Query 009059
Match_columns 545
No_of_seqs 966 out of 2512
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 17:53:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009059.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009059hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 5.9E-46 2E-50 383.9 42.1 284 257-545 102-408 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 3.9E-45 1.3E-49 368.0 45.9 288 253-545 45-340 (340)
3 3ow8_A WD repeat-containing pr 100.0 8.4E-45 2.9E-49 362.7 43.6 286 255-545 24-318 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 1.2E-43 4.3E-48 359.2 44.5 288 254-545 55-354 (354)
5 3iz6_a 40S ribosomal protein R 100.0 1.1E-44 3.7E-49 370.6 33.2 289 254-545 57-372 (380)
6 2ynn_A Coatomer subunit beta'; 100.0 8.2E-43 2.8E-47 345.4 41.4 283 255-542 5-297 (304)
7 3frx_A Guanine nucleotide-bind 100.0 1.9E-42 6.5E-47 345.3 44.1 289 250-545 4-314 (319)
8 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.4E-42 8.1E-47 348.5 42.7 293 252-545 4-332 (345)
9 1erj_A Transcriptional repress 100.0 2.3E-42 7.9E-47 355.0 42.9 282 261-545 62-386 (393)
10 4ery_A WD repeat-containing pr 100.0 2.3E-41 8E-46 335.7 44.9 288 253-545 13-309 (312)
11 2xzm_R RACK1; ribosome, transl 100.0 1.2E-41 4.1E-46 343.0 42.7 287 252-545 10-337 (343)
12 1nr0_A Actin interacting prote 100.0 9.9E-42 3.4E-46 370.5 42.3 297 240-545 129-564 (611)
13 1nr0_A Actin interacting prote 100.0 9.1E-42 3.1E-46 370.8 41.1 302 236-545 166-608 (611)
14 4gqb_B Methylosome protein 50; 100.0 7.6E-42 2.6E-46 344.4 36.1 279 261-545 28-328 (344)
15 2hes_X YDR267CP; beta-propelle 100.0 6.2E-41 2.1E-45 336.0 40.7 289 253-545 4-325 (330)
16 4g56_B MGC81050 protein; prote 100.0 8.5E-42 2.9E-46 346.1 34.1 282 259-545 38-340 (357)
17 2ymu_A WD-40 repeat protein; u 100.0 6.4E-40 2.2E-44 353.0 46.7 294 238-545 282-577 (577)
18 3zwl_B Eukaryotic translation 100.0 9.6E-40 3.3E-44 329.9 43.9 284 255-545 24-343 (369)
19 4aow_A Guanine nucleotide-bind 100.0 3E-39 1E-43 323.2 46.1 288 251-545 26-334 (340)
20 1sq9_A Antiviral protein SKI8; 100.0 1.3E-39 4.5E-44 333.5 38.7 287 253-545 6-392 (397)
21 2pm9_A Protein WEB1, protein t 100.0 4.4E-41 1.5E-45 346.5 26.4 305 237-545 42-411 (416)
22 3ow8_A WD repeat-containing pr 100.0 6.5E-39 2.2E-43 320.0 39.6 264 237-506 55-320 (321)
23 2ymu_A WD-40 repeat protein; u 100.0 2.1E-38 7E-43 341.3 46.2 295 237-545 240-536 (577)
24 1gxr_A ESG1, transducin-like e 100.0 2E-38 6.9E-43 316.3 42.8 280 259-545 47-334 (337)
25 1vyh_C Platelet-activating fac 100.0 2.4E-39 8.1E-44 334.4 36.9 261 238-506 128-410 (410)
26 3dm0_A Maltose-binding peripla 100.0 1.4E-38 4.8E-43 350.9 43.1 285 254-545 373-690 (694)
27 1r5m_A SIR4-interacting protei 100.0 9.7E-39 3.3E-43 329.0 38.4 299 239-545 67-422 (425)
28 1k8k_C P40, ARP2/3 complex 41 100.0 5E-39 1.7E-43 325.8 35.2 283 258-545 3-358 (372)
29 4gqb_B Methylosome protein 50; 100.0 1.9E-38 6.7E-43 319.5 36.1 244 261-510 80-334 (344)
30 3odt_A Protein DOA1; ubiquitin 100.0 1.5E-37 5E-42 306.9 41.8 280 252-545 7-293 (313)
31 2ynn_A Coatomer subunit beta'; 100.0 1E-37 3.5E-42 308.8 39.3 265 238-508 33-303 (304)
32 3k26_A Polycomb protein EED; W 100.0 7.4E-39 2.5E-43 323.3 31.0 286 257-545 12-363 (366)
33 3ei3_B DNA damage-binding prot 100.0 4.7E-38 1.6E-42 321.1 37.1 285 253-545 63-379 (383)
34 3i2n_A WD repeat-containing pr 100.0 4.1E-38 1.4E-42 317.0 35.8 287 257-545 12-350 (357)
35 1r5m_A SIR4-interacting protei 100.0 4.9E-38 1.7E-42 323.7 36.4 294 241-545 26-358 (425)
36 3gre_A Serine/threonine-protei 100.0 2.2E-38 7.4E-43 329.4 33.4 284 255-545 54-437 (437)
37 3vl1_A 26S proteasome regulato 100.0 1E-37 3.4E-42 322.2 35.7 298 239-545 77-416 (420)
38 3frx_A Guanine nucleotide-bind 100.0 1.2E-36 4E-41 303.4 40.5 266 237-508 37-318 (319)
39 1got_B GT-beta; complex (GTP-b 100.0 8.4E-37 2.9E-41 307.2 39.8 258 238-504 75-340 (340)
40 3dwl_C Actin-related protein 2 100.0 4.3E-39 1.5E-43 327.7 23.2 285 258-545 6-376 (377)
41 2j04_B YDR362CP, TAU91; beta p 100.0 2.3E-38 8E-43 335.5 27.9 305 236-545 179-514 (524)
42 2pm9_A Protein WEB1, protein t 100.0 3.9E-38 1.3E-42 324.5 27.2 278 265-545 14-334 (416)
43 4g56_B MGC81050 protein; prote 100.0 1.8E-37 6.3E-42 314.2 30.7 265 238-508 68-344 (357)
44 3v7d_B Cell division control p 100.0 3.7E-36 1.2E-40 315.1 41.2 280 254-545 112-418 (464)
45 4h5i_A Guanine nucleotide-exch 100.0 1.9E-37 6.6E-42 315.0 28.7 279 264-545 15-340 (365)
46 4e54_B DNA damage-binding prot 100.0 9.5E-38 3.3E-42 325.0 26.9 283 257-545 113-427 (435)
47 2xzm_R RACK1; ribosome, transl 100.0 2.8E-36 9.7E-41 303.6 36.8 267 237-508 46-341 (343)
48 3fm0_A Protein CIAO1; WDR39,SG 100.0 5E-36 1.7E-40 302.2 38.6 273 238-511 36-339 (345)
49 2pm7_B Protein transport prote 100.0 2.2E-36 7.5E-41 298.2 35.0 252 256-507 2-285 (297)
50 1gxr_A ESG1, transducin-like e 100.0 1.7E-36 5.8E-41 302.4 34.4 278 262-545 8-293 (337)
51 1yfq_A Cell cycle arrest prote 100.0 8.2E-37 2.8E-41 306.0 31.9 278 255-540 3-315 (342)
52 2pbi_B Guanine nucleotide-bind 100.0 7.2E-36 2.5E-40 302.1 39.1 261 237-504 83-354 (354)
53 3mmy_A MRNA export factor; mRN 100.0 2.8E-36 9.6E-41 304.3 34.7 288 252-544 28-342 (368)
54 4a11_B DNA excision repair pro 100.0 1.9E-36 6.6E-41 310.3 33.9 302 239-545 22-362 (408)
55 4aez_A CDC20, WD repeat-contai 100.0 1.3E-35 4.6E-40 305.3 39.4 277 259-545 87-377 (401)
56 2oaj_A Protein SNI1; WD40 repe 100.0 9.9E-36 3.4E-40 335.9 41.0 181 239-426 38-247 (902)
57 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5E-35 1.7E-39 305.1 43.3 289 237-545 136-439 (445)
58 3f3f_A Nucleoporin SEH1; struc 100.0 2.7E-36 9.4E-41 301.3 32.4 285 257-545 5-334 (351)
59 1erj_A Transcriptional repress 100.0 1.8E-35 6.1E-40 303.6 39.2 262 239-508 84-390 (393)
60 1pgu_A Actin interacting prote 100.0 2.3E-35 7.9E-40 319.3 42.1 294 240-545 142-611 (615)
61 2hes_X YDR267CP; beta-propelle 100.0 1.4E-35 4.8E-40 297.0 36.9 267 238-507 32-328 (330)
62 4gga_A P55CDC, cell division c 100.0 3.9E-35 1.3E-39 303.8 41.3 270 266-545 108-392 (420)
63 3v7d_B Cell division control p 100.0 9.3E-35 3.2E-39 304.4 44.6 293 237-544 139-459 (464)
64 3dw8_B Serine/threonine-protei 100.0 2.4E-36 8.1E-41 314.3 32.2 278 261-544 26-442 (447)
65 4ery_A WD repeat-containing pr 100.0 5.9E-35 2E-39 289.5 40.3 261 238-506 43-311 (312)
66 3vl1_A 26S proteasome regulato 100.0 9.4E-37 3.2E-41 314.9 28.3 273 266-545 59-362 (420)
67 3mkq_A Coatomer beta'-subunit; 100.0 7.6E-36 2.6E-40 334.5 37.4 284 255-544 5-298 (814)
68 3sfz_A APAF-1, apoptotic pepti 100.0 8.2E-36 2.8E-40 349.6 39.3 304 237-545 634-1031(1249)
69 1pgu_A Actin interacting prote 100.0 2.2E-35 7.4E-40 319.5 39.7 294 240-545 39-363 (615)
70 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-35 6E-40 346.8 41.9 286 256-545 608-910 (1249)
71 3iz6_a 40S ribosomal protein R 100.0 2.3E-36 7.9E-41 308.8 28.8 266 237-509 85-377 (380)
72 4ggc_A P55CDC, cell division c 100.0 1.5E-34 5.2E-39 286.2 40.2 270 266-545 28-312 (318)
73 1p22_A F-BOX/WD-repeat protein 100.0 2.7E-35 9.1E-40 306.4 36.0 271 256-545 126-411 (435)
74 3mkq_A Coatomer beta'-subunit; 100.0 8.5E-35 2.9E-39 326.0 41.8 300 239-545 34-383 (814)
75 3bg1_A Protein SEC13 homolog; 100.0 9E-36 3.1E-40 296.5 28.1 250 257-506 7-292 (316)
76 2pm7_B Protein transport prote 100.0 5.5E-35 1.9E-39 288.1 33.4 247 299-545 3-282 (297)
77 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.4E-34 1.5E-38 297.9 41.5 273 255-545 110-388 (445)
78 2oaj_A Protein SNI1; WD40 repe 100.0 5.4E-35 1.8E-39 329.9 36.4 301 237-545 76-658 (902)
79 3i2n_A WD repeat-containing pr 100.0 4.2E-35 1.4E-39 294.9 30.2 270 238-510 42-356 (357)
80 4aow_A Guanine nucleotide-bind 100.0 1.3E-33 4.4E-38 282.3 40.4 269 237-509 58-339 (340)
81 4aez_A CDC20, WD repeat-contai 100.0 5.5E-34 1.9E-38 293.2 37.4 268 237-511 110-384 (401)
82 1sq9_A Antiviral protein SKI8; 100.0 1E-34 3.4E-39 297.2 31.3 266 238-509 34-397 (397)
83 3dm0_A Maltose-binding peripla 100.0 5.6E-34 1.9E-38 314.2 39.4 267 236-507 401-693 (694)
84 3k26_A Polycomb protein EED; W 100.0 8.6E-35 2.9E-39 293.5 29.9 263 240-506 44-365 (366)
85 4gga_A P55CDC, cell division c 100.0 2.5E-33 8.4E-38 290.2 40.3 266 238-511 123-399 (420)
86 3jrp_A Fusion protein of prote 100.0 4E-34 1.4E-38 290.0 32.9 253 255-507 3-287 (379)
87 3bg1_A Protein SEC13 homolog; 100.0 3.5E-35 1.2E-39 292.3 23.6 246 300-545 8-290 (316)
88 2aq5_A Coronin-1A; WD40 repeat 100.0 2E-34 6.8E-39 296.4 29.6 277 266-545 37-339 (402)
89 3zwl_B Eukaryotic translation 100.0 1.6E-32 5.5E-37 276.9 40.1 263 238-509 52-348 (369)
90 3bws_A Protein LP49; two-domai 100.0 1E-32 3.5E-37 286.0 38.5 297 242-545 101-429 (433)
91 1k8k_C P40, ARP2/3 complex 41 100.0 5.3E-33 1.8E-37 281.4 34.3 269 239-509 29-363 (372)
92 3jrp_A Fusion protein of prote 100.0 3.5E-33 1.2E-37 283.0 31.5 251 295-545 1-284 (379)
93 3ei3_B DNA damage-binding prot 100.0 4.5E-33 1.5E-37 284.1 31.6 259 239-507 95-382 (383)
94 3odt_A Protein DOA1; ubiquitin 100.0 2.8E-32 9.7E-37 269.0 35.3 258 238-511 37-300 (313)
95 4ggc_A P55CDC, cell division c 100.0 1.1E-31 3.7E-36 265.7 38.9 264 238-509 43-317 (318)
96 3vu4_A KMHSV2; beta-propeller 100.0 2.1E-32 7.2E-37 276.8 34.1 274 256-545 12-333 (355)
97 3dwl_C Actin-related protein 2 100.0 9.1E-34 3.1E-38 288.3 23.3 266 238-505 31-377 (377)
98 4a11_B DNA excision repair pro 100.0 5.4E-32 1.9E-36 277.1 34.2 300 239-545 65-402 (408)
99 3gre_A Serine/threonine-protei 100.0 1.8E-33 6.1E-38 292.3 23.4 263 270-545 34-356 (437)
100 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1E-31 3.5E-36 280.7 36.5 272 264-544 5-387 (450)
101 2aq5_A Coronin-1A; WD40 repeat 100.0 2.5E-32 8.4E-37 280.8 28.9 270 237-511 54-346 (402)
102 2j04_A TAU60, YPL007P, hypothe 100.0 8.2E-33 2.8E-37 287.1 25.0 262 261-545 13-294 (588)
103 4e54_B DNA damage-binding prot 100.0 1.2E-32 4E-37 286.5 25.8 267 237-510 139-433 (435)
104 2j04_B YDR362CP, TAU91; beta p 100.0 1.8E-33 6.1E-38 298.0 19.7 256 272-532 170-458 (524)
105 2xyi_A Probable histone-bindin 100.0 8.3E-32 2.8E-36 279.7 31.4 300 243-545 26-407 (430)
106 1p22_A F-BOX/WD-repeat protein 100.0 1.5E-31 5.1E-36 278.1 33.2 273 238-526 151-433 (435)
107 3lrv_A PRE-mRNA-splicing facto 100.0 8.4E-33 2.9E-37 278.2 21.5 265 270-544 43-329 (343)
108 1l0q_A Surface layer protein; 100.0 3.1E-30 1.1E-34 263.5 39.8 262 276-545 3-272 (391)
109 2xyi_A Probable histone-bindin 100.0 1.6E-31 5.4E-36 277.6 30.2 252 257-508 122-411 (430)
110 4h5i_A Guanine nucleotide-exch 100.0 1.1E-30 3.7E-35 265.3 34.0 262 238-508 41-344 (365)
111 3jro_A Fusion protein of prote 100.0 7.3E-32 2.5E-36 299.7 27.5 252 256-507 2-285 (753)
112 1l0q_A Surface layer protein; 100.0 2E-29 6.8E-34 257.5 42.0 269 238-518 10-287 (391)
113 3dw8_B Serine/threonine-protei 100.0 3.8E-31 1.3E-35 275.0 29.5 262 238-506 48-445 (447)
114 2j04_A TAU60, YPL007P, hypothe 100.0 3.6E-32 1.2E-36 282.3 20.9 245 261-537 83-350 (588)
115 1yfq_A Cell cycle arrest prote 100.0 1.2E-30 4.2E-35 261.0 29.6 255 238-504 31-321 (342)
116 3jro_A Fusion protein of prote 100.0 6.8E-31 2.3E-35 291.8 25.6 248 298-545 2-282 (753)
117 4gq1_A NUP37; propeller, trans 100.0 6.9E-31 2.3E-35 269.5 22.2 259 259-540 85-382 (393)
118 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.1E-28 7E-33 255.6 37.8 244 260-506 99-390 (450)
119 3f3f_A Nucleoporin SEH1; struc 100.0 2.7E-29 9.3E-34 250.4 29.6 273 238-511 31-341 (351)
120 3mmy_A MRNA export factor; mRN 100.0 3.8E-29 1.3E-33 252.0 29.7 252 289-545 23-301 (368)
121 3vu4_A KMHSV2; beta-propeller 100.0 3E-29 1E-33 253.6 27.8 245 289-545 3-268 (355)
122 2w18_A PALB2, fancn, partner a 100.0 1.9E-28 6.4E-33 239.7 30.0 259 239-545 62-354 (356)
123 1nir_A Nitrite reductase; hemo 100.0 2.2E-27 7.4E-32 253.1 38.1 301 238-545 157-511 (543)
124 3bws_A Protein LP49; two-domai 100.0 3.1E-27 1.1E-31 244.6 36.4 262 239-507 143-432 (433)
125 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.8E-27 6E-32 245.8 30.3 283 238-530 91-410 (415)
126 3lrv_A PRE-mRNA-splicing facto 100.0 1.5E-27 5.3E-32 239.7 25.8 253 237-507 55-333 (343)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 9.6E-27 3.3E-31 240.3 25.3 272 265-545 64-384 (415)
128 4gq1_A NUP37; propeller, trans 99.9 5.3E-27 1.8E-31 240.5 21.6 224 237-461 108-388 (393)
129 2w18_A PALB2, fancn, partner a 99.9 1.4E-25 4.7E-30 219.5 27.7 222 256-505 104-355 (356)
130 3vgz_A Uncharacterized protein 99.9 3.1E-24 1E-28 215.4 37.4 268 264-538 41-334 (353)
131 1nir_A Nitrite reductase; hemo 99.9 3.2E-25 1.1E-29 236.4 31.5 268 270-545 144-455 (543)
132 3u4y_A Uncharacterized protein 99.9 1.3E-24 4.5E-29 216.4 33.7 274 269-545 3-301 (331)
133 1ri6_A Putative isomerase YBHE 99.9 3.4E-24 1.2E-28 213.8 32.1 266 277-545 7-305 (343)
134 2ecf_A Dipeptidyl peptidase IV 99.9 7.2E-25 2.5E-29 243.1 29.2 274 263-545 36-410 (741)
135 1ri6_A Putative isomerase YBHE 99.9 1.8E-23 6.2E-28 208.5 33.7 289 238-530 13-335 (343)
136 2ojh_A Uncharacterized protein 99.9 2E-24 6.8E-29 210.2 25.5 257 235-498 17-293 (297)
137 2ojh_A Uncharacterized protein 99.9 4.7E-24 1.6E-28 207.5 26.4 252 281-539 18-293 (297)
138 1pby_B Quinohemoprotein amine 99.9 1E-23 3.6E-28 209.7 29.3 262 276-545 2-307 (337)
139 3u4y_A Uncharacterized protein 99.9 6.9E-23 2.3E-27 204.0 33.5 284 238-529 18-326 (331)
140 2ecf_A Dipeptidyl peptidase IV 99.9 1.6E-23 5.5E-28 232.2 28.5 272 265-544 110-455 (741)
141 1xfd_A DIP, dipeptidyl aminope 99.9 2.6E-24 8.8E-29 237.9 21.9 275 265-545 18-390 (723)
142 1k32_A Tricorn protease; prote 99.9 1.7E-23 5.9E-28 240.7 29.4 291 240-545 183-499 (1045)
143 2z3z_A Dipeptidyl aminopeptida 99.9 3E-23 1E-27 228.8 29.6 273 264-545 82-432 (706)
144 3o4h_A Acylamino-acid-releasin 99.9 1.6E-23 5.5E-28 225.8 26.5 268 263-545 21-312 (582)
145 1k32_A Tricorn protease; prote 99.9 5.6E-23 1.9E-27 236.4 30.0 291 241-545 34-406 (1045)
146 3hfq_A Uncharacterized protein 99.9 8.9E-22 3E-26 197.6 32.4 249 261-511 37-323 (347)
147 3hfq_A Uncharacterized protein 99.9 2.1E-21 7.1E-26 194.8 33.5 260 284-544 15-313 (347)
148 3pe7_A Oligogalacturonate lyas 99.9 4.6E-22 1.6E-26 202.6 27.6 286 256-544 23-378 (388)
149 1xfd_A DIP, dipeptidyl aminope 99.9 1.2E-22 4.3E-27 224.3 25.2 292 239-536 36-428 (723)
150 3scy_A Hypothetical bacterial 99.9 1.3E-20 4.5E-25 190.2 36.9 282 239-526 26-360 (361)
151 1jmx_B Amine dehydrogenase; ox 99.9 1.1E-21 3.9E-26 196.1 27.7 270 268-545 4-322 (349)
152 1pby_B Quinohemoprotein amine 99.9 1E-21 3.4E-26 195.3 26.8 262 238-511 9-314 (337)
153 2z3z_A Dipeptidyl aminopeptida 99.9 3.1E-21 1.1E-25 212.6 29.4 258 240-509 101-437 (706)
154 3vgz_A Uncharacterized protein 99.9 2.2E-20 7.5E-25 187.2 32.7 235 305-545 40-300 (353)
155 2oit_A Nucleoporin 214KDA; NH2 99.9 3.9E-21 1.3E-25 199.2 26.1 241 263-505 36-331 (434)
156 3scy_A Hypothetical bacterial 99.9 3.4E-20 1.2E-24 187.1 32.2 266 275-544 13-333 (361)
157 1z68_A Fibroblast activation p 99.9 1.1E-21 3.6E-26 216.9 17.1 271 268-545 20-388 (719)
158 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.1E-19 3.8E-24 184.0 29.8 267 277-545 4-338 (365)
159 3c5m_A Oligogalacturonate lyas 99.9 1.5E-20 5.2E-25 191.5 21.1 271 266-544 38-378 (396)
160 3o4h_A Acylamino-acid-releasin 99.8 3.6E-20 1.2E-24 199.6 21.4 230 304-545 20-273 (582)
161 1z68_A Fibroblast activation p 99.8 2.6E-20 9E-25 205.7 19.8 295 239-545 35-440 (719)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.4E-18 4.8E-23 175.9 30.5 245 262-509 38-343 (365)
163 1jmx_B Amine dehydrogenase; ox 99.8 1.1E-18 3.6E-23 174.4 28.2 260 239-511 20-329 (349)
164 2oit_A Nucleoporin 214KDA; NH2 99.8 3.2E-19 1.1E-23 184.8 23.8 212 285-508 23-279 (434)
165 4a5s_A Dipeptidyl peptidase 4 99.8 1.1E-18 3.9E-23 193.3 27.8 264 265-537 18-382 (740)
166 2oiz_A Aromatic amine dehydrog 99.8 4E-18 1.4E-22 172.3 29.0 278 239-530 30-360 (361)
167 3azo_A Aminopeptidase; POP fam 99.8 2.9E-18 9.8E-23 187.5 26.5 280 258-544 18-363 (662)
168 2oiz_A Aromatic amine dehydrog 99.8 1.9E-17 6.5E-22 167.3 28.3 263 274-545 14-331 (361)
169 3fvz_A Peptidyl-glycine alpha- 99.8 6.5E-17 2.2E-21 161.1 30.7 240 263-507 23-322 (329)
170 4a5s_A Dipeptidyl peptidase 4 99.8 2.3E-17 8E-22 182.7 28.1 289 239-537 35-435 (740)
171 2gop_A Trilobed protease; beta 99.8 5.6E-17 1.9E-21 162.2 27.9 252 265-544 16-327 (347)
172 2dg1_A DRP35, lactonase; beta 99.8 1E-16 3.6E-21 159.5 28.7 269 264-538 6-300 (333)
173 1q7f_A NHL, brain tumor CG1071 99.8 7.2E-16 2.5E-20 149.9 33.5 238 260-508 26-281 (286)
174 1q7f_A NHL, brain tumor CG1071 99.8 7.1E-16 2.4E-20 150.0 33.0 234 303-545 27-277 (286)
175 1qks_A Cytochrome CD1 nitrite 99.8 2.8E-15 9.5E-20 159.5 39.6 300 239-545 176-535 (567)
176 3fvz_A Peptidyl-glycine alpha- 99.8 4.7E-16 1.6E-20 154.9 28.5 234 305-545 23-319 (329)
177 2gop_A Trilobed protease; beta 99.8 6.9E-16 2.4E-20 154.3 29.2 249 239-519 42-342 (347)
178 3pe7_A Oligogalacturonate lyas 99.7 1.1E-16 3.8E-21 162.6 23.2 258 241-507 61-384 (388)
179 2z2n_A Virginiamycin B lyase; 99.7 3.3E-14 1.1E-18 138.4 39.9 275 259-543 10-291 (299)
180 3azo_A Aminopeptidase; POP fam 99.7 1.6E-16 5.3E-21 173.7 25.1 264 241-513 48-375 (662)
181 2dg1_A DRP35, lactonase; beta 99.7 1.3E-14 4.5E-19 144.2 35.9 244 256-506 37-315 (333)
182 3dsm_A Uncharacterized protein 99.7 3.4E-15 1.2E-19 148.6 31.1 251 283-545 15-299 (328)
183 2xdw_A Prolyl endopeptidase; a 99.7 7E-16 2.4E-20 170.0 28.4 244 262-509 123-416 (710)
184 3e5z_A Putative gluconolactona 99.7 5.3E-15 1.8E-19 144.6 29.0 242 258-511 22-290 (296)
185 3e5z_A Putative gluconolactona 99.7 1.3E-14 4.4E-19 141.9 30.4 238 297-543 19-282 (296)
186 3dsm_A Uncharacterized protein 99.7 9.4E-15 3.2E-19 145.4 29.8 280 238-525 15-319 (328)
187 1qks_A Cytochrome CD1 nitrite 99.7 7.1E-14 2.4E-18 148.7 37.8 265 273-545 165-474 (567)
188 2bkl_A Prolyl endopeptidase; m 99.7 7.8E-16 2.7E-20 169.3 21.5 247 261-514 118-404 (695)
189 3c5m_A Oligogalacturonate lyas 99.7 1.3E-15 4.4E-20 154.9 20.8 259 241-511 61-388 (396)
190 2qc5_A Streptogramin B lactona 99.7 5.2E-13 1.8E-17 129.9 38.2 274 260-544 16-296 (300)
191 1rwi_B Serine/threonine-protei 99.7 2.1E-14 7.1E-19 138.0 26.1 238 265-509 25-266 (270)
192 2mad_H Methylamine dehydrogena 99.7 4.8E-13 1.6E-17 135.3 36.8 266 271-545 28-347 (373)
193 3sjl_D Methylamine dehydrogena 99.7 2.6E-14 8.9E-19 143.2 26.4 271 269-545 38-360 (386)
194 2xdw_A Prolyl endopeptidase; a 99.7 3.3E-14 1.1E-18 156.6 29.8 268 273-545 81-411 (710)
195 1rwi_B Serine/threonine-protei 99.6 3.3E-14 1.1E-18 136.6 24.6 233 307-545 25-261 (270)
196 3no2_A Uncharacterized protein 99.6 1.5E-13 5E-18 133.1 28.9 240 274-523 4-271 (276)
197 2mad_H Methylamine dehydrogena 99.6 5.4E-12 1.9E-16 127.5 38.6 257 241-513 48-356 (373)
198 2bkl_A Prolyl endopeptidase; m 99.6 3.1E-14 1E-18 156.5 23.8 268 272-545 76-394 (695)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 8E-13 2.7E-17 129.8 31.1 240 260-508 14-300 (314)
200 1yr2_A Prolyl oligopeptidase; 99.6 1.1E-13 3.9E-18 153.1 26.4 245 262-513 161-447 (741)
201 2z2n_A Virginiamycin B lyase; 99.6 5.6E-12 1.9E-16 122.5 33.7 236 301-545 10-252 (299)
202 3sjl_D Methylamine dehydrogena 99.6 8.7E-13 3E-17 132.2 28.0 275 240-528 59-384 (386)
203 3no2_A Uncharacterized protein 99.6 6.8E-13 2.3E-17 128.4 25.0 210 316-536 4-231 (276)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.6E-12 5.5E-17 127.6 28.0 235 305-545 17-296 (314)
205 3c75_H MADH, methylamine dehyd 99.5 7.7E-13 2.6E-17 134.9 24.4 266 273-545 82-399 (426)
206 1yr2_A Prolyl oligopeptidase; 99.5 8.9E-13 3E-17 145.9 26.1 267 273-545 116-438 (741)
207 3hrp_A Uncharacterized protein 99.5 8.8E-12 3E-16 127.7 30.9 230 306-544 131-406 (409)
208 3hrp_A Uncharacterized protein 99.5 2E-11 6.9E-16 125.0 32.5 232 264-505 131-408 (409)
209 3iuj_A Prolyl endopeptidase; h 99.5 1.8E-12 6.1E-17 142.3 25.6 242 262-513 127-411 (693)
210 2qc5_A Streptogramin B lactona 99.5 1.1E-10 3.6E-15 113.4 34.7 234 303-545 17-257 (300)
211 2qe8_A Uncharacterized protein 99.5 1.3E-12 4.4E-17 130.8 21.2 261 264-541 17-314 (343)
212 3g4e_A Regucalcin; six bladed 99.5 5.4E-11 1.8E-15 116.3 32.4 228 301-536 8-260 (297)
213 3g4e_A Regucalcin; six bladed 99.5 7.2E-11 2.4E-15 115.4 32.8 229 261-497 10-262 (297)
214 1xip_A Nucleoporin NUP159; bet 99.5 1E-12 3.5E-17 132.1 19.7 172 265-451 39-232 (388)
215 2ghs_A AGR_C_1268P; regucalcin 99.5 2.2E-10 7.5E-15 113.6 34.0 220 266-498 51-293 (326)
216 3c75_H MADH, methylamine dehyd 99.5 1.3E-11 4.4E-16 125.8 25.0 259 240-512 99-407 (426)
217 3dr2_A Exported gluconolactona 99.4 3.1E-11 1.1E-15 118.4 26.2 234 299-543 38-302 (305)
218 2ghs_A AGR_C_1268P; regucalcin 99.4 3.6E-10 1.2E-14 112.0 33.0 220 307-536 50-290 (326)
219 3dr2_A Exported gluconolactona 99.4 5.4E-11 1.9E-15 116.7 26.7 231 260-504 41-303 (305)
220 1mda_H Methylamine dehydrogena 99.4 8.1E-12 2.8E-16 125.2 20.3 266 241-527 47-366 (368)
221 3q7m_A Lipoprotein YFGL, BAMB; 99.4 7.9E-10 2.7E-14 111.6 31.5 255 274-545 102-375 (376)
222 1mda_H Methylamine dehydrogena 99.3 5.2E-11 1.8E-15 119.3 19.3 246 286-545 47-343 (368)
223 1kb0_A Quinohemoprotein alcoho 99.3 3.8E-10 1.3E-14 123.0 25.9 263 275-545 77-504 (677)
224 2hz6_A Endoplasmic reticulum t 99.3 2E-14 6.7E-19 145.5 -7.5 223 274-509 8-238 (369)
225 1npe_A Nidogen, entactin; glyc 99.3 1.6E-08 5.4E-13 96.8 34.1 247 276-530 2-263 (267)
226 3iuj_A Prolyl endopeptidase; h 99.3 1.7E-10 5.8E-15 126.5 22.8 236 303-545 126-402 (693)
227 1yiq_A Quinohemoprotein alcoho 99.3 3.9E-10 1.4E-14 123.1 25.3 265 275-545 70-502 (689)
228 1xip_A Nucleoporin NUP159; bet 99.3 5.5E-11 1.9E-15 119.6 16.9 170 350-536 39-232 (388)
229 3q7m_A Lipoprotein YFGL, BAMB; 99.3 2.6E-09 9E-14 107.7 29.4 254 275-545 53-334 (376)
230 2ece_A 462AA long hypothetical 99.3 2E-09 6.9E-14 108.6 27.6 223 270-495 88-399 (462)
231 3hxj_A Pyrrolo-quinoline quino 99.2 2.9E-10 9.9E-15 112.2 19.5 259 264-544 60-320 (330)
232 1yiq_A Quinohemoprotein alcoho 99.2 3.2E-09 1.1E-13 116.0 27.6 256 275-536 121-537 (689)
233 1kb0_A Quinohemoprotein alcoho 99.2 1.4E-09 4.7E-14 118.6 24.7 253 274-533 127-535 (677)
234 3hxj_A Pyrrolo-quinoline quino 99.2 3.6E-10 1.2E-14 111.5 16.4 256 269-545 25-281 (330)
235 1fwx_A Nitrous oxide reductase 99.2 1.5E-09 5E-14 113.3 21.4 257 278-537 18-407 (595)
236 2ece_A 462AA long hypothetical 99.2 1.6E-08 5.3E-13 102.1 27.9 219 315-536 93-399 (462)
237 2qe8_A Uncharacterized protein 99.2 8E-10 2.8E-14 110.3 18.1 220 306-545 17-275 (343)
238 1fwx_A Nitrous oxide reductase 99.1 4.4E-09 1.5E-13 109.7 21.9 234 274-511 100-435 (595)
239 2iwa_A Glutamine cyclotransfer 99.1 7.1E-08 2.4E-12 91.5 26.3 204 296-508 10-238 (266)
240 1npe_A Nidogen, entactin; glyc 99.1 2.2E-07 7.6E-12 88.7 30.2 222 318-545 2-235 (267)
241 2hz6_A Endoplasmic reticulum t 99.1 9.4E-11 3.2E-15 118.4 6.0 201 316-530 8-216 (369)
242 1kv9_A Type II quinohemoprotei 99.1 3.5E-08 1.2E-12 107.4 26.6 262 275-545 66-485 (668)
243 4a2l_A BT_4663, two-component 99.0 1.8E-06 6.1E-11 96.1 37.4 267 262-544 213-522 (795)
244 4a2l_A BT_4663, two-component 99.0 2.7E-06 9.2E-11 94.6 38.7 265 263-544 262-567 (795)
245 2ad6_A Methanol dehydrogenase 99.0 1.1E-07 3.9E-12 101.2 25.8 261 275-545 62-491 (571)
246 2iwa_A Glutamine cyclotransfer 99.0 3.1E-07 1.1E-11 87.1 25.8 202 253-463 9-238 (266)
247 2fp8_A Strictosidine synthase; 99.0 6.3E-07 2.2E-11 88.2 28.5 234 265-509 20-315 (322)
248 2fp8_A Strictosidine synthase; 99.0 5.8E-07 2E-11 88.5 28.2 232 307-544 20-309 (322)
249 3nol_A Glutamine cyclotransfer 98.9 1.9E-07 6.5E-12 87.6 22.4 192 296-497 32-245 (262)
250 1w6s_A Methanol dehydrogenase 98.9 5.5E-07 1.9E-11 96.0 28.5 263 275-545 62-500 (599)
251 2p4o_A Hypothetical protein; p 98.9 2.1E-06 7.3E-11 83.7 30.6 233 295-538 22-278 (306)
252 3nol_A Glutamine cyclotransfer 98.9 4.2E-07 1.4E-11 85.2 23.5 196 253-459 31-251 (262)
253 3v9f_A Two-component system se 98.9 4.6E-06 1.6E-10 92.6 36.3 274 263-545 257-565 (781)
254 3nok_A Glutaminyl cyclase; bet 98.9 3.8E-07 1.3E-11 85.5 21.5 179 307-497 56-255 (268)
255 2p4o_A Hypothetical protein; p 98.8 6E-06 2.1E-10 80.5 30.8 227 264-498 32-279 (306)
256 3v64_C Agrin; beta propeller, 98.8 8.5E-06 2.9E-10 81.1 32.0 238 263-509 33-277 (349)
257 1kv9_A Type II quinohemoprotei 98.8 7.1E-07 2.4E-11 97.0 25.7 257 275-536 117-520 (668)
258 1ijq_A LDL receptor, low-densi 98.8 2.7E-05 9.4E-10 76.2 34.9 229 277-510 3-241 (316)
259 3mbr_X Glutamine cyclotransfer 98.8 2.6E-06 8.9E-11 79.1 25.2 186 341-537 12-223 (243)
260 3nok_A Glutaminyl cyclase; bet 98.8 7.5E-07 2.6E-11 83.5 21.6 176 350-536 56-253 (268)
261 3mbr_X Glutamine cyclotransfer 98.8 2.2E-06 7.6E-11 79.6 24.2 191 296-497 10-224 (243)
262 1k3i_A Galactose oxidase precu 98.8 1E-07 3.4E-12 103.7 17.5 265 268-537 190-530 (656)
263 3v65_B Low-density lipoprotein 98.8 8.4E-06 2.9E-10 82.4 30.4 237 266-511 79-322 (386)
264 1flg_A Protein (quinoprotein e 98.8 5.2E-06 1.8E-10 88.5 30.1 263 276-545 69-513 (582)
265 3v9f_A Two-component system se 98.8 1.7E-05 5.9E-10 87.9 34.8 273 263-544 162-474 (781)
266 2ad6_A Methanol dehydrogenase 98.8 1.7E-06 5.9E-11 92.1 25.3 252 275-533 115-522 (571)
267 2xbg_A YCF48-like protein; pho 98.7 5.1E-05 1.7E-09 74.7 32.8 265 263-545 35-319 (327)
268 3tc9_A Hypothetical hydrolase; 98.7 5.3E-06 1.8E-10 85.1 26.0 233 307-544 138-426 (430)
269 1ijq_A LDL receptor, low-densi 98.7 7.8E-05 2.7E-09 73.0 32.9 219 319-544 3-234 (316)
270 3v65_B Low-density lipoprotein 98.7 2.6E-05 8.9E-10 78.7 29.8 227 310-544 81-314 (386)
271 3v64_C Agrin; beta propeller, 98.7 4.1E-05 1.4E-09 76.1 30.6 227 309-543 37-270 (349)
272 3p5b_L Low density lipoprotein 98.6 0.00014 4.8E-09 73.7 34.5 230 277-511 85-324 (400)
273 3sov_A LRP-6, low-density lipo 98.6 3.6E-05 1.2E-09 75.4 29.1 227 277-510 6-241 (318)
274 1w6s_A Methanol dehydrogenase 98.6 6.2E-06 2.1E-10 87.9 24.8 252 278-536 124-535 (599)
275 1flg_A Protein (quinoprotein e 98.6 1.6E-05 5.6E-10 84.7 27.1 257 275-536 117-548 (582)
276 3qqz_A Putative uncharacterize 98.6 3.3E-05 1.1E-09 72.7 25.8 199 343-544 21-249 (255)
277 2xe4_A Oligopeptidase B; hydro 98.6 6.1E-06 2.1E-10 91.0 24.2 238 265-511 175-462 (751)
278 3p5b_L Low density lipoprotein 98.5 0.00018 6.3E-09 72.8 32.3 219 319-544 85-316 (400)
279 4hw6_A Hypothetical protein, I 98.5 4.2E-05 1.4E-09 78.4 27.2 233 307-544 140-429 (433)
280 3sov_A LRP-6, low-density lipo 98.5 0.00013 4.4E-09 71.4 29.6 221 319-544 6-234 (318)
281 3amr_A 3-phytase; beta-propell 98.5 4.4E-05 1.5E-09 74.6 25.5 195 274-473 39-272 (355)
282 3qqz_A Putative uncharacterize 98.5 0.00042 1.4E-08 65.1 30.6 201 257-459 20-250 (255)
283 3tc9_A Hypothetical hydrolase; 98.5 7.7E-05 2.6E-09 76.4 27.6 234 265-506 138-429 (430)
284 3m0c_C LDL receptor, low-densi 98.5 0.00031 1.1E-08 77.1 33.3 230 277-511 397-636 (791)
285 3kya_A Putative phosphatase; s 98.4 0.00019 6.3E-09 74.1 27.6 232 307-544 140-471 (496)
286 4hw6_A Hypothetical protein, I 98.4 0.00023 7.9E-09 72.9 28.1 234 265-506 140-432 (433)
287 2xe4_A Oligopeptidase B; hydro 98.3 4.2E-05 1.4E-09 84.3 22.8 190 350-544 175-394 (751)
288 3m0c_C LDL receptor, low-densi 98.3 0.00095 3.2E-08 73.3 32.5 216 319-542 397-626 (791)
289 1k3i_A Galactose oxidase precu 98.3 3.3E-05 1.1E-09 83.8 20.3 228 310-538 190-476 (656)
290 4a0p_A LRP6, LRP-6, low-densit 98.3 0.0013 4.3E-08 70.7 31.3 218 319-543 8-232 (628)
291 3kya_A Putative phosphatase; s 98.2 0.00064 2.2E-08 70.0 26.9 241 265-511 140-479 (496)
292 3s94_A LRP-6, low-density lipo 98.2 0.00091 3.1E-08 71.6 28.3 228 277-510 11-246 (619)
293 3s94_A LRP-6, low-density lipo 98.2 0.0045 1.5E-07 66.2 33.5 276 264-543 84-418 (619)
294 4a0p_A LRP6, LRP-6, low-densit 98.2 0.0051 1.7E-07 65.9 33.7 224 277-509 8-239 (628)
295 2ism_A Putative oxidoreductase 98.2 0.00074 2.5E-08 67.0 25.2 226 263-494 30-332 (352)
296 2xbg_A YCF48-like protein; pho 98.1 0.0013 4.5E-08 64.4 26.1 231 263-505 79-320 (327)
297 1n7d_A LDL receptor, low-densi 98.1 9.3E-06 3.2E-10 88.5 10.1 225 284-512 385-619 (699)
298 3a9g_A Putative uncharacterize 98.0 0.0057 1.9E-07 60.6 28.7 229 263-494 28-329 (354)
299 2xzh_A Clathrin heavy chain 1; 98.0 0.011 3.9E-07 56.6 31.9 247 284-541 48-325 (365)
300 3amr_A 3-phytase; beta-propell 98.0 0.002 6.8E-08 62.9 24.3 180 362-545 41-260 (355)
301 3ott_A Two-component system se 98.0 0.021 7.2E-07 62.7 36.0 260 263-539 21-299 (758)
302 3ei3_A DNA damage-binding prot 98.0 0.036 1.2E-06 63.5 37.4 167 372-544 808-995 (1158)
303 2p9w_A MAL S 1 allergenic prot 97.9 0.0046 1.6E-07 59.8 25.1 193 266-461 15-264 (334)
304 1bpo_A Protein (clathrin); cla 97.9 0.022 7.7E-07 56.7 32.1 247 284-541 47-324 (494)
305 2p9w_A MAL S 1 allergenic prot 97.9 0.006 2E-07 59.0 25.0 207 303-511 10-269 (334)
306 2ism_A Putative oxidoreductase 97.9 0.0049 1.7E-07 61.0 25.1 224 306-536 31-333 (352)
307 3ei3_A DNA damage-binding prot 97.9 0.025 8.5E-07 64.8 33.8 272 263-545 553-910 (1158)
308 1n7d_A LDL receptor, low-densi 97.9 5.5E-05 1.9E-09 82.4 11.4 214 325-544 384-610 (699)
309 3a9g_A Putative uncharacterize 97.8 0.011 3.7E-07 58.6 27.0 225 306-536 29-330 (354)
310 3sre_A PON1, serum paraoxonase 97.8 0.0042 1.4E-07 61.3 23.1 177 325-505 81-296 (355)
311 2g8s_A Glucose/sorbosone dehyd 97.8 0.0083 2.9E-07 59.4 24.8 231 306-541 18-347 (353)
312 3das_A Putative oxidoreductase 97.7 0.039 1.3E-06 54.1 28.6 230 304-536 30-326 (347)
313 3ott_A Two-component system se 97.7 0.089 3.1E-06 57.7 37.8 268 263-544 145-444 (758)
314 2g8s_A Glucose/sorbosone dehyd 97.7 0.0094 3.2E-07 59.0 23.8 222 265-493 19-339 (353)
315 2vpj_A Kelch-like protein 12; 97.7 0.0051 1.8E-07 59.1 20.7 228 274-512 14-283 (301)
316 3das_A Putative oxidoreductase 97.6 0.072 2.5E-06 52.2 27.6 236 257-494 25-325 (347)
317 3ii7_A Kelch-like protein 7; p 97.5 0.019 6.5E-07 55.2 22.9 225 276-511 13-276 (306)
318 3sbq_A Nitrous-oxide reductase 97.5 0.021 7.3E-07 58.6 23.1 258 278-536 73-453 (638)
319 3sre_A PON1, serum paraoxonase 97.5 0.074 2.5E-06 52.3 26.6 193 265-461 51-297 (355)
320 2xn4_A Kelch-like protein 2; s 97.5 0.012 4E-07 56.6 20.2 228 275-513 16-282 (302)
321 2xzh_A Clathrin heavy chain 1; 97.4 0.092 3.2E-06 50.4 34.6 233 269-511 72-336 (365)
322 1bpo_A Protein (clathrin); cla 97.4 0.14 4.9E-06 51.0 31.9 234 268-511 70-335 (494)
323 2vpj_A Kelch-like protein 12; 97.3 0.011 3.8E-07 56.7 18.4 215 316-539 14-264 (301)
324 4asc_A Kelch repeat and BTB do 97.3 0.035 1.2E-06 53.6 21.4 225 277-513 7-283 (315)
325 3pbp_A Nucleoporin NUP82; beta 97.2 0.022 7.4E-07 56.8 18.8 132 411-542 40-206 (452)
326 3ii7_A Kelch-like protein 7; p 97.2 0.029 9.9E-07 53.9 20.0 210 318-538 13-257 (306)
327 1zgk_A Kelch-like ECH-associat 97.1 0.022 7.5E-07 54.9 18.1 231 272-513 22-293 (308)
328 1cru_A Protein (soluble quinop 97.1 0.26 9E-06 50.3 27.0 104 306-409 27-162 (454)
329 3s25_A Hypothetical 7-bladed b 97.1 0.13 4.4E-06 49.4 23.2 233 273-536 23-280 (302)
330 2woz_A Kelch repeat and BTB do 96.9 0.16 5.4E-06 49.0 22.4 226 277-513 18-293 (318)
331 2xn4_A Kelch-like protein 2; s 96.9 0.091 3.1E-06 50.2 20.1 183 274-463 61-277 (302)
332 3s25_A Hypothetical 7-bladed b 96.9 0.27 9.3E-06 47.2 23.1 176 269-463 58-256 (302)
333 4asc_A Kelch repeat and BTB do 96.9 0.13 4.4E-06 49.6 21.0 210 319-538 7-253 (315)
334 2uvk_A YJHT; unknown function, 96.8 0.042 1.4E-06 54.0 17.6 231 274-512 19-347 (357)
335 3pbp_A Nucleoporin NUP82; beta 96.8 0.13 4.6E-06 51.2 20.2 142 357-503 29-208 (452)
336 2be1_A Serine/threonine-protei 96.8 0.039 1.3E-06 53.8 16.1 191 318-511 11-235 (339)
337 1tl2_A L10, protein (tachylect 96.7 0.079 2.7E-06 47.9 16.4 172 361-541 4-203 (236)
338 1xi4_A Clathrin heavy chain; a 96.5 0.12 4.2E-06 59.1 19.6 218 284-511 47-293 (1630)
339 1zgk_A Kelch-like ECH-associat 96.5 0.088 3E-06 50.6 16.4 214 316-539 24-273 (308)
340 1xi4_A Clathrin heavy chain; a 96.4 0.12 4.2E-06 59.1 19.0 235 269-511 71-335 (1630)
341 1cru_A Protein (soluble quinop 96.4 0.99 3.4E-05 45.9 29.1 106 263-368 26-163 (454)
342 2woz_A Kelch repeat and BTB do 96.4 0.22 7.4E-06 48.0 19.0 202 328-538 25-263 (318)
343 1tl2_A L10, protein (tachylect 96.4 0.18 6.1E-06 45.6 16.2 175 317-501 4-204 (236)
344 2be1_A Serine/threonine-protei 96.3 0.14 4.9E-06 49.8 16.9 186 276-464 11-233 (339)
345 2uvk_A YJHT; unknown function, 96.0 0.36 1.2E-05 47.2 18.2 185 274-464 65-344 (357)
346 2zwa_A Leucine carboxyl methyl 95.9 0.22 7.4E-06 54.0 17.7 222 315-537 396-674 (695)
347 3b7f_A Glycosyl hydrolase, BNR 95.2 2.8 9.5E-05 41.5 25.5 255 264-526 55-391 (394)
348 3qhy_B Beta-lactamase inhibito 94.3 1.3 4.5E-05 41.8 15.9 240 265-529 25-265 (282)
349 2wg3_C Hedgehog-interacting pr 94.0 6 0.0002 40.2 29.5 232 264-495 14-354 (463)
350 4hvt_A Ritya.17583.B, post-pro 93.9 6.5 0.00022 42.3 22.0 235 271-511 137-433 (711)
351 2zwa_A Leucine carboxyl methyl 93.8 0.77 2.6E-05 49.6 14.7 156 269-425 446-639 (695)
352 3qhy_B Beta-lactamase inhibito 93.7 1.9 6.6E-05 40.6 15.7 217 306-544 24-242 (282)
353 3sbq_A Nitrous-oxide reductase 93.7 0.51 1.8E-05 48.6 11.8 126 349-476 323-491 (638)
354 3q6k_A 43.2 kDa salivary prote 93.0 7.4 0.00025 38.3 24.2 164 372-536 124-342 (381)
355 2wg3_C Hedgehog-interacting pr 92.3 11 0.00036 38.3 28.8 229 306-536 14-354 (463)
356 3b7f_A Glycosyl hydrolase, BNR 92.0 9.9 0.00034 37.4 27.8 211 277-495 24-297 (394)
357 3uc1_A DNA gyrase subunit A; D 91.4 11 0.00036 36.3 22.2 262 276-539 4-321 (327)
358 4hvt_A Ritya.17583.B, post-pro 89.4 21 0.00072 38.4 19.5 224 308-536 131-415 (711)
359 1zi0_A DNA gyrase subunit A; b 88.3 18 0.00061 34.4 22.9 232 273-507 1-277 (307)
360 1sqj_A OXG-RCBH, oligoxylogluc 88.0 34 0.0012 37.3 25.1 151 263-415 14-195 (789)
361 3no0_A DNