . .....+.=|...|++++|+++|.+|++|+..|.+.+|.+.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 35777799999999999999999999999996322 1 2235566688999999999999999999999999999999
Q ss_pred CCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec------------cCCeeEEEEeCCCC
Q 009059 336 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLG 403 (545)
Q Consensus 336 ~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~------------~~~v~~l~~sp~~~ 403 (545)
+++ .+.+..-.++|..+.++|+++.+. ....|..|.+....+.+....+.+ .+-.+.++++|.-+
T Consensus 282 T~~--kqfLPRLgs~I~~i~vS~ds~~~s-l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 282 TGK--KQFLPRLGSPILHIVVSPDSDLYS-LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred CCC--cccccccCCeeEEEEEcCCCCeEE-EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 877 466677788999999999986555 555599999988765544433322 12256789999878
Q ss_pred EEEEEECCCeEEEEECCCCEEEEEecC-----CC------CCEEEEEEcCCCCEEEEEe---------CC--cEEEEEcC
Q 009059 404 RILAAAIENYISILDVETQVCRLKLQG-----HK------NQVHSVCWNTSGEYLASVS---------DE--LVRVWSIG 461 (545)
Q Consensus 404 ~l~~~~~dg~I~i~d~~~~~~~~~~~~-----h~------~~I~~l~~sp~g~~l~s~s---------dg--~I~vwd~~ 461 (545)
.++..+..|.|.+||+-+.+.+..+.. +. -.++.++.+-.|.++++.. || .+++|-..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 899999999999999988766655431 22 2567778888899998864 33 68899876
Q ss_pred CCCCcceEE--EEeeCCCceEEEEEcC-CCC-EEEEEEcCCeEEEEeCCCCe----------EE-EeccCCCCeeEEEEe
Q 009059 462 SGSKGECIH--ELSCTGNKFHSCVFHP-TFP-SLLVIGCYETLELWNMTENK----------TL-TLSAHDKLVSSLAAS 526 (545)
Q Consensus 462 ~~~~~~~i~--~~~~~~~~v~~~~~sp-~~~-~l~~~~~dg~I~iwd~~~~~----------~~-~~~~h~~~V~~l~~s 526 (545)
.......+. ....|+..+...++.+ ... .+++++.||.++||-+...+ +. .-..|..++++++|+
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs 518 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS 518 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence 654323322 2345666665555543 333 68999999999999873322 22 112478999999999
Q ss_pred CCCCEEEEEeCCCcEEEcC
Q 009059 527 TVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 527 pd~~~las~s~Dg~I~iWd 545 (545)
.||.+ ++.+.|++|.|||
T Consensus 519 ~dGsl-la~s~~~~Itiwd 536 (792)
T KOG1963|consen 519 QDGSL-LAVSFDDTITIWD 536 (792)
T ss_pred CCCcE-EEEecCCEEEEec
Confidence 99954 5566788999997
No 188
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.77 E-value=4.9e-17 Score=168.31 Aligned_cols=264 Identities=17% Similarity=0.200 Sum_probs=197.8
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeE--EEE----eccCCccEEEEEE
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KST----LEEHTQWITDVRF 313 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~~~--~~~----l~~h~~~V~~l~~ 313 (545)
..-+|+........ ..+ .-...|+|++|+| +..+||.|.++|.|.+||+..+.. ... ...|..+|+.+.|
T Consensus 223 ~~~vW~~~~p~~Pe--~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPE--LVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred eEEEEecCCCCCce--EEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 56778776652222 122 2356799999999 677888999999999999987665 222 2468999999999
Q ss_pred cCCC--CEEEEEeCCCeEEEEECCCCCeeeeE-----ec------cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 314 SPSL--SRLATSSADRTVRVWDTENPDYSLRT-----FT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 314 sp~~--~~l~t~s~dg~I~vwd~~~~~~~~~~-----~~------~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
..+. .-|++++.||.|..|+++.-..+... .. .-...+++++|.+.....++.|+++|.|..-+...
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 7643 45999999999999988753332211 11 12346899999998888899999999998744332
Q ss_pred Cce--------e-eEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECC-CCEEEEEecCCCCCEEEEEEcCCCC-EEEE
Q 009059 381 GSC--------A-GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGE-YLAS 449 (545)
Q Consensus 381 ~~~--------~-~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~h~~~I~~l~~sp~g~-~l~s 449 (545)
.+. . ....+.+.+..+.++|-+..++..+.|.+++||... ...++..+..+...|++++|||... .+++
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 211 1 122355779999999988887777779999999998 7778888888888899999999874 4555
Q ss_pred Ee-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 450 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 450 ~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
+. ||.|.+||+..... ..+............+.|++.++.|++|...|++++|++...
T Consensus 460 ~d~~G~l~iWDLl~~~~-~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDE-EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred EcCCCceehhhhhcccc-CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 55 89999999987544 344444444666777888999999999999999999999653
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=2.7e-15 Score=141.39 Aligned_cols=232 Identities=17% Similarity=0.252 Sum_probs=175.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCCeee
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSL 341 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d--g~I~vwd~~~~~~~~ 341 (545)
..+..+.|..|...|..|+.|| .++|+.+..............|..+-|+. .++|..+.+ +.++++++..... +
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~-I 81 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT-I 81 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce-E
Confidence 4567778999999999998886 57888776555333333344566666764 466665554 3589999886554 4
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc----CCeeEEEEeCCCCEEEEEE--CCCeEE
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----SGATQMRFQPRLGRILAAA--IENYIS 415 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~----~~v~~l~~sp~~~~l~~~~--~dg~I~ 415 (545)
..+. ...+|.++.++.+ .++ ++- ...|+|||+++.+.+.++... .++..+.+++.+.+++.-+ ..|.|.
T Consensus 82 Ce~~-fpt~IL~VrmNr~--RLv-V~L-ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNRK--RLV-VCL-EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred EEEe-cCCceEEEEEccc--eEE-EEE-cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 4333 3467999999854 444 444 344999999999999887643 3355566666666777644 379999
Q ss_pred EEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CC-cEEEEEcCCCCCcceEEEEeeC--CCceEEEEEcCCCCEE
Q 009059 416 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSL 491 (545)
Q Consensus 416 i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg-~I~vwd~~~~~~~~~i~~~~~~--~~~v~~~~~sp~~~~l 491 (545)
+||+.+.+.+..+..|++.+-+++|+++|.+||+++ .| .||||.+.++ ..+.++... ...|.+++|+|++.+|
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 999999999999999999999999999999999999 55 7999999888 566666533 3458899999999999
Q ss_pred EEEEcCCeEEEEeCCC
Q 009059 492 LVIGCYETLELWNMTE 507 (545)
Q Consensus 492 ~~~~~dg~I~iwd~~~ 507 (545)
.+.+..++|+||.++.
T Consensus 234 ~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 234 AASSNTETVHIFKLEK 249 (391)
T ss_pred EEecCCCeEEEEEecc
Confidence 9999999999998754
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.76 E-value=5.3e-17 Score=162.50 Aligned_cols=251 Identities=16% Similarity=0.210 Sum_probs=190.9
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEE
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 320 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l 320 (545)
.+-++|.+.|. .++++++|.+.|+|++|+.||+.+|+|+.|+.|.||+..- +-+.. ..|.+.|.|+.|+|-...|
T Consensus 34 rlliyD~ndG~---llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~Lk-YSH~D~IQCMsFNP~~h~L 108 (1081)
T KOG1538|consen 34 RLLVYDTSDGT---LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILK-YSHNDAIQCMSFNPITHQL 108 (1081)
T ss_pred EEEEEeCCCcc---cccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceee-eccCCeeeEeecCchHHHh
Confidence 35567777775 4678999999999999999999999999999999998543 22222 2599999999999998999
Q ss_pred EEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe---ccCCeeEEE
Q 009059 321 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMR 397 (545)
Q Consensus 321 ~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~---~~~~v~~l~ 397 (545)
++++-. ..-+|..+.... ...+ ....|.+++|..||. +++.|-.+|+|.+-+-...+.+..-. .+++|.+++
T Consensus 109 asCsLs-dFglWS~~qK~V--~K~k-ss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~ 183 (1081)
T KOG1538|consen 109 ASCSLS-DFGLWSPEQKSV--SKHK-SSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSIC 183 (1081)
T ss_pred hhcchh-hccccChhhhhH--Hhhh-hheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEE
Confidence 998764 477898775432 2222 345788999999975 45588889999998765444443333 345699999
Q ss_pred EeCCCC-----EEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEE
Q 009059 398 FQPRLG-----RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 398 ~sp~~~-----~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~ 471 (545)
|+|..+ .+++.....++.+|.+... .+-.-..-.-...|+.+.++|.|+..|+ |+.+.+|.-. + ..+.+
T Consensus 184 ~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-G---vrLGT 258 (1081)
T KOG1538|consen 184 WNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-G---VRLGT 258 (1081)
T ss_pred ecCCCCCCccceEEEEeccceeEEEEecce-eecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-C---eEEee
Confidence 999643 4666777778887777543 2222222334567999999999999888 9999999743 2 55666
Q ss_pred EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 472 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 472 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
+.....+|+.+...|++.+++.|+.||+|..|++-
T Consensus 259 vg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 259 VGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 66678899999999999999999999999999874
No 191
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=9.6e-17 Score=166.70 Aligned_cols=232 Identities=17% Similarity=0.126 Sum_probs=165.0
Q ss_pred CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCe-eeeEeccCcccEEEEEEeCC
Q 009059 284 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPS 359 (545)
Q Consensus 284 dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d---g~I~vwd~~~~~~-~~~~~~~h~~~V~~l~~~p~ 359 (545)
+..|.+||..... ...+..|...+..++|+|||++|+.++.+ ..|.+||+.++.. .+..+.+ ....++|+|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCC
Confidence 4689999987654 45667788889999999999999988754 3799999987653 2233333 3457899999
Q ss_pred CCcEEEEEcCCCcEE--EEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEE-CCCeEEEEECC--CCEEEEEecCCCCC
Q 009059 360 KEDLLCSCDNNSEIR--YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVE--TQVCRLKLQGHKNQ 434 (545)
Q Consensus 360 ~~~ll~s~s~dg~I~--lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~--~~~~~~~~~~h~~~ 434 (545)
+..++++.+.+|.+. +||+.++...........+....|+|++..++.++ .++...||++. .+.. ..+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC-
Confidence 988887777777654 55777666554444445578899999999877666 46777777654 3322 222 3433
Q ss_pred EEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC---CCCeEE
Q 009059 435 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM---TENKTL 511 (545)
Q Consensus 435 I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~---~~~~~~ 511 (545)
.++.|+|+|++|+..+...+.+||+.++.. .. +... .....+.|+|++++|++++.++.+.+|++ ......
T Consensus 336 -~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~---~~-lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~ 409 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDNVVKQDLTSGST---EV-LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA 409 (429)
T ss_pred -CCccCCCCCCEEEEEcCCCEEEEECCCCCe---EE-ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence 467899999999888855577799987632 11 1111 23356789999999999999887776654 444444
Q ss_pred EeccCCCCeeEEEEeCC
Q 009059 512 TLSAHDKLVSSLAASTV 528 (545)
Q Consensus 512 ~~~~h~~~V~~l~~spd 528 (545)
.+..|.+.+..++|+|-
T Consensus 410 ~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 410 RLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EccCCCCCCCCcccCCC
Confidence 77788888999999984
No 192
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.75 E-value=5.2e-17 Score=159.03 Aligned_cols=261 Identities=16% Similarity=0.247 Sum_probs=189.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEE-cC-------CCCEEEEEeCCCeEEEE
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF-SP-------SLSRLATSSADRTVRVW 332 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~-sp-------~~~~l~t~s~dg~I~vw 332 (545)
-|...|.||.|+.+...+.+++ |..+.+|..-+......+.-....|....+ -+ ....|+.++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 3666778999998877776665 555656543333333222222222211111 11 23478888999999998
Q ss_pred ECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE-eccCCeeEEEEeCCCCEEEEEECC
Q 009059 333 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 333 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
+-. ++ .-+....|.+.+.+-.|+|+|.-++ +.++||.|++|.-. |....++ .....|.|++|.|+.+.++.+ ..
T Consensus 91 ~k~-~r-VE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g 165 (737)
T KOG1524|consen 91 NKS-AR-VERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFC-QG 165 (737)
T ss_pred ccc-ch-hhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEe-cC
Confidence 754 23 2567788999999999999998877 88899999999854 4433333 344679999999997776654 34
Q ss_pred CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE
Q 009059 412 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 412 g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~ 490 (545)
+.+.|=.+.-...+...+.|.+-|.++.|++...++++|+ |-..+|||-.. ..+..-..|..+|++++|.|+ .
T Consensus 166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G----~~Lf~S~~~ey~ITSva~npd-~- 239 (737)
T KOG1524|consen 166 GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG----ANLFTSAAEEYAITSVAFNPE-K- 239 (737)
T ss_pred CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC----cccccCChhccceeeeeeccc-c-
Confidence 6677777777777788899999999999999999999999 77999999543 556677788999999999999 3
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 491 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 491 l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
++..++.+++++ .....+.|..++||+||..++.|+..|.+.+
T Consensus 240 ~~~v~S~nt~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 240 DYLLWSYNTARF----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ceeeeeeeeeee----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 444444445542 1234577999999999999999999987653
No 193
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=1.3e-16 Score=165.66 Aligned_cols=234 Identities=17% Similarity=0.168 Sum_probs=167.1
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCeE--EEEeccCCccEEEEEE
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTV--KSTLEEHTQWITDVRF 313 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~d---g~I~lwd~~~~~~--~~~l~~h~~~V~~l~~ 313 (545)
+..+.+||..... .+.+..|...|.+.+|+|||+.||.++.+ ..|++||+.+++. +..+.+| ...++|
T Consensus 183 ~~~i~i~d~dg~~----~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFN----QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAF 255 (429)
T ss_pred eEEEEEECCCCCC----ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeE
Confidence 4667777765433 34566788899999999999999988654 3699999988754 3334444 346899
Q ss_pred cCCCCEEEEEe-CCCeEEEE--ECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC-ceeeEEec
Q 009059 314 SPSLSRLATSS-ADRTVRVW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKC 389 (545)
Q Consensus 314 sp~~~~l~t~s-~dg~I~vw--d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~-~~~~~~~~ 389 (545)
+|||++|+.+. .+|.+.|| |+.++. ...+..+...+....|+|++..+++++..+|...+|++... .....+..
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~ 333 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG 333 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC
Confidence 99999888764 68876665 555443 45666677788899999999888878777888888876432 22222222
Q ss_pred cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcce
Q 009059 390 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC 468 (545)
Q Consensus 390 ~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~ 468 (545)
.. ....|+|+++.+++++.++ +.+||+.++........+ ....+.|+|+|++|+.++ ++.+.+|++... ....
T Consensus 334 -~~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~-~G~~ 407 (429)
T PRK01742 334 -RG-YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA-DGRF 407 (429)
T ss_pred -CC-CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCc
Confidence 22 4578999999988887754 666999988654333222 335678999999999988 887777776431 1155
Q ss_pred EEEEeeCCCceEEEEEcCC
Q 009059 469 IHELSCTGNKFHSCVFHPT 487 (545)
Q Consensus 469 i~~~~~~~~~v~~~~~sp~ 487 (545)
+..+..+...+...+|+|-
T Consensus 408 ~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 408 KARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred eEEccCCCCCCCCcccCCC
Confidence 6677777778888999885
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=1.6e-15 Score=142.95 Aligned_cols=230 Identities=13% Similarity=0.174 Sum_probs=179.9
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC--CcEEEEECCCCc
Q 009059 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGS 382 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d--g~I~lwd~~~~~ 382 (545)
...+..+.|+.+...|..|+.|| .++|..+.... ..........|..+-|+. .|++..+.+ ..+++++++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-CFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHH-hhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCc
Confidence 34577778999999999999998 68888775443 111122233466666763 355454433 359999999999
Q ss_pred eeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC---CCCCEEEEEEcCCCCEEEEEe---CCcEE
Q 009059 383 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS---DELVR 456 (545)
Q Consensus 383 ~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~---h~~~I~~l~~sp~g~~l~s~s---dg~I~ 456 (545)
.+..+..+..|.++.++.+ +|+++-.+ .|+|||+++-+.++++.. +...+.++.+++.+.||+.-+ .|.|.
T Consensus 80 ~ICe~~fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEecCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 9999998899999999874 45555444 499999999998887764 444566777777778998865 67999
Q ss_pred EEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC-eEEEEeCCCCeEE-EeccC--CCCeeEEEEeCCCCEE
Q 009059 457 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAH--DKLVSSLAASTVNGMV 532 (545)
Q Consensus 457 vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-~I~iwd~~~~~~~-~~~~h--~~~V~~l~~spd~~~l 532 (545)
+||+.+- ..+..+..|.+.+.+++|+++|.+|++++..| .|+||.+.++..+ .+... ...|.+|+|+|++.+|
T Consensus 157 l~d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 157 LFDTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEcccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 9999776 77888899999999999999999999999999 6899999999887 44422 3568899999999999
Q ss_pred EEEeCCCcEEEcC
Q 009059 533 ASASHDKCVKIWK 545 (545)
Q Consensus 533 as~s~Dg~I~iWd 545 (545)
++.+..++|+||+
T Consensus 234 ~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 234 AASSNTETVHIFK 246 (391)
T ss_pred EEecCCCeEEEEE
Confidence 9999999999985
No 195
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=2.3e-15 Score=139.53 Aligned_cols=271 Identities=15% Similarity=0.198 Sum_probs=197.4
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeee
Q 009059 264 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSL 341 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg-~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~-~l~t~s~dg~I~vwd~~~~~~~~ 341 (545)
+.|.-+.|..|..+++++ ..|+.|.+|++..-+-...+......+..++|+|||+ +|.+...|-.|.||.+.+.+..
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~- 127 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY- 127 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-
Confidence 456667777777665544 4577999999988777788888889999999999995 5566777999999999876542
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcC-----------------------------------CCcEEEEECCCCceeeE
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------------------------------NSEIRYWSINNGSCAGV 386 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~-----------------------------------dg~I~lwd~~~~~~~~~ 386 (545)
.+.--+..+..++|+|+|....+..-. +..+.+||---.-.+..
T Consensus 128 -~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 128 -LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred -EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 233233456888999998654432211 22344555332223334
Q ss_pred EeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEE----------------------------------------
Q 009059 387 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL---------------------------------------- 426 (545)
Q Consensus 387 ~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~---------------------------------------- 426 (545)
+...-++..++|+|.+..+++|+.|+.++|.+--+.+...
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 4555678899999998999999999988876532221100
Q ss_pred --------------------Eec------CCCCCEEEEEEcCCCCEEEEEeCC---cEEEEEcCCCCCcceEEEEeeCCC
Q 009059 427 --------------------KLQ------GHKNQVHSVCWNTSGEYLASVSDE---LVRVWSIGSGSKGECIHELSCTGN 477 (545)
Q Consensus 427 --------------------~~~------~h~~~I~~l~~sp~g~~l~s~sdg---~I~vwd~~~~~~~~~i~~~~~~~~ 477 (545)
.++ ...-.+.-++|++|..|+++-.|. .+-+||++..+ ++..-....
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~----l~avLiQk~ 362 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK----LHAVLIQKH 362 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh----hhhhhhhcc
Confidence 011 011246678999999999998865 79999997643 223333567
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCc
Q 009059 478 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 540 (545)
Q Consensus 478 ~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~ 540 (545)
+|....|+|....|+++.....+++|.......+......-.|..+.|.-+|..++..+.|-.
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 899999999999999999999999999988777766666688999999999999999998853
No 196
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.2e-15 Score=141.47 Aligned_cols=277 Identities=15% Similarity=0.233 Sum_probs=192.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec-cCCccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCe--
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-- 339 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~-~h~~~V~~l~~sp~-~~~l~t~s~dg~I~vwd~~~~~~-- 339 (545)
-.+..++|++.-.-+|++..|-.|++|+-.. +....++ .....|+|++|.|. ++.|+.|+..| |.+|.......
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 3477789998766788999999999999766 4444454 23567999999995 45677776554 99998753211
Q ss_pred -----------eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE-eccCCeeEEEEeCCCCEEEE
Q 009059 340 -----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILA 407 (545)
Q Consensus 340 -----------~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~~ 407 (545)
.+....+| .+|+++.|.+||..++-+.-.|..|.+||..++.++... ...+++.-+.|+|++.+|++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 12233455 689999999998877755567889999999999888766 45577889999999999999
Q ss_pred EECCCeEEEEECC-CCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcc------------eEEEEe-
Q 009059 408 AAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE------------CIHELS- 473 (545)
Q Consensus 408 ~~~dg~I~i~d~~-~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~------------~i~~~~- 473 (545)
++-|+..++|... +.....-.. -.+.|...+|+|+|++|.....+.-++|.+.-..... .+..+.
T Consensus 256 At~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e 334 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE 334 (445)
T ss_pred ecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchh
Confidence 9999999999544 444333333 3459999999999999888887766666654321100 111111
Q ss_pred --------eCCCceEEEEEcCCCCEEEEEEcCC--------eEEEEeCCCCeEEEec--c--CCCCeeEEEEeC---CCC
Q 009059 474 --------CTGNKFHSCVFHPTFPSLLVIGCYE--------TLELWNMTENKTLTLS--A--HDKLVSSLAAST---VNG 530 (545)
Q Consensus 474 --------~~~~~v~~~~~sp~~~~l~~~~~dg--------~I~iwd~~~~~~~~~~--~--h~~~V~~l~~sp---d~~ 530 (545)
...+++.+++|.|.|.+|++.-..+ .|.+||....-.+.+. + .......|+|+| ++.
T Consensus 335 ~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~ 414 (445)
T KOG2139|consen 335 VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGR 414 (445)
T ss_pred hhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCc
Confidence 1146789999999999999987655 4667777665554322 1 112244556655 345
Q ss_pred EEEEEeCCCcEEEc
Q 009059 531 MVASASHDKCVKIW 544 (545)
Q Consensus 531 ~las~s~Dg~I~iW 544 (545)
+|..+=..|.|.-|
T Consensus 415 lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 415 LLSIAWSTGRIQRY 428 (445)
T ss_pred EEEEEeccCceEee
Confidence 56555555665433
No 197
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=1.5e-16 Score=144.98 Aligned_cols=209 Identities=21% Similarity=0.375 Sum_probs=162.5
Q ss_pred eeEEEEeec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE-EEEe-----ccCCccEEEEEEcC--CCCEEEE
Q 009059 252 TFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTL-----EEHTQWITDVRFSP--SLSRLAT 322 (545)
Q Consensus 252 ~~~~~~~l~-~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~-~~~l-----~~h~~~V~~l~~sp--~~~~l~t 322 (545)
++..+..|. .|-+.|.|+.|.|+++.||+-. |..|.+|+++.... ...+ .+|....++-+|+| +++.+++
T Consensus 111 tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t 189 (370)
T KOG1007|consen 111 TLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT 189 (370)
T ss_pred hhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE
Confidence 345556665 5677999999999999999876 88999999987665 3333 23567788889998 6778887
Q ss_pred EeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-CceeeEEeccCC-eeEEEEeC
Q 009059 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSG-ATQMRFQP 400 (545)
Q Consensus 323 ~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~-~~~~~~~~~~~~-v~~l~~sp 400 (545)
. .|+++..||+++.+.....-..|...|..+.|+|+...++++|+.||.|++||.+. ..++..+..+.. +.++.|+|
T Consensus 190 t-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 190 T-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNP 268 (370)
T ss_pred e-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecC
Confidence 6 58899999999877656666788889999999999999999999999999999985 345555554443 88999999
Q ss_pred CC-CEEEEEECCCeEEEEECCCCE-----------------------------EEEEecCCCCCEEEEEEcCCCCEEE-E
Q 009059 401 RL-GRILAAAIENYISILDVETQV-----------------------------CRLKLQGHKNQVHSVCWNTSGEYLA-S 449 (545)
Q Consensus 401 ~~-~~l~~~~~dg~I~i~d~~~~~-----------------------------~~~~~~~h~~~I~~l~~sp~g~~l~-s 449 (545)
.. ..+++++.|..|.+|....-. .+.++..|.+.|++++|+.-..+++ +
T Consensus 269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS 348 (370)
T ss_pred ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence 54 556788889999998653210 1335667999999999998776555 4
Q ss_pred Ee-CCcEEEEEcCC
Q 009059 450 VS-DELVRVWSIGS 462 (545)
Q Consensus 450 ~s-dg~I~vwd~~~ 462 (545)
-+ ||.+.|=.+..
T Consensus 349 LSYDGRviIs~V~r 362 (370)
T KOG1007|consen 349 LSYDGRVIISSVPR 362 (370)
T ss_pred eccCceEEeecCCh
Confidence 45 99988877643
No 198
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.7e-15 Score=157.10 Aligned_cols=272 Identities=20% Similarity=0.230 Sum_probs=196.2
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC---CEEEEEeCCCeEEEEECCCCCeeeeEe
Q 009059 268 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATSSADRTVRVWDTENPDYSLRTF 344 (545)
Q Consensus 268 ~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~---~~l~t~s~dg~I~vwd~~~~~~~~~~~ 344 (545)
.-.||+|+++++... +..|.||...++.++..+.+|..+++.+.+.|.. .++++++.||.|++||...+.. ++++
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L-lkt~ 98 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL-LKTF 98 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE-EEEE
Confidence 357899999998876 5699999999999999999999999999998853 4788999999999999998764 6666
Q ss_pred ccCcccEEEEEEeCC---CCcEEEEEcCCC------------cEEEEECCCCce--eeEEeccCCeeEEEEeCCCCEEEE
Q 009059 345 TGHSTTVMSLDFHPS---KEDLLCSCDNNS------------EIRYWSINNGSC--AGVFKCQSGATQMRFQPRLGRILA 407 (545)
Q Consensus 345 ~~h~~~V~~l~~~p~---~~~ll~s~s~dg------------~I~lwd~~~~~~--~~~~~~~~~v~~l~~sp~~~~l~~ 407 (545)
..+ .++..+.+.|. ....+.....|. .++-+.+.+... ............+.+++. +.+..
T Consensus 99 ~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~-ge~~~ 176 (792)
T KOG1963|consen 99 DNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNS-GEFKG 176 (792)
T ss_pred ecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCC-ceEEE
Confidence 533 33444443221 111121222121 111111111000 000011111355666666 45555
Q ss_pred EECCCeEEEEECCCCEEEE----EecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCC-CCCcceEEEEeeCCCceEE
Q 009059 408 AAIENYISILDVETQVCRL----KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS-GSKGECIHELSCTGNKFHS 481 (545)
Q Consensus 408 ~~~dg~I~i~d~~~~~~~~----~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~-~~~~~~i~~~~~~~~~v~~ 481 (545)
...+..+++|...++.... .-..|...++|.+++|++++++++. ||.|.+|.--. .........+.-|...|.+
T Consensus 177 i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~ 256 (792)
T KOG1963|consen 177 IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS 256 (792)
T ss_pred EEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccce
Confidence 6666778888887754111 1123666799999999999999999 99999997443 2233455677789999999
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 482 CVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 482 ~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
++|+++|.+|++||..+.+.+|.+.+++..-+..-.++|..+.++||+.+.+....|+.|.+
T Consensus 257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 257 LSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred eEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEE
Confidence 99999999999999999999999999997777788899999999999999999999998876
No 199
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.73 E-value=1.9e-17 Score=159.72 Aligned_cols=262 Identities=16% Similarity=0.266 Sum_probs=210.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEec
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~ 345 (545)
-+.+.|+.+|+.|+.|+..|.|-.+|..++++...+.. ...|.++.|..+..+||++ ....+.|||-.. . .+..+.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~G-t-ElHClk 207 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNNG-T-ELHCLK 207 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCCC-c-EEeehh
Confidence 45689999999999999999999999999999988863 4568999999888888887 566899999763 3 366666
Q ss_pred cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE
Q 009059 346 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVC 424 (545)
Q Consensus 346 ~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~ 424 (545)
.| ..|..+.|.|- .+||++++..|.++.-|+.+|+.+..+... +.+..++-+|-+..+-+|...|+|.+|.....++
T Consensus 208 ~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 208 RH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred hc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 55 47999999998 588889999999999999999999877654 4577788899888888899999999999999999
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEE
Q 009059 425 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 503 (545)
Q Consensus 425 ~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iw 503 (545)
+..+..|.++|.+|++.++|+|+++.+ |..++|||++... .++++.. ......++||..| +++.+....|.||
T Consensus 286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~---ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY---QLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc---ccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence 999999999999999999999999999 9999999999873 4444443 4556777888777 6777777789999
Q ss_pred e-CCCCe---EEEeccC--CCCeeEEEEeCCCCEEEEEeCCC
Q 009059 504 N-MTENK---TLTLSAH--DKLVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 504 d-~~~~~---~~~~~~h--~~~V~~l~~spd~~~las~s~Dg 539 (545)
. .-.+. ......| .+.|..+.|.|-...|-.|..-|
T Consensus 360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 4 32211 1122233 35899999999776666655444
No 200
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=5.1e-15 Score=153.50 Aligned_cols=235 Identities=13% Similarity=0.105 Sum_probs=171.3
Q ss_pred CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCC
Q 009059 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 361 (545)
Q Consensus 285 g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~---dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~ 361 (545)
..|.+||.+..... .+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++. ..+....+.+..+.|+|+|+
T Consensus 179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence 37889998765443 34446678999999999999987643 45799999987653 33333334456789999999
Q ss_pred cEEEEEcCCC--cEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC-C--eEEEEECCCCEEEEEecCCCCCEE
Q 009059 362 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 436 (545)
Q Consensus 362 ~ll~s~s~dg--~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d-g--~I~i~d~~~~~~~~~~~~h~~~I~ 436 (545)
.++++.+.+| .|++||+.+++..........+....|+|+++.|+.++.+ + .|+++|+.++... .+..+.....
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~ 334 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ 334 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8887766555 5999999988776655555567889999999988877764 3 5666688776543 3333444567
Q ss_pred EEEEcCCCCEEEEEe--CC--cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCe
Q 009059 437 SVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 509 (545)
Q Consensus 437 ~l~~sp~g~~l~s~s--dg--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~ 509 (545)
...|+|+|++|+... ++ .|.+||+.++.. ..+.. ........|+|||++|+.++.++ .+++++++...
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~----~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCe----EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 789999999988766 32 688999987632 22221 12334678999999999999876 47888997777
Q ss_pred EEEeccCCCCeeEEEEeCC
Q 009059 510 TLTLSAHDKLVSSLAASTV 528 (545)
Q Consensus 510 ~~~~~~h~~~V~~l~~spd 528 (545)
...+..|.+.+...+|+|-
T Consensus 410 ~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 410 KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred eEECccCCCCcCCcccCCC
Confidence 7778788889999999873
No 201
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=4.1e-16 Score=142.31 Aligned_cols=238 Identities=19% Similarity=0.247 Sum_probs=175.5
Q ss_pred ccEEEEEEcC---CCCEEEEEeC----CCeEEEEECCCC--CeeeeEeccCcccEEEEEEeCCCC----cEEEEEcCCCc
Q 009059 306 QWITDVRFSP---SLSRLATSSA----DRTVRVWDTENP--DYSLRTFTGHSTTVMSLDFHPSKE----DLLCSCDNNSE 372 (545)
Q Consensus 306 ~~V~~l~~sp---~~~~l~t~s~----dg~I~vwd~~~~--~~~~~~~~~h~~~V~~l~~~p~~~----~ll~s~s~dg~ 372 (545)
-.+.++.|+. ...+|+.|+. .+.|.|..+... +.....-..|.-+++.+.|.|+.. .+||++ +-.
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCe
Confidence 4577778873 2447888765 456666655433 222222246889999999999863 467665 447
Q ss_pred EEEEECCCCc--ee--e------EEeccCCeeEEEEeC-CCCEEEEEECCCeEEEEECCCCE---EEEEecCCCCCEEEE
Q 009059 373 IRYWSINNGS--CA--G------VFKCQSGATQMRFQP-RLGRILAAAIENYISILDVETQV---CRLKLQGHKNQVHSV 438 (545)
Q Consensus 373 I~lwd~~~~~--~~--~------~~~~~~~v~~l~~sp-~~~~l~~~~~dg~I~i~d~~~~~---~~~~~~~h~~~I~~l 438 (545)
+|+|.+...+ .. . .-.+..+++++.|+. +-+++.+++-|-+..|||++++. ....+-.|...|..|
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI 202 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence 9999987422 11 1 112335688888886 34566677779999999999863 466778899999999
Q ss_pred EEcCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC-CEEEEEEcCC-eEEEEeCCCCeEE--E
Q 009059 439 CWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYE-TLELWNMTENKTL--T 512 (545)
Q Consensus 439 ~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg-~I~iwd~~~~~~~--~ 512 (545)
+|...+ ..+++.+ ||.||+||++.......+++-.....+...++|.+.. +++++-..|. .|.|.|++..... .
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence 999866 4666666 9999999999876666666655556788899998865 5566666665 8999999865433 8
Q ss_pred eccCCCCeeEEEEeCCC-CEEEEEeCCCcEEEcC
Q 009059 513 LSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 545 (545)
Q Consensus 513 ~~~h~~~V~~l~~spd~-~~las~s~Dg~I~iWd 545 (545)
+.+|.+.|++|+|.|.. ..|+|+|+|..+.|||
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWD 316 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCcceEEEEe
Confidence 88999999999999976 5899999999999997
No 202
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.72 E-value=1.5e-15 Score=140.52 Aligned_cols=224 Identities=16% Similarity=0.199 Sum_probs=171.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC---eEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 337 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~---~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~ 337 (545)
--..+|+|.+|++|+..+|++-....|.||..... +...++..|...|++|.|+|..+.|++|+.|..-+||....+
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 34578999999999999999999999999987654 567889999999999999999999999999999999998433
Q ss_pred -Ce-eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeE-----EeccCCeeEEEEeCCCCEEEEEEC
Q 009059 338 -DY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-----FKCQSGATQMRFQPRLGRILAAAI 410 (545)
Q Consensus 338 -~~-~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~-----~~~~~~v~~l~~sp~~~~l~~~~~ 410 (545)
+. +...+..+...++++.|+|.+ +.|++|+....|.+|-++...--.. ......|+++.|+|++-.+++|+.
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 32 233556688999999999995 5666898888999988775443211 223467899999999888888999
Q ss_pred CCeEEEEECC-----C-------------CEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEE
Q 009059 411 ENYISILDVE-----T-------------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 411 dg~I~i~d~~-----~-------------~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~ 471 (545)
|+..+||..- + |..+.++....+.|..+.|+|+|..|+-.+ |..+.+-|...... .+..
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~--~v~~ 244 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE--RVQS 244 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch--hccc
Confidence 9999998641 1 122333334567899999999999999888 99999999776531 2333
Q ss_pred EeeCCCceEEEEEcCC
Q 009059 472 LSCTGNKFHSCVFHPT 487 (545)
Q Consensus 472 ~~~~~~~v~~~~~sp~ 487 (545)
.....-+..++.|-.+
T Consensus 245 ~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISE 260 (361)
T ss_pred hhhccCCceeeEeecC
Confidence 3333355566666443
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.7e-16 Score=150.74 Aligned_cols=194 Identities=23% Similarity=0.258 Sum_probs=154.1
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEec-
Q 009059 267 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT- 345 (545)
Q Consensus 267 ~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~- 345 (545)
.+++|+.+|..|++|+.||++|||+......+.....|...|.++.|+||++.|++.+.| ..+||+++++.. +....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-LARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-hhhcCC
Confidence 679999999999999999999999999888888888999999999999999999999999 899999998743 43333
Q ss_pred -cCcccEEEEEEeCCC---C-cEEEEEcCCCcEEEEECCCCc------eeeEEeccCCeeEEEEeCCCCEEEEEECCCeE
Q 009059 346 -GHSTTVMSLDFHPSK---E-DLLCSCDNNSEIRYWSINNGS------CAGVFKCQSGATQMRFQPRLGRILAAAIENYI 414 (545)
Q Consensus 346 -~h~~~V~~l~~~p~~---~-~ll~s~s~dg~I~lwd~~~~~------~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I 414 (545)
.-......+.|..++ . .+++.....+.|+.||+.... ....+.....+.+++.+.+|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 223345567776654 2 233333455667777764322 12223344679999999999999999999999
Q ss_pred EEEECCCCEEEEEe-cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCC
Q 009059 415 SILDVETQVCRLKL-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 462 (545)
Q Consensus 415 ~i~d~~~~~~~~~~-~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~ 462 (545)
.|++..+-+.++.. +.|...|+.+.|+|+.+++++.+ |..+.|..+.-
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999988777655 45999999999999999999987 77888877654
No 204
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.71 E-value=4.2e-14 Score=142.59 Aligned_cols=298 Identities=16% Similarity=0.173 Sum_probs=191.1
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~ 318 (545)
+..+.+.|..+..... .+......-..+.|+|||+++++++.||.|.++|+.+++.+.+++.... ..++++++||+
T Consensus 15 ~~~v~viD~~t~~~~~---~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~ 90 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVA---RIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGK 90 (369)
T ss_dssp GTEEEEEETTT-SEEE---EEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTT
T ss_pred CCEEEEEECCCCeEEE---EEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCC
Confidence 3456667766655444 4444333334578999999999999999999999999999999876544 67899999999
Q ss_pred EEEEEe-CCCeEEEEECCCCCeeeeEecc-------CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee--eEEe
Q 009059 319 RLATSS-ADRTVRVWDTENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFK 388 (545)
Q Consensus 319 ~l~t~s-~dg~I~vwd~~~~~~~~~~~~~-------h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~--~~~~ 388 (545)
+++++. ..+.+.++|.++.+. ++.+.. ....+.++..+|....++++.-+.+.|.+.|......+ ..+.
T Consensus 91 ~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~ 169 (369)
T PF02239_consen 91 YVYVANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK 169 (369)
T ss_dssp EEEEEEEETTEEEEEETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE
T ss_pred EEEEEecCCCceeEeccccccc-eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec
Confidence 998775 589999999998764 554432 23467788888887767766666788999898765433 3455
Q ss_pred ccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecC----CCCCEEEEE-------Ec--CCCCEE-EEEeCC
Q 009059 389 CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG----HKNQVHSVC-------WN--TSGEYL-ASVSDE 453 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~----h~~~I~~l~-------~s--p~g~~l-~s~sdg 453 (545)
.........|+|++.+++++.. ++.|.++|.++++.+..+.. |..++..+- |. ..+... ...+.+
T Consensus 170 ~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~ 249 (369)
T PF02239_consen 170 VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTD 249 (369)
T ss_dssp --TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--
T ss_pred ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCC
Confidence 5566889999999998887654 78999999999988776532 334444332 21 112222 222244
Q ss_pred cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEE---E-cCCeEEEEeCCCCeEE-Eecc-CCCCeeEEEEeC
Q 009059 454 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI---G-CYETLELWNMTENKTL-TLSA-HDKLVSSLAAST 527 (545)
Q Consensus 454 ~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~---~-~dg~I~iwd~~~~~~~-~~~~-h~~~V~~l~~sp 527 (545)
.+.+||..+. +.+.++...+.. .-+..||+++++++. + ..+.|.++|.++.+.. .+.. -...+..+.|++
T Consensus 250 ~v~v~d~~~w---kvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~ 325 (369)
T PF02239_consen 250 PVSVHDDYAW---KVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP 325 (369)
T ss_dssp TTT-STTTBT---SEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T
T ss_pred ccccchhhcC---eEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC
Confidence 5556666554 778888877776 778889999999998 3 3469999999999876 3322 223589999999
Q ss_pred CCCEEEEEeCC--CcEEEcC
Q 009059 528 VNGMVASASHD--KCVKIWK 545 (545)
Q Consensus 528 d~~~las~s~D--g~I~iWd 545 (545)
+|+.+..+..+ +.|.|||
T Consensus 326 dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 326 DGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp TSSEEEEEEE--TTEEEEEE
T ss_pred CCCEEEEEEecCCCEEEEEE
Confidence 99966655544 3688886
No 205
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3.9e-15 Score=147.32 Aligned_cols=276 Identities=14% Similarity=0.162 Sum_probs=202.4
Q ss_pred CCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 009059 261 ASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 339 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~-latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~ 339 (545)
.|...-+.|..+|||+| ||+|.+--.|++||+....+...-.-....|.-.-++.|-..++.-..|.+|-+...-....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 46677888999999998 56777888999999987766644433445566666666766677777788887654432111
Q ss_pred eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECCCeEEEEE
Q 009059 340 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILD 418 (545)
Q Consensus 340 ~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I~i~d 418 (545)
.++ -...-..++++.-...+++.| ....|+-++++.|+.+..+... +.++++.+++..+.|++|+.+|.|..||
T Consensus 129 ~~R----IP~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 129 RTR----IPKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eee----cCcCCccccccCCCccEEEee-cCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 111 122344566654444566444 4667999999999999988876 6689999999989999999999999999
Q ss_pred CCCCEEEEEecC------CCC-----CEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcC
Q 009059 419 VETQVCRLKLQG------HKN-----QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 486 (545)
Q Consensus 419 ~~~~~~~~~~~~------h~~-----~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp 486 (545)
.++...+..+.. |.+ .|+++.|+.+|-.+++|. +|.|.|||+++... .+..-....-+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--LLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--eeecccCCccceeeecccc
Confidence 998766555432 323 499999999999999999 99999999998742 2222233456788888876
Q ss_pred CCCE-EEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 487 TFPS-LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 487 ~~~~-l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
.+.. -++......++|||-.+++..........++.+++-|++.++.+|-.++.+..
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCccee
Confidence 6332 33334445899999999999966666677999999999999999988876654
No 206
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=7e-15 Score=153.07 Aligned_cols=234 Identities=16% Similarity=0.093 Sum_probs=168.3
Q ss_pred CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCC
Q 009059 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 361 (545)
Q Consensus 285 g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d---g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~ 361 (545)
..|.+||.... ....+..+...+.+.+|+||++.|+.++.+ ..|.+||+.++.. ..+..+.+...++.|+|+++
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCC
Confidence 46889998654 344555677789999999999999988743 4699999987653 33344455566889999999
Q ss_pred cEEEEEcCCC--cEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-CC--eEEEEECCCCEEEEEecCCCCCEE
Q 009059 362 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQGHKNQVH 436 (545)
Q Consensus 362 ~ll~s~s~dg--~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg--~I~i~d~~~~~~~~~~~~h~~~I~ 436 (545)
.++++.+.+| .|++||+.+++...............|+|++..++.++. +| .|+++|+.+++... +..+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 8887776665 599999998876554443344567899999998887765 44 47888887765433 222334455
Q ss_pred EEEEcCCCCEEEEEe-C-C--cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCe
Q 009059 437 SVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 509 (545)
Q Consensus 437 ~l~~sp~g~~l~s~s-d-g--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~ 509 (545)
.++|+|+|++|+... + + .|.+||+.++.. . .+. +........|+|++++|+..+.++ .|+++++..+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~---~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV---R-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCe---E-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 789999999998765 3 2 699999977632 1 222 222345679999999888877643 78899997766
Q ss_pred EEEeccCCCCeeEEEEeC
Q 009059 510 TLTLSAHDKLVSSLAAST 527 (545)
Q Consensus 510 ~~~~~~h~~~V~~l~~sp 527 (545)
...+..+.+.+...+|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 666666677788888886
No 207
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.2e-14 Score=149.52 Aligned_cols=234 Identities=13% Similarity=0.156 Sum_probs=169.7
Q ss_pred CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCC
Q 009059 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 361 (545)
Q Consensus 285 g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~---dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~ 361 (545)
..|.+||.+. .....+..|...+.+.+|+|||+.|+..+. +..|.+||+.++.. ..+..+.+.+....|+|+|+
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence 4788889755 444556678889999999999999988764 46899999987653 44555667788999999999
Q ss_pred cEEEEEcCCCc--EEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-C--CeEEEEECCCCEEEEEecCCCCCEE
Q 009059 362 DLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-E--NYISILDVETQVCRLKLQGHKNQVH 436 (545)
Q Consensus 362 ~ll~s~s~dg~--I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-d--g~I~i~d~~~~~~~~~~~~h~~~I~ 436 (545)
.++++.+.++. |++||+.++................|+|++..++..+. + ..|+++|+.++.... +..+...+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~ 337 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS 337 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence 88878776665 88889988876554444444677899999998887764 3 368899988765443 333455667
Q ss_pred EEEEcCCCCEEEEEe-C-C--cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC------CeEEEEeCC
Q 009059 437 SVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY------ETLELWNMT 506 (545)
Q Consensus 437 ~l~~sp~g~~l~s~s-d-g--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d------g~I~iwd~~ 506 (545)
...|+|+|++|+... + + .|.+||+..+. ...+. ....+....|+|+|+.|+..+.+ ..|+++|+.
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCc----eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 789999999998876 2 2 68888875542 12222 22346778999999998876653 268888998
Q ss_pred CCeEEEeccCCCCeeEEEEeCC
Q 009059 507 ENKTLTLSAHDKLVSSLAASTV 528 (545)
Q Consensus 507 ~~~~~~~~~h~~~V~~l~~spd 528 (545)
++....+. ..+.+...+|+|-
T Consensus 413 g~~~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 413 GRNEREVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCceEEcc-CCCCccCcccCCC
Confidence 77665544 3455777788763
No 208
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.1e-15 Score=157.17 Aligned_cols=268 Identities=15% Similarity=0.197 Sum_probs=192.1
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEcC-----CCeEEEEecc-------CC
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTE-----SFTVKSTLEE-------HT 305 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp--dg~~latg~~dg~I~lwd~~-----~~~~~~~l~~-------h~ 305 (545)
..+++||+.++..+..+..-..-...|+.+.+-. |..+|++|+.||.|+||+-- ..+++..+.+ ..
T Consensus 1086 ~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r 1165 (1387)
T KOG1517|consen 1086 ERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGAR 1165 (1387)
T ss_pred ceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCC
Confidence 4679999999987766555555567899999876 55689999999999999632 2234433321 11
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce--
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-- 383 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~-- 383 (545)
+.=.-+.|.....+|++++.-..|+|||+...........+....|+++.-+-....++++|..||.|++||.+....
T Consensus 1166 ~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds 1245 (1387)
T KOG1517|consen 1166 GTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDS 1245 (1387)
T ss_pred CCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccc
Confidence 111345677666677777778899999999766534444455667888877666667888999999999999985432
Q ss_pred -eeEEe-ccC--CeeEEEEeCCCC-EEEEEECCCeEEEEECCCCEEE--EEecCCC---CCEEEEEEcCCCCEEEEEeCC
Q 009059 384 -AGVFK-CQS--GATQMRFQPRLG-RILAAAIENYISILDVETQVCR--LKLQGHK---NQVHSVCWNTSGEYLASVSDE 453 (545)
Q Consensus 384 -~~~~~-~~~--~v~~l~~sp~~~-~l~~~~~dg~I~i~d~~~~~~~--~~~~~h~---~~I~~l~~sp~g~~l~s~sdg 453 (545)
+...+ +.. +|..+.+.+.|- .+++++.+|.|++||++..... ..+..|. +.++++..++....+|+|+-+
T Consensus 1246 ~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q 1325 (1387)
T KOG1517|consen 1246 LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQ 1325 (1387)
T ss_pred cceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcc
Confidence 33333 222 388899988654 5999999999999999974222 2222232 359999999999999999999
Q ss_pred cEEEEEcCCCCCcceEEE----EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 454 LVRVWSIGSGSKGECIHE----LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 454 ~I~vwd~~~~~~~~~i~~----~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
.|+||++..... ..+.. +......+.+++|||..-.+++|..|..|.||.....
T Consensus 1326 ~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1326 LIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eEEEEecChhhh-cccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 999999875422 11111 1122356799999999999999999999999986554
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=4.5e-15 Score=137.43 Aligned_cols=233 Identities=19% Similarity=0.294 Sum_probs=181.3
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC-C
Q 009059 304 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-N 380 (545)
Q Consensus 304 h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~-~ 380 (545)
-..+|+|.+|++|...+|.+.....|.||...... ....++..|...|++++|.|..+.++ +|+.|..-++|... .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCCCCccccccCCC
Confidence 45789999999999999999999999999987655 35678999999999999999987766 99999999999984 4
Q ss_pred Cce---eeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE----EEEecCCCCCEEEEEEcCCCCEEEEEe-C
Q 009059 381 GSC---AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC----RLKLQGHKNQVHSVCWNTSGEYLASVS-D 452 (545)
Q Consensus 381 ~~~---~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~----~~~~~~h~~~I~~l~~sp~g~~l~s~s-d 452 (545)
++- +-.++++..++++.|+|.++.|++++....|.||-++.... .+.-+.+...|+++.|+|++-+|++|+ |
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 332 23445678899999999999999999999999988765432 223345778999999999999999999 9
Q ss_pred CcEEEEEcC-----CC----------CCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeE--EEecc
Q 009059 453 ELVRVWSIG-----SG----------SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT--LTLSA 515 (545)
Q Consensus 453 g~I~vwd~~-----~~----------~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~--~~~~~ 515 (545)
+..+||..- .. ..+..+.++....+.++.+.|+|+|..|+-.+.|..+.+-|...... .....
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~ 247 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVAT 247 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhh
Confidence 999998742 11 01223344546678899999999999999999999999999877752 23333
Q ss_pred CCCCeeEEEEeCCCCEEEEEeCC
Q 009059 516 HDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 516 h~~~V~~l~~spd~~~las~s~D 538 (545)
-.-+..++.|-.+. .++.+++|
T Consensus 248 ~~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 248 AQLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred ccCCceeeEeecCC-ceeecCCC
Confidence 33667777775443 34444444
No 210
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.68 E-value=1.2e-16 Score=163.90 Aligned_cols=280 Identities=18% Similarity=0.220 Sum_probs=207.7
Q ss_pred ccCCceecccccCCccccccCCCCCCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 009059 211 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 290 (545)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lw 290 (545)
.++.+.+.|..+|....... ....|..+++|...++. +....+||.+.|+.++.+.+..++|+++.|..|++|
T Consensus 187 lgH~naVyca~fDrtg~~Ii----tgsdd~lvKiwS~et~~---~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYII----TGSDDRLVKIWSMETAR---CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HhhhhheeeeeeccccceEe----ecCccceeeeeeccchh---hhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 34445566777776666554 33457899999987775 456789999999999999999999999999999999
Q ss_pred EcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCC-eeeeEec-cCcccEEEEEEeCCCCcEEEEE
Q 009059 291 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPD-YSLRTFT-GHSTTVMSLDFHPSKEDLLCSC 367 (545)
Q Consensus 291 d~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~-~~~-~~~~~~~-~h~~~V~~l~~~p~~~~ll~s~ 367 (545)
.+..+.++..+.+|++.|++|+|+|-. +.+.||++++||.+ ... +..+-+. .....+.++.|...+..++ ++
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~-Tg 334 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL-TG 334 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc-cc
Confidence 999999999999999999999999954 67789999999987 111 0001111 1234566677766655444 99
Q ss_pred cCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCC-CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCE
Q 009059 368 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 446 (545)
Q Consensus 368 s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~ 446 (545)
+.|++-..|.+....+.. ..+.-+.++.+- .+.+++-.+-.+++|++-++...+.+.+|...+..+.++|-+..
T Consensus 335 s~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred cCCcccccchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcH
Confidence 999998888765322211 011111111121 34555566788999999999999999999999999999997765
Q ss_pred EEE-Ee-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeE
Q 009059 447 LAS-VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT 510 (545)
Q Consensus 447 l~s-~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~ 510 (545)
++- ++ ||...|||+-.+.. +..+......+....|+++|..++....-|.++|.....++.
T Consensus 410 i~msag~dgst~iwdi~eg~p---ik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWEGIP---IKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred hhhhccCCCceEeeecccCCc---ceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 553 44 99999999988743 333334467788899999999999988889999998765543
No 211
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1e-14 Score=137.96 Aligned_cols=268 Identities=14% Similarity=0.157 Sum_probs=202.0
Q ss_pred CcccceeeeeecCCc---eeeEEEEeec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc--CCccEE
Q 009059 236 DPRDRVGRSAEVGKG---FTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWIT 309 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~---~~~~~~~~l~-~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~--h~~~V~ 309 (545)
++.|..+++|.+..- ...+++.... .|...|.|++|....++|++|+.+++|.+.|+++.+.+..+.. ..+.|+
T Consensus 74 GGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY 153 (609)
T KOG4227|consen 74 GGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVY 153 (609)
T ss_pred cCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCccccee
Confidence 345677888877643 2334555444 3558999999999999999999999999999999888877742 345899
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCeee--eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce-eeE
Q 009059 310 DVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGV 386 (545)
Q Consensus 310 ~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~--~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~-~~~ 386 (545)
.+..+|..+.|++.+.++.|.+||.+...... ..+.........+.|+|....|+++.+..+.+-+||++.... +..
T Consensus 154 ~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~ 233 (609)
T KOG4227|consen 154 HMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQ 233 (609)
T ss_pred ecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHh
Confidence 99999999999999999999999998654222 233334567888999999999999999999999999985431 111
Q ss_pred Ee----cc---CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE-EEEecCCC-------CCEEEEEEcCCCCEEEEEe
Q 009059 387 FK----CQ---SGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHK-------NQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 387 ~~----~~---~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~-~~~~~~h~-------~~I~~l~~sp~g~~l~s~s 451 (545)
.. .. .....+.|+|.|+.+++.-....-.+||+-+..+ +..+. |. ..+.+++|..+ .-+++|+
T Consensus 234 ~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D-~~v~tGS 311 (609)
T KOG4227|consen 234 RSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDD-YTVATGS 311 (609)
T ss_pred hhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeecc-eeeeccC
Confidence 11 11 2246789999999999988888888899887544 33333 32 25677788654 4488888
Q ss_pred CC-cEEEEEcCCCCC--------------------cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 452 DE-LVRVWSIGSGSK--------------------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 452 dg-~I~vwd~~~~~~--------------------~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
|. .|++|.+..... ...+..+++|..-+..+.|+|....|++.+-...++||.-
T Consensus 312 D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 312 DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 55 999999854211 1234567889999999999999999999999999999954
No 212
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=1.7e-15 Score=148.47 Aligned_cols=206 Identities=14% Similarity=0.148 Sum_probs=164.7
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEE
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 355 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~ 355 (545)
+.|+.++.||.+.|.+ +.++....+..|.+.|.|-+|+|||.-|++++.||.|++|.-.. ....++.....+|+|++
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG--MLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG--MLRSTVVQNEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc--hHHHHHhhcCceeEEEE
Confidence 4677888999999988 56788888999999999999999999999999999999998653 21334455677899999
Q ss_pred EeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCC
Q 009059 356 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 434 (545)
Q Consensus 356 ~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~ 434 (545)
|.|+.+.++++. .+.+.+-.+.....+-..+ +.+-|.++.|++..+.+++|+.|-..+|||.. |..++.-..|..+
T Consensus 153 W~p~S~~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 153 WAPNSNSIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA 229 (737)
T ss_pred ECCCCCceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence 999998888665 4567776666544444444 55568999999999999999999999999976 4556666679999
Q ss_pred EEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE
Q 009059 435 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 502 (545)
Q Consensus 435 I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i 502 (545)
|++++|.|+ +.++.++-+++++=. ...+.|..++|++||..+++|+..|.+.+
T Consensus 230 ITSva~npd-~~~~v~S~nt~R~~~--------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSYNTARFSS--------------PRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeeeccc-cceeeeeeeeeeecC--------------CCccceEEEEEcCCCceeeccccCceEEE
Confidence 999999999 667767666555221 23567999999999999999999996544
No 213
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=3e-13 Score=125.42 Aligned_cols=233 Identities=15% Similarity=0.228 Sum_probs=164.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEE-EeCC------CeEEEEECCCC
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSAD------RTVRVWDTENP 337 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t-~s~d------g~I~vwd~~~~ 337 (545)
....++|..|..-+++|..+ -.+||+.+..+.......+.+.+.-+..---.++|+- |+.+ ..|.|||=. .
T Consensus 7 ~~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~-k 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDL-K 84 (346)
T ss_pred ceeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecc-c
Confidence 34559999999888888755 5899999876654443333332222222223345554 3332 479999944 3
Q ss_pred CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC-CCceeeEEec---cCCeeEEEEeCCCCEEEEEE-CCC
Q 009059 338 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKC---QSGATQMRFQPRLGRILAAA-IEN 412 (545)
Q Consensus 338 ~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~-~~~~~~~~~~---~~~v~~l~~sp~~~~l~~~~-~dg 412 (545)
+.++..+. ...+|.++.+.++ .+++.- .+.|++|... +-+.++.+.. +.+..+++-..+...|+.-+ .-|
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riVvvl--~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIVVVL--ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEEEEe--cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 33455555 5678999999976 344333 7789999987 4555555543 33444444333433444433 469
Q ss_pred eEEEEECCCCEE--EEEecCCCCCEEEEEEcCCCCEEEEEe-CC-cEEEEEcCCCCCcceEEEEee--CCCceEEEEEcC
Q 009059 413 YISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHP 486 (545)
Q Consensus 413 ~I~i~d~~~~~~--~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg-~I~vwd~~~~~~~~~i~~~~~--~~~~v~~~~~sp 486 (545)
.|.|.|+...+. ...+..|...|.|++.+-+|..||+++ .| .|||||..++ ..+.++.. ....|.+++|+|
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEeCC
Confidence 999999987655 467888999999999999999999999 77 7999999998 66666653 346799999999
Q ss_pred CCCEEEEEEcCCeEEEEeCCC
Q 009059 487 TFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 487 ~~~~l~~~~~dg~I~iwd~~~ 507 (545)
+..+|++++..|+|+||.++.
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CccEEEEEcCCCeEEEEEeec
Confidence 999999999999999998865
No 214
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.2e-14 Score=139.54 Aligned_cols=190 Identities=14% Similarity=0.119 Sum_probs=147.7
Q ss_pred EEEEEeCCCCcEEEEEcCCCcEEEEECCCC-ceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC
Q 009059 352 MSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 430 (545)
Q Consensus 352 ~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~ 430 (545)
.+++|+.+| ..+++++.||++|+|+.... .......++..|.++.|+|++..|++.+.| ..+||+++++..+.....
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 678899886 46779999999999996544 444556678899999999999999999999 999999999977665553
Q ss_pred --CCCCEEEEEEcCCC---CEEEEEe---CCcEEEEEcCCCCCcc--eEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeE
Q 009059 431 --HKNQVHSVCWNTSG---EYLASVS---DELVRVWSIGSGSKGE--CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 500 (545)
Q Consensus 431 --h~~~I~~l~~sp~g---~~l~s~s---dg~I~vwd~~~~~~~~--~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I 500 (545)
.......+.|+.++ .+++.+. -+.|+.||+....... ...........|.+++.+++|++++.|+.+|.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 23356677888776 3333333 4478887775432211 222223345679999999999999999999999
Q ss_pred EEEeCCCCeEE--EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 501 ELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 501 ~iwd~~~~~~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
-|++..+.+.+ ....|...|+.+.|+||.+++++.+.|..+.|
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 99999998888 34589999999999999999999888877765
No 215
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=5.3e-14 Score=146.01 Aligned_cols=235 Identities=14% Similarity=0.058 Sum_probs=159.7
Q ss_pred CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCC
Q 009059 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 361 (545)
Q Consensus 285 g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d---g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~ 361 (545)
..|.+||.. +.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.++.. ..+....+.+.+..|+|++.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 467777764 44444555677889999999999999887653 3699999987753 33333445667899999999
Q ss_pred cEEEEEcCCCcEEEE--ECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-CCe--EEEEECCCCEEEEEecCCCCCEE
Q 009059 362 DLLCSCDNNSEIRYW--SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY--ISILDVETQVCRLKLQGHKNQVH 436 (545)
Q Consensus 362 ~ll~s~s~dg~I~lw--d~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~--I~i~d~~~~~~~~~~~~h~~~I~ 436 (545)
.++++.+.+|...+| |+..+................|+|+|..++..+. ++. |+++++.++...... .+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcC
Confidence 888787778775555 5555543332223334567889999998887664 344 445555555433222 2233445
Q ss_pred EEEEcCCCCEEEEEe-CC---cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCe
Q 009059 437 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 509 (545)
Q Consensus 437 ~l~~sp~g~~l~s~s-dg---~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~ 509 (545)
...|+|+|++|+..+ ++ .|.+||+.++.. . .+.. ........|+|+++.|+.++.++ .+++.++....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~---~-~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~ 406 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV---T-ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI 406 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe---E-EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence 678999999998776 43 699999987632 1 2221 22346789999999998888665 57777885544
Q ss_pred EEEeccCCCCeeEEEEeCC
Q 009059 510 TLTLSAHDKLVSSLAASTV 528 (545)
Q Consensus 510 ~~~~~~h~~~V~~l~~spd 528 (545)
...+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 4456567777888889874
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.65 E-value=7.1e-15 Score=144.50 Aligned_cols=243 Identities=14% Similarity=0.196 Sum_probs=164.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE-----EEeccCCccEEEEEE-----cCCCCEEEEEeCCCeEEEEECC
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-----STLEEHTQWITDVRF-----SPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~-----~~l~~h~~~V~~l~~-----sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
++...++-.|++|+..- ...+++|+...+..+ +.+. .....+|-+| .+++--|+.|-.-|.|.+.|..
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y-~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREY-KGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcc-cCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 44455555677776653 347888887643222 1111 1122344445 3456678888888889988876
Q ss_pred CCCeeeeEec----cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC
Q 009059 336 NPDYSLRTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 336 ~~~~~~~~~~----~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
.... .+.+. -.+..|+|+.|.|.++.++..+-.+|.+++||..- .......+....+++..+.+....
T Consensus 204 ~~~~-sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 204 NFEV-SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred hhHH-HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeee
Confidence 5322 11111 13468999999999888888889999999999721 111111122223344444333221
Q ss_pred CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE
Q 009059 412 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 412 g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~ 490 (545)
+. .+..++..+.--.+.|+.++|+|||++||+.+ ||.+||||+.+. +.+..++.--+...|++|+|||++
T Consensus 276 sk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 276 SK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred cc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccE
Confidence 11 11133333433456899999999999999999 999999999876 444455555678999999999999
Q ss_pred EEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeC
Q 009059 491 LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST 527 (545)
Q Consensus 491 l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~sp 527 (545)
|++|+.|+-|.||.+.+.+++ .-.+|...|..++|.|
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999 5679999999999983
No 217
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.7e-14 Score=137.08 Aligned_cols=260 Identities=15% Similarity=0.204 Sum_probs=195.6
Q ss_pred CCCeEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCeEEEEe------ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 263 TSKVESCHFSPDGK--LLATGGHDKKAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 263 ~~~V~~l~~spdg~--~latg~~dg~I~lwd~~~~~~~~~l------~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
...|..++|.-|++ .|...+.+..+..+.+........+ ......|..++.. ...|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 34577777776554 4554546667777776665544332 3445667666664 347888889999999998
Q ss_pred CCCC---eeeeEeccCcccEEEEEEeCCCCcEEEEEcCC--CcEEEEECCCCceeeEEecc----------CCeeEEEEe
Q 009059 335 ENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQ----------SGATQMRFQ 399 (545)
Q Consensus 335 ~~~~---~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d--g~I~lwd~~~~~~~~~~~~~----------~~v~~l~~s 399 (545)
+.+. .++..+..+ ..+..+.-++...+++++|+.. ..+.+||+...+.+..-+.. --++.+.|.
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 8443 123333323 5677788888888999999988 89999999988655443321 115678898
Q ss_pred CC--CCEEEEEECCCeEEEEECCCC-EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEE-EEee
Q 009059 400 PR--LGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH-ELSC 474 (545)
Q Consensus 400 p~--~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~-~~~~ 474 (545)
+. ...|++++.-+.|++||.+.+ +++..+.-...+|+++...|++++|++|. -+.+..||++.+. ... .+.+
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k---l~g~~~kg 288 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK---LLGCGLKG 288 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCce---eeccccCC
Confidence 87 788999999999999999975 56777877788999999999999999999 8899999999873 333 3677
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCC
Q 009059 475 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 528 (545)
Q Consensus 475 ~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd 528 (545)
..+.|+++..+|..+++++++-|..|+|+|+.+.+++.-..-...+++|-+.++
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 788999999999999999999999999999999777633334455667766554
No 218
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.65 E-value=4.8e-15 Score=147.90 Aligned_cols=239 Identities=15% Similarity=0.240 Sum_probs=169.7
Q ss_pred EcCCCCEEEE--EeCCCcEEEEEcCC-CeEE----EEeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCe---
Q 009059 271 FSPDGKLLAT--GGHDKKAVLWCTES-FTVK----STLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY--- 339 (545)
Q Consensus 271 ~spdg~~lat--g~~dg~I~lwd~~~-~~~~----~~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~~--- 339 (545)
|+.+.+++|+ .+.-|.|-||++.. |++. -.+. ....|+++.|.| |...|++++.||.|++|.+..+..
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 3444556554 35568999999864 3322 1221 346799999999 778999999999999999876542
Q ss_pred ---eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEE
Q 009059 340 ---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 340 ---~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
+...+..|...|+++.|+|-...++++++.|.+|++||+.+.+....+. +...|..++|+|+|..+++.+.||.|+
T Consensus 666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 3457889999999999999888899999999999999999988776664 556799999999999999999999999
Q ss_pred EEECCCCEE-EEEecCC-CCCEEEEEEcCCCCEEEEEe-CC----cEEEEEcCCCCCcceEEEEeeC-CCceEEEEEcCC
Q 009059 416 ILDVETQVC-RLKLQGH-KNQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPT 487 (545)
Q Consensus 416 i~d~~~~~~-~~~~~~h-~~~I~~l~~sp~g~~l~s~s-dg----~I~vwd~~~~~~~~~i~~~~~~-~~~v~~~~~sp~ 487 (545)
+|+.+.++. ++.-.+. ...--.|.|.-+|+++++.+ |. .|.+||..+-.. ..+.+.... ...+.--.+.+|
T Consensus 746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-~pl~t~~lDvaps~LvP~YD~D 824 (1012)
T KOG1445|consen 746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-RPLYTQVLDVAPSPLVPHYDYD 824 (1012)
T ss_pred EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-CcceeeeecccCccccccccCC
Confidence 999987643 3332221 12335677888999888776 54 788998765431 122221111 111112234555
Q ss_pred CCE-EEEEEcCCeEEEEeCCCCeEE
Q 009059 488 FPS-LLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 488 ~~~-l~~~~~dg~I~iwd~~~~~~~ 511 (545)
... +++|-.|..|++|.+-.....
T Consensus 825 s~~lfltGKGD~~v~~yEv~~esPy 849 (1012)
T KOG1445|consen 825 SNVLFLTGKGDRFVNMYEVIYESPY 849 (1012)
T ss_pred CceEEEecCCCceEEEEEecCCCce
Confidence 554 455666779999998655443
No 219
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=5.6e-14 Score=146.32 Aligned_cols=234 Identities=18% Similarity=0.159 Sum_probs=160.8
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~d---g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
..+.+||...+. .+.+..|...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +..+.+...+++|+||
T Consensus 184 ~~l~i~D~~g~~----~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDGYN----PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCCCC----ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCC
Confidence 345666654332 33455677889999999999999987743 469999998876543 3334445568899999
Q ss_pred CCEEE-EEeCCC--eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCc--EEEEECCCCceeeEEeccC
Q 009059 317 LSRLA-TSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQS 391 (545)
Q Consensus 317 ~~~l~-t~s~dg--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~--I~lwd~~~~~~~~~~~~~~ 391 (545)
|+.|+ +.+.+| .|.+||+.++. +..+..+.......+|+|++..++++...+|. |+++|+.+++.........
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~ 336 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN 336 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC
Confidence 99776 445555 59999998765 45555565566788999999888877766655 7777877766544333233
Q ss_pred CeeEEEEeCCCCEEEEEECCC---eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-C-C--cEEEEEcCCCC
Q 009059 392 GATQMRFQPRLGRILAAAIEN---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-E--LVRVWSIGSGS 464 (545)
Q Consensus 392 ~v~~l~~sp~~~~l~~~~~dg---~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-d-g--~I~vwd~~~~~ 464 (545)
......|+|++++++....++ .|.+||+.++... .+. +........|+|+|++|+..+ + + .|.++++...
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~- 413 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR- 413 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-
Confidence 355789999999988876543 6999999887655 333 233455679999999888776 2 2 6777777542
Q ss_pred CcceEEEEeeCCCceEEEEEcC
Q 009059 465 KGECIHELSCTGNKFHSCVFHP 486 (545)
Q Consensus 465 ~~~~i~~~~~~~~~v~~~~~sp 486 (545)
....+..+...+...+|+|
T Consensus 414 ---~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 ---VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ---ceEEcccCCCCCCCCccCC
Confidence 2333333445566667765
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=9.3e-14 Score=144.09 Aligned_cols=234 Identities=17% Similarity=0.135 Sum_probs=159.0
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~---dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
..+.++|..... .+.+..+...+.+.+|||||+.||..+. +..|++|++.+++..... ...+.+..++|+||
T Consensus 179 ~~l~~~d~dg~~----~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPD 253 (429)
T PRK03629 179 YELRVSDYDGYN----QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPD 253 (429)
T ss_pred eeEEEEcCCCCC----CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCC
Confidence 345555544332 2233456778999999999999987642 357999999887644322 22333456899999
Q ss_pred CCEEEEE-eCCC--eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCc--EEEEECCCCceeeEEeccC
Q 009059 317 LSRLATS-SADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQS 391 (545)
Q Consensus 317 ~~~l~t~-s~dg--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~--I~lwd~~~~~~~~~~~~~~ 391 (545)
|+.|+.. +.+| .|.+||+.++. ...+..+...+....|+|+++.++++...++. |+++|+.+++.........
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~ 331 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGS 331 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCC
Confidence 9988865 4444 58889998765 34445455678899999999888877765554 5555777665543333333
Q ss_pred CeeEEEEeCCCCEEEEEECC---CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CC---cEEEEEcCCCC
Q 009059 392 GATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE---LVRVWSIGSGS 464 (545)
Q Consensus 392 ~v~~l~~sp~~~~l~~~~~d---g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg---~I~vwd~~~~~ 464 (545)
......|+|+|++++..+.+ ..|++||+.++.... +.. ........|+|||++|+..+ ++ .+.++++...
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~- 408 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR- 408 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC-
Confidence 45678999999998887653 368899998886443 332 12334678999999998888 55 3677777432
Q ss_pred CcceEEEEeeCCCceEEEEEcC
Q 009059 465 KGECIHELSCTGNKFHSCVFHP 486 (545)
Q Consensus 465 ~~~~i~~~~~~~~~v~~~~~sp 486 (545)
....+..+...+...+|+|
T Consensus 409 ---~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 409 ---FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ---CeEECccCCCCcCCcccCC
Confidence 3344555677788888887
No 221
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=2e-13 Score=135.48 Aligned_cols=268 Identities=18% Similarity=0.280 Sum_probs=173.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEE-----eC-----CCeEEEE
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-----SA-----DRTVRVW 332 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~-----s~-----dg~I~vw 332 (545)
..+++..+++++|+++|.+. +..++|++..++..+.+...- .+.++.|+|-+.+|.+= .. .-.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 34477889999999999875 678999999888655444433 78999999999998762 11 2357799
Q ss_pred ECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC--------------------
Q 009059 333 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-------------------- 392 (545)
Q Consensus 333 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~-------------------- 392 (545)
++++ ......+..-...-+++.|++|.. +. .--..+.+++|++.+.+....--+..+
T Consensus 111 ~vet-~~~~s~~q~k~Q~~W~~qfs~dEs-l~-arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvP 187 (566)
T KOG2315|consen 111 NVET-GVQRSQIQKKMQNGWVPQFSIDES-LA-ARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVP 187 (566)
T ss_pred eecc-ceehhheehhhhcCcccccccchh-hh-hhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEcc
Confidence 9987 332222222111124666666532 21 111234555555543221111111111
Q ss_pred --------------------------------eeEEEEeCCCCEEEEEE-C--C---------CeEEEEECCCCEEEEEe
Q 009059 393 --------------------------------ATQMRFQPRLGRILAAA-I--E---------NYISILDVETQVCRLKL 428 (545)
Q Consensus 393 --------------------------------v~~l~~sp~~~~l~~~~-~--d---------g~I~i~d~~~~~~~~~~ 428 (545)
-..+.|++.+.-|++.. . | ..++++++....+...+
T Consensus 188 e~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L 267 (566)
T KOG2315|consen 188 EKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL 267 (566)
T ss_pred CCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec
Confidence 22455665554433321 1 2 25777777744555444
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe---CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC---CeEEE
Q 009059 429 QGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLEL 502 (545)
Q Consensus 429 ~~h~~~I~~l~~sp~g~~l~s~s---dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d---g~I~i 502 (545)
. ..++|+++.|+|+++-++++. --.+.|||++-. . .+.-..++-+++-|+|.|++|+.+|-+ |.|.|
T Consensus 268 ~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----~--v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 268 L-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----P--VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEV 340 (566)
T ss_pred C-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----E--eEeCCCCCccceEECCCCCEEEEeecCCCCCceEE
Confidence 4 478999999999998776655 558999998642 3 333456788899999999999999876 49999
Q ss_pred EeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeC------CCcEEEcC
Q 009059 503 WNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH------DKCVKIWK 545 (545)
Q Consensus 503 wd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~------Dg~I~iWd 545 (545)
||+.+.+++ .+..-. -+-+.|+|||.+++|+.. |+.++||+
T Consensus 341 wDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 341 WDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred EeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 999998777 333332 345789999999998874 67788885
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=1.5e-13 Score=127.47 Aligned_cols=231 Identities=13% Similarity=0.175 Sum_probs=170.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee-eEeccCcccEEEEEEeCCCCcEEEEEcCC------CcEEEEECC
Q 009059 307 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSIN 379 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~-~~~~~h~~~V~~l~~~p~~~~ll~s~s~d------g~I~lwd~~ 379 (545)
....++|+.|...+++|..+| .+||+.+--+... +.+....-.+..+-|- .+.+...|+.+ ..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 345599999999999998777 8999987533211 1111111223333333 24555555544 479999988
Q ss_pred CCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECC-CCEEEEEecC--CCCCEEEEEEcCCCCEEEEEe--CCc
Q 009059 380 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS--DEL 454 (545)
Q Consensus 380 ~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~--h~~~I~~l~~sp~g~~l~s~s--dg~ 454 (545)
..+++.++....+|..+.+.++ .++.-.++.|+||... +.+.++.+.. ....+.+++-..+..+||.-+ -|.
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 8899999999999999999986 4555678999999988 4455555543 223344454444556777766 779
Q ss_pred EEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC-eEEEEeCCCCeEE-Eec--cCCCCeeEEEEeCCCC
Q 009059 455 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLS--AHDKLVSSLAASTVNG 530 (545)
Q Consensus 455 I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-~I~iwd~~~~~~~-~~~--~h~~~V~~l~~spd~~ 530 (545)
|.|-|+...... .-..+..|...|.+++...+|..+++++..| -|+|||..++..+ ++. .....|.+|+|||+..
T Consensus 161 vQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 161 VQIVDLASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEEEEhhhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 999999875331 3467788999999999999999999999999 5899999999888 443 2456799999999999
Q ss_pred EEEEEeCCCcEEEc
Q 009059 531 MVASASHDKCVKIW 544 (545)
Q Consensus 531 ~las~s~Dg~I~iW 544 (545)
+||++|+.|+|+||
T Consensus 240 ~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIF 253 (346)
T ss_pred EEEEEcCCCeEEEE
Confidence 99999999999997
No 223
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.64 E-value=6.2e-12 Score=126.84 Aligned_cols=263 Identities=12% Similarity=0.126 Sum_probs=181.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeC----CCcEEEEEcCC--Ce--EEEEeccCCccEEEEEEcCCCCEEEEEeC-CCeEEEEE
Q 009059 263 TSKVESCHFSPDGKLLATGGH----DKKAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWD 333 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~----dg~I~lwd~~~--~~--~~~~l~~h~~~V~~l~~sp~~~~l~t~s~-dg~I~vwd 333 (545)
......++++|++++|.+... ++.|..|.+.. ++ .+............++++|++++|+++.. +|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 344567899999999998876 46898888765 33 33344434455678999999999999875 89999999
Q ss_pred CCCCCeeeeE---ec----------cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc--eee----EEeccCCee
Q 009059 334 TENPDYSLRT---FT----------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAG----VFKCQSGAT 394 (545)
Q Consensus 334 ~~~~~~~~~~---~~----------~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~--~~~----~~~~~~~v~ 394 (545)
+......... +. .......++.|+|+++.++++.-....|++|++.... ... .+....+..
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 9874332211 11 1234578899999998888766556689999997654 322 223456689
Q ss_pred EEEEeCCCCEEEEEEC-CCeEEEEECC--CCE--EEEEecC----C--CCCEEEEEEcCCCCEEEEEe--CCcEEEEEcC
Q 009059 395 QMRFQPRLGRILAAAI-ENYISILDVE--TQV--CRLKLQG----H--KNQVHSVCWNTSGEYLASVS--DELVRVWSIG 461 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~~-dg~I~i~d~~--~~~--~~~~~~~----h--~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~ 461 (545)
.+.|+|+++++++... ++.|.+|++. ++. .+..+.. . ......|+++|+|++|+++. ++.|.+|++.
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 9999999999888776 7889999888 443 2222221 1 12688999999999999887 6699999994
Q ss_pred C-CCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-CeEEEEeC--CCCeEEEec--cCCCCeeEEEE
Q 009059 462 S-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNM--TENKTLTLS--AHDKLVSSLAA 525 (545)
Q Consensus 462 ~-~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~--~~~~~~~~~--~h~~~V~~l~~ 525 (545)
. ......+..+.......+.+.++|++++|+++..+ +.|.+|++ +++.+.... ..-....||.|
T Consensus 276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 276 PATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred cCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 3 23345666666666778999999999999998865 48888866 566655322 23344556655
No 224
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.62 E-value=8.6e-14 Score=130.04 Aligned_cols=277 Identities=17% Similarity=0.308 Sum_probs=190.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-----EEEEeccC------------CccEEEEEEcCCC--CEEEEE
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEH------------TQWITDVRFSPSL--SRLATS 323 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~-----~~~~l~~h------------~~~V~~l~~sp~~--~~l~t~ 323 (545)
.+-|.++.|..+|.+||||..+|.|.+|.-+... ....+..| ...|..++|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568999999999999999999999999643221 22333333 3458889998864 467777
Q ss_pred eCCCeEEEEECCCCCeee----------------------------------eE-eccCcccEEEEEEeCCCCcEEEEEc
Q 009059 324 SADRTVRVWDTENPDYSL----------------------------------RT-FTGHSTTVMSLDFHPSKEDLLCSCD 368 (545)
Q Consensus 324 s~dg~I~vwd~~~~~~~~----------------------------------~~-~~~h~~~V~~l~~~p~~~~ll~s~s 368 (545)
+.|.+|++|.+....... +. -.+|.-.|.+|.++.|.+.++ +++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SAD 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SAD 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ecc
Confidence 899999999876432111 11 125888899999999987666 554
Q ss_pred CCCcEEEEECCCCc-eeeEEe--------ccCCeeEEEEeCC-CCEEEEEECCCeEEEEECCCCEEE----EEec-----
Q 009059 369 NNSEIRYWSINNGS-CAGVFK--------CQSGATQMRFQPR-LGRILAAAIENYISILDVETQVCR----LKLQ----- 429 (545)
Q Consensus 369 ~dg~I~lwd~~~~~-~~~~~~--------~~~~v~~l~~sp~-~~~l~~~~~dg~I~i~d~~~~~~~----~~~~----- 429 (545)
|=.|.+|+++--. +..... ...-|++..|+|. .+.++..++.|.|++.|++..... ..+.
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 7789999986432 222211 1123788899995 466777888999999999843211 1111
Q ss_pred -------CCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCC------------C---ceEEEEEcCC
Q 009059 430 -------GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG------------N---KFHSCVFHPT 487 (545)
Q Consensus 430 -------~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~------------~---~v~~~~~sp~ 487 (545)
.--..|..+.|+++|+|+++-.--+|++||+.... ..+.++..|. . .-..|+|+.+
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 11246889999999999998877899999995443 3344444332 1 2356899999
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeEE--Eec--------------------cC-------------CCCeeEEEEeCCCCEE
Q 009059 488 FPSLLVIGCYETLELWNMTENKTL--TLS--------------------AH-------------DKLVSSLAASTVNGMV 532 (545)
Q Consensus 488 ~~~l~~~~~dg~I~iwd~~~~~~~--~~~--------------------~h-------------~~~V~~l~~spd~~~l 532 (545)
+.++++|+..+.+++|++..+... ++. +. ...|...+|+|..+.+
T Consensus 341 ~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~i 420 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSI 420 (433)
T ss_pred cceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCcccee
Confidence 999999999999999996544322 110 00 1124556899999999
Q ss_pred EEEeCCCcEEEc
Q 009059 533 ASASHDKCVKIW 544 (545)
Q Consensus 533 as~s~Dg~I~iW 544 (545)
|.+..+. +.||
T Consensus 421 a~aatnn-lyif 431 (433)
T KOG1354|consen 421 AVAATNN-LYIF 431 (433)
T ss_pred eeeecCc-eEEe
Confidence 9888765 4443
No 225
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=1.3e-13 Score=143.16 Aligned_cols=223 Identities=17% Similarity=0.170 Sum_probs=151.1
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEE-EEeCCCeEEEEE
Q 009059 258 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWD 333 (545)
Q Consensus 258 ~l~~H~~~V~~l~~spdg~~latg~~d---g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~-t~s~dg~I~vwd 333 (545)
.+..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|+|||+.|+ +.+.+|...||.
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 345677889999999999999887643 359999999886643 333345567899999999887 467788777776
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEE--CCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS--INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd--~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
++........+..+...+....|+|+|+.+++++..+|...+|. +.++................|+|+|++++..+.+
T Consensus 269 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 269 VNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRV 348 (427)
T ss_pred EECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEcc
Confidence 54222224556556666678899999998887766566666665 4455433332222334567899999999887765
Q ss_pred C---eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-C-C--cEEEEEcCCCCCcceEEEEeeCCCceEEEEE
Q 009059 412 N---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVF 484 (545)
Q Consensus 412 g---~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-d-g--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~ 484 (545)
+ .|++||+.+++...... ........|+|+|++|+... + + .+.+.++. + .....+..+.+.+...+|
T Consensus 349 ~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~w 422 (427)
T PRK02889 349 GGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPSW 422 (427)
T ss_pred CCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCcc
Confidence 4 69999999876543322 23346789999999988877 3 3 35555653 2 223334444556667777
Q ss_pred cCC
Q 009059 485 HPT 487 (545)
Q Consensus 485 sp~ 487 (545)
+|-
T Consensus 423 sp~ 425 (427)
T PRK02889 423 GPF 425 (427)
T ss_pred CCC
Confidence 763
No 226
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.2e-13 Score=140.82 Aligned_cols=232 Identities=13% Similarity=0.122 Sum_probs=160.6
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~---dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.+.++|.... ..+.+..|...|.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+...+|+|||
T Consensus 183 ~l~~~d~dg~----~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 183 RLAIMDQDGA----NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred EEEEECCCCC----CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCC
Confidence 4445554322 23445678889999999999999988764 468999999887654 444566678889999999
Q ss_pred CEEE-EEeCCCe--EEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC--cEEEEECCCCceeeEEeccCC
Q 009059 318 SRLA-TSSADRT--VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSG 392 (545)
Q Consensus 318 ~~l~-t~s~dg~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg--~I~lwd~~~~~~~~~~~~~~~ 392 (545)
+.|+ +.+.++. |.+||+.++. ...+..+........|+|+++.++++...+| .|++||+..++..........
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~ 335 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR 335 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc
Confidence 9776 4555554 7777887654 4556666666778999999988887665544 688889887665554444455
Q ss_pred eeEEEEeCCCCEEEEEECC---CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-C------CcEEEEEcCC
Q 009059 393 ATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D------ELVRVWSIGS 462 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~d---g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-d------g~I~vwd~~~ 462 (545)
+....|+|+++.++....+ ..|.+||+..+... .+. ....+..+.|+|||+.|+... + ..++++|+..
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 6778999999999887653 36888998665432 232 233567889999999887755 2 2477777765
Q ss_pred CCCcceEEEEeeCCCceEEEEEcC
Q 009059 463 GSKGECIHELSCTGNKFHSCVFHP 486 (545)
Q Consensus 463 ~~~~~~i~~~~~~~~~v~~~~~sp 486 (545)
+.. ..+. ....+...+|+|
T Consensus 414 ~~~----~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 414 RNE----REVP-TPGDASDPAWSP 432 (435)
T ss_pred Cce----EEcc-CCCCccCcccCC
Confidence 421 2222 233455666765
No 227
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.61 E-value=9.3e-12 Score=125.57 Aligned_cols=268 Identities=13% Similarity=0.167 Sum_probs=181.7
Q ss_pred EEEEeCC----CcEEEEEc--CCCeEEEEe-ccCCccEEEEEEcCCCCEEEEEeC----CCeEEEEECCCC--Ce-eeeE
Q 009059 278 LATGGHD----KKAVLWCT--ESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSA----DRTVRVWDTENP--DY-SLRT 343 (545)
Q Consensus 278 latg~~d----g~I~lwd~--~~~~~~~~l-~~h~~~V~~l~~sp~~~~l~t~s~----dg~I~vwd~~~~--~~-~~~~ 343 (545)
+++|++. +.|.+|++ +++++...- .........++++|++++|+++.. ++.|..|++... .. .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4556655 68998887 455543221 123345677999999999999877 569999998764 22 1223
Q ss_pred eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-CceeeE---Ee-----------ccCCeeEEEEeCCCCEEEEE
Q 009059 344 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV---FK-----------CQSGATQMRFQPRLGRILAA 408 (545)
Q Consensus 344 ~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~-~~~~~~---~~-----------~~~~v~~l~~sp~~~~l~~~ 408 (545)
..........++++|++..++++...+|.|.++++.. +..... +. ......++.|+|+++++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 3323455678999999999998888899999999987 443332 21 12347899999999998887
Q ss_pred EC-CCeEEEEECCCCE--E--EEEec-CCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCC-CcceEEEEeeC----
Q 009059 409 AI-ENYISILDVETQV--C--RLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELSCT---- 475 (545)
Q Consensus 409 ~~-dg~I~i~d~~~~~--~--~~~~~-~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~-~~~~i~~~~~~---- 475 (545)
.. ...|++|++.... . ...+. ........++|+|+++++++.. ++.|.+|++.... ....+..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 75 5689999987643 2 22222 3456789999999999988877 7799999998221 22333333321
Q ss_pred --CCceEEEEEcCCCCEEEEEEcC-CeEEEEeCC--CCeEE---EeccCCCCeeEEEEeCCCCEEEEEe-CCCcEEEcC
Q 009059 476 --GNKFHSCVFHPTFPSLLVIGCY-ETLELWNMT--ENKTL---TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 545 (545)
Q Consensus 476 --~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~--~~~~~---~~~~h~~~V~~l~~spd~~~las~s-~Dg~I~iWd 545 (545)
......++++|++++|+++... +.|.+|+++ ++++. .+.........++++|+|++|+++. .++.|.+|+
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 1257889999999999888755 489999983 34433 2223345589999999999999887 456788773
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=1.2e-15 Score=147.39 Aligned_cols=228 Identities=15% Similarity=0.192 Sum_probs=187.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeE
Q 009059 307 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 386 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~ 386 (545)
.-..+.++.+|++|+.|+..|.|..+|+.+... ...+. -...|.++.|..+. .++|++ ....++|||-. |..+..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L-~~Ei~-v~Etv~Dv~~LHne-q~~AVA-QK~y~yvYD~~-GtElHC 205 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL-HFEIN-VMETVRDVTFLHNE-QFFAVA-QKKYVYVYDNN-GTELHC 205 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeeccccee-eeeee-hhhhhhhhhhhcch-HHHHhh-hhceEEEecCC-CcEEee
Confidence 456788999999999999999999999998764 33332 45678999998774 455444 47789999954 777888
Q ss_pred EeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC
Q 009059 387 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 387 ~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~ 465 (545)
++....+..+.|.|..-.|++++..|.+..-|+.+|+.+..+....+.+..++-+|-+..+-+|. .|+|.+|.....
T Consensus 206 lk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk-- 283 (545)
T KOG1272|consen 206 LKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK-- 283 (545)
T ss_pred hhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc--
Confidence 88888999999999966677777889999999999999999988888999999999999999998 999999998776
Q ss_pred cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 466 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 466 ~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
+.+..+-+|.++|.++++.++|.++++++.|..++|||++....+ ++.. ..+...+++|..| ++.++....|.||
T Consensus 284 -ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 284 -EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred -chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence 667778889999999999999999999999999999999987755 3332 4567788888655 3444455578888
Q ss_pred C
Q 009059 545 K 545 (545)
Q Consensus 545 d 545 (545)
.
T Consensus 360 ~ 360 (545)
T KOG1272|consen 360 K 360 (545)
T ss_pred h
Confidence 4
No 229
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.60 E-value=4.8e-13 Score=139.15 Aligned_cols=232 Identities=16% Similarity=0.132 Sum_probs=161.7
Q ss_pred CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCC
Q 009059 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 361 (545)
Q Consensus 285 g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d---g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~ 361 (545)
..|.++|..... ...+..+...+...+|+||+++|+.+..+ ..|++||+.++.. ..+..+...+.+++|+|+++
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 368888876443 34455566779999999999999987654 4799999987653 33344556677899999998
Q ss_pred cEEEEEcCCC--cEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC-C--eEEEEECCCCEEEEEecCCCCCEE
Q 009059 362 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 436 (545)
Q Consensus 362 ~ll~s~s~dg--~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d-g--~I~i~d~~~~~~~~~~~~h~~~I~ 436 (545)
.++++.+.++ .|++||+.++................|+|++.+|+..+.. + .|+++|+.+++.. .+..+...+.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 8887776554 5999999887655444433345577899999988877653 3 6888898877643 3433556678
Q ss_pred EEEEcCCCCEEEEEe-CC---cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCe
Q 009059 437 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 509 (545)
Q Consensus 437 ~l~~sp~g~~l~s~s-dg---~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~ 509 (545)
.+.|+|+|++|+.+. ++ .|.+||+.++.. ..+.. ........|+|++++|+....++ .+++++.....
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~----~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~ 400 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE----RVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF 400 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCe----EEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence 889999999998887 44 788999876421 12221 12334568999999988887765 56777766555
Q ss_pred EEEeccCCCCeeEEEE
Q 009059 510 TLTLSAHDKLVSSLAA 525 (545)
Q Consensus 510 ~~~~~~h~~~V~~l~~ 525 (545)
...+..+.+.+..++|
T Consensus 401 ~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 401 RARLPLGNGDVREPAW 416 (417)
T ss_pred eeECCCCCCCcCCCCC
Confidence 4445444555555555
No 230
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.60 E-value=8.2e-14 Score=130.28 Aligned_cols=252 Identities=17% Similarity=0.260 Sum_probs=190.9
Q ss_pred eeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc-CCCeEEEEec-cCCccEEEEEEcCCCCEEEEEeCCCe
Q 009059 251 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRT 328 (545)
Q Consensus 251 ~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~-~~~~~~~~l~-~h~~~V~~l~~sp~~~~l~t~s~dg~ 328 (545)
..+..+..++||.+.|+....-|-..-+++.+.|.+++||-- +.++.-..+. .-..+++++.+.++...|++|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 344456778999999999999998888999999999999954 3444443332 23567899999999999999999999
Q ss_pred EEEEECCCC---CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEE
Q 009059 329 VRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 405 (545)
Q Consensus 329 I~vwd~~~~---~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l 405 (545)
+.-+.+... ....+.+..|...|..+.|+...+. +++++.|..+.---.+.+..+..+......+++.+.-. +.
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~-V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEW-VLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA 168 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCcee-EEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence 998876532 1235677789999999999877554 44888887766444455555544433333333333322 45
Q ss_pred EEEECCCeEEEEEC--CCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEE
Q 009059 406 LAAAIENYISILDV--ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 482 (545)
Q Consensus 406 ~~~~~dg~I~i~d~--~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~ 482 (545)
++|...|.|.+..+ ..-..+.++.+|.+.+.+++|.+...+|.+|. |..+.+||+.... ....++.+|...|..+
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~--g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK--GTAYELQGHNDKVQAL 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc--ceeeeeccchhhhhhh
Confidence 56666676655544 44567889999999999999999999999999 8899999997653 4566788899999999
Q ss_pred EEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 483 VFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 483 ~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
...+--+.+++++.||.|.+||++.
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEeccc
Confidence 8888888899999999999999864
No 231
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.5e-13 Score=130.67 Aligned_cols=237 Identities=16% Similarity=0.171 Sum_probs=182.9
Q ss_pred CCccEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCCeee-----eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEE
Q 009059 304 HTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSL-----RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 376 (545)
Q Consensus 304 h~~~V~~l~~sp~~~--~l~t~s~dg~I~vwd~~~~~~~~-----~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lw 376 (545)
....|..++|.-+++ .|+.++.|..+..+.+......- ........+|..++... ..|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC---CEEEEEecCCcEEEE
Confidence 345677777765443 45555566677777776554311 13344566777777652 234488889999999
Q ss_pred ECCCCc----eeeEEeccCCeeEEEEeCCCCEEEE-EECC--CeEEEEECCCCEEEEEecCCC---------CCEEEEEE
Q 009059 377 SINNGS----CAGVFKCQSGATQMRFQPRLGRILA-AAIE--NYISILDVETQVCRLKLQGHK---------NQVHSVCW 440 (545)
Q Consensus 377 d~~~~~----~~~~~~~~~~v~~l~~sp~~~~l~~-~~~d--g~I~i~d~~~~~~~~~~~~h~---------~~I~~l~~ 440 (545)
..+.+. .+..+....++..+.-.+....+++ |+.. ..+.|||++..+.+..-+.-. -+++.+.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 988433 3445555677778887776666665 7777 899999999987666544321 25678889
Q ss_pred cCC--CCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE--Eecc
Q 009059 441 NTS--GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSA 515 (545)
Q Consensus 441 sp~--g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~ 515 (545)
-+. ...|++++ -+.|++||.+... .++..+.....+++++...|++++|+++..-+.+..||++.++.. .+.+
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccC--cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 887 78888888 8899999998654 677888888999999999999999999999999999999999988 4778
Q ss_pred CCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 516 HDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 516 h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
..+.|.+|..+|...+||++|-|..|+|+|
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 999999999999999999999999999987
No 232
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.60 E-value=3.1e-12 Score=129.05 Aligned_cols=262 Identities=11% Similarity=0.058 Sum_probs=171.3
Q ss_pred EE-EEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEE
Q 009059 277 LL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 355 (545)
Q Consensus 277 ~l-atg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~ 355 (545)
++ ++-..++.|.|.|..+.+.+..+......-..+.|+||++++++++.||.|.++|+.+.+. +..+.. .....+++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-v~~i~~-G~~~~~i~ 84 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-VATIKV-GGNPRGIA 84 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-EEEEE--SSEEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE-EEEEec-CCCcceEE
Confidence 44 4455689999999999999999986555445578999999999999999999999998875 666653 34578899
Q ss_pred EeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc--------CCeeEEEEeCCCCEEEEEECC-CeEEEEECCCCEEE-
Q 009059 356 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------SGATQMRFQPRLGRILAAAIE-NYISILDVETQVCR- 425 (545)
Q Consensus 356 ~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~--------~~v~~l~~sp~~~~l~~~~~d-g~I~i~d~~~~~~~- 425 (545)
++++|+++++++...+.+.++|.++.+.++.+... ..+..+..++....+++.-.| +.|.+.|......+
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 99999999988889999999999999999887642 246677788887767766664 89999998765322
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEee----CCCceEEEEEcCC----------CC
Q 009059 426 LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHPT----------FP 489 (545)
Q Consensus 426 ~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~----~~~~v~~~~~sp~----------~~ 489 (545)
..............|+|+++|++++. ++.|-++|..+. ..+..+.. |......+ .+|. +.
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~---k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~ 240 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG---KLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGY 240 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT---EEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSS
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccc---eEEEEeeccccccccccccc-cCCCcceEEeeccccc
Confidence 22333456788999999999988776 779999998876 33333321 22222221 1222 23
Q ss_pred EEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEE----eCCCcEEEcC
Q 009059 490 SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA----SHDKCVKIWK 545 (545)
Q Consensus 490 ~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~----s~Dg~I~iWd 545 (545)
..++.-..+.+.+||....+.+ .+...... ..+..+|++++|.+. ...+.|.|+|
T Consensus 241 ~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 241 FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp SEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred eecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence 3333333445667898898888 45544444 778889999999988 3446777765
No 233
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.2e-14 Score=143.02 Aligned_cols=216 Identities=19% Similarity=0.262 Sum_probs=159.3
Q ss_pred eEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCC-CCcEEEEEcCCCcEE
Q 009059 296 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIR 374 (545)
Q Consensus 296 ~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~ll~s~s~dg~I~ 374 (545)
.+...+.+|.+.|.|++|+.+|.+|++|+.|-.+.|||.-..+.....-.+|...|.++.|.|. ++.++++|+.|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3456788999999999999999999999999999999998766655567899999999999984 456888999999999
Q ss_pred EEECCCCc----------eeeEEe-ccCCeeEEEEeCCC-CEEEEEECCCeEEEEECCCCEEEE----------EecCCC
Q 009059 375 YWSINNGS----------CAGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRL----------KLQGHK 432 (545)
Q Consensus 375 lwd~~~~~----------~~~~~~-~~~~v~~l~~sp~~-~~l~~~~~dg~I~i~d~~~~~~~~----------~~~~h~ 432 (545)
+||+...+ ....+. +...|..++..|++ ..+.+++.||+|+-||++....-. .+...-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 99998422 122222 23457778888887 678899999999999998742111 111122
Q ss_pred CCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCC---------------cceEEEEee-C--------CC---ceEEEE
Q 009059 433 NQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSK---------------GECIHELSC-T--------GN---KFHSCV 483 (545)
Q Consensus 433 ~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~---------------~~~i~~~~~-~--------~~---~v~~~~ 483 (545)
-...|+.++|.. .+|++|+ |-..++||.+...+ ..|+.-+.. | .. .++-+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 356889999965 5777777 77999999532100 012222211 1 11 145668
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 484 FHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 484 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
|+|+|..|++.-....|+++|+..++..
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 9999999999888889999999887655
No 234
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=3.4e-13 Score=126.94 Aligned_cols=228 Identities=16% Similarity=0.178 Sum_probs=159.8
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC----
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---- 381 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~---- 381 (545)
-.+..++|++.-..++++..|-.|++||-.. +.+..........|+|++|-|.+...++.|.. +.|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 3467789999777789999999999999876 33222223345689999999988888877774 45999976421
Q ss_pred c--------eeeEE--eccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEE
Q 009059 382 S--------CAGVF--KCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 450 (545)
Q Consensus 382 ~--------~~~~~--~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~ 450 (545)
. +...+ ..+..|+.+.|.++|..+++++. +..|.|||..++..+.......+.+.-+.|+|||.+|+++
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 1 11122 23456999999999999998876 6799999999987665554456788999999999999999
Q ss_pred e-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC-eEEEEeCCCC----------eEEE------
Q 009059 451 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTEN----------KTLT------ 512 (545)
Q Consensus 451 s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-~I~iwd~~~~----------~~~~------ 512 (545)
. |+..++|.....- .+. ......+.|...+|+|+|++|+.+.... .|+-...... +.+.
T Consensus 257 t~davfrlw~e~q~w--t~e-rw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 257 TCDAVFRLWQENQSW--TKE-RWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred cccceeeeehhcccc--eec-ceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 8 9999999654321 111 2222345899999999999877665543 3332221111 0111
Q ss_pred ---ecc----CCCCeeEEEEeCCCCEEEEEeCC
Q 009059 513 ---LSA----HDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 513 ---~~~----h~~~V~~l~~spd~~~las~s~D 538 (545)
... -.+.+.+|+|.|.|.+||+.-..
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 111 13678899999999999987543
No 235
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.58 E-value=3.3e-13 Score=144.36 Aligned_cols=251 Identities=16% Similarity=0.218 Sum_probs=174.3
Q ss_pred EEcCCCeEEEEeccCCccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCe------eeeEeccCcccEEEEEEeCCCCc
Q 009059 290 WCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKED 362 (545)
Q Consensus 290 wd~~~~~~~~~l~~h~~~V~~l~~sp~~-~~l~t~s~dg~I~vwd~~~~~~------~~~~~~~h~~~V~~l~~~p~~~~ 362 (545)
|+. .|..+..+..|...|..++.++.. .+|++|+.||+|++|+...-.. ...++......+.++.+.+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 664 568889999999999999998755 9999999999999999864221 12344445678899999888766
Q ss_pred EEEEEcCCCcEEEEECCCCc-------eeeEEe--ccCCeeEE-EEeCC-CC-EEEEEECCCeEEEEECCCCEEEEEec-
Q 009059 363 LLCSCDNNSEIRYWSINNGS-------CAGVFK--CQSGATQM-RFQPR-LG-RILAAAIENYISILDVETQVCRLKLQ- 429 (545)
Q Consensus 363 ll~s~s~dg~I~lwd~~~~~-------~~~~~~--~~~~v~~l-~~sp~-~~-~l~~~~~dg~I~i~d~~~~~~~~~~~- 429 (545)
++ .++.||.|++.++.... +.+... ..+.+..+ +|... +. .++.++.-+.|..||++.......++
T Consensus 1113 ~A-v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FA-VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EE-EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 65 66889999999987521 111111 12223333 33332 23 57778888999999999876555443
Q ss_pred -CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe-eCCCceEEEEEcCCC---CEEEEEEc--CCeEE
Q 009059 430 -GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPTF---PSLLVIGC--YETLE 501 (545)
Q Consensus 430 -~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~-~~~~~v~~~~~sp~~---~~l~~~~~--dg~I~ 501 (545)
...+.|++++.+|.+.+++.|. .|.+.+||++-+ ..+.... .+..++..+..+|-. ...++++. .+.|.
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 3457899999999999999999 889999999865 3343332 344667777666544 34555544 55899
Q ss_pred EEeCCCCeEE-EeccC-------------------CCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 502 LWNMTENKTL-TLSAH-------------------DKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 502 iwd~~~~~~~-~~~~h-------------------~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+|++.++... .+... .-......+..-+.++.+|+.|..|+.||
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 9999988654 22211 11122233334456899999999999998
No 236
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.8e-12 Score=135.32 Aligned_cols=234 Identities=16% Similarity=0.049 Sum_probs=162.9
Q ss_pred cEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCc
Q 009059 286 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 362 (545)
Q Consensus 286 ~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d---g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 362 (545)
.|.++|.+.+.. ..+..+...+...+|+|||+.|+..+.+ ..|.+||+.++.. ..+....+.+....|+|+|+.
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence 477778775544 4455567789999999999999877644 3689999987653 333334445667899999998
Q ss_pred EEEEEcCCC--cEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-C--CeEEEEECCCCEEEEEecCCCCCEEE
Q 009059 363 LLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-E--NYISILDVETQVCRLKLQGHKNQVHS 437 (545)
Q Consensus 363 ll~s~s~dg--~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-d--g~I~i~d~~~~~~~~~~~~h~~~I~~ 437 (545)
++++...+| .|++||+.+++...............|+|+++.++..+. + ..|+++|+.+++...... .......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 887776665 688889998876554444444667889999998887765 3 368888988776433221 2233446
Q ss_pred EEEcCCCCEEEEEe--CC--cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCeE
Q 009059 438 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 510 (545)
Q Consensus 438 l~~sp~g~~l~s~s--dg--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~~ 510 (545)
..|+|+|++|+... ++ .|.+||+.++.. . .+.. ........|+|+|+.++..+.++ .|+++++.....
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~---~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-R---ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-E---EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 78999999998876 33 588899887632 1 2221 11223568999999988877653 688889876666
Q ss_pred EEeccCCCCeeEEEEeCC
Q 009059 511 LTLSAHDKLVSSLAASTV 528 (545)
Q Consensus 511 ~~~~~h~~~V~~l~~spd 528 (545)
..+..+.+.+...+|+|-
T Consensus 411 ~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 411 LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 555556667788888863
No 237
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.57 E-value=7.7e-14 Score=125.99 Aligned_cols=259 Identities=15% Similarity=0.195 Sum_probs=177.2
Q ss_pred CcccceeeeeecCCceeeEEEEeec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
.....++.+|...+.. ....++ .|...|+.+..-|+ ..|.+-+.|..+.+|++.....+.. |.-.++++.|.
T Consensus 31 g~~~G~V~~w~lqt~r---~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i---~Si~~nslgFC 103 (323)
T KOG0322|consen 31 GLSVGIVKMWVLQTER---DLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISI---HSIVVNSLGFC 103 (323)
T ss_pred ccccceEEEEEeecCc---cchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEE---eeeeccccccc
Confidence 3345678888877654 344566 67788999999987 4677888999999999986544432 44445555554
Q ss_pred CC-----CC----EEEEEeCCC-eEEEEECCCCCeeeeEe----ccCcccEEEEEEeCC--CCcEEEEEcCCCcEEEEEC
Q 009059 315 PS-----LS----RLATSSADR-TVRVWDTENPDYSLRTF----TGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSI 378 (545)
Q Consensus 315 p~-----~~----~l~t~s~dg-~I~vwd~~~~~~~~~~~----~~h~~~V~~l~~~p~--~~~ll~s~s~dg~I~lwd~ 378 (545)
+- ++ .++.-+... .+++-|...... +... .+..+.+++..+..+ ...++++|.++|.+.+||+
T Consensus 104 rfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tq-v~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~ 182 (323)
T KOG0322|consen 104 RFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ-VQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDL 182 (323)
T ss_pred cceeccCCCcchhheecCCcccchhhhhccCccce-eEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEc
Confidence 31 11 111111100 122222221111 1111 123467777775332 2446778889999999999
Q ss_pred CCCceeeEE-----------eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCC--E--EEEEecCCCCCEEEEEEcCC
Q 009059 379 NNGSCAGVF-----------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--V--CRLKLQGHKNQVHSVCWNTS 443 (545)
Q Consensus 379 ~~~~~~~~~-----------~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~--~--~~~~~~~h~~~I~~l~~sp~ 443 (545)
.++..+..+ .+..++.++.|.+.-..=+.++.+..+..|.+... . ....+.-....|..+.+-||
T Consensus 183 S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD 262 (323)
T KOG0322|consen 183 STGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPD 262 (323)
T ss_pred cCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccC
Confidence 987433322 24566888988876566667777788888887632 2 12223333457888999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 444 GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 444 g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
++++|+++ |+.||||+.++. ..+..++.|...|++++|+|+.+.+++++.|..|-+|++
T Consensus 263 ~KIlATAGWD~RiRVyswrtl---~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 263 GKILATAGWDHRIRVYSWRTL---NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CcEEeecccCCcEEEEEeccC---CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999 999999999888 677788889999999999999999999999999999986
No 238
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.55 E-value=4.3e-14 Score=131.23 Aligned_cols=222 Identities=17% Similarity=0.228 Sum_probs=160.1
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-
Q 009059 310 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK- 388 (545)
Q Consensus 310 ~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~- 388 (545)
-.+|+|+|+++|+++.- .+.|-|.++-+. .+.+. .-..|..+.|..+..++++....++.|.+|++...+-...+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~-~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL-HQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH-HHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 36799999999999765 677777776442 22222 346788899999989999999999999999999887776665
Q ss_pred ccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCc
Q 009059 389 CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 466 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~ 466 (545)
...++..++|+|+|+.++..+. +-.|.+|.+.+.+.... .-.+..+..++|+|+|++.+..+ .+..-.+.+...+..
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 4567899999999987776665 88999999998876553 22345678999999999999888 322222222222223
Q ss_pred ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 467 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 467 ~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
..+..+....-..+.+.|+|||..|++ ||---.-.+-...-.-.+..++|+|.+++|+.|+.|+.++|-
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhh
Confidence 444555555666788999999986554 442111111111122457889999999999999999998873
No 239
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=2.8e-12 Score=133.59 Aligned_cols=234 Identities=15% Similarity=0.095 Sum_probs=158.4
Q ss_pred cEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCc
Q 009059 286 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 362 (545)
Q Consensus 286 ~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d-g--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 362 (545)
.|.++|...... ..+..+...+.+..|+|||++|+..+.+ + .|.+||+.+++. ..+....+......|+|+++.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCE
Confidence 567778665443 3445567788999999999998876543 2 588889887653 223222334457899999998
Q ss_pred EEEEEcCCCc--EEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-C--CeEEEEECCCCEEEEEecCCCCCEEE
Q 009059 363 LLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-E--NYISILDVETQVCRLKLQGHKNQVHS 437 (545)
Q Consensus 363 ll~s~s~dg~--I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-d--g~I~i~d~~~~~~~~~~~~h~~~I~~ 437 (545)
++++.+.+|. |++||+.+++...............|+|++..++..+. + ..|+++|+.+++..... .+......
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 8877777775 88889988776554444445677899999998877664 3 36888888877644322 12223345
Q ss_pred EEEcCCCCEEEEEe--CC--cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCeE
Q 009059 438 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 510 (545)
Q Consensus 438 l~~sp~g~~l~s~s--dg--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~~ 510 (545)
.+|+|+|++|+... ++ .|.++|+.++.. ..+... .......|+|+++.|+....++ .+++++.+....
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~----~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM----QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCe----EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 78999999988876 34 466677776532 112211 1223457999999888776654 588889866655
Q ss_pred EEeccCCCCeeEEEEeCC
Q 009059 511 LTLSAHDKLVSSLAASTV 528 (545)
Q Consensus 511 ~~~~~h~~~V~~l~~spd 528 (545)
..+..+.+.+...+|+|-
T Consensus 430 ~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 566666677888888873
No 240
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.51 E-value=1.6e-12 Score=119.25 Aligned_cols=145 Identities=18% Similarity=0.347 Sum_probs=106.6
Q ss_pred eeEEEEeCCCCEEEEEEC----------CCeEEEEEC--CCCEEEEEecC-CCCCEEEEEEcCCCCEEEEEe---CCcEE
Q 009059 393 ATQMRFQPRLGRILAAAI----------ENYISILDV--ETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS---DELVR 456 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~----------dg~I~i~d~--~~~~~~~~~~~-h~~~I~~l~~sp~g~~l~s~s---dg~I~ 456 (545)
-..+.|++.|.+|++-.. -+...+|.+ ... ....+.- ..++|.+++|+|+|+.+++.. +..|.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 346788888888776544 123444544 332 2333322 345799999999998876553 56999
Q ss_pred EEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC---CeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEE
Q 009059 457 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA 533 (545)
Q Consensus 457 vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d---g~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~la 533 (545)
+||++ . ..+..+. ...+..+.|+|+|++|++++.+ |.|.+||+++.+.+....|.. ++.++|+|||++|+
T Consensus 87 lyd~~-~---~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 87 LYDVK-G---KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLA 159 (194)
T ss_pred EEcCc-c---cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEE
Confidence 99996 2 4555553 5678899999999999998754 579999999888886655554 78999999999999
Q ss_pred EEeC------CCcEEEcC
Q 009059 534 SASH------DKCVKIWK 545 (545)
Q Consensus 534 s~s~------Dg~I~iWd 545 (545)
++.. |+.++||+
T Consensus 160 ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWS 177 (194)
T ss_pred EEEeccceeccccEEEEE
Confidence 9875 77889985
No 241
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.3e-11 Score=128.87 Aligned_cols=222 Identities=16% Similarity=0.156 Sum_probs=149.9
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEE-EeCCC--eEE
Q 009059 257 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADR--TVR 330 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~latg~~d---g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t-~s~dg--~I~ 330 (545)
+.+..|...+...+|+|||+.|+..+.+ ..|.+|++.+++... +....+.+...+|+|||+.|+. ...+| .|.
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 3455677789999999999999877644 368999998876543 3333344567899999998874 44455 688
Q ss_pred EEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC--cEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEE
Q 009059 331 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 408 (545)
Q Consensus 331 vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg--~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~ 408 (545)
+||+.++. ...+..+........|+|+++.++++...+| .|+++|+.+++...............|+|+++.++..
T Consensus 271 ~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 271 VMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred EEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence 88998765 3445556666777899999988887766554 5777888877754433222334467899999998887
Q ss_pred ECC-C--eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CC--cEEEEEcCCCCCcceEEEEeeCCCceEE
Q 009059 409 AIE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHS 481 (545)
Q Consensus 409 ~~d-g--~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg--~I~vwd~~~~~~~~~i~~~~~~~~~v~~ 481 (545)
..+ + .|.+||+.++....... ........|+|+|+.|+... ++ .|.++++... ....+....+.+..
T Consensus 349 ~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~~ 422 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVRE 422 (430)
T ss_pred EccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcCC
Confidence 753 3 58899998876533222 22223568999999988776 33 5667776432 22233334455666
Q ss_pred EEEcCC
Q 009059 482 CVFHPT 487 (545)
Q Consensus 482 ~~~sp~ 487 (545)
.+|+|-
T Consensus 423 p~ws~~ 428 (430)
T PRK00178 423 PSWSPY 428 (430)
T ss_pred CccCCC
Confidence 667653
No 242
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.51 E-value=4.5e-13 Score=131.99 Aligned_cols=193 Identities=17% Similarity=0.257 Sum_probs=134.9
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEEEe----ccCCccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeeeEeccC
Q 009059 273 PDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGH 347 (545)
Q Consensus 273 pdg~~latg~~dg~I~lwd~~~~~~~~~l----~~h~~~V~~l~~sp~-~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h 347 (545)
+.+--|+.|-..|.|.+.|....+..+.+ .-....|+|+.|-|. ...++.+-.+|.+.+||.+..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~---------- 252 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV---------- 252 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc----------
Confidence 35556777777888988886552221111 113477999999984 456777788999999987321
Q ss_pred cccEEEEE--EeCCCCcEEEEEcCCCcEEEEECCCCceeeEE-eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE
Q 009059 348 STTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 424 (545)
Q Consensus 348 ~~~V~~l~--~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~ 424 (545)
...+... ..+++..+-+--+.. ..+..++..+ .....+..++|+|+|.+|++.+.||.++|||..+.+.
T Consensus 253 -~~~t~p~~~~~k~~~~f~i~t~ks-------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eL 324 (636)
T KOG2394|consen 253 -CGATAPSYQALKDGDQFAILTSKS-------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQEL 324 (636)
T ss_pred -ccCCCCcccccCCCCeeEEeeeec-------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHH
Confidence 1111111 122322222111100 0111222211 2235789999999999999999999999999999887
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcC
Q 009059 425 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 486 (545)
Q Consensus 425 ~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp 486 (545)
+..++..-+...|++|+|||+||++|+ |+.|.||.+... +.+..-.+|..+|..++|.|
T Consensus 325 lg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er---RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 325 LGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER---RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc---eEEEeccccccceeeEeecc
Confidence 777777778899999999999999999 999999999776 77888889999999999983
No 243
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=2.2e-10 Score=109.00 Aligned_cols=268 Identities=12% Similarity=0.099 Sum_probs=186.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCC--CeEEE--EeccCCccEEEEEEcCCCCEEEEEeC-CCeEE
Q 009059 259 IPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTES--FTVKS--TLEEHTQWITDVRFSPSLSRLATSSA-DRTVR 330 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg~~latg~~---dg~I~lwd~~~--~~~~~--~l~~h~~~V~~l~~sp~~~~l~t~s~-dg~I~ 330 (545)
+-.+.+.++-|+|+|+.+.|.++.. +|.|..|.++. |++.. .......+-+.+++++++++|+++.. -|.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 3456677899999999999988865 47787777664 54432 22222334488999999999999876 57999
Q ss_pred EEECCCCCeee--eEeccCccc----------EEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee----EEeccCCee
Q 009059 331 VWDTENPDYSL--RTFTGHSTT----------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG----VFKCQSGAT 394 (545)
Q Consensus 331 vwd~~~~~~~~--~~~~~h~~~----------V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~----~~~~~~~v~ 394 (545)
++-+....... .....|.+. +....+.|+++.+++..-.--.|.+|++..+.... .++...+..
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR 194 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR 194 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence 99986543211 122335444 88899999987666444333469999999776543 234556789
Q ss_pred EEEEeCCCCEEEEEEC-CCeEEEEECCCC-EEEEEecC---------CCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcC
Q 009059 395 QMRFQPRLGRILAAAI-ENYISILDVETQ-VCRLKLQG---------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIG 461 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~~-dg~I~i~d~~~~-~~~~~~~~---------h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~ 461 (545)
.+.|+|++++.++.+. +++|.+|..... ..+..++. -......|.++++|++|.++. .+.|.+|.+.
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 9999999998888776 899999998873 22222221 234677899999999999988 4489999887
Q ss_pred CCCC-cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC-eEEEEeC--CCCeEEEec--cCCCCeeEEEEe
Q 009059 462 SGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM--TENKTLTLS--AHDKLVSSLAAS 526 (545)
Q Consensus 462 ~~~~-~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-~I~iwd~--~~~~~~~~~--~h~~~V~~l~~s 526 (545)
.... ...+.....+....+...|.+.+++|+++..++ .|.+|.+ .++++..+. .......||.|.
T Consensus 275 ~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 275 PDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 5432 334444445555688999999999999999876 7888765 455554222 334445566653
No 244
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.49 E-value=5e-11 Score=117.23 Aligned_cols=273 Identities=16% Similarity=0.220 Sum_probs=192.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCC---------------CcEEEEEcCCCeEEEEeccCCcc--EE-EEEEcCCCCEEEEEeC
Q 009059 264 SKVESCHFSPDGKLLATGGHD---------------KKAVLWCTESFTVKSTLEEHTQW--IT-DVRFSPSLSRLATSSA 325 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~d---------------g~I~lwd~~~~~~~~~l~~h~~~--V~-~l~~sp~~~~l~t~s~ 325 (545)
..|.-+.|+|.++||.+-... +.+.+||+.++..+..+.....+ .+ -+.|+-+.+|+|-. .
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence 458899999999999996543 35999999999999998876665 55 68899888887765 3
Q ss_pred CCeEEEEECCCCCeeeeEeccC-cccEEEEEEeCCCCc-EEEE-----EcCCCcEEEEECCCCceeeEEec-cCCeeEEE
Q 009059 326 DRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKED-LLCS-----CDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 397 (545)
Q Consensus 326 dg~I~vwd~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~-ll~s-----~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~ 397 (545)
...++|+++ ++......+... ...|....|+|.++. .||. ....+.+++|.+..+..+..... ...-..+.
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk 229 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK 229 (561)
T ss_pred cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence 446999997 333322222222 256888888887432 2222 34577899999986666554332 22345688
Q ss_pred EeCCCCEEEEEE-----------CCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe---CCcEEEEEcCCC
Q 009059 398 FQPRLGRILAAA-----------IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSG 463 (545)
Q Consensus 398 ~sp~~~~l~~~~-----------~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s---dg~I~vwd~~~~ 463 (545)
|.+.|.++++-. .+..++++++....+.... ...++|...+|.|.++.+++.+ +-.+.++|++..
T Consensus 230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred EecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc
Confidence 999888876533 1356889998855444433 5678999999999987766655 669999999864
Q ss_pred CCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEe----
Q 009059 464 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS---- 536 (545)
Q Consensus 464 ~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s---- 536 (545)
. .+......-..+.|+|.+++++.++-++ .|.+||..+...+.-.-......-+.|+||+.++.+..
T Consensus 309 ----l--~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 309 ----L--RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred ----e--EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcc
Confidence 1 2233455667789999999999988875 89999998876663221223344568999999887764
Q ss_pred --CCCcEEEcC
Q 009059 537 --HDKCVKIWK 545 (545)
Q Consensus 537 --~Dg~I~iWd 545 (545)
.|..|+|||
T Consensus 383 ~~~Dn~i~l~~ 393 (561)
T COG5354 383 LRVDNSIKLWD 393 (561)
T ss_pred cccCcceEEEE
Confidence 467899996
No 245
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=2.9e-13 Score=131.85 Aligned_cols=270 Identities=15% Similarity=0.182 Sum_probs=206.3
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEcCC-CeE--EEEeccCCccEE
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTES-FTV--KSTLEEHTQWIT 309 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp--dg~~latg~~dg~I~lwd~~~-~~~--~~~l~~h~~~V~ 309 (545)
..+.|+.+-+|||..+... .....+|...|....|-| +..-|++++.||.|++=.+.. +.. ...+..|.++|.
T Consensus 159 SgSDD~~vv~WdW~~~~~~--l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vh 236 (559)
T KOG1334|consen 159 SGSDDLQVVVWDWVSGSPK--LSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVH 236 (559)
T ss_pred ccCccceEEeehhhccCcc--cccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccc
Confidence 4567889999999988643 344568999999999988 445799999999999976643 332 355677999999
Q ss_pred EEEEcCCC-CEEEEEeCCCeEEEEECCCCCe--eeeEeccCcc---cEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce
Q 009059 310 DVRFSPSL-SRLATSSADRTVRVWDTENPDY--SLRTFTGHST---TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 310 ~l~~sp~~-~~l~t~s~dg~I~vwd~~~~~~--~~~~~~~h~~---~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~ 383 (545)
-++.-|+. .-|.+++.|+.+.-+|+..... .+.....+.. ..+.++.+|...+.+++++.|-.+++||.+.-..
T Consensus 237 klav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~ 316 (559)
T KOG1334|consen 237 KLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDK 316 (559)
T ss_pred eeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhh
Confidence 99999864 4689999999999999876432 1222233333 5788999999888999999999999999874221
Q ss_pred ------eeEE-------eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC--C----------EEEE-EecCCCC--CE
Q 009059 384 ------AGVF-------KCQSGATQMRFQPRLGRILAAAIENYISILDVET--Q----------VCRL-KLQGHKN--QV 435 (545)
Q Consensus 384 ------~~~~-------~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~--~----------~~~~-~~~~h~~--~I 435 (545)
+..+ .....|++++|+.++..++++..|-.|++|.-.- + ..+. .+++|.. .|
T Consensus 317 e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TV 396 (559)
T KOG1334|consen 317 EENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTV 396 (559)
T ss_pred ccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccccc
Confidence 1222 1234589999999999999999999999995432 2 1122 3677764 57
Q ss_pred EEEEE-cCCCCEEEEEeC-CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe
Q 009059 436 HSVCW-NTSGEYLASVSD-ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 436 ~~l~~-sp~g~~l~s~sd-g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 509 (545)
..+.| -|...|+++|+| |.|.||+-.++ +.+..+.+...-|+|+.-+|.-+.|+++|-|..|+||--.+.+
T Consensus 397 KgVNFfGPrsEyVvSGSDCGhIFiW~K~t~---eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 397 KGVNFFGPRSEYVVSGSDCGHIFIWDKKTG---EIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred ceeeeccCccceEEecCccceEEEEecchh---HHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 77765 588899999995 59999998877 5566666666689999999999999999999999999874433
No 246
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.48 E-value=1.7e-12 Score=137.38 Aligned_cols=268 Identities=16% Similarity=0.218 Sum_probs=186.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec------cCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~------~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
|-+++++..+-. +||..|. --.|.+||+..+..+..+. .|...=.-. -.+.+++++..-+.+..=+..
T Consensus 6 ~~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~---l~~~~~v~~~~~~~v~~~~~~ 79 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK---LLSGKIVTCAKSDEVYVKEAS 79 (967)
T ss_pred ccccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce---eccceEEEEEeecceeecchh
Confidence 334555666554 5666654 4579999998877665442 331000000 023355555544434333222
Q ss_pred CCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCee-----EEEEeCCCCEEEEEEC
Q 009059 336 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-----QMRFQPRLGRILAAAI 410 (545)
Q Consensus 336 ~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~-----~l~~sp~~~~l~~~~~ 410 (545)
. ..+....+.|....+..+.. .++....+..+.+||...+.....+.+..... -+-++++.-++++++.
T Consensus 80 ~-----~~~~~~s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv 153 (967)
T KOG0974|consen 80 N-----QIIERFSDWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSV 153 (967)
T ss_pred h-----hhhhhccccccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccc
Confidence 1 11222233444444444433 34455567889999999887777666544422 2334555556778888
Q ss_pred CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCC
Q 009059 411 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 489 (545)
Q Consensus 411 dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~ 489 (545)
-+.|.+|+....+....+.+|.+.|.++.|+.+|+++++.+ |..+++|++.+.+... ...-+|...++.++|+|+
T Consensus 154 ~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n-- 229 (967)
T KOG0974|consen 154 FGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN-- 229 (967)
T ss_pred cccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--
Confidence 99999999984444446889999999999999999999999 8899999999875433 355579999999999999
Q ss_pred EEEEEEcCCeEEEEeCCCCeEEEeccCC-CCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 490 SLLVIGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 490 ~l~~~~~dg~I~iwd~~~~~~~~~~~h~-~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+++++.|-+.++|+.+....-.+..|. ..|+.++..++...++|++.||.+++|+
T Consensus 230 ~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 7999999999999987666655666665 5799999999999999999999999996
No 247
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.47 E-value=3.6e-10 Score=111.69 Aligned_cols=256 Identities=11% Similarity=0.058 Sum_probs=168.3
Q ss_pred CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCCeeeeEeccC-------
Q 009059 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH------- 347 (545)
Q Consensus 285 g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~----------dg~I~vwd~~~~~~~~~~~~~h------- 347 (545)
+.|.+.|..+++.+..+.....+- .+ ++||++.|+++.. +..|.+||..+.+. +..+.--
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccCCCchhhc
Confidence 899999999999998886544333 24 9999998887765 78999999998875 4444321
Q ss_pred cccEEEEEEeCCCCcEEEEEcC-CCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC-CEE-
Q 009059 348 STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET-QVC- 424 (545)
Q Consensus 348 ~~~V~~l~~~p~~~~ll~s~s~-dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~-~~~- 424 (545)
......++++|+|+.++++--. +..|.+.|+.+++.+..+.......-...+.. .+++-+.||......+.+ ++.
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~--~~~~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAND--TFFMHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCC--ccEEEeecCceEEEEecCCCceE
Confidence 2234478899999888766534 88999999999999998886553333332222 222334455444433322 211
Q ss_pred EEE---ecCCCCCEE-EEEEcC-CCCEEEEEeCCcEEEEEcCCCCC--cceEEEEee-------CCCceEEEEEcCCCCE
Q 009059 425 RLK---LQGHKNQVH-SVCWNT-SGEYLASVSDELVRVWSIGSGSK--GECIHELSC-------TGNKFHSCVFHPTFPS 490 (545)
Q Consensus 425 ~~~---~~~h~~~I~-~l~~sp-~g~~l~s~sdg~I~vwd~~~~~~--~~~i~~~~~-------~~~~v~~~~~sp~~~~ 490 (545)
... +.....++. .-.|.+ +|+++....+|.|.+.|+..... ...+..+.. ....+.-++++++++.
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ 261 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR 261 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence 111 111001100 003345 88988888899999999754321 112222111 2233445999999999
Q ss_pred EEEEE----------cCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCC-EEEEEe-CCCcEEEcC
Q 009059 491 LLVIG----------CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 545 (545)
Q Consensus 491 l~~~~----------~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~-~las~s-~Dg~I~iWd 545 (545)
+++.. ..+.|.++|..+++.+....-...+..|+++||++ +|++.. .++.|.|.|
T Consensus 262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 98853 22489999999999995555567899999999999 777666 577788765
No 248
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=4.5e-12 Score=125.91 Aligned_cols=237 Identities=15% Similarity=0.190 Sum_probs=171.3
Q ss_pred cCCccEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEE-eCCCCcEEEEEcCCCcEEEEECCC
Q 009059 303 EHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 303 ~h~~~V~~l~~sp~~~~l-~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~-~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
+|...-+.|..+|||+|+ ++|..--.|++||+.+-. ++.-......+..+.. +.|-...+ .--.|.+|-+...-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiLsDD~SK~v-~L~~DR~IefHak~- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSDDYSKSV-FLQNDRTIEFHAKY- 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce--eeeeecccccceeEEEeccchhhhe-EeecCceeeehhhc-
Confidence 477778999999999985 566678899999998644 3322322334444433 33322233 33347777654322
Q ss_pred CceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEE
Q 009059 381 GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 459 (545)
Q Consensus 381 ~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd 459 (545)
..-..+..+.....++++.-.--|++++....|+-++++.|..+..+....+.++++..++-..+|++|+ +|.|.+||
T Consensus 125 -G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 125 -GRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred -CeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 2223333445556777776666788999999999999999999999988889999999999999999999 99999999
Q ss_pred cCCCCCcceEE---EEeeCC-----CceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCC--CCeeEEEEeCC-
Q 009059 460 IGSGSKGECIH---ELSCTG-----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHD--KLVSSLAASTV- 528 (545)
Q Consensus 460 ~~~~~~~~~i~---~~~~~~-----~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~--~~V~~l~~spd- 528 (545)
.+.......+. .+..+. ..|+++.|+.+|-.+++|...|.+.|||++..+++....|. -+|..+.|.+.
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC
Confidence 98763322221 111122 34999999999999999999999999999999999777675 57888899765
Q ss_pred -CCEEEEEeCCCcEEEcC
Q 009059 529 -NGMVASASHDKCVKIWK 545 (545)
Q Consensus 529 -~~~las~s~Dg~I~iWd 545 (545)
...|++.. ...++|||
T Consensus 284 ~q~~v~S~D-k~~~kiWd 300 (703)
T KOG2321|consen 284 QQNKVVSMD-KRILKIWD 300 (703)
T ss_pred CCceEEecc-hHHhhhcc
Confidence 34566653 46799997
No 249
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1.8e-11 Score=127.64 Aligned_cols=220 Identities=18% Similarity=0.200 Sum_probs=146.0
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEE-EeCCCe--EEE
Q 009059 258 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRV 331 (545)
Q Consensus 258 ~l~~H~~~V~~l~~spdg~~latg~~d---g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t-~s~dg~--I~v 331 (545)
.+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++.... ..........+|+|||+.|+. .+.+|. |.+
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 344566788999999999999877543 2588899988765332 222333457899999998775 455664 777
Q ss_pred EECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC--cEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEE
Q 009059 332 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 409 (545)
Q Consensus 332 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg--~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~ 409 (545)
||+.++. ...+..+........|+|++..++++...++ .|+++|+.+++...............|+|++++++..+
T Consensus 291 ~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 291 VDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 7887654 4455556566778899999998887776555 47777887776544322222344578999999988776
Q ss_pred CC-C--eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CC--cEEEEEcCCCCCcceEEEEeeCCCceEEE
Q 009059 410 IE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSC 482 (545)
Q Consensus 410 ~d-g--~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~ 482 (545)
.+ + .|.++|+.++.... +... .......|+|+|+.|+... ++ .+++++.. + .....+......+...
T Consensus 369 ~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G---~~~~~l~~~~g~~~~p 442 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G---RFKARLPAGQGEVKSP 442 (448)
T ss_pred ecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-C---CceEECcCCCCCcCCC
Confidence 53 3 56778888876533 2222 1223457999999888766 33 47777763 3 2333444444556677
Q ss_pred EEcC
Q 009059 483 VFHP 486 (545)
Q Consensus 483 ~~sp 486 (545)
+|+|
T Consensus 443 ~Wsp 446 (448)
T PRK04792 443 AWSP 446 (448)
T ss_pred ccCC
Confidence 7776
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=4.1e-11 Score=123.97 Aligned_cols=238 Identities=14% Similarity=0.112 Sum_probs=157.2
Q ss_pred CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCE--E-EEEeCCC--eEEEEECCCCCeeeeEeccCcccEEEEEEeCC
Q 009059 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR--L-ATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 359 (545)
Q Consensus 285 g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~--l-~t~s~dg--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~ 359 (545)
+.|.+.|.+.+... .+......+..-+|+|||+. + ++...+| .|.+.++..+.. +.+....+......|+||
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECCC
Confidence 36777777655443 34445556778899999975 2 2444444 577778876543 333434555667899999
Q ss_pred CCcEEEEEcCCC----cEEEEECCCC---ceeeEEecc-CCeeEEEEeCCCCEEEEEEC-CCe--EEEEECCC-CEEEEE
Q 009059 360 KEDLLCSCDNNS----EIRYWSINNG---SCAGVFKCQ-SGATQMRFQPRLGRILAAAI-ENY--ISILDVET-QVCRLK 427 (545)
Q Consensus 360 ~~~ll~s~s~dg----~I~lwd~~~~---~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~-dg~--I~i~d~~~-~~~~~~ 427 (545)
|+.++++...+| .+.+|++..+ +........ .......|+|+|..|+..+. +|. |+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 998887775433 3444777653 333333222 23467899999998887764 554 55556542 233344
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEe--CC--cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC---CeE
Q 009059 428 LQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETL 500 (545)
Q Consensus 428 ~~~h~~~I~~l~~sp~g~~l~s~s--dg--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d---g~I 500 (545)
+..+...+....|+|||++|+... ++ .|.+||+.++.. ..+......+....|+|+++.|+....+ ..|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 544556778899999999988766 23 799999987732 2222223456778999999988866543 379
Q ss_pred EEEeCCCCeEEEeccCCCCeeEEEEeCCC
Q 009059 501 ELWNMTENKTLTLSAHDKLVSSLAASTVN 529 (545)
Q Consensus 501 ~iwd~~~~~~~~~~~h~~~V~~l~~spd~ 529 (545)
++||+.+++...+....+.+...+|+|-.
T Consensus 398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 398 YLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCEEEeecCCCcccCceecCCC
Confidence 99999988877666566667788898753
No 251
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.47 E-value=8.7e-12 Score=114.46 Aligned_cols=153 Identities=17% Similarity=0.259 Sum_probs=110.6
Q ss_pred EEEEcCCCCEEEEEeC----------CCcEEEEEcCC-CeEEEEecc-CCccEEEEEEcCCCCEEEEEe--CCCeEEEEE
Q 009059 268 SCHFSPDGKLLATGGH----------DKKAVLWCTES-FTVKSTLEE-HTQWITDVRFSPSLSRLATSS--ADRTVRVWD 333 (545)
Q Consensus 268 ~l~~spdg~~latg~~----------dg~I~lwd~~~-~~~~~~l~~-h~~~V~~l~~sp~~~~l~t~s--~dg~I~vwd 333 (545)
.+.|+++|++|++-.. -+...||.++. ......+.- ..++|.+++|+|+++.||+.. .++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 4889999988766433 13355555522 233334432 345799999999999876653 567999999
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEc--CCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI- 410 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s--~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~- 410 (545)
++ .. .+..+ +...+..+.|+|+|..++++|. ..|.|.+||+++.+.+....+. .++.++|+|+|.+++++..
T Consensus 90 ~~-~~-~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 90 VK-GK-KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTS 164 (194)
T ss_pred Cc-cc-EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEec
Confidence 97 22 24444 3567889999999987775552 3578999999998888887754 4789999999999998874
Q ss_pred -----CCeEEEEECCCCEEEE
Q 009059 411 -----ENYISILDVETQVCRL 426 (545)
Q Consensus 411 -----dg~I~i~d~~~~~~~~ 426 (545)
|+.++||+.. |+.+.
T Consensus 165 ~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred cceeccccEEEEEec-CeEeE
Confidence 7889999985 44444
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=3.6e-11 Score=124.37 Aligned_cols=213 Identities=13% Similarity=0.114 Sum_probs=141.0
Q ss_pred eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCc--EEEEEcCCC--cEEEEECCCCceeeEEeccCCeeEEEEeCCCC
Q 009059 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED--LLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 403 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~--ll~s~s~dg--~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~ 403 (545)
.|.+.|.+... .+.+......+..-.|+|||.. ++++...+| .|++.++.+++........+......|+|+|+
T Consensus 166 ~l~~~d~dG~~--~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDGQN--LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCCCC--ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence 56666766433 4445555667788899999876 333554443 58888998887666555556667789999999
Q ss_pred EEEEEEC-CC----eEEEEECCCC---EEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEE--EcCCCCCcceEEE
Q 009059 404 RILAAAI-EN----YISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVW--SIGSGSKGECIHE 471 (545)
Q Consensus 404 ~l~~~~~-dg----~I~i~d~~~~---~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vw--d~~~~~~~~~i~~ 471 (545)
.|+.... +| .+.+|++..+ ........+.......+|+|||+.|+..+ ++...+| ++.... .....
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~~ 321 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPRL 321 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceEE
Confidence 9887664 22 3444676652 33333333333456789999999888766 5544444 443211 12233
Q ss_pred EeeCCCceEEEEEcCCCCEEEEEEcC---CeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeC-C--CcEEEc
Q 009059 472 LSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-D--KCVKIW 544 (545)
Q Consensus 472 ~~~~~~~v~~~~~sp~~~~l~~~~~d---g~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~-D--g~I~iW 544 (545)
+......+....|+|+|+.|+....+ ..|++||+.+++...+......+....|+|||++|+.... + ..|.+|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 33344566788999999998877654 3799999999988766555556788999999998875443 2 345554
No 253
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=5e-10 Score=106.58 Aligned_cols=260 Identities=10% Similarity=0.129 Sum_probs=181.7
Q ss_pred CCcEEEEEcCCC--eEE-EEeccCCccEEEEEEcCCCCEEEEEeCC---CeEEEEECCC--CCeeee-EeccCcccEEEE
Q 009059 284 DKKAVLWCTESF--TVK-STLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTEN--PDYSLR-TFTGHSTTVMSL 354 (545)
Q Consensus 284 dg~I~lwd~~~~--~~~-~~l~~h~~~V~~l~~sp~~~~l~t~s~d---g~I~vwd~~~--~~~~~~-~~~~h~~~V~~l 354 (545)
+.-|++|++.+. +.. ..+-.+...++-|+|+|+.++|+++..+ |.|..|.++. +...+. .......+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 467999998732 221 1223466778999999999999998654 6788887775 332211 111122344889
Q ss_pred EEeCCCCcEEEEEcCCCcEEEEECCC-Ccee---eEEeccCC----------eeEEEEeCCCCEEEEEEC-CCeEEEEEC
Q 009059 355 DFHPSKEDLLCSCDNNSEIRYWSINN-GSCA---GVFKCQSG----------ATQMRFQPRLGRILAAAI-ENYISILDV 419 (545)
Q Consensus 355 ~~~p~~~~ll~s~s~dg~I~lwd~~~-~~~~---~~~~~~~~----------v~~l~~sp~~~~l~~~~~-dg~I~i~d~ 419 (545)
++++++..++++....|.|.++-++. |... ..+.+.+. +....+.|+++++++... ...|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999988887777889999999965 4332 33444333 778899999888888775 568999999
Q ss_pred CCCEEEE----EecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCC-CCcceEEEEee------CCCceEEEEEcC
Q 009059 420 ETQVCRL----KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSC------TGNKFHSCVFHP 486 (545)
Q Consensus 420 ~~~~~~~----~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~-~~~~~i~~~~~------~~~~v~~~~~sp 486 (545)
..+.... .+ ........|.|+|++++..+.. +++|.+|..... ...+.+..+.. .......+.+++
T Consensus 175 ~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 175 DDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred ccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 9775432 22 2455678999999999988887 899999999874 22234443332 235567889999
Q ss_pred CCCEEEEEEcCC-eEEEEeCCC--CeEE---EeccCCCCeeEEEEeCCCCEEEEEeCCC-cEEEc
Q 009059 487 TFPSLLVIGCYE-TLELWNMTE--NKTL---TLSAHDKLVSSLAASTVNGMVASASHDK-CVKIW 544 (545)
Q Consensus 487 ~~~~l~~~~~dg-~I~iwd~~~--~~~~---~~~~h~~~V~~l~~spd~~~las~s~Dg-~I~iW 544 (545)
+|++|+++.... .|.+|.+.. +++. ....+......+.|++++++|+++..|+ .|.+|
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 999888876543 788887754 4333 2233455588999999999999998764 46554
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.45 E-value=4e-11 Score=124.73 Aligned_cols=205 Identities=15% Similarity=0.185 Sum_probs=147.7
Q ss_pred CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC--CcEEEEECCCCceeeEEeccCCeeEEEEeCCCCE
Q 009059 327 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 404 (545)
Q Consensus 327 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d--g~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~ 404 (545)
..|.++|..... .+.+..+...+....|+|+++.++++...+ ..|++||+.+++..........+..+.|+|+++.
T Consensus 170 ~~l~~~d~~g~~--~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN--PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC--CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 367888876433 455556777899999999998887665443 4799999998876555555556777999999988
Q ss_pred EEEEEC-C--CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CC--cEEEEEcCCCCCcceEEEEeeCCC
Q 009059 405 ILAAAI-E--NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGN 477 (545)
Q Consensus 405 l~~~~~-d--g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg--~I~vwd~~~~~~~~~i~~~~~~~~ 477 (545)
|++... + ..|++||+.++... .+..+........|+|+|+.|+..+ ++ .|+++|+.++. ...+..+..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~ 322 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGG 322 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCC
Confidence 876543 3 36999999887543 3444555556789999999887766 33 68888877652 223333456
Q ss_pred ceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCC
Q 009059 478 KFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 478 ~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg 539 (545)
.+....|+|++++|+.+..++ .|.+||+.++....+... .......|+||+++|+.++.++
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 677889999999999988876 899999988765544332 2345678999999888877654
No 255
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=1.8e-12 Score=127.88 Aligned_cols=281 Identities=14% Similarity=0.191 Sum_probs=195.1
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-------CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~-------~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg 327 (545)
.+..+.||...|..++--.+.+-+++++.|++|++|.++. ..+..++..|+.+|.++.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 3567889999999998888888999999999999998753 34667888999999999999998888765 88
Q ss_pred eEEEEECCCCCeeeeEe-ccCcccEEEEEEeC--CCCcEEEEEcCCCcEEEEECCCCceeeEEecc------CCeeEEEE
Q 009059 328 TVRVWDTENPDYSLRTF-TGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQMRF 398 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~~p--~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~------~~v~~l~~ 398 (545)
-|++||.--+....+.. ....+.+..+...+ +...+++.|+...+|+++|.+.++.+..++.- .-+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 89999976554311111 11122333333333 33455666688999999999998877666532 33789999
Q ss_pred eCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEE-EEcCCCCCcceEEEEeeCC
Q 009059 399 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV-WSIGSGSKGECIHELSCTG 476 (545)
Q Consensus 399 sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~v-wd~~~~~~~~~i~~~~~~~ 476 (545)
.+.|++++++-..|.|.+.|.++|+.+..+.........++- |..+.|+... |..+.| |....+ ......+...
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldg---imh~q~kppp 960 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDG---IMHLQDKPPP 960 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCC---eeeeccCCCC
Confidence 999999999999999999999999998887765555555543 5666666665 888888 876554 2222222111
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC-------eEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 477 NKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-------KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 477 ~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~-------~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
.+.. -.-.-|..|++......+.+|--... ..+.-....+..++++.-|-+.-++.|...|.|.+
T Consensus 961 epah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 961 EPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 1111 11223555777777777777743211 11122234577888998888887888888888875
No 256
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.6e-10 Score=115.07 Aligned_cols=273 Identities=12% Similarity=0.151 Sum_probs=185.0
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~ 318 (545)
...+++|++.++.....+. ...... ++..|+.|..+.|-- ..+.+.+|++...+.+.. +-|...|+.+.++|.+.
T Consensus 104 ~pn~~v~~vet~~~~s~~q--~k~Q~~-W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~ 178 (566)
T KOG2315|consen 104 NPNVLVYNVETGVQRSQIQ--KKMQNG-WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPE 178 (566)
T ss_pred CCceeeeeeccceehhhee--hhhhcC-cccccccchhhhhhh-hcceEEEEecCCccceee-eeeccceeeEEecCCCC
Confidence 4567788888854322221 112222 689999987654432 356899999887544322 23677899999998633
Q ss_pred --EEEE-----EeCCCeEEEEECCCCCe--e--eeEeccCcccEEEEEEeCCCCcEEEEEcC-----------CCcEEEE
Q 009059 319 --RLAT-----SSADRTVRVWDTENPDY--S--LRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------NSEIRYW 376 (545)
Q Consensus 319 --~l~t-----~s~dg~I~vwd~~~~~~--~--~~~~~~h~~~V~~l~~~p~~~~ll~s~s~-----------dg~I~lw 376 (545)
.+|+ .+.-+.|+||.+..... . .+.|. ...-..+.|++.+..||+..+. ..++++.
T Consensus 179 ~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll 256 (566)
T KOG2315|consen 179 PPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLL 256 (566)
T ss_pred CceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEE
Confidence 3433 23456899998873221 1 12222 2334467788887777655432 2468899
Q ss_pred ECCCCceeeEEeccCCeeEEEEeCCCCEEEEEE--CCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe---
Q 009059 377 SINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--- 451 (545)
Q Consensus 377 d~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~--~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--- 451 (545)
++....+.-.+...++|.++.|++.+..++++. .-..+.|||++.. ++..+ ..++-+++-|+|.|++|+.++
T Consensus 257 ~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df--~egpRN~~~fnp~g~ii~lAGFGN 333 (566)
T KOG2315|consen 257 ATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF--PEGPRNTAFFNPHGNIILLAGFGN 333 (566)
T ss_pred EecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC--CCCCccceEECCCCCEEEEeecCC
Confidence 998666777777789999999999998877655 4679999998754 44444 356778999999999999887
Q ss_pred -CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc------CCeEEEEeCCCCeEEEeccCCCCeeEEE
Q 009059 452 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC------YETLELWNMTENKTLTLSAHDKLVSSLA 524 (545)
Q Consensus 452 -dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~------dg~I~iwd~~~~~~~~~~~h~~~V~~l~ 524 (545)
.|.|.|||+.+. +++..+.. ..-+-+.|+|||.+|+++.. |+.++||+.....+.... .......+.
T Consensus 334 L~G~mEvwDv~n~---K~i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~-f~sEL~qv~ 407 (566)
T KOG2315|consen 334 LPGDMEVWDVPNR---KLIAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKM-FKSELLQVE 407 (566)
T ss_pred CCCceEEEeccch---hhcccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhh-hhHhHhhee
Confidence 459999999875 56666554 34466799999999999986 568999998766544211 111566677
Q ss_pred EeC
Q 009059 525 AST 527 (545)
Q Consensus 525 ~sp 527 (545)
|-|
T Consensus 408 W~P 410 (566)
T KOG2315|consen 408 WRP 410 (566)
T ss_pred eee
Confidence 765
No 257
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=9.6e-11 Score=116.20 Aligned_cols=271 Identities=13% Similarity=0.165 Sum_probs=179.3
Q ss_pred CeEEEEEcCCCCEEEEEeCC-----------CcEEEEEcCCCeEEEEeccC--CccE-EEEEEcCCCCEEEEEeCCCeEE
Q 009059 265 KVESCHFSPDGKLLATGGHD-----------KKAVLWCTESFTVKSTLEEH--TQWI-TDVRFSPSLSRLATSSADRTVR 330 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~d-----------g~I~lwd~~~~~~~~~l~~h--~~~V-~~l~~sp~~~~l~t~s~dg~I~ 330 (545)
.|.-+.|||..+||+|-+.. ..++|||+.+|...+.+... ...+ .-..||.|++|+|.-..+ .|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEE
Confidence 37889999999999996531 57899999999999887652 2222 346899999999988765 699
Q ss_pred EEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcC----CCcEEEEECCCCceeeEEeccCC-eeEEEEeCCCCEE
Q 009059 331 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRI 405 (545)
Q Consensus 331 vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~----dg~I~lwd~~~~~~~~~~~~~~~-v~~l~~sp~~~~l 405 (545)
||+...-.. +..-.-.-..|....|+|.+..|.+-.-. -..+.+-.+.+++.+++.....- -..+.|..+|.+|
T Consensus 330 IyEtpsf~l-ld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 330 IYETPSFML-LDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEecCceee-ecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence 998875221 22111223568888999985433322211 12455666666666555443222 2346677777766
Q ss_pred EEEEC----------CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe----CCcEEEEEcC-CCCCcceEE
Q 009059 406 LAAAI----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIG-SGSKGECIH 470 (545)
Q Consensus 406 ~~~~~----------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s----dg~I~vwd~~-~~~~~~~i~ 470 (545)
.+-.. -..+.||.++........-.-...|...+|-|.|..+++-+ ..++.+|.+. +......+.
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk 488 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK 488 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence 55321 12456666665543222223567899999999998777655 3389999988 444445555
Q ss_pred EEeeCCCceEEEEEcCCCCEEEEEEc---CCeEEEEeCCCCeEE--EeccCCCCeeEEEEeCCCCEEEEEeCCCc
Q 009059 471 ELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKC 540 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~~~l~~~~~---dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~ 540 (545)
.+.. ...+.+.|+|.|+++++++- .|.+.++|+.-..+. ....| ...+.+.|.|.|+|++|++.-..
T Consensus 489 ~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 489 ELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWR 560 (698)
T ss_pred hhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhh
Confidence 5543 56788999999999887754 569999999853333 33334 34678999999999999986543
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.39 E-value=1.4e-10 Score=116.36 Aligned_cols=187 Identities=18% Similarity=0.276 Sum_probs=149.9
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEEEecc---CCccEEEEEEc------C--------------CCCEEEEEeCCCeE
Q 009059 273 PDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFS------P--------------SLSRLATSSADRTV 329 (545)
Q Consensus 273 pdg~~latg~~dg~I~lwd~~~~~~~~~l~~---h~~~V~~l~~s------p--------------~~~~l~t~s~dg~I 329 (545)
|-..|+|....||.+++|++..++....+.. -.+..++..|. | +-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999999888776642 22334444442 2 23467888889999
Q ss_pred EEEECCCCCeeeeEe-ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC-CeeEEEEeCCCCEEEE
Q 009059 330 RVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILA 407 (545)
Q Consensus 330 ~vwd~~~~~~~~~~~-~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~~ 407 (545)
.+|++..++...+.. ..|.+.|.++.++.+- ..|.+++.|+.+..|+......++.+.... .+..++++|+++.+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 999999877533333 4799999999998774 567799999999999999999888887544 4889999999888877
Q ss_pred EECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCC-----CCEEEEEe--CCcEEEEEcCC
Q 009059 408 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS-----GEYLASVS--DELVRVWSIGS 462 (545)
Q Consensus 408 ~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~-----g~~l~s~s--dg~I~vwd~~~ 462 (545)
++ +.|++||+++++.+..|.+|.++|.++.|-.+ |.++.++. +..+.+|-+..
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 75 78999999999999999999999999999876 77887776 66788887765
No 259
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=1e-10 Score=118.97 Aligned_cols=276 Identities=14% Similarity=0.197 Sum_probs=194.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC---------------eEEEEeccCCccEEEEEEcCCCCEEEEEeCC
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---------------TVKSTLEEHTQWITDVRFSPSLSRLATSSAD 326 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~---------------~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d 326 (545)
......|++|.....|+|+||.||.++|..+.+. ..-.++++|...|.-+.|+.+...|-|...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 3456889999999999999999999999976531 1225678999999999999999999999999
Q ss_pred CeEEEEECCCCCeeeeEe-ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEE
Q 009059 327 RTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 405 (545)
Q Consensus 327 g~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l 405 (545)
|.|.||-+-.+..+-... ...+..|.+++|+.+|..+ +....||.|.+=.++..+.-..--.......+.|+++...+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kI-cIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKI-CIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEE-EEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence 999999998776533222 2345678999999998655 47778999988777644332211111235678999998888
Q ss_pred EEEECCCeEEEEECCCC-------EEEEE----ecCCCCCEEEEEEc--------CCCCEEEEEe-CCcEEEEEcCCCCC
Q 009059 406 LAAAIENYISILDVETQ-------VCRLK----LQGHKNQVHSVCWN--------TSGEYLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 406 ~~~~~dg~I~i~d~~~~-------~~~~~----~~~h~~~I~~l~~s--------p~g~~l~s~s-dg~I~vwd~~~~~~ 465 (545)
+.+-..|.+.+||.... .+... +......|..++|. |+-..|+++. .|.+.|..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 88889999999997642 11111 11122346677774 4667888888 77888876554432
Q ss_pred cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---------eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEe
Q 009059 466 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 466 ~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---------~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s 536 (545)
...+ ..+-.+..+.|+++|..|++++.+. .|.+|..-..-.-++.-....|++++|--.|-.+|.+
T Consensus 252 Pvv~----dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A- 326 (1189)
T KOG2041|consen 252 PVVV----DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA- 326 (1189)
T ss_pred CeEE----ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-
Confidence 2222 2346788899999999999998753 4555554333333666667889999997666555544
Q ss_pred CCCcEEE
Q 009059 537 HDKCVKI 543 (545)
Q Consensus 537 ~Dg~I~i 543 (545)
.|+.|.+
T Consensus 327 vdsfiyf 333 (1189)
T KOG2041|consen 327 VDSFIYF 333 (1189)
T ss_pred ecceEEE
Confidence 4555543
No 260
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.35 E-value=2.2e-09 Score=110.03 Aligned_cols=254 Identities=11% Similarity=0.045 Sum_probs=160.9
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEE-EEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccE-
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV- 351 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~-l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V- 351 (545)
++..++.++.++.++.+|..+|+.+....... .+.+ ... .+..++.++.+|.|..||.++++. +..+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~ 179 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALT 179 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCcee
Confidence 46678888889999999999999887665332 2221 112 345677788899999999998875 33333221111
Q ss_pred ----EEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC-----e---eEEEEeC--CCCEEEEEECCCeEEEE
Q 009059 352 ----MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----A---TQMRFQP--RLGRILAAAIENYISIL 417 (545)
Q Consensus 352 ----~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~-----v---~~l~~sp--~~~~l~~~~~dg~I~i~ 417 (545)
....+. + . .++.+..++.+..+|+++++.+........ + ..+.-+| .++.+++++.+|.++.|
T Consensus 180 ~~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 180 LRGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAAL 256 (377)
T ss_pred ecCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEE
Confidence 111222 2 2 455777789999999999987765432111 0 0010011 35788888999999999
Q ss_pred ECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC-CCceEEEEEcCCCCEEEEEE
Q 009059 418 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIG 495 (545)
Q Consensus 418 d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~-~~~v~~~~~sp~~~~l~~~~ 495 (545)
|.++++.+...... ....... .+..|++++ +|.|..+|..+++ .+...... .....+... .+..|++++
T Consensus 257 d~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~---~~W~~~~~~~~~~ssp~i--~g~~l~~~~ 327 (377)
T TIGR03300 257 DLRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGS---ELWKNDELKYRQLTAPAV--VGGYLVVGD 327 (377)
T ss_pred ECCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCc---EEEccccccCCccccCEE--ECCEEEEEe
Confidence 99999887765521 1122222 355566666 8999999998873 33332111 111222222 356799999
Q ss_pred cCCeEEEEeCCCCeEE-EeccCCCCee-EEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 496 CYETLELWNMTENKTL-TLSAHDKLVS-SLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 496 ~dg~I~iwd~~~~~~~-~~~~h~~~V~-~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+|.|+++|..+++.+ .+..+...+. ...+. + +.|+.++.||.|..|.
T Consensus 328 ~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 328 FEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAFR 377 (377)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEeC
Confidence 9999999999999988 5554544333 33333 3 4588899999998763
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.34 E-value=1.9e-08 Score=99.47 Aligned_cols=258 Identities=10% Similarity=0.098 Sum_probs=158.6
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEEcCCCeEEEEeccCC----
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHT---- 305 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~----------dg~I~lwd~~~~~~~~~l~~h~---- 305 (545)
..+.+.|..++.....+.. -..+- .+ ++|||+.|+++.. +..|.+||..+++.+..+....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~---G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG---GFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEc---cCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 4456666666554444332 22222 24 9999998877765 6899999999999998886422
Q ss_pred ---ccEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 306 ---QWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 306 ---~~V~~l~~sp~~~~l~t~s~--dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
.....++++|||++|++... +..|.+.|+.+++. +..+.- .+...-....++ ..++ -| .||......+.+
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv-v~ei~v-p~~~~vy~t~e~-~~~~-~~-~Dg~~~~v~~d~ 176 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF-VRMMDV-PDCYHIFPTAND-TFFM-HC-RDGSLAKVGYGT 176 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE-EEEEeC-CCCcEEEEecCC-ccEE-Ee-ecCceEEEEecC
Confidence 23347899999999998763 68999999998876 444332 111111122221 2221 22 244444433322
Q ss_pred -Ccee-eE---Eecc-CCe-eEEEEeC-CCCEEEEEECCCeEEEEECCCC-----EEEEEecC-------CCCCEEEEEE
Q 009059 381 -GSCA-GV---FKCQ-SGA-TQMRFQP-RLGRILAAAIENYISILDVETQ-----VCRLKLQG-------HKNQVHSVCW 440 (545)
Q Consensus 381 -~~~~-~~---~~~~-~~v-~~l~~sp-~~~~l~~~~~dg~I~i~d~~~~-----~~~~~~~~-------h~~~I~~l~~ 440 (545)
++.. .. +... ..+ ..-.|.+ ++.++++... |.|++.|+... .....+.. ..+.+.-+++
T Consensus 177 ~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 177 KGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY 255 (352)
T ss_pred CCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence 1111 11 1110 000 0114466 6555555555 99999996432 22222211 2233445999
Q ss_pred cCCCCEEEEEe-----------CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCC-EEEEEE-cCCeEEEEeCCC
Q 009059 441 NTSGEYLASVS-----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTE 507 (545)
Q Consensus 441 sp~g~~l~s~s-----------dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~-~l~~~~-~dg~I~iwd~~~ 507 (545)
+++++.+++.. .+.|.++|..+. +.+..+.. +..+..++++|+++ +|++.. .++.|.++|..+
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCC---eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 99998888742 248999999887 55655553 56899999999999 777676 467899999999
Q ss_pred CeEEE
Q 009059 508 NKTLT 512 (545)
Q Consensus 508 ~~~~~ 512 (545)
++.+.
T Consensus 332 ~k~i~ 336 (352)
T TIGR02658 332 GKELS 336 (352)
T ss_pred CeEEe
Confidence 98873
No 262
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.33 E-value=5e-10 Score=110.36 Aligned_cols=271 Identities=17% Similarity=0.192 Sum_probs=187.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCC--------------
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-------------- 327 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg-------------- 327 (545)
-.-++..++|||.|.+|++.... .|.+|..+.+..+..+. | ..|..+.|+|+++||.+=+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 45578889999999999987654 68999988877665554 4 3589999999999999965533
Q ss_pred -eEEEEECCCCCeeeeEeccCccc--EE-EEEEeCCCCcEEEEEcCCCcEEEEECCCCcee-eEEe--ccCCeeEEEEeC
Q 009059 328 -TVRVWDTENPDYSLRTFTGHSTT--VM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFK--CQSGATQMRFQP 400 (545)
Q Consensus 328 -~I~vwd~~~~~~~~~~~~~h~~~--V~-~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~-~~~~--~~~~v~~l~~sp 400 (545)
.+.+||+.++.. +..+.....+ .+ -+.|+-+..+++-. ....++++++ +.... ..+. ...++....|+|
T Consensus 108 n~~~vwd~~sg~i-v~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP 183 (561)
T COG5354 108 NNVFVWDIASGMI-VFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISP 183 (561)
T ss_pred CceeEEeccCcee-EeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec-CCccccCchhhccccceeeEEecC
Confidence 499999998764 6666665554 55 67787775544333 2456999997 33221 1111 125688888998
Q ss_pred CCC--EEEEE-----ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe------------CCcEEEEEcC
Q 009059 401 RLG--RILAA-----AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS------------DELVRVWSIG 461 (545)
Q Consensus 401 ~~~--~l~~~-----~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s------------dg~I~vwd~~ 461 (545)
.++ .|+.- ...+.+++|.+..+..+.+..-....=..+.|.+.|++|++-- +..++++++.
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 643 23332 2467899999987666554332333345688999998877532 2467888886
Q ss_pred CCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc--CCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCC-
Q 009059 462 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD- 538 (545)
Q Consensus 462 ~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~--dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~D- 538 (545)
.. .+ .......++|...+|.|.++.+++++. .-.+.++|++.+ +.+......=+.+.|+|.+++++.++-|
T Consensus 264 e~---~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 264 ER---SI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred cc---cc-ceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCc
Confidence 33 22 222245789999999999988777763 448999999988 4344445556678899999999988876
Q ss_pred --CcEEEcC
Q 009059 539 --KCVKIWK 545 (545)
Q Consensus 539 --g~I~iWd 545 (545)
|.|-|||
T Consensus 338 l~gni~i~~ 346 (561)
T COG5354 338 LQGNIEIFD 346 (561)
T ss_pred cccceEEec
Confidence 5577765
No 263
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.29 E-value=1.1e-10 Score=107.57 Aligned_cols=198 Identities=20% Similarity=0.269 Sum_probs=152.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE--EEeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCC-eee
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD-YSL 341 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~--~~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~-~~~ 341 (545)
..++.|++.+..++++-.+|.+.+-+.....+. ..++.|.-+++...|+. +.+++++|+.|+.+..||++.++ ...
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 457889999999999999999996665554444 47899999999999976 45689999999999999999444 333
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC-CCceeeEEeccCCeeEEEEeCCC-CEEEEEECCCeEEEEEC
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDV 419 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~-~~~~~~~~~~~~~v~~l~~sp~~-~~l~~~~~dg~I~i~d~ 419 (545)
....-|...|.+|.-+|.....+++|+.|-.|++||.+ -++++..-...++|..+..+|.- ..+++++.-+..+|.+.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence 34667899999999999888899999999999999998 57888777777899999999853 34556666666677776
Q ss_pred CCC--E---EEEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEE-EEEcCCC
Q 009059 420 ETQ--V---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVR-VWSIGSG 463 (545)
Q Consensus 420 ~~~--~---~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~-vwd~~~~ 463 (545)
..+ + .....+.|.+-...-.|.....+|++++ |+.++ +|-.-++
T Consensus 284 ~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 284 SDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 654 2 3344556777777777765567888877 77755 7765443
No 264
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.27 E-value=9.8e-09 Score=105.25 Aligned_cols=254 Identities=13% Similarity=0.069 Sum_probs=160.0
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEE
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 354 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l 354 (545)
+..+++++.++.|..+|..+|+.+............+.. ++..++.++.++.+..+|..+++. +..... .+.+.+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~-~W~~~~-~~~~~~~ 140 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKE-LWRAKL-SSEVLSP 140 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcE-eeeecc-CceeecC
Confidence 568888888999999999999998776544332222332 467888888999999999988876 333221 2222221
Q ss_pred EEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeE------EEEeCCCCEEEEEECCCeEEEEECCCCEEEEEe
Q 009059 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ------MRFQPRLGRILAAAIENYISILDVETQVCRLKL 428 (545)
Q Consensus 355 ~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~------l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~ 428 (545)
-... +..+ +.+..++.|+.||.++++.+..+........ ..+. ++.++++..++.+..+|+++++.+...
T Consensus 141 p~v~-~~~v-~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 141 PLVA-NGLV-VVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred CEEE-CCEE-EEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeee
Confidence 1111 2344 4666799999999999998887765433211 1121 357788888999999999999876543
Q ss_pred cCCCC----C---EEEEEEcC--CCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC
Q 009059 429 QGHKN----Q---VHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 498 (545)
Q Consensus 429 ~~h~~----~---I~~l~~sp--~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 498 (545)
..... . +..+.-+| .+..+++++ ++.++.||..+++ .+..... ....... ..+..+++++.++
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~---~~W~~~~--~~~~~p~--~~~~~vyv~~~~G 289 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR---VLWKRDA--SSYQGPA--VDDNRLYVTDADG 289 (377)
T ss_pred ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc---EEEeecc--CCccCce--EeCCEEEEECCCC
Confidence 31100 0 00010011 234555555 9999999998873 3333321 1111122 2456788889999
Q ss_pred eEEEEeCCCCeEE-EeccC-CCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 499 TLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 499 ~I~iwd~~~~~~~-~~~~h-~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.|+.+|..+++.+ ..... ......... .+..|++++.||.|.+||
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 9999999999876 33221 112222222 366888999999998875
No 265
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.27 E-value=2.2e-10 Score=106.12 Aligned_cols=238 Identities=18% Similarity=0.324 Sum_probs=163.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-----EEEEeccCC------------ccEEEEEEcCCC--CEEEEE
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHT------------QWITDVRFSPSL--SRLATS 323 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~-----~~~~l~~h~------------~~V~~l~~sp~~--~~l~t~ 323 (545)
.+.|+++.|...|.||++|...|.|.+|.-+... ....+++|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4569999999999999999999999999755322 223344443 358888887653 356667
Q ss_pred eCCCeEEEEECCCCCe-----------------------------------------eeeEe-ccCcccEEEEEEeCCCC
Q 009059 324 SADRTVRVWDTENPDY-----------------------------------------SLRTF-TGHSTTVMSLDFHPSKE 361 (545)
Q Consensus 324 s~dg~I~vwd~~~~~~-----------------------------------------~~~~~-~~h~~~V~~l~~~p~~~ 361 (545)
+.|.+|++|.+..... +.+.+ ..|...|.++.|+.+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 7999999998764310 01112 35777889999998876
Q ss_pred cEEEEEcCCCcEEEEECCCCceeeE---Eec------cCCeeEEEEeCC-CCEEEEEECCCeEEEEECCCCEE------E
Q 009059 362 DLLCSCDNNSEIRYWSINNGSCAGV---FKC------QSGATQMRFQPR-LGRILAAAIENYISILDVETQVC------R 425 (545)
Q Consensus 362 ~ll~s~s~dg~I~lwd~~~~~~~~~---~~~------~~~v~~l~~sp~-~~~l~~~~~dg~I~i~d~~~~~~------~ 425 (545)
.++ +++ |=.|.+|++.-..-... ++. ..-|++..|+|. ...+...+..|.|++-|++.... +
T Consensus 186 t~l-SaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 186 TLL-SAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred eee-ecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 555 554 77899999864322111 111 123788899995 45677788899999999984321 1
Q ss_pred E--E--------ecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCC------------Cce---E
Q 009059 426 L--K--------LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG------------NKF---H 480 (545)
Q Consensus 426 ~--~--------~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~------------~~v---~ 480 (545)
. . +.+-...|..+.|+++|+|+++-.--+|+|||++..+ .++.++..|. ..| .
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeeeE
Confidence 1 1 1122347889999999999998887899999998764 4555554332 222 4
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 481 SCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 481 ~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
.+.|+.+.+.+++|+.....-+|-
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEecCCcccccccccccceeeec
Confidence 577888888888888877666665
No 266
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=8.8e-09 Score=106.04 Aligned_cols=227 Identities=12% Similarity=0.066 Sum_probs=149.3
Q ss_pred CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCE-EEEEeCC---CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCC
Q 009059 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 360 (545)
Q Consensus 285 g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~-l~t~s~d---g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~ 360 (545)
..|.+-|.+.........+ . .+....|+|||+. ++..+.+ ..|.++|+.+++. +.+....+......|+|||
T Consensus 169 ~~l~~~d~dg~~~~~~~~~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKG-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCceeEEccC-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence 3556656554443333333 3 7788999999984 6654443 4688899987653 3333355667778899999
Q ss_pred CcEEEEEcCC--CcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC-C--eEEEEECCCCEEEEEecCCCCCE
Q 009059 361 EDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQV 435 (545)
Q Consensus 361 ~~ll~s~s~d--g~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d-g--~I~i~d~~~~~~~~~~~~h~~~I 435 (545)
..++++.+.+ ..|+++|+.+++...............|+|+|+.|+..+.. + .|+++|+.+++....... ...
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 9888776654 46888898887755443333334567899999988887752 2 789999988766443321 111
Q ss_pred EEEEEcCCCCEEEEEe-C-------C--cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEE
Q 009059 436 HSVCWNTSGEYLASVS-D-------E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLEL 502 (545)
Q Consensus 436 ~~l~~sp~g~~l~s~s-d-------g--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~i 502 (545)
...|+|+|++|+... . + .|.+.|+.++.. ..+... .......|+|||+.|+.....+ .|.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 248999999888776 2 2 578888877632 222222 2233578999999888777654 5888
Q ss_pred EeCCCCeEEEeccCCCCeeEE
Q 009059 503 WNMTENKTLTLSAHDKLVSSL 523 (545)
Q Consensus 503 wd~~~~~~~~~~~h~~~V~~l 523 (545)
+++.......+....+.+...
T Consensus 397 ~~l~g~~~~~l~~~~g~~~~p 417 (419)
T PRK04043 397 IRLNYNKSFLFPLKVGKIQSI 417 (419)
T ss_pred EecCCCeeEEeecCCCccCCC
Confidence 888887666555444444443
No 267
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.26 E-value=1e-09 Score=110.20 Aligned_cols=187 Identities=19% Similarity=0.306 Sum_probs=150.4
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEec---cCcccEEEEEEe------C-------------CCCcEEEEEcCCCc
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFH------P-------------SKEDLLCSCDNNSE 372 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~---~h~~~V~~l~~~------p-------------~~~~ll~s~s~dg~ 372 (545)
|...|+|....||.+++|+...++. ...|. .-++..++..|. | .+..+++-|...|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~-~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQL-QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred chhheEeecCCCCeEEEEEccCcee-eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 4567899999999999999987764 33332 123444455442 1 13456777888999
Q ss_pred EEEEECCCCceeeEEe---ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEE
Q 009059 373 IRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 449 (545)
Q Consensus 373 I~lwd~~~~~~~~~~~---~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s 449 (545)
|.+|++..++....+. +.+.+.++.++.+-+.|.+++.|+.+..|+......++.+......+.+++.+|||..+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999999988876 5567999999999999999999999999999999999999999999999999999998887
Q ss_pred EeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCC-----CCEEEEEEc-CCeEEEEeCC
Q 009059 450 VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT-----FPSLLVIGC-YETLELWNMT 506 (545)
Q Consensus 450 ~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~-----~~~l~~~~~-dg~I~iwd~~ 506 (545)
++ +.|++||+.+. +.+..+.+|.++|+++.|.-+ |.+++++.. +..+.+|-+.
T Consensus 162 as-~~ik~~~~~~k---evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 162 AS-RQIKVLDIETK---EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred cc-ceEEEEEccCc---eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 64 57999999887 889999999999999999877 666665544 4466777553
No 268
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.26 E-value=9.6e-10 Score=101.35 Aligned_cols=231 Identities=11% Similarity=0.072 Sum_probs=158.6
Q ss_pred CeEEEEEcC---CCC-EEEEEeCCCcEEEEEcCCCeEEEEeccCC------ccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 265 KVESCHFSP---DGK-LLATGGHDKKAVLWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 265 ~V~~l~~sp---dg~-~latg~~dg~I~lwd~~~~~~~~~l~~h~------~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
.+..+.|.. +|. .|+-+..+|.|.+|..........+++-. ....++.|++.+..++++..+|.+.+-+.
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~ 150 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYE 150 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEec
Confidence 345555543 455 46667778999999876544444443211 12457788998999999999999986555
Q ss_pred CCCCe-eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC-CCceeeE--EeccCCeeEEEEeCC-CCEEEEEE
Q 009059 335 ENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FKCQSGATQMRFQPR-LGRILAAA 409 (545)
Q Consensus 335 ~~~~~-~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~-~~~~~~~--~~~~~~v~~l~~sp~-~~~l~~~~ 409 (545)
..... .++.++.|.-+++...|+....+++++|+.|+.+..||++ .++.+.. ..+..+|.++.-+|. ..++++|+
T Consensus 151 t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGs 230 (339)
T KOG0280|consen 151 TEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGS 230 (339)
T ss_pred ceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEec
Confidence 44332 2457889999999999998888999999999999999999 3444432 346678888888774 56788999
Q ss_pred CCCeEEEEECCC-CEEEEEecCCCCCEEEEEEcCCC--CEEEEEeCCcEEEEEcCCCCCc--ceEEEEeeCCCceEEEEE
Q 009059 410 IENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKG--ECIHELSCTGNKFHSCVF 484 (545)
Q Consensus 410 ~dg~I~i~d~~~-~~~~~~~~~h~~~I~~l~~sp~g--~~l~s~sdg~I~vwd~~~~~~~--~~i~~~~~~~~~v~~~~~ 484 (545)
.|..|++||.++ ++++..-. -.+.|..+.++|.- ++|+++--+-.+|.+....... ......+.|..-+..-.|
T Consensus 231 YDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DW 309 (339)
T KOG0280|consen 231 YDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDW 309 (339)
T ss_pred cccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecccc
Confidence 999999999994 56655443 45889999999854 3455555444666666554321 133444556665666666
Q ss_pred cCCCCEEEEEEc
Q 009059 485 HPTFPSLLVIGC 496 (545)
Q Consensus 485 sp~~~~l~~~~~ 496 (545)
.....+|++++.
T Consensus 310 d~~~~~lATCsF 321 (339)
T KOG0280|consen 310 DSKDSFLATCSF 321 (339)
T ss_pred ccccceeeeeec
Confidence 444455666553
No 269
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=6.7e-10 Score=118.04 Aligned_cols=196 Identities=14% Similarity=0.208 Sum_probs=155.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCcc----EEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----ITDVRFSPSLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~----V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
.+.|....+.-+.+.++.+..++.+.+||...+.....+...... ..-+-++++.-++++|+.-+.|.+|+.....
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 344555666677888999999999999999887776665433222 1223346677799999999999999998544
Q ss_pred eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee--EEeccCCeeEEEEeCCCCEEEEEECCCeEEE
Q 009059 339 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQSGATQMRFQPRLGRILAAAIENYISI 416 (545)
Q Consensus 339 ~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i 416 (545)
.+ ..+.+|.+.|..+.|+.+|. +++++++|.++++|++.+.+... .|.+...+..++|.|+ .+++++.|-+.++
T Consensus 167 ~p-~~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrv 242 (967)
T KOG0974|consen 167 KP-IRLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRV 242 (967)
T ss_pred Cc-ceecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEE
Confidence 43 36889999999999999975 55599999999999999988765 5667788999999997 8999999999999
Q ss_pred EECCCCEEEEEecCCC-CCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q 009059 417 LDVETQVCRLKLQGHK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 463 (545)
Q Consensus 417 ~d~~~~~~~~~~~~h~-~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~ 463 (545)
|+.+... ...+.+|. ..|..++..++...++++. |+.+++|++...
T Consensus 243 W~~~~~~-l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 243 WGVNGTQ-LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred Eecccce-ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 9765443 33666665 4789999998888888888 999999998654
No 270
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.24 E-value=3.3e-08 Score=110.57 Aligned_cols=282 Identities=15% Similarity=0.209 Sum_probs=184.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEE----EcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC-
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLW----CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE- 335 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lw----d~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~- 335 (545)
...+.|.++.|-++...|+.+..+|.|.+. +..+.. +.....-...|.+++||||+..|+..+.++++.+..-.
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 345789999999999999999999999999 544432 22223345779999999999999999999988876432
Q ss_pred -----------C-CC-ee--------eeEecc------------------------CcccEEEEEEeCCCCcEEEEEc--
Q 009059 336 -----------N-PD-YS--------LRTFTG------------------------HSTTVMSLDFHPSKEDLLCSCD-- 368 (545)
Q Consensus 336 -----------~-~~-~~--------~~~~~~------------------------h~~~V~~l~~~p~~~~ll~s~s-- 368 (545)
. +. .. -..|.| +...-..|+|-.||.+++++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 0 00 00 001100 2334567889999877665543
Q ss_pred C---CCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEEC---CCeEEEEECCCC---EEEEEecCCCCCEEEE
Q 009059 369 N---NSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAI---ENYISILDVETQ---VCRLKLQGHKNQVHSV 438 (545)
Q Consensus 369 ~---dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~---dg~I~i~d~~~~---~~~~~~~~h~~~I~~l 438 (545)
. -..|++|+-+ |....+.+.- +--..++|.|.|+.|++.-. ...|.+|+-+.. +....+......|..+
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEE
Confidence 2 2579999976 6554444322 22457899999988877765 345666664432 2122222355689999
Q ss_pred EEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEee-CCCceEEEEEcCCCCE-EEEEEcCCeEEEEeC----CCC----
Q 009059 439 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPS-LLVIGCYETLELWNM----TEN---- 508 (545)
Q Consensus 439 ~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~-~~~~v~~~~~sp~~~~-l~~~~~dg~I~iwd~----~~~---- 508 (545)
.|++++.+||....+.|.+|-..+.. ...-+++.. ....+..+.|+|.... |.+.+.++.+..+++ ..+
T Consensus 311 ~Wn~ds~iLAv~~~~~vqLWt~~NYH-WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDRVQLWTRSNYH-WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred EECCCCCEEEEEecCCceEEEeeCCE-EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 99999999999886679999987642 122223332 2233455899996643 556665565544332 211
Q ss_pred -----eEEEe-----------------------ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 509 -----KTLTL-----------------------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 509 -----~~~~~-----------------------~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
....+ ......|.+++|++++..+++-..||.|.+|+
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 00010 12346799999999998899999999998874
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.24 E-value=2e-08 Score=98.25 Aligned_cols=283 Identities=13% Similarity=0.086 Sum_probs=185.9
Q ss_pred ceeeeeecCC-ceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCeEEEEeccCCc--cEEEEEEcC
Q 009059 240 RVGRSAEVGK-GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQ--WITDVRFSP 315 (545)
Q Consensus 240 ~~~~~~~~~~-~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~-~~~~~~~l~~h~~--~V~~l~~sp 315 (545)
...++|-... |..|+.+-.+.+|-.. --+-. ++..+....||.=.||.++ .|+-+ +.|+. .-.+=..+.
T Consensus 204 trGklWis~d~g~tFeK~vdl~~~vS~---PmIV~-~RvYFlsD~eG~GnlYSvdldGkDl---rrHTnFtdYY~R~~ns 276 (668)
T COG4946 204 TRGKLWISSDGGKTFEKFVDLDGNVSS---PMIVG-ERVYFLSDHEGVGNLYSVDLDGKDL---RRHTNFTDYYPRNANS 276 (668)
T ss_pred ccceEEEEecCCcceeeeeecCCCcCC---ceEEc-ceEEEEecccCccceEEeccCCchh---hhcCCchhccccccCC
Confidence 3567786544 4588888888887443 22222 2333334556655555443 22222 22332 122333456
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeEec-c------Cc---ccEEEEE-EeCCCCcEEEEEcCCCcEEEEECCCCcee
Q 009059 316 SLSRLATSSADRTVRVWDTENPDYSLRTFT-G------HS---TTVMSLD-FHPSKEDLLCSCDNNSEIRYWSINNGSCA 384 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~-~------h~---~~V~~l~-~~p~~~~ll~s~s~dg~I~lwd~~~~~~~ 384 (545)
||+.++.. ..|.|.+||.++.......+. . .. .+..-+. |++-...+++..+ .|...+.+...+-.+
T Consensus 277 DGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~i 354 (668)
T COG4946 277 DGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSI 354 (668)
T ss_pred CCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeE
Confidence 88887765 567899999887653211111 0 00 1111111 4443345555555 677777776655444
Q ss_pred eEEeccCCeeEEEEeCCCCEEEEEECCC-eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-cEEEEEcCC
Q 009059 385 GVFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGS 462 (545)
Q Consensus 385 ~~~~~~~~v~~l~~sp~~~~l~~~~~dg-~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg-~I~vwd~~~ 462 (545)
. +....+|.-..+..+...++.|..|| .|-|||.++++... +...-+.|.++..+++|++++++.|. .|.+.|+.+
T Consensus 355 q-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn 432 (668)
T COG4946 355 Q-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred E-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC
Confidence 3 34445688888888888899999998 89999999987544 45567899999999999999999855 899999998
Q ss_pred CCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC----eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEe
Q 009059 463 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 463 ~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg----~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s 536 (545)
+.. ...-....+-|+.+.|||++++|+.+--+| .|++||+.+++........+.=.+-+|.||+++|.--+
T Consensus 433 gnv---~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 433 GNV---RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CCe---eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 842 222233457799999999999999988777 89999999999885554445556678999999876544
No 272
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.23 E-value=4.9e-10 Score=105.25 Aligned_cols=228 Identities=18% Similarity=0.235 Sum_probs=148.9
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe----eeeEeccC------------cccEEEEEEeCCCCc-EEEEE
Q 009059 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----SLRTFTGH------------STTVMSLDFHPSKED-LLCSC 367 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~----~~~~~~~h------------~~~V~~l~~~p~~~~-ll~s~ 367 (545)
.+-|.+|.|...|.+|+||..+|.|.++.-+.... ....+..| ...|..+.|.++++. .+...
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 45689999999999999999999999997553221 12233333 346888999876543 34456
Q ss_pred cCCCcEEEEECCCCceee-E--Ee---ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEe-cCCCCCEEEEEE
Q 009059 368 DNNSEIRYWSINNGSCAG-V--FK---CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-QGHKNQVHSVCW 440 (545)
Q Consensus 368 s~dg~I~lwd~~~~~~~~-~--~~---~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~-~~h~~~I~~l~~ 440 (545)
..|.+|++|.+....... . +. ....++.+..- +.+..+-.+. ..+.+.+ .+|...|++|.+
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p------~~~~~~~~ve------a~prRv~aNaHtyhiNSIS~ 172 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLP------VEGRHDLEVE------ASPRRVYANAHTYHINSISV 172 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeece------eeccccceee------eeeeeeccccceeEeeeeee
Confidence 679999999987543322 0 00 01112222110 0111111110 1122222 358889999999
Q ss_pred cCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCC-----CceEEEEEcCCC-CEEEEEEcCCeEEEEeCCCCeEE---
Q 009059 441 NTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG-----NKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL--- 511 (545)
Q Consensus 441 sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~-----~~v~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~~--- 511 (545)
+.|+..++++.|=.|.+|++.-....--+..++.+. .-|++..|+|.. +.++..++.|+|++-|++...+.
T Consensus 173 NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 173 NSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred cCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence 999999999989999999987654333344444443 347888999965 56777888899999999843221
Q ss_pred ----Ee----------ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 512 ----TL----------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 512 ----~~----------~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.. ..--..|..+.|+++|+|+++-+. -+|+|||
T Consensus 253 sKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD 299 (433)
T KOG1354|consen 253 SKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWD 299 (433)
T ss_pred hhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEe
Confidence 11 011245888999999999998765 5899997
No 273
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.22 E-value=2e-08 Score=114.44 Aligned_cols=237 Identities=13% Similarity=0.160 Sum_probs=160.6
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEEcCCCeEEEEecc--------------CCccEEEEEEcCCCCEEEEEeC-CCeEE
Q 009059 267 ESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEE--------------HTQWITDVRFSPSLSRLATSSA-DRTVR 330 (545)
Q Consensus 267 ~~l~~spd-g~~latg~~dg~I~lwd~~~~~~~~~l~~--------------h~~~V~~l~~sp~~~~l~t~s~-dg~I~ 330 (545)
..++++++ +.++++-..++.|++||... ..+..+.+ +-.....|++.+++..|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788874 55667767788999999764 44433322 1123578999998887666654 56899
Q ss_pred EEECCCCCeeeeEeccC-----------------cccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-----
Q 009059 331 VWDTENPDYSLRTFTGH-----------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----- 388 (545)
Q Consensus 331 vwd~~~~~~~~~~~~~h-----------------~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~----- 388 (545)
++|+.++. +.++.+- -.....++|+|++..++++...++.|++||..++.......
T Consensus 650 ~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 99987654 3333210 12346899999767788788888999999998765432110
Q ss_pred ----------ccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecC-------------C--------CCCEE
Q 009059 389 ----------CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG-------------H--------KNQVH 436 (545)
Q Consensus 389 ----------~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~-------------h--------~~~I~ 436 (545)
.-.....++++|+++.++++.. ++.|++||+.++.......+ + -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 0123567999999886666654 68999999987653221100 0 11346
Q ss_pred EEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEee--------------CCCceEEEEEcCCCCEEEEEEcCCeEE
Q 009059 437 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--------------TGNKFHSCVFHPTFPSLLVIGCYETLE 501 (545)
Q Consensus 437 ~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~--------------~~~~v~~~~~sp~~~~l~~~~~dg~I~ 501 (545)
.++++++|.++++-. ++.|++||..++. .. .+.+ .-.....++++++|+.+++-+.++.|+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~---v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKR---VT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCe---EE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 889999998777766 7899999987652 22 2211 123567899999999777777788999
Q ss_pred EEeCCCCeE
Q 009059 502 LWNMTENKT 510 (545)
Q Consensus 502 iwd~~~~~~ 510 (545)
+||+.+++.
T Consensus 884 vid~~~~~~ 892 (1057)
T PLN02919 884 YLDLNKGEA 892 (1057)
T ss_pred EEECCCCcc
Confidence 999988765
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.22 E-value=1.5e-08 Score=115.42 Aligned_cols=232 Identities=10% Similarity=0.111 Sum_probs=156.0
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeeeEecc--------------CcccEEEEEEeCCCCcEEEEEcCCCcE
Q 009059 309 TDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTG--------------HSTTVMSLDFHPSKEDLLCSCDNNSEI 373 (545)
Q Consensus 309 ~~l~~sp~-~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~--------------h~~~V~~l~~~p~~~~ll~s~s~dg~I 373 (545)
..+++++. +.++++-+.++.|++||... .. +..+.+ .-.....+++.++++.++++-..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 45788764 55666767788999999864 33 222221 112357899998876666555556789
Q ss_pred EEEECCCCceeeEEec------------------cCCeeEEEEeCCCCEEEE-EECCCeEEEEECCCCEEEEEecCC---
Q 009059 374 RYWSINNGSCAGVFKC------------------QSGATQMRFQPRLGRILA-AAIENYISILDVETQVCRLKLQGH--- 431 (545)
Q Consensus 374 ~lwd~~~~~~~~~~~~------------------~~~v~~l~~sp~~~~l~~-~~~dg~I~i~d~~~~~~~~~~~~h--- 431 (545)
+++|+.++.. .++.. -.....++++|+++.+++ ...++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE 726 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence 9999877653 22211 113467999996555554 4567899999998875432 2111
Q ss_pred ------------CCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEE-----------EEee--------CCCc
Q 009059 432 ------------KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH-----------ELSC--------TGNK 478 (545)
Q Consensus 432 ------------~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~-----------~~~~--------~~~~ 478 (545)
-.....|+++|++..|+++. ++.|++||+.++.. ..+. .+.. ....
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccC
Confidence 12456799999998666555 67999999986532 1110 0000 0113
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccC--------------CCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 479 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH--------------DKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 479 v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h--------------~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
...++++++|..+++-..++.|++||..++....+.+. -.....|+++++|+++++-+.+++|++|
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 46889999998777777788999999998877654332 1357889999999998888899999999
Q ss_pred C
Q 009059 545 K 545 (545)
Q Consensus 545 d 545 (545)
|
T Consensus 886 d 886 (1057)
T PLN02919 886 D 886 (1057)
T ss_pred E
Confidence 6
No 275
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.4e-08 Score=104.56 Aligned_cols=200 Identities=10% Similarity=0.046 Sum_probs=134.3
Q ss_pred eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCc-EEEEEcC--CCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCE
Q 009059 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 404 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~-ll~s~s~--dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~ 404 (545)
.|.+-|.+... .+.+.... .+....|+|+++. ++++... +..|+++|+.+++........+......|+|++..
T Consensus 170 ~l~~~d~dg~~--~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 170 NIVLADYTLTY--QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSK 246 (419)
T ss_pred eEEEECCCCCc--eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCE
Confidence 45555554322 33333333 7889999999986 4433332 45799999998887666655555677889999988
Q ss_pred EEEEEC---CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC----cEEEEEcCCCCCcceEEEEeeCCC
Q 009059 405 ILAAAI---ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE----LVRVWSIGSGSKGECIHELSCTGN 477 (545)
Q Consensus 405 l~~~~~---dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg----~I~vwd~~~~~~~~~i~~~~~~~~ 477 (545)
++.... +..|+++|+.++... .+..+........|+|||+.|+..++. .|+++|+.++.... + ... ..
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-l-t~~--g~ 321 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-V-VFH--GK 321 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-C-ccC--CC
Confidence 876543 357999999887643 344344334456899999988877733 78888887764311 1 111 11
Q ss_pred ceEEEEEcCCCCEEEEEEcC---------CeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 478 KFHSCVFHPTFPSLLVIGCY---------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 478 ~v~~~~~sp~~~~l~~~~~d---------g~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
....|+|+|++|+..... ..|++.|+.++....+... .......|+|||+.|+....+
T Consensus 322 --~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 322 --NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred --cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 124899999998887754 2788999988877655543 233468899999987766544
No 276
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1e-08 Score=102.03 Aligned_cols=270 Identities=17% Similarity=0.218 Sum_probs=183.3
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC-----------CCeEEEEECC
Q 009059 267 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------DRTVRVWDTE 335 (545)
Q Consensus 267 ~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~-----------dg~I~vwd~~ 335 (545)
+-+.|||-|.||+|-..- -|.+|--++...++.+. |.+ |.-+.|||+.+||+|-+. ...++|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEecc-ceeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 458999999999998654 58899888877777775 654 888999999999999653 2579999999
Q ss_pred CCCeeeeEecc--CcccEE-EEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECC
Q 009059 336 NPDYSLRTFTG--HSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 336 ~~~~~~~~~~~--h~~~V~-~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
++.. .+.|.. ....++ -..|+.|++++.... ...|.||+.....++..-. .-.+|....|+|.+..|+.-...
T Consensus 291 tG~l-krsF~~~~~~~~~WP~frWS~DdKy~Arm~--~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 291 TGLL-KRSFPVIKSPYLKWPIFRWSHDDKYFARMT--GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred ccch-hcceeccCCCccccceEEeccCCceeEEec--cceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 9875 555543 222233 457888876555333 3569999877644332211 22578899999997777665432
Q ss_pred -----CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-----------cEEEEEcCCCCCcceEEEEeeC
Q 009059 412 -----NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-----------LVRVWSIGSGSKGECIHELSCT 475 (545)
Q Consensus 412 -----g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg-----------~I~vwd~~~~~~~~~i~~~~~~ 475 (545)
..+.+..+.+++.+++..-+.-.=..+.|-.+|.||+.--|. .+.|+.++..... +... ..
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp--ve~v-el 444 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP--VEVV-EL 444 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCC--ceee-ec
Confidence 367788888887777665554444567888899999875422 3556666544321 2111 23
Q ss_pred CCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCC-eEEEe--ccCCCCeeEEEEeCCCCEEEEEeC---CCcEEEcC
Q 009059 476 GNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTEN-KTLTL--SAHDKLVSSLAASTVNGMVASASH---DKCVKIWK 545 (545)
Q Consensus 476 ~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~-~~~~~--~~h~~~V~~l~~spd~~~las~s~---Dg~I~iWd 545 (545)
...|...+|-|.|..+++.+... ++.+|.+++. ....+ .-.....+.+.|+|.|++++.+.. .|.+.++|
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 56788999999998877776543 8889988742 22111 112255788999999999887653 46666654
No 277
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.19 E-value=1.9e-10 Score=117.47 Aligned_cols=279 Identities=18% Similarity=0.329 Sum_probs=190.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCeEEEEecc-CCccEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCC-
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEE-HTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD- 338 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~-~~~~~~~l~~-h~~~V~~l~~sp~--~~~l~t~s~dg~I~vwd~~~~~- 338 (545)
+.+.++.++|.|+-+|.++.-| +.+-|+. .+.+.+-+.. ..-.|-.+.|++. -.+-++......-.+|++....
T Consensus 25 ~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS 103 (1081)
T ss_pred CcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence 4577899999999999998765 4455554 3333333321 1234667788774 3344444455567789875432
Q ss_pred -eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc-eeeEE-eccCCeeEEEEeCCCCEEEEEECCCeEE
Q 009059 339 -YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF-KCQSGATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 339 -~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~-~~~~~-~~~~~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
..-..+.+|...|+.+.|+|....++++|+.|..+..||++... .+..+ .-+.....++|+.....+++.+..+.|.
T Consensus 104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~ 183 (1081)
T KOG0309|consen 104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIF 183 (1081)
T ss_pred cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceE
Confidence 22346678999999999999999999999999999999998754 23322 3346688999999888999999999999
Q ss_pred EEECCCC-EEEEEecCCCCCEEEEEEcCC--CCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEE
Q 009059 416 ILDVETQ-VCRLKLQGHKNQVHSVCWNTS--GEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 492 (545)
Q Consensus 416 i~d~~~~-~~~~~~~~h~~~I~~l~~sp~--g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~ 492 (545)
+||++.+ .++..+++|...|+.+.|..- +..+.+..|++|+.||...... +. ........+|..-.+.|-|.-.+
T Consensus 184 vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~-e~-~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 184 VWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT-ES-KRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred EEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc-cc-ceeccccCcceeccccccCceeE
Confidence 9999975 678889999999999998653 3344444499999999876532 11 11222345666666666554322
Q ss_pred EEEcCC--eEE---------EEeCCCC-eEE-EeccCCCCeeEEEEeCCC--------C--EEEEEeCCCcEEEcC
Q 009059 493 VIGCYE--TLE---------LWNMTEN-KTL-TLSAHDKLVSSLAASTVN--------G--MVASASHDKCVKIWK 545 (545)
Q Consensus 493 ~~~~dg--~I~---------iwd~~~~-~~~-~~~~h~~~V~~l~~spd~--------~--~las~s~Dg~I~iWd 545 (545)
+--..| .+. .|+..++ ..+ ++.+|...|....|-..+ + .|+|-+.|..+++|.
T Consensus 262 ~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 262 IMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred eccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 221111 333 3444333 233 788999988777664322 2 799999999999993
No 278
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.19 E-value=6.2e-10 Score=104.65 Aligned_cols=245 Identities=13% Similarity=0.201 Sum_probs=175.0
Q ss_pred eEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEE
Q 009059 296 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374 (545)
Q Consensus 296 ~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~-~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~ 374 (545)
.++..+++|.+.|++...-|...-+++.+.|.+++||--.+ +++-......-..++.++.+.++.. .|+.|-..|++.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtvt 93 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceEE
Confidence 34567789999999999999888899999999999996443 3321222233456799999998854 555888899998
Q ss_pred EEECCCC----ceee-EEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEE
Q 009059 375 YWSINNG----SCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 449 (545)
Q Consensus 375 lwd~~~~----~~~~-~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s 449 (545)
-+.+... ...+ ...+...+..+.|+-...++++.+.|..+.-.-.+.+..+-.+.- ....+++.+.-. +...
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fv 170 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFV 170 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEe
Confidence 8876432 2222 223556688888888878888888888776555555433221110 001111111111 3444
Q ss_pred Ee-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE--EeccCCCCeeEEEEe
Q 009059 450 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAAS 526 (545)
Q Consensus 450 ~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~s 526 (545)
|. .|.|.+..+... ....+.++.+|...+.++.|.+....|+++..|..+.+||+-.++-. .+.+|...|..+...
T Consensus 171 Gd~~gqvt~lr~~~~-~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQN-GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred cccccceEEEEEeec-CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 44 555555554432 23678889999999999999999999999999999999999766555 778999999999988
Q ss_pred CCCCEEEEEeCCCcEEEcC
Q 009059 527 TVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 527 pd~~~las~s~Dg~I~iWd 545 (545)
+--+.|.+++.||.|.+|+
T Consensus 250 ~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhheeeeeccCCCeEEEEe
Confidence 8889999999999999996
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=1.4e-10 Score=128.47 Aligned_cols=210 Identities=16% Similarity=0.236 Sum_probs=165.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec--cCCee
Q 009059 317 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGAT 394 (545)
Q Consensus 317 ~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~--~~~v~ 394 (545)
+..+.....++...-|..+.... ..+.+-..|.++.-+|....++ +|+.||.|++|....+..+..+.. ...++
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~---~~k~~v~~v~r~~sHp~~~~Yl-tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vt 2255 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV---MIKHPVENVRRMTSHPSDPYYL-TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVT 2255 (2439)
T ss_pred cccCCcccCCccccceeccccee---EeecccCceeeecCCCCCceEE-ecCCCceEEEEeccCCCeEEEeeccCcchhh
Confidence 34455555566666666554332 2333556788888899876666 999999999999988888877764 35688
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe----CCcEEEEEcCCCCCcceEE
Q 009059 395 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s----dg~I~vwd~~~~~~~~~i~ 470 (545)
.+.|+.+|+.+.++..||.+.+|.+. .++....+.|....+.+.|-. ..+++++ ++.+.+||.--.....+++
T Consensus 2256 r~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence 99999999999999999999999988 667777888999999888865 5555554 4499999987655556666
Q ss_pred EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 471 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+|...++++++.|....|++|+.+|.|++||++..+.+ .+.. +. ...++++|+..|.|+||+
T Consensus 2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence 789999999999999999999999999999999887765 3322 44 567999999999999996
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=1.3e-10 Score=128.80 Aligned_cols=180 Identities=22% Similarity=0.297 Sum_probs=147.2
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
.++.|..++.|.|..+..+...++.-. ..|+.+.|+.+|+.+..+..||.+.+|.+. .+.....+.|.....+++|-
T Consensus 2225 tgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi 2301 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFI 2301 (2439)
T ss_pred ecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeee
Confidence 456789999999999988777766544 889999999999999999999999999987 46777788999999999997
Q ss_pred CCCCEEEEEe---CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC
Q 009059 315 PSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 391 (545)
Q Consensus 315 p~~~~l~t~s---~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~ 391 (545)
. ..+++++ .++.+.+||..-.......-..|.+.++++++-|.. .++++|+.+|.|++||++..+.++.+..
T Consensus 2302 ~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~h~~~~-- 2376 (2439)
T KOG1064|consen 2302 G--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLRHTFQA-- 2376 (2439)
T ss_pred e--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHHHHhhh--
Confidence 5 6777764 478999999754332222337899999999999984 6777999999999999998888777763
Q ss_pred CeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec
Q 009059 392 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 429 (545)
Q Consensus 392 ~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~ 429 (545)
+. ...+++.+...|.++||++..-..++++.
T Consensus 2377 ------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2377 ------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred ------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 33 44788999999999999998876666554
No 281
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=8.6e-09 Score=106.26 Aligned_cols=237 Identities=14% Similarity=0.194 Sum_probs=172.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC------------CEEEEEeCCCeEEEE
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL------------SRLATSSADRTVRVW 332 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~------------~~l~t~s~dg~I~vw 332 (545)
.-.++.|+|.| +||.|+. ..|.|-|..+.+.+..++.|...|+.++|.|.. -+||++...|.|.+|
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 35678999887 8888875 588999999999999999999999999998731 257778888999999
Q ss_pred ECCCCCeeeeEeccCcccEEEEEEeCC---CCcEEEEEcCCCcEEEEECCCCceeeEEeccCC-eeEEEEeC-CCCEEEE
Q 009059 333 DTENPDYSLRTFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQP-RLGRILA 407 (545)
Q Consensus 333 d~~~~~~~~~~~~~h~~~V~~l~~~p~---~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~-v~~l~~sp-~~~~l~~ 407 (545)
|...... +..+..|..++..++|.+. ..++++.-....+|.+|+..+|+....+..... ..|+.+.| +...+.+
T Consensus 95 d~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 95 DFVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred Eehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 9987664 6677888899999999763 335665666678999999999999887775544 45688888 4456666
Q ss_pred EECCCeEEEEECCC-------CEEEEEecCCCC----------------C---------EEEEEEcCCCCEEE-EEeCCc
Q 009059 408 AAIENYISILDVET-------QVCRLKLQGHKN----------------Q---------VHSVCWNTSGEYLA-SVSDEL 454 (545)
Q Consensus 408 ~~~dg~I~i~d~~~-------~~~~~~~~~h~~----------------~---------I~~l~~sp~g~~l~-s~sdg~ 454 (545)
.+..|.|.+.+.-. ++....-..|.+ . ...++|+|.-+.++ ......
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 77778777766421 222222222221 0 11245677655444 444888
Q ss_pred EEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC--CEEEEEEcCCeEEEEeCCC
Q 009059 455 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF--PSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 455 I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~--~~l~~~~~dg~I~iwd~~~ 507 (545)
+.|+|++-. .++.......+.+.-+.+-|+. ..|++.-.+|.+.||-.+.
T Consensus 254 llv~dle~~---~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 254 LLVFDLEYE---CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eEEEcchhh---ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 999999765 6676666666666666666655 5799999999999996654
No 282
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.08 E-value=1.1e-06 Score=84.41 Aligned_cols=218 Identities=14% Similarity=0.177 Sum_probs=146.1
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCCeee-eEe
Q 009059 268 SCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-PSLSRLATSSADRTVRVWDTENPDYSL-RTF 344 (545)
Q Consensus 268 ~l~~sp-dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s-p~~~~l~t~s~dg~I~vwd~~~~~~~~-~~~ 344 (545)
+++|.+ ++.++++--..+.|..|+..+++....-. .. ...+++. +++ .|+.+..++ +.++|..+++... ...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-PG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-SS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-CC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578888 77777777778999999998876654222 22 6677777 564 555555554 5566988765422 122
Q ss_pred c--c-CcccEEEEEEeCCCCcEEEEEcCC--------CcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEE-CCC
Q 009059 345 T--G-HSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IEN 412 (545)
Q Consensus 345 ~--~-h~~~V~~l~~~p~~~~ll~s~s~d--------g~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg 412 (545)
. . .....+.+++.++|. +.++.... |.|..++.. ++.......-...+.++|+|+++.|+++. ..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence 1 1 345788999999986 55454322 568888887 66655555556788999999998887655 478
Q ss_pred eEEEEECCC--C-----EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEE
Q 009059 413 YISILDVET--Q-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 484 (545)
Q Consensus 413 ~I~i~d~~~--~-----~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~ 484 (545)
.|..|++.. . +....+....+..-.+++..+|++.++.. .+.|.+++.. + +.+..+......+++|+|
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEEEE
Confidence 899999853 2 11222333333588999999999887766 7899999976 4 566666655568999999
Q ss_pred -cCCCCEEEEEEc
Q 009059 485 -HPTFPSLLVIGC 496 (545)
Q Consensus 485 -sp~~~~l~~~~~ 496 (545)
-++.+.|++.+.
T Consensus 233 gg~~~~~L~vTta 245 (246)
T PF08450_consen 233 GGPDGKTLYVTTA 245 (246)
T ss_dssp ESTTSSEEEEEEB
T ss_pred ECCCCCEEEEEeC
Confidence 467677776553
No 283
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=3.1e-08 Score=102.26 Aligned_cols=210 Identities=14% Similarity=0.178 Sum_probs=152.4
Q ss_pred eeEEEEeecCCCCCeEEEEEcCCC------------CEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcC---C
Q 009059 252 TFTEFQLIPASTSKVESCHFSPDG------------KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---S 316 (545)
Q Consensus 252 ~~~~~~~l~~H~~~V~~l~~spdg------------~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp---~ 316 (545)
.++.++.+..|...|+.+.|.|-. -+||++...|.|.|||...+..+..+..|.++|.+++|-+ +
T Consensus 44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~ 123 (1062)
T KOG1912|consen 44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDD 123 (1062)
T ss_pred hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCc
Confidence 345678888999999999998831 2577888889999999999999999999999999999976 3
Q ss_pred C-CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-------CceeeEEe
Q 009059 317 L-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVFK 388 (545)
Q Consensus 317 ~-~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~-------~~~~~~~~ 388 (545)
. ..|+.-....+|.+|+..+++. +..+........|+.+.|-...-++.-+..|.+.+-+.-. ++......
T Consensus 124 Srd~LlaIh~ss~lvLwntdtG~k-~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~s 202 (1062)
T KOG1912|consen 124 SRDVLLAIHGSSTLVLWNTDTGEK-FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITS 202 (1062)
T ss_pred chheeEEecCCcEEEEEEccCCce-eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEec
Confidence 3 4667777788999999999886 5555555567778998886555555555567666655421 11111110
Q ss_pred c-cC-----------------C--------eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcC
Q 009059 389 C-QS-----------------G--------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 442 (545)
Q Consensus 389 ~-~~-----------------~--------v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp 442 (545)
. .. + ...++|+|.-+.++.......+.++|++-..++....-..+.+.-+.|-|
T Consensus 203 d~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP 282 (1062)
T KOG1912|consen 203 DHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLP 282 (1062)
T ss_pred CccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEecc
Confidence 0 00 0 12467888878888888899999999998888877766677777777777
Q ss_pred CC--CEEEEEe-CCcEEEEEcCC
Q 009059 443 SG--EYLASVS-DELVRVWSIGS 462 (545)
Q Consensus 443 ~g--~~l~s~s-dg~I~vwd~~~ 462 (545)
++ ..|++.. ||.+.+|-.+.
T Consensus 283 ~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 283 DPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred CCCcceEEEEecCCeEEEEEeec
Confidence 65 4666666 88888886543
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.08 E-value=4.9e-10 Score=114.56 Aligned_cols=207 Identities=20% Similarity=0.285 Sum_probs=151.9
Q ss_pred EEeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCC-eEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 256 FQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spd-g~~latg~~dg~I~lwd~~~~-~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
-..+.+|...|+.+.|.|. ...||+++.|-.|..||+.+- ..+..+..-......|+|+-....+++.+..+.|++||
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence 3467899999999999994 458999999999999999864 34455554455667899987555566666778899999
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc--eeeEEeccCCeeEEEEeCCCCEEEEEE--
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILAAA-- 409 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~~~~-- 409 (545)
++.+..++..+++|...|+.++|+.-....+.+++.||+|++||..... ..+......++..-++.|-|.-.++--
T Consensus 187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~ 266 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV 266 (1081)
T ss_pred ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecccc
Confidence 9999988999999999999999987666677799999999999987543 334444455666666666443322221
Q ss_pred CCCeEEEEE---------CCC-CEEEEEecCCCCCEEEEEEcCCC----------CEEEEEe-CCcEEEEEcCC
Q 009059 410 IENYISILD---------VET-QVCRLKLQGHKNQVHSVCWNTSG----------EYLASVS-DELVRVWSIGS 462 (545)
Q Consensus 410 ~dg~I~i~d---------~~~-~~~~~~~~~h~~~I~~l~~sp~g----------~~l~s~s-dg~I~vwd~~~ 462 (545)
.+..+.+++ ..+ ..+++.|.||.+.|....|-..+ -.|++-+ |..+++|-+.+
T Consensus 267 G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 267 GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 122333333 332 36789999999988777774322 2577777 99999998764
No 285
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.08 E-value=7.5e-07 Score=85.50 Aligned_cols=216 Identities=7% Similarity=0.020 Sum_probs=142.9
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEe-CCCCcEEEEEcCCCcEEEEECCCCceeeE
Q 009059 309 TDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGV 386 (545)
Q Consensus 309 ~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~-p~~~~ll~s~s~dg~I~lwd~~~~~~~~~ 386 (545)
.++.|.+ ++.++++-...+.|..|+..++.... +.... ...+++. ++ ..++ .+.. +.+.++|+.+++....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~~~~--~~G~~~~~~~-g~l~-v~~~-~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--IDLPG--PNGMAFDRPD-GRLY-VADS-GGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EESSS--EEEEEEECTT-SEEE-EEET-TCEEEEETTTTEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--EecCC--CceEEEEccC-CEEE-EEEc-CceEEEecCCCcEEEE
Confidence 3578888 66666676678999999998765422 22222 7778888 55 4555 4443 4466679998876655
Q ss_pred Eec------cCCeeEEEEeCCCCEEEEEECC--------CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-
Q 009059 387 FKC------QSGATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 451 (545)
Q Consensus 387 ~~~------~~~v~~l~~sp~~~~l~~~~~d--------g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s- 451 (545)
... ....+.+++.++|+.+++.... |.|+.++.. ++...... .-...+.|+|+|+++.|+.+.
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccc
Confidence 543 1237889999998866655533 568888888 55444333 345679999999999887665
Q ss_pred -CCcEEEEEcCCCCC-c---ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEE
Q 009059 452 -DELVRVWSIGSGSK-G---ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAA 525 (545)
Q Consensus 452 -dg~I~vwd~~~~~~-~---~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~ 525 (545)
.+.|..|++..... . ..+..+.......-.+++..+|+..++....+.|.++|.+ ++.+ .+.-....+++++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 67899999864322 1 1222233323357889999999977777778899999988 6655 34433458999999
Q ss_pred e-CCCCEEEE
Q 009059 526 S-TVNGMVAS 534 (545)
Q Consensus 526 s-pd~~~las 534 (545)
. ++.+.|..
T Consensus 233 gg~~~~~L~v 242 (246)
T PF08450_consen 233 GGPDGKTLYV 242 (246)
T ss_dssp ESTTSSEEEE
T ss_pred ECCCCCEEEE
Confidence 4 66555443
No 286
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.07 E-value=5.6e-08 Score=95.24 Aligned_cols=147 Identities=16% Similarity=0.155 Sum_probs=118.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 009059 260 PASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg~~latg~~dg-~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
-+|.+.|.-..+.-+++-++.|..|| .+-|+|.++++... +...-+.|.++..+++|++++.+.....|-+.|++++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 36888899999999999999999999 99999998876554 44566789999999999999999988999999999987
Q ss_pred eeeeEeccCcccEEEEEEeCCCCcEEEEEcCC----CcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEE
Q 009059 339 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 409 (545)
Q Consensus 339 ~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d----g~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~ 409 (545)
. ...-+...+-|+.++|+|++..+. -+--+ ..|+++|+.+++..........-.+-+|.|++++|..-+
T Consensus 435 v-~~idkS~~~lItdf~~~~nsr~iA-YafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 435 V-RLIDKSEYGLITDFDWHPNSRWIA-YAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred e-eEecccccceeEEEEEcCCceeEE-EecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 5 333344567899999999976554 44334 469999999988777666556667788999998877655
No 287
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=3.9e-09 Score=107.69 Aligned_cols=231 Identities=14% Similarity=0.185 Sum_probs=167.0
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--------------eeeEeccCcccEEEEEEeCCCCcEEEEEcCCC
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 371 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~--------------~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg 371 (545)
....|++|+.+..++++|+.||.++|..+.+... .-+++.||.+.|.-+.|+.+... +.+.+.+|
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK-LTtSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK-LTTSDTSG 93 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc-ccccCCCc
Confidence 4578999999999999999999999998764321 12467899999999999987554 44888999
Q ss_pred cEEEEECCCCceeeEEe---ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEE-EEecCCCCCEEEEEEcCCCCEE
Q 009059 372 EIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYL 447 (545)
Q Consensus 372 ~I~lwd~~~~~~~~~~~---~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~-~~~~~h~~~I~~l~~sp~g~~l 447 (545)
-|.+|-+-.+....... ..+-|.+++|+.+|..+..+..||.|.+=.++..+.- +.+++ .....+.|++|.+.+
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQA 171 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHH
Confidence 99999998776554332 2345889999999999999999999988877654432 12222 234578899999887
Q ss_pred EEEe-CCcEEEEEcCCCCC----cceEEE----EeeCCCceEEEEE--------cCCCCEEEEEEcCCeEEEEeCCCCeE
Q 009059 448 ASVS-DELVRVWSIGSGSK----GECIHE----LSCTGNKFHSCVF--------HPTFPSLLVIGCYETLELWNMTENKT 510 (545)
Q Consensus 448 ~s~s-dg~I~vwd~~~~~~----~~~i~~----~~~~~~~v~~~~~--------sp~~~~l~~~~~dg~I~iwd~~~~~~ 510 (545)
..+- .|.+.+||....-. ..|... +......+..+.| -|+.+.|+++-..|.+.|..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 7777 88999999754211 122111 1122233555555 35788899999999888775544333
Q ss_pred EEeccCCCCeeEEEEeCCCCEEEEEeCCC
Q 009059 511 LTLSAHDKLVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 511 ~~~~~h~~~V~~l~~spd~~~las~s~Dg 539 (545)
..+....-.|....|+++|..||.+|.|.
T Consensus 252 Pvv~dtgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 252 PVVVDTGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred CeEEecccEeecceecCCCcEEEEccCcc
Confidence 33333446788999999999999998763
No 288
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.05 E-value=4.7e-08 Score=89.24 Aligned_cols=249 Identities=9% Similarity=0.020 Sum_probs=163.5
Q ss_pred CCCcEEEEEcCCCe--EEEEeccCCccEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEE
Q 009059 283 HDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 355 (545)
Q Consensus 283 ~dg~I~lwd~~~~~--~~~~l~~h~~~V~~l~~sp-----~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~ 355 (545)
....|-+|++-+.. .+... ..+.|.| ...+||.|+..|...+|...+..........|...|+-+.
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~ 122 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK 122 (344)
T ss_pred ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence 34456677665432 11111 3345554 3458999999999999999876654555444544443322
Q ss_pred EeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCE--EEE-EecCC
Q 009059 356 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQV--CRL-KLQGH 431 (545)
Q Consensus 356 ~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~--~~~-~~~~h 431 (545)
-.-+...-+..++.|.++++.++..+......... -...++.+++++.++++.+....|..|.+.... .+. .....
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t 202 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT 202 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence 22222333447788999999988755443333222 237889999999999999999999999887542 222 23334
Q ss_pred CCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcc--eEEEEeeCCCceEEEEEcCCCC--EEEEEEcCCeEEEEeCC
Q 009059 432 KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE--CIHELSCTGNKFHSCVFHPTFP--SLLVIGCYETLELWNMT 506 (545)
Q Consensus 432 ~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~--~i~~~~~~~~~v~~~~~sp~~~--~l~~~~~dg~I~iwd~~ 506 (545)
.+.-.+..|+.....+|++. ||.+.|||++...... ...+-..|.+.++.|.|++.|. .|+..-.-+.+.+.|++
T Consensus 203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 55667889999999999999 9999999998753221 1222345788999999998774 35555555689999999
Q ss_pred CCeEEE--------eccCC-CCeeEEEEeCCCCEEEEEeCC
Q 009059 507 ENKTLT--------LSAHD-KLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 507 ~~~~~~--------~~~h~-~~V~~l~~spd~~~las~s~D 538 (545)
+++... ...|. ..|..-.|+.++..+.+.+++
T Consensus 283 ~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 283 NYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred cCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 886541 12233 337778888777655555443
No 289
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.01 E-value=3.7e-07 Score=87.05 Aligned_cols=215 Identities=12% Similarity=0.016 Sum_probs=137.1
Q ss_pred CCcEEEEEcCCCeEEEEeccC--CccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEE-EEEeCCC
Q 009059 284 DKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS-LDFHPSK 360 (545)
Q Consensus 284 dg~I~lwd~~~~~~~~~l~~h--~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~-l~~~p~~ 360 (545)
+|.|..||..+++.+....-- .....+. ..+++.++++++.++.|..||..+++. +..+.. ...+.. .... +
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~-~W~~~~-~~~~~~~~~~~--~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKV-LWRFDL-PGPISGAPVVD--G 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEE-EEEEEC-SSCGGSGEEEE--T
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCE-EEEeec-cccccceeeec--c
Confidence 688999999999999777431 1222221 223566788888999999999998876 433332 111111 2222 2
Q ss_pred CcEEEEEcCCCcEEEEECCCCceeeEE-eccC----CeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCC-
Q 009059 361 EDLLCSCDNNSEIRYWSINNGSCAGVF-KCQS----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ- 434 (545)
Q Consensus 361 ~~ll~s~s~dg~I~lwd~~~~~~~~~~-~~~~----~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~- 434 (545)
..++ .+..++.|+.+|..+|+.+... .... ..........++.++++..++.|..+|+++|+.+.........
T Consensus 77 ~~v~-v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 77 GRVY-VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TEEE-EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred cccc-cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 3444 5556789999999999999884 3221 1222333333788999999999999999999998887664322
Q ss_pred ---------EEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 435 ---------VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 435 ---------I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
+..-....++ .++.+. ++.+..+|+.++ ..+.... ...+.. .....+..|++++.++.|.+||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg---~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG---EKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT---EEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC---CEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEE
Confidence 1222333345 555555 775444499887 3332222 222222 2456777788888999999999
Q ss_pred CCCCeEE
Q 009059 505 MTENKTL 511 (545)
Q Consensus 505 ~~~~~~~ 511 (545)
+++++.+
T Consensus 229 ~~tG~~~ 235 (238)
T PF13360_consen 229 LKTGKVV 235 (238)
T ss_dssp TTTTEEE
T ss_pred CCCCCEE
Confidence 9999875
No 290
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=2.5e-09 Score=106.03 Aligned_cols=207 Identities=14% Similarity=0.260 Sum_probs=146.9
Q ss_pred EEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC------eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC
Q 009059 298 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 371 (545)
Q Consensus 298 ~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~------~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg 371 (545)
+..+.+|...|..++--.+.+-+++++.|++|++|.++... .+..++..|+.+|.++.|..+.. .+++| ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec--cC
Confidence 35677999999999888888899999999999999987432 24568889999999999998743 44455 89
Q ss_pred cEEEEECCCCceeeEEe---ccCCeeEEEEeC--CCCEEEEE-ECCCeEEEEECCCCEEEEEec-----CCCCCEEEEEE
Q 009059 372 EIRYWSINNGSCAGVFK---CQSGATQMRFQP--RLGRILAA-AIENYISILDVETQVCRLKLQ-----GHKNQVHSVCW 440 (545)
Q Consensus 372 ~I~lwd~~~~~~~~~~~---~~~~v~~l~~sp--~~~~l~~~-~~dg~I~i~d~~~~~~~~~~~-----~h~~~I~~l~~ 440 (545)
.|.+||.--++.+.... .++.+..+...+ +...++++ +.+.+|+++|.+...-...++ +....+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999987777665332 122333343333 33344455 458899999999876555443 34567899999
Q ss_pred cCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE-EeCCCCeEE
Q 009059 441 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL-WNMTENKTL 511 (545)
Q Consensus 441 sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i-wd~~~~~~~ 511 (545)
.+.|++++++- .|+|.+.|.+++ ..+..+.........++ .|....|+....|.++.+ |-...+...
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G---~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh 953 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNG---KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMH 953 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCC---ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeee
Confidence 99999999887 999999999998 44444433332222222 345556777777888888 876665443
No 291
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.96 E-value=7.2e-07 Score=91.97 Aligned_cols=254 Identities=11% Similarity=0.023 Sum_probs=155.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccE---
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--- 351 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V--- 351 (545)
+..++.++.++.++.+|.++|+.+............... .+..++.+..++.|..+|..+++. +..+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAV-KWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCE-eeeecCCCCccccc
Confidence 456777888999999999999998776543321111122 244677788899999999998876 33332211000
Q ss_pred --EEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC--------eeEEEEeC--CCCEEEEEECCCeEEEEEC
Q 009059 352 --MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--------ATQMRFQP--RLGRILAAAIENYISILDV 419 (545)
Q Consensus 352 --~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~--------v~~l~~sp--~~~~l~~~~~dg~I~i~d~ 419 (545)
...... +.. ++.+..+|.+..+|..+++.+........ ...+..+| .++.+++++.+|.++.+|.
T Consensus 197 ~~~sP~v~--~~~-v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 197 GESAPATA--FGG-AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred CCCCCEEE--CCE-EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 111111 123 44667789999999999987766543211 00111122 3577888889999999999
Q ss_pred CCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC-CCceEEEEEcCCCCEEEEEEcC
Q 009059 420 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCY 497 (545)
Q Consensus 420 ~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~-~~~v~~~~~sp~~~~l~~~~~d 497 (545)
.+++.+...... ....+.. .+..|+.++ ++.+..+|..+++ .+-..... .....+..+ .+..|++++.+
T Consensus 274 ~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~ 344 (394)
T PRK11138 274 RSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGV---ELWSQSDLLHRLLTAPVL--YNGYLVVGDSE 344 (394)
T ss_pred CCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCc---EEEcccccCCCcccCCEE--ECCEEEEEeCC
Confidence 999877654321 1112222 344455555 8999999998873 22221111 111122222 24568899999
Q ss_pred CeEEEEeCCCCeEE-EeccCCCCee-EEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 498 ETLELWNMTENKTL-TLSAHDKLVS-SLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 498 g~I~iwd~~~~~~~-~~~~h~~~V~-~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|.|+++|..+++.+ ...-....+. ...+ .+..|+.++.||.|+.++
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence 99999999999887 3332222232 2223 245788889999988763
No 292
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.94 E-value=6.9e-09 Score=96.34 Aligned_cols=232 Identities=18% Similarity=0.258 Sum_probs=148.0
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee----eeEeccCc------------ccEEEEEEeCC-CCcEEEEE
Q 009059 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----LRTFTGHS------------TTVMSLDFHPS-KEDLLCSC 367 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~----~~~~~~h~------------~~V~~l~~~p~-~~~ll~s~ 367 (545)
...|+++.|...|.||++|...|.|.+|.-+....+ +..+.+|. ..|..|.|..+ +..-+...
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 456999999999999999999999999987643311 12344443 46788888654 33344466
Q ss_pred cCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEE---------CCCeEEEEECCCCEEEEE-ecCCCCCEEE
Q 009059 368 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA---------IENYISILDVETQVCRLK-LQGHKNQVHS 437 (545)
Q Consensus 368 s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~---------~dg~I~i~d~~~~~~~~~-~~~h~~~I~~ 437 (545)
..|.+|++|.+......-.-. .....---+|.++-+.+.. .|..|... +.+. -..|...|++
T Consensus 106 tNdktiKlWKiyeknlk~va~--nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~------p~rvyaNaH~yhiNS 177 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAE--NNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK------PCRVYANAHPYHINS 177 (460)
T ss_pred cCCceeeeeeeecccchhhhc--cccccccccccCCCcCCHHHhhcccccccceEEEec------cceeccccceeEeee
Confidence 679999999997543211111 1111111111111111000 01111111 1111 2458888999
Q ss_pred EEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCC-----CceEEEEEcCCC-CEEEEEEcCCeEEEEeCCCCeEE
Q 009059 438 VCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG-----NKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 438 l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~-----~~v~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
+.|..|...++++.|-.|.+|++.-....-.+..++.|. .-|++..|+|.. ..+...++.|.|++-|++...+.
T Consensus 178 iS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 178 ISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred eeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 999999999999888899999987654334445555554 347888999965 45667778899999999843211
Q ss_pred ---------Eec--------cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 512 ---------TLS--------AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 512 ---------~~~--------~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+. .-...|..+.|+++|+|+++-+. -+|+|||
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 111 12356888999999999988765 5799997
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.90 E-value=1.1e-06 Score=81.65 Aligned_cols=227 Identities=17% Similarity=0.180 Sum_probs=133.1
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCC--eEEEE---eccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 269 CHFSPDGKLLATGGHDKKAVLWCTESF--TVKST---LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 269 l~~spdg~~latg~~dg~I~lwd~~~~--~~~~~---l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
++.+.||++||.- .|..|.|=..+.. ..+.. .+...-.=.-++|+||+.+||.+...|+|++||+.... +..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~--lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE--LFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce--eEE
Confidence 6778899999876 4777877654431 11122 22233345779999999999999999999999998532 222
Q ss_pred ecc-------CcccEEEEEEeCCC-----CcEEEEEcCCCcEEEEECCC-----CceeeEEe----ccCCeeEEEEeCCC
Q 009059 344 FTG-------HSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINN-----GSCAGVFK----CQSGATQMRFQPRL 402 (545)
Q Consensus 344 ~~~-------h~~~V~~l~~~p~~-----~~ll~s~s~dg~I~lwd~~~-----~~~~~~~~----~~~~v~~l~~sp~~ 402 (545)
+.. -...|..+.|.+-. ...|++-..+|.++-|-+.. .+....+. ...+|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 221 23567777775432 12333445577777776532 22333333 24579999999998
Q ss_pred CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEc---CCCCEEEEEeCC------cEEEEEcCCCCCcceEEEEe
Q 009059 403 GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN---TSGEYLASVSDE------LVRVWSIGSGSKGECIHELS 473 (545)
Q Consensus 403 ~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~s---p~g~~l~s~sdg------~I~vwd~~~~~~~~~i~~~~ 473 (545)
+.|++++.... +.+. -......+++-..- |..+.+....|+ +..+|.+-+. .......
T Consensus 160 ~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~---~~fs~~~ 226 (282)
T PF15492_consen 160 RLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF---KFFSRQG 226 (282)
T ss_pred CEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce---eeeeccc
Confidence 88888876332 0000 00011122222111 111111111111 1123332221 1111112
Q ss_pred eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 474 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 474 ~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
.....|..+..+|||..|++...+|.|.+|++..-+..
T Consensus 227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 34678999999999999999999999999999887665
No 294
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=1.2e-09 Score=113.71 Aligned_cols=265 Identities=14% Similarity=0.182 Sum_probs=178.1
Q ss_pred eeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCC--e
Q 009059 251 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--T 328 (545)
Q Consensus 251 ~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg--~ 328 (545)
.+|+.+++++.|+...+|++|+-+.+.|+.|+..|.|++|++.+|........|..+|+.+.=+.+|..+++.+.-. .
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence 36778899999999999999999999999999999999999999999999999999999999999999877765433 4
Q ss_pred EEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-----cCCeeEEEEeCCCC
Q 009059 329 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLG 403 (545)
Q Consensus 329 I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-----~~~v~~l~~sp~~~ 403 (545)
..+|++.+.......|. .-.++.|+.....-+ .|.......+||+.++..+.++-. ...-++..|+|...
T Consensus 1169 saLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~-~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFD----EDKAVKFSNSLQFRA-LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred HHHhccccccCcccccc----ccceeehhhhHHHHH-hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence 78999986444444554 345777876533333 344445688999999887765321 12246788999866
Q ss_pred EEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEE
Q 009059 404 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV 483 (545)
Q Consensus 404 ~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~ 483 (545)
.++- || .+||++..+.++.|...... ..-.|+|+|.-++..+ .|||+++.. .++..... .-..+.
T Consensus 1244 LIln---dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS----EIwD~RTF~---lLh~VP~L--dqc~Vt 1308 (1516)
T KOG1832|consen 1244 LILN---DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS----EIWDMRTFK---LLHSVPSL--DQCAVT 1308 (1516)
T ss_pred eEee---Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec----hhhhhHHHH---HHhcCccc--cceEEE
Confidence 5542 33 58999988777777654422 2335899998888754 589998863 22222110 112344
Q ss_pred EcCCCCEEEEEEc-------------C----CeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEE
Q 009059 484 FHPTFPSLLVIGC-------------Y----ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA 535 (545)
Q Consensus 484 ~sp~~~~l~~~~~-------------d----g~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~ 535 (545)
|...|..++..-. + ...+-||....+.+....-...|..++-.|...+|+..
T Consensus 1309 FNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1309 FNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred eccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence 5555553333220 0 02333444444444333445566677777776666654
No 295
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.5e-08 Score=97.11 Aligned_cols=252 Identities=15% Similarity=0.146 Sum_probs=174.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC---CeEEEEeccCCccEEEEEEcCCCCEEEEEeC-CCeEEEEECCCC
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENP 337 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~---~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~-dg~I~vwd~~~~ 337 (545)
|.+.|+.|..+ -.+++.+++.||.++.|.-.. -+.+..+..|-..|.+++.+-++..+.|.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 67777777655 356999999999999997543 2344566789999999999999999999777 999999999875
Q ss_pred Cee-eeEeccCcccEEEEEEeCC-CC-cEEEEEcCCCcEEEEECCCCceeeE---EeccCCeeEEEEeCCCCEEEEEECC
Q 009059 338 DYS-LRTFTGHSTTVMSLDFHPS-KE-DLLCSCDNNSEIRYWSINNGSCAGV---FKCQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 338 ~~~-~~~~~~h~~~V~~l~~~p~-~~-~ll~s~s~dg~I~lwd~~~~~~~~~---~~~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
... ...+....+.+..+ .++. .. .+.++...++.|.++|-....+... -.+..+|.++.+.+.+..+++....
T Consensus 87 DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred chhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 542 11122122222222 1221 11 3344455788999999876543322 2255789999999999999999999
Q ss_pred CeEEEEECCC------CEEEEE---------ecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEE----
Q 009059 412 NYISILDVET------QVCRLK---------LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE---- 471 (545)
Q Consensus 412 g~I~i~d~~~------~~~~~~---------~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~---- 471 (545)
|.|..|..+. .+.... +........++.|+|++..+.+-+ |..|+++++++++....+.+
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence 9999998873 111111 222345788999999999999988 88999999988743222211
Q ss_pred -------------------------EeeCC-CceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccC
Q 009059 472 -------------------------LSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH 516 (545)
Q Consensus 472 -------------------------~~~~~-~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h 516 (545)
+..++ ..-..++|...+++|+.++--| |++.++.++.+..+.+.
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGK 315 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEecc
Confidence 11111 2235678999999998887765 88999999888755443
No 296
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.86 E-value=1.1e-05 Score=90.63 Aligned_cols=265 Identities=14% Similarity=0.175 Sum_probs=166.0
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCC---CeEEEEeccCCccEEEEE
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTES---FTVKSTLEEHTQWITDVR 312 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~---dg~I~lwd~~~---~~~~~~l~~h~~~V~~l~ 312 (545)
-+.+|+|+-. |.. ..+-..-.+-=.+++|-|.|.+||+.-. ...|.+|.-+. ++....+......|..+.
T Consensus 236 ~R~iRVy~Re-G~L---~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~ 311 (928)
T PF04762_consen 236 RRVIRVYSRE-GEL---QSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELA 311 (928)
T ss_pred eeEEEEECCC-ceE---EeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEE
Confidence 4677888755 321 1111112222346899999999998764 35677776432 222222234567899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCeeee-Eec-cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEEC----CCC-----
Q 009059 313 FSPSLSRLATSSADRTVRVWDTENPDYSLR-TFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI----NNG----- 381 (545)
Q Consensus 313 ~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~-~~~-~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~----~~~----- 381 (545)
|++|+..||....|. |.+|-..+-..-++ .+. .....+..+.|+|.....+.....+|.+..+++ ..+
T Consensus 312 Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~ 390 (928)
T PF04762_consen 312 WNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSP 390 (928)
T ss_pred ECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCc
Confidence 999999999987665 99999987654333 222 223345569999987776666666566655432 211
Q ss_pred -----------c----------------eeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEE--------E
Q 009059 382 -----------S----------------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR--------L 426 (545)
Q Consensus 382 -----------~----------------~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~--------~ 426 (545)
. +...+.....+.+++|++++..+++...||.|.+|........ .
T Consensus 391 ~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~ 470 (928)
T PF04762_consen 391 NDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLS 470 (928)
T ss_pred cCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhh
Confidence 1 1123334567899999999888999999999999985432111 1
Q ss_pred Ee----------cCCCCCEEEEEEcCCCCEEEEEe-C---CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEE
Q 009059 427 KL----------QGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 492 (545)
Q Consensus 427 ~~----------~~h~~~I~~l~~sp~g~~l~s~s-d---g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~ 492 (545)
.+ ......+..++|..+..+++... + ..+.++++........+.........+..+...+....++
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (928)
T PF04762_consen 471 SISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLY 550 (928)
T ss_pred hcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEE
Confidence 11 11234678899988887777666 4 3788888854433334444444455555555555555577
Q ss_pred EEEcCCeEEEEeCCCC
Q 009059 493 VIGCYETLELWNMTEN 508 (545)
Q Consensus 493 ~~~~dg~I~iwd~~~~ 508 (545)
.-..+|.+..++....
T Consensus 551 ~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 551 IQTNDGKVFQLSSDGE 566 (928)
T ss_pred EEECCCEEEEeecCCC
Confidence 7777888876655443
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.84 E-value=2.2e-08 Score=96.38 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=89.5
Q ss_pred EEEcCCCCEEEE---EeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEec
Q 009059 269 CHFSPDGKLLAT---GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 269 l~~spdg~~lat---g~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~ 345 (545)
+.|..+...... .+....+.+|....+... .+-+|-..+++|+|+||+++|+++..|..|+|-.+......-....
T Consensus 113 i~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl 191 (390)
T KOG3914|consen 113 ISFIREDTSVLVADKAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL 191 (390)
T ss_pred eeeeeccceEEEEeecCCceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc
Confidence 444443334333 344556666666654444 3458999999999999999999999999999988876554334456
Q ss_pred cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec
Q 009059 346 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 389 (545)
Q Consensus 346 ~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~ 389 (545)
||+.-|..++..++ ++|++++.|++|++||+.+++++.++..
T Consensus 192 GH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 192 GHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred ccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccch
Confidence 89999999999876 4567999999999999999999877654
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.84 E-value=1.5e-06 Score=89.52 Aligned_cols=255 Identities=8% Similarity=0.054 Sum_probs=151.8
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCc----------cEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----------WIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~----------~V~-~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
+..+++++.++.|.-+|.++|+.+........ .+. .+.. ++..++.++.+|.+..+|.++++. +..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~-~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEV-AWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCC-ccc
Confidence 45777777888999999999988866543220 000 0111 355777888899999999998876 333
Q ss_pred eccCcccEEE-EEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEE--EEeC--CCCEEEEEECCCeEEEEE
Q 009059 344 FTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQM--RFQP--RLGRILAAAIENYISILD 418 (545)
Q Consensus 344 ~~~h~~~V~~-l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l--~~sp--~~~~l~~~~~dg~I~i~d 418 (545)
.... ..+.+ .... + . .++.+..++.|+.+|..+|+.+..+........+ ..+| .++.++++..+|.+..+|
T Consensus 146 ~~~~-~~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 146 TKVA-GEALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ccCC-CceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence 3322 22222 2222 2 3 3446777899999999999998877653221100 0111 235688888899999999
Q ss_pred CCCCEEEEEecCCCC-------CEEEEEEcC--CCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC
Q 009059 419 VETQVCRLKLQGHKN-------QVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 488 (545)
Q Consensus 419 ~~~~~~~~~~~~h~~-------~I~~l~~sp--~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~ 488 (545)
..+++.+........ ....+..+| .+..++.++ ++.+..+|..+++ .+-.... .....+. ..+
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~--~~~~~~~--~~~ 294 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ---IVWKREY--GSVNDFA--VDG 294 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC---EEEeecC--CCccCcE--EEC
Confidence 999987665431110 011111122 233444444 8999999998874 2322211 1111122 245
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEE-EeccCC-CCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 489 PSLLVIGCYETLELWNMTENKTL-TLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 489 ~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~-~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
..+++++.++.++.+|..+++.+ ....-. ....+..+ .+.+|+.++.||.|.+.|
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 66888899999999999998876 222111 11222222 245677788888877653
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.83 E-value=1.9e-06 Score=82.13 Aligned_cols=210 Identities=12% Similarity=0.070 Sum_probs=133.2
Q ss_pred CCeEEEEECCCCCeeeeEecc-C-cccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCC
Q 009059 326 DRTVRVWDTENPDYSLRTFTG-H-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 403 (545)
Q Consensus 326 dg~I~vwd~~~~~~~~~~~~~-h-~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~ 403 (545)
+|+|..||..+++. +....- . .....+..+ ++++.++ +++.++.|+.||..+|+.+..+.....+.... ...++
T Consensus 2 ~g~l~~~d~~tG~~-~W~~~~~~~~~~~~~~~~-~~~~~v~-~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKE-LWSYDLGPGIGGPVATAV-PDGGRVY-VASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEE-EEEEECSSSCSSEEETEE-EETTEEE-EEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCE-EEEEECCCCCCCccceEE-EeCCEEE-EEcCCCEEEEEECCCCCEEEEeecccccccee-eeccc
Confidence 68899999988876 433321 1 122222222 2334455 55789999999999999998888755543332 33447
Q ss_pred EEEEEECCCeEEEEECCCCEEEEEe-cCCC---CCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCc
Q 009059 404 RILAAAIENYISILDVETQVCRLKL-QGHK---NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 478 (545)
Q Consensus 404 ~l~~~~~dg~I~i~d~~~~~~~~~~-~~h~---~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~ 478 (545)
.+++++.++.|+.+|.++++.+... .... ...........+..++++. ++.|..+|+.++ ..+.........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~ 154 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEPR 154 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCCC
Confidence 7888889999999999999998874 3221 1112222222377777777 899999999988 555555443322
Q ss_pred ----------eEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 479 ----------FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 479 ----------v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+..-....++ .++++..++.+..+|+.+++.+- ......+..+ ...++..|+.++.++.|..||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1222223344 68888888854444999999762 2223333332 346778888888999999886
No 300
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.81 E-value=1.4e-06 Score=79.80 Aligned_cols=235 Identities=13% Similarity=0.044 Sum_probs=150.8
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEE-EEeccCCccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccE
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 351 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~-~~l~~h~~~V~~l~~sp~-~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V 351 (545)
...+||.||..|...+|...+.+.. .....|...|+-+.-..+ ...+..++.|.++++.+++-+........ ..-.+
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~-~~~~~ 161 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN-QNLTQ 161 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec-cccce
Confidence 3458999999999999998865443 333445444433322222 23567778899999988875432111111 11238
Q ss_pred EEEEEeCCCCcEEEEEcCCCcEEEEECCCC-ceeeE-Ee--ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEE-
Q 009059 352 MSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGV-FK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL- 426 (545)
Q Consensus 352 ~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~-~~~~~-~~--~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~- 426 (545)
.++.+++++..+. +.+....|.+|.+... +.+.. .. ....-.+..|+.....++++..||.+.|||++......
T Consensus 162 ns~~~snd~~~~~-~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 162 NSLHYSNDPSWGS-SVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeEEcCCCceEE-EecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 8999999976555 5555778999988753 22222 22 23446678899988899999999999999998653322
Q ss_pred ----EecCCCCCEEEEEEcCCCC--EEEEEe-CCcEEEEEcCCCCCcceEEEEe-----eCCCceEEEEEcCCCCEEEEE
Q 009059 427 ----KLQGHKNQVHSVCWNTSGE--YLASVS-DELVRVWSIGSGSKGECIHELS-----CTGNKFHSCVFHPTFPSLLVI 494 (545)
Q Consensus 427 ----~~~~h~~~I~~l~~sp~g~--~l~s~s-dg~I~vwd~~~~~~~~~i~~~~-----~~~~~v~~~~~sp~~~~l~~~ 494 (545)
+-..|.+.+..+.|++.|. +|.... -+.+.+.|+++....+.+.... .....|....|..++..+.+.
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK 320 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence 2234889999999998763 444444 6689999999886544443222 112336677777777666555
Q ss_pred EcCCeEEEEeCCCCeEE
Q 009059 495 GCYETLELWNMTENKTL 511 (545)
Q Consensus 495 ~~dg~I~iwd~~~~~~~ 511 (545)
..+ .+.-|++......
T Consensus 321 ~e~-~~ae~ni~srsR~ 336 (344)
T KOG4532|consen 321 NEL-QGAEYNILSRSRF 336 (344)
T ss_pred cch-hhheeecccccee
Confidence 544 3455666554443
No 301
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=5.5e-07 Score=86.83 Aligned_cols=249 Identities=14% Similarity=0.126 Sum_probs=146.3
Q ss_pred EEEEEcCCCeEEEEeccCCccEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEE
Q 009059 287 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 365 (545)
Q Consensus 287 I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~-~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~ 365 (545)
|++.+..+.+....+..|...|.+++|+|..+ ++..++.+..|+|.|+++... +..+..+ ..+++++|.-+..++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-VSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee-eeheecc-CCceeeeeccCCcceeE
Confidence 77777777777777788999999999999766 788999999999999998654 6777766 78999999999999999
Q ss_pred EEcCCCcEEEEECCCCceee-EEe---ccCCeeEEEE------eCCCCEEEEEECCCeEEEEECC----CCEEEEEecCC
Q 009059 366 SCDNNSEIRYWSINNGSCAG-VFK---CQSGATQMRF------QPRLGRILAAAIENYISILDVE----TQVCRLKLQGH 431 (545)
Q Consensus 366 s~s~dg~I~lwd~~~~~~~~-~~~---~~~~v~~l~~------sp~~~~l~~~~~dg~I~i~d~~----~~~~~~~~~~h 431 (545)
.|..+|.|.+||++..+-.. .+. ...++..++. .+.++.+++...+ +..|+.. ...++..+. .
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-P 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-C
Confidence 99999999999998644221 111 1123333332 2233444433332 2233322 222222222 2
Q ss_pred CCCEEEEEEcCCCCEEEEEe-C-C----------------cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 432 KNQVHSVCWNTSGEYLASVS-D-E----------------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 432 ~~~I~~l~~sp~g~~l~s~s-d-g----------------~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
.+...++.+.+..+.++... . . ...||..+..-.+.....+ ..-..+.-.++.++|+.
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl----~t~~ai~~~~~nn~iv~ 405 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKL----STTQAIRAVEDNNYIVV 405 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCccccc----ccccceeccccccEEEE
Confidence 33444455554334333332 1 1 1222222111000000000 00011222344454444
Q ss_pred EEc-CCeEEEEeCCCCeEEEeccCCCCeeEEEEeCC--CCEEEEEeCCCcEEEcC
Q 009059 494 IGC-YETLELWNMTENKTLTLSAHDKLVSSLAASTV--NGMVASASHDKCVKIWK 545 (545)
Q Consensus 494 ~~~-dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd--~~~las~s~Dg~I~iWd 545 (545)
.+. .+.+.+||..+.+.+.......+|.+++.... +.||++-. |..++||+
T Consensus 406 ~gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk 459 (463)
T KOG1645|consen 406 VGDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK 459 (463)
T ss_pred ecCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence 443 34899999999999866666788888875432 34666665 45677764
No 302
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.76 E-value=2.1e-05 Score=75.54 Aligned_cols=229 Identities=14% Similarity=0.122 Sum_probs=151.0
Q ss_pred EEEEEcC-CCCEEEEEeCCC-cEEEEEcCCCeEEEEeccCCccE--EEEEEcCCCCEEEEEeC-----CCeEEEEECCCC
Q 009059 267 ESCHFSP-DGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSA-----DRTVRVWDTENP 337 (545)
Q Consensus 267 ~~l~~sp-dg~~latg~~dg-~I~lwd~~~~~~~~~l~~h~~~V--~~l~~sp~~~~l~t~s~-----dg~I~vwd~~~~ 337 (545)
..++.+| .+..+|.+-.-| ...+||..+++....+....+.- -.-.|++||++|++.-. .|.|-|||....
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 3578888 566677776665 46789999998887765433321 13579999999998744 589999999955
Q ss_pred CeeeeEeccCcccEEEEEEeCCCCcEEEEEc-----------------CCCcEEEEECCCCceeeEEec-----cCCeeE
Q 009059 338 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----------------NNSEIRYWSINNGSCAGVFKC-----QSGATQ 395 (545)
Q Consensus 338 ~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s-----------------~dg~I~lwd~~~~~~~~~~~~-----~~~v~~ 395 (545)
-..+..+..|.-....+.+.|+++.|++.-+ .+-.+.+.|..+|+.+..... ...+..
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 5557788878777788889999977765421 123466677888888877554 235889
Q ss_pred EEEeCCCCEEEEEECCC-------eEEEEECCCCEEEEEe-----cCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcC
Q 009059 396 MRFQPRLGRILAAAIEN-------YISILDVETQVCRLKL-----QGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIG 461 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg-------~I~i~d~~~~~~~~~~-----~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~ 461 (545)
+++.++|..++..-..| -|.+++....-..... ..-...|-+|+++.++.++++.+ .+.+.+||..
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~ 247 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAA 247 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECC
Confidence 99999965555544433 2444544332111111 12346899999999999998888 6699999998
Q ss_pred CCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE
Q 009059 462 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 502 (545)
Q Consensus 462 ~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i 502 (545)
++ ..+.... -..+-.++..+++ +++.+..|.+..
T Consensus 248 tg---~~~~~~~--l~D~cGva~~~~~--f~~ssG~G~~~~ 281 (305)
T PF07433_consen 248 TG---RLLGSVP--LPDACGVAPTDDG--FLVSSGQGQLIR 281 (305)
T ss_pred CC---CEeeccc--cCceeeeeecCCc--eEEeCCCccEEE
Confidence 87 4443332 1233444444555 455555554433
No 303
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=5.8e-09 Score=108.81 Aligned_cols=201 Identities=17% Similarity=0.267 Sum_probs=150.7
Q ss_pred CCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC-c
Q 009059 294 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-E 372 (545)
Q Consensus 294 ~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg-~ 372 (545)
.++...++..|....+|++|+-+.+.|+.|+..|.|++|++.++.. ...+.+|...|+.+.-+.+|..++.+.+... -
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCch
Confidence 3456677888999999999999999999999999999999999875 7788899999999999999988886665554 5
Q ss_pred EEEEECCC-CceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEe-cC---CCCCEEEEEEcCCCCEE
Q 009059 373 IRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-QG---HKNQVHSVCWNTSGEYL 447 (545)
Q Consensus 373 I~lwd~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~-~~---h~~~I~~l~~sp~g~~l 447 (545)
..+|++.. +...+.| ....++.|+.....-+.|+......+||++++....++ .+ ....-++..|+|+..++
T Consensus 1169 saLW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred HHHhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 77899864 3334444 34567888876555667777788999999998776653 22 22234788899998887
Q ss_pred EEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 448 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 448 ~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
+- || .+||++.. ..++.+.... ....-.|+|.|..++.-+ .|||+++.+.+
T Consensus 1246 ln--dG--vLWDvR~~---~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1246 LN--DG--VLWDVRIP---EAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred ee--Cc--eeeeeccH---HHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 64 44 58999876 4555544322 222347999999887754 58999887765
No 304
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.72 E-value=1.9e-07 Score=84.95 Aligned_cols=166 Identities=10% Similarity=0.171 Sum_probs=106.7
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-EEEEeccCCccEEEEEEcCCCCEEEEEeC-----CCe
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSA-----DRT 328 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~-~~~~l~~h~~~V~~l~~sp~~~~l~t~s~-----dg~ 328 (545)
.+.++..|.++-.+-+.+-.++.+++++.||.+.+++.+... ....+..-...--+.++...+..+.++.. -+.
T Consensus 81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~ 160 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDN 160 (319)
T ss_pred ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccc
Confidence 344455566655555556667789999999999999976511 11112111111112223334444444321 234
Q ss_pred EEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee-EE-eccCCeeEEEEeCC-CCEE
Q 009059 329 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VF-KCQSGATQMRFQPR-LGRI 405 (545)
Q Consensus 329 I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~-~~-~~~~~v~~l~~sp~-~~~l 405 (545)
.+.|+++..+..+..... ...|.+++-+|....++++|+.||.+-+||.++..... .+ .+...+..+.|+|. ...|
T Consensus 161 ~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred eeeecccccccccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 566776643322222222 23499999999999999999999999999999874322 22 24567899999994 5679
Q ss_pred EEEECCCeEEEEECCC
Q 009059 406 LAAAIENYISILDVET 421 (545)
Q Consensus 406 ~~~~~dg~I~i~d~~~ 421 (545)
++++.||.+..||..+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 9999999999999876
No 305
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=6.3e-07 Score=86.46 Aligned_cols=246 Identities=15% Similarity=0.140 Sum_probs=153.8
Q ss_pred eEEEEeecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC-CEEEEEeCCCeEE
Q 009059 253 FTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVR 330 (545)
Q Consensus 253 ~~~~~~l~~H~~~V~~l~~spdg~-~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~-~~l~t~s~dg~I~ 330 (545)
|+....+.+|...|..++|||..+ +|..++.+.+|+|.|+++...+..+..| ..+++++|.-|. .+|+.|...|.|.
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence 334557888999999999999776 7888999999999999998888888877 789999998754 5777888899999
Q ss_pred EEECCCCCeeeeEecc--CcccEEEEEEeC------CCCcEEEEEcCCCcEEEEECCC----CceeeEEeccCCeeEEEE
Q 009059 331 VWDTENPDYSLRTFTG--HSTTVMSLDFHP------SKEDLLCSCDNNSEIRYWSINN----GSCAGVFKCQSGATQMRF 398 (545)
Q Consensus 331 vwd~~~~~~~~~~~~~--h~~~V~~l~~~p------~~~~ll~s~s~dg~I~lwd~~~----~~~~~~~~~~~~v~~l~~ 398 (545)
|||++.....+..+.+ ...+|..++.-+ .+. +++.... .+..|++.. .-++..+..++...++.+
T Consensus 262 vyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy 338 (463)
T KOG1645|consen 262 VYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQY 338 (463)
T ss_pred EEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeee
Confidence 9999977655544433 223455544322 222 3322222 255666542 223334444555667777
Q ss_pred eCCCCEEEEEECCC-------e-EEEEECCCCEEEEEec-CC-CCC------EEEEEEcCCCCEEEEEe--CCcEEEEEc
Q 009059 399 QPRLGRILAAAIEN-------Y-ISILDVETQVCRLKLQ-GH-KNQ------VHSVCWNTSGEYLASVS--DELVRVWSI 460 (545)
Q Consensus 399 sp~~~~l~~~~~dg-------~-I~i~d~~~~~~~~~~~-~h-~~~------I~~l~~sp~g~~l~s~s--dg~I~vwd~ 460 (545)
.+..+.+++....+ . +.-.|..+|..+...+ ++ ... -..+.-.++..+|+..+ .+.+.+||.
T Consensus 339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~ 418 (463)
T KOG1645|consen 339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDP 418 (463)
T ss_pred cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEecc
Confidence 77667777766531 1 1112333443333221 12 110 01122234556666655 448999999
Q ss_pred CCCCCcceEEEEeeCCCceEEEEE-cCCCCEEEEEEcCCeEEEEeCC
Q 009059 461 GSGSKGECIHELSCTGNKFHSCVF-HPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 461 ~~~~~~~~i~~~~~~~~~v~~~~~-sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
.+. +.+.++... .+|..++. .-++.-++..-.|..++||..+
T Consensus 419 ~s~---evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 419 HSF---EVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred chh---heeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 887 666666543 56666653 3445555566666777777654
No 306
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.70 E-value=4.2e-07 Score=95.80 Aligned_cols=181 Identities=17% Similarity=0.255 Sum_probs=142.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEE
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 353 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~ 353 (545)
++..++.|+.-..+..+|+.+.+..+...-....|+-++. ++++|.+|...|+|.+-|..+.+. +.++..|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~-iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFET-IHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCce-eeeeeccccceee
Confidence 4456777888888999999998887776655555666665 678999999999999999998775 8999999999999
Q ss_pred EEEeCCCCcEEEEEcC---------CCcEEEEECCCCceeeEEeccCCeeEEEEeCC-CCEEEEEECCCeEEEEEC---C
Q 009059 354 LDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPR-LGRILAAAIENYISILDV---E 420 (545)
Q Consensus 354 l~~~p~~~~ll~s~s~---------dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~~~~~dg~I~i~d~---~ 420 (545)
++.. | +++++|+. |..|+|||++.-+.+..+..+....-+.|.|. ...+++++..|...+.|. .
T Consensus 223 fDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 223 FDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence 8876 3 45556653 56789999999888877777777777888885 356778888999999993 3
Q ss_pred CC-EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEc
Q 009059 421 TQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 460 (545)
Q Consensus 421 ~~-~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~ 460 (545)
+. ..+..+......+..+++++++..++.+. +|.|.+|.-
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 33 22334444555699999999999999999 999999973
No 307
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.3e-07 Score=90.48 Aligned_cols=223 Identities=15% Similarity=0.124 Sum_probs=155.7
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCeEEEEec--cCCccEEEEEEcC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLE--EHTQWITDVRFSP 315 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~-dg~I~lwd~~~~~~~~~l~--~h~~~V~~l~~sp 315 (545)
|...+.|.-..-.....+..++.|.+.|.+++.+-++.++++.+. |..++++|+++...+.-++ .-.+.+.++ .++
T Consensus 29 DGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~sk 107 (558)
T KOG0882|consen 29 DGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSK 107 (558)
T ss_pred chhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCC
Confidence 334445543333445567888999999999999999999999777 9999999998866653332 122222221 222
Q ss_pred C-C-CEEEE-EeCCCeEEEEECCCCCeee-eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC------Cceee
Q 009059 316 S-L-SRLAT-SSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN------GSCAG 385 (545)
Q Consensus 316 ~-~-~~l~t-~s~dg~I~vwd~~~~~~~~-~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~------~~~~~ 385 (545)
. - ..|+. .-.++.|.|+|-....+.. ..-.-|..+|.++.+++.++..+ +....|.|..|.... .+...
T Consensus 108 Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v-SiD~~gmVEyWs~e~~~qfPr~~l~~ 186 (558)
T KOG0882|consen 108 GDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV-SIDISGMVEYWSAEGPFQFPRTNLNF 186 (558)
T ss_pred CCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee-eccccceeEeecCCCcccCccccccc
Confidence 1 1 13333 3457899999977554333 34456899999999999976555 888889999999873 21222
Q ss_pred EE----------eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC-------------------------
Q 009059 386 VF----------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG------------------------- 430 (545)
Q Consensus 386 ~~----------~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~------------------------- 430 (545)
.+ +......++.|+|++..+.+.+.|..|++++.++++.+..+..
T Consensus 187 ~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRma 266 (558)
T KOG0882|consen 187 ELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMA 266 (558)
T ss_pred cccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhh
Confidence 22 2334578999999999999999999999999999876544321
Q ss_pred -------CC-CCEEEEEEcCCCCEEEEEeCCcEEEEEcCCC
Q 009059 431 -------HK-NQVHSVCWNTSGEYLASVSDELVRVWSIGSG 463 (545)
Q Consensus 431 -------h~-~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~ 463 (545)
|. ..-+.++|...|++|+.++==-|+|.++.++
T Consensus 267 verelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn 307 (558)
T KOG0882|consen 267 VERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTN 307 (558)
T ss_pred HHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecC
Confidence 11 1335678888999999988545899998876
No 308
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.69 E-value=9.5e-06 Score=82.22 Aligned_cols=259 Identities=14% Similarity=0.119 Sum_probs=151.4
Q ss_pred cCCCCEEEEEe---------CCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009059 272 SPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 342 (545)
Q Consensus 272 spdg~~latg~---------~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~ 342 (545)
|||+++++... ..+.+.|||+++++....... ...+....|+|+|+.++... ++.|.+++..++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 67888877742 246789999999766654443 66788999999999999885 67899999876643222
Q ss_pred EeccC----------------cccEEEEEEeCCCCcEEEEEcCCCcEE--------------------------------
Q 009059 343 TFTGH----------------STTVMSLDFHPSKEDLLCSCDNNSEIR-------------------------------- 374 (545)
Q Consensus 343 ~~~~h----------------~~~V~~l~~~p~~~~ll~s~s~dg~I~-------------------------------- 374 (545)
+..+. -+.-..+-|+|++..+++.--++..|.
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 22220 112356789999988776544443333
Q ss_pred ---EEECCCCceeeEE-e-----ccCCeeEEEEeCCCCEEEEEECC-----CeEEEEECCCCEEEEEecC-CCCCE---E
Q 009059 375 ---YWSINNGSCAGVF-K-----CQSGATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQG-HKNQV---H 436 (545)
Q Consensus 375 ---lwd~~~~~~~~~~-~-----~~~~v~~l~~sp~~~~l~~~~~d-----g~I~i~d~~~~~~~~~~~~-h~~~I---~ 436 (545)
++|+.+++....- . ...-+..+.|.+++..+++.-.+ -.+.++|..++.....+.. ....| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 3444444332111 0 11126678898987745554432 2577778877643322221 22222 3
Q ss_pred EEEEc-CCCCEEEEE-e-CC--cEEEEEcCCCCCcceEEEEeeCCCceEE-EEEcCCCCEEEEEEcC-----CeEEEEeC
Q 009059 437 SVCWN-TSGEYLASV-S-DE--LVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCY-----ETLELWNM 505 (545)
Q Consensus 437 ~l~~s-p~g~~l~s~-s-dg--~I~vwd~~~~~~~~~i~~~~~~~~~v~~-~~~sp~~~~l~~~~~d-----g~I~iwd~ 505 (545)
.+.|. +++..++.. . +| .|.+++...+ ....+....-.|.. +.++++++.|+..+.. ..|+..++
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGG----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSS----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccccc----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 45554 666544444 4 77 5666666554 23345545556644 6788888777655553 26777788
Q ss_pred C-CCeEEEeccCCCCeeEEEEeCCCCEEEEEe
Q 009059 506 T-ENKTLTLSAHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 506 ~-~~~~~~~~~h~~~V~~l~~spd~~~las~s 536 (545)
. .+....+......-..+.|||++++++-..
T Consensus 315 ~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 315 DSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 8 777766654444336999999999877543
No 309
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.68 E-value=2.3e-07 Score=89.55 Aligned_cols=157 Identities=19% Similarity=0.216 Sum_probs=108.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eeeEeccCcccEEEEEEeCCCCcEEE--EEcCCCcEEEEECCCCce
Q 009059 308 ITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLC--SCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 308 V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~ll~--s~s~dg~I~lwd~~~~~~ 383 (545)
+..+..++.+++||.+..+....++++..... .+.....-...-+++.|..+....++ ..+....+.+|....+.+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 44456677888888888888777777654332 11111112233344455444344332 233445566666666777
Q ss_pred eeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEe-cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcC
Q 009059 384 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG 461 (545)
Q Consensus 384 ~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~-~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~ 461 (545)
...+.+-.-+..++|+||+.+++++..|..|++-....-..+..+ -||+..|..++.-++.. |++++ |++|++||+.
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDIT 223 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEecc
Confidence 777777788999999999999999999999999888776655554 46999999999976554 55655 9999999999
Q ss_pred CCCC
Q 009059 462 SGSK 465 (545)
Q Consensus 462 ~~~~ 465 (545)
+++.
T Consensus 224 sgk~ 227 (390)
T KOG3914|consen 224 SGKL 227 (390)
T ss_pred cCCc
Confidence 9843
No 310
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.68 E-value=1.7e-05 Score=73.87 Aligned_cols=188 Identities=14% Similarity=0.127 Sum_probs=109.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc-------CCccEEEEEEcCC------CCEEEEEeCCCeEEE
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPS------LSRLATSSADRTVRV 331 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~-------h~~~V~~l~~sp~------~~~l~t~s~dg~I~v 331 (545)
.=.-++||||+.+||.+...|+|++||+...+ +..+.. -...|..+.|.+. ...|++-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 34569999999999999999999999987533 333322 2356777777552 124666678888877
Q ss_pred EECCCC---C-eeeeEe---ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCE
Q 009059 332 WDTENP---D-YSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 404 (545)
Q Consensus 332 wd~~~~---~-~~~~~~---~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~ 404 (545)
|-+..+ + .....+ ..+...|.++.|+|....|++.|.....-..+. ....++++-.+..+..+
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~----------a~~~GLtaWRiL~~~Py 193 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK----------ASSCGLTAWRILSDSPY 193 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc----------ccccCceEEEEcCCCCc
Confidence 765321 1 112222 224678999999998765554444332100000 00112222222221111
Q ss_pred EE--EEECCC------eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q 009059 405 IL--AAAIEN------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 463 (545)
Q Consensus 405 l~--~~~~dg------~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~ 463 (545)
+. ....|+ +..+|.+-+.+...........|..+..+|||.+||+.. +|.|.+|++.+-
T Consensus 194 yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 194 YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 11 111111 112233322222222233567899999999999999999 999999999765
No 311
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.67 E-value=1.1e-05 Score=84.26 Aligned_cols=149 Identities=11% Similarity=0.030 Sum_probs=104.7
Q ss_pred eCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEE---------------------------
Q 009059 357 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--------------------------- 409 (545)
Q Consensus 357 ~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~--------------------------- 409 (545)
.|+|..+....-..+.+.+.|..+.+....+........+.++++++++++.+
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~ 280 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR 280 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH
Confidence 44554444344445677788888888888777777777888888888887775
Q ss_pred -------------CCCeEEEEECCC-----CEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCC----
Q 009059 410 -------------IENYISILDVET-----QVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK---- 465 (545)
Q Consensus 410 -------------~dg~I~i~d~~~-----~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~---- 465 (545)
.++.|.++|.++ ...+..+. -......+.++|||+++++++ +.+|.|+|+.+...
T Consensus 281 iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 281 IEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 124477777776 23333333 455678899999999999888 88999999987532
Q ss_pred -----cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 466 -----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 466 -----~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
...+.+... +......+|.++|....+..-|..|..||+..
T Consensus 360 ~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 KIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 012223332 34445678999998777888899999999876
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.67 E-value=6.5e-06 Score=89.83 Aligned_cols=242 Identities=12% Similarity=0.136 Sum_probs=150.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCCe
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE----NPDY 339 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~----~~~~ 339 (545)
+.|.++.|.-++.-++.+...|.|.+-|.++.... ....-...|.+++|+||+..++..+.++++.+-+.. ..+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 57999999999999999999999999988775433 333456789999999999999999888887764431 1110
Q ss_pred eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC-ceeeEEeccCCeeEEEEeCCCCEEEEEE----CC-Ce
Q 009059 340 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAA----IE-NY 413 (545)
Q Consensus 340 ~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~~~~----~d-g~ 413 (545)
+..-....+....+-|-.....+ -|+ .|.....+.... +..........-+.+.|--+|.++++.. .+ ..
T Consensus 148 -L~~d~~~~sk~v~VGwGrkeTqf--rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 148 -LDADDERKSKFVNVGWGRKETQF--RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred -cccccccccccceecccccceee--ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 10000011223334443322111 221 222222221111 1111112334567799999988888743 23 78
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe----CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCC
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 489 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s----dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~ 489 (545)
|+|||-+ +..-..-....+.-.+++|-|.|.++++.. |+.|.+|.-..-........+.....++..++|..++.
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence 9999987 433222222334457899999999999864 55799998654433333333444445599999999999
Q ss_pred EEEE---EEcCCeEEEEeCCCCeEE
Q 009059 490 SLLV---IGCYETLELWNMTENKTL 511 (545)
Q Consensus 490 ~l~~---~~~dg~I~iwd~~~~~~~ 511 (545)
.|++ ......|++|-+.+....
T Consensus 303 iLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred ceeeeecccccceEEEEEecCeEEE
Confidence 8887 344446999988776543
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.66 E-value=5.3e-05 Score=72.76 Aligned_cols=226 Identities=13% Similarity=0.118 Sum_probs=148.8
Q ss_pred EEEEEEcC-CCCEEEEEeCCC-eEEEEECCCCCeeeeEeccCcccEE--EEEEeCCCCcEEEEE----cCCCcEEEEECC
Q 009059 308 ITDVRFSP-SLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTVM--SLDFHPSKEDLLCSC----DNNSEIRYWSIN 379 (545)
Q Consensus 308 V~~l~~sp-~~~~l~t~s~dg-~I~vwd~~~~~~~~~~~~~h~~~V~--~l~~~p~~~~ll~s~----s~dg~I~lwd~~ 379 (545)
...++.+| ....++.+-.-| ...+||..++.. ...+....+.-. .-.|+++|..|+++- ...|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~-~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQL-LQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCce-eeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 45678888 455666666655 467899988775 333332222211 357999998777542 335789999998
Q ss_pred -CCceeeEEeccC-CeeEEEEeCCCCEEEEEEC------------------CCeEEEEECCCCEEEEE--e--cCCCCCE
Q 009059 380 -NGSCAGVFKCQS-GATQMRFQPRLGRILAAAI------------------ENYISILDVETQVCRLK--L--QGHKNQV 435 (545)
Q Consensus 380 -~~~~~~~~~~~~-~v~~l~~sp~~~~l~~~~~------------------dg~I~i~d~~~~~~~~~--~--~~h~~~I 435 (545)
+.+.+.++...+ +...+.+.|++..|+++-. +-.|.+.|..+++.+.. + ..|.-.|
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 556666665433 4678899999877777641 22477788899987766 4 2377799
Q ss_pred EEEEEcCCCCEEEEEe-CC-------cEEEEEcCCCCCcceEE----EEeeCCCceEEEEEcCCCCEEEEEEcCC-eEEE
Q 009059 436 HSVCWNTSGEYLASVS-DE-------LVRVWSIGSGSKGECIH----ELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLEL 502 (545)
Q Consensus 436 ~~l~~sp~g~~l~s~s-dg-------~I~vwd~~~~~~~~~i~----~~~~~~~~v~~~~~sp~~~~l~~~~~dg-~I~i 502 (545)
..+++.++|..++..- .+ .|.+++.... ...+. ......+.+-+++++.++.++++.+--+ .+.+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 9999999998887765 33 3444443321 11111 0122346789999999999887777655 8999
Q ss_pred EeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 503 WNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 503 wd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
||..+++.+.... -..+..++..+++ ++++.+.-
T Consensus 244 ~d~~tg~~~~~~~-l~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 244 WDAATGRLLGSVP-LPDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred EECCCCCEeeccc-cCceeeeeecCCc-eEEeCCCc
Confidence 9999999884432 2335667766655 66665543
No 314
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.62 E-value=1.3e-07 Score=89.31 Aligned_cols=160 Identities=13% Similarity=0.183 Sum_probs=121.3
Q ss_pred EEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCC-----EEEEEecCCCCCEEEEE
Q 009059 365 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-----VCRLKLQGHKNQVHSVC 439 (545)
Q Consensus 365 ~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~-----~~~~~~~~h~~~I~~l~ 439 (545)
++.+.+-.|-+-|++++.... |...+.|.++.|...++.++.|+..|.|..+|++.+ .+...+. |...|+++.
T Consensus 228 fs~G~sqqv~L~nvetg~~qs-f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS-FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeecccccc-cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhh
Confidence 355567778899998875443 335577888999988899999999999999999865 3444554 899999998
Q ss_pred EcC-CCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEE--EEcCCCCEEEEEEcCCeEEEEeCCCCeEEEecc
Q 009059 440 WNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC--VFHPTFPSLLVIGCYETLELWNMTENKTLTLSA 515 (545)
Q Consensus 440 ~sp-~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~--~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~ 515 (545)
... ++.+|.+.+ +|+|++||++.-+...-+..+.+|-+.-.-+ .+.+....+++++.|-..+||.++.+.++....
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 776 677777777 9999999998774444588888887654443 456677789999999999999999998883322
Q ss_pred -----CCCCeeEEEEe
Q 009059 516 -----HDKLVSSLAAS 526 (545)
Q Consensus 516 -----h~~~V~~l~~s 526 (545)
.+..+.+++|.
T Consensus 386 f~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 386 FPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCccccccccceehh
Confidence 23345666664
No 315
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.61 E-value=1.7e-07 Score=61.48 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=36.0
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 009059 254 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 291 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd 291 (545)
+.+..+++|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45788999999999999999999999999999999997
No 316
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.58 E-value=1.6e-05 Score=81.85 Aligned_cols=221 Identities=12% Similarity=0.134 Sum_probs=123.7
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce
Q 009059 304 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 304 h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~ 383 (545)
..-....+.++|++++++++ .||...|+....... . ..+......|.+.+ . +|+-...+.|.++.--+.+.
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~--k----~~G~g~~~vw~~~n-~-yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRN--K----AFGSGLSFVWSSRN-R-YAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEE--E----EEEE-SEEEE-TSS-E-EEEE-TTS-EEEEETTEE-T
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcc--c----ccCceeEEEEecCc-c-EEEEECCCeEEEEEcCcccc
Confidence 44557889999999998885 577777777432221 1 12455678888853 3 44666688899963333333
Q ss_pred eeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCC
Q 009059 384 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 463 (545)
Q Consensus 384 ~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~ 463 (545)
...+..+..+..+-. |. ++....++.|.+||..+++.+..+... .|..+.|+++|.+++..++..+.|++....
T Consensus 102 ~k~i~~~~~~~~If~---G~-LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 102 VKSIKLPFSVEKIFG---GN-LLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLE 175 (443)
T ss_dssp T-----SS-EEEEE----SS-SEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred ceEEcCCcccceEEc---Cc-EEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence 344554444444444 34 555555569999999999999998743 489999999999999999888888876432
Q ss_pred --------CCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEE
Q 009059 464 --------SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA 535 (545)
Q Consensus 464 --------~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~ 535 (545)
.....+..+......|.+.+|..+ .++..+.. .|+. +-.|+.-.+..-+.++.=+...+..+.|...
T Consensus 176 ~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~ 250 (443)
T PF04053_consen 176 AVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLI 250 (443)
T ss_dssp HHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE
T ss_pred hcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEE
Confidence 000133333333678889999877 34444444 6665 5556665555456677777888877888888
Q ss_pred eCCCcEEEc
Q 009059 536 SHDKCVKIW 544 (545)
Q Consensus 536 s~Dg~I~iW 544 (545)
..|+.|..+
T Consensus 251 Dr~~~v~~~ 259 (443)
T PF04053_consen 251 DRDGNVISY 259 (443)
T ss_dssp -TT--EEEE
T ss_pred ECCCCEEEE
Confidence 888887654
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=2.4e-06 Score=89.38 Aligned_cols=183 Identities=15% Similarity=0.198 Sum_probs=130.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 342 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~ 342 (545)
.+.++|++++ +++|+.|+.+|.|++++... .. .+...|... ..+|.++++|+.||+|.|-.+.+... ..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence 4568888887 67999999999999999754 33 344445543 56899999999999999999887764 33
Q ss_pred EeccCcccEEEEEEeCC----CCcEEEEEcCCCcEEEEECC---CCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEE
Q 009059 343 TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSIN---NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 343 ~~~~h~~~V~~l~~~p~----~~~ll~s~s~dg~I~lwd~~---~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
.+. ...++.+++++|+ ....+++|+.-| +.++.-+ ....+......+.|.++.|.. .+++-..|-.|+
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g---~lIAWand~Gv~ 182 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG---NLIAWANDDGVK 182 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC---cEEEEecCCCcE
Confidence 333 4568999999998 223455888777 7776532 222222334457799999984 488888888899
Q ss_pred EEECCCCEEEEEecCCCCC------EEEEEEcCCCCEEEEEeCCcEEEEEcCC
Q 009059 416 ILDVETQVCRLKLQGHKNQ------VHSVCWNTSGEYLASVSDELVRVWSIGS 462 (545)
Q Consensus 416 i~d~~~~~~~~~~~~h~~~------I~~l~~sp~g~~l~s~sdg~I~vwd~~~ 462 (545)
+||..+++.+..++..... ...+.|.++.+ |+.|-..+|+|..++.
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIKK 234 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEec
Confidence 9999999888776653332 34577876554 5556666788888873
No 318
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.55 E-value=2.6e-07 Score=60.65 Aligned_cols=39 Identities=36% Similarity=0.548 Sum_probs=37.0
Q ss_pred CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 295 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 295 ~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
++++.++.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 319
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.54 E-value=0.00041 Score=72.04 Aligned_cols=243 Identities=14% Similarity=0.096 Sum_probs=139.1
Q ss_pred eEEEEEcCCCCEEEEEe-CC----CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCC-----------eE
Q 009059 266 VESCHFSPDGKLLATGG-HD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV 329 (545)
Q Consensus 266 V~~l~~spdg~~latg~-~d----g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg-----------~I 329 (545)
+..+++||||++||.+- .. ..|+++|+++++.+...-.... ...+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 34578999999988762 22 3599999999987653211111 22399999988877665433 37
Q ss_pred EEEECCCCCee-eeEeccCccc--EEEEEEeCCCCcEEEEEcCC---CcEEEEECCCC-----ceeeEEeccCCeeEEEE
Q 009059 330 RVWDTENPDYS-LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNN---SEIRYWSINNG-----SCAGVFKCQSGATQMRF 398 (545)
Q Consensus 330 ~vwd~~~~~~~-~~~~~~h~~~--V~~l~~~p~~~~ll~s~s~d---g~I~lwd~~~~-----~~~~~~~~~~~v~~l~~ 398 (545)
..|.+.+.... ...+...... ...+..+++++.+++..... ..+++.++..+ ...........+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888776542 2344433332 56888899998887665433 45888898875 33333333333433332
Q ss_pred eCCCCEEEEEEC----CCeEEEEECCCCE---EEEEecCCCCCEEEEEEcCCCCEEEEEe--CC--cEEEEEcCCCCCcc
Q 009059 399 QPRLGRILAAAI----ENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGE 467 (545)
Q Consensus 399 sp~~~~l~~~~~----dg~I~i~d~~~~~---~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg--~I~vwd~~~~~~~~ 467 (545)
.. ++.++..+. .+.|...++.... ....+..+...+.-..+...+.+|+... ++ .|+++++..+ .
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~---~ 360 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG---K 360 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T---E
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC---c
Confidence 33 455554443 4578888888754 2334445655433333334455565554 55 8999999822 2
Q ss_pred eEEEEe-eCCCceEEEEEcCCCCEEEEEEcC----CeEEEEeCCCCeEEEe
Q 009059 468 CIHELS-CTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTL 513 (545)
Q Consensus 468 ~i~~~~-~~~~~v~~~~~sp~~~~l~~~~~d----g~I~iwd~~~~~~~~~ 513 (545)
....+. ...+.|..+...++...+...-.. .+++.||+.+++...+
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 233332 233445666655666544433322 3899999999877643
No 320
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.53 E-value=3.5e-07 Score=86.48 Aligned_cols=158 Identities=14% Similarity=0.214 Sum_probs=117.3
Q ss_pred EEEcCC--CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----Ceeee
Q 009059 269 CHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----DYSLR 342 (545)
Q Consensus 269 l~~spd--g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~----~~~~~ 342 (545)
|+|+-+ |-. ++.+.+-.|-|-|++++... .|. ....|.++.|.-.+.+++.|..+|.|.++|++.. ..+..
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 466542 323 44456778889998885433 333 5677999999988899999999999999999865 33344
Q ss_pred EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce---eeEEeccCC---eeEEEEeCCCCEEEEEECCCeEEE
Q 009059 343 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFKCQSG---ATQMRFQPRLGRILAAAIENYISI 416 (545)
Q Consensus 343 ~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~---~~~~~~~~~---v~~l~~sp~~~~l~~~~~dg~I~i 416 (545)
.+. |...|+++.........+++.+.+|.|++||++.-++ +..+..+.. ..-+.+.+..+.+++++.|-..+|
T Consensus 294 rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 294 RLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred EEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence 444 8899999988773345555778899999999997776 666653322 223455677889999999999999
Q ss_pred EECCCCEEEEEecC
Q 009059 417 LDVETQVCRLKLQG 430 (545)
Q Consensus 417 ~d~~~~~~~~~~~~ 430 (545)
|.++.+..+.++.-
T Consensus 373 Wsl~~ghLl~tipf 386 (425)
T KOG2695|consen 373 WSLDSGHLLCTIPF 386 (425)
T ss_pred EecccCceeeccCC
Confidence 99999988887764
No 321
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.51 E-value=9.9e-05 Score=78.13 Aligned_cols=258 Identities=10% Similarity=0.067 Sum_probs=150.5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCc------cEE--EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEecc
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WIT--DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 346 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~------~V~--~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~ 346 (545)
+..++.++.++.|+-.|..+++.+..+..... .+. .+.+. ++..++.++.++.|..+|.++++. +-.+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~-~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQ-VWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCE-eeeecC
Confidence 34566677789999999999998877643322 010 11111 226788888999999999999886 333332
Q ss_pred Cccc-----E-EEEEEeCCCCcEEEEEc---------CCCcEEEEECCCCceeeEEeccCC-------------------
Q 009059 347 HSTT-----V-MSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKCQSG------------------- 392 (545)
Q Consensus 347 h~~~-----V-~~l~~~p~~~~ll~s~s---------~dg~I~lwd~~~~~~~~~~~~~~~------------------- 392 (545)
.... + ....+.. .. ++.++ .++.|..+|..+++.+..+.....
T Consensus 139 ~~~~~~~~~i~ssP~v~~--~~-v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVK--KL-VIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCcCcceEecCCCEEEC--CE-EEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 2110 1 1122221 23 33443 367899999999998887764211
Q ss_pred --e-eEEEEeCCCCEEEEEECCC------------------eEEEEECCCCEEEEEecCCCCCEE------EEEEc----
Q 009059 393 --A-TQMRFQPRLGRILAAAIEN------------------YISILDVETQVCRLKLQGHKNQVH------SVCWN---- 441 (545)
Q Consensus 393 --v-~~l~~sp~~~~l~~~~~dg------------------~I~i~d~~~~~~~~~~~~h~~~I~------~l~~s---- 441 (545)
+ ....+.+.++.+++++.++ .|.-+|+++++.+..++.-..... ...+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 0 1345555667888887665 799999999999887653111110 00111
Q ss_pred CCCC---EEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEE------------------EcCCe
Q 009059 442 TSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI------------------GCYET 499 (545)
Q Consensus 442 p~g~---~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~------------------~~dg~ 499 (545)
-++. +++.++ +|.+..+|..+++ .+-..... ...+..+| ..++++ ..++.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~---~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGK---LISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCc---EeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 1333 566666 8999999999984 33332211 11123333 223332 23568
Q ss_pred EEEEeCCCCeEE-EeccC--C------CCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 500 LELWNMTENKTL-TLSAH--D------KLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 500 I~iwd~~~~~~~-~~~~h--~------~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|.-+|+.+++.+ ..... . .+...-.....+.+|+.++.||.|+.+|
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 889999999887 32211 1 1111111112457888888999887654
No 322
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=0.00029 Score=72.00 Aligned_cols=254 Identities=11% Similarity=0.121 Sum_probs=173.0
Q ss_pred EEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEE
Q 009059 287 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 365 (545)
Q Consensus 287 I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s-~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~ 365 (545)
+.+++..+......+..+. ....+...+++..++... ....+.+.+.. ..........-......+++++.+..+++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEE
Confidence 6666666655555554333 456678888885554443 22245555554 22111111111144567888898888887
Q ss_pred EEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC---CCeEEEEECCCCEEEEEecCCCCCEEEEEEcC
Q 009059 366 SCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI---ENYISILDVETQVCRLKLQGHKNQVHSVCWNT 442 (545)
Q Consensus 366 s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~---dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp 442 (545)
....+..|.+.|..+.+.............++++++++.++++.. ++.+.+.|..+.+.......-..+ ..++++|
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 887789999999988888888877778899999999988888776 689999999999888775543334 8999999
Q ss_pred CCCEEEEEe--CCcEEEEEcCCCCCcc-eEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCeEEEec-c
Q 009059 443 SGEYLASVS--DELVRVWSIGSGSKGE-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLS-A 515 (545)
Q Consensus 443 ~g~~l~s~s--dg~I~vwd~~~~~~~~-~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~~~~~~-~ 515 (545)
+|..++... ++.|.++|........ ..............+.+.+++.++++..... .+...|..++...... .
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 999777776 7899999976542110 0000112234456789999999777776654 8999999998887432 1
Q ss_pred CCC-CeeEEEEeCCCCEEEEEeCC-CcEEE
Q 009059 516 HDK-LVSSLAASTVNGMVASASHD-KCVKI 543 (545)
Q Consensus 516 h~~-~V~~l~~spd~~~las~s~D-g~I~i 543 (545)
-.. ....+.++|+|+++.+.... +.+.+
T Consensus 250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 250 VGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred cccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 112 56778899999988777433 44443
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=2.8e-05 Score=82.10 Aligned_cols=204 Identities=15% Similarity=0.247 Sum_probs=137.7
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC-----cEEEEECCCC-----
Q 009059 312 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNG----- 381 (545)
Q Consensus 312 ~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg-----~I~lwd~~~~----- 381 (545)
+|++.+..++.|+.+|.|.+.+-. -..++.+..+...+...-+.-++..++++.+.|+ .|++|+++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 467788899999999987777643 3334667777766444444555555666655554 5999998642
Q ss_pred -cee---eEEe-----ccCCeeEEEEeCCCCEEEEEECCCeEEEEECC----CCEEEEEecCCCCCEEEEEEcCCCCE-E
Q 009059 382 -SCA---GVFK-----CQSGATQMRFQPRLGRILAAAIENYISILDVE----TQVCRLKLQGHKNQVHSVCWNTSGEY-L 447 (545)
Q Consensus 382 -~~~---~~~~-----~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~----~~~~~~~~~~h~~~I~~l~~sp~g~~-l 447 (545)
.++ +.+. ...++.+++++.+-..+++|-.+|.|..+.-. .+....-......+|+.+++..++.. +
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 334 2222 13457889999998889999999999998532 12212222234679999999998877 5
Q ss_pred EEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Eec-cCCCCe
Q 009059 448 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHDKLV 520 (545)
Q Consensus 448 ~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~-~h~~~V 520 (545)
.++....|.+|.+... . .....+..++....|..+++....+++++. ..|++||....+.- .+. +|....
T Consensus 188 Fv~Tt~~V~~y~l~gr-~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGR-T-PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred EEEecceeEEEEecCC-C-cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEE
Confidence 5555778999999843 2 345567788888999999887764555544 46999998765544 665 665543
No 324
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.49 E-value=6.7e-06 Score=87.03 Aligned_cols=174 Identities=14% Similarity=0.200 Sum_probs=128.5
Q ss_pred EEEEcCCCcEEEEECCCCceeeEEeccC-CeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcC
Q 009059 364 LCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 442 (545)
Q Consensus 364 l~s~s~dg~I~lwd~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp 442 (545)
++.|+.-..+..+|+++.+..+...... ++.-++. ++..+++|...|+|.+-|.++.+.++++..|.+.|..+..
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv-- 225 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV-- 225 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--
Confidence 3366667778889999888877766544 3444443 4477888889999999999999999999999999977664
Q ss_pred CCCEEEEEe----------CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC-CEEEEEEcCCeEEEEeC---CCC
Q 009059 443 SGEYLASVS----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNM---TEN 508 (545)
Q Consensus 443 ~g~~l~s~s----------dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~I~iwd~---~~~ 508 (545)
.|+.|++++ |.-|+|||++.-.....+. .+.+ ..-+.|+|.. ..+++++..|...+-|. .+.
T Consensus 226 ~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~---~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 226 QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ---FPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc---cccC-chhhhhcccccceEEEEecccceeeccccccCCC
Confidence 677887765 3368999998764333322 2222 2456788865 45888899999999983 333
Q ss_pred eEE--EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 509 KTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 509 ~~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
..- .+......+.++++++++..||.|..+|.|.+|-
T Consensus 302 ~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 302 PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 221 3334455699999999999999999999999993
No 325
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.48 E-value=6.4e-07 Score=81.65 Aligned_cols=109 Identities=16% Similarity=0.361 Sum_probs=80.2
Q ss_pred cCCCCEEEEEeC-----CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeeeEec
Q 009059 272 SPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 272 spdg~~latg~~-----dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~-~~~l~t~s~dg~I~vwd~~~~~~~~~~~~ 345 (545)
...+++|.+++- -+..+.|++...+....-......|.+++-+|. ...+++|+.||.+-+||+++...+...+.
T Consensus 141 ~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ 220 (319)
T KOG4714|consen 141 CRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK 220 (319)
T ss_pred eecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHH
Confidence 334555554431 234556666543333222223344999999995 45777888999999999999888888899
Q ss_pred cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 346 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 346 ~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
.|+.+++.+-|+|....-|+++++||.+..||..+
T Consensus 221 ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 221 AHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred HhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99999999999998777677999999999999874
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=8.7e-05 Score=78.55 Aligned_cols=195 Identities=13% Similarity=0.156 Sum_probs=135.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCcc-EEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCC
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSSADR-----TVRVWDTENPD 338 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~-V~~l~~sp~~~~l~t~s~dg-----~I~vwd~~~~~ 338 (545)
.|.| |++.+..+|.|+.+|.|.+.+ ...+.+..++.+... |..+....+..+|++.+.|+ .++||+++.-.
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4544 467788999999999998888 445666788877777 44444443446888877765 58999987431
Q ss_pred -----eee---eEec----cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC--C---CceeeEEeccCCeeEEEEeCC
Q 009059 339 -----YSL---RTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--N---GSCAGVFKCQSGATQMRFQPR 401 (545)
Q Consensus 339 -----~~~---~~~~----~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~--~---~~~~~~~~~~~~v~~l~~sp~ 401 (545)
.++ +.+. ....++.+++.+.+ -..++.|-.+|.|..+.=+ . .+.........+|+.+.+..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 112 2221 13457888898887 4567788899999988421 1 122223345567999999998
Q ss_pred CCEEEEEECCCeEEEEECCCCEE-EEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCC
Q 009059 402 LGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 463 (545)
Q Consensus 402 ~~~l~~~~~dg~I~i~d~~~~~~-~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~ 463 (545)
+..++.+..-..|.+|.+....+ ...+..|...+.|..+++...-++++.+..+.+|+....
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGR 245 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCc
Confidence 88756666667888898885443 444777888999999987666577777778999997643
No 327
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.45 E-value=0.0011 Score=65.73 Aligned_cols=268 Identities=14% Similarity=0.099 Sum_probs=136.0
Q ss_pred EEcCCCCEEEEEeC-C--CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEecc
Q 009059 270 HFSPDGKLLATGGH-D--KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 346 (545)
Q Consensus 270 ~~spdg~~latg~~-d--g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~ 346 (545)
+|.+||+.|+.++. | ..+.+.|+.+++..+--.+.........++++.+.++.......|+-.|+.+.+. ...+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEEC
Confidence 67889976666554 4 4567778888877655443323233466778888887776677899999998765 344444
Q ss_pred CcccEEEEEEe--CCCCcEEEEEc---C-------------------CCcEEEEECCCCceeeEEeccCCeeEEEEeCCC
Q 009059 347 HSTTVMSLDFH--PSKEDLLCSCD---N-------------------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL 402 (545)
Q Consensus 347 h~~~V~~l~~~--p~~~~ll~s~s---~-------------------dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~ 402 (545)
....+-...|. .++ ..++..- . ...|...|+.+|+....+....-+..+.|+|..
T Consensus 121 p~~~~g~gt~v~n~d~-t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDC-TKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTS-SEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred CcccccccceeeCCCc-cEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence 45555445554 333 3332221 1 134666788888887777766778899999977
Q ss_pred CEEEEEECCC-----eEEEEECCC-CEEEEEecCCCC--CEEEEEEcCCCCEEEEEe---CC---cEEEEEcCCCCCcce
Q 009059 403 GRILAAAIEN-----YISILDVET-QVCRLKLQGHKN--QVHSVCWNTSGEYLASVS---DE---LVRVWSIGSGSKGEC 468 (545)
Q Consensus 403 ~~l~~~~~dg-----~I~i~d~~~-~~~~~~~~~h~~--~I~~l~~sp~g~~l~s~s---dg---~I~vwd~~~~~~~~~ 468 (545)
..+++-+.+| .-+||-+++ +.....+..+.. .+..=-|.|||..|..-+ .+ .|.-+|+.++.. ..
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~~ 278 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-RR 278 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-EE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-eE
Confidence 7777766544 124554432 333333333332 344456899998766533 22 567777777643 22
Q ss_pred EEEEeeCCCceEEEEEcCCCCEEEEEEcCC----------------eEEEEeCCCCeEEEeccCCC-----------Cee
Q 009059 469 IHELSCTGNKFHSCVFHPTFPSLLVIGCYE----------------TLELWNMTENKTLTLSAHDK-----------LVS 521 (545)
Q Consensus 469 i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg----------------~I~iwd~~~~~~~~~~~h~~-----------~V~ 521 (545)
+... ....-+..++++.+++-=+.|. -|+++++..+....+..|.. .=-
T Consensus 279 ~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hP 354 (386)
T PF14583_consen 279 LMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHP 354 (386)
T ss_dssp EEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT--
T ss_pred EEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCC
Confidence 2221 2344556678888544333331 56778888877654443421 124
Q ss_pred EEEEeCCCCEEEEE-eCCCcEEEc
Q 009059 522 SLAASTVNGMVASA-SHDKCVKIW 544 (545)
Q Consensus 522 ~l~~spd~~~las~-s~Dg~I~iW 544 (545)
...|+||+++|+-. ...|...||
T Consensus 355 hp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 355 HPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp --EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCccCCCCCEEEEECCCCCCccEE
Confidence 57899999977654 456665554
No 328
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.44 E-value=0.00016 Score=66.38 Aligned_cols=258 Identities=11% Similarity=0.069 Sum_probs=136.2
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEE
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 353 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~ 353 (545)
-|++++.|.+.|.+++.+..+|.....+..-..-=......+++..+..++.|++....|..+... +...+...+...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c-VykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC-VYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccce-EEecccCCceecc
Confidence 367899999999999999999988766643322112234566889999999999999999997664 5444433333334
Q ss_pred EEEeCCCCcEEEEEcCCCcEEEEECCCC--ceeeEEeccCCeeE--EEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec
Q 009059 354 LDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKCQSGATQ--MRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 429 (545)
Q Consensus 354 l~~~p~~~~ll~s~s~dg~I~lwd~~~~--~~~~~~~~~~~v~~--l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~ 429 (545)
-+..|....++ .+...|.|.--+.+.. ..+..+....++.. ++. +..+..++-||.+.-|| +.++.+..+.
T Consensus 141 P~i~~g~~sly-~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 141 PVIAPGDGSLY-AAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred ceecCCCceEE-EEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 44555333344 3344555555555544 22222222233221 222 23466666778777777 5566555443
Q ss_pred CCCCCEEE-EEEc-CCCCEEEEEeCC---------cEEEEEcCCCCCcceEEEEeeCCCceEEEEEc-C---CCCEEEEE
Q 009059 430 GHKNQVHS-VCWN-TSGEYLASVSDE---------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFH-P---TFPSLLVI 494 (545)
Q Consensus 430 ~h~~~I~~-l~~s-p~g~~l~s~sdg---------~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~s-p---~~~~l~~~ 494 (545)
..++|.. -+.+ |..+.|..+.++ .-.+|...++ ...+.+. .+-....++ + ..++|..+
T Consensus 216 -t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g---~t~~vy~---~p~l~F~~h~~~~S~~~ll~~~ 288 (354)
T KOG4649|consen 216 -TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSG---TTLHVYL---SPKLRFDLHSPGISYPKLLRRS 288 (354)
T ss_pred -CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCC---cEEEEEe---CcccceeccCCCCcchhhhhhh
Confidence 2333321 1112 333334333333 2334554443 1111111 000011221 1 13457778
Q ss_pred EcCCeEEEEeCCCCeEEEeccCCCC---eeEEEE------eC--CCCEEEEEeCCCcEEEcC
Q 009059 495 GCYETLELWNMTENKTLTLSAHDKL---VSSLAA------ST--VNGMVASASHDKCVKIWK 545 (545)
Q Consensus 495 ~~dg~I~iwd~~~~~~~~~~~h~~~---V~~l~~------sp--d~~~las~s~Dg~I~iWd 545 (545)
+.||.+.|.-.+.. ......|.+. +.++.+ +| -+..|+.|+.|..|+-||
T Consensus 289 s~dgkv~il~~~~s-l~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cld 349 (354)
T KOG4649|consen 289 SGDGKVMILMTSKS-LAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLD 349 (354)
T ss_pred cCCCcEEEEEeccc-ccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEe
Confidence 88998888743222 1122233322 222222 12 124577888999999886
No 329
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.42 E-value=0.00061 Score=69.90 Aligned_cols=90 Identities=10% Similarity=0.081 Sum_probs=70.9
Q ss_pred cEEEEEcCCCCCcceEEE-EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEE
Q 009059 454 LVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV 532 (545)
Q Consensus 454 ~I~vwd~~~~~~~~~i~~-~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~l 532 (545)
.-.+|++...+. .++.. --.....+.+++++|+...++.|+.||.|.+||...+.... ..+.-.++.++|+|+|.++
T Consensus 237 d~ciYE~~r~kl-qrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 237 DSCIYECSRNKL-QRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEEeecCce-eEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee-eeecccceEEEEcCCCcEE
Confidence 345677765432 33322 22467789999999999999999999999999997774442 2455668899999999999
Q ss_pred EEEeCCCcEEEcC
Q 009059 533 ASASHDKCVKIWK 545 (545)
Q Consensus 533 as~s~Dg~I~iWd 545 (545)
++|+..|.+.+||
T Consensus 315 ~V~s~qGelQ~FD 327 (545)
T PF11768_consen 315 VVGSEQGELQCFD 327 (545)
T ss_pred EEEcCCceEEEEE
Confidence 9999999999997
No 330
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.42 E-value=6.6e-05 Score=76.35 Aligned_cols=261 Identities=13% Similarity=0.080 Sum_probs=140.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC--------
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-------- 336 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~-------- 336 (545)
.|+++.|+++..-|++|...|.|.||.....+... ......-....|.+- ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 48899999998899999999999999875432221 000011111222110 00111112222221
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC---------CeeEEEEeC-----CC
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS---------GATQMRFQP-----RL 402 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~---------~v~~l~~sp-----~~ 402 (545)
+-.+...+....++|++++.+.-| +++.|+.+|.+.|.|++....+..-.... .++++.|.. ++
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 222344555668999999998654 88899999999999999888776643322 367777762 21
Q ss_pred ---CEEEEEECCCeEEEEECC--C-CE----EEEEecCCCCCEEEEE-EcCC---------------------CCEEEEE
Q 009059 403 ---GRILAAAIENYISILDVE--T-QV----CRLKLQGHKNQVHSVC-WNTS---------------------GEYLASV 450 (545)
Q Consensus 403 ---~~l~~~~~dg~I~i~d~~--~-~~----~~~~~~~h~~~I~~l~-~sp~---------------------g~~l~s~ 450 (545)
-.+++|+..|.+.+|.+. . +. .......+.+.|..|. ++.+ ..+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 358889999999999764 1 21 1122224666766665 3221 1267777
Q ss_pred eCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEE-----cCCCCEEEEEEcCCeEEEEeCCCCeEE-Eecc----CCCCe
Q 009059 451 SDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF-----HPTFPSLLVIGCYETLELWNMTENKTL-TLSA----HDKLV 520 (545)
Q Consensus 451 sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~-----sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~----h~~~V 520 (545)
++..++|+...+. +..+...........+.+ ...+..|++-..+|.|++|.+...+.+ ...- +...+
T Consensus 233 Se~~irv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 233 SESDIRVFKPPKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp -SSEEEEE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred cccceEEEeCCCC---cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 7999999998775 334433322223334444 235667888999999999999998877 3222 22345
Q ss_pred eEEEEeCCCCEEEEEeCC
Q 009059 521 SSLAASTVNGMVASASHD 538 (545)
Q Consensus 521 ~~l~~spd~~~las~s~D 538 (545)
....++++|..++-.+..
T Consensus 310 ~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp TT-EE-TTS-EEEE-SSS
T ss_pred cccEECCCCCEEEEeCcc
Confidence 566778888877666543
No 331
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.41 E-value=4.7e-05 Score=78.16 Aligned_cols=197 Identities=15% Similarity=0.133 Sum_probs=126.8
Q ss_pred CeEEEEeccCCccEEEEEEcCCCCEEEEEeC---C-CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC
Q 009059 295 FTVKSTLEEHTQWITDVRFSPSLSRLATSSA---D-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 370 (545)
Q Consensus 295 ~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~---d-g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d 370 (545)
+.....+..-...+..-+|+|++..++..+. . ..+.++++.++... .... ..+.-...+|+|+|..++++...|
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-~i~~-~~g~~~~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-VILN-FNGNNGAPAFSPDGSKLAFSSSRD 259 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-eeec-cCCccCCccCCCCCCEEEEEECCC
Confidence 3444445445566777899999887665432 2 46899999887642 2222 344456678999999999998888
Q ss_pred Cc--EEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC-C--eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCC
Q 009059 371 SE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 445 (545)
Q Consensus 371 g~--I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d-g--~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~ 445 (545)
|. |+++|+..+...+.....+.-..-.|+|+|.+++..+.. | .|.+++.+.+.... +......-..-.|+|||+
T Consensus 260 g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~~~~p~~SpdG~ 338 (425)
T COG0823 260 GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGGNSNPVWSPDGD 338 (425)
T ss_pred CCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCCCcCccCCCCCC
Confidence 85 666688777644422233334567899999999888763 3 57888888765533 222222223788999999
Q ss_pred EEEEEe--CCc--EEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC
Q 009059 446 YLASVS--DEL--VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 498 (545)
Q Consensus 446 ~l~s~s--dg~--I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 498 (545)
+|+..+ +|. |.+.|+.++.. +..+. .......-.|.+++..++..+..+
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~---~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGK---IRILT-STYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCc---EEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence 999887 554 67777766532 22221 233344557788887766655544
No 332
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=2.9e-05 Score=81.48 Aligned_cols=181 Identities=13% Similarity=0.208 Sum_probs=130.2
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee
Q 009059 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 384 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~ 384 (545)
.+.++|++++ ++.|+.|+.+|.|++++.... ..+...|... ..+|+ .+++|+.||.|.+..+-+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~---~~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN---PKTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc---cccccccccc------ccCCc-eEEEecCCCcEEEeeccCCccc
Confidence 3456777775 568999999999999998742 1333445443 44454 5669999999999999999988
Q ss_pred eEEeccCCeeEEEEeCC-----CCEEEEEECCCeEEEEECCC---CEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEE
Q 009059 385 GVFKCQSGATQMRFQPR-----LGRILAAAIENYISILDVET---QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVR 456 (545)
Q Consensus 385 ~~~~~~~~v~~l~~sp~-----~~~l~~~~~dg~I~i~d~~~---~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~ 456 (545)
..+....++..++++|+ .+.+++|+..| +.++.-+- ...+ .+....++|.+++| .|.++|-++|--|+
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W--~g~lIAWand~Gv~ 182 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW--RGNLIAWANDDGVK 182 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEe--cCcEEEEecCCCcE
Confidence 88888899999999997 56788888888 77776431 1222 35556789999999 48899999988899
Q ss_pred EEEcCCCCCcceEEEEeeCCCc------eEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 457 VWSIGSGSKGECIHELSCTGNK------FHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 457 vwd~~~~~~~~~i~~~~~~~~~------v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
|||+.+. ..+..+...... ...+.|.++.+ ++.|...+|+|..++
T Consensus 183 vyd~~~~---~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPTR---QRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIGWGDSVKICSIK 233 (846)
T ss_pred EEecccc---ceeeccCCCCCCCCcccCCCceEecCCCe--EEEecCCeEEEEEEe
Confidence 9999876 333333322222 23456766654 455556678888776
No 333
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.38 E-value=7.2e-05 Score=77.61 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=98.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEE-eccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~-l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
.|.--+++..+++|+.|+.-|.+++|+-..++.... ..+..+.+..+..+++..++|.|+..|.|.|+-+......-..
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 344455666789999999999999999766555432 2334555666778888888999999999999988753321111
Q ss_pred -----eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC-----ceeeEEeccCCeeEEEEeCCCCEEEEEEC
Q 009059 344 -----FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAI 410 (545)
Q Consensus 344 -----~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~-----~~~~~~~~~~~v~~l~~sp~~~~l~~~~~ 410 (545)
-..|...|++++|++++..++ +|+..|.|.+-.+... .....+.....|..+.+.. .++++++.
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl 188 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTL 188 (726)
T ss_pred eeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhh
Confidence 123778999999999986665 9999999998888762 1122333445566665543 45555444
No 334
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.37 E-value=9.1e-05 Score=81.21 Aligned_cols=231 Identities=14% Similarity=0.183 Sum_probs=135.9
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce
Q 009059 304 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 304 h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~ 383 (545)
..+.|.++.|..+..-++.+..+|.|.+-|.++... .....-...|.+++|+||+..++ ....++++.+- ..+..+
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~--eivg~vd~GI~aaswS~Dee~l~-liT~~~tll~m-T~~f~~ 142 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL--EIVGNVDNGISAASWSPDEELLA-LITGRQTLLFM-TKDFEP 142 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccce--eeeeeccCceEEEeecCCCcEEE-EEeCCcEEEEE-eccccc
Confidence 346899999999999999999999999998887543 33334467899999999976554 45445555543 232333
Q ss_pred eeEEec------cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-----C
Q 009059 384 AGVFKC------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-----D 452 (545)
Q Consensus 384 ~~~~~~------~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-----d 452 (545)
+..... .+....+-|-.....+ -+..|.....+............-.+.=++|+|--||.|+++.. +
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqf--rgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQF--RGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred hhccccccccccccccceecccccceee--ecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 322211 0111222222211110 01111111111111110000001122335799999999999843 4
Q ss_pred -CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc---CCeEEEEeCCCCeEE----EeccCCCCeeEEE
Q 009059 453 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMTENKTL----TLSAHDKLVSSLA 524 (545)
Q Consensus 453 -g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~---dg~I~iwd~~~~~~~----~~~~h~~~V~~l~ 524 (545)
..|+|||-. + ..-..-....+.-.+++|-|.|..+++... ++.|.+|.-++.+.- .+......|..++
T Consensus 221 ~RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~ 296 (1265)
T KOG1920|consen 221 TRKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELA 296 (1265)
T ss_pred ceeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheee
Confidence 689999976 3 111111223344578899999998888754 447999987654322 2333344599999
Q ss_pred EeCCCCEEEE---EeCCCcEEEc
Q 009059 525 ASTVNGMVAS---ASHDKCVKIW 544 (545)
Q Consensus 525 ~spd~~~las---~s~Dg~I~iW 544 (545)
|+.++.+||+ ......|++|
T Consensus 297 Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 297 WNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred ecCCCCceeeeecccccceEEEE
Confidence 9999999987 4445559998
No 335
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.35 E-value=0.00066 Score=66.14 Aligned_cols=256 Identities=9% Similarity=0.098 Sum_probs=153.0
Q ss_pred CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCCeeeeEeccC--c----
Q 009059 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH--S---- 348 (545)
Q Consensus 285 g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~----------dg~I~vwd~~~~~~~~~~~~~h--~---- 348 (545)
+.++|+|.++++.+-.+.. +..-.+..+|+++.+++++. .-.|.+||..+-.......... .
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999998876653 22334678999998887542 3469999998764322211111 1
Q ss_pred ccEEEEEEeCCCCcEEEEE-cCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECC-CCEEEE
Q 009059 349 TTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRL 426 (545)
Q Consensus 349 ~~V~~l~~~p~~~~ll~s~-s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~-~~~~~~ 426 (545)
.....+.++.+++.+++.- +---.|.|.|+..++.+.++..++...-.-. .+ ..+.+.|.||.+..+.+. .|+...
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~-~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPS-GN-RGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEE-ET-TEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEec-CC-CceEEEecCCceEEEEECCCCCEeE
Confidence 1223346667766655332 2334688888888888888776543322222 22 568899999999988887 444432
Q ss_pred E----ecCCCCCEE-EEEEcCCC-CEEEEEeCCcEEEEEcCCCCCcceEEEEeeC----------CCceEEEEEcCCCCE
Q 009059 427 K----LQGHKNQVH-SVCWNTSG-EYLASVSDELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPS 490 (545)
Q Consensus 427 ~----~~~h~~~I~-~l~~sp~g-~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~----------~~~v~~~~~sp~~~~ 490 (545)
+ |.....++. .-.+...+ .++....+|.|+-.|+..... .....+... .+...-+++++....
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~-~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA-KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE-EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc-cccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 2 222222222 33444444 455555599999999876532 222232211 122344677776666
Q ss_pred EEEEEc--------CC--eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCC-EEEEE-eCCCcEEEcC
Q 009059 491 LLVIGC--------YE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASA-SHDKCVKIWK 545 (545)
Q Consensus 491 l~~~~~--------dg--~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~-~las~-s~Dg~I~iWd 545 (545)
|++.-. ++ .|.+||+.+++.+....-...+.+|.++.+.+ +|++. ..++.|.|||
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 665432 11 68889999999984444445688999998887 66554 4578999986
No 336
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.35 E-value=0.00042 Score=73.39 Aligned_cols=228 Identities=14% Similarity=0.098 Sum_probs=130.9
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEeccCCcc--EEEEEEcC--CCCEEEEEe---------CCCeEEEEECCCCCeeee
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--ITDVRFSP--SLSRLATSS---------ADRTVRVWDTENPDYSLR 342 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~--V~~l~~sp--~~~~l~t~s---------~dg~I~vwd~~~~~~~~~ 342 (545)
..++.++.++.|+-+|.++|+.+..+...... -..+.-+| .+..++.++ .+|.|..+|..+++...+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 57777888999999999999999777543221 01111112 124455553 367899999998876333
Q ss_pred EeccCc-------------------ccEE-EEEEeCCCCcEEEEEcCCC------------------cEEEEECCCCcee
Q 009059 343 TFTGHS-------------------TTVM-SLDFHPSKEDLLCSCDNNS------------------EIRYWSINNGSCA 384 (545)
Q Consensus 343 ~~~~h~-------------------~~V~-~l~~~p~~~~ll~s~s~dg------------------~I~lwd~~~~~~~ 384 (545)
.-.... ..+. ...+.+.+. +++.+..++ .|.-+|+.+++.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 222111 0111 233344433 344555444 7999999999999
Q ss_pred eEEeccCC-e------eEEEEe----CCCC---EEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEE
Q 009059 385 GVFKCQSG-A------TQMRFQ----PRLG---RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 450 (545)
Q Consensus 385 ~~~~~~~~-v------~~l~~s----p~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~ 450 (545)
..+..... . ....+. -++. .+++++.+|.++.+|.++++.+...... ...+..+| +.+++..
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~ 345 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGA 345 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEcc
Confidence 88753211 1 111111 1222 4677788999999999999988765421 11123333 2222211
Q ss_pred ------------------eCCcEEEEEcCCCCCcceEEEEeeCC--------CceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 451 ------------------SDELVRVWSIGSGSKGECIHELSCTG--------NKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 451 ------------------sdg~I~vwd~~~~~~~~~i~~~~~~~--------~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
.++.|.-+|+.+++ .+-...... .....-...-.+..|++++.+|.|+.+|
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~---~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK---VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCCc---EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 14567777877773 332222110 1111111112456788999999999999
Q ss_pred CCCCeEE
Q 009059 505 MTENKTL 511 (545)
Q Consensus 505 ~~~~~~~ 511 (545)
.++++.+
T Consensus 423 ~~tG~~l 429 (488)
T cd00216 423 ATTGKEL 429 (488)
T ss_pred CCCCcee
Confidence 9999988
No 337
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.33 E-value=3.6e-05 Score=79.04 Aligned_cols=189 Identities=12% Similarity=0.197 Sum_probs=125.6
Q ss_pred eeEeccCcccEEEEEEeCCCCcEEEEEcCC---CcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-CC--eE
Q 009059 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YI 414 (545)
Q Consensus 341 ~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d---g~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg--~I 414 (545)
...+..-...+..-+|+|++..+.+..-.. ..++++|+.+++...............|+|+|.+++.+.. || .|
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 444454556788889999988876654333 3599999999988887777777788899999998887765 55 68
Q ss_pred EEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CC--cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE
Q 009059 415 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 415 ~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~ 490 (545)
+++|+..+.... +....+.-..-.|+|||++|+..+ .| .|.+++...... ..+......-..-.|+|+|++
T Consensus 265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~SpdG~~ 339 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPDGDK 339 (425)
T ss_pred EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCCCCE
Confidence 888888876433 443333334668999999999888 34 567777665532 222222233337789999999
Q ss_pred EEEEEcC-C--eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEE
Q 009059 491 LLVIGCY-E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 534 (545)
Q Consensus 491 l~~~~~d-g--~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las 534 (545)
|+..+.. | .|.+.|+.++.......+......-.|.++++.++.
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred EEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEE
Confidence 9888854 3 477788766653333333333344455666554443
No 338
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.29 E-value=8.8e-05 Score=77.70 Aligned_cols=215 Identities=11% Similarity=0.057 Sum_probs=134.5
Q ss_pred EcCCCCEEEE-EeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCC----eEEEEECCCCCeeeeEec
Q 009059 271 FSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR----TVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 271 ~spdg~~lat-g~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg----~I~vwd~~~~~~~~~~~~ 345 (545)
++|||+.+.. .-..+.+.+.|.++.+....+.-.. ....+.++++++++++.+.+. ++..-+..+... +..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~-~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW-VVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCce-EEEEc
Confidence 4556655432 2234667778888877776665332 446688999999998886432 333333322111 11111
Q ss_pred cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-----CceeeEEeccCCeeEEEEeCCCCEEEEEEC-CCeEEEEEC
Q 009059 346 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDV 419 (545)
Q Consensus 346 ~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~-----~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~ 419 (545)
-. .+ .++.++|+..++ .++.|.+.|..+ .+.+..+........+.++|+|.++++++. ++.|.|+|+
T Consensus 278 i~--~i--ea~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 278 IA--RI--EEAVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred hH--HH--HHhhhCCCEEEE---CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence 00 00 023456665553 267899999998 567778888888999999999999888776 899999999
Q ss_pred CCCEE------------EEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCC------CCC-cceEEEEeeCCCce
Q 009059 420 ETQVC------------RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS------GSK-GECIHELSCTGNKF 479 (545)
Q Consensus 420 ~~~~~------------~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~------~~~-~~~i~~~~~~~~~v 479 (545)
.+.+. +...+- .......+|.++|....+-. |..|..|++.. +.. ...+..+..|..+-
T Consensus 351 ~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pg 429 (635)
T PRK02888 351 RKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPG 429 (635)
T ss_pred hhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccc
Confidence 87542 333332 22345678899998777777 99999999876 111 23444444444333
Q ss_pred EEEE-----EcCCCCEEEEEE
Q 009059 480 HSCV-----FHPTFPSLLVIG 495 (545)
Q Consensus 480 ~~~~-----~sp~~~~l~~~~ 495 (545)
...+ -.++|++|++..
T Consensus 430 h~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 430 HNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eeeecCCCcCCCCCCEEEEcc
Confidence 3222 356777776654
No 339
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=2.4e-05 Score=82.14 Aligned_cols=109 Identities=15% Similarity=0.232 Sum_probs=84.3
Q ss_pred EEEEcCCCCEEEEEe----CCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 268 SCHFSPDGKLLATGG----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 268 ~l~~spdg~~latg~----~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
-..|+|...++|+++ ..|.|.||- ++|++..... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+. ...
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-htv 96 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HTV 96 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCcee-eee
Confidence 357899888888876 357888885 5566543322 122356799999988899999999999999887654 455
Q ss_pred eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 344 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 344 ~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
...|..+|..+.|+++|..++ ++..-|.|.+|....
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~-t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLM-TLDNPGSVHLWRYDV 132 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEE-EcCCCceeEEEEeee
Confidence 567999999999999987655 999999999998763
No 340
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.26 E-value=0.00086 Score=67.99 Aligned_cols=248 Identities=17% Similarity=0.176 Sum_probs=141.7
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe-ccC--------------
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEH-------------- 304 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l-~~h-------------- 304 (545)
...-++|..++.. ..+......+....|||+|+.+|... ++.|.+++..+++..+.- .+-
T Consensus 23 ~~y~i~d~~~~~~----~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeE 97 (353)
T PF00930_consen 23 GDYYIYDIETGEI----TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEE 97 (353)
T ss_dssp EEEEEEETTTTEE----EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHH
T ss_pred eeEEEEecCCCce----EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccc
Confidence 3455667766542 22222256788999999999999885 689999998877554322 110
Q ss_pred --CccEEEEEEcCCCCEEEEEeCCC------------------------------------eEEEEECCCCCee-eeEe-
Q 009059 305 --TQWITDVRFSPSLSRLATSSADR------------------------------------TVRVWDTENPDYS-LRTF- 344 (545)
Q Consensus 305 --~~~V~~l~~sp~~~~l~t~s~dg------------------------------------~I~vwd~~~~~~~-~~~~- 344 (545)
-+.-..+-|+||+++||....|. .+.|+|+.+++.. +...
T Consensus 98 Ev~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~ 177 (353)
T PF00930_consen 98 EVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPN 177 (353)
T ss_dssp HTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---H
T ss_pred cccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecc
Confidence 11235688999999998864431 1334455444321 1111
Q ss_pred --ccCcccEEEEEEeCCCCcEEE-EEcCCC---cEEEEECCCCceeeEEeccCC-----eeEEEEe-CCCCEEEEE-ECC
Q 009059 345 --TGHSTTVMSLDFHPSKEDLLC-SCDNNS---EIRYWSINNGSCAGVFKCQSG-----ATQMRFQ-PRLGRILAA-AIE 411 (545)
Q Consensus 345 --~~h~~~V~~l~~~p~~~~ll~-s~s~dg---~I~lwd~~~~~~~~~~~~~~~-----v~~l~~s-p~~~~l~~~-~~d 411 (545)
..-...+..+.|.+++..+++ ....+. .+.++|..++++......... .....|. +++..++.. ..+
T Consensus 178 ~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 178 SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 123456888999998763443 333332 466778877665544432221 2355555 666655544 456
Q ss_pred C--eEEEEECCCCEEEEEecCCCCCEEE-EEEcCCCCEEEEEe--CC----cEEEEEcCCCCCcceEEEEeeCCCceEEE
Q 009059 412 N--YISILDVETQVCRLKLQGHKNQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSC 482 (545)
Q Consensus 412 g--~I~i~d~~~~~~~~~~~~h~~~I~~-l~~sp~g~~l~s~s--dg----~I~vwd~~~~~~~~~i~~~~~~~~~v~~~ 482 (545)
| .|++++...+... .+....-.|.. +.|+++++.|...+ ++ .|..-++..+ ..+..+.+.......+
T Consensus 258 G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~~~~~~~ 333 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCEDGDHYSA 333 (353)
T ss_dssp SSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTSSTTEEE
T ss_pred CCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCCCCceEE
Confidence 6 6777788877644 45545566755 67888877655443 22 4555555511 3445555444444799
Q ss_pred EEcCCCCEEEEEEc
Q 009059 483 VFHPTFPSLLVIGC 496 (545)
Q Consensus 483 ~~sp~~~~l~~~~~ 496 (545)
.|+|++++++....
T Consensus 334 ~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 334 SFSPDGKYYVDTYS 347 (353)
T ss_dssp EE-TTSSEEEEEEE
T ss_pred EECCCCCEEEEEEc
Confidence 99999998876554
No 341
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.00058 Score=69.84 Aligned_cols=220 Identities=13% Similarity=0.108 Sum_probs=153.1
Q ss_pred eEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCeee
Q 009059 266 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSL 341 (545)
Q Consensus 266 V~~l~~spdg~~-latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~---dg~I~vwd~~~~~~~~ 341 (545)
-..++++++++. .++...++.|.+.|..+.+......--. ....++++++++.++.+.. ++++.+.|..+.+...
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 346788888874 4444456899999988777766554322 5678999999988877765 6889999988877644
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee-----EEeccCCeeEEEEeCCCCEEEEEECC---Ce
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAAAIE---NY 413 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~-----~~~~~~~v~~l~~sp~~~~l~~~~~d---g~ 413 (545)
. ...-..+ ..+++.|++..++++-..++.|.+.|........ ..........+.+.+++.++++.... +.
T Consensus 155 ~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 155 T-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred E-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 4 3322234 8999999998888777789999999987665553 23334456789999999977776654 59
Q ss_pred EEEEECCCCEEEEEecCCCC-CEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC
Q 009059 414 ISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 488 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~-~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~ 488 (545)
+.+.|..++........-.. ....+..+|+|.++.+.. .+.+.+.|..+......+.........+..+++.+..
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 99999999877665221122 566789999999998886 4689999987763222222222223335555555544
No 342
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.19 E-value=0.00078 Score=69.58 Aligned_cols=219 Identities=11% Similarity=0.138 Sum_probs=119.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEE-ECCCCCeee
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW-DTENPDYSL 341 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vw-d~~~~~~~~ 341 (545)
.-....+.++|+|+++++++ ||...||.....+.... +.-...+|.+. ..+|+-...++|.|+ ++++.. .
T Consensus 32 ~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~--~ 102 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEV--V 102 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-T--T
T ss_pred CcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCcccc--c
Confidence 33467899999999999965 78888988555444432 23445788884 457777778899996 443222 1
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 421 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~ 421 (545)
..+.. ...+..|-. |..|+ ..+ ++.|.+||+.+++.++.+.... +..+.|++++.+++..+. ..++|++...
T Consensus 103 k~i~~-~~~~~~If~---G~LL~-~~~-~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~-~~i~il~~~~ 174 (443)
T PF04053_consen 103 KSIKL-PFSVEKIFG---GNLLG-VKS-SDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTK-DSIYILKYNL 174 (443)
T ss_dssp ------SS-EEEEE----SSSEE-EEE-TTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred eEEcC-CcccceEEc---CcEEE-EEC-CCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeC-CeEEEEEecc
Confidence 22221 123444433 54444 444 4489999999999999998653 899999999887777764 4666665433
Q ss_pred C-----------EEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE
Q 009059 422 Q-----------VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 422 ~-----------~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~ 490 (545)
. .....+..-...|.+.+|..+ .++..+...|+. +..+ ....+..-..++.-+.+.+..+.
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lkY--l~~G----e~~~i~~ld~~~yllgy~~~~~~ 246 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLKY--LVNG----ETGIIAHLDKPLYLLGYLPKENR 246 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEEE--EETT----EEEEEEE-SS--EEEEEETTTTE
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEEE--EEcC----CcceEEEcCCceEEEEEEccCCE
Confidence 2 012222222568899999766 444444336766 3333 22333334567777788887777
Q ss_pred EEEEEcCCeEEEEeCC
Q 009059 491 LLVIGCYETLELWNMT 506 (545)
Q Consensus 491 l~~~~~dg~I~iwd~~ 506 (545)
++....++.|..+.+.
T Consensus 247 ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 247 LYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEE-TT--EEEEE--
T ss_pred EEEEECCCCEEEEEEC
Confidence 8888888888777664
No 343
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.17 E-value=2e-05 Score=82.74 Aligned_cols=262 Identities=14% Similarity=0.113 Sum_probs=148.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eeeEe
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTF 344 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~-~~~~~ 344 (545)
+++++|+|..-.||.|-.-|.+.+|...+.+.-.....|..+|..+.|+++|..|+++..-|.|.+|....... ....+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 56799999988899999999999999988777777788999999999999999999999999999998873221 11122
Q ss_pred ccCc--ccE--EEEEEeCCCCcE------EEEEcCCCcEE-EEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 345 TGHS--TTV--MSLDFHPSKEDL------LCSCDNNSEIR-YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 345 ~~h~--~~V--~~l~~~p~~~~l------l~s~s~dg~I~-lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
..|. ..+ +|....++++.+ .++|+ +..+- .++.+.....+.... .-.|+|..+++++.+|+
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgD-e~alD~~fnwk~~~a~rs~~k-------sgv~~g~~F~~~~~~Gt 213 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGD-ESALDEPFNWKESLAERSDEK-------SGVPKGTEFLFAGKSGT 213 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCc-hhhhcccccCccchhhccccc-------cCCCCCcEEEEEcCCce
Confidence 2222 223 333445553322 22333 33332 333332111111111 11367778888999999
Q ss_pred EEEEECCCCE-EEEEec--------CCCCCEEEEEEcCCCCEEEEEeCCc------EEEEEcCCCCC-cc--------eE
Q 009059 414 ISILDVETQV-CRLKLQ--------GHKNQVHSVCWNTSGEYLASVSDEL------VRVWSIGSGSK-GE--------CI 469 (545)
Q Consensus 414 I~i~d~~~~~-~~~~~~--------~h~~~I~~l~~sp~g~~l~s~sdg~------I~vwd~~~~~~-~~--------~i 469 (545)
|+..|-.... .+.... +....|.++.-.-...++..-..|+ +++= .+.+.. +. .+
T Consensus 214 Vyyvdq~g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~s-gk~GgrqGgiA~sEssGvL 292 (1416)
T KOG3617|consen 214 VYYVDQNGRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVS-GKLGGRQGGIACSESSGVL 292 (1416)
T ss_pred EEEEcCCCcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhc-cccCCccCccccccccccc
Confidence 9988854332 122111 1112222221111111111111110 0000 000000 00 00
Q ss_pred ---EEE-eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe--------EEEec---cCCCCeeEEEEeCCCCEEEE
Q 009059 470 ---HEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------TLTLS---AHDKLVSSLAASTVNGMVAS 534 (545)
Q Consensus 470 ---~~~-~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~--------~~~~~---~h~~~V~~l~~spd~~~las 534 (545)
..+ ...+..+.++++...+..|+.|...|.+.+|--.... ...+. ...+.|+.+.|.|-...++.
T Consensus 293 r~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~av 372 (1416)
T KOG3617|consen 293 RKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAV 372 (1416)
T ss_pred cCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhh
Confidence 000 0124668999999999999999999999999543221 11222 23467999999986555444
Q ss_pred Ee
Q 009059 535 AS 536 (545)
Q Consensus 535 ~s 536 (545)
-+
T Consensus 373 n~ 374 (1416)
T KOG3617|consen 373 NT 374 (1416)
T ss_pred hh
Confidence 33
No 344
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.15 E-value=0.00019 Score=73.48 Aligned_cols=115 Identities=10% Similarity=0.142 Sum_probs=83.4
Q ss_pred CcccEEEEEEeCCCCcEEEEE----cCCCc----EEEEECCCCce----eeEEeccCCeeEEEEeCCCCEEEEEECCCeE
Q 009059 347 HSTTVMSLDFHPSKEDLLCSC----DNNSE----IRYWSINNGSC----AGVFKCQSGATQMRFQPRLGRILAAAIENYI 414 (545)
Q Consensus 347 h~~~V~~l~~~p~~~~ll~s~----s~dg~----I~lwd~~~~~~----~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I 414 (545)
-+....++.|+-..++.+.+. +.+|. -.+|++...+. +..+.....+.+++++|+...++.|+.||.|
T Consensus 204 TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 204 TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSI 283 (545)
T ss_pred ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeE
Confidence 344456677776545544443 23343 34566654432 2345567889999999999999999999999
Q ss_pred EEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q 009059 415 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 463 (545)
Q Consensus 415 ~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~ 463 (545)
.+||...+..... ...-.++.++|+|+|.++++|+ .|.+.+||+.-.
T Consensus 284 iLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999987744332 2445678999999999999999 689999998654
No 345
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.12 E-value=0.00064 Score=62.58 Aligned_cols=149 Identities=11% Similarity=-0.021 Sum_probs=112.6
Q ss_pred EeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCE
Q 009059 356 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV 435 (545)
Q Consensus 356 ~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I 435 (545)
..++.+.+++.|+..+.+...|..+|...........+.+-+.- -+++++.|+..|.+++.+.+++.....+..-..--
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk 96 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK 96 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhc
Confidence 34555678888999999999999999988877766666655554 45789999999999999999998777766433322
Q ss_pred EEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 436 HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 436 ~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
......+++.++..++ |+..+..|.++. .++...+..+....+-++.|....|+++...|.+.--..+..
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~---~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTY---GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEeccccc---ceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 3345678999999999 999999999876 788888877777777777785555777777775555454444
No 346
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.12 E-value=0.0021 Score=60.85 Aligned_cols=199 Identities=12% Similarity=0.178 Sum_probs=113.7
Q ss_pred EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc--CCeeEEEEeCCCCEEEEEECCCeEEEEECC
Q 009059 343 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVE 420 (545)
Q Consensus 343 ~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~ 420 (545)
.+.+-...+..++|+|+.+.|+++....+.|..++.. |+.++.+... .....+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4555666799999999988999999999999999974 7888877654 457889998775444444348999999883
Q ss_pred CC------EEEEEec-----CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCC--CCCcceEEEE------eeCCCceE
Q 009059 421 TQ------VCRLKLQ-----GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS--GSKGECIHEL------SCTGNKFH 480 (545)
Q Consensus 421 ~~------~~~~~~~-----~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~--~~~~~~i~~~------~~~~~~v~ 480 (545)
.. .....+. .++..+-.++|++.++.|+++. ..-..+|.+.. ......+... ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 21 1111221 2445689999999877777777 55566676654 1111111111 11234578
Q ss_pred EEEEcCCCCEEEEEEc-CCeEEEEeCCCCeEE---Eecc--CC-----CCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 481 SCVFHPTFPSLLVIGC-YETLELWNMTENKTL---TLSA--HD-----KLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 481 ~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~~~---~~~~--h~-----~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
.+.++|....|++-+. ...|.++| .+++.+ .+.. |. ...-.|+|.++|++.++ ++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 8999998766655555 45888999 455554 3322 11 34778999999865444 466666554
No 347
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.12 E-value=7.9e-07 Score=90.57 Aligned_cols=198 Identities=18% Similarity=0.249 Sum_probs=134.6
Q ss_pred CccEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCee-eeEeccCcccEEEEEEeCCCCcEEEEEc----CCCcEEEEE
Q 009059 305 TQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWS 377 (545)
Q Consensus 305 ~~~V~~l~~sp~--~~~l~t~s~dg~I~vwd~~~~~~~-~~~~~~h~~~V~~l~~~p~~~~ll~s~s----~dg~I~lwd 377 (545)
...+.|+++.-+ ..+++.|..+|.|.+-.++..... .....++...+++++|++-....+|.|- .|..+.+||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 345677776553 347888999999999988765433 4556678899999999987666776652 466899999
Q ss_pred CCCC--ceeeEEe----ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCE-EEEEecCCCCCEEEEEEcC-CCCEEEE
Q 009059 378 INNG--SCAGVFK----CQSGATQMRFQPRLGRILAAAIENYISILDVETQV-CRLKLQGHKNQVHSVCWNT-SGEYLAS 449 (545)
Q Consensus 378 ~~~~--~~~~~~~----~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~-~~~~~~~h~~~I~~l~~sp-~g~~l~s 449 (545)
+.++ .+..... ...+...++|..+.+.+++|.....++++|++... ....+ .+..+..+..+| .+.|+++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceec
Confidence 9876 2222111 22456688898887788888888999999998432 12212 234567788888 7889998
Q ss_pred EeCCcEEEEE-cCCCCCcceEEEEeeCC----CceEEEEEcCCCCE-EEEEEcC-CeEEEEeCC
Q 009059 450 VSDELVRVWS-IGSGSKGECIHELSCTG----NKFHSCVFHPTFPS-LLVIGCY-ETLELWNMT 506 (545)
Q Consensus 450 ~sdg~I~vwd-~~~~~~~~~i~~~~~~~----~~v~~~~~sp~~~~-l~~~~~d-g~I~iwd~~ 506 (545)
..||.|.+|| .+..+ ..+..+.... ..+..++|.|...- +++...| ++|++||+.
T Consensus 214 ~~dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cccCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 8899999999 43322 1222222222 34889999996543 4444444 489999884
No 348
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.12 E-value=0.00068 Score=67.78 Aligned_cols=208 Identities=13% Similarity=0.112 Sum_probs=119.8
Q ss_pred eEEEEECCCCCeeeeEec-cCcccEEEEEE---eCC---CCcEEEEEcC----------CCcEEEEECCCC-------ce
Q 009059 328 TVRVWDTENPDYSLRTFT-GHSTTVMSLDF---HPS---KEDLLCSCDN----------NSEIRYWSINNG-------SC 383 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~-~h~~~V~~l~~---~p~---~~~ll~s~s~----------dg~I~lwd~~~~-------~~ 383 (545)
.|++.|..+... +..+. .....+++++. ..+ ...+++.|.. .|.|.++++... +.
T Consensus 3 ~i~l~d~~~~~~-~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTTFEV-LDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTTSSE-EEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCCCeE-EEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 578888776653 33322 12334554443 222 1455555531 288999999884 23
Q ss_pred eeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCE-EEEE-ecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEc
Q 009059 384 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV-CRLK-LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 460 (545)
Q Consensus 384 ~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~-~~~~-~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~ 460 (545)
+......+.|.+++-. +++ ++++.++.|++|++...+ .... .......+.++... +.++++|. ...+.++.+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 3344567788888877 355 455556999999998766 3322 22233366777654 55888888 666666655
Q ss_pred CCCCCcceEEEE--eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC-------C--eEE--EeccCCCCeeEE---E
Q 009059 461 GSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-------N--KTL--TLSAHDKLVSSL---A 524 (545)
Q Consensus 461 ~~~~~~~~i~~~--~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~-------~--~~~--~~~~h~~~V~~l---~ 524 (545)
.... ..+..+ ......+.++.|-+++..++++..+|.|.++.... + +.. ........|+++ .
T Consensus 157 ~~~~--~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~ 234 (321)
T PF03178_consen 157 DEEN--NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS 234 (321)
T ss_dssp ETTT--E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred EccC--CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence 4321 222222 23355688888886667899999999999987753 2 222 222345668777 5
Q ss_pred EeCC--CC------EEEEEeCCCcEEE
Q 009059 525 ASTV--NG------MVASASHDKCVKI 543 (545)
Q Consensus 525 ~spd--~~------~las~s~Dg~I~i 543 (545)
+.|. +. .++.++.+|.|.+
T Consensus 235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eeecCCCCcccccceEEEEecCCEEEE
Confidence 5552 22 4888889998863
No 349
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.11 E-value=0.0021 Score=64.20 Aligned_cols=213 Identities=13% Similarity=0.103 Sum_probs=123.8
Q ss_pred CcEEEEEcCCCeEEEEecc-CCccEEEE---EEcCC----CCEEEEEeC----------CCeEEEEECCCC-----Ceee
Q 009059 285 KKAVLWCTESFTVKSTLEE-HTQWITDV---RFSPS----LSRLATSSA----------DRTVRVWDTENP-----DYSL 341 (545)
Q Consensus 285 g~I~lwd~~~~~~~~~l~~-h~~~V~~l---~~sp~----~~~l~t~s~----------dg~I~vwd~~~~-----~~~~ 341 (545)
..|+|.|..+.+.+..+.- ....++++ .|..+ ..+|+.|+. .|.|.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3578888888777755532 12334443 44332 467777753 289999999873 2222
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc-eeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECC
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 420 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~-~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~ 420 (545)
..-....++|++++-. ++.++++. ++.|++|++...+ ..........+........+++++++.....+.++..+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence 2333457889999877 33455444 5789999998877 55554444443444444445799999988877776443
Q ss_pred C-CEEEEEe--cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC-------C-CcceEEEEeeCCCceEEE---EEc
Q 009059 421 T-QVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-------S-KGECIHELSCTGNKFHSC---VFH 485 (545)
Q Consensus 421 ~-~~~~~~~--~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~-------~-~~~~i~~~~~~~~~v~~~---~~s 485 (545)
. ...+..+ ......++++.+-++++.++++. +|.+.++..... . ....+..+. .+..|+++ .+.
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLI 236 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEee
Confidence 2 2222222 22355688999986667777777 899999887631 1 112223332 34556666 444
Q ss_pred C--CCC------EEEEEEcCCeEEE
Q 009059 486 P--TFP------SLLVIGCYETLEL 502 (545)
Q Consensus 486 p--~~~------~l~~~~~dg~I~i 502 (545)
| .+. .++.++.+|.|.+
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ecCCCCcccccceEEEEecCCEEEE
Confidence 4 222 4888889998773
No 350
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.11 E-value=1.7e-06 Score=88.25 Aligned_cols=197 Identities=12% Similarity=0.092 Sum_probs=127.0
Q ss_pred CeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCeE--EEEeccCCccEEEEEEcC-CCCEEEEEe----CCCeEEEEECC
Q 009059 265 KVESCHFSPDG--KLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSS----ADRTVRVWDTE 335 (545)
Q Consensus 265 ~V~~l~~spdg--~~latg~~dg~I~lwd~~~~~~--~~~l~~h~~~V~~l~~sp-~~~~l~t~s----~dg~I~vwd~~ 335 (545)
.+.|+++.-+. ..+++|..+|.|.+-....... .....+|....++++|++ |.+.||.|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 46677766543 4789999999999987654222 234567888999999998 566777763 25679999998
Q ss_pred CCC----eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC
Q 009059 336 NPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 336 ~~~----~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
+.- .......+-.....+++|..+ ..++.+|.....+.++|++.............+..+.+.|-....++...|
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~d 216 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSD 216 (783)
T ss_pred cccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecccc
Confidence 651 111111123345668888865 456668888889999999843222211122346667777844456667779
Q ss_pred CeEEEEEC-CCCE-EEEEecC----CCCCEEEEEEcCCCC-EEEEEe--CCcEEEEEcCC
Q 009059 412 NYISILDV-ETQV-CRLKLQG----HKNQVHSVCWNTSGE-YLASVS--DELVRVWSIGS 462 (545)
Q Consensus 412 g~I~i~d~-~~~~-~~~~~~~----h~~~I~~l~~sp~g~-~l~s~s--dg~I~vwd~~~ 462 (545)
|.|.+||. +.-+ ++..+.. ....+..++|+|... .+++.. .++|+++|+..
T Consensus 217 g~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 217 GDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 99999993 3322 2222221 122489999999643 444455 55999999864
No 351
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.11 E-value=0.0014 Score=64.00 Aligned_cols=240 Identities=12% Similarity=0.161 Sum_probs=150.3
Q ss_pred cccccCCCCCCcccceeeeeecCCceeeEEEEeecCCCC----CeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCeEEE
Q 009059 226 VESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS----KVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKS 299 (545)
Q Consensus 226 ~~~~~s~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~----~V~~l~~spdg~~latg~--~dg~I~lwd~~~~~~~~ 299 (545)
.+.|.+....+.+.-.+.+||..+-....++.....|.. ....++++.||++++... -.-.|.|-|+...+.+.
T Consensus 53 a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 53 AETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEE
T ss_pred EEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceee
Confidence 455666666677788999999999887777776655332 233468899999888764 34679999999998887
Q ss_pred EeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE----eccCcccEE-EEEEeCCCCcEEEEEcCCCcEE
Q 009059 300 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT----FTGHSTTVM-SLDFHPSKEDLLCSCDNNSEIR 374 (545)
Q Consensus 300 ~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~----~~~h~~~V~-~l~~~p~~~~ll~s~s~dg~I~ 374 (545)
.+.-. +.. +.|-.....|.+-|.||.+.-..+......... |.....++. .-++...+..+++ -+.+|.|+
T Consensus 133 ei~~P-GC~--~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F-~Sy~G~v~ 208 (342)
T PF06433_consen 133 EIDTP-GCW--LIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYF-VSYEGNVY 208 (342)
T ss_dssp EEEGT-SEE--EEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEE-EBTTSEEE
T ss_pred eecCC-CEE--EEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEE-EecCCEEE
Confidence 77532 211 112112346888889999999988844332221 112222222 3334444444443 45688888
Q ss_pred EEECCCCceee--EEec-----------cCCeeEEEEeCCCCEEEEEECC---C-------eEEEEECCCCEEEEEecCC
Q 009059 375 YWSINNGSCAG--VFKC-----------QSGATQMRFQPRLGRILAAAIE---N-------YISILDVETQVCRLKLQGH 431 (545)
Q Consensus 375 lwd~~~~~~~~--~~~~-----------~~~v~~l~~sp~~~~l~~~~~d---g-------~I~i~d~~~~~~~~~~~~h 431 (545)
-.|+....... .+.. +++..-+++++..++|++.-.. + .|.+||+.+++.+..+..
T Consensus 209 ~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l- 287 (342)
T PF06433_consen 209 SADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL- 287 (342)
T ss_dssp EEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-
T ss_pred EEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-
Confidence 88887654322 2221 2345568888877777764421 1 588999999999988873
Q ss_pred CCCEEEEEEcCCCC-EEEEEe--CCcEEEEEcCCCCCcceEEEEe
Q 009059 432 KNQVHSVCWNTSGE-YLASVS--DELVRVWSIGSGSKGECIHELS 473 (545)
Q Consensus 432 ~~~I~~l~~sp~g~-~l~s~s--dg~I~vwd~~~~~~~~~i~~~~ 473 (545)
..++.+|..+.+.+ +|++.+ ++.+.+||..++ +.+.++.
T Consensus 288 ~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG---k~~~~~~ 329 (342)
T PF06433_consen 288 EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG---KLVRSIE 329 (342)
T ss_dssp EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-----EEEEE-
T ss_pred CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC---cEEeehh
Confidence 34677999998776 555544 679999999998 5555554
No 352
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.10 E-value=0.0052 Score=59.84 Aligned_cols=224 Identities=14% Similarity=0.166 Sum_probs=130.7
Q ss_pred CCCCEEEEEeCCCcEEEEEcC-CCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE--------
Q 009059 273 PDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-------- 343 (545)
Q Consensus 273 pdg~~latg~~dg~I~lwd~~-~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~-------- 343 (545)
..++.|+.|+.+| +.+++.. ..+...... ...|..+...++-+.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3577899999888 9999983 333333332 23399999999877777764 599999998754321100
Q ss_pred -----eccCcccEEEEE--EeCCCCcEEEEEcCCCcEEEEECCCC-----ceeeEEeccCCeeEEEEeCCCCEEEEEECC
Q 009059 344 -----FTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 344 -----~~~h~~~V~~l~--~~p~~~~ll~s~s~dg~I~lwd~~~~-----~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
.......+...+ -...+...++.+ ....|.+|..... ...+.+.....+..++|.. +.++++. .
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~--~~i~v~~-~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG--NKICVGT-S 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC--CEEEEEe-C
Confidence 111223444444 122333444333 3558888877542 5667788889999999993 5565555 5
Q ss_pred CeEEEEECCCCEEEEEecCC------------CCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCce
Q 009059 412 NYISILDVETQVCRLKLQGH------------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF 479 (545)
Q Consensus 412 g~I~i~d~~~~~~~~~~~~h------------~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v 479 (545)
+...+.|+.++.....+... ..++..+.. +++.+|++ .+..-.+.|.. |.... -..+.-. ...
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~g~fv~~~-G~~~r-~~~i~W~-~~p 231 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNIGVFVNKN-GEPSR-KSTIQWS-SAP 231 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecceEEEEcCC-CCcCc-ccEEEcC-Cch
Confidence 55888899876544333211 123333343 34566654 34444444443 22111 1222222 244
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEE
Q 009059 480 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 512 (545)
Q Consensus 480 ~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~ 512 (545)
..+++ ..++|++... +.|.||++.+++.+.
T Consensus 232 ~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 232 QSVAY--SSPYLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred hEEEE--ECCEEEEECC-CEEEEEECcCCcEEE
Confidence 45555 3355666555 569999999998873
No 353
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.08 E-value=0.0073 Score=57.25 Aligned_cols=200 Identities=13% Similarity=0.179 Sum_probs=114.4
Q ss_pred EEeecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEeccC-CccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 256 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~-~latg~~dg~I~lwd~~~~~~~~~l~~h-~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
.+.+.+-...|..|+|.|+.+ ++|+....+.|..++. .|+.+..+.-. .+..-.|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 345666667799999999755 5666667788888886 47777766433 35688899988887777766689999998
Q ss_pred CCCCCee--e---eEe-----ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC---CceeeEEe---------ccC
Q 009059 334 TENPDYS--L---RTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGVFK---------CQS 391 (545)
Q Consensus 334 ~~~~~~~--~---~~~-----~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~---~~~~~~~~---------~~~ 391 (545)
+...... . ..+ ..+...+-.++|.+.++.++++. ...-..+|.+.. ...+.... .-.
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCccceeeccccccccccceec
Confidence 8432211 1 111 12445689999999988888554 444455555543 21111111 123
Q ss_pred CeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCC---------CCEEEEEEcCCCCEEEEEeCCcEEEE
Q 009059 392 GATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVW 458 (545)
Q Consensus 392 ~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~---------~~I~~l~~sp~g~~l~s~sdg~I~vw 458 (545)
.+..+.++|..+.+++-+. ...|..+| .+|+.+..+.-.. ...-.|+|.++|++.++..-+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 4788999998777776665 67888899 5666555443222 35788999999987777665555554
No 354
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.04 E-value=0.0028 Score=61.78 Aligned_cols=215 Identities=13% Similarity=0.125 Sum_probs=125.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee----------
Q 009059 316 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG---------- 385 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~---------- 385 (545)
.++.|+.|+.+| +.++++.......+.. +...|..+...++-+.+++.+ |+.++++++..-....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc--CCccEEEEchhhcccccccccccccc
Confidence 577899999998 8999984333322222 233499999999876666554 6999999987644333
Q ss_pred -----EEeccCCeeEEE--EeCCCCEEEEEECCCeEEEEECCCC-----EEEEEecCCCCCEEEEEEcCCCCEEEEEeCC
Q 009059 386 -----VFKCQSGATQMR--FQPRLGRILAAAIENYISILDVETQ-----VCRLKLQGHKNQVHSVCWNTSGEYLASVSDE 453 (545)
Q Consensus 386 -----~~~~~~~v~~l~--~sp~~~~l~~~~~dg~I~i~d~~~~-----~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg 453 (545)
.+....++...+ -...+...+++.....|.+|..... +....+. -...+.+++|. +..|+.+..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence 122223344444 2234556677777779888887653 3445554 45788999998 6778888777
Q ss_pred cEEEEEcCCCCCcceEEEEeeC----------CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeE
Q 009059 454 LVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSS 522 (545)
Q Consensus 454 ~I~vwd~~~~~~~~~i~~~~~~----------~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~ 522 (545)
...+.|+.++.. ..+...... ..++..+. -+++.+|++- +..-.+.|..+.... ....-...+.+
T Consensus 158 ~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~ 233 (275)
T PF00780_consen 158 GFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQS 233 (275)
T ss_pred ceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhE
Confidence 799999987643 222211111 11222223 3344555442 333334454332221 11112234556
Q ss_pred EEEeCCCCEEEEEeCCCcEEEcC
Q 009059 523 LAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 523 l~~spd~~~las~s~Dg~I~iWd 545 (545)
+++. ..||+..+.++ |.||+
T Consensus 234 ~~~~--~pyli~~~~~~-iEV~~ 253 (275)
T PF00780_consen 234 VAYS--SPYLIAFSSNS-IEVRS 253 (275)
T ss_pred EEEE--CCEEEEECCCE-EEEEE
Confidence 6663 45777776644 88774
No 355
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.99 E-value=0.0044 Score=60.82 Aligned_cols=216 Identities=11% Similarity=0.054 Sum_probs=130.2
Q ss_pred EEEcCCCCEE-EEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-
Q 009059 311 VRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK- 388 (545)
Q Consensus 311 l~~sp~~~~l-~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~- 388 (545)
..|.++...| .+--..+.|.-|+..++.. ..+. +...+.++.....+..++ ++ +..+++++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g~Lv-~~--~~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGGRLI-AC--EHGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCCeEE-EE--ccccEEEeccCCceeEEecc
Confidence 3466666644 4444577888898876653 3333 233445555444444444 55 3447778876665533222
Q ss_pred c-----cCCeeEEEEeCCCCEEEEEEC-----------CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-
Q 009059 389 C-----QSGATQMRFQPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 451 (545)
Q Consensus 389 ~-----~~~v~~l~~sp~~~~l~~~~~-----------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s- 451 (545)
. ....+.+.+.|+|.+.+.... -|.|+.+|. .+..+..+..+-..-+.|+||||++.|+.+.
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 1 123567888999665554333 134666665 4555555665566678999999999888877
Q ss_pred -CCcEEEEEcCC--CCCcc--eEEEEeeCCCceEEEEEcCCCCEEEEEEcCC-eEEEEeCCCCeEE-EeccCCCCeeEEE
Q 009059 452 -DELVRVWSIGS--GSKGE--CIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAHDKLVSSLA 524 (545)
Q Consensus 452 -dg~I~vwd~~~--~~~~~--~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-~I~iwd~~~~~~~-~~~~h~~~V~~l~ 524 (545)
.+.|..|++.. +.... ....+....+..-.++...+|.+.+++...| .|.+|+.. ++.+ .+.-....+++++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 46888887752 21111 1222223445666778888888665554444 89999998 6666 4444447788888
Q ss_pred Ee-CCCCEEEE
Q 009059 525 AS-TVNGMVAS 534 (545)
Q Consensus 525 ~s-pd~~~las 534 (545)
|- ++.+.|..
T Consensus 262 FgG~~~~~L~i 272 (307)
T COG3386 262 FGGPDLNTLYI 272 (307)
T ss_pred EeCCCcCEEEE
Confidence 85 44454443
No 356
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.97 E-value=0.015 Score=62.05 Aligned_cols=187 Identities=10% Similarity=0.030 Sum_probs=114.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCC-ccEE---E-------EEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWIT---D-------VRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~-~~V~---~-------l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
+..|++++.++.|+-.|..+|+.+..+.... ..+. + +++ .+..++.++.|+.|...|..+++..-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4467777778899999999999887764311 1111 1 122 2346777888999999999998864332
Q ss_pred ecc-Cc--ccEEE-EEEeCCCCcEEEEEc-----CCCcEEEEECCCCceeeEEeccCC----------------------
Q 009059 344 FTG-HS--TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSG---------------------- 392 (545)
Q Consensus 344 ~~~-h~--~~V~~-l~~~p~~~~ll~s~s-----~dg~I~lwd~~~~~~~~~~~~~~~---------------------- 392 (545)
-.. +. ..+.+ ..+. + ..+++..+ .+|.|..+|.++|+.+..+.....
T Consensus 147 ~~~~~~~~~~~tssP~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred ccccccccccccCCcEEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 211 11 01111 1111 2 33443222 268999999999998876542110
Q ss_pred -----------eeEEEEeCCCCEEEEEECC-----C-----------eEEEEECCCCEEEEEecCCCCC---------EE
Q 009059 393 -----------ATQMRFQPRLGRILAAAIE-----N-----------YISILDVETQVCRLKLQGHKNQ---------VH 436 (545)
Q Consensus 393 -----------v~~l~~sp~~~~l~~~~~d-----g-----------~I~i~d~~~~~~~~~~~~h~~~---------I~ 436 (545)
-..+.+.+..+.++.+... + .|.-.|+++++.+..++..... ..
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 1134777777777776622 2 6888899999988777652221 12
Q ss_pred EEEEcCCCC---EEEEEe-CCcEEEEEcCCCCC
Q 009059 437 SVCWNTSGE---YLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 437 ~l~~sp~g~---~l~s~s-dg~I~vwd~~~~~~ 465 (545)
-+.+..+|+ .|+.+. +|.++++|-.+++.
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 223334665 666777 89999999988853
No 357
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.93 E-value=0.0015 Score=66.47 Aligned_cols=207 Identities=14% Similarity=0.125 Sum_probs=121.4
Q ss_pred eeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEE--ecc------CCccEEEEEEcC-----CC
Q 009059 251 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEE------HTQWITDVRFSP-----SL 317 (545)
Q Consensus 251 ~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~--l~~------h~~~V~~l~~sp-----~~ 317 (545)
..|.++..+....++|++|+.|.=| ++|.|..+|.+.|.|++.-..+.. +.. ....|+++.|.- |+
T Consensus 74 ~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 74 EGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred cccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 3477888888889999999998555 999999999999999988777654 222 345688898863 33
Q ss_pred ---CEEEEEeCCCeEEEEECCC---CCeeee---EeccCcccEEEEEEe-CCC--------------------CcEEEEE
Q 009059 318 ---SRLATSSADRTVRVWDTEN---PDYSLR---TFTGHSTTVMSLDFH-PSK--------------------EDLLCSC 367 (545)
Q Consensus 318 ---~~l~t~s~dg~I~vwd~~~---~~~~~~---~~~~h~~~V~~l~~~-p~~--------------------~~ll~s~ 367 (545)
-+|++|...|.+.+|.+.- +.+.+. ....+.++|..|..- .+. ..+++.+
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 4788999999999998751 222111 222456677666632 221 1244344
Q ss_pred cCCCcEEEEECCCCceeeEEeccCC--eeEEEEe-----CCCCEEEEEECCCeEEEEECCCCEEEEEecCCC----CCEE
Q 009059 368 DNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQ-----PRLGRILAAAIENYISILDVETQVCRLKLQGHK----NQVH 436 (545)
Q Consensus 368 s~dg~I~lwd~~~~~~~~~~~~~~~--v~~l~~s-----p~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~----~~I~ 436 (545)
+ +..++++...+.+...... ... ...+.+- ..+..|++...+|.|++|.+...+.+..+.-+. ..+.
T Consensus 233 S-e~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~ 310 (395)
T PF08596_consen 233 S-ESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLS 310 (395)
T ss_dssp --SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHT
T ss_pred c-ccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccc
Confidence 4 7789999998877766554 332 2334442 245567788889999999999988887776532 2344
Q ss_pred EEEEcCCCCEEEEEeCCcEEEEEc
Q 009059 437 SVCWNTSGEYLASVSDELVRVWSI 460 (545)
Q Consensus 437 ~l~~sp~g~~l~s~sdg~I~vwd~ 460 (545)
..+++++|..++-.+...+.++.+
T Consensus 311 ~ssis~~Gdi~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 311 SSSISRNGDIFYWTGPSEIQLFSV 334 (395)
T ss_dssp T-EE-TTS-EEEE-SSSEEEEEEE
T ss_pred ccEECCCCCEEEEeCcccEEEEEE
Confidence 566788898887777665555554
No 358
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.91 E-value=0.01 Score=61.60 Aligned_cols=221 Identities=12% Similarity=0.070 Sum_probs=125.6
Q ss_pred cEEEEEEcCCCCEEEEE-eCC----CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC----------C
Q 009059 307 WITDVRFSPSLSRLATS-SAD----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----------S 371 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~-s~d----g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d----------g 371 (545)
.+....++|++++||.+ +.. ..|+++|+.+++.....+... ....+.|.+++..++++...+ .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34467899999998865 333 369999999886533333321 122399999988888776433 2
Q ss_pred cEEEEECCCCcee--eEEeccC--C-eeEEEEeCCCCEEEEEEC---C-CeEEEEECCCC-----EEEEEecCCCCCEEE
Q 009059 372 EIRYWSINNGSCA--GVFKCQS--G-ATQMRFQPRLGRILAAAI---E-NYISILDVETQ-----VCRLKLQGHKNQVHS 437 (545)
Q Consensus 372 ~I~lwd~~~~~~~--~~~~~~~--~-v~~l~~sp~~~~l~~~~~---d-g~I~i~d~~~~-----~~~~~~~~h~~~I~~ 437 (545)
.|+.|.+.+.... ..+.... . ...+..++++.++++... + ..+++.|+..+ ..........+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 4788888776433 3343322 2 567888999998876554 3 46889999874 333333323333344
Q ss_pred EEEcCCCCEEEEEe----CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCC-CCe
Q 009059 438 VCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMT-ENK 509 (545)
Q Consensus 438 l~~sp~g~~l~s~s----dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~-~~~ 509 (545)
+... .+.+++... .+.|...++...........+..+...+.-..+...+.+|+....++ .|+++++. +..
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 4443 444544443 34677778777653223334444555444344444455566555444 89999999 555
Q ss_pred EEEecc-CCCCeeEEEEeCCCC
Q 009059 510 TLTLSA-HDKLVSSLAASTVNG 530 (545)
Q Consensus 510 ~~~~~~-h~~~V~~l~~spd~~ 530 (545)
...+.. -.+.|..+...+++.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-S
T ss_pred EeeecCCcceEEeccCCCCCCC
Confidence 543332 334455655555554
No 359
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.87 E-value=0.041 Score=56.81 Aligned_cols=192 Identities=11% Similarity=0.073 Sum_probs=102.0
Q ss_pred cEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-e----eeeEeccCcccEEEEEEeCCC
Q 009059 286 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-Y----SLRTFTGHSTTVMSLDFHPSK 360 (545)
Q Consensus 286 ~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~-~----~~~~~~~h~~~V~~l~~~p~~ 360 (545)
.|.||+.. |+++..+.-..+.|.++.|..+. .|++...||.++++|+.... . .+....-....+....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 58999864 56665554333899999998754 56666799999999986322 0 011111111222223333333
Q ss_pred CcEEEEEcCCCcEEEEECCCCc-eeeEE-eccCC---------eeE-EEEeCCCCEEEEEECCCeEEEEECCCCEEEEEe
Q 009059 361 EDLLCSCDNNSEIRYWSINNGS-CAGVF-KCQSG---------ATQ-MRFQPRLGRILAAAIENYISILDVETQVCRLKL 428 (545)
Q Consensus 361 ~~ll~s~s~dg~I~lwd~~~~~-~~~~~-~~~~~---------v~~-l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~ 428 (545)
+++. ..++.+.+.+-.... ..+.+ ..... ... ..++.+....+....++.+.+.+...... +
T Consensus 140 --ivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 140 --IVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred --EEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 3322 224444443222211 11111 10010 111 23444444455555555666444332211 2
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC-CCceEEEEEcCCCC
Q 009059 429 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFP 489 (545)
Q Consensus 429 ~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~-~~~v~~~~~sp~~~ 489 (545)
. ..+++..++.||+|++||.-. +|.+.|.+..-. ..+.++... ......+.|.-+..
T Consensus 214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCCCcEEEEECCCc
Confidence 2 246899999999999999988 788888875443 344444433 34556777766543
No 360
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.83 E-value=0.0037 Score=68.19 Aligned_cols=141 Identities=9% Similarity=0.110 Sum_probs=98.8
Q ss_pred CCEEEEE-eCCCeEEEEECCCCCeeeeEeccCccc-EEEEEEeC-----CCCcEEEEEcCCCcEEEEECCCCc--eee--
Q 009059 317 LSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHP-----SKEDLLCSCDNNSEIRYWSINNGS--CAG-- 385 (545)
Q Consensus 317 ~~~l~t~-s~dg~I~vwd~~~~~~~~~~~~~h~~~-V~~l~~~p-----~~~~ll~s~s~dg~I~lwd~~~~~--~~~-- 385 (545)
.++|+.- .....|+-.|++.++. +..+..|... |..++-.. .....+ .|-.+..|..||.+-.. ++.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKV-V~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKV-VEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcE-EEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceeecc
Confidence 3444443 3457889999998886 7777766644 55554321 122334 56668889999998532 221
Q ss_pred --EEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEc
Q 009059 386 --VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSI 460 (545)
Q Consensus 386 --~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~ 460 (545)
.+.......|++-+.+ ++|++|+.+|.|++||--..+....+.+-..+|..|+.+.||++|++.++..+.+++.
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred ccccccCCCceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 2223344666766665 8999999999999999544444445667789999999999999999999998999886
No 361
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.77 E-value=0.085 Score=56.34 Aligned_cols=149 Identities=13% Similarity=0.088 Sum_probs=87.5
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEeccCCcc-EEEEEEcC---CCCEEEEEe------CCCeEEEEECCCCCeeeeEec
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSP---SLSRLATSS------ADRTVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~-V~~l~~sp---~~~~l~t~s------~dg~I~vwd~~~~~~~~~~~~ 345 (545)
..++.++.|+.|.-.|.++|+.+......... -..+.-+| ++ .++++. .+|.|..+|.++++...+...
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 46677788999999999999998765421100 00111112 34 445443 268999999998875332111
Q ss_pred cC------------------------------cccEE-EEEEeCCCCcEEEEEcC----CC-----------cEEEEECC
Q 009059 346 GH------------------------------STTVM-SLDFHPSKEDLLCSCDN----NS-----------EIRYWSIN 379 (545)
Q Consensus 346 ~h------------------------------~~~V~-~l~~~p~~~~ll~s~s~----dg-----------~I~lwd~~ 379 (545)
.. ...++ .+.+.|..+.+++..++ ++ .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 10 01122 23555554333322222 12 57778999
Q ss_pred CCceeeEEeccC----------CeeEEEEeCCCC---EEEEEECCCeEEEEECCCCEEE
Q 009059 380 NGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCR 425 (545)
Q Consensus 380 ~~~~~~~~~~~~----------~v~~l~~sp~~~---~l~~~~~dg~I~i~d~~~~~~~ 425 (545)
+|+....+.... ...-+.+..+++ .++.+..+|.++++|.++++.+
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 999888776311 122233334555 5667888999999999999876
No 362
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.69 E-value=0.044 Score=55.19 Aligned_cols=221 Identities=9% Similarity=0.090 Sum_probs=109.7
Q ss_pred CCCEEEEEe-CCCcEEEEEcCC----CeEEEEecc---CC----ccEEEEEEcCCCCEEEEEeC------CCeEEEEECC
Q 009059 274 DGKLLATGG-HDKKAVLWCTES----FTVKSTLEE---HT----QWITDVRFSPSLSRLATSSA------DRTVRVWDTE 335 (545)
Q Consensus 274 dg~~latg~-~dg~I~lwd~~~----~~~~~~l~~---h~----~~V~~l~~sp~~~~l~t~s~------dg~I~vwd~~ 335 (545)
+.++|+..+ ..+.|+|.|+.+ -++.++++. +. .....+..-|+|.+++++-. -|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777776 678999999873 344555542 11 22333444578888887632 2467777777
Q ss_pred CCCeeeeEecc---CcccEEEEEEeCCCCcEEEEEc--------------------CCCcEEEEECCCCceeeEEeccCC
Q 009059 336 NPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCD--------------------NNSEIRYWSINNGSCAGVFKCQSG 392 (545)
Q Consensus 336 ~~~~~~~~~~~---h~~~V~~l~~~p~~~~ll~s~s--------------------~dg~I~lwd~~~~~~~~~~~~~~~ 392 (545)
+... ...... ....-+.+-|.|..+ ++++.. ...++.+||+.+.+.+.++.....
T Consensus 166 tf~v-~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 TFEV-KGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T--E-EEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cccc-cceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 6443 333332 123455677788654 444543 235899999999999999987643
Q ss_pred ---eeEEEEeC--CCCEEEEEE-CCCeEEEEEC-CCCE----EEEEecCC-----------------CCCEEEEEEcCCC
Q 009059 393 ---ATQMRFQP--RLGRILAAA-IENYISILDV-ETQV----CRLKLQGH-----------------KNQVHSVCWNTSG 444 (545)
Q Consensus 393 ---v~~l~~sp--~~~~l~~~~-~dg~I~i~d~-~~~~----~~~~~~~h-----------------~~~I~~l~~sp~g 444 (545)
+..+.|.. +..+=++++ ....|..|-- +.++ .+..+... ..-|+.|..|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 55677754 444444433 3555555533 3332 22222211 2457999999999
Q ss_pred CEEEEEe--CCcEEEEEcCCCCCcceEEEEeeC----------------CCceEEEEEcCCCCEEEEEEc
Q 009059 445 EYLASVS--DELVRVWSIGSGSKGECIHELSCT----------------GNKFHSCVFHPTFPSLLVIGC 496 (545)
Q Consensus 445 ~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~----------------~~~v~~~~~sp~~~~l~~~~~ 496 (545)
++|.... +|.|+.||+......+.+..+... .+...-+..|.||+.|++..+
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 9999988 999999999987766666554321 123467888999998887754
No 363
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00023 Score=73.09 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=77.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~-~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
.|.-+.|+|.-.++|++..+|.|.++.+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++.|++++......
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence 46779999999999999999999999988 788888887877787 9999999999999999999999999988763332
Q ss_pred eccCcccEEEEEEeC
Q 009059 344 FTGHSTTVMSLDFHP 358 (545)
Q Consensus 344 ~~~h~~~V~~l~~~p 358 (545)
...-...|.++.|.+
T Consensus 101 ~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 101 LFSVETDISKGIWDR 115 (665)
T ss_pred ccccccchheeeccc
Confidence 333456778888863
No 364
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.65 E-value=0.0063 Score=65.39 Aligned_cols=207 Identities=13% Similarity=0.130 Sum_probs=114.0
Q ss_pred CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEe------CCC--eEEEEECCCCCeeeeEeccCcccEEEEE
Q 009059 284 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS------ADR--TVRVWDTENPDYSLRTFTGHSTTVMSLD 355 (545)
Q Consensus 284 dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s------~dg--~I~vwd~~~~~~~~~~~~~h~~~V~~l~ 355 (545)
+|.+.-.+-.....+.-..+....+...+++|+|+.++... .|. .|.+++.. ........+. ..+.-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g~--~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEGH--SLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecCC--CCCCce
Confidence 55554443222222222223334678899999999887765 244 44444543 2222222332 378889
Q ss_pred EeCCCCcEEEEEc-----------CCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEE---EECCC
Q 009059 356 FHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI---LDVET 421 (545)
Q Consensus 356 ~~p~~~~ll~s~s-----------~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i---~d~~~ 421 (545)
|+|++..+.+... ..+.+.+.++..++... .....|..+.|+|+|.+++... ++.|++ -....
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 9999776554432 22345555665554433 3346799999999999988776 577777 45445
Q ss_pred CEEEE----Eec-CCCCCEEEEEEcCCCCEEEEEeCC--cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEE
Q 009059 422 QVCRL----KLQ-GHKNQVHSVCWNTSGEYLASVSDE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 494 (545)
Q Consensus 422 ~~~~~----~~~-~h~~~I~~l~~sp~g~~l~s~sdg--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~ 494 (545)
+.... .+. .-...+..+.|..++.+++...++ .+...++.... .....-......+..++-.+. .+++.
T Consensus 481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~--~~~~~~~n~~~~v~~vaa~~~--~iyv~ 556 (591)
T PRK13616 481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN--SDALPSRNLSAPVVAVAASPS--TVYVT 556 (591)
T ss_pred CceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcc--ccccCCCCccCceEEEecCCc--eEEEE
Confidence 54111 122 223346889999999976554444 34444444221 111011112445666666653 46666
Q ss_pred EcCCeEE
Q 009059 495 GCYETLE 501 (545)
Q Consensus 495 ~~dg~I~ 501 (545)
..++.+.
T Consensus 557 ~~~g~~~ 563 (591)
T PRK13616 557 DARAVLQ 563 (591)
T ss_pred cCCceEE
Confidence 6666443
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.61 E-value=0.04 Score=56.85 Aligned_cols=188 Identities=9% Similarity=0.096 Sum_probs=98.2
Q ss_pred eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-----CCeeEE-E---E
Q 009059 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQM-R---F 398 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-----~~v~~l-~---~ 398 (545)
.|+||+..... +..+.-..+.+.++.|..+ +.|+ .-..||.+++||+.. +. .+... ..+... . +
T Consensus 62 ~I~iys~sG~l--l~~i~w~~~~iv~~~wt~~-e~Lv-vV~~dG~v~vy~~~G-~~--~fsl~~~i~~~~v~e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYSSSGKL--LSSIPWDSGRIVGMGWTDD-EELV-VVQSDGTVRVYDLFG-EF--QFSLGEEIEEEKVLECRIFAIW 134 (410)
T ss_pred EEEEECCCCCE--eEEEEECCCCEEEEEECCC-CeEE-EEEcCCEEEEEeCCC-ce--eechhhhccccCcccccccccc
Confidence 47777766332 3332222378999999886 4555 445699999999873 33 22211 122222 1 1
Q ss_pred eCCCCEEEEEECCCeEEEEECCCCE-EEEEe---cCCCC------CEEE-EEEcCCCCEEEEEe-CCcEEEEEcCCCCCc
Q 009059 399 QPRLGRILAAAIENYISILDVETQV-CRLKL---QGHKN------QVHS-VCWNTSGEYLASVS-DELVRVWSIGSGSKG 466 (545)
Q Consensus 399 sp~~~~l~~~~~dg~I~i~d~~~~~-~~~~~---~~h~~------~I~~-l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~ 466 (545)
..+.+ +++-+.++.+++..--... ....+ ..... .... ..++.+....+... ++.+.+.+-...
T Consensus 135 ~~~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~--- 210 (410)
T PF04841_consen 135 FYKNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF--- 210 (410)
T ss_pred cCCCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc---
Confidence 12223 4444555655555332221 11111 11000 0000 22333444333333 445553432211
Q ss_pred ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Eec-cCCCCeeEEEEeCCCC
Q 009059 467 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHDKLVSSLAASTVNG 530 (545)
Q Consensus 467 ~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~-~h~~~V~~l~~spd~~ 530 (545)
..+. ..+++..+++||++++++.-..+|.+.+...+-.+.. .+. .-......|.|.-++.
T Consensus 211 ---~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 211 ---KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred ---cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 0111 2468999999999999999999999998876555544 222 2235667777776543
No 366
>PRK10115 protease 2; Provisional
Probab=97.61 E-value=0.18 Score=55.65 Aligned_cols=238 Identities=9% Similarity=-0.015 Sum_probs=122.7
Q ss_pred eEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC------CeEEEEEC
Q 009059 266 VESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDT 334 (545)
Q Consensus 266 V~~l~~spdg~~latg~~d-----g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d------g~I~vwd~ 334 (545)
+..+.|+|||++||.+... ..|++.|+.+++.+...-.... ..++|.+|++.|+....+ ..|..+++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 5568899999998876432 3688889988764322211222 459999998877665442 36778888
Q ss_pred CCCCe-eeeEeccCcccEE-EEEEeCCCCcEEEEEc--CCCcEEEEECC--CCceeeEEeccCCeeEEEEeCCCCEEEEE
Q 009059 335 ENPDY-SLRTFTGHSTTVM-SLDFHPSKEDLLCSCD--NNSEIRYWSIN--NGSCAGVFKCQSGATQMRFQPRLGRILAA 408 (545)
Q Consensus 335 ~~~~~-~~~~~~~h~~~V~-~l~~~p~~~~ll~s~s--~dg~I~lwd~~--~~~~~~~~~~~~~v~~l~~sp~~~~l~~~ 408 (545)
.++.. ....+........ .+..+.++..+++... .++.+.+|+.. .+.....+.....+..-... .+..++..
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~ 285 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDH-YQHRFYLR 285 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEe-CCCEEEEE
Confidence 87621 1233333233333 2333436666664443 34678998853 34433333333333222222 23455554
Q ss_pred ECC----CeEEEEECCCCEEEEEecCC-C-CCEEEEEEcCCCCEEEEEe-CC--cEEEEEcCCCCCcceEEEEe-eCCCc
Q 009059 409 AIE----NYISILDVETQVCRLKLQGH-K-NQVHSVCWNTSGEYLASVS-DE--LVRVWSIGSGSKGECIHELS-CTGNK 478 (545)
Q Consensus 409 ~~d----g~I~i~d~~~~~~~~~~~~h-~-~~I~~l~~sp~g~~l~s~s-dg--~I~vwd~~~~~~~~~i~~~~-~~~~~ 478 (545)
+.. ..|...++........+..+ . ..|..+.+. .+.++++.. ++ .+.+++.... .+..+. .....
T Consensus 286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~----~~~~l~~~~~~~ 360 (686)
T PRK10115 286 SNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR----EVIGIAFDDPAY 360 (686)
T ss_pred EcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC----ceEEecCCCCce
Confidence 442 24555555521112223334 3 367888887 334444444 66 4555554322 222322 11222
Q ss_pred eEEEEEc--CCCC-EEEEEEcC---CeEEEEeCCCCeEE
Q 009059 479 FHSCVFH--PTFP-SLLVIGCY---ETLELWNMTENKTL 511 (545)
Q Consensus 479 v~~~~~s--p~~~-~l~~~~~d---g~I~iwd~~~~~~~ 511 (545)
+..+.++ +++. .++..++. +.++.||+.+++..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR 399 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence 3333344 3433 34333332 38899999877544
No 367
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.55 E-value=0.045 Score=54.61 Aligned_cols=241 Identities=12% Similarity=0.117 Sum_probs=119.1
Q ss_pred EcCCCeEEEEeccCCccEEE-----EEEcCCCCEEEEEeC-CC--eEEEEECCCCCeeeeEeccCc-ccEEEEEEeCCCC
Q 009059 291 CTESFTVKSTLEEHTQWITD-----VRFSPSLSRLATSSA-DR--TVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKE 361 (545)
Q Consensus 291 d~~~~~~~~~l~~h~~~V~~-----l~~sp~~~~l~t~s~-dg--~I~vwd~~~~~~~~~~~~~h~-~~V~~l~~~p~~~ 361 (545)
|..+|..+..+..+...-.. =+|.++|+.|+.++. || .+.+.|+.+++ +..+.... .......++++..
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSPDDR 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-TTSS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--EEECccCCCCCccceEEecCCC
Confidence 56677777666543332222 356778876665544 55 56666777655 45555433 2233566678877
Q ss_pred cEEEEEcCCCcEEEEECCCCceeeEEeccCCee-EEEEe--CCCCEEEEEEC-----------------------CCeEE
Q 009059 362 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQ--PRLGRILAAAI-----------------------ENYIS 415 (545)
Q Consensus 362 ~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~-~l~~s--p~~~~l~~~~~-----------------------dg~I~ 415 (545)
.+++.. .+..|+-.|+.+.+....+..+.... ...|. .++.. +++.. ...|.
T Consensus 94 ~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~ 171 (386)
T PF14583_consen 94 ALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIF 171 (386)
T ss_dssp EEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEE
T ss_pred eEEEEE-CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEE
Confidence 766554 35689999999988777776666543 34553 34333 43331 12377
Q ss_pred EEECCCCEEEEEecCCCCCEEEEEEcCCCCE-EEEEeCC---c--EEEEEcCCCCC-cceEEEEeeCCCceEEEEEcCCC
Q 009059 416 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEY-LASVSDE---L--VRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTF 488 (545)
Q Consensus 416 i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~-l~s~sdg---~--I~vwd~~~~~~-~~~i~~~~~~~~~v~~~~~sp~~ 488 (545)
..|+.+++....+. ....+..+.|+|...- |+.|-+| . -|||-+++... ..++... .....+.-=-|.|+|
T Consensus 172 ~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG 249 (386)
T PF14583_consen 172 TIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDG 249 (386)
T ss_dssp EEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTS
T ss_pred EEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCC
Confidence 77888887666555 4678889999997654 4444454 2 37787765321 1222211 122334444689999
Q ss_pred CEEEEEEc-----CCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 489 PSLLVIGC-----YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 489 ~~l~~~~~-----dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
..|..-+. +..|.-+|..+++...+..- .....+-.++||+++|-=+.|
T Consensus 250 ~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 250 STIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp S-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred CEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCC
Confidence 87766443 22677788888765533222 234466668899888765554
No 368
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.50 E-value=0.0024 Score=69.66 Aligned_cols=127 Identities=9% Similarity=0.074 Sum_probs=91.4
Q ss_pred CCCeEEEEECCCCEEEEEecCCCCC-EEEEEEcC------CCCEEEEEeCCcEEEEEcCCCCCcceEEE-E--eeCCCce
Q 009059 410 IENYISILDVETQVCRLKLQGHKNQ-VHSVCWNT------SGEYLASVSDELVRVWSIGSGSKGECIHE-L--SCTGNKF 479 (545)
Q Consensus 410 ~dg~I~i~d~~~~~~~~~~~~h~~~-I~~l~~sp------~g~~l~s~sdg~I~vwd~~~~~~~~~i~~-~--~~~~~~v 479 (545)
....|+-.|++.|+.+..+..|... |..++-.. ....++.-+++.+..||.+-... .++.. . -.....+
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-ceeeccccccccCCCc
Confidence 4578999999999999999887654 66554321 23445555688999999986432 22221 1 1245567
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 480 HSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 480 ~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
.|++-+.+|. |++|+.+|.|++||--..+-. .+.+-..+|.+|..+.||++|+..+..
T Consensus 581 s~~aTt~~G~-iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 581 SCFATTEDGY-IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred eEEEecCCce-EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence 7887777775 999999999999995433322 555778999999999999988877654
No 369
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.50 E-value=0.16 Score=55.67 Aligned_cols=272 Identities=13% Similarity=0.112 Sum_probs=161.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEc--CCCeEEEEe--ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCT--ESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 339 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~--~~~~~~~~l--~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~ 339 (545)
..|.-..|--|..+|.++..||.+.-|.+ .++..-..- .-...++.--.|+..++.-+.+..|+-..+|..+ ++.
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kL 662 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKL 662 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcE
Confidence 34556666667889999999998876644 444433221 2235567667777665544445556666666654 233
Q ss_pred eeeEeccCcccEEEEE-Ee-CCCCcEEEEEcCCCcEEEEECCCCc--eeeEEeccCCeeEEEEeCCCCEEEEEEC-----
Q 009059 340 SLRTFTGHSTTVMSLD-FH-PSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILAAAI----- 410 (545)
Q Consensus 340 ~~~~~~~h~~~V~~l~-~~-p~~~~ll~s~s~dg~I~lwd~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~~~~~----- 410 (545)
....+. -..+..++ |+ +.....++++. .+.+++.-+..-. -++++........+++.+....+.+.+.
T Consensus 663 v~spls--~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~ 739 (1096)
T KOG1897|consen 663 VYSPLS--LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESS 739 (1096)
T ss_pred EEeccc--hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccc
Confidence 222221 11222222 22 22233454554 5668887766433 2344556667777888774333433332
Q ss_pred ------C---CeEEEEECCCCEEEEEecCC-CC---CEEEEEEcCC-CCEEEEEe-----------CCcEEEEEcCCCCC
Q 009059 411 ------E---NYISILDVETQVCRLKLQGH-KN---QVHSVCWNTS-GEYLASVS-----------DELVRVWSIGSGSK 465 (545)
Q Consensus 411 ------d---g~I~i~d~~~~~~~~~~~~h-~~---~I~~l~~sp~-g~~l~s~s-----------dg~I~vwd~~~~~~ 465 (545)
. ..++++|-.+-+.+...+-. .. .|.++.|..| +.++++|. .|.|.||.+.....
T Consensus 740 ~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 740 AEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred hhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 1 14777787776655543321 12 3455558776 67777764 25788888877544
Q ss_pred cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 466 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 466 ~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
.+.+++... .+.+.++..- +|+ +.++-...|++|++.+.+.+ .-..|..++..+...-.+..++.|..-+.|.+
T Consensus 820 L~~v~e~~v-~Gav~aL~~f-ngk--llA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 820 LELVAETVV-KGAVYALVEF-NGK--LLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred eeeeeeeee-ccceeehhhh-CCe--EEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 455555443 3334444322 343 45556668999999998666 44578889999999999999999987776654
No 370
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.46 E-value=0.076 Score=54.19 Aligned_cols=88 Identities=23% Similarity=0.350 Sum_probs=56.8
Q ss_pred EEEEcCCCCEEEEEeCCCcEEE---EEcC-----CCeEEEEec---cCC--ccEEEEEEcC-----------CCCEEEEE
Q 009059 268 SCHFSPDGKLLATGGHDKKAVL---WCTE-----SFTVKSTLE---EHT--QWITDVRFSP-----------SLSRLATS 323 (545)
Q Consensus 268 ~l~~spdg~~latg~~dg~I~l---wd~~-----~~~~~~~l~---~h~--~~V~~l~~sp-----------~~~~l~t~ 323 (545)
+++.+|++++||.+..+..+.+ |+.. ......... .+. ..|+++.|-| |...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4788999999999987776665 6431 112222211 121 4677776643 45789999
Q ss_pred eCCCeEEEEECCCCCeeeeEeccCcccEEEEEEe
Q 009059 324 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 357 (545)
Q Consensus 324 s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~ 357 (545)
..+|.|++|... +.. +..-.-|..+|..|.+.
T Consensus 86 ~ssG~vrfyte~-G~L-L~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTEN-GVL-LLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEecc-chH-HHHHhcCccceEEEEec
Confidence 999999999875 443 33333467778777764
No 371
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.45 E-value=0.00036 Score=44.08 Aligned_cols=37 Identities=38% Similarity=0.592 Sum_probs=33.3
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 291 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd 291 (545)
.+..+..|...|.+++|.+++.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566778999999999999999999999999999996
No 372
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.43 E-value=0.12 Score=49.06 Aligned_cols=184 Identities=12% Similarity=0.074 Sum_probs=119.7
Q ss_pred ccEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce
Q 009059 306 QWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~ 383 (545)
.-...+.|..++.++-+.+.-| .|+.+|+.+++..........----.++... +.++...-.++...+||..+.+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceE
Confidence 3456688877777777777665 7999999998763333222233334455553 45666777889999999999999
Q ss_pred eeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCC-----CCCEEEEEEcCCCCEEEEEe-CCcEEE
Q 009059 384 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-----KNQVHSVCWNTSGEYLASVS-DELVRV 457 (545)
Q Consensus 384 ~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-----~~~I~~l~~sp~g~~l~s~s-dg~I~v 457 (545)
+..+.....-..++ .++..|+.+.....|+++|.++.+....+.-. -..++-+.|- +|.+.|-.- ...|..
T Consensus 123 ~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 123 IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence 99998877767777 55678888888999999999887666555432 2256667775 566666555 778888
Q ss_pred EEcCCCCCcceEEEEee---------------CCCceEEEEEcCCCCEEEEEEcC
Q 009059 458 WSIGSGSKGECIHELSC---------------TGNKFHSCVFHPTFPSLLVIGCY 497 (545)
Q Consensus 458 wd~~~~~~~~~i~~~~~---------------~~~~v~~~~~sp~~~~l~~~~~d 497 (545)
.|..++ .++..+.. ...-.+.+++.|....|++.|..
T Consensus 200 Idp~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 200 IDPETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred EeCCCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 898887 44443321 12457899999988777766653
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.43 E-value=0.037 Score=52.08 Aligned_cols=231 Identities=12% Similarity=0.091 Sum_probs=135.7
Q ss_pred EEEEcCCC-CEEEEEeCCCc-EEEEEcCCCeEEEEeccCCcc--EEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCC
Q 009059 268 SCHFSPDG-KLLATGGHDKK-AVLWCTESFTVKSTLEEHTQW--ITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD 338 (545)
Q Consensus 268 ~l~~spdg-~~latg~~dg~-I~lwd~~~~~~~~~l~~h~~~--V~~l~~sp~~~~l~t~s~d-----g~I~vwd~~~~~ 338 (545)
.++|+|.- .-++.+-.-|+ ..++|....+...++...++. --.=.|+|||.+|+..-.| |.|-|||.+.+-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 47788844 34566655554 567888877666554321111 1123599999999887443 789999999766
Q ss_pred eeeeEeccCcccEEEEEEeCCCCcEEEEEc------C-----------CCcEEEEECCCCceeeEEecc-----CCeeEE
Q 009059 339 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD------N-----------NSEIRYWSINNGSCAGVFKCQ-----SGATQM 396 (545)
Q Consensus 339 ~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s------~-----------dg~I~lwd~~~~~~~~~~~~~-----~~v~~l 396 (545)
..+-.+..|.-....+.|.+||..+++..+ . .-.+.+.|..+++.+...... -.+..+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 556678888888888999999987765533 0 012344454555555544332 346777
Q ss_pred EEeCCCCEEEEEECCCe-----EEEEECCCCEEEEEecC-------CCCCEEEEEEcCCCCEEEEEe-C-CcEEEEEcCC
Q 009059 397 RFQPRLGRILAAAIENY-----ISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-D-ELVRVWSIGS 462 (545)
Q Consensus 397 ~~sp~~~~l~~~~~dg~-----I~i~d~~~~~~~~~~~~-------h~~~I~~l~~sp~g~~l~s~s-d-g~I~vwd~~~ 462 (545)
...+++..++.+-..|. -.+=-...++.+.-+.. ....|-+|+.+.+..+++..+ . +...+||..+
T Consensus 232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t 311 (366)
T COG3490 232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT 311 (366)
T ss_pred eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence 88887554443332221 11111122222222211 123677888887777777777 4 4889999998
Q ss_pred CCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 463 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 463 ~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
+ ..+.... -.-++-.-+...-+++.+..|.+.++.-
T Consensus 312 G---~vv~~a~----l~daaGva~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 312 G---AVVSEAA----LPDAAGVAAAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred C---cEEeccc----ccccccceeccCceEEecCCceEEeccc
Confidence 8 3332211 1112222333344788888888887743
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.063 Score=52.79 Aligned_cols=219 Identities=11% Similarity=0.106 Sum_probs=129.3
Q ss_pred EEEcCCCCE-EEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEec--
Q 009059 269 CHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-- 345 (545)
Q Consensus 269 l~~spdg~~-latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~-- 345 (545)
-.|.++... +.+--..+.|.-|+..+++.. .+. +...+.++.....+..|+++... +.+++.+++.. +..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~g--~~~~~~~~~~~-~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEHG--VRLLDPDTGGK-ITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEccc--cEEEeccCCce-eEEeccc
Confidence 346666664 444446678888888765433 222 22334555555555566665333 66677654443 12111
Q ss_pred --cC-cccEEEEEEeCCCCcEEEEEc-----C-----CCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCCEEEEEEC-
Q 009059 346 --GH-STTVMSLDFHPSKEDLLCSCD-----N-----NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI- 410 (545)
Q Consensus 346 --~h-~~~V~~l~~~p~~~~ll~s~s-----~-----dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~~~~~- 410 (545)
+. ....+.+...|+|...+-+-. . -|.|+.+|. .+..++.+.. -...+.++|+|+++.++.+..
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 11 134567788888754442222 1 133444444 3444444443 344678999999988888877
Q ss_pred CCeEEEEECCC--C----E-EEEEecCCCCCEEEEEEcCCCCEEEEEe-CC-cEEEEEcCCCCCcceEEEEeeCCCceEE
Q 009059 411 ENYISILDVET--Q----V-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTGNKFHS 481 (545)
Q Consensus 411 dg~I~i~d~~~--~----~-~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg-~I~vwd~~~~~~~~~i~~~~~~~~~v~~ 481 (545)
.+.|+.|++.. + + ....+....+..-.++...+|.+.+++. .| .|.+|+.. + +.+..+......+++
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G---~l~~~i~lP~~~~t~ 259 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G---KLLGEIKLPVKRPTN 259 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C---cEEEEEECCCCCCcc
Confidence 48899888762 1 1 1222333456667788888998886555 44 89999987 5 666666666577788
Q ss_pred EEEc-CCCCEEEEEEcC
Q 009059 482 CVFH-PTFPSLLVIGCY 497 (545)
Q Consensus 482 ~~~s-p~~~~l~~~~~d 497 (545)
++|- ++.+.|++.+..
T Consensus 260 ~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 260 PAFGGPDLNTLYITSAR 276 (307)
T ss_pred ceEeCCCcCEEEEEecC
Confidence 8874 455656655544
No 375
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.42 E-value=0.0088 Score=48.40 Aligned_cols=101 Identities=20% Similarity=0.206 Sum_probs=67.7
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 009059 266 VESCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 341 (545)
Q Consensus 266 V~~l~~sp---dg-~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~ 341 (545)
|+++++.. || +.|++|+.|..|++|+-+ +.+..+..+ +.|+++.-... ..|+.+-.+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl--- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL--- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCccee---
Confidence 56676655 33 479999999999999854 566666644 45777776655 679999999999999875432
Q ss_pred eEeccCcccEEEEEEeC---CCCcEEEEEcCCCcEE
Q 009059 342 RTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIR 374 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p---~~~~ll~s~s~dg~I~ 374 (545)
...+ .+..+.++++.. +|..-|++|-.+|.|-
T Consensus 75 WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 222366666543 4444566787788664
No 376
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.41 E-value=0.023 Score=61.22 Aligned_cols=187 Identities=12% Similarity=0.043 Sum_probs=111.1
Q ss_pred CcccEEEEEEeCCCCcEEEEEc-----CC--CcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC--------
Q 009059 347 HSTTVMSLDFHPSKEDLLCSCD-----NN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-------- 411 (545)
Q Consensus 347 h~~~V~~l~~~p~~~~ll~s~s-----~d--g~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d-------- 411 (545)
....+...+++|++..++++.. .| ..|.+++.. +.. ..+........-.|+|+++.+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEec
Confidence 3346789999999998887762 23 356666653 333 333333447889999998877776532
Q ss_pred ----CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEE---EEcCCCCCcce--EEEEee-CCCceEE
Q 009059 412 ----NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRV---WSIGSGSKGEC--IHELSC-TGNKFHS 481 (545)
Q Consensus 412 ----g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~v---wd~~~~~~~~~--i~~~~~-~~~~v~~ 481 (545)
+.+++.++..+.... .....|..+.|+|||..|+...++.|++ -....+. ... ...+.. ....+..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVS 501 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeecccCCcccc
Confidence 234334444333222 2356799999999999999888887777 3333332 011 111222 2334688
Q ss_pred EEEcCCCCEEEEEEcCC--eEEEEeCCCCeEEEecc--CCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 009059 482 CVFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCVK 542 (545)
Q Consensus 482 ~~~sp~~~~l~~~~~dg--~I~iwd~~~~~~~~~~~--h~~~V~~l~~spd~~~las~s~Dg~I~ 542 (545)
+.|..++. |+++..++ .++..++.......+.. ....+.+|+-+++ .|+....+|.+.
T Consensus 502 l~W~~~~~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 502 LDWRTGDS-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred ceEecCCE-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 99999998 45555555 34444555443322222 3566777777653 455556666544
No 377
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.37 E-value=0.00059 Score=43.03 Aligned_cols=39 Identities=41% Similarity=0.578 Sum_probs=34.5
Q ss_pred CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 295 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 295 ~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
++....+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667778999999999999999999999999999996
No 378
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.36 E-value=0.0038 Score=65.29 Aligned_cols=137 Identities=7% Similarity=0.101 Sum_probs=97.3
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce
Q 009059 304 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 304 h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~ 383 (545)
|...|.--++...+++++.|+.-|.+.+|+-..+........+-.+.+..+..+++ ++++|.|+..|.|.++-+..+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhccCC
Confidence 44455556677788999999999999999988766544444444555666666766 57888888899999998876332
Q ss_pred ee-----EE--eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCC----EEEEEecCCCCCEEEEEEc
Q 009059 384 AG-----VF--KCQSGATQMRFQPRLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWN 441 (545)
Q Consensus 384 ~~-----~~--~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~----~~~~~~~~h~~~I~~l~~s 441 (545)
.. .. .+...|++++|++++..+++|...|.|....+.+. .....+....+.|..|.+.
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 11 11 13456999999999999999999999999888772 1112223345677777654
No 379
>PRK10115 protease 2; Provisional
Probab=97.33 E-value=0.4 Score=53.03 Aligned_cols=200 Identities=9% Similarity=0.022 Sum_probs=106.5
Q ss_pred ccEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC-----CcEEE
Q 009059 306 QWITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRY 375 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~-----dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d-----g~I~l 375 (545)
-.+..+.|+||+++|+.+.. .-.|++.|+.++......+.+- -..++|.++++.++++...+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 34677889999998887643 2368889998765322333221 15699999988888775532 36888
Q ss_pred EECCCC--ceeeEEeccCC-ee-EEEEeCCCCEEEEEEC---CCeEEEEECC--CCEEEEEecCCCCCEEEEEEcCCCCE
Q 009059 376 WSINNG--SCAGVFKCQSG-AT-QMRFQPRLGRILAAAI---ENYISILDVE--TQVCRLKLQGHKNQVHSVCWNTSGEY 446 (545)
Q Consensus 376 wd~~~~--~~~~~~~~~~~-v~-~l~~sp~~~~l~~~~~---dg~I~i~d~~--~~~~~~~~~~h~~~I~~l~~sp~g~~ 446 (545)
+++.++ +....+..... .. .+..+.++.+++..+. ++.+.+++.. .+.....+....+....+. +..+.+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 899887 44444443222 22 2233447777665554 4578888853 3332222222222223332 333333
Q ss_pred EEEEe-CC-c--EEEEEcCCCCCcceEEEEeeC--CCceEEEEEcCCCCEEEEEEcCC--eEEEEeCCCCeEEEe
Q 009059 447 LASVS-DE-L--VRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTL 513 (545)
Q Consensus 447 l~s~s-dg-~--I~vwd~~~~~~~~~i~~~~~~--~~~v~~~~~sp~~~~l~~~~~dg--~I~iwd~~~~~~~~~ 513 (545)
++... +. . |...++.... ....+..+ ...+..+.+..+ ..+++...++ .+++++..++....+
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~---~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQ---QWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcc---cCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 33333 22 3 4444443211 11223233 236777777632 3344444455 566677655544443
No 380
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.0079 Score=60.98 Aligned_cols=129 Identities=12% Similarity=0.088 Sum_probs=92.8
Q ss_pred EEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCC--------EEEEEeCCcEEEEEcCCCCCcceEEEEee----
Q 009059 407 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE--------YLASVSDELVRVWSIGSGSKGECIHELSC---- 474 (545)
Q Consensus 407 ~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~--------~l~s~sdg~I~vwd~~~~~~~~~i~~~~~---- 474 (545)
.+.....|+-.|++.|+.+..+.-+.. |+-+.+.|+.+ .|+.-++..|.-||.+-... ..+.....
T Consensus 351 ~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 351 DGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-NKLAVVQSKQYS 428 (644)
T ss_pred CCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-ceeeeeeccccc
Confidence 344567899999999999999887766 77777777653 45555688999999885433 12222222
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 475 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 475 ~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
....+.|.+-..+| +|++|+.+|.|++||--...-. .+.+...+|..|..+.+|++|+..+..
T Consensus 429 ~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 429 TKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred cccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 23445666666565 5999999999999998333222 677888999999999999988776644
No 381
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.23 E-value=0.078 Score=48.56 Aligned_cols=206 Identities=12% Similarity=0.118 Sum_probs=111.7
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeC-CCC-cEEEEEcCCCcEEEEECCC--CceeeEE------
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKE-DLLCSCDNNSEIRYWSINN--GSCAGVF------ 387 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p-~~~-~ll~s~s~dg~I~lwd~~~--~~~~~~~------ 387 (545)
.++.+--..|.|+-||+...+.....+.+. ++.++.+-- ++. .+.+.++..-.|--||-.. ....+++
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 344444456677779888765433333322 133333321 222 3344444444455577332 2222221
Q ss_pred eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCC--------CCEEEEEEcCCCCEEEEEe--CCcEEE
Q 009059 388 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK--------NQVHSVCWNTSGEYLASVS--DELVRV 457 (545)
Q Consensus 388 ~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~--------~~I~~l~~sp~g~~l~s~s--dg~I~v 457 (545)
......+.-..+|+|++ +.|.....-..+....+....-+.+|. .--+.++|+.+.+.+.... +-.|.-
T Consensus 106 ~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred HHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 11234566778899776 555532111122222333333333332 2335788988877766655 557777
Q ss_pred EE--cCCCCC--cceEEEEeeC----CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEe
Q 009059 458 WS--IGSGSK--GECIHELSCT----GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 526 (545)
Q Consensus 458 wd--~~~~~~--~~~i~~~~~~----~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s 526 (545)
|| ..++.. ...+..++.. .-..-.+++..+|...+++-..++|..+|..+++.+ ++.-....|++++|-
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 88 555432 2333333321 112234555678887777777789999999999988 565567889999996
No 382
>PHA02713 hypothetical protein; Provisional
Probab=97.21 E-value=0.044 Score=59.05 Aligned_cols=215 Identities=8% Similarity=0.024 Sum_probs=107.1
Q ss_pred cEEEEEcCCCeEE--EEeccCCccEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCCeeeeEecc--CcccEEEEE
Q 009059 286 KAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYSLRTFTG--HSTTVMSLD 355 (545)
Q Consensus 286 ~I~lwd~~~~~~~--~~l~~h~~~V~~l~~sp~~~~l~t~s~d------g~I~vwd~~~~~~~~~~~~~--h~~~V~~l~ 355 (545)
.+..||..+.+-. ..+...... .+++. -++.+++.|+.+ ..+..||..+... ..... ....-.+++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W--~~~~~m~~~R~~~~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIH--VELPPMIKNRCRFSLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeE--eeCCCCcchhhceeEE
Confidence 5677887765422 122111111 12222 256777777754 3477888876543 11111 111111222
Q ss_pred EeCCCCcEEEEEcCCC-----cEEEEECCCCceeeEEeccCCe--eEEEEeCCCCEEEEEECC-----------------
Q 009059 356 FHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAIE----------------- 411 (545)
Q Consensus 356 ~~p~~~~ll~s~s~dg-----~I~lwd~~~~~~~~~~~~~~~v--~~l~~sp~~~~l~~~~~d----------------- 411 (545)
.. ++.+.+.|+.++ .+..||..+.+....-...... .+++ .-++..+++|+.+
T Consensus 349 ~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 349 VI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred EE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCccccccccccccccccc
Confidence 22 245666777654 4788998876543322222211 1111 2244555566543
Q ss_pred ------CeEEEEECCCCEEE--EEecCCCCCEEEEEEcCCCCEEEEEe-CC------cEEEEEcCCCCCcceEEEEeeCC
Q 009059 412 ------NYISILDVETQVCR--LKLQGHKNQVHSVCWNTSGEYLASVS-DE------LVRVWSIGSGSKGECIHELSCTG 476 (545)
Q Consensus 412 ------g~I~i~d~~~~~~~--~~~~~h~~~I~~l~~sp~g~~l~s~s-dg------~I~vwd~~~~~~~~~i~~~~~~~ 476 (545)
..+..||.++.+-. ..+...... .+++. -++++.+.|+ ++ .+..||..+......+..+....
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCccccc-CcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 24778888776432 222111111 12222 2466666665 32 46788887622233344333322
Q ss_pred CceEEEEEcCCCCEEEEEEcCC--eEEEEeCCCCeEE
Q 009059 477 NKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTL 511 (545)
Q Consensus 477 ~~v~~~~~sp~~~~l~~~~~dg--~I~iwd~~~~~~~ 511 (545)
.....+++ +++..++||.++ .+..||..+++..
T Consensus 504 ~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 504 SALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred ccceeEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence 22222222 677778888887 7889999888766
No 383
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.21 E-value=0.18 Score=48.44 Aligned_cols=185 Identities=9% Similarity=0.018 Sum_probs=104.9
Q ss_pred cEEEEEEeCCCCcEEEEE--cCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEE-CCCCEE-E
Q 009059 350 TVMSLDFHPSKEDLLCSC--DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD-VETQVC-R 425 (545)
Q Consensus 350 ~V~~l~~~p~~~~ll~s~--s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d-~~~~~~-~ 425 (545)
.+.+.++++++..+.+.. .....++++.. +...........+....|++++...++...+....++. ..++.. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 688999999998887766 33445555544 33333332334788889999955555555566656663 333322 1
Q ss_pred EEecC--CCCCEEEEEEcCCCCEEEEEe----CCcEEEEEcCCCCCc------ceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 426 LKLQG--HKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 426 ~~~~~--h~~~I~~l~~sp~g~~l~s~s----dg~I~vwd~~~~~~~------~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
..+.. ....|..+.++|||..++... ++.|.+--+...... ..+.........+..+.|.+++.+++.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 11221 122899999999999888766 557777765433222 111222233567899999999987776
Q ss_pred EEcCCe-EEE-EeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEe
Q 009059 494 IGCYET-LEL-WNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 494 ~~~dg~-I~i-wd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s 536 (545)
+...+. +.. +....+....+..-...+..++...+...++..+
T Consensus 183 ~~~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t~ 227 (253)
T PF10647_consen 183 GRSAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVTD 227 (253)
T ss_pred eCCCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEEC
Confidence 666552 333 4444443333322222233333333333444333
No 384
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.19 E-value=0.033 Score=59.88 Aligned_cols=231 Identities=11% Similarity=0.075 Sum_probs=120.4
Q ss_pred cCCCCEEEEEeCC------CcEEEEEcCCCeEEE--EeccCCccEEEEEEcCCCCEEEEEeCC------CeEEEEECCCC
Q 009059 272 SPDGKLLATGGHD------KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENP 337 (545)
Q Consensus 272 spdg~~latg~~d------g~I~lwd~~~~~~~~--~l~~h~~~V~~l~~sp~~~~l~t~s~d------g~I~vwd~~~~ 337 (545)
+..+.+++.||.+ ..+..||..+.+-.. .+. +...-.++++. ++...++|+.| .++..||....
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence 3345677777776 367788887753332 222 22223344444 45788888888 35677887766
Q ss_pred CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC-----cEEEEECCCCceeeEEeccCCeeEEEEe-CCCCEEEEEECC
Q 009059 338 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSGATQMRFQ-PRLGRILAAAIE 411 (545)
Q Consensus 338 ~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg-----~I~lwd~~~~~~~~~~~~~~~v~~l~~s-p~~~~l~~~~~d 411 (545)
... ....-...-..+....-++.+.++|+.|| .|-.||..+.+....-............ -++..+++|+.+
T Consensus 360 ~W~--~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~ 437 (571)
T KOG4441|consen 360 QWT--PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGD 437 (571)
T ss_pred cee--ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcC
Confidence 542 12111111111112222356788888886 3667887765543333222222222222 244555666644
Q ss_pred C------eEEEEECCCCEEE--EEecCCCCCEEEEEEcCCCCEEEEEe-CC-----cEEEEEcCCCCCcceEEEEeeCCC
Q 009059 412 N------YISILDVETQVCR--LKLQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGN 477 (545)
Q Consensus 412 g------~I~i~d~~~~~~~--~~~~~h~~~I~~l~~sp~g~~l~s~s-dg-----~I~vwd~~~~~~~~~i~~~~~~~~ 477 (545)
+ .+..||..+..-. ..+........ ++. -++.+.+.|+ |+ +|..||..+.+- ..+..+.....
T Consensus 438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W-~~v~~m~~~rs 514 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQW-TMVAPMTSPRS 514 (571)
T ss_pred CCccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCce-eEcccCccccc
Confidence 3 5788998876433 22222222222 332 2566666666 65 477888876521 22221221222
Q ss_pred ceEEEEEcCCCCEEEEEEcCC-----eEEEEeCCCCeEE
Q 009059 478 KFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTL 511 (545)
Q Consensus 478 ~v~~~~~sp~~~~l~~~~~dg-----~I~iwd~~~~~~~ 511 (545)
.+.. ..-++...++|+.++ +|..||..+++..
T Consensus 515 ~~g~--~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 515 AVGV--VVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred cccE--EEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 2221 222455667777766 7888888777665
No 385
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.16 E-value=0.38 Score=49.31 Aligned_cols=260 Identities=13% Similarity=0.114 Sum_probs=142.5
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCe-----EEEEeccCCccEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCC--C---
Q 009059 274 DGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENP--D--- 338 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~-----~~~~l~~h~~~V~~l~~sp-----~~~~l~t~s~dg~I~vwd~~~~--~--- 338 (545)
+...|++|+..|.++||+..... ++.+ ..-..+|..|+.-. +...||+ -.-..+.||.+... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34589999999999999975432 1111 12456788877642 2234444 45667888877321 1
Q ss_pred ---eeeeEeccCc--ccEEEEEEeC----CCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEE
Q 009059 339 ---YSLRTFTGHS--TTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 409 (545)
Q Consensus 339 ---~~~~~~~~h~--~~V~~l~~~p----~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~ 409 (545)
..+.....|. .....+++-| .+..+++.-+.||.+.+|+-+.......+...--...+.|.+....|++++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEec
Confidence 2223333332 2334444433 235788899999999999976544444443323345678888888899999
Q ss_pred CCCeEEEEECCCCE--------------------E---EEEecCCCCCEEEE---EEcCCCCEEEEEeCCcEEEEEcCCC
Q 009059 410 IENYISILDVETQV--------------------C---RLKLQGHKNQVHSV---CWNTSGEYLASVSDELVRVWSIGSG 463 (545)
Q Consensus 410 ~dg~I~i~d~~~~~--------------------~---~~~~~~h~~~I~~l---~~sp~g~~l~s~sdg~I~vwd~~~~ 463 (545)
.+..|..|....-. . -.++. -...+..| .++.....+++-++..+.+.+-. |
T Consensus 194 ss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G 271 (418)
T PF14727_consen 194 SSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G 271 (418)
T ss_pred CceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C
Confidence 99998888653110 0 00111 11233333 33334445555556666666653 2
Q ss_pred CCcceEEEEeeCCCceEEE-EE----cCCC---CEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEE---EeCCCCEE
Q 009059 464 SKGECIHELSCTGNKFHSC-VF----HPTF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLA---ASTVNGMV 532 (545)
Q Consensus 464 ~~~~~i~~~~~~~~~v~~~-~~----sp~~---~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~---~spd~~~l 532 (545)
.......+ .....++ .| ...+ ..+++++.++.+.||.=.+.....-..| .+ .+|. |..-...|
T Consensus 272 -~l~~~krL---d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~~-~P-Val~v~~~~~~~G~I 345 (418)
T PF14727_consen 272 -SLRFQKRL---DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLPH-VP-VALSVANFNGLKGLI 345 (418)
T ss_pred -eEEEEEec---CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCCC-CC-EEEEecccCCCCceE
Confidence 11222222 2222222 12 1122 2488999999999996433322211122 22 2333 22335688
Q ss_pred EEEeCCCcEEE
Q 009059 533 ASASHDKCVKI 543 (545)
Q Consensus 533 as~s~Dg~I~i 543 (545)
++-+.+|.+.+
T Consensus 346 V~Ls~~G~L~v 356 (418)
T PF14727_consen 346 VSLSDEGQLSV 356 (418)
T ss_pred EEEcCCCcEEE
Confidence 88888998865
No 386
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0022 Score=66.18 Aligned_cols=92 Identities=17% Similarity=0.242 Sum_probs=75.5
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEE-EEEEeCCCCcEEEEEcCCCcEEEEECCCCcee
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 384 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~-~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~ 384 (545)
-.|.-+.|+|.-.+||++..+|.|.+..+. .. .+.++.-|...++ +++|.||| .+++.|-.||+|++.|+.++..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~q-Rlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQ-RLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cc-eeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCCce
Confidence 457889999999999999999999999888 33 3667776666777 99999996 57779999999999999999887
Q ss_pred eE--EeccCCeeEEEEeC
Q 009059 385 GV--FKCQSGATQMRFQP 400 (545)
Q Consensus 385 ~~--~~~~~~v~~l~~sp 400 (545)
.. +.....+.++.|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 76 45556677777764
No 387
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.08 E-value=0.033 Score=59.88 Aligned_cols=218 Identities=11% Similarity=0.062 Sum_probs=115.8
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC------CcEEEEECCCCce
Q 009059 316 SLSRLATSSAD------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSC 383 (545)
Q Consensus 316 ~~~~l~t~s~d------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d------g~I~lwd~~~~~~ 383 (545)
.+.+++.|+.+ ..+..+|..++......-......-.++++.. +.++++|+.| ..+..||..+.+.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCce
Confidence 35566777666 36778888876442222122333445566654 3677788888 3577888887764
Q ss_pred eeEEeccCCeeEEEEe-CCCCEEEEEECCC-----eEEEEECCCCEEEE--EecCCCCCEEEEEEcCCCCEEEEEe-CC-
Q 009059 384 AGVFKCQSGATQMRFQ-PRLGRILAAAIEN-----YISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-DE- 453 (545)
Q Consensus 384 ~~~~~~~~~v~~l~~s-p~~~~l~~~~~dg-----~I~i~d~~~~~~~~--~~~~h~~~I~~l~~sp~g~~l~s~s-dg- 453 (545)
...-.....-...... -+|..+++|+.|| .+..||.++.+-.. .+.......-.+. -+|++.++|+ ++
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGS 439 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCC
Confidence 4422222222222222 2445666777776 58888887654322 2221111111122 2577667666 44
Q ss_pred -----cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC-----eEEEEeCCCCeEEEeccCCCCeeEE
Q 009059 454 -----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHDKLVSSL 523 (545)
Q Consensus 454 -----~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-----~I~iwd~~~~~~~~~~~h~~~V~~l 523 (545)
.+..||..+..- ..+..+........ ...-++...++||.++ +|..||..+.+...+..-......+
T Consensus 440 ~~~l~sve~YDP~t~~W-~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTW-TLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV 516 (571)
T ss_pred ccccceEEEEcCCCCce-eecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence 577888776521 22222221111111 2233556667777665 5888999988877443222222222
Q ss_pred EE-eCCCCEEEEEeCCCc
Q 009059 524 AA-STVNGMVASASHDKC 540 (545)
Q Consensus 524 ~~-spd~~~las~s~Dg~ 540 (545)
.. .-++.+.++|+.||.
T Consensus 517 g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 517 GVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred cEEEECCEEEEEecccCc
Confidence 11 224677788888864
No 388
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.06 E-value=0.1 Score=54.07 Aligned_cols=145 Identities=12% Similarity=0.142 Sum_probs=90.9
Q ss_pred CCCeEEEEEcCC----C-CEEEEEeCCCcEEEEEcC-----CCeEEEEec-cCCc----cEEEEEEcCCCCEEEEEeCCC
Q 009059 263 TSKVESCHFSPD----G-KLLATGGHDKKAVLWCTE-----SFTVKSTLE-EHTQ----WITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 263 ~~~V~~l~~spd----g-~~latg~~dg~I~lwd~~-----~~~~~~~l~-~h~~----~V~~l~~sp~~~~l~t~s~dg 327 (545)
-..|..++|.|- . .+||+ -..+.|.||.+. ..+.+..-. .... --..+.|+|....|++-....
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred cceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 345889999994 3 35554 567899999874 223222111 1111 123467999988888776665
Q ss_pred eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce-----eeEEeccCCeeEEEEeCCC
Q 009059 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-----AGVFKCQSGATQMRFQPRL 402 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~-----~~~~~~~~~v~~l~~sp~~ 402 (545)
.-.++++......++.-....+.|.|.+|.+||..++++.+..=.-++||-..... ...|...+.|.++.-.-+
T Consensus 135 vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d- 213 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD- 213 (671)
T ss_pred eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc-
Confidence 55666666544444444456788999999999999988777677788998654321 223444555666655554
Q ss_pred CEEEEEE
Q 009059 403 GRILAAA 409 (545)
Q Consensus 403 ~~l~~~~ 409 (545)
..+++++
T Consensus 214 sqVAvaT 220 (671)
T PF15390_consen 214 SQVAVAT 220 (671)
T ss_pred ceEEEEe
Confidence 4455544
No 389
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.03 E-value=0.18 Score=49.37 Aligned_cols=203 Identities=14% Similarity=0.149 Sum_probs=96.8
Q ss_pred CceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE-EEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 009059 249 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 249 ~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~-~~l~~h~~~V~~l~~sp~~~~l~t~s~dg 327 (545)
.|..+..+..-..-.+....+....++..++ ++..|.|+.= .+.++.- .....-...+..+..+++|++++++....
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~ 166 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGN 166 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSS
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECccc
Confidence 3455555432222222333344434443333 3344543332 1223222 22344557789999999999999987777
Q ss_pred eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEEC-CCCceeeE--E---eccCCeeEEEEeCC
Q 009059 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NNGSCAGV--F---KCQSGATQMRFQPR 401 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~-~~~~~~~~--~---~~~~~v~~l~~sp~ 401 (545)
...-||-..... ...-..-...|..|.|.|++. +.+.+ ..|.|++=+. ...+.-.. . ...-.+..++|.++
T Consensus 167 ~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~-lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 167 FYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGN-LWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp EEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS--EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred EEEEecCCCccc-eEEccCccceehhceecCCCC-EEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 777888764433 222233567899999999964 44333 7888888772 22221111 1 11223788999988
Q ss_pred CCEEEEEECCCeEEEEECCCCEEEEE---ecCCCCCEEEEEEcCCCCEEEEEeCCcEEEE
Q 009059 402 LGRILAAAIENYISILDVETQVCRLK---LQGHKNQVHSVCWNTSGEYLASVSDELVRVW 458 (545)
Q Consensus 402 ~~~l~~~~~dg~I~i~d~~~~~~~~~---~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vw 458 (545)
+.+.+++..|.+.+ ....++.-.. ...-...++.|.|.++.+-++.|.+|.|.-|
T Consensus 244 -~~~wa~gg~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 244 -NEIWAVGGSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp -S-EEEEESTT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred -CCEEEEeCCccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 55555666665443 3333332222 2233457889999888888999999977655
No 390
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.02 E-value=0.24 Score=47.16 Aligned_cols=191 Identities=14% Similarity=0.156 Sum_probs=118.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc-CCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 009059 259 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 337 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~-h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~ 337 (545)
+.+-...|.++.|+|+.+.|++......-.||=...|+.+.++.- .-.....|.|..++.+.++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 344455599999999999998888888888888788999887742 1223456788878887777777888888877654
Q ss_pred Cee---------eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE---e--------ccCCeeEEE
Q 009059 338 DYS---------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---K--------CQSGATQMR 397 (545)
Q Consensus 338 ~~~---------~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~---~--------~~~~v~~l~ 397 (545)
... +............++|.|....++ .+-+-.-+.+|.+......... . .-..+..+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~-~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF-VAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEE-EEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 321 112222255678999999987777 4444555666665533211000 0 013467788
Q ss_pred EeCCCCEEEEEE-CCCeEEEEECCCCEEEEEecCCC---------CCEEEEEEcCCCCEEEEEe
Q 009059 398 FQPRLGRILAAA-IENYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 398 ~sp~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~---------~~I~~l~~sp~g~~l~s~s 451 (545)
|++..+.+++-+ .++.|.-.|..... +..+.-+. ...-.|+..++|.+.+++.
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~~-~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE 302 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGEV-IELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE 302 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCCe-eeeEEeccCCCCCcccCCCcceeEECCCCCEEEEec
Confidence 888666666555 46677777766442 32222111 1234566666665555444
No 391
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.00 E-value=0.11 Score=47.57 Aligned_cols=163 Identities=15% Similarity=0.136 Sum_probs=103.3
Q ss_pred EEEEEeCCCcEEEEEc--CCCeEEEEecc-----CCccEEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCCee
Q 009059 277 LLATGGHDKKAVLWCT--ESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSA---------DRTVRVWDTENPDYS 340 (545)
Q Consensus 277 ~latg~~dg~I~lwd~--~~~~~~~~l~~-----h~~~V~~l~~sp~~~~l~t~s~---------dg~I~vwd~~~~~~~ 340 (545)
+.+.++..-.|.=||. +.....+++.. ...+.++-..+|+|++++-.-. .|.++.|-....
T Consensus 73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--- 149 (310)
T KOG4499|consen 73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--- 149 (310)
T ss_pred EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC---
Confidence 4444444444555773 33334444321 2345666778899998443222 245555554321
Q ss_pred eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEE--CCCCce-----eeEEecc-----CCeeEEEEeCCCCEEEEE
Q 009059 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS--INNGSC-----AGVFKCQ-----SGATQMRFQPRLGRILAA 408 (545)
Q Consensus 341 ~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd--~~~~~~-----~~~~~~~-----~~v~~l~~sp~~~~l~~~ 408 (545)
+..+...-.--+.++|+.+.+.+.++-+.+-+|.-|| ..+|.. +..++.. -..-.+++..+|+.++++
T Consensus 150 v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~ 229 (310)
T KOG4499|consen 150 VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT 229 (310)
T ss_pred ceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE
Confidence 2233333344567899988777888888888998887 555432 2222211 113456667787888888
Q ss_pred ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcC
Q 009059 409 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 442 (545)
Q Consensus 409 ~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp 442 (545)
-..++|..+|..+++.+.++.-....|+|+||--
T Consensus 230 ~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 8899999999999999999998899999999964
No 392
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.00 E-value=0.00092 Score=60.67 Aligned_cols=141 Identities=13% Similarity=0.049 Sum_probs=81.8
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee-eEEe-ccCCeeEE
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFK-CQSGATQM 396 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~-~~~~-~~~~v~~l 396 (545)
.|..-+.||.|+-+++...+...+.-..|...-.-+.+ ..-++.|..+|.|++|+..-.... ..+. ....+.++
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~----~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA----SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeeccc----CceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 34445678888888776544333332323322111222 233558888999999988722111 1111 11222222
Q ss_pred -EEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCC-CCEEEEEEcCCCCEEEEE--e-CCcEEEEEcCCC
Q 009059 397 -RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-NQVHSVCWNTSGEYLASV--S-DELVRVWSIGSG 463 (545)
Q Consensus 397 -~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-~~I~~l~~sp~g~~l~s~--s-dg~I~vwd~~~~ 463 (545)
....++.+..+++.+|.|+.|++.-.+.+-....|. .++..+..+..+++|+.. + |..++.|++...
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 222344577788899999999999887776666676 555555555666666666 4 667777777543
No 393
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.99 E-value=0.47 Score=47.55 Aligned_cols=233 Identities=13% Similarity=0.147 Sum_probs=118.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE---EEEe----ccCCccEEEEEEcCC---CCEEEEEeC-C-------
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTL----EEHTQWITDVRFSPS---LSRLATSSA-D------- 326 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~---~~~l----~~h~~~V~~l~~sp~---~~~l~t~s~-d------- 326 (545)
..+.|+|.|||++|++ ...|.|++++ ..+.. +..+ .........++|+|+ ..+|+.... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999988775 5699999999 44443 2222 234567899999994 334443332 1
Q ss_pred -CeEEEEECCCC-------CeeeeEecc---CcccEEEEEEeCCCCcEEEEEcCC------------CcEEEEECCCCce
Q 009059 327 -RTVRVWDTENP-------DYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNN------------SEIRYWSINNGSC 383 (545)
Q Consensus 327 -g~I~vwd~~~~-------~~~~~~~~~---h~~~V~~l~~~p~~~~ll~s~s~d------------g~I~lwd~~~~~~ 383 (545)
..|.-|.+... +..+..+.. ....-..|.|.|++..++.+|+.. |.|.-.+.. +..
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence 23444444433 111122222 223456799999984444333321 233333332 110
Q ss_pred -------------eeEEe-ccCCeeEEEEeCCCCEEEEEEC--CC--eEEEEECC--------C------C---------
Q 009059 384 -------------AGVFK-CQSGATQMRFQPRLGRILAAAI--EN--YISILDVE--------T------Q--------- 422 (545)
Q Consensus 384 -------------~~~~~-~~~~v~~l~~sp~~~~l~~~~~--dg--~I~i~d~~--------~------~--------- 422 (545)
...+. .......++|+|..+.|+++.. ++ .|.+.... . +
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 01111 1123567999998566666543 22 23332110 0 0
Q ss_pred ----EEEEEecCCCCCEEEEEEcC-------CCCEEEEEe-CCcEEEEEcCCCCCcceEEEE-eeCCCceEEEEEcCCCC
Q 009059 423 ----VCRLKLQGHKNQVHSVCWNT-------SGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFP 489 (545)
Q Consensus 423 ----~~~~~~~~h~~~I~~l~~sp-------~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~-~~~~~~v~~~~~sp~~~ 489 (545)
.++..+.. ...+..+.|.. .|.++++.. .+.|....+...........+ ......+..+++.|||.
T Consensus 240 ~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 240 PGFVPPVFAYPP-HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA 318 (331)
T ss_dssp TTS---SEEETT-T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE
T ss_pred CCcCccceeecC-ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe
Confidence 12333433 35667777754 345666655 568888887644221222222 23344789999999998
Q ss_pred EEEEEEcCCeEE
Q 009059 490 SLLVIGCYETLE 501 (545)
Q Consensus 490 ~l~~~~~dg~I~ 501 (545)
.+++...+|.|+
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 777777777764
No 394
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.96 E-value=0.36 Score=45.80 Aligned_cols=179 Identities=9% Similarity=0.019 Sum_probs=109.0
Q ss_pred cEEEEEEeCCCCcEEEEEcCCC--cEEEEECCCCceeeEEeccCCe--eEEEEeCCCCEEEEEE-CCCeEEEEECCCCEE
Q 009059 350 TVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAA-IENYISILDVETQVC 424 (545)
Q Consensus 350 ~V~~l~~~p~~~~ll~s~s~dg--~I~lwd~~~~~~~~~~~~~~~v--~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~ 424 (545)
-...+.|..++ .++-+.+.-| .|+.+|+.+++.......+... ..++... +.++--+ .++...+||..+.+.
T Consensus 46 FTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 46 FTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEE
T ss_pred cCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceE
Confidence 35577885554 5666766555 7999999999988877766653 3344443 4555555 489999999999988
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCC---ceEEEEEcCCCCEEEEEEcCCeE
Q 009059 425 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN---KFHSCVFHPTFPSLLVIGCYETL 500 (545)
Q Consensus 425 ~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~---~v~~~~~sp~~~~l~~~~~dg~I 500 (545)
+.++. ..+.=..++ .++..|+... ...++++|..+.+....+... .... .++-+.|. +|...+=.-....|
T Consensus 123 ~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-~~g~pv~~LNELE~i-~G~IyANVW~td~I 197 (264)
T PF05096_consen 123 IGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT-DNGRPVSNLNELEYI-NGKIYANVWQTDRI 197 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E-ETTEE---EEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE-ECCEECCCcEeEEEE-cCEEEEEeCCCCeE
Confidence 88876 345567777 3455555444 778999998776432222221 2222 34455665 45444444455688
Q ss_pred EEEeCCCCeEEEec------c-------C---CCCeeEEEEeCCCCEEEEEe
Q 009059 501 ELWNMTENKTLTLS------A-------H---DKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 501 ~iwd~~~~~~~~~~------~-------h---~~~V~~l~~spd~~~las~s 536 (545)
...|..+|++.... . + ..-.+.||+.|..+.|...|
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 88999999887321 0 1 34689999998876554444
No 395
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.96 E-value=0.079 Score=42.97 Aligned_cols=100 Identities=20% Similarity=0.184 Sum_probs=69.6
Q ss_pred EEEEEE---eCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEE
Q 009059 351 VMSLDF---HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 427 (545)
Q Consensus 351 V~~l~~---~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~ 427 (545)
|+++++ ..+|..-|++|+.|..|++|+- .+.+..+.....++.++-... +.++.+..+|+|-+|+-.. .+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeee
Confidence 455554 4456677779999999999974 477888888888999988877 7899999999999998643 2333
Q ss_pred ecCCCCCEEEEEEcC-C--C-CEEEEEe-CCcEE
Q 009059 428 LQGHKNQVHSVCWNT-S--G-EYLASVS-DELVR 456 (545)
Q Consensus 428 ~~~h~~~I~~l~~sp-~--g-~~l~s~s-dg~I~ 456 (545)
.+. +..+.++++.. + | .-|++|- +|.|-
T Consensus 77 iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 332 33466666543 2 2 2455554 77654
No 396
>PRK13684 Ycf48-like protein; Provisional
Probab=96.89 E-value=0.57 Score=46.95 Aligned_cols=270 Identities=7% Similarity=0.004 Sum_probs=133.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe----ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l----~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
...+++|+|..+.+-+|+|. ++.|.. ..+.|+.-... ......+.++.|.++ ..++++ ..+. ||..+++.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~-T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~G-~~g~--i~~S~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLE-TNDGGETWEERSLDLPEENFRLISISFKGD-EGWIVG-QPSL--LLHTTDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEE-EcCCCCCceECccCCcccccceeeeEEcCC-cEEEeC-CCce--EEEECCCC
Confidence 45788999986666666664 454332 11222222211 112344778888643 344443 4443 33333332
Q ss_pred eeeeEec---cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 339 YSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 339 ~~~~~~~---~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
....... ........+..... ..+++.+ ..|.|.. ..+.++.-..+. ....+..+.+.+++ .+++.+..|.
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~-~~~~~~g-~~G~i~~-S~DgG~tW~~~~~~~~g~~~~i~~~~~g-~~v~~g~~G~ 194 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGP-GTAEMAT-NVGAIYR-TTDGGKNWEALVEDAAGVVRNLRRSPDG-KYVAVSSRGN 194 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECC-Ccceeee-ccceEEE-ECCCCCCceeCcCCCcceEEEEEECCCC-eEEEEeCCce
Confidence 2222221 01112222222222 2233333 3443432 222222222111 13457788888874 5556666676
Q ss_pred EEEE-ECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEE-eeCCCceEEEEEcCCCCEE
Q 009059 414 ISIL-DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSL 491 (545)
Q Consensus 414 I~i~-d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~-~~~~~~v~~~~~sp~~~~l 491 (545)
+..- |-....-..........++++.+.+++..++++..|.+++=....+.....+..- ......+..+.+.+++. +
T Consensus 195 i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~ 273 (334)
T PRK13684 195 FYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE-I 273 (334)
T ss_pred EEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-E
Confidence 5543 2221111122223456889999999999888887876653233444322221111 01224578889998776 5
Q ss_pred EEEEcCCeEEEEeCCCCeEE-Ee---ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 492 LVIGCYETLELWNMTENKTL-TL---SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 492 ~~~~~dg~I~iwd~~~~~~~-~~---~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++++.+|.|.. ....++.- .. ..-....+.+.|..+++.++ .+..|.|.-|+
T Consensus 274 ~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 274 WAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred EEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 66667776653 44444433 22 12224577888876666655 45678776653
No 397
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.019 Score=58.28 Aligned_cols=142 Identities=9% Similarity=0.109 Sum_probs=98.0
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCc-------EEEEEcCCCcEEEEECCCCce--ee
Q 009059 316 SLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-------LLCSCDNNSEIRYWSINNGSC--AG 385 (545)
Q Consensus 316 ~~~~l~-t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~-------ll~s~s~dg~I~lwd~~~~~~--~~ 385 (545)
+.++|+ ++.....++-.|++.++. +..+.-+.. |.-+.+.|+.+. -| .|-.+..|.-||.+-... +.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKI-VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKI-VEEWKFEDD-INMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred ccceEeeCCCCcCcceeeeccccee-eeEeeccCC-cceeeccCCcchhcccccccE-EeecCCceEEecccccCcceee
Confidence 334443 444556688888988875 777776665 777777776421 23 455578899999873221 11
Q ss_pred -----EEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEc
Q 009059 386 -----VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSI 460 (545)
Q Consensus 386 -----~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~ 460 (545)
.+.......|.+-..+ +++++|+.+|.|++||--.......+.+-..+|..|..+.+|++|++.++..+.+.++
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred eeeccccccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 1122233445555444 8999999999999999844444556777889999999999999999999988888776
Q ss_pred C
Q 009059 461 G 461 (545)
Q Consensus 461 ~ 461 (545)
.
T Consensus 500 ~ 500 (644)
T KOG2395|consen 500 L 500 (644)
T ss_pred e
Confidence 4
No 398
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.56 Score=44.66 Aligned_cols=270 Identities=10% Similarity=0.047 Sum_probs=145.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec--cCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 341 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~--~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~ 341 (545)
+-+..+.++ +++...+..+.-++|.|+.+-.....+. ...+.-.++.. .|++...+..|.-+.+.|+.+...+.
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 345667776 4466777778889999987643322221 12233445555 57888888877778889998776543
Q ss_pred e--EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc---eeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEE
Q 009059 342 R--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 416 (545)
Q Consensus 342 ~--~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~---~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i 416 (545)
. .+.........++.+ |+ ..+.+..|+-+.+.|+.+.. .+........+..+..+++ +.+..-.+-.+.+
T Consensus 163 lagrya~~~~d~~~v~IS--Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vvy~egvli 237 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVVYDEGVLI 237 (370)
T ss_pred eeeeeccCCCCceeEEEe--cC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC--eeEEEEcccceEE
Confidence 2 333344445677777 33 34455668889999997643 3333444446777777665 4444444555677
Q ss_pred EECCCCEEEEEecC-CCCCEEEE-EEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 417 LDVETQVCRLKLQG-HKNQVHSV-CWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 417 ~d~~~~~~~~~~~~-h~~~I~~l-~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
.|..+.+....+.. ....+.++ .+.-.+++..... +.-+.+-|+.+.........+...+..-..+... +.++..
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yi 315 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYI 315 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEe
Confidence 77776553333221 12222222 2223455555555 5566677776543322222222222122222222 222333
Q ss_pred EEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 494 IGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 494 ~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+..+ ...+.|....+.. ...+....+.+.+.+-+.+++.+...++-+.||+
T Consensus 316 adkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 316 ADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred ccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 3333 3344444333322 1222223344445555566888999999999985
No 399
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.084 Score=49.79 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=103.9
Q ss_pred CceeeEEeccCCeeEEEEeCCCCEEEE-EECCC-eEEEEECCCCEEEEEecCCCC--CEEEEEEcCCCCEEEEEe-----
Q 009059 381 GSCAGVFKCQSGATQMRFQPRLGRILA-AAIEN-YISILDVETQVCRLKLQGHKN--QVHSVCWNTSGEYLASVS----- 451 (545)
Q Consensus 381 ~~~~~~~~~~~~v~~l~~sp~~~~l~~-~~~dg-~I~i~d~~~~~~~~~~~~h~~--~I~~l~~sp~g~~l~s~s----- 451 (545)
++++...........+.|+|....-++ +-.-| ...+||.........+...++ ..-.=+|+|||.+|+...
T Consensus 58 Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~ 137 (366)
T COG3490 58 GKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDP 137 (366)
T ss_pred CceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCC
Confidence 455555666666777888886555333 33444 577899888765554432222 112246999999999875
Q ss_pred -CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC------------------CeEEEEeCCCCeEE-
Q 009059 452 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY------------------ETLELWNMTENKTL- 511 (545)
Q Consensus 452 -dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d------------------g~I~iwd~~~~~~~- 511 (545)
.|.|-|||.+.+ ...+.++..|.-....+.|.+||+.++++... -++.+.|..++.++
T Consensus 138 ~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie 215 (366)
T COG3490 138 NRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE 215 (366)
T ss_pred CCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh
Confidence 248999999843 46788888899899999999999988776541 13445555555554
Q ss_pred --Eec--cCCCCeeEEEEeCCCCEEEEEeC
Q 009059 512 --TLS--AHDKLVSSLAASTVNGMVASASH 537 (545)
Q Consensus 512 --~~~--~h~~~V~~l~~spd~~~las~s~ 537 (545)
++. .+.-.|..++..+||..++.+-+
T Consensus 216 kh~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 216 KHTLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred hccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 233 35567888998888876665543
No 400
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.039 Score=60.73 Aligned_cols=101 Identities=21% Similarity=0.272 Sum_probs=71.9
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC-eEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEE
Q 009059 274 DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 352 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~-~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~ 352 (545)
-+.+++.|+..|.|...|.... .....=+.-.++|++++|+.+|+.++.|-.+|.|.+||+..++. ++.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~-l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI-LKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc-eeeeeecCCccc
Confidence 3557888998899988887542 21122233467899999999999999999999999999998764 777776666655
Q ss_pred EEEE---eCCCCcEEEEEcCCCcEEEEEC
Q 009059 353 SLDF---HPSKEDLLCSCDNNSEIRYWSI 378 (545)
Q Consensus 353 ~l~~---~p~~~~ll~s~s~dg~I~lwd~ 378 (545)
.+-+ ..++ ..+.+++..|. +|.+
T Consensus 177 ~vi~v~~t~~n-S~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQN-SKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCC-cEEEEccCCCc--eEEE
Confidence 5544 3333 34557776665 4543
No 401
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.56 E-value=0.88 Score=44.60 Aligned_cols=268 Identities=10% Similarity=0.080 Sum_probs=123.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec--cC---CccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EH---TQWITDVRFSPSLSRLATSSADRTVRVWDTENP 337 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~--~h---~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~ 337 (545)
...+..|+|..+..-+|+|. .+.| +-..+.|+.-.... .. .-...+|.|..+ ..+++| ..+ +.+...+.+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPG-LLLHTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETT-EEEEESSTT
T ss_pred CCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCc-eEEEecCCC
Confidence 34789999996666666654 4543 22223332221111 11 224667788643 344444 455 333333323
Q ss_pred CeeeeEec---cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccCCeeEEEEeCCCCEEEEEECCC
Q 009059 338 DYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIEN 412 (545)
Q Consensus 338 ~~~~~~~~---~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~~~~~dg 412 (545)
. ....+. .-.+....+....++ ..++.+ ..|.|+. ..+.++.-..+. ....+..+..++++.+++++....
T Consensus 91 ~-tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~-~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~ 166 (302)
T PF14870_consen 91 K-TWERVPLSSKLPGSPFGITALGDG-SAELAG-DRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGN 166 (302)
T ss_dssp S-S-EE----TT-SS-EEEEEEEETT-EEEEEE-TT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSS
T ss_pred C-CcEEeecCCCCCCCeeEEEEcCCC-cEEEEc-CCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECccc
Confidence 2 222221 122344444444443 333333 3454432 223333222222 234577888888877666665556
Q ss_pred eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEE----EeeCCCceEEEEEcCCC
Q 009059 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE----LSCTGNKFHSCVFHPTF 488 (545)
Q Consensus 413 ~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~----~~~~~~~v~~~~~sp~~ 488 (545)
.+.-||.....-...-......|..+.|.|++.+.+.+..+.|++=+.... ...... +......+..++|.+++
T Consensus 167 ~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~--~~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 167 FYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDD--GETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp EEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTE--EEEE---B-TTSS--S-EEEEEESSSS
T ss_pred EEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCC--ccccccccCCcccCceeeEEEEecCCC
Confidence 666788654322222223467999999999999888777778888772211 011111 11233457899999887
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEEEec----cCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 489 PSLLVIGCYETLELWNMTENKTLTLS----AHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 489 ~~l~~~~~dg~I~iwd~~~~~~~~~~----~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
. +.+++..|.+ +...+.++.-... .-...+..|.|.++.+-+|. +.+|.|.-|
T Consensus 245 ~-~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 245 E-IWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp --EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred C-EEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 6 5556666655 4445555544222 33556888998766554544 567877655
No 402
>PHA02713 hypothetical protein; Provisional
Probab=96.53 E-value=0.19 Score=54.26 Aligned_cols=202 Identities=8% Similarity=-0.004 Sum_probs=95.4
Q ss_pred eEEEEECCCCCeee-eEeccCcccEEEEEEeCCCCcEEEEEcCC------CcEEEEECCCCceeeEEeccCCe-eEEEEe
Q 009059 328 TVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSGA-TQMRFQ 399 (545)
Q Consensus 328 ~I~vwd~~~~~~~~-~~~~~h~~~V~~l~~~p~~~~ll~s~s~d------g~I~lwd~~~~~~~~~~~~~~~v-~~l~~s 399 (545)
.+..||..+..... ..+.. ...-.+++.. ++.+++.|+.+ ..+..||+.+......-...... ......
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~-~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPN-HIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCc-cccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE
Confidence 46778877655311 11111 1111223333 24566677643 34778898776543221111111 111222
Q ss_pred CCCCEEEEEECCC-----eEEEEECCCCEEEE--EecCCCCCEEEEEEcCCCCEEEEEe-CC------------------
Q 009059 400 PRLGRILAAAIEN-----YISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-DE------------------ 453 (545)
Q Consensus 400 p~~~~l~~~~~dg-----~I~i~d~~~~~~~~--~~~~h~~~I~~l~~sp~g~~l~s~s-dg------------------ 453 (545)
-++..+++|+.++ .+..||..+..-.. .+.........+. -+|++.+.|+ ++
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccc
Confidence 3445666676543 48889988764322 2221111122222 2567666666 42
Q ss_pred -----cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC------CeEEEEeCCC-CeEEEe---ccCCC
Q 009059 454 -----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY------ETLELWNMTE-NKTLTL---SAHDK 518 (545)
Q Consensus 454 -----~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d------g~I~iwd~~~-~~~~~~---~~h~~ 518 (545)
.+..||..+.. ...+..+.. ......+..-+++..++||.+ ..+..||..+ ++.... .....
T Consensus 428 ~~~~~~ve~YDP~td~-W~~v~~m~~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 428 THSSNKVIRYDTVNNI-WETLPNFWT--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred ccccceEEEECCCCCe-EeecCCCCc--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 36677776542 111111111 111112223345555566543 2478899987 555422 22222
Q ss_pred CeeEEEEeCCCCEEEEEeCCC
Q 009059 519 LVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 519 ~V~~l~~spd~~~las~s~Dg 539 (545)
....+. -++++.++||.||
T Consensus 505 ~~~~~~--~~~~iyv~Gg~~~ 523 (557)
T PHA02713 505 ALHTIL--HDNTIMMLHCYES 523 (557)
T ss_pred cceeEE--ECCEEEEEeeecc
Confidence 222222 2678889999888
No 403
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.52 E-value=0.73 Score=44.01 Aligned_cols=160 Identities=12% Similarity=0.150 Sum_probs=99.9
Q ss_pred eccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEecc-CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC
Q 009059 301 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379 (545)
Q Consensus 301 l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~-h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~ 379 (545)
+.+-...|.++.|+|+.+.|++......-.||=..++.. +++..- .-.....|.+..++ .++++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdl-irtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL-IRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCce-EEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEc
Confidence 344455699999999999988887777777776555664 544331 12334566776654 455566678888888776
Q ss_pred CCceeeE-----Ee-----c-cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE---EEEecCCC-------CCEEEE
Q 009059 380 NGSCAGV-----FK-----C-QSGATQMRFQPRLGRILAAAIENYISILDVETQVC---RLKLQGHK-------NQVHSV 438 (545)
Q Consensus 380 ~~~~~~~-----~~-----~-~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~---~~~~~~h~-------~~I~~l 438 (545)
....+.. +. . +.+...++|.|....|+++-..+-+.||.+..... ......+. ..|.++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 5532221 11 1 34577899999999999998888777777653321 11111111 246777
Q ss_pred EEcCCC-CEEEEEe-CCcEEEEEcCC
Q 009059 439 CWNTSG-EYLASVS-DELVRVWSIGS 462 (545)
Q Consensus 439 ~~sp~g-~~l~s~s-dg~I~vwd~~~ 462 (545)
.|++.. .+|+.+. ++.+.-.|...
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCC
Confidence 887654 4444444 55666666543
No 404
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.49 E-value=1.1 Score=45.05 Aligned_cols=187 Identities=15% Similarity=0.167 Sum_probs=114.0
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc----CCCCE--EEEEe-CC---CeEEEEECCCCCeeeeE
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS----PSLSR--LATSS-AD---RTVRVWDTENPDYSLRT 343 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s----p~~~~--l~t~s-~d---g~I~vwd~~~~~~~~~~ 343 (545)
...+++....++-+.+||+.. +.+..+.. +.++.+... -+++. |+.++ .+ .+|++|.+......+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~G-k~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDG-KELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS--EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCCC-cEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 445777777888999999865 55555532 233333321 13332 44443 32 47999987642222433
Q ss_pred ecc-------CcccEEEEEEe--C-CCCcEEEEEcCCCcEEEEECC---CC----ceeeEEeccCCeeEEEEeCCCCEEE
Q 009059 344 FTG-------HSTTVMSLDFH--P-SKEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKCQSGATQMRFQPRLGRIL 406 (545)
Q Consensus 344 ~~~-------h~~~V~~l~~~--p-~~~~ll~s~s~dg~I~lwd~~---~~----~~~~~~~~~~~v~~l~~sp~~~~l~ 406 (545)
+.. ....++.+|+. + ++..+++....+|.+.-|.+. .+ +.++.|.....+..+......+.|+
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLY 223 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEE
Confidence 321 12347777774 3 355667778889988888774 23 4678888888999999999999999
Q ss_pred EEECCCeEEEEECCC-----CEEEEEecC--CCCCEEEEEEc--CCC-CEEEEEe--CCcEEEEEcCCC
Q 009059 407 AAAIENYISILDVET-----QVCRLKLQG--HKNQVHSVCWN--TSG-EYLASVS--DELVRVWSIGSG 463 (545)
Q Consensus 407 ~~~~dg~I~i~d~~~-----~~~~~~~~~--h~~~I~~l~~s--p~g-~~l~s~s--dg~I~vwd~~~~ 463 (545)
++-.+--|..|+.+- +..+....+ ....|-.|++- .++ .||++.+ ++...||+....
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 999999999999862 233333322 34567777764 343 3666666 779999998754
No 405
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.48 E-value=1.9 Score=47.64 Aligned_cols=216 Identities=11% Similarity=0.067 Sum_probs=128.8
Q ss_pred EEEEEeCCCeEEEEECCCCC-eeeeEeccCcccEEEEEEeCCCCcEEEEEcC-----------C---CcEEEEECCCCce
Q 009059 319 RLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------N---SEIRYWSINNGSC 383 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~-~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~-----------d---g~I~lwd~~~~~~ 383 (545)
.|+++. .+.+++.-++.-. ..+++.. -......+++.+.. .++++.+. . ..++++|-++.+.
T Consensus 686 ~l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v 762 (1096)
T KOG1897|consen 686 SLASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV 762 (1096)
T ss_pred eEEEec-CCceEEEEecchhhcceeeec-CCCChhheEecccc-eEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence 455553 4457776665322 2234433 33455667776632 23323221 1 2467777777666
Q ss_pred eeEEeccC-----CeeEEEEeCC-CCEEEEEEC----------CCeEEEEECCCCEEEEEecC--CCCCEEEEEEcCCCC
Q 009059 384 AGVFKCQS-----GATQMRFQPR-LGRILAAAI----------ENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGE 445 (545)
Q Consensus 384 ~~~~~~~~-----~v~~l~~sp~-~~~l~~~~~----------dg~I~i~d~~~~~~~~~~~~--h~~~I~~l~~sp~g~ 445 (545)
+...+... .+.++.|..+ +.++++|+. .|.|.+|.......+..... -.+.+.++.. -+|+
T Consensus 763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngk 841 (1096)
T KOG1897|consen 763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGK 841 (1096)
T ss_pred EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCe
Confidence 65444322 2455568777 566666652 47888888776333222221 2345555543 2455
Q ss_pred EEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE--EeCCCCeEE--EeccCCCCee
Q 009059 446 YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTENKTL--TLSAHDKLVS 521 (545)
Q Consensus 446 ~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i--wd~~~~~~~--~~~~h~~~V~ 521 (545)
+|| +-...|++|+..+. +.++.-..+...+..+...-.+..+++|..-+.+.+ |+..++... .-.-+..+++
T Consensus 842 llA-~In~~vrLye~t~~---~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmt 917 (1096)
T KOG1897|consen 842 LLA-GINQSVRLYEWTTE---RELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMT 917 (1096)
T ss_pred EEE-ecCcEEEEEEcccc---ceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCcccee
Confidence 554 44668999999876 455555567788999999999999999999886555 555554455 3345778888
Q ss_pred EEEEeCCCCEEEEEeCCCcEEE
Q 009059 522 SLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 522 ~l~~spd~~~las~s~Dg~I~i 543 (545)
++.+-.+.. ++.+..+|.+++
T Consensus 918 aveil~~d~-ylgae~~gNlf~ 938 (1096)
T KOG1897|consen 918 AVEILDDDT-YLGAENSGNLFT 938 (1096)
T ss_pred eEEEecCce-EEeecccccEEE
Confidence 888865554 444556666654
No 406
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.36 E-value=1.5 Score=48.90 Aligned_cols=188 Identities=15% Similarity=0.168 Sum_probs=113.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCcc--------EEEEEEcC----------------CCCEEEEEeCCCeEE
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--------ITDVRFSP----------------SLSRLATSSADRTVR 330 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~--------V~~l~~sp----------------~~~~l~t~s~dg~I~ 330 (545)
+..|+.++.++.|.-.|..+|+.+..+...... ...+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777777888988999999888776432211 11233321 234788888999999
Q ss_pred EEECCCCCeeeeEeccCcccEE-------------EEEEeC--CCCcEEEEEc----------CCCcEEEEECCCCceee
Q 009059 331 VWDTENPDYSLRTFTGHSTTVM-------------SLDFHP--SKEDLLCSCD----------NNSEIRYWSINNGSCAG 385 (545)
Q Consensus 331 vwd~~~~~~~~~~~~~h~~~V~-------------~l~~~p--~~~~ll~s~s----------~dg~I~lwd~~~~~~~~ 385 (545)
-.|.++++.+ ..+. ..+.|. .+.-.| .++.++ .|+ .+|.|+-+|+++|+.+.
T Consensus 274 ALDA~TGk~~-W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLC-EDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVV-IGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEE-EEec-CCCceeeecccCcCCCcccccccCCEEECCEEE-EEecccccccccCCCcEEEEEECCCCcEee
Confidence 9999998863 3322 111110 011111 122333 443 26889999999999988
Q ss_pred EEeccCC------------------e-eEEEEeCCCCEEEEEE------------------CCCeEEEEECCCCEEEEEe
Q 009059 386 VFKCQSG------------------A-TQMRFQPRLGRILAAA------------------IENYISILDVETQVCRLKL 428 (545)
Q Consensus 386 ~~~~~~~------------------v-~~l~~sp~~~~l~~~~------------------~dg~I~i~d~~~~~~~~~~ 428 (545)
.+..... + ..++++++.+.++... ..+.|.-.|+++++.+..+
T Consensus 351 ~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 351 AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF 430 (764)
T ss_pred EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence 7753110 0 2345666655555432 1346778899999988877
Q ss_pred cCCCC---------CEEEEEEcC-CCC---EEEEEe-CCcEEEEEcCCCCC
Q 009059 429 QGHKN---------QVHSVCWNT-SGE---YLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 429 ~~h~~---------~I~~l~~sp-~g~---~l~s~s-dg~I~vwd~~~~~~ 465 (545)
+.... ...-+.+.. +|+ .++.+. +|.+.++|-++++.
T Consensus 431 Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 431 QTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred cccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 65111 111122322 553 677777 89999999999854
No 407
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.35 E-value=1.1 Score=43.23 Aligned_cols=197 Identities=16% Similarity=0.147 Sum_probs=113.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcC-------CCeEEEEecc-----CCccEEEEEEcCCC------------CEEE
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTLEE-----HTQWITDVRFSPSL------------SRLA 321 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~-------~~~~~~~l~~-----h~~~V~~l~~sp~~------------~~l~ 321 (545)
-+.|+|+|.+.+-++....+...+||.. ...++.++.. .....+.+.|+... ..++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4569999999888888788999999986 1223344432 23457778887432 2367
Q ss_pred EEeCCCeEEEEECCCCCe----eeeEec-cCcccEE-EEEEe--CCCCcEEEEEcCCCcEEEEECCCCcee--eEEecc-
Q 009059 322 TSSADRTVRVWDTENPDY----SLRTFT-GHSTTVM-SLDFH--PSKEDLLCSCDNNSEIRYWSINNGSCA--GVFKCQ- 390 (545)
Q Consensus 322 t~s~dg~I~vwd~~~~~~----~~~~~~-~h~~~V~-~l~~~--p~~~~ll~s~s~dg~I~lwd~~~~~~~--~~~~~~- 390 (545)
.+++||+|.-|...-... ....+. ...+.|+ .+++. ..+..|.++--..++|.+||-.-.... ..+..+
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 888999999998532211 112222 1123343 34444 334556656567889999985422211 011100
Q ss_pred --C-----C---------eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec--CCCCCEEEEEEcC------CCCE
Q 009059 391 --S-----G---------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNT------SGEY 446 (545)
Q Consensus 391 --~-----~---------v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~sp------~g~~ 446 (545)
. . |+-..-.++...=+.+..-|.|.+||+... .++++. +.-...+.|+..| .|.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-LLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-EEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 0 0 111112222222333444578999998744 444442 2334556777755 4566
Q ss_pred EEEEe-CCcEEEEEcCCC
Q 009059 447 LASVS-DELVRVWSIGSG 463 (545)
Q Consensus 447 l~s~s-dg~I~vwd~~~~ 463 (545)
|+.-- ||+|..||..++
T Consensus 264 LVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSG 281 (336)
T ss_pred EEeecCCceeEEecCCCC
Confidence 66555 999999999877
No 408
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.25 E-value=0.29 Score=50.89 Aligned_cols=177 Identities=13% Similarity=0.190 Sum_probs=107.2
Q ss_pred ccEEEEEEeCCCCcEEEEEc--CCCcEEEEECCCCceeeEEeccCCeeEEEEeCC----CCEEEEEECCCeEEEEECCC-
Q 009059 349 TTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR----LGRILAAAIENYISILDVET- 421 (545)
Q Consensus 349 ~~V~~l~~~p~~~~ll~s~s--~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~----~~~l~~~~~dg~I~i~d~~~- 421 (545)
.++..++|. ||+.++.+.- .+|++++=| ...+..| ..|..+.|.|- ...+++.-....|.||.+.-
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF---EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF---EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc---ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 468889996 4556655542 344444433 2233333 56888899885 34688888999999998752
Q ss_pred ----CEEEEEecCC-C--C--CEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEE
Q 009059 422 ----QVCRLKLQGH-K--N--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 491 (545)
Q Consensus 422 ----~~~~~~~~~h-~--~--~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l 491 (545)
.+.+..-..+ . - -...+.|+|....|++-. .+.-.++++..... .....+ ...+-|.|.+|.+||..|
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADI-KTSGLIHCACWTKDGQRL 170 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-eEEEec-cCCceEEEEEecCcCCEE
Confidence 2222221111 1 1 124578999999998877 44445666655432 222233 456789999999999988
Q ss_pred EEEEcCC-eEEEEeCCCCeEE-----EeccCCCCeeEEEEeCCCCEEEEE
Q 009059 492 LVIGCYE-TLELWNMTENKTL-----TLSAHDKLVSSLAASTVNGMVASA 535 (545)
Q Consensus 492 ~~~~~dg-~I~iwd~~~~~~~-----~~~~h~~~V~~l~~spd~~~las~ 535 (545)
+++-... .-+|||-...... .+..-.+.|.+|.-.-| ..+|.+
T Consensus 171 VVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d-sqVAva 219 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD-SQVAVA 219 (671)
T ss_pred EEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc-ceEEEE
Confidence 7776655 7889987554322 23344556666654332 244444
No 409
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.25 E-value=1.6 Score=48.60 Aligned_cols=146 Identities=6% Similarity=-0.003 Sum_probs=83.9
Q ss_pred EEEEEcCCCcEEEEECCCCceeeEEeccCCee-------------EEEEeC--CCCEEEEEEC----------CCeEEEE
Q 009059 363 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-------------QMRFQP--RLGRILAAAI----------ENYISIL 417 (545)
Q Consensus 363 ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~-------------~l~~sp--~~~~l~~~~~----------dg~I~i~ 417 (545)
.++.++.|+.|.-.|.++|+.+..+...+.+. .+.-.| .++.+++++. +|.|+-|
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 44577789999999999999987765433221 111112 2356777653 5889999
Q ss_pred ECCCCEEEEEecCC---------CCC--------E-EEEEEcCCCCEEEEEe-------------------CCcEEEEEc
Q 009059 418 DVETQVCRLKLQGH---------KNQ--------V-HSVCWNTSGEYLASVS-------------------DELVRVWSI 460 (545)
Q Consensus 418 d~~~~~~~~~~~~h---------~~~--------I-~~l~~sp~g~~l~s~s-------------------dg~I~vwd~ 460 (545)
|+++++.+..+..- .+. + ...++++...+++.+. .+.|.-.|.
T Consensus 342 Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~ 421 (764)
T TIGR03074 342 DVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDA 421 (764)
T ss_pred ECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeC
Confidence 99999988776421 011 1 1233444433333321 124555556
Q ss_pred CCCCCcceEEEEee--CC-------CceEEEEEcC-CCC---EEEEEEcCCeEEEEeCCCCeEE
Q 009059 461 GSGSKGECIHELSC--TG-------NKFHSCVFHP-TFP---SLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 461 ~~~~~~~~i~~~~~--~~-------~~v~~~~~sp-~~~---~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
++++. .-.+.. |. ....-+.+.. +++ .++.++.+|.++++|.++++.+
T Consensus 422 ~TGk~---~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 422 TTGKE---RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred CCCce---EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 55532 222211 11 0111112222 453 7888999999999999999887
No 410
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.24 E-value=0.35 Score=49.45 Aligned_cols=71 Identities=13% Similarity=0.226 Sum_probs=48.4
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEE-EEEc-CC----------------CCEEEEEe--C
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS-VCWN-TS----------------GEYLASVS--D 452 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~-l~~s-p~----------------g~~l~s~s--d 452 (545)
+.+++.+|.+.+.++...-|.|.++|+.++..++.+++..+.=.. +... .. ..+|+.-. .
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR 389 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR 389 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence 678999999776666666799999999999888888775542111 1110 10 12344433 7
Q ss_pred CcEEEEEcCCC
Q 009059 453 ELVRVWSIGSG 463 (545)
Q Consensus 453 g~I~vwd~~~~ 463 (545)
|.|.||.++.+
T Consensus 390 g~lEvW~~~~g 400 (415)
T PF14655_consen 390 GILEVWSMRQG 400 (415)
T ss_pred CeEEEEecCCC
Confidence 79999999887
No 411
>PRK13684 Ycf48-like protein; Provisional
Probab=96.20 E-value=1.1 Score=45.05 Aligned_cols=150 Identities=11% Similarity=0.109 Sum_probs=87.7
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEE-EECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce
Q 009059 305 TQWITDVRFSPSLSRLATSSADRTVRV-WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~dg~I~v-wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~ 383 (545)
...+.++.+.+++.+++++ ..|.+.. +|-..... ......-...++++.+.+++. +++.+ ..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW-~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAW-TPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeE-EEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCc
Confidence 4568899999988776665 4554432 22221112 122223456789999999865 44344 467665323444433
Q ss_pred eeEEec-----cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEe---cCCCCCEEEEEEcCCCCEEEEEeCCcE
Q 009059 384 AGVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVSDELV 455 (545)
Q Consensus 384 ~~~~~~-----~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~---~~h~~~I~~l~~sp~g~~l~s~sdg~I 455 (545)
-..... ...+..+.+.+++ .+++++.+|.|.. ....++.-... ..-....+.+.|..+++.+++|..|.|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~-~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPG-EIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCC-CEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 222221 1346778888874 4666667776654 33433332222 122246888888888889998889988
Q ss_pred EEEEc
Q 009059 456 RVWSI 460 (545)
Q Consensus 456 ~vwd~ 460 (545)
..|+-
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 87763
No 412
>PHA03098 kelch-like protein; Provisional
Probab=96.16 E-value=0.26 Score=52.98 Aligned_cols=197 Identities=10% Similarity=0.086 Sum_probs=93.7
Q ss_pred CCCEEEEEeCCC------eEEEEECCCCCeeeeEecc---CcccEEEEEEeCCCCcEEEEEcCC-----CcEEEEECCCC
Q 009059 316 SLSRLATSSADR------TVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNG 381 (545)
Q Consensus 316 ~~~~l~t~s~dg------~I~vwd~~~~~~~~~~~~~---h~~~V~~l~~~p~~~~ll~s~s~d-----g~I~lwd~~~~ 381 (545)
++..++.|+.++ .+..||..+... ..+.. ..... +++.. ++.+++.|+.+ ..+..||..+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W--~~~~~~~~~R~~~-~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW--NKVPELIYPRKNP-GVTVF--NNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCee--eECCCCCcccccc-eEEEE--CCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 455666665532 467778776543 22211 11111 22222 24566677654 34777888766
Q ss_pred ceeeEEeccCC--eeEEEEeCCCCEEEEEECC------CeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe
Q 009059 382 SCAGVFKCQSG--ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 382 ~~~~~~~~~~~--v~~l~~sp~~~~l~~~~~d------g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s 451 (545)
+....-....+ -.+++ .-++..++.|+.+ +.+..||..+.+-... +...... .+++. .++.+++.|+
T Consensus 369 ~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG 445 (534)
T PHA03098 369 KWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIY-HDGKIYVIGG 445 (534)
T ss_pred ceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEE-ECCEEEEECC
Confidence 54332111111 11222 2244555556532 4688999887543221 1111111 12222 3556666555
Q ss_pred -CC--------cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-----CeEEEEeCCCCeEEEeccCC
Q 009059 452 -DE--------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHD 517 (545)
Q Consensus 452 -dg--------~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~ 517 (545)
++ .+.+||..+..- ..+..+.........+.+ +++.++.||.+ ..|.+||..+++...+....
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNKW-TELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred ccCCCCCcccceEEEecCCCCce-eeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCc
Confidence 21 378888876421 111111111111122222 56666666654 47899999888776554444
Q ss_pred CCeeEE
Q 009059 518 KLVSSL 523 (545)
Q Consensus 518 ~~V~~l 523 (545)
..+.++
T Consensus 523 ~~~~~~ 528 (534)
T PHA03098 523 KVIGSL 528 (534)
T ss_pred ccccce
Confidence 444443
No 413
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=0.056 Score=59.79 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=95.4
Q ss_pred cEEEEEEcCCCCEEEEE--eCCCeEEEEECCCCCeee----eEec------cCcccEEEEEEeCCCCcEEEEEcCCCcEE
Q 009059 307 WITDVRFSPSLSRLATS--SADRTVRVWDTENPDYSL----RTFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~--s~dg~I~vwd~~~~~~~~----~~~~------~h~~~V~~l~~~p~~~~ll~s~s~dg~I~ 374 (545)
+|..+...+|+...++. +.+-.|..||+++-.... +-+. ....-..++.|+|.-....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555666676654443 344578999987532111 1111 12234668889987666667788899999
Q ss_pred EEECCCCc-eeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC----CCCCEEEEEEcCCCCEEEE
Q 009059 375 YWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLAS 449 (545)
Q Consensus 375 lwd~~~~~-~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~----h~~~I~~l~~sp~g~~l~s 449 (545)
+..+.... .+..+......++++|+|.|..+++|-..|++.-|...-. ....+.+ ....|.+|+|.....++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 98876432 2333455677899999999999999999999998876533 2222221 2468999999888777776
Q ss_pred Ee
Q 009059 450 VS 451 (545)
Q Consensus 450 ~s 451 (545)
-+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 54
No 414
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.08 E-value=0.013 Score=53.47 Aligned_cols=135 Identities=17% Similarity=0.168 Sum_probs=79.3
Q ss_pred EEEEECCCeEEEEECCCCEEEEEec-CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC-CceE-
Q 009059 405 ILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG-NKFH- 480 (545)
Q Consensus 405 l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~-~~v~- 480 (545)
+.+.+.+|.|.-++++..+....-. -|... ..+ ..-+.-+++|+ +|.|++|...-... ........ ..|.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v--~~~~~~~~vG~~dg~v~~~n~n~~g~---~~d~~~s~~e~i~~ 106 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QRV--VTASAKLMVGTSDGAVYVFNWNLEGA---HSDRVCSGEESIDL 106 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc-eee--cccCceEEeecccceEEEecCCccch---HHHhhhccccccee
Confidence 4555667777777766432211111 01111 111 12334566666 99999998752211 11111111 1222
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCC-CCeeEEEEeCCCCEEEEE--eCCCcEEEcC
Q 009059 481 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KLVSSLAASTVNGMVASA--SHDKCVKIWK 545 (545)
Q Consensus 481 ~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~-~~V~~l~~spd~~~las~--s~Dg~I~iWd 545 (545)
.+..-.++.+.++++.++.|+.|++.-++.+ ....|. .++..+..+..+++|+.+ |.|..++.|+
T Consensus 107 ~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 107 GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred ccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcc
Confidence 2222334557889999999999999999988 444566 567777777777888888 8888888885
No 415
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.04 E-value=0.022 Score=38.57 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 297 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~ 297 (545)
...|.+++|+|..++||.+..+|.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 346999999999999999999999999998 4443
No 416
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.02 E-value=2.2 Score=43.73 Aligned_cols=146 Identities=11% Similarity=0.065 Sum_probs=81.6
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcc--eEEEE
Q 009059 395 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE--CIHEL 472 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~--~i~~~ 472 (545)
.+...+++..++++.....++-||-....-...-......+..+.|.+++.+++++..|.+.. ....+.... .+...
T Consensus 243 ~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~~~ 321 (398)
T PLN00033 243 TVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFEEA 321 (398)
T ss_pred eEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccceeec
Confidence 345566654444443333333344322110111122345789999999999998887776443 333332111 22222
Q ss_pred ee--CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEe----ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 473 SC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 473 ~~--~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~----~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
.. ....+..+.|.+++. +++++..|.+.... ..++.-.. ..-...++.+.|.++++.+++ +.+|.|.-|
T Consensus 322 ~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 322 DIKSRGFGILDVGYRSKKE-AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred ccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence 21 223588899998776 67777778666554 44444322 233466889999777665555 467877655
No 417
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.88 E-value=2.4 Score=43.13 Aligned_cols=220 Identities=10% Similarity=0.064 Sum_probs=104.1
Q ss_pred CCCEEEEEe-CCCeEEEEECCCCC-e--eeeEecc---Cc----ccEEEEEEeCCCCcEEEEE--cC----CCcEEEEEC
Q 009059 316 SLSRLATSS-ADRTVRVWDTENPD-Y--SLRTFTG---HS----TTVMSLDFHPSKEDLLCSC--DN----NSEIRYWSI 378 (545)
Q Consensus 316 ~~~~l~t~s-~dg~I~vwd~~~~~-~--~~~~~~~---h~----~~V~~l~~~p~~~~ll~s~--s~----dg~I~lwd~ 378 (545)
+.++|+..+ ..+.|.|.|+.+.- . ..+.+.. +. .....+...|+|+.++ ++ +. -|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imI-S~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMI-SALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEE-EEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEE-EeccCCCCCCCCcEEEEcC
Confidence 456777766 67899999997422 1 1222221 11 1223344457765444 43 22 246888998
Q ss_pred CCCceeeEEeccCC----eeEEEEeCCCCEEEEEE--------------------CCCeEEEEECCCCEEEEEecCCCC-
Q 009059 379 NNGSCAGVFKCQSG----ATQMRFQPRLGRILAAA--------------------IENYISILDVETQVCRLKLQGHKN- 433 (545)
Q Consensus 379 ~~~~~~~~~~~~~~----v~~l~~sp~~~~l~~~~--------------------~dg~I~i~d~~~~~~~~~~~~h~~- 433 (545)
++.+.....+.... -..+-|.|..+.+++.. ....+.+||+.+.+.+.++.--..
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 88888777765433 45677888877777764 134799999999999988875332
Q ss_pred -CEEEEEEc--CCCCEEEEEe--CCcEEEEEc-CCCCC-cceEEEEeeC-----------------CCceEEEEEcCCCC
Q 009059 434 -QVHSVCWN--TSGEYLASVS--DELVRVWSI-GSGSK-GECIHELSCT-----------------GNKFHSCVFHPTFP 489 (545)
Q Consensus 434 -~I~~l~~s--p~g~~l~s~s--dg~I~vwd~-~~~~~-~~~i~~~~~~-----------------~~~v~~~~~sp~~~ 489 (545)
.+..|.|. |+..+=++++ ...|..|-- ..+.- .+.+..+... ..-|+.+.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 34566664 4455544444 555555543 32210 1122222111 23478999999999
Q ss_pred EEEEEEc-CCeEEEEeCCCCe---EE-E-ecc---------------CCCCeeEEEEeCCCCEEEEEe
Q 009059 490 SLLVIGC-YETLELWNMTENK---TL-T-LSA---------------HDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 490 ~l~~~~~-dg~I~iwd~~~~~---~~-~-~~~---------------h~~~V~~l~~spd~~~las~s 536 (545)
+|++... .|.|+.||+.... ++ . ..+ -.+...-|..|.||+.|....
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9988876 5799999997643 22 1 111 112345678888998776543
No 418
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=0.03 Score=61.58 Aligned_cols=96 Identities=16% Similarity=0.142 Sum_probs=68.9
Q ss_pred CCCEEEEEECCCeEEEEECCCC-EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCc
Q 009059 401 RLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 478 (545)
Q Consensus 401 ~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~ 478 (545)
.+..+++++..|.+..+|.... .....-..-.++|++++|+.+|.+++.|- +|.|.+||+..+ ..++.+..+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~---k~l~~i~e~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA---KILKVITEHGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC---cceeeeeecCCc
Confidence 3467888888999999998764 21122222457999999999999999998 999999999887 445555555544
Q ss_pred eE---EEEEcCCCCEEEEEEcCCe
Q 009059 479 FH---SCVFHPTFPSLLVIGCYET 499 (545)
Q Consensus 479 v~---~~~~sp~~~~l~~~~~dg~ 499 (545)
.. .+.+..++..++++...|.
T Consensus 175 ~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred cceEEEEEEeCCCcEEEEccCCCc
Confidence 43 4445556666777777775
No 419
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.67 E-value=0.65 Score=47.28 Aligned_cols=145 Identities=10% Similarity=0.010 Sum_probs=81.3
Q ss_pred CCeeEEEEeCCCCEEEEEE-----------CCC-eEEEEECCC--CE--EEEEecCCCCCEEEEEEcCCCCEEEEEeCCc
Q 009059 391 SGATQMRFQPRLGRILAAA-----------IEN-YISILDVET--QV--CRLKLQGHKNQVHSVCWNTSGEYLASVSDEL 454 (545)
Q Consensus 391 ~~v~~l~~sp~~~~l~~~~-----------~dg-~I~i~d~~~--~~--~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~ 454 (545)
.....++|.++|..+++-. ..+ .|.+++-.+ ++ ....+.........+++.++| +++ +....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 4466788888866554432 123 677776543 22 223343334456889999988 444 44334
Q ss_pred EEEE-EcCCCC----CcceE-EEEeeC----CCceEEEEEcCCCCEEEEEEcC-------------------CeEEEEeC
Q 009059 455 VRVW-SIGSGS----KGECI-HELSCT----GNKFHSCVFHPTFPSLLVIGCY-------------------ETLELWNM 505 (545)
Q Consensus 455 I~vw-d~~~~~----~~~~i-~~~~~~----~~~v~~~~~sp~~~~l~~~~~d-------------------g~I~iwd~ 505 (545)
|..| |..... ..+.+ ..+... ......+.|.|+|.+.++.+.. +.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 4444 443211 11222 223221 2447789999999866655521 35666666
Q ss_pred CCCeEEEeccCCCCeeEEEEeCCCCEEEEEeC
Q 009059 506 TENKTLTLSAHDKLVSSLAASTVNGMVASASH 537 (545)
Q Consensus 506 ~~~~~~~~~~h~~~V~~l~~spd~~~las~s~ 537 (545)
.+++...+...-.....++|+++|+++++-..
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCCEEEEccC
Confidence 66554433322344678999999988776443
No 420
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.60 E-value=2.8 Score=41.93 Aligned_cols=231 Identities=12% Similarity=0.137 Sum_probs=117.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eeeE----eccCcccEEEEEEeCC---CCcEEEEEcCC-------
Q 009059 307 WITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRT----FTGHSTTVMSLDFHPS---KEDLLCSCDNN------- 370 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~--~~~~----~~~h~~~V~~l~~~p~---~~~ll~s~s~d------- 370 (545)
..+.|+|.||+++|++ ...|.|++++.. +.. .+.. ..........++++|+ ...+.+.....
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999877665 569999999933 332 2222 2234567899999994 23343333311
Q ss_pred -CcEEEEECCCC--c-----ee-eEEec----cCCeeEEEEeCCCCEEEEEECCC-------------eEEEEECCCCE-
Q 009059 371 -SEIRYWSINNG--S-----CA-GVFKC----QSGATQMRFQPRLGRILAAAIEN-------------YISILDVETQV- 423 (545)
Q Consensus 371 -g~I~lwd~~~~--~-----~~-~~~~~----~~~v~~l~~sp~~~~l~~~~~dg-------------~I~i~d~~~~~- 423 (545)
..|.-|....+ . .+ ..... ......+.|.|++..+++.+..+ .|.-.+....-
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 13444444333 1 11 11121 22356799999985555554322 23333322110
Q ss_pred -------------EEEEecCCCCCEEEEEEcCC-CCEEEEEe--CCcEEEEEcCCCCC----------------------
Q 009059 424 -------------CRLKLQGHKNQVHSVCWNTS-GEYLASVS--DELVRVWSIGSGSK---------------------- 465 (545)
Q Consensus 424 -------------~~~~~~~h~~~I~~l~~sp~-g~~l~s~s--dg~I~vwd~~~~~~---------------------- 465 (545)
.+. -.++ .....++|+|. |.++++-. +..=.|.-+..+..
T Consensus 161 ~dnP~~~~~~~~~~i~-A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIY-AYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp TTSTTTTSTTSTTTEE-EE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCCccccCCCceEEEE-EeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 000 0111 13467899998 76665533 33223322322211
Q ss_pred ----cceEEEEeeCCCceEEEEEcCC-------CCEEEEEEcCCeEEEEeCCCCeEE----Ee-ccCCCCeeEEEEeCCC
Q 009059 466 ----GECIHELSCTGNKFHSCVFHPT-------FPSLLVIGCYETLELWNMTENKTL----TL-SAHDKLVSSLAASTVN 529 (545)
Q Consensus 466 ----~~~i~~~~~~~~~v~~~~~sp~-------~~~l~~~~~dg~I~iwd~~~~~~~----~~-~~h~~~V~~l~~spd~ 529 (545)
...+..+. +...+..+.|... +.++++.-..+.|....++....+ .+ ......+..|++.|||
T Consensus 239 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG 317 (331)
T PF07995_consen 239 CPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG 317 (331)
T ss_dssp -TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred CCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence 01222232 2345666666543 333444444558888888755333 22 2344589999999999
Q ss_pred CEEEEEeCCCcEE
Q 009059 530 GMVASASHDKCVK 542 (545)
Q Consensus 530 ~~las~s~Dg~I~ 542 (545)
.++++.+.+|.|.
T Consensus 318 ~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 318 ALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEE-TTTTEE
T ss_pred eEEEEECCCCeEe
Confidence 9998888888874
No 421
>PLN02153 epithiospecifier protein
Probab=95.56 E-value=2.1 Score=42.98 Aligned_cols=175 Identities=8% Similarity=-0.021 Sum_probs=80.7
Q ss_pred CcEEEEEcCC-----CcEEEEECCCCceeeEEec-----cCC-eeEEEEeCCCCEEEEEECC-----------CeEEEEE
Q 009059 361 EDLLCSCDNN-----SEIRYWSINNGSCAGVFKC-----QSG-ATQMRFQPRLGRILAAAIE-----------NYISILD 418 (545)
Q Consensus 361 ~~ll~s~s~d-----g~I~lwd~~~~~~~~~~~~-----~~~-v~~l~~sp~~~~l~~~~~d-----------g~I~i~d 418 (545)
..+++.|+.+ ..+.+||+.+.+....-.. ... ....+...++..++.|+.+ ..|.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 4566666643 2578899887654332111 111 1112222344555666643 2578899
Q ss_pred CCCCEEEEEecCC-----CCCEEEEEEcCCCCEEEEEe-C-------------CcEEEEEcCCCCCcceEEEEe--eCCC
Q 009059 419 VETQVCRLKLQGH-----KNQVHSVCWNTSGEYLASVS-D-------------ELVRVWSIGSGSKGECIHELS--CTGN 477 (545)
Q Consensus 419 ~~~~~~~~~~~~h-----~~~I~~l~~sp~g~~l~s~s-d-------------g~I~vwd~~~~~~~~~i~~~~--~~~~ 477 (545)
.++.+-.. +... ...-.+++. -++++++.++ + +.|.+||+.+.. ...+.... ....
T Consensus 166 ~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~-W~~~~~~g~~P~~r 242 (341)
T PLN02153 166 IADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK-WTEVETTGAKPSAR 242 (341)
T ss_pred CCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCc-EEeccccCCCCCCc
Confidence 88764322 1111 011112222 2455555433 2 358888887642 12221110 0011
Q ss_pred ceEEEEEcCCCCEEEEEEcC--------------CeEEEEeCCCCeEEEeccCC------CC--eeEEEEeCCCCEEEEE
Q 009059 478 KFHSCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTLSAHD------KL--VSSLAASTVNGMVASA 535 (545)
Q Consensus 478 ~v~~~~~sp~~~~l~~~~~d--------------g~I~iwd~~~~~~~~~~~h~------~~--V~~l~~spd~~~las~ 535 (545)
...++ ...+++.++.|+.. ..|+.||..+.....+.... .. ..++.+.-++++++.|
T Consensus 243 ~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~g 321 (341)
T PLN02153 243 SVFAH-AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHG 321 (341)
T ss_pred ceeee-EEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEc
Confidence 11222 22345666666641 26888998877665432110 01 1233444445677777
Q ss_pred eCCC
Q 009059 536 SHDK 539 (545)
Q Consensus 536 s~Dg 539 (545)
+.++
T Consensus 322 G~~~ 325 (341)
T PLN02153 322 GKLP 325 (341)
T ss_pred CcCC
Confidence 7643
No 422
>PHA03098 kelch-like protein; Provisional
Probab=95.53 E-value=0.56 Score=50.48 Aligned_cols=183 Identities=9% Similarity=0.003 Sum_probs=87.5
Q ss_pred CCCEEEEEeCCC------cEEEEEcCCCeEEEE--eccCCccEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCCee
Q 009059 274 DGKLLATGGHDK------KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYS 340 (545)
Q Consensus 274 dg~~latg~~dg------~I~lwd~~~~~~~~~--l~~h~~~V~~l~~sp~~~~l~t~s~d-----g~I~vwd~~~~~~~ 340 (545)
++.+++.||.++ .+..||..+.+-... +.........+.+ ++++++.|+.+ ..+..||..+....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 456777776542 567788776544221 1111111222222 56777778765 35777888766542
Q ss_pred eeEeccCcccEEEEEEeCCCCcEEEEEcCC------CcEEEEECCCCceeeEEeccCC--eeEEEEeCCCCEEEEEECC-
Q 009059 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE- 411 (545)
Q Consensus 341 ~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d------g~I~lwd~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~~~~~d- 411 (545)
...-..+...-.+++.. ++.+++.|+.+ ..+..||+.+.+....-..+.+ ..++. ..++..+++|+.+
T Consensus 372 ~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~ 448 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGISY 448 (534)
T ss_pred eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCccC
Confidence 11100111111122222 24566566532 3588899887654332221111 11222 2343455555532
Q ss_pred -------CeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe-C-----CcEEEEEcCCC
Q 009059 412 -------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSG 463 (545)
Q Consensus 412 -------g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s-d-----g~I~vwd~~~~ 463 (545)
..+.+||..+.+-... +.........+.+ ++++++.|+ + +.|.+||..+.
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2388999887643221 1111111122222 566666665 3 26777777654
No 423
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=1 Score=45.51 Aligned_cols=119 Identities=17% Similarity=0.202 Sum_probs=82.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE----EEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 337 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~----~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~ 337 (545)
..++|.++.||+|.+.||+--.|+.|.+++....+.. .+.+.....|....|+.+ .-+|.....| +-+|-....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 3468999999999999999999999999997433322 233444566899999865 5566665555 777777665
Q ss_pred CeeeeEeccCcccEEEEEEeCCCCcEEEEEc-CCCcEEEEECCCCc
Q 009059 338 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGS 382 (545)
Q Consensus 338 ~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s-~dg~I~lwd~~~~~ 382 (545)
+..++..+.|...|.-..|.++..-++.+.+ ....+.=+-++++.
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 5557777888888988889888655443433 34444445454443
No 424
>PHA02790 Kelch-like protein; Provisional
Probab=95.34 E-value=0.86 Score=48.27 Aligned_cols=180 Identities=7% Similarity=-0.015 Sum_probs=83.4
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCCeEEE--EeccCCccEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCCeee-eE
Q 009059 274 DGKLLATGGHDK-----KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSL-RT 343 (545)
Q Consensus 274 dg~~latg~~dg-----~I~lwd~~~~~~~~--~l~~h~~~V~~l~~sp~~~~l~t~s~d--g~I~vwd~~~~~~~~-~~ 343 (545)
++.++++||.++ .+..||..+.+-.. .+.........+. -++.+.+.|+.+ ..+..||..++.... ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455667777543 46678877644322 2221111122222 366777777754 357788876554311 11
Q ss_pred eccCcccEEEEEEeCCCCcEEEEEcCCC---cEEEEECCCCceeeEEeccCCeeE-EEEeCCCCEEEEEECCCeEEEEEC
Q 009059 344 FTGHSTTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIENYISILDV 419 (545)
Q Consensus 344 ~~~h~~~V~~l~~~p~~~~ll~s~s~dg---~I~lwd~~~~~~~~~~~~~~~v~~-l~~sp~~~~l~~~~~dg~I~i~d~ 419 (545)
+. ....-.+++.. ++.+.+.|+.++ .+..||..+.+....-....+... ....-+ +.|++.+ |.+.+||.
T Consensus 349 l~-~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~-~~IYv~G--G~~e~ydp 422 (480)
T PHA02790 349 LL-KPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFG-RRLFLVG--RNAEFYCE 422 (480)
T ss_pred CC-CCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEEC-CEEEEEC--CceEEecC
Confidence 11 11111122222 245666776543 467788876654332221111111 111223 4444443 45778888
Q ss_pred CCCEEE--EEecCCCCCEEEEEEcCCCCEEEEEe-C-----CcEEEEEcCCC
Q 009059 420 ETQVCR--LKLQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSG 463 (545)
Q Consensus 420 ~~~~~~--~~~~~h~~~I~~l~~sp~g~~l~s~s-d-----g~I~vwd~~~~ 463 (545)
++.+-. ..+....... +++. -+|++.+.|+ + ..+.+||..+.
T Consensus 423 ~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 423 SSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 765432 2222112222 2222 2566666665 3 24566665543
No 425
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.34 E-value=6.4 Score=44.33 Aligned_cols=177 Identities=16% Similarity=0.197 Sum_probs=98.8
Q ss_pred cCCccEEEEEEc---C----CCCEEEEEeCCCeEEEEECC------CCC--------eeeeEecc---CcccEEEEEEeC
Q 009059 303 EHTQWITDVRFS---P----SLSRLATSSADRTVRVWDTE------NPD--------YSLRTFTG---HSTTVMSLDFHP 358 (545)
Q Consensus 303 ~h~~~V~~l~~s---p----~~~~l~t~s~dg~I~vwd~~------~~~--------~~~~~~~~---h~~~V~~l~~~p 358 (545)
....+|..|+|. . ..++|++- ....+.|+... ... .++..+.. ...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788888887 2 12355544 44556666621 100 01222221 224677888888
Q ss_pred CCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEE
Q 009059 359 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSV 438 (545)
Q Consensus 359 ~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l 438 (545)
....-||..+..|...||++....... .. ..-+.....|.| ++|.+. ...-..|
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~-----~~----------~~~~~~~~~gsi-~~d~~e----------~s~w~rI 209 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRK-----SS----------NLRLSRNISGSI-IFDPEE----------LSNWKRI 209 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccC-----Cc----------ceeeccCCCccc-cCCCcc----------cCcceee
Confidence 777778888888999999982111110 01 111111122333 233221 1455688
Q ss_pred EEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 439 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 439 ~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
.|.++-..|++++...+.++|+.+......+ ........|..+.-++.....+..-....|...++..
T Consensus 210 ~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l-~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 210 LWVSDSNRLLVCNRSKLMLIDFESNWQTEYL-VTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred EecCCCCEEEEEcCCceEEEECCCCCccchh-ccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 8988888888888888999999876442222 2223456677777777732222222335666667665
No 426
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.27 E-value=2.9 Score=40.03 Aligned_cols=140 Identities=18% Similarity=0.179 Sum_probs=87.7
Q ss_pred cEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEE-CCCCc
Q 009059 307 WITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS-INNGS 382 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s---~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd-~~~~~ 382 (545)
.+...++++++..++... ....+.++...... ...+.+ ..+....|.+++ .+.+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~~g--~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVLTG--GSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeeccC--CccccccccCCC-CEEEEEcCCCceEEEEecCCCc
Confidence 688999999999887765 33455565544322 222232 378888999995 4554555555566663 33332
Q ss_pred eee-EEe---ccCCeeEEEEeCCCCEEEEEEC---CCeEEEEECC---CC------EEEEEecCCCCCEEEEEEcCCCCE
Q 009059 383 CAG-VFK---CQSGATQMRFQPRLGRILAAAI---ENYISILDVE---TQ------VCRLKLQGHKNQVHSVCWNTSGEY 446 (545)
Q Consensus 383 ~~~-~~~---~~~~v~~l~~sp~~~~l~~~~~---dg~I~i~d~~---~~------~~~~~~~~h~~~I~~l~~sp~g~~ 446 (545)
... ... ....|..+.++|+|.+++.... ++.|.+--+. .+ ..+.........+..+.|.+++.+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 221 111 1127999999999999888773 4677766443 22 111222233568899999999998
Q ss_pred EEEEe
Q 009059 447 LASVS 451 (545)
Q Consensus 447 l~s~s 451 (545)
++.+.
T Consensus 180 ~V~~~ 184 (253)
T PF10647_consen 180 VVLGR 184 (253)
T ss_pred EEEeC
Confidence 88877
No 427
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.18 E-value=1.1 Score=45.50 Aligned_cols=142 Identities=11% Similarity=0.115 Sum_probs=77.5
Q ss_pred CCeEEEEEcCCCCEEEEEe-----------CCC-cEEEEEcCC--Ce--EEEEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 009059 264 SKVESCHFSPDGKLLATGG-----------HDK-KAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~-----------~dg-~I~lwd~~~--~~--~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg 327 (545)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+...-.....|+|.+++ +++ +....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 4467899999999877653 223 677775432 33 223443344456889999888 444 44444
Q ss_pred eEEEEECCCC-----C--eeeeEecc----CcccEEEEEEeCCCCcEEEEEcC------------------CCcEEEEEC
Q 009059 328 TVRVWDTENP-----D--YSLRTFTG----HSTTVMSLDFHPSKEDLLCSCDN------------------NSEIRYWSI 378 (545)
Q Consensus 328 ~I~vwd~~~~-----~--~~~~~~~~----h~~~V~~l~~~p~~~~ll~s~s~------------------dg~I~lwd~ 378 (545)
..++.|.... + ..+..+.. +......+.|.|+|..++..++. .|.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3344455321 1 11112222 13447789999998655544421 134555555
Q ss_pred CCCceeeEEeccCCeeEEEEeCCCCEEEE
Q 009059 379 NNGSCAGVFKCQSGATQMRFQPRLGRILA 407 (545)
Q Consensus 379 ~~~~~~~~~~~~~~v~~l~~sp~~~~l~~ 407 (545)
.+++.............++|++++..+++
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFC 200 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCCEEEE
Confidence 54443222222233567889888665544
No 428
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.06 E-value=3.2 Score=39.34 Aligned_cols=255 Identities=11% Similarity=-0.016 Sum_probs=153.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEe-
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF- 344 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~- 344 (545)
-..++-.|||..-+++...+.|--.|-.+++....--+....-..|..-||+..-++=+.. -|.-.|-++.......+
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence 4457888999888888888888888888988887666666667778888988766664433 45555555443221111
Q ss_pred -ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC
Q 009059 345 -TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVET 421 (545)
Q Consensus 345 -~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~ 421 (545)
..-........|.+.|. +-+++.. |.---.|.. ...++++. .......++..|+|...++.-.++.|-..|..+
T Consensus 143 ~~~a~~nlet~vfD~~G~-lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~ 219 (353)
T COG4257 143 LEHADANLETAVFDPWGN-LWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA 219 (353)
T ss_pred cccCCCcccceeeCCCcc-EEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence 12235577788888864 4446642 211111111 11222332 224577899999998888888888898888877
Q ss_pred CEEEEEe--cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC
Q 009059 422 QVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 498 (545)
Q Consensus 422 ~~~~~~~--~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 498 (545)
+.....- ......-..+--+|.|+.-++.. .+.+..||..... -.-..+.+....-.++.....++.-++-...+
T Consensus 220 ~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grVW~sea~ag 297 (353)
T COG4257 220 GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRVWLSEADAG 297 (353)
T ss_pred CCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcEEeeccccC
Confidence 6322211 11122344555567787777765 6788888865532 22233444555566777777776555555556
Q ss_pred eEEEEeCCCCeEEEeccCCCCeeEEEEe
Q 009059 499 TLELWNMTENKTLTLSAHDKLVSSLAAS 526 (545)
Q Consensus 499 ~I~iwd~~~~~~~~~~~h~~~V~~l~~s 526 (545)
.|.-||-++.....+.........+.+.
T Consensus 298 ai~rfdpeta~ftv~p~pr~n~gn~ql~ 325 (353)
T COG4257 298 AIGRFDPETARFTVLPIPRPNSGNIQLD 325 (353)
T ss_pred ceeecCcccceEEEecCCCCCCCceecc
Confidence 7777777776655444333333334433
No 429
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.03 E-value=0.087 Score=35.67 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=28.4
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
...|.+++|+|...+||.++.+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
No 430
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.82 E-value=1 Score=48.34 Aligned_cols=72 Identities=13% Similarity=0.161 Sum_probs=46.6
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEe--CCCCcEEEEEcCCCcEEEEEC
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCDNNSEIRYWSI 378 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~--p~~~~ll~s~s~dg~I~lwd~ 378 (545)
..+.-+.-+.-++..++-+....+.|||...+...........+.|.+++|. |++..++++|- .+.|.+|.-
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf-~~~v~l~~Q 103 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGF-PHHVLLYTQ 103 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEc-CcEEEEEEc
Confidence 3444455555455444444456899999987764433333557889999995 67777775554 777888753
No 431
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.76 E-value=1.8 Score=36.49 Aligned_cols=117 Identities=11% Similarity=0.061 Sum_probs=78.1
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCe-------eeeEeccCcccEEEEEEeC----CCCcEEEEEcCCCcEEEEEC
Q 009059 310 DVRFSPSLSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVMSLDFHP----SKEDLLCSCDNNSEIRYWSI 378 (545)
Q Consensus 310 ~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~-------~~~~~~~h~~~V~~l~~~p----~~~~ll~s~s~dg~I~lwd~ 378 (545)
.-+|......|++++.-|.|.|++...... .+..+. -...|++++--+ ++..+|+.|+ ...|..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 345666666888888999999998764321 123332 456788876544 3355666776 567999999
Q ss_pred CCCceeeEEeccCCeeEEEEeC---CCCEEEEEECCCeEEEEECCCCEEEEEe
Q 009059 379 NNGSCAGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKL 428 (545)
Q Consensus 379 ~~~~~~~~~~~~~~v~~l~~sp---~~~~l~~~~~dg~I~i~d~~~~~~~~~~ 428 (545)
....-+.....+.++.++.+-. ....++..+.+..|.-||.+..+...+.
T Consensus 81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 9887777666678888887643 2244666666777777877766655543
No 432
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.59 E-value=4.9 Score=39.25 Aligned_cols=164 Identities=9% Similarity=0.093 Sum_probs=94.7
Q ss_pred cEEEEECCCCceeeEEeccCC-------eeEEEEeCCC-----CEEEEEEC-CCeEEEEECCCCEEEEEecCCC------
Q 009059 372 EIRYWSINNGSCAGVFKCQSG-------ATQMRFQPRL-----GRILAAAI-ENYISILDVETQVCRLKLQGHK------ 432 (545)
Q Consensus 372 ~I~lwd~~~~~~~~~~~~~~~-------v~~l~~sp~~-----~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~------ 432 (545)
.|.+||+.+.+.++.+..+.. ...+.+.... .+.+.+.. .+.|.|||+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 677899999998888775533 5677777632 24444443 4689999999987766554321
Q ss_pred -------------CCEEEEEEcC---CCCEEEEEeCCcEEEEEcCC-----CCC------cceEEEEeeCCCceEEEEEc
Q 009059 433 -------------NQVHSVCWNT---SGEYLASVSDELVRVWSIGS-----GSK------GECIHELSCTGNKFHSCVFH 485 (545)
Q Consensus 433 -------------~~I~~l~~sp---~g~~l~s~sdg~I~vwd~~~-----~~~------~~~i~~~~~~~~~v~~~~~s 485 (545)
..+..++.+| ++++|....=...++|.+.+ ... ...+..+-........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 2356666655 66677666511223333322 111 01222222222456778899
Q ss_pred CCCCEEEEEEcCCeEEEEeCCC-----CeEE-EeccC-CCCeeEEEEeC--CCCEEEEE
Q 009059 486 PTFPSLLVIGCYETLELWNMTE-----NKTL-TLSAH-DKLVSSLAAST--VNGMVASA 535 (545)
Q Consensus 486 p~~~~l~~~~~dg~I~iwd~~~-----~~~~-~~~~h-~~~V~~l~~sp--d~~~las~ 535 (545)
++|..+++--..+.|..|+..+ ...+ ..... -..+.++.+.+ +|.+.+..
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 9998777777788999999986 2222 22222 35678999998 77655554
No 433
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.58 E-value=6.3 Score=40.42 Aligned_cols=147 Identities=10% Similarity=0.032 Sum_probs=80.5
Q ss_pred EEEEEEeCCCCcEEEEEcCCCcEE-EEECCCCc-eeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCE-----
Q 009059 351 VMSLDFHPSKEDLLCSCDNNSEIR-YWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV----- 423 (545)
Q Consensus 351 V~~l~~~p~~~~ll~s~s~dg~I~-lwd~~~~~-~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~----- 423 (545)
...+...+++. +++.+. .|.+. -||--... ..........+..+.+.+++..++ ++..|.+..- ...+.
T Consensus 241 f~~v~~~~dG~-~~~vg~-~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l-~g~~G~l~~S-~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGD-YVAVSS-RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWL-LTRGGGLYVS-KGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCC-EEEEEC-CccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEE-EeCCceEEEe-cCCCCccccc
Confidence 34455566653 443443 44433 23321110 112222345578888988866554 4466665443 22222
Q ss_pred EEEEecC--CCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEE
Q 009059 424 CRLKLQG--HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 501 (545)
Q Consensus 424 ~~~~~~~--h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~ 501 (545)
....... ....+..+.|.+++..+++|..|.+.... ..++...............+.+.|.++++ .++.+.+|.|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il 394 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLL 394 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEE
Confidence 1222221 22358999999999999988888666653 34433233222223345678889877765 67777788765
Q ss_pred EE
Q 009059 502 LW 503 (545)
Q Consensus 502 iw 503 (545)
-|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Confidence 54
No 434
>PHA02790 Kelch-like protein; Provisional
Probab=94.44 E-value=3.3 Score=43.87 Aligned_cols=186 Identities=7% Similarity=-0.063 Sum_probs=87.0
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCCeee-eEeccCcccEEEEEEeCCCCcEEEEEcCC--CcEEEEECCCCceeeEE
Q 009059 316 SLSRLATSSADR-----TVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVF 387 (545)
Q Consensus 316 ~~~~l~t~s~dg-----~I~vwd~~~~~~~~-~~~~~h~~~V~~l~~~p~~~~ll~s~s~d--g~I~lwd~~~~~~~~~~ 387 (545)
++.++++|+.++ .+..||..+..... ..+....... +++.. ++.+.+.|+.+ ..+..||..+.+....-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v~~--~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGVPA--NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEEEE--CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 445666776543 46678877654311 1111111111 22222 24666677653 35778887765443322
Q ss_pred eccCCeeE-EEEeCCCCEEEEEECC---CeEEEEECCCCEEEE--EecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcC
Q 009059 388 KCQSGATQ-MRFQPRLGRILAAAIE---NYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG 461 (545)
Q Consensus 388 ~~~~~v~~-l~~sp~~~~l~~~~~d---g~I~i~d~~~~~~~~--~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~ 461 (545)
........ ....-++..+++|+.+ ..+..||.++..-.. .+....... +++ .-++++.+.| |.+.+||..
T Consensus 348 ~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~G--G~~e~ydp~ 423 (480)
T PHA02790 348 SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVG--RNAEFYCES 423 (480)
T ss_pred CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEEC--CceEEecCC
Confidence 22222211 1222344555666654 357788887654322 111111111 222 2356665555 356788886
Q ss_pred CCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-----CeEEEEeCCCCeEE
Q 009059 462 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTL 511 (545)
Q Consensus 462 ~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~ 511 (545)
+.. ...+..+....... .+ ..-+++..++||.+ ..+..||..+++..
T Consensus 424 ~~~-W~~~~~m~~~r~~~-~~-~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~ 475 (480)
T PHA02790 424 SNT-WTLIDDPIYPRDNP-EL-IIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWN 475 (480)
T ss_pred CCc-EeEcCCCCCCcccc-EE-EEECCEEEEECCcCCCcccceEEEEECCCCeEE
Confidence 542 22222222111112 22 22355666666643 36778888777654
No 435
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.32 E-value=6.2 Score=39.28 Aligned_cols=101 Identities=12% Similarity=0.066 Sum_probs=48.3
Q ss_pred CcEEEEEcCC-----CcEEEEECCCCcee---eEEe-ccCCe--eEEEEeCCCCEEEEEEC-----CCeEEEEECCCCEE
Q 009059 361 EDLLCSCDNN-----SEIRYWSINNGSCA---GVFK-CQSGA--TQMRFQPRLGRILAAAI-----ENYISILDVETQVC 424 (545)
Q Consensus 361 ~~ll~s~s~d-----g~I~lwd~~~~~~~---~~~~-~~~~v--~~l~~sp~~~~l~~~~~-----dg~I~i~d~~~~~~ 424 (545)
+.+++.|+.+ ..+..||+.+.+.. ..+. .+... .+++. -++..++.|+. ...+..||+.+.+-
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 4566666644 35667777765531 1111 11111 12222 23355555553 24688899886542
Q ss_pred E--EEecCCCCCEEEEEEcCCCCEEEEEe-CC----cEEEEEcCCC
Q 009059 425 R--LKLQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSG 463 (545)
Q Consensus 425 ~--~~~~~h~~~I~~l~~sp~g~~l~s~s-dg----~I~vwd~~~~ 463 (545)
. ..+... ......+..-++++.+.|+ ++ .+.+||+.+.
T Consensus 152 ~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 152 FELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 2 222211 1111222223566666665 43 3568888764
No 436
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.22 E-value=3.4 Score=45.68 Aligned_cols=78 Identities=28% Similarity=0.379 Sum_probs=54.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEc---------CCCeEE---EEe--------ccCCccEEEEEEcCC---CCEEE
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCT---------ESFTVK---STL--------EEHTQWITDVRFSPS---LSRLA 321 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~---------~~~~~~---~~l--------~~h~~~V~~l~~sp~---~~~l~ 321 (545)
.|..|.++|+|++||..|..|.+.+.=. +.++.. +++ ..+...|..+.|+|. +..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 5888999999999999988665444321 111111 111 134567999999995 57899
Q ss_pred EEeCCCeEEEEECCCCCeeee
Q 009059 322 TSSADRTVRVWDTENPDYSLR 342 (545)
Q Consensus 322 t~s~dg~I~vwd~~~~~~~~~ 342 (545)
.-..|+++|+||+.....+..
T Consensus 166 vLtsdn~lR~y~~~~~~~p~~ 186 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDPQHPWQ 186 (717)
T ss_pred EEecCCEEEEEecCCCCCCeE
Confidence 999999999999986554433
No 437
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.15 E-value=2.1 Score=36.05 Aligned_cols=111 Identities=9% Similarity=0.082 Sum_probs=72.6
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCE--------EEEEecCCCCCEEEEEEcC-----CCCEEEEEeCCcEEEEEcCC
Q 009059 396 MRFQPRLGRILAAAIENYISILDVETQV--------CRLKLQGHKNQVHSVCWNT-----SGEYLASVSDELVRVWSIGS 462 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg~I~i~d~~~~~--------~~~~~~~h~~~I~~l~~sp-----~g~~l~s~sdg~I~vwd~~~ 462 (545)
-.|......|++++..|.|.|++..... .+..+. -...|++|+-.+ ....|+.|+...+..||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 3555566678899999999999876432 233333 456788886543 35789999999999999987
Q ss_pred CCCcceEEEEeeCCCceEEEEEc---CCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 463 GSKGECIHELSCTGNKFHSCVFH---PTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 463 ~~~~~~i~~~~~~~~~v~~~~~s---p~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
... .. ++.-...++++.+- ....-++..+.+..|.-||....+..
T Consensus 83 N~d-~F---yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 83 NSD-LF---YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred Cch-hh---hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 532 11 12223556666553 22234677777778888888776655
No 438
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=5.9 Score=38.02 Aligned_cols=251 Identities=12% Similarity=0.038 Sum_probs=132.8
Q ss_pred eeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC---eEEEEeccCCccEEEEEEcCCCC
Q 009059 242 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~---~~~~~l~~h~~~V~~l~~sp~~~ 318 (545)
.++.|..+.....++..+... +--.++..+ |++..++..|.-+.+.|+.+- .+...+......-..++.+ |+
T Consensus 108 L~IvDIS~P~sP~~~~~lnt~-gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn 182 (370)
T COG5276 108 LRIVDISTPDSPTLIGFLNTD-GYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GN 182 (370)
T ss_pred eEEEeccCCCCcceeccccCC-ceEEEEEec--CCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cC
Confidence 455555555544444444431 223444544 778888876777778887642 3334444444445667775 66
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcc-cEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec--cCCeeE
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQ 395 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~-~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~--~~~v~~ 395 (545)
+-..+..|+-+.|-|+.++..+...-.-..+ .+.++..+++. .++ +-. +.-+.+-|..+.+....+.. ...+.+
T Consensus 183 ~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr-~y~-vvy-~egvlivd~s~~ssp~~~gsyet~~p~~ 259 (370)
T COG5276 183 YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNR-AYL-VVY-DEGVLIVDVSGPSSPTVFGSYETSNPVS 259 (370)
T ss_pred eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCe-eEE-EEc-ccceEEEecCCCCCceEeeccccCCccc
Confidence 7778889999999999887654432222223 67777777653 233 333 34477777776553333321 122222
Q ss_pred E-EEeCCCCEEEEEECCCeEEEEECCCCEEE---EEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEE
Q 009059 396 M-RFQPRLGRILAAAIENYISILDVETQVCR---LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 396 l-~~sp~~~~l~~~~~dg~I~i~d~~~~~~~---~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~ 471 (545)
+ .+.-.+++..++..+..+-+.|..+.... ..+......-..+.. .+.++..+..+...+-+....+. ...
T Consensus 260 ~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn~g~vV~~s~~s~---m~~ 334 (370)
T COG5276 260 ISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKNTGAVVDASPPSM---MDK 334 (370)
T ss_pred ccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEeccCCceEEEeCCChhh---ccc
Confidence 2 33334566667766766777776543211 111111112222322 24444444433445555543311 111
Q ss_pred EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 472 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 472 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
..+....+.++..+-+.+.+.....++.+.||+.
T Consensus 335 ~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 335 RPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred ccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 1122233445555555557778888888888875
No 439
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.01 E-value=5.7 Score=37.73 Aligned_cols=212 Identities=10% Similarity=0.051 Sum_probs=130.3
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeE
Q 009059 307 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 386 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~ 386 (545)
.-..|+-.+||..-+++...+.|--.|-.+++. ...-.+....-..|..-|++...++=. ..-|.-.|-++.+..+.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev-~~ypLg~Ga~Phgiv~gpdg~~Witd~--~~aI~R~dpkt~evt~f 139 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEV-ETYPLGSGASPHGIVVGPDGSAWITDT--GLAIGRLDPKTLEVTRF 139 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCce-EEEecCCCCCCceEEECCCCCeeEecC--cceeEEecCcccceEEe
Confidence 345677888998888888888888888888775 333334455667788888876555222 22466666665554321
Q ss_pred -Ee---ccCCeeEEEEeCCCCEEEEEEC---------CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-C
Q 009059 387 -FK---CQSGATQMRFQPRLGRILAAAI---------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 452 (545)
Q Consensus 387 -~~---~~~~v~~l~~sp~~~~l~~~~~---------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-d 452 (545)
+. .........|.+.|...+++.. .+.|++|+.. .....+.||..|+|...++.- +
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslag 209 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAG 209 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEeccc
Confidence 11 2345778889999877777653 1234444433 234557788999998877766 7
Q ss_pred CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE--EeccCCCCeeEEEEeCCCC
Q 009059 453 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNG 530 (545)
Q Consensus 453 g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd~~ 530 (545)
+.|...|..++.. +.+..-.........+--+|.++.-++....+.++.||-...... .+.+....-.++.+...++
T Consensus 210 naiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr 288 (353)
T COG4257 210 NAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR 288 (353)
T ss_pred cceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc
Confidence 7787778766532 222222222344555666777876677666778888887665544 3444444445555544444
Q ss_pred EE
Q 009059 531 MV 532 (545)
Q Consensus 531 ~l 532 (545)
..
T Consensus 289 VW 290 (353)
T COG4257 289 VW 290 (353)
T ss_pred EE
Confidence 33
No 440
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.90 E-value=3.1 Score=44.88 Aligned_cols=122 Identities=11% Similarity=0.114 Sum_probs=78.5
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec-cCCccEEEEEEc--CCCCEEEEEeCCCeEEE
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFS--PSLSRLATSSADRTVRV 331 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~-~h~~~V~~l~~s--p~~~~l~t~s~dg~I~v 331 (545)
....+...-..+.-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|. |++..+++.+....|.+
T Consensus 21 ~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 21 LTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLL 100 (631)
T ss_pred EEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence 334444444555666666656655555555689999999877554332 457789999995 58889999999999999
Q ss_pred EECC-----CCC---eeeeE--eccCc-ccEEEEEEeCCCCcEEEEEcCCCcEEEEECC
Q 009059 332 WDTE-----NPD---YSLRT--FTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379 (545)
Q Consensus 332 wd~~-----~~~---~~~~~--~~~h~-~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~ 379 (545)
|.-. +.. ..++. +..|+ .+|.+..|.++|. +++.+ +..+.|+|-.
T Consensus 101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDKW 156 (631)
T ss_pred EEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEECCC
Confidence 8532 111 11221 23344 5799999999874 43233 4578888743
No 441
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.77 E-value=4.2 Score=37.30 Aligned_cols=139 Identities=22% Similarity=0.283 Sum_probs=80.4
Q ss_pred CEEEEEeCCCeEEEEECCCCCeee-eEeccCcccEEEEEEeCCCCcEEEEEcCC--C---cEEEE---ECC--CCceee-
Q 009059 318 SRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN--S---EIRYW---SIN--NGSCAG- 385 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~-~~~~~h~~~V~~l~~~p~~~~ll~s~s~d--g---~I~lw---d~~--~~~~~~- 385 (545)
..|+.+...+.|.+|++......+ ..|. .-+.|..+.++..|++++..=... . .+|+| +.. ....+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555667789999998444333 3444 458899999999988777432211 2 45664 222 111111
Q ss_pred ----------------------EEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE------EEEecC----C-C
Q 009059 386 ----------------------VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC------RLKLQG----H-K 432 (545)
Q Consensus 386 ----------------------~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~------~~~~~~----h-~ 432 (545)
.+.....+.+++..|-.+.|++|+ ++.+.+|.+..... +..+.. | .
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 112234567888888777777665 46777887654332 111111 1 1
Q ss_pred C-CEEEEEEcCCCCEEEEEeCCcEEEEEc
Q 009059 433 N-QVHSVCWNTSGEYLASVSDELVRVWSI 460 (545)
Q Consensus 433 ~-~I~~l~~sp~g~~l~s~sdg~I~vwd~ 460 (545)
+ .+..+++ -+.|+|..++..++++.+
T Consensus 187 ~~~p~~v~i--c~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAI--CEGYIAVMSDLEVLVLKL 213 (215)
T ss_pred CceEEEEEE--EeeEEEEecCCEEEEEEE
Confidence 1 2344444 367888888888888765
No 442
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=93.72 E-value=6.5 Score=41.14 Aligned_cols=267 Identities=13% Similarity=0.021 Sum_probs=131.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCC-ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 342 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~-~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~ 342 (545)
.+|..+.+...|. |..|+.|| +..||..+++.+..-.... .+|..+.-.-.+ .|..|+.+| |.+.+.+.....-.
T Consensus 165 ~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn~ 240 (671)
T COG3292 165 TPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASNW 240 (671)
T ss_pred ccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhcccccc
Confidence 4577888888874 45566555 6778877777765543332 556666555444 577777776 67766654222111
Q ss_pred EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee-eEEecc---CCeeEEEEeCCCCEEEEEECCCeEEEEE
Q 009059 343 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKCQ---SGATQMRFQPRLGRILAAAIENYISILD 418 (545)
Q Consensus 343 ~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~-~~~~~~---~~v~~l~~sp~~~~l~~~~~dg~I~i~d 418 (545)
...-..+.|..+.-..+|. +..|+.+|-.+ +........ ...+.+ +.+..+....+ +.+.+++.++.+++-+
T Consensus 241 ~~~lp~~~I~ll~qD~qG~--lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~d-GsLWv~t~~giv~~~~ 316 (671)
T COG3292 241 GPMLPSGNILLLVQDAQGE--LWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTD-GSLWVGTYGGIVRYLT 316 (671)
T ss_pred CCCCcchheeeeecccCCC--EEEeeccccee-EecCCCCccccccccCCccccccceeeccC-CCEeeeccCceEEEec
Confidence 1111233455444444432 33455555333 233322221 111111 23445555555 5577777777766654
Q ss_pred CCCCEEEEEecCCCC-CEEEEEEcC---CCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEE
Q 009059 419 VETQVCRLKLQGHKN-QVHSVCWNT---SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 494 (545)
Q Consensus 419 ~~~~~~~~~~~~h~~-~I~~l~~sp---~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~ 494 (545)
.+- .....+....+ .+-.++..| +......-+-+.+.+-+-.++.....++. .....|+.+++..++. +..+
T Consensus 317 a~w-~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q--~Rg~nit~~~~d~~g~-lWlg 392 (671)
T COG3292 317 ADW-KRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQ--LRGMNITTTLEDSRGR-LWLG 392 (671)
T ss_pred chh-hheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeee--ccccccchhhhccCCc-EEEE
Confidence 431 11111111111 111111112 01111111122233333333321112222 2234566667776554 7777
Q ss_pred EcCCeEEEEeCCC-CeEEEec--cCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 495 GCYETLELWNMTE-NKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 495 ~~dg~I~iwd~~~-~~~~~~~--~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
+..+.+-.|+.++ +-.+... ...+.|.+|-=.|+++ |..|+.+|.++.
T Consensus 393 s~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 393 SMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred ecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 7776677777766 3333221 2346788888788888 777888887663
No 443
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.62 E-value=12 Score=40.47 Aligned_cols=175 Identities=11% Similarity=0.025 Sum_probs=85.0
Q ss_pred CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee--eEeccCcccEEEEEEeCCCC
Q 009059 284 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKE 361 (545)
Q Consensus 284 dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~--~~~~~h~~~V~~l~~~p~~~ 361 (545)
--.|+||++. |.++..+.-....+..+.|+.+. .|++...+|+++||++-...... .-+......|..+.|..+|
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G- 139 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG- 139 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc-
Confidence 3468888864 55554443333378889999765 56666799999999986432211 0011122334444444444
Q ss_pred cEEEEEcCCCcEEEEECCCCceeeEEec-cC---CeeEEEEeCCCC---EEEEEECCCeEEEEECCCC-EEEEEecCCCC
Q 009059 362 DLLCSCDNNSEIRYWSINNGSCAGVFKC-QS---GATQMRFQPRLG---RILAAAIENYISILDVETQ-VCRLKLQGHKN 433 (545)
Q Consensus 362 ~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~---~v~~l~~sp~~~---~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~ 433 (545)
++ .-..+|.+.+-+-......+..+. +. ...|-...+++. .++-....-...++...+. .....+.....
T Consensus 140 -Va-vlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 140 -VA-VLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred -eE-EEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc
Confidence 22 222244444432211111222111 00 112222222211 1111110001112222211 11122222346
Q ss_pred CEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q 009059 434 QVHSVCWNTSGEYLASVS-DELVRVWSIGSG 463 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~ 463 (545)
.+..+..||+.++|+.-. .|.|.+-+....
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 788899999999999888 888888887654
No 444
>PLN02193 nitrile-specifier protein
Probab=93.60 E-value=11 Score=39.84 Aligned_cols=191 Identities=6% Similarity=-0.021 Sum_probs=90.0
Q ss_pred CCCEEEEEeCC-------CeEEEEECCCCCeeeeEecc-Ccc--c-EEEEEEeCCCCcEEEEEcCC-----CcEEEEECC
Q 009059 316 SLSRLATSSAD-------RTVRVWDTENPDYSLRTFTG-HST--T-VMSLDFHPSKEDLLCSCDNN-----SEIRYWSIN 379 (545)
Q Consensus 316 ~~~~l~t~s~d-------g~I~vwd~~~~~~~~~~~~~-h~~--~-V~~l~~~p~~~~ll~s~s~d-----g~I~lwd~~ 379 (545)
++.+++.|+.+ ..+.+||+.+.........+ ... . -.+++.. +..+++.|+.+ ..+..||+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECC
Confidence 34556666643 24677888765542211111 000 0 1112222 34566666654 358889988
Q ss_pred CCceeeEEec---cCC--eeEEEEeCCCCEEEEEECC-----CeEEEEECCCCEEEEEec-----CCCCCEEEEEEcCCC
Q 009059 380 NGSCAGVFKC---QSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQ-----GHKNQVHSVCWNTSG 444 (545)
Q Consensus 380 ~~~~~~~~~~---~~~--v~~l~~sp~~~~l~~~~~d-----g~I~i~d~~~~~~~~~~~-----~h~~~I~~l~~sp~g 444 (545)
+.+....... +.+ -.++.. -++..++.++.+ ..+..||+.+.+-...-. ..... ..++. -++
T Consensus 253 t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~-~~g 329 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEV-VQG 329 (470)
T ss_pred CCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEE-ECC
Confidence 7654432221 111 112222 233555556543 357788887764322110 01111 12222 256
Q ss_pred CEEEEEe-C----CcEEEEEcCCCCCcceEEEEe--eCCCceEEEEEcCCCCEEEEEEcC--------------CeEEEE
Q 009059 445 EYLASVS-D----ELVRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLLVIGCY--------------ETLELW 503 (545)
Q Consensus 445 ~~l~s~s-d----g~I~vwd~~~~~~~~~i~~~~--~~~~~v~~~~~sp~~~~l~~~~~d--------------g~I~iw 503 (545)
++++.++ + ..+.+||+.+.. ...+.... .......+++ .-+++.++.|+.. ..+.+|
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccceeccEEEE
Confidence 6666655 4 368899987652 12221110 0011112222 2345666666642 258899
Q ss_pred eCCCCeEEEe
Q 009059 504 NMTENKTLTL 513 (545)
Q Consensus 504 d~~~~~~~~~ 513 (545)
|+.+.+...+
T Consensus 408 D~~t~~W~~~ 417 (470)
T PLN02193 408 DTETLQWERL 417 (470)
T ss_pred EcCcCEEEEc
Confidence 9988876643
No 445
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=3.2 Score=37.73 Aligned_cols=176 Identities=13% Similarity=0.071 Sum_probs=96.6
Q ss_pred CCCEEEEEeC--CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCe
Q 009059 316 SLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA 393 (545)
Q Consensus 316 ~~~~l~t~s~--dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v 393 (545)
++.++.+.+. ...|++||+.+++.....-.. ...+..=-...-++.+....-.+|.-..+|.++.+++..+..++.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 4556666554 347999999987763322221 1222222222223455555566888889999999999988877776
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEE----ecC-CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcc
Q 009059 394 TQMRFQPRLGRILAAAIENYISILDVETQVCRLK----LQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 467 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~----~~~-h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~ 467 (545)
..++.. +..++.+.....+..-|.++-....+ +.+ .-..++.+.|- +|.+.|-.- +..|...+..+++...
T Consensus 134 WgLt~d--~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTSD--DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeecC--CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 666544 34577766667788777765433222 222 11233344442 454444443 4455555555542111
Q ss_pred e---------EEEEeeCCCceEEEEEcCCCCEEEEEE
Q 009059 468 C---------IHELSCTGNKFHSCVFHPTFPSLLVIG 495 (545)
Q Consensus 468 ~---------i~~~~~~~~~v~~~~~sp~~~~l~~~~ 495 (545)
. +..-..+.+-.+.+++.|+...++..+
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 1 111112344567888988885444443
No 446
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.53 E-value=0.051 Score=58.68 Aligned_cols=116 Identities=11% Similarity=0.151 Sum_probs=69.3
Q ss_pred eecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcC--CCeEE-----EEeccCCccEEEEEEcC---CCCEEEEEeCC
Q 009059 258 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE--SFTVK-----STLEEHTQWITDVRFSP---SLSRLATSSAD 326 (545)
Q Consensus 258 ~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~--~~~~~-----~~l~~h~~~V~~l~~sp---~~~~l~t~s~d 326 (545)
.+++..+.|-.++|-. +...++ -.-|.+.||+++ .|+.. .........+.-|.|.| +.-++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 4566777888888854 222222 223678899875 23322 22222334445566655 56778888888
Q ss_pred CeEEEEECCCCCeeeeEeccCcccEEEEEE-----------eCCCCcEEEEEcCCCcEEEEEC
Q 009059 327 RTVRVWDTENPDYSLRTFTGHSTTVMSLDF-----------HPSKEDLLCSCDNNSEIRYWSI 378 (545)
Q Consensus 327 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~-----------~p~~~~ll~s~s~dg~I~lwd~ 378 (545)
++|++..+.... ...+.+|...+..++| +|||. .++....||.+++|.+
T Consensus 205 ~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 205 GEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQI 264 (1283)
T ss_pred CceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeee
Confidence 999998876543 2445567776666654 56654 3445555777666654
No 447
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.41 E-value=10 Score=38.60 Aligned_cols=150 Identities=9% Similarity=0.058 Sum_probs=87.1
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccC--CccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCc-cc
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TT 350 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h--~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~-~~ 350 (545)
+++ +..+..+|.|.-.|.++++.+.....- ...+.+-.+..+|+ |+.++.++.+..+|..++.. +..+.... ..
T Consensus 68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~-~W~~~~~~~~~ 144 (370)
T COG1520 68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTL-VWSRNVGGSPY 144 (370)
T ss_pred CCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcE-EEEEecCCCeE
Confidence 454 444467888888888887766433221 12233333333565 77888899889999877765 44433333 11
Q ss_pred EEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC-eeEEE--EeCCCCEEEEEEC--CCeEEEEECCCCEEE
Q 009059 351 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMR--FQPRLGRILAAAI--ENYISILDVETQVCR 425 (545)
Q Consensus 351 V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~-v~~l~--~sp~~~~l~~~~~--dg~I~i~d~~~~~~~ 425 (545)
+..-....+ ..++.++.++.+...|..+++.......... -.... .....+.++.+.. ++.+.-+|.+++...
T Consensus 145 ~~~~~v~~~--~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 145 YASPPVVGD--GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EecCcEEcC--cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEe
Confidence 222222223 2343454689999999998988777654332 00000 1123355666665 667888899888776
Q ss_pred EEe
Q 009059 426 LKL 428 (545)
Q Consensus 426 ~~~ 428 (545)
...
T Consensus 223 w~~ 225 (370)
T COG1520 223 WSQ 225 (370)
T ss_pred eee
Confidence 653
No 448
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.34 E-value=0.0088 Score=60.18 Aligned_cols=142 Identities=15% Similarity=0.278 Sum_probs=100.1
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEE
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~ 470 (545)
.....|.+.+..+++++.+..|..||-.... +.... ..+....++|+.++..++... .+.+.+||+.+... ..+
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~-~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqL- 112 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQV-ILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQL- 112 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcce-ecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHH-
Confidence 4456788888889999999999999865432 22222 345567788988887766655 77999999976422 111
Q ss_pred EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEecc-CCCCeeEEEEeCCCCEEEEEeCCCc
Q 009059 471 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-HDKLVSSLAASTVNGMVASASHDKC 540 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~-h~~~V~~l~~spd~~~las~s~Dg~ 540 (545)
+.. ....-.-+.|++.+..++.+...+.+.||+..+.+.....+ |...+++++|.+.+ +.+.++.|..
T Consensus 113 E~g-g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~ 181 (615)
T KOG2247|consen 113 ESG-GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNT 181 (615)
T ss_pred hcc-CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHH
Confidence 111 11111226899999999999999999999998887775555 99999999999876 4555555543
No 449
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.28 E-value=2.9 Score=37.93 Aligned_cols=169 Identities=8% Similarity=-0.019 Sum_probs=90.4
Q ss_pred cEEEEEcC--CCcEEEEECCCCceeeEEeccC-CeeEEEEeCCCCEEEEEE-CCCeEEEEECCCCEEEEEecCCCCCEEE
Q 009059 362 DLLCSCDN--NSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHS 437 (545)
Q Consensus 362 ~ll~s~s~--dg~I~lwd~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~~~I~~ 437 (545)
.++.+.+. ...|++||+.+++.+....... .+..=-...-+..+..-+ .+|.-.+||.++-+++..+. ..+.=..
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWg 135 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWG 135 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCccee
Confidence 55555543 4479999999998887665541 222111222234444444 58889999999887766554 3344455
Q ss_pred EEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCce---EEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEe
Q 009059 438 VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF---HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL 513 (545)
Q Consensus 438 l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v---~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~ 513 (545)
++. |++-|+.+. ..+++.-|..+......+... ..+.+| +.+.|- +|...+-.-....|...|..+++++..
T Consensus 136 Lt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT-~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~w 211 (262)
T COG3823 136 LTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVT-DDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAW 211 (262)
T ss_pred eec--CCcceEeeCCceEEEecCHHHhhhcceEEEE-ECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEE
Confidence 653 444455444 446777676554322222111 111122 222222 333333333344455556666655421
Q ss_pred -------------ccCCCCeeEEEEeCCC-CEEEEE
Q 009059 514 -------------SAHDKLVSSLAASTVN-GMVASA 535 (545)
Q Consensus 514 -------------~~h~~~V~~l~~spd~-~~las~ 535 (545)
..|....+.|++.|++ ++++||
T Consensus 212 idlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 212 IDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 2355678899999988 455665
No 450
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.27 E-value=1.3 Score=45.31 Aligned_cols=142 Identities=13% Similarity=0.148 Sum_probs=91.6
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCC-------cEEEEEcCCCcEEEEECCC-CceeeE
Q 009059 316 SLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-------DLLCSCDNNSEIRYWSINN-GSCAGV 386 (545)
Q Consensus 316 ~~~~l~-t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~-------~ll~s~s~dg~I~lwd~~~-~~~~~~ 386 (545)
+..+|+ .+.....+.-.|++.++. +..+.-|... -+.|.|... .-+ .|-.+..|.-.|.+- +..+..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkv-veeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKV-VEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeeccccee-eeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceee
Confidence 444444 344455666677777764 6666666544 456666431 233 343455566666653 333332
Q ss_pred EeccCCeeEEEEe----CCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcC
Q 009059 387 FKCQSGATQMRFQ----PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG 461 (545)
Q Consensus 387 ~~~~~~v~~l~~s----p~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~ 461 (545)
......++.-.|+ -..+++++++..|.|++||--.......+.+-...|..|....+|++|++.+...+.+-|++
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 2222222222222 34589999999999999997666555667777889999999999999999998889998875
No 451
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.26 E-value=1.5 Score=44.94 Aligned_cols=135 Identities=13% Similarity=0.072 Sum_probs=88.8
Q ss_pred CCCEEEE-EECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCC--------CEEEEEeCCcEEEEEcCCCCCcceEEE
Q 009059 401 RLGRILA-AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG--------EYLASVSDELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 401 ~~~~l~~-~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g--------~~l~s~sdg~I~vwd~~~~~~~~~i~~ 471 (545)
+...|+. +.....++-.|++.|+.+..+..|..- -+.|.|+. ..|+.-++..|.-.|.+-......+..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 3344433 444678999999999999998877665 46677743 456666677777677665432222222
Q ss_pred Eee--CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 472 LSC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 472 ~~~--~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
.+. ..+...+..- ....++++++..|.|++||.-..+-. .+.+....|..+..+.+|++|++.+..
T Consensus 556 sKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 556 SKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred ehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 221 1222333333 34457999999999999997554444 566778889999999999987776654
No 452
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.23 E-value=0.062 Score=58.06 Aligned_cols=195 Identities=14% Similarity=0.128 Sum_probs=96.7
Q ss_pred CCcEEEEEcCCCe-EEEEeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCC--CC----eeeeEeccCcccEEEEE
Q 009059 284 DKKAVLWCTESFT-VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN--PD----YSLRTFTGHSTTVMSLD 355 (545)
Q Consensus 284 dg~I~lwd~~~~~-~~~~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~--~~----~~~~~~~~h~~~V~~l~ 355 (545)
.+.|++-+.++.- ....+++..+.|-.+.|-. +...++ -.-|...|||+.- ++ ..+.........+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 4567777665422 1233467778888888854 222222 2346788998752 22 12223333334445555
Q ss_pred EeCC--CCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCC
Q 009059 356 FHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 433 (545)
Q Consensus 356 ~~p~--~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~ 433 (545)
|.|- .+..++.+..+++|++.++.+...-....|...+..++|...| ++...
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g-~~~l~------------------------- 241 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEG-VLKLA------------------------- 241 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhc-hhhhe-------------------------
Confidence 5541 1355667778889998877654331111133334444443331 11100
Q ss_pred CEEEEEEcCCCCEEEEEe-CCcEEEEEcCC--CCCcceEEEEeeCCCceE-EEEEcCCC---------CEEEEEEc-CCe
Q 009059 434 QVHSVCWNTSGEYLASVS-DELVRVWSIGS--GSKGECIHELSCTGNKFH-SCVFHPTF---------PSLLVIGC-YET 499 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~--~~~~~~i~~~~~~~~~v~-~~~~sp~~---------~~l~~~~~-dg~ 499 (545)
..+|||..|+... ||.+++|-+.- .....|++..+.|...-. |..++... .++++++. +..
T Consensus 242 -----~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre 316 (1283)
T KOG1916|consen 242 -----SLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNRE 316 (1283)
T ss_pred -----eeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcc
Confidence 0566666666665 66655554321 112245555555553222 22222211 12333333 337
Q ss_pred EEEEeCCCCeEE
Q 009059 500 LELWNMTENKTL 511 (545)
Q Consensus 500 I~iwd~~~~~~~ 511 (545)
+++|.....+++
T Consensus 317 ~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 317 EKFWAEAPWQCL 328 (1283)
T ss_pred eeEeeccchhhh
Confidence 889987776665
No 453
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.21 E-value=1.5 Score=44.25 Aligned_cols=103 Identities=11% Similarity=0.138 Sum_probs=70.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC-cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC--C
Q 009059 431 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM--T 506 (545)
Q Consensus 431 h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~-~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~--~ 506 (545)
..++|.+|.|++|.+.||+-- |..|.+++....+. ....++.+.....|...+|+.+. -++.....| +.+|-. .
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~-e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST-EIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe-eEEEEecCC-eEEEEEchh
Confidence 467999999999999999988 89999999743221 12223333445568889998774 466666655 445543 3
Q ss_pred CCeEEEeccCCCCeeEEEEeCCCCEEEEE
Q 009059 507 ENKTLTLSAHDKLVSSLAASTVNGMVASA 535 (545)
Q Consensus 507 ~~~~~~~~~h~~~V~~l~~spd~~~las~ 535 (545)
.........|...|+-..|.++.+.+.-+
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeee
Confidence 33333555788888888899888754443
No 454
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.18 E-value=0.41 Score=31.47 Aligned_cols=31 Identities=39% Similarity=0.623 Sum_probs=26.2
Q ss_pred CCeEEEEEcCC-C--CEEEEEeCCCcEEEEEcCC
Q 009059 264 SKVESCHFSPD-G--KLLATGGHDKKAVLWCTES 294 (545)
Q Consensus 264 ~~V~~l~~spd-g--~~latg~~dg~I~lwd~~~ 294 (545)
+.|.+|+|||+ + ++||.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5899888889999999984
No 455
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.15 E-value=18 Score=40.78 Aligned_cols=127 Identities=13% Similarity=0.093 Sum_probs=71.3
Q ss_pred CCeEEEEECC-CCEEEEEec--CCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCC
Q 009059 411 ENYISILDVE-TQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 487 (545)
Q Consensus 411 dg~I~i~d~~-~~~~~~~~~--~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~ 487 (545)
+|.++.|++- .++.+.-+. .-.+.|.++ .|...++.+|-...+++||+...+... ..+++.....|..+.+ .
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai--~~f~~~~LagvG~~l~~YdlG~K~lLR-k~e~k~~p~~Is~iqt--~ 985 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAI--CPFQGRVLAGVGRFLRLYDLGKKKLLR-KCELKFIPNRISSIQT--Y 985 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccceEE--eccCCEEEEecccEEEEeeCChHHHHh-hhhhccCceEEEEEee--c
Confidence 3446666653 233222111 123344444 477778888888899999997653211 1112222344555554 4
Q ss_pred CCEEEEEEcCCeEE--EEeCCCCeEEEecc--CCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 488 FPSLLVIGCYETLE--LWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 488 ~~~l~~~~~dg~I~--iwd~~~~~~~~~~~--h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
+..+++|.....+. .|+-.+++.+.+.. -...|+++.+- |...+|.|..=|.+.+
T Consensus 986 ~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 986 GARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAV 1044 (1205)
T ss_pred ceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEE
Confidence 55688888777554 56666677665543 33457666654 4456777766666554
No 456
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.08 E-value=12 Score=38.53 Aligned_cols=142 Identities=13% Similarity=0.164 Sum_probs=84.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCCee---eeEeccCcccEEEEEEeC---C-CCcEEEEEcCCCcEEEEECCC--Cc-----
Q 009059 317 LSRLATSSADRTVRVWDTENPDYS---LRTFTGHSTTVMSLDFHP---S-KEDLLCSCDNNSEIRYWSINN--GS----- 382 (545)
Q Consensus 317 ~~~l~t~s~dg~I~vwd~~~~~~~---~~~~~~h~~~V~~l~~~p---~-~~~ll~s~s~dg~I~lwd~~~--~~----- 382 (545)
...|++|+..|.++||+....... +..-..-..+|..+..-. . ....||. =.-..+.+|.+.. +.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 458999999999999998654421 111122456777776532 2 2233433 2355677777631 11
Q ss_pred -----eeeEEeccCCeeEEEEeCC-----CCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-
Q 009059 383 -----CAGVFKCQSGATQMRFQPR-----LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 451 (545)
Q Consensus 383 -----~~~~~~~~~~v~~l~~sp~-----~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s- 451 (545)
.+...........+++-|- ...+.+-+.||.+.+|+-+.-.....+.. ---.-.++|.+.-..+++++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 1112222334455555442 24566778899999999887655554443 22234466777777777777
Q ss_pred CCcEEEEEc
Q 009059 452 DELVRVWSI 460 (545)
Q Consensus 452 dg~I~vwd~ 460 (545)
+..+..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 678888875
No 457
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.06 E-value=0.024 Score=57.12 Aligned_cols=148 Identities=12% Similarity=0.121 Sum_probs=105.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee-E
Q 009059 308 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-V 386 (545)
Q Consensus 308 V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~-~ 386 (545)
.....|.+.+.-++.++.+..+..||-.... ..-...++....++|..+++.+++.+...+.+.+||+.+..... .
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~---~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQV---ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcce---ecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 3445677777778888888889999865322 11122356677889998888888888889999999997543211 1
Q ss_pred EeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEE
Q 009059 387 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVW 458 (545)
Q Consensus 387 ~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vw 458 (545)
+.....-.-+.|++....++.+...|.+.|++..+.+.+.....|...+++++|.+.+..+..++|..+.+-
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVT 185 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHh
Confidence 111111222678888888888888999999999888777666669999999999998876665555544433
No 458
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.95 E-value=4.8 Score=43.93 Aligned_cols=110 Identities=8% Similarity=0.123 Sum_probs=68.4
Q ss_pred EEEEEEeC-CCCcEEEEEcCCCcEEEEECCC-------C-------------ceeeEEeccCCeeEEEEe--CCCCEEEE
Q 009059 351 VMSLDFHP-SKEDLLCSCDNNSEIRYWSINN-------G-------------SCAGVFKCQSGATQMRFQ--PRLGRILA 407 (545)
Q Consensus 351 V~~l~~~p-~~~~ll~s~s~dg~I~lwd~~~-------~-------------~~~~~~~~~~~v~~l~~s--p~~~~l~~ 407 (545)
|+.|.... .+..+|+.|.+||.|.+|.+++ . ++...+.....+..++++ .....|++
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 44444332 2456777899999999996531 0 122344455668888888 66566666
Q ss_pred EECCCeEEEEECCC--CEEEE-EecCCCCCEEEEEEcCCC-----C-EEEEEe-CCcEEEEEc
Q 009059 408 AAIENYISILDVET--QVCRL-KLQGHKNQVHSVCWNTSG-----E-YLASVS-DELVRVWSI 460 (545)
Q Consensus 408 ~~~dg~I~i~d~~~--~~~~~-~~~~h~~~I~~l~~sp~g-----~-~l~s~s-dg~I~vwd~ 460 (545)
++....|.||-... .+... .-..|...|.+|+|-++. . +|++++ .|.+.+|++
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 66667776664433 11111 111256688999997643 2 677777 998888877
No 459
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.83 E-value=0.85 Score=42.60 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=55.7
Q ss_pred EeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEe-------c-------CCCCCEEEEEEcCCCCEEEEEeC
Q 009059 387 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-------Q-------GHKNQVHSVCWNTSGEYLASVSD 452 (545)
Q Consensus 387 ~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~-------~-------~h~~~I~~l~~sp~g~~l~s~sd 452 (545)
+.....+.. +..++.++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-++
T Consensus 9 i~Lgs~~~~--l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn 86 (219)
T PF07569_consen 9 IVLGSPVSF--LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN 86 (219)
T ss_pred EecCCceEE--EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC
Confidence 333344433 4456788999999999999999998765432 1 24567889999999998888888
Q ss_pred CcEEEEEcCC
Q 009059 453 ELVRVWSIGS 462 (545)
Q Consensus 453 g~I~vwd~~~ 462 (545)
|..+.|+..-
T Consensus 87 g~~y~y~~~L 96 (219)
T PF07569_consen 87 GDSYSYSPDL 96 (219)
T ss_pred CCEEEecccc
Confidence 8899998654
No 460
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.79 E-value=3.9 Score=44.08 Aligned_cols=171 Identities=12% Similarity=0.163 Sum_probs=84.8
Q ss_pred CCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEE-Ee--cCCCCCEEEEEEcCCCC
Q 009059 370 NSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL-KL--QGHKNQVHSVCWNTSGE 445 (545)
Q Consensus 370 dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~-~~--~~h~~~I~~l~~sp~g~ 445 (545)
--.|+||++. |..+..+. .+..+..+.|+.+ ..|++...+|.+++|++-...... .. ......|..+.+..+|-
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 3457788775 44443332 2347888999987 789999999999999986432221 11 12233455555555665
Q ss_pred EEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEE-EcCCCC--EEEEEEcCCeEEEEeCCCC--eEEEeccCCCCe
Q 009059 446 YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV-FHPTFP--SLLVIGCYETLELWNMTEN--KTLTLSAHDKLV 520 (545)
Q Consensus 446 ~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~-~sp~~~--~l~~~~~dg~I~iwd~~~~--~~~~~~~h~~~V 520 (545)
.+.+.++..+.+.++..... .....+....-...+-. +.|... .++-....-...++-..+. ....+......+
T Consensus 141 avlt~~g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~ 219 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSV 219 (829)
T ss_pred EEEecCCcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceE
Confidence 55555454555555443210 00111111111111111 112111 1111110001112222222 111222223567
Q ss_pred eEEEEeCCCCEEEEEeCCCcEEE
Q 009059 521 SSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 521 ~~l~~spd~~~las~s~Dg~I~i 543 (545)
..+..||+.++|+--..+|.|.+
T Consensus 220 ~ki~VS~n~~~laLyt~~G~i~~ 242 (829)
T KOG2280|consen 220 VKISVSPNRRFLALYTETGKIWV 242 (829)
T ss_pred EEEEEcCCcceEEEEecCCcEEE
Confidence 78888999998888888887765
No 461
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=92.75 E-value=0.081 Score=59.70 Aligned_cols=8 Identities=38% Similarity=0.410 Sum_probs=3.6
Q ss_pred cCCCcccc
Q 009059 26 NSRNMGLA 33 (545)
Q Consensus 26 ~~~~~~~~ 33 (545)
++.+|--+
T Consensus 2039 ~~q~m~~~ 2046 (2220)
T KOG3598|consen 2039 MNQNMGGM 2046 (2220)
T ss_pred cccchhhh
Confidence 44554433
No 462
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.62 E-value=20 Score=39.86 Aligned_cols=93 Identities=14% Similarity=0.173 Sum_probs=50.6
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 385 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~ 385 (545)
-.|..|.++++|++|+..+..| |.|-.+...-.....+.+-...|.|-.+.-+ ..++ ..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~-~~~~-~~------------------ 143 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVD-ERFF-TS------------------ 143 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEec-hhhc-cC------------------
Confidence 4588899999999999988766 4444443211001122222233333332211 1122 11
Q ss_pred EEeccCCeeEEEEeCC---CCEEEEEECCCeEEEEECCC
Q 009059 386 VFKCQSGATQMRFQPR---LGRILAAAIENYISILDVET 421 (545)
Q Consensus 386 ~~~~~~~v~~l~~sp~---~~~l~~~~~dg~I~i~d~~~ 421 (545)
.....|..+.|+|. +..|++-+.|+.+++||+..
T Consensus 144 --~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 144 --NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred --CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 01134566777775 46777777788888887754
No 463
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.58 E-value=8.1 Score=35.50 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=42.0
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCC--CEEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVET--QVCRLKLQGHKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~--~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s 451 (545)
...++.... +.|+++.....|.+|++.. ...+..|.. -+.|..+.++..|+||++-.
T Consensus 20 P~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 20 PTAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred cceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEE
Confidence 334444332 5666668888999999983 355666663 48899999999999999976
No 464
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.55 E-value=1.4 Score=49.33 Aligned_cols=141 Identities=11% Similarity=0.020 Sum_probs=86.6
Q ss_pred CeeEEEEeCCCCEEEEEEC--CCeEEEEECCCCEEE-----EEecC------CCCCEEEEEEcCCCC--EEEEEeCCcEE
Q 009059 392 GATQMRFQPRLGRILAAAI--ENYISILDVETQVCR-----LKLQG------HKNQVHSVCWNTSGE--YLASVSDELVR 456 (545)
Q Consensus 392 ~v~~l~~sp~~~~l~~~~~--dg~I~i~d~~~~~~~-----~~~~~------h~~~I~~l~~sp~g~--~l~s~sdg~I~ 456 (545)
.+..+...+++...++... +-.|+.||+++-..- .-+.. ......++.|.|.-. .++.-.|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 3455555666555554444 337889998753211 11111 223556788888643 33334488888
Q ss_pred EEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEec----cCCCCeeEEEEeCCCCEE
Q 009059 457 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS----AHDKLVSSLAASTVNGMV 532 (545)
Q Consensus 457 vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~----~h~~~V~~l~~spd~~~l 532 (545)
+..+.-.. ..+.. -......++++|+|.|+.+++|-..|++.-|...-.....+. .....|.+|+|-....+|
T Consensus 182 V~~~~~~~--~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLA--QNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhh--hhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEE
Confidence 88765321 11112 124567899999999999999999999988865433222221 124789999998777776
Q ss_pred EEE
Q 009059 533 ASA 535 (545)
Q Consensus 533 as~ 535 (545)
++-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 654
No 465
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=91.96 E-value=20 Score=38.30 Aligned_cols=226 Identities=13% Similarity=0.127 Sum_probs=110.0
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCe-eeeEeccC-cccEEEEEEeCCCCcEEEEEcC--CCcEEEEECCCCceeeEEec
Q 009059 314 SPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGH-STTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKC 389 (545)
Q Consensus 314 sp~~~~l~t~s~dg~I~vwd~~~~~~-~~~~~~~h-~~~V~~l~~~p~~~~ll~s~s~--dg~I~lwd~~~~~~~~~~~~ 389 (545)
..++..++.+..+|.+....+..... ......+. .....++.+..++..+++.|+. |+.+..|....-+.+..+..
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 34677889999999998887765331 11222222 4556677777765345556654 55666666555666777777
Q ss_pred cCCeeEEEEeCC----CC------EEEEEEC---CCeEEEEECCCCEE--EEEecCC--CCCEEEEEEcC-CCCEEEEEe
Q 009059 390 QSGATQMRFQPR----LG------RILAAAI---ENYISILDVETQVC--RLKLQGH--KNQVHSVCWNT-SGEYLASVS 451 (545)
Q Consensus 390 ~~~v~~l~~sp~----~~------~l~~~~~---dg~I~i~d~~~~~~--~~~~~~h--~~~I~~l~~sp-~g~~l~s~s 451 (545)
-+++..+++... .. .+++++. +|.++++.-.-+-. ....... -..++.+.... ++.||+.+.
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence 788999888632 22 5666653 67888874322211 1111111 22333443322 256787777
Q ss_pred CCcEEEEEcCCCCCcceEEEE-----eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Ee-ccCCCCeeEEE
Q 009059 452 DELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL-SAHDKLVSSLA 524 (545)
Q Consensus 452 dg~I~vwd~~~~~~~~~i~~~-----~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~-~~h~~~V~~l~ 524 (545)
...-+++.+........+... ......+.+..+. +..++=.. ...|++.+....+.. .+ ......|.+.+
T Consensus 379 ~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt-~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~ 455 (504)
T PF10433_consen 379 PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVT-PKGIRLIDLEDGKLTQEWKPPAGSIIVAAS 455 (504)
T ss_dssp SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEE-SSEEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEe-cCeEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence 666667776421111222221 1112223333333 33333333 335788887776666 22 23444555555
Q ss_pred EeCCCCEEEEEeCCCcEEEc
Q 009059 525 ASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 525 ~spd~~~las~s~Dg~I~iW 544 (545)
+. +.+++.+-.++.+.++
T Consensus 456 ~~--~~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 456 IN--DPQVLVALSGGELVYF 473 (504)
T ss_dssp ES--SSEEEEEE-TTEEEEE
T ss_pred EC--CCEEEEEEeCCcEEEE
Confidence 43 3455555556665543
No 466
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.84 E-value=1.1 Score=41.75 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=47.4
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCeEEE--------ec-------cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 484 FHPTFPSLLVIGCYETLELWNMTENKTLT--------LS-------AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 484 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~~--------~~-------~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+...+.+|++.+.+|.+++||+.+++.+. +. .....|..+.++.+|.-|++-+ +|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 45678889999999999999999988761 11 3556788899998888777665 57777775
No 467
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.45 E-value=3.1 Score=39.36 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=74.3
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CC--cEEEEEcCCCCCcceEEE---EeeCCCceEEEEEcC
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHE---LSCTGNKFHSCVFHP 486 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg--~I~vwd~~~~~~~~~i~~---~~~~~~~v~~~~~sp 486 (545)
-.+||+.+++.............+-.+.+||++|.+|+ +| .+++++...........+ .-.......+...-+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 35788887755432222333334446779999999998 44 688888654111011111 112334555667778
Q ss_pred CCCEEEEEEcCC-eEEEEeCCC--CeEEEe--ccC------CCCeeEEEEeCCCCEEEEEeCCCcEE
Q 009059 487 TFPSLLVIGCYE-TLELWNMTE--NKTLTL--SAH------DKLVSSLAASTVNGMVASASHDKCVK 542 (545)
Q Consensus 487 ~~~~l~~~~~dg-~I~iwd~~~--~~~~~~--~~h------~~~V~~l~~spd~~~las~s~Dg~I~ 542 (545)
||+.|++|+... +..+|.-.. .....+ ... ...--.+...|+|++++.+..+..|.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 999999999886 566666532 112211 110 11112456679999999988766553
No 468
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.44 E-value=5.9 Score=45.66 Aligned_cols=228 Identities=12% Similarity=0.077 Sum_probs=106.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCC-ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~-~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
....++|+|.-.++|.+..+|.|++|-...-+.......-. ..+..+.|-...........+..+.+|.......
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~---- 112 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTG---- 112 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccce----
Confidence 45668999999999999999999999865433332222111 1222222222222333444455666666543221
Q ss_pred eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccCCeeEE-EEeCCCCEEEEEECCCeEEEEECC
Q 009059 344 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQM-RFQPRLGRILAAAIENYISILDVE 420 (545)
Q Consensus 344 ~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~~v~~l-~~sp~~~~l~~~~~dg~I~i~d~~ 420 (545)
..+...+++....+- ...+.+ ..+.+++||..-.......- ........ ...+..-.+..--.+-.-.++-+.
T Consensus 113 -~~~~~~~~~~~~~~~--~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 188 (993)
T KOG1983|consen 113 -VFLKQEITSFVTDPP--PDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISLP 188 (993)
T ss_pred -eecCCcceeccCCCC--cchhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeecc
Confidence 112233343333222 111344 77888888875322111110 00000000 000000000000000001111111
Q ss_pred CCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeE
Q 009059 421 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 500 (545)
Q Consensus 421 ~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I 500 (545)
... ..+..+..++.+..+......+.....+.+.+|+..... ....+. +....+..++..++++-.|+.+
T Consensus 189 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~v~~h~Dgs~ 258 (993)
T KOG1983|consen 189 DAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKY---VQSAYL-----PNGQLESRDGSHFVSYHTDGSY 258 (993)
T ss_pred ccc--ccccccccccceeeeecCCCcceeeeeeeeeehhccccc---chhhcc-----cccccCccCCceEEEEEecCCE
Confidence 000 122224455666666555666665556677777654331 111111 1111227788889999999999
Q ss_pred EEEeCCCCeE
Q 009059 501 ELWNMTENKT 510 (545)
Q Consensus 501 ~iwd~~~~~~ 510 (545)
.+||...++.
T Consensus 259 ~fWd~s~g~~ 268 (993)
T KOG1983|consen 259 AFWDVSSGKL 268 (993)
T ss_pred EeeecCCCce
Confidence 9999988754
No 469
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.94 E-value=20 Score=36.52 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=20.3
Q ss_pred EEEEeCCCCeEEEeccCC-CCeeEEEEeCCCCEEEEEeCC
Q 009059 500 LELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 500 I~iwd~~~~~~~~~~~h~-~~V~~l~~spd~~~las~s~D 538 (545)
+.+||.++++...+..-. ..-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 567888876654222111 111122334467788888753
No 470
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.86 E-value=17 Score=35.38 Aligned_cols=195 Identities=10% Similarity=0.097 Sum_probs=108.8
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEECC------CC-ceeeEEec------cCCeeEEEEeCCCC------------
Q 009059 349 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------NG-SCAGVFKC------QSGATQMRFQPRLG------------ 403 (545)
Q Consensus 349 ~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~------~~-~~~~~~~~------~~~v~~l~~sp~~~------------ 403 (545)
..-+.|+++|.+. +.++....+...+||.. .. ..+-.+.. ....+.+.|+....
T Consensus 23 ~N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 23 RNAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 3467899999864 44466667889999986 11 12222221 13456666664322
Q ss_pred EEEEEECCCeEEEEECCCCEE-----EEEecC-CCCCE-EEEEEcC--CCCEEEEEe--CCcEEEEEcCCCCCcceEEEE
Q 009059 404 RILAAAIENYISILDVETQVC-----RLKLQG-HKNQV-HSVCWNT--SGEYLASVS--DELVRVWSIGSGSKGECIHEL 472 (545)
Q Consensus 404 ~l~~~~~dg~I~i~d~~~~~~-----~~~~~~-h~~~I-~~l~~sp--~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~ 472 (545)
.++.+++||+|.-|...-... ...+.. ....| ..+++.. .+.+|..+. .++|.|||-.-... ..-..+
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~-~~~g~F 180 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP-PLPGSF 180 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc-cCCCCc
Confidence 367888999999998532211 122221 12333 4455543 367888777 78999998542210 000000
Q ss_pred e-----eC---------CCc--eEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEe--ccCCCCeeEEEEeC------C
Q 009059 473 S-----CT---------GNK--FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL--SAHDKLVSSLAAST------V 528 (545)
Q Consensus 473 ~-----~~---------~~~--v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~~sp------d 528 (545)
. .. ... |+-..-.++...=+.+..-|.|-+||+...-+.++ .+.-...+.|+..| .
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 0 00 000 11111122333233444556899999977765544 24456677888766 3
Q ss_pred CCEEEEEeCCCcEEEcC
Q 009059 529 NGMVASASHDKCVKIWK 545 (545)
Q Consensus 529 ~~~las~s~Dg~I~iWd 545 (545)
+.+|+---.||+|..||
T Consensus 261 g~lLVGNFGDG~InaFD 277 (336)
T TIGR03118 261 GALLVGNFGDGTINAYD 277 (336)
T ss_pred CCeEEeecCCceeEEec
Confidence 56676655699999886
No 471
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.50 E-value=20 Score=35.75 Aligned_cols=143 Identities=13% Similarity=0.203 Sum_probs=86.7
Q ss_pred CCeeEEEEeCCCCEEEEEECCCe------EEEEECCCC----EEE-----EEecCCCC--------CEEEEEEcCCCCEE
Q 009059 391 SGATQMRFQPRLGRILAAAIENY------ISILDVETQ----VCR-----LKLQGHKN--------QVHSVCWNTSGEYL 447 (545)
Q Consensus 391 ~~v~~l~~sp~~~~l~~~~~dg~------I~i~d~~~~----~~~-----~~~~~h~~--------~I~~l~~sp~g~~l 447 (545)
++...+.+.++++.+++.+.+|. ++.+++... ..+ ..+....+ ..-+|++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 56788888877788888888887 776665531 111 11221111 33477887788888
Q ss_pred EEEe-C------CcEEEEEcCCCCCcceEE---EE---------eeCCCceEEEEEcCCCCEEEEEEcCC-------e--
Q 009059 448 ASVS-D------ELVRVWSIGSGSKGECIH---EL---------SCTGNKFHSCVFHPTFPSLLVIGCYE-------T-- 499 (545)
Q Consensus 448 ~s~s-d------g~I~vwd~~~~~~~~~i~---~~---------~~~~~~v~~~~~sp~~~~l~~~~~dg-------~-- 499 (545)
++.. + ..|+.++.. +.....+. .+ ......+..++++|+++.|+++.... .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 7766 6 678777765 33222221 11 12345688999999999777765422 1
Q ss_pred -----EEE--EeCCC-C---eEE--Eecc-----CCCCeeEEEEeCCCCEEEE
Q 009059 500 -----LEL--WNMTE-N---KTL--TLSA-----HDKLVSSLAASTVNGMVAS 534 (545)
Q Consensus 500 -----I~i--wd~~~-~---~~~--~~~~-----h~~~V~~l~~spd~~~las 534 (545)
+++ ||..+ + ... .+.. ....|..+.+-+++++|+-
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 444 55554 2 111 2222 4577899999999987764
No 472
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=90.47 E-value=13 Score=40.31 Aligned_cols=165 Identities=16% Similarity=0.145 Sum_probs=88.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEE--Eec-cCCccEEEEEEcC------CCCEEEEEeC-C---CeE
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLE-EHTQWITDVRFSP------SLSRLATSSA-D---RTV 329 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~--~l~-~h~~~V~~l~~sp------~~~~l~t~s~-d---g~I 329 (545)
.+.|..+.|..+++.+++.-.+|.|.+||...+.... .+. .+...|.-=+|-+ ...++++.+. + -.+
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 5679999999999999999999999999993322221 221 1222111112322 2345554443 2 256
Q ss_pred EEEECCCCCeeeeEec---cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCe-----eEEEEeCC
Q 009059 330 RVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-----TQMRFQPR 401 (545)
Q Consensus 330 ~vwd~~~~~~~~~~~~---~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v-----~~l~~sp~ 401 (545)
+++.+......+..+. .+........|.-..+.+..- .+++|.+|++...+...++....-+ ..+.+.|-
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence 7777722221122221 112222222232222334333 5789999999888877777654222 12233332
Q ss_pred CCEEEEEECCCeEEEEECCCCEEEEEec
Q 009059 402 LGRILAAAIENYISILDVETQVCRLKLQ 429 (545)
Q Consensus 402 ~~~l~~~~~dg~I~i~d~~~~~~~~~~~ 429 (545)
...-+.-+.++.|++.|+.-...+..+.
T Consensus 287 s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 287 SPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 2223344567899999987655444433
No 473
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.46 E-value=22 Score=36.13 Aligned_cols=186 Identities=5% Similarity=-0.039 Sum_probs=98.0
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccC-cccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC--CeeE
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQ 395 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~--~v~~ 395 (545)
.++.+..+|.|.-.|.+++.......... ...+..-.+..+|. ++.++.++.++.+|..+++.+..+.... .+..
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 45555788888888888776422111111 12233333333553 4477778899999999999998888766 1112
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCC---CEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEE
Q 009059 396 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN---QVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~---~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~ 470 (545)
..+-.+ ..++..+.++.+...|..+++.+........ .+..--...++..++... ++.+.-+|..++.. ..
T Consensus 148 ~~v~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~---~w 223 (370)
T COG1520 148 PPVVGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTL---KW 223 (370)
T ss_pred CcEEcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcE---ee
Confidence 222222 4555555789999999999888766443221 111111112333333322 33455556655532 21
Q ss_pred EEe----eCCC------ceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 471 ELS----CTGN------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 471 ~~~----~~~~------~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
..+ .... .+..-...-++ .++.++.++.+...|..+++.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 224 SQKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eeeeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceE
Confidence 110 0000 01100111122 2466677777888888888877
No 474
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.32 E-value=1.3 Score=28.68 Aligned_cols=41 Identities=5% Similarity=0.067 Sum_probs=31.9
Q ss_pred CCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEE
Q 009059 358 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRF 398 (545)
Q Consensus 358 p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~ 398 (545)
|+++.++++...++.|.++|..+++.+..+........+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 56777887887889999999999988888776555555554
No 475
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=89.57 E-value=13 Score=38.48 Aligned_cols=31 Identities=23% Similarity=0.546 Sum_probs=23.7
Q ss_pred CCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCC
Q 009059 432 KNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 462 (545)
Q Consensus 432 ~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~ 462 (545)
+..|..++..+..++|++.. ++.|.+|++..
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34599999999889999988 88999999975
No 476
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=89.56 E-value=35 Score=37.12 Aligned_cols=123 Identities=17% Similarity=0.181 Sum_probs=68.4
Q ss_pred EEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEE--EecC-CCCCEEEEEEcC------CCCEEEEEe--CC-
Q 009059 386 VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQG-HKNQVHSVCWNT------SGEYLASVS--DE- 453 (545)
Q Consensus 386 ~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~--~~~~-h~~~I~~l~~sp------~g~~l~s~s--dg- 453 (545)
.++....+..+.|..++..+++....|.|.+||...+.... .+.. +...+..-+|-+ ...++++.+ ++
T Consensus 125 ~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~ 204 (670)
T PF10395_consen 125 ELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNS 204 (670)
T ss_pred EEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCC
Confidence 44566789999999999999999999999999993322111 2211 222121112222 223444433 22
Q ss_pred --cEEEEEcCCCCCcceEEEEe---eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 454 --LVRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 454 --~I~vwd~~~~~~~~~i~~~~---~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
..+++.+.... ..+.++. .+......+.|.-....|+.- .++.|.+|++..-+..
T Consensus 205 k~~ykL~~l~~~~--~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~ 264 (670)
T PF10395_consen 205 KLSYKLISLSNES--SSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQ 264 (670)
T ss_pred cEEEEEEEeccCC--cceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEE
Confidence 78888882211 2223332 222333334443333334333 7779999999877655
No 477
>PLN02193 nitrile-specifier protein
Probab=89.55 E-value=31 Score=36.45 Aligned_cols=173 Identities=8% Similarity=-0.016 Sum_probs=80.3
Q ss_pred CcEEEEEcCC-------CcEEEEECCCCceeeEEe---ccC--CeeEEEEeCCCCEEEEEECC-----CeEEEEECCCCE
Q 009059 361 EDLLCSCDNN-------SEIRYWSINNGSCAGVFK---CQS--GATQMRFQPRLGRILAAAIE-----NYISILDVETQV 423 (545)
Q Consensus 361 ~~ll~s~s~d-------g~I~lwd~~~~~~~~~~~---~~~--~v~~l~~sp~~~~l~~~~~d-----g~I~i~d~~~~~ 423 (545)
+.+++.|+.+ ..+.+||+.+.+-...-. .+. ........-++..++.++.+ +.+.+||+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4566566642 247788887755432111 011 01111122233455555543 468899998764
Q ss_pred EEE--Eec--CCCCCEEEEEEcCCCCEEEEEe-CC-----cEEEEEcCCCCCcceEEEE---eeCCCceEEEEEcCCCCE
Q 009059 424 CRL--KLQ--GHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 424 ~~~--~~~--~h~~~I~~l~~sp~g~~l~s~s-dg-----~I~vwd~~~~~~~~~i~~~---~~~~~~v~~~~~sp~~~~ 490 (545)
-.. .+. .....-.+++. -++++++.|+ ++ .+..||+.+..- ..+... ...... ..++. -+++.
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~R~~-~~~~~-~~gki 331 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW-FHCSTPGDSFSIRGG-AGLEV-VQGKV 331 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE-EeCCCCCCCCCCCCC-cEEEE-ECCcE
Confidence 332 111 01111122222 2455555555 32 467788765421 111100 000111 12222 25566
Q ss_pred EEEEEcC----CeEEEEeCCCCeEEEeccC-----CCCeeEEEEeCCCCEEEEEeCC
Q 009059 491 LLVIGCY----ETLELWNMTENKTLTLSAH-----DKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 491 l~~~~~d----g~I~iwd~~~~~~~~~~~h-----~~~V~~l~~spd~~~las~s~D 538 (545)
++.++.+ ..+.+||+.+.+...+... .....++ ..-++++++.|+.+
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~ 387 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEI 387 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCcc
Confidence 6666654 4689999998877644321 1111222 23356777777753
No 478
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.48 E-value=27 Score=35.65 Aligned_cols=14 Identities=7% Similarity=0.135 Sum_probs=9.7
Q ss_pred cEEEEECCCCceee
Q 009059 372 EIRYWSINNGSCAG 385 (545)
Q Consensus 372 ~I~lwd~~~~~~~~ 385 (545)
.+.+||..+.+...
T Consensus 190 ~v~~YD~~t~~W~~ 203 (376)
T PRK14131 190 EVLSYDPSTNQWKN 203 (376)
T ss_pred eEEEEECCCCeeeE
Confidence 58889987765543
No 479
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.48 E-value=24 Score=35.17 Aligned_cols=142 Identities=14% Similarity=0.195 Sum_probs=81.9
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCe------EEEEECCCCC---eee-----eEeccCcc--------cEEEEEEeCCCCcE
Q 009059 306 QWITDVRFSPSLSRLATSSADRT------VRVWDTENPD---YSL-----RTFTGHST--------TVMSLDFHPSKEDL 363 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~------I~vwd~~~~~---~~~-----~~~~~h~~--------~V~~l~~~p~~~~l 363 (545)
+.+..|.+.+++..+++.+.+|. +..+++.... ..+ ..+..-.+ ..-+|++.+++ .+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence 45677888866566666677776 5555544310 001 11111111 34477885554 45
Q ss_pred EEEEcCC------CcEEEEECCCCceeeEEe----------------ccCCeeEEEEeCCCCEEEEEEC-----CC----
Q 009059 364 LCSCDNN------SEIRYWSINNGSCAGVFK----------------CQSGATQMRFQPRLGRILAAAI-----EN---- 412 (545)
Q Consensus 364 l~s~s~d------g~I~lwd~~~~~~~~~~~----------------~~~~v~~l~~sp~~~~l~~~~~-----dg---- 412 (545)
+++.-.+ ..|+.++.. ++....+. .+.+...++++|++..|+++.. |+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 5465556 678888876 55544432 2334778999999987777654 22
Q ss_pred -------eEEEEECCC-CE----EEEEecC-----CCCCEEEEEEcCCCCEEEE
Q 009059 413 -------YISILDVET-QV----CRLKLQG-----HKNQVHSVCWNTSGEYLAS 449 (545)
Q Consensus 413 -------~I~i~d~~~-~~----~~~~~~~-----h~~~I~~l~~sp~g~~l~s 449 (545)
.|..||..+ +. ....+.. ....|..+.+.+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 244456554 21 2223332 3467888888899887765
No 480
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.25 E-value=6.6 Score=40.62 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=16.5
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEE
Q 009059 350 TVMSLDFHPSKEDLLCSCDNNSEIRYW 376 (545)
Q Consensus 350 ~V~~l~~~p~~~~ll~s~s~dg~I~lw 376 (545)
.|..+..++.|..++.+| .+|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~G-~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIG-IKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEec-CCeeEEEE
Confidence 577778888876655444 46654443
No 481
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=89.23 E-value=26 Score=35.16 Aligned_cols=41 Identities=12% Similarity=0.158 Sum_probs=22.9
Q ss_pred eEEEEeCCCCeEEEeccCCCC-eeEEEEeCCCCEEEEEeCCC
Q 009059 499 TLELWNMTENKTLTLSAHDKL-VSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 499 ~I~iwd~~~~~~~~~~~h~~~-V~~l~~spd~~~las~s~Dg 539 (545)
.+.+||.++.+...+...... -...+..-++++++.|+.+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 467888877655433222111 12223345788888888653
No 482
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.00 E-value=4.1 Score=46.72 Aligned_cols=137 Identities=9% Similarity=0.143 Sum_probs=85.6
Q ss_pred EECCCeEEEEECCCCEEEEEecCCCCCEEEEEEc--------CC-CCEEEEEeCCcEEEEEcCCCCC----cc--eEEEE
Q 009059 408 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWN--------TS-GEYLASVSDELVRVWSIGSGSK----GE--CIHEL 472 (545)
Q Consensus 408 ~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~s--------p~-g~~l~s~sdg~I~vwd~~~~~~----~~--~i~~~ 472 (545)
.+.|+.+.+|+.+++.....+.+-...|..+..- |. ..+|+.+.--.|.++-+.-... .. ....+
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 3568999999999977777777666666666542 22 2344555555566654432211 01 11233
Q ss_pred eeCCCceEEEEEcCCCCEEEEEEcCCeEEE--EeCCCC----e-----------------EEEec-cCCCCeeEEEEeCC
Q 009059 473 SCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTEN----K-----------------TLTLS-AHDKLVSSLAASTV 528 (545)
Q Consensus 473 ~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i--wd~~~~----~-----------------~~~~~-~h~~~V~~l~~spd 528 (545)
...+..|.++....+|+ ++.+|.||.|+- |...++ + ...+. .+..+|..|++...
T Consensus 175 ~~dg~~V~~I~~t~nGR-IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGR-IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred ecCCceEEEEEeccCCc-EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 34466788888778888 555666664432 222221 0 11223 56779999999988
Q ss_pred CCEEEEEeCCCcEEEcC
Q 009059 529 NGMVASASHDKCVKIWK 545 (545)
Q Consensus 529 ~~~las~s~Dg~I~iWd 545 (545)
.++|.+-+..|+|.+||
T Consensus 254 R~IlY~lsek~~v~~Y~ 270 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYD 270 (1311)
T ss_pred cceeeeeccCceEEEEE
Confidence 88999999999999996
No 483
>PLN02153 epithiospecifier protein
Probab=88.86 E-value=27 Score=34.96 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=33.0
Q ss_pred CCCEEEEEeCC-------CcEEEEEcCCCeEEEEe--cc-CCc---cEEEEEEcCCCCEEEEEeCC-----CeEEEEECC
Q 009059 274 DGKLLATGGHD-------KKAVLWCTESFTVKSTL--EE-HTQ---WITDVRFSPSLSRLATSSAD-----RTVRVWDTE 335 (545)
Q Consensus 274 dg~~latg~~d-------g~I~lwd~~~~~~~~~l--~~-h~~---~V~~l~~sp~~~~l~t~s~d-----g~I~vwd~~ 335 (545)
++++++.|+.+ ..+.+||..+.+-.... .. ... ....+.+ ++++++.|+.+ ..+.+||..
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 35566666653 35778887764322111 00 010 1222233 46677777653 257788887
Q ss_pred CCCe
Q 009059 336 NPDY 339 (545)
Q Consensus 336 ~~~~ 339 (545)
+...
T Consensus 110 t~~W 113 (341)
T PLN02153 110 KNEW 113 (341)
T ss_pred CCEE
Confidence 6543
No 484
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.46 E-value=30 Score=35.02 Aligned_cols=181 Identities=13% Similarity=0.182 Sum_probs=102.2
Q ss_pred CcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEe----CCCCE--EEEEEC-C---CeEEEEECC--CCEEEEEe
Q 009059 361 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ----PRLGR--ILAAAI-E---NYISILDVE--TQVCRLKL 428 (545)
Q Consensus 361 ~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~s----p~~~~--l~~~~~-d---g~I~i~d~~--~~~~~~~~ 428 (545)
+.+++....++-+.+||+. |+.+..+.. +..+.+..- -.+.. |++++. + ..|++|.+. ++.. ..+
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~-Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L-~~v 144 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLPV-GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL-TDV 144 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE-S-S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE-EE-
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeecC-CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc-eEc
Confidence 3466677788899999998 455555532 334333321 23333 444443 2 468888664 4433 222
Q ss_pred cC-------CCCCEEEEEEc--C-CCCEEEE-Ee-CCcEEEEEcCCCCC----cceEEEEeeCCCceEEEEEcCCCCEEE
Q 009059 429 QG-------HKNQVHSVCWN--T-SGEYLAS-VS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLL 492 (545)
Q Consensus 429 ~~-------h~~~I~~l~~s--p-~g~~l~s-~s-dg~I~vwd~~~~~~----~~~i~~~~~~~~~v~~~~~sp~~~~l~ 492 (545)
.. ....++.+|+. + +|.+.+. .. +|.+..|.+..... ...++++.. ...+..|+......+|+
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLY 223 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEE
Confidence 21 12346777763 3 4654444 44 88888888753222 245666664 45899999999999999
Q ss_pred EEEcCCeEEEEeCCCC-----eEEEe-cc--CCCCeeEEEEeC--CC-CEEEEEe-CCCcEEEcC
Q 009059 493 VIGCYETLELWNMTEN-----KTLTL-SA--HDKLVSSLAAST--VN-GMVASAS-HDKCVKIWK 545 (545)
Q Consensus 493 ~~~~dg~I~iwd~~~~-----~~~~~-~~--h~~~V~~l~~sp--d~-~~las~s-~Dg~I~iWd 545 (545)
++-.+..|+-|+.+-. ..+.. .+ ....|-.|++-. ++ .||+..+ .+++..|||
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 9999999999988522 22222 22 346678887753 33 3555554 466777774
No 485
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.46 E-value=2.1 Score=28.24 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=26.9
Q ss_pred ccEEEEEEeCCCC--cEEEEEcCCCcEEEEECCC
Q 009059 349 TTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 349 ~~V~~l~~~p~~~--~ll~s~s~dg~I~lwd~~~ 380 (545)
+.|.++.|+|... .||+....-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998655 7888888889999999995
No 486
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.43 E-value=34 Score=38.79 Aligned_cols=170 Identities=12% Similarity=0.154 Sum_probs=88.3
Q ss_pred EEEEECCCCCeeeeEec-c---CcccEEEEEEeCCCCc-EEEEEc-----------CCCcEEEEECC-CCceeeEEeccC
Q 009059 329 VRVWDTENPDYSLRTFT-G---HSTTVMSLDFHPSKED-LLCSCD-----------NNSEIRYWSIN-NGSCAGVFKCQS 391 (545)
Q Consensus 329 I~vwd~~~~~~~~~~~~-~---h~~~V~~l~~~p~~~~-ll~s~s-----------~dg~I~lwd~~-~~~~~~~~~~~~ 391 (545)
|+++|..+++. +..+. + ..-.+..+.|+..... ++++|. .+|.++.|++- .++.+. +-+..
T Consensus 855 I~~~d~~s~~~-~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~le-llh~T 932 (1205)
T KOG1898|consen 855 IRVFDPKSGKI-ICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLE-LLHKT 932 (1205)
T ss_pred EEEEcCCCCce-EEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceee-eeecc
Confidence 66666665543 22111 1 1123555666554433 333332 23456666653 333222 22222
Q ss_pred C--eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec--CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCc
Q 009059 392 G--ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 466 (545)
Q Consensus 392 ~--v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~ 466 (545)
. -.-.++.|-.+ .+.++....+++||+...+.++... .-...|..+.+ .+..+++|. ...|.++..+...
T Consensus 933 ~~~~~v~Ai~~f~~-~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~-- 1007 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQG-RVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRED-- 1007 (1205)
T ss_pred CCCccceEEeccCC-EEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCC--
Confidence 2 22345566656 4455667899999998876554332 23456777776 456677777 4444444433322
Q ss_pred ceEEEEeeC--CCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 467 ECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 467 ~~i~~~~~~--~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
..+..+... ...|+++.+- |...++.+..-|.+.+..+.
T Consensus 1008 n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1008 NQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 233333322 2335554443 45558888888888887664
No 487
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=87.92 E-value=24 Score=36.60 Aligned_cols=29 Identities=14% Similarity=0.392 Sum_probs=18.3
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 478 KFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 478 ~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
.|..++..+..+.+++...++.|.+|++.
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 36666666666777777777777777764
No 488
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.91 E-value=6.7 Score=42.83 Aligned_cols=104 Identities=16% Similarity=0.145 Sum_probs=70.1
Q ss_pred CCCEEEEEeCCCcEEEEEcCC-------C----e---------EEEEeccCCccEEEEEEc--CCCCEEEEEeCCCeEEE
Q 009059 274 DGKLLATGGHDKKAVLWCTES-------F----T---------VKSTLEEHTQWITDVRFS--PSLSRLATSSADRTVRV 331 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~-------~----~---------~~~~l~~h~~~V~~l~~s--p~~~~l~t~s~dg~I~v 331 (545)
+...|+.|..||.|.+|.+++ . + +...+. -...++.++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 556888999999999996531 1 0 111222 23468999998 77888999888888888
Q ss_pred EECCCC--CeeeeEeccCcccEEEEEEeCCC--C---cEEEEEcCCCcEEEEEC
Q 009059 332 WDTENP--DYSLRTFTGHSTTVMSLDFHPSK--E---DLLCSCDNNSEIRYWSI 378 (545)
Q Consensus 332 wd~~~~--~~~~~~~~~h~~~V~~l~~~p~~--~---~ll~s~s~dg~I~lwd~ 378 (545)
|-+... +.....-..|...|-+|.|.++. . ..+++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 765432 21111112356678999997754 1 26778888999998887
No 489
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=87.62 E-value=6.6 Score=39.21 Aligned_cols=118 Identities=18% Similarity=0.119 Sum_probs=66.0
Q ss_pred CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCC-----CEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCC
Q 009059 391 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-----QVHSVCWNTSGEYLASVSDELVRVWSIGSGSK 465 (545)
Q Consensus 391 ~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~-----~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~ 465 (545)
+....++|...++.++++..---+...+...+.... +..+.. -.+.+..++ +|.|++=|..+.-.
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~-l~~~~~G~~~kf~N~ldI~~---------~g~vyFTDSSsk~~ 184 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAEL-LADEAEGKPFKFLNDLDIDP---------EGVVYFTDSSSKYD 184 (376)
T ss_pred CCcceEEeccCCCeEEEEecceeeEEECCCCCccee-ccccccCeeeeecCceeEcC---------CCeEEEeccccccc
Confidence 456788999998888888776666666666654221 111111 112233333 33333333322100
Q ss_pred cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEe
Q 009059 466 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 466 ~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s 536 (545)
...+ .+ -++.+...|.+.-||..+.....+...-...+.++.|||+.+++.+=
T Consensus 185 ----------~rd~---~~-----a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~E 237 (376)
T KOG1520|consen 185 ----------RRDF---VF-----AALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAE 237 (376)
T ss_pred ----------hhhe---EE-----eeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEe
Confidence 0000 00 02333456678888988877666655566678899999999877663
No 490
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=87.29 E-value=15 Score=39.99 Aligned_cols=93 Identities=13% Similarity=0.249 Sum_probs=56.1
Q ss_pred eEEEEeCCCCEEEEEECCC-----eEEEEECCC---CEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCC
Q 009059 394 TQMRFQPRLGRILAAAIEN-----YISILDVET---QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK 465 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~dg-----~I~i~d~~~---~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~ 465 (545)
..+.|-|.|..+++...|| .|..|..+. |+.-.. .+....+..++|+-....++.+..+.|.+|-..+-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr-~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNy-- 326 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR-VGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNY-- 326 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc-CCchhhhhhhhhhHHHHHHHHhhcceEEEEEccce--
Confidence 3488999999999988665 344454322 111011 12234566778877777777777889999987543
Q ss_pred cceEEEEeeCCCceEEEEEcCCCCE
Q 009059 466 GECIHELSCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 466 ~~~i~~~~~~~~~v~~~~~sp~~~~ 490 (545)
.........-..+.-+.|+|....
T Consensus 327 -hWYLK~e~~ip~~s~vkwhpe~~n 350 (1243)
T COG5290 327 -HWYLKVERQIPGISYVKWHPEEKN 350 (1243)
T ss_pred -EEEEEEeecCCCcceeeeccccCc
Confidence 222222223445666788886643
No 491
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=87.21 E-value=45 Score=35.55 Aligned_cols=246 Identities=12% Similarity=0.110 Sum_probs=118.5
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCe--EEEEeccC-CccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCee-eeEecc
Q 009059 272 SPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEH-TQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYS-LRTFTG 346 (545)
Q Consensus 272 spdg~~latg~~dg~I~lwd~~~~~--~~~~l~~h-~~~V~~l~~sp~~-~~l~t~s~dg~I~vwd~~~~~~~-~~~~~~ 346 (545)
..++..++.+..+|.+....+.... .....-+. .....++.+..++ .+|+.|+.-|.=.++.+...... +..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 4467788888999999887765433 11222222 4455667776554 47777776444333333322222 33333
Q ss_pred CcccEEEEEEeCC---CC-------cEEEEEc--CCCcEEEEECCCC---ceeeEEeccCCeeEEEEeCC----CCEEEE
Q 009059 347 HSTTVMSLDFHPS---KE-------DLLCSCD--NNSEIRYWSINNG---SCAGVFKCQSGATQMRFQPR----LGRILA 407 (545)
Q Consensus 347 h~~~V~~l~~~p~---~~-------~ll~s~s--~dg~I~lwd~~~~---~~~~~~~~~~~v~~l~~sp~----~~~l~~ 407 (545)
.-++|..+++.+. +. .++++++ .+|.+++..-.-+ .........+ +..+-..+. +.+++.
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEE
Confidence 4568888888532 12 4554443 5678888743111 1222222222 444332222 244554
Q ss_pred EECCCeEEEEECC---CCEEEEEec--C---CCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEee-CCCc
Q 009059 408 AAIENYISILDVE---TQVCRLKLQ--G---HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC-TGNK 478 (545)
Q Consensus 408 ~~~dg~I~i~d~~---~~~~~~~~~--~---h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~-~~~~ 478 (545)
+.. ..-+++.+. ..+.+..+. + ....+.+-.+. +..++=.....|++.+.... ........ ....
T Consensus 377 S~~-~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~---~~~~~w~~~~~~~ 450 (504)
T PF10433_consen 377 SFP-NETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDG---KLTQEWKPPAGSI 450 (504)
T ss_dssp EES-SEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSST---SEEEEEE-TTS--
T ss_pred EcC-CceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCC---eEEEEEeCCCCCe
Confidence 444 444455543 233332221 1 12233333333 55666666667888887655 34444332 3334
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Eec-----cCCCCeeEEEEeC
Q 009059 479 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-----AHDKLVSSLAAST 527 (545)
Q Consensus 479 v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~-----~h~~~V~~l~~sp 527 (545)
|...+.. +..++++..++.+.++.+...... ... .....|.|+...|
T Consensus 451 I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 451 IVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp -SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 4444443 356888888889999988777665 211 1467888888766
No 492
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.93 E-value=3.3 Score=37.07 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=23.7
Q ss_pred CCeeEEEEeCCC------CEEEEEeCCCcEEEcC
Q 009059 518 KLVSSLAASTVN------GMVASASHDKCVKIWK 545 (545)
Q Consensus 518 ~~V~~l~~spd~------~~las~s~Dg~I~iWd 545 (545)
..|.+++|||-| -+||+.+.+|.|.||.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~ 119 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG 119 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence 478999999955 2899999999999983
No 493
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.72 E-value=2.6 Score=42.69 Aligned_cols=163 Identities=11% Similarity=0.093 Sum_probs=96.7
Q ss_pred EEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccC-cc----cEE-EEEEeCCCCcEEEEEcCCC
Q 009059 298 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-ST----TVM-SLDFHPSKEDLLCSCDNNS 371 (545)
Q Consensus 298 ~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h-~~----~V~-~l~~~p~~~~ll~s~s~dg 371 (545)
+..+......|..+-..|||+.|+.-+. ..+.|+++.+.....+.+... .+ .|+ .+.....+..++ .++.||
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLL-v~~~dG 290 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLL-VVHEDG 290 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEE-EEcCCC
Confidence 3345555667888899999998887765 689999988765444433221 11 122 111122233344 777888
Q ss_pred cEEEE-ECCCCce-----eeEEecc-CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCC
Q 009059 372 EIRYW-SINNGSC-----AGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG 444 (545)
Q Consensus 372 ~I~lw-d~~~~~~-----~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g 444 (545)
.|.-| |++.+.. ++.++.. ..+..+.-..+.+-++.-...|++.+|.....+.+..-. --..+.-++++|++
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~ 369 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQ 369 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCccc
Confidence 88777 5543221 1222221 223223222333446666677888877655444333222 22356778999999
Q ss_pred CEEEEEeCCcEEEEEcCCC
Q 009059 445 EYLASVSDELVRVWSIGSG 463 (545)
Q Consensus 445 ~~l~s~sdg~I~vwd~~~~ 463 (545)
.++++-..|.|+++.+++.
T Consensus 370 ~~Ll~e~~gki~~~~l~Nr 388 (733)
T COG4590 370 AYLLSEDQGKIRLAQLENR 388 (733)
T ss_pred chheeecCCceEEEEecCC
Confidence 9999888889999998765
No 494
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.46 E-value=17 Score=42.02 Aligned_cols=157 Identities=13% Similarity=0.241 Sum_probs=94.5
Q ss_pred CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEE--------EeCCCCEEEEEECCCeEEEE
Q 009059 347 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR--------FQPRLGRILAAAIENYISIL 417 (545)
Q Consensus 347 h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~--------~sp~~~~l~~~~~dg~I~i~ 417 (545)
|...-..+-+.|.=...-++- |..+.+|+.+++.....+.. ...|..+. |.|.=.++++.+..-.|.++
T Consensus 77 ~~~~~~~mGiFpeI~RaWiTi--Dn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~il 154 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWITI--DNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVIL 154 (1311)
T ss_pred CcceeeeeccchhhcceEEEe--CCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEE
Confidence 333344444555433444343 88999999998654444432 12233322 33444566666666666665
Q ss_pred ECC----CCEE-----EEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcC--CCCC--cc-e---------------
Q 009059 418 DVE----TQVC-----RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG--SGSK--GE-C--------------- 468 (545)
Q Consensus 418 d~~----~~~~-----~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~--~~~~--~~-~--------------- 468 (545)
-+. ++.. ..++......|.|+....+|+.+.+|.||. +|.+. .... .. |
T Consensus 155 gV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvP 232 (1311)
T KOG1900|consen 155 GVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVP 232 (1311)
T ss_pred EEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhh
Confidence 432 1111 122333456789999889999999999884 44431 1100 00 0
Q ss_pred -EEEEe-eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 469 -IHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 469 -i~~~~-~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
+..+. .+..+|..+.+...-..+++-+..++|.+||+..
T Consensus 233 s~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 233 SLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11122 4467899999999989999999999999999976
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.04 E-value=14 Score=35.86 Aligned_cols=112 Identities=16% Similarity=0.219 Sum_probs=66.7
Q ss_pred CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEc------CCCcEEEEECCCCceeeEEe-----ccCCeeE
Q 009059 327 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFK-----CQSGATQ 395 (545)
Q Consensus 327 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s------~dg~I~lwd~~~~~~~~~~~-----~~~~v~~ 395 (545)
..|++||..+.+. ...-.+-.+.|+++.|..+ +.++++|. ....+..||+.+......-. .++++..
T Consensus 16 ~~lC~yd~~~~qW-~~~g~~i~G~V~~l~~~~~-~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQW-SSPGNGISGTVTDLQWASN-NQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEe-ecCCCCceEEEEEEEEecC-CEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 4699999987665 3333456789999999844 56776764 35578889988765422222 2356777
Q ss_pred EEEeC-CCCEEE-EEE-C--CCeEEEEECCCCEEEEE-ecCCCCCEEEEEE
Q 009059 396 MRFQP-RLGRIL-AAA-I--ENYISILDVETQVCRLK-LQGHKNQVHSVCW 440 (545)
Q Consensus 396 l~~sp-~~~~l~-~~~-~--dg~I~i~d~~~~~~~~~-~~~h~~~I~~l~~ 440 (545)
+.+.. +...+. +|. . +..|..||-.....+.. .......|..+.+
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 77643 333344 333 2 34677777665554443 2222345555544
No 496
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=85.61 E-value=21 Score=33.85 Aligned_cols=142 Identities=13% Similarity=0.134 Sum_probs=74.6
Q ss_pred EEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC-C--CeEEEEECCC-C-CeeeeEe---ccCcccEEEEEEeC
Q 009059 287 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D--RTVRVWDTEN-P-DYSLRTF---TGHSTTVMSLDFHP 358 (545)
Q Consensus 287 I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~-d--g~I~vwd~~~-~-~~~~~~~---~~h~~~V~~l~~~p 358 (545)
-.+||+.+.+....--...-....-.|.+||++|.+|+. + ..+++++... . ....... -.....--.....+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 457888876554222222222333457789999999875 2 3578887643 1 1111111 11122233444567
Q ss_pred CCCcEEEEEcCCCcEEEEECCCC-ceeeEEec---------cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEe
Q 009059 359 SKEDLLCSCDNNSEIRYWSINNG-SCAGVFKC---------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 428 (545)
Q Consensus 359 ~~~~ll~s~s~dg~I~lwd~~~~-~~~~~~~~---------~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~ 428 (545)
||+.+++.|...-..-+|.-... .....+.. ..--..+...|+|+.++.+..+ -.|||..+.+.++.+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence 88766655555445556654321 11111110 0112356678887777776654 445688888776666
Q ss_pred cC
Q 009059 429 QG 430 (545)
Q Consensus 429 ~~ 430 (545)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 54
No 497
>PRK13613 lipoprotein LpqB; Provisional
Probab=85.23 E-value=62 Score=35.26 Aligned_cols=190 Identities=9% Similarity=0.032 Sum_probs=103.0
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce----eeEEeccCCeeEEEEeCCCCEEEEEEC--CC--eEEEEECCC
Q 009059 350 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKCQSGATQMRFQPRLGRILAAAI--EN--YISILDVET 421 (545)
Q Consensus 350 ~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~----~~~~~~~~~v~~l~~sp~~~~l~~~~~--dg--~I~i~d~~~ 421 (545)
.+.+++.++++..+.+.......+++..+..+.. ..........+.-.|.+++ .+.+... ++ .++++.- +
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~-~ 441 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG-D 441 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC-C
Confidence 6788899998866665544334676666543332 1122223446677787775 5555532 22 2555543 3
Q ss_pred CEEEE-EecCCC-CCEEEEEEcCCCCEEEEEeC----CcEEEEEcCCCCCcc-eEE---EEeeCCCceEEEEEcCCCCEE
Q 009059 422 QVCRL-KLQGHK-NQVHSVCWNTSGEYLASVSD----ELVRVWSIGSGSKGE-CIH---ELSCTGNKFHSCVFHPTFPSL 491 (545)
Q Consensus 422 ~~~~~-~~~~h~-~~I~~l~~sp~g~~l~s~sd----g~I~vwd~~~~~~~~-~i~---~~~~~~~~v~~~~~sp~~~~l 491 (545)
++... ...... ..|..+..++||-.++...+ +.|.|=-+....... .+. .+......+..+.|..+...+
T Consensus 442 G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~sL~ 521 (599)
T PRK13613 442 GEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDSQLV 521 (599)
T ss_pred CcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCCEEE
Confidence 33321 111222 37999999999987766542 466665554322221 111 222223458999999999866
Q ss_pred EEEEc-C--CeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCC-EEEEEeCCCcE
Q 009059 492 LVIGC-Y--ETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCV 541 (545)
Q Consensus 492 ~~~~~-d--g~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~-~las~s~Dg~I 541 (545)
+.+.. . ..+++.++...... .....-..+..|+-..+.+ .|+.+..++.|
T Consensus 522 Vlg~~~~~~~~v~~v~vdG~~~~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 522 VLGREEGGVQQARYVQVDGSTPPASAPAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred EEeccCCCCcceEEEecCCcCcccccccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 65533 2 24555555544332 1223445566677766665 55553444444
No 498
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=85.16 E-value=60 Score=35.10 Aligned_cols=218 Identities=12% Similarity=0.060 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC----cEEEEEC
Q 009059 308 ITDVRFSPSLSRLATSSADR-----TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSI 378 (545)
Q Consensus 308 V~~l~~sp~~~~l~t~s~dg-----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg----~I~lwd~ 378 (545)
+-.++.+||.+++|-+-..- ++++-|+.++......+. +....++|.+++..++++-..+. .|....+
T Consensus 131 Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~---~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~ 207 (682)
T COG1770 131 LGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT---NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRL 207 (682)
T ss_pred eeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc---ccccceEEecCCCeEEEEEEcCCCCcceEEEEec
Q ss_pred CC--CceeeEEeccCC--eeEEEEeCCCCEEEEEECCC---eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 009059 379 NN--GSCAGVFKCQSG--ATQMRFQPRLGRILAAAIEN---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 379 ~~--~~~~~~~~~~~~--v~~l~~sp~~~~l~~~~~dg---~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s 451 (545)
.+ ..-...+..... ...+.-+....+|+....+. .+++.+.........+-.....=........+.++..-+
T Consensus 208 gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~s 287 (682)
T COG1770 208 GTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILS 287 (682)
T ss_pred CCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEEEEe
Q ss_pred --CC-cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCeEE-EeccCCCCeeEEE
Q 009059 452 --DE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTL-TLSAHDKLVSSLA 524 (545)
Q Consensus 452 --dg-~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~~~-~~~~h~~~V~~l~ 524 (545)
+| ..+|+.............+..|...+.--.|+--..+|+....++ .|++++..++... ...........+.
T Consensus 288 N~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~ 367 (682)
T COG1770 288 NADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLS 367 (682)
T ss_pred cCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCceeeEEecchhhhcccc
Q ss_pred EeCC
Q 009059 525 ASTV 528 (545)
Q Consensus 525 ~spd 528 (545)
.+++
T Consensus 368 ~~~e 371 (682)
T COG1770 368 GNPE 371 (682)
T ss_pred CCCC
No 499
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=84.88 E-value=40 Score=35.17 Aligned_cols=120 Identities=11% Similarity=0.145 Sum_probs=0.0
Q ss_pred CCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe-----eCCCceEEEEEcCCC----
Q 009059 419 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-----CTGNKFHSCVFHPTF---- 488 (545)
Q Consensus 419 ~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~-----~~~~~v~~~~~sp~~---- 488 (545)
...+-.+..+...-...+.|+|.|+|++|++-- .|.|++++..+... ..+..+. ........++++|+.
T Consensus 16 ~p~~f~~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~-~~~~~l~~v~~~~ge~GLlglal~PdF~~~~ 94 (454)
T TIGR03606 16 ASENFDKKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEV-KVVFTLPEIVNDAQHNGLLGLALHPDFMQEK 94 (454)
T ss_pred CCCCcEEEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCce-eeeecCCceeccCCCCceeeEEECCCccccC
Q ss_pred --CEEEEEE----------cCCeEEEEeCCCC-------eEE---EeccCCCCeeEEEEeCCCCEEEEEeCCC
Q 009059 489 --PSLLVIG----------CYETLELWNMTEN-------KTL---TLSAHDKLVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 489 --~~l~~~~----------~dg~I~iwd~~~~-------~~~---~~~~h~~~V~~l~~spd~~~las~s~Dg 539 (545)
.+|++.. ....|.-|.+... +.+ .-......-..|.|.|||.++++.++.+
T Consensus 95 ~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 95 GNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred CCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
No 500
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=84.71 E-value=57 Score=34.48 Aligned_cols=156 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred CCCEEEEE---eCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCc-c
Q 009059 274 DGKLLATG---GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-T 349 (545)
Q Consensus 274 dg~~latg---~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~-~ 349 (545)
++=+++.. .....+.++| ..|..+..+.........+.+.++|.+++... ..+..+|+.........+.... .
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~ 190 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYYD 190 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE-
T ss_pred CcEEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCEEEeeecCCcccc
Q ss_pred cEEEEEEeCCCCcEEEEEc-------------CCCcEEEEECCCCceeeEEeccCCe-----------------------
Q 009059 350 TVMSLDFHPSKEDLLCSCD-------------NNSEIRYWSINNGSCAGVFKCQSGA----------------------- 393 (545)
Q Consensus 350 ~V~~l~~~p~~~~ll~s~s-------------~dg~I~lwd~~~~~~~~~~~~~~~v----------------------- 393 (545)
--..+...|+|+.|+++.. .|. |..+| .+|+.+..+......
T Consensus 191 ~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~ 268 (477)
T PF05935_consen 191 FHHDIDELPNGNLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR 268 (477)
T ss_dssp B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred cccccEECCCCCEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCC
Q ss_pred -----eEEEEeCCCCEEEEEECCC-eEEEEECCCCEEEEEecCCCCC
Q 009059 394 -----TQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQ 434 (545)
Q Consensus 394 -----~~l~~sp~~~~l~~~~~dg-~I~i~d~~~~~~~~~~~~h~~~ 434 (545)
.++.+.+..+.|++.+..- .|..+|.++++....+..+...
T Consensus 269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w 315 (477)
T PF05935_consen 269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGW 315 (477)
T ss_dssp BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT-
T ss_pred CccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCC
Done!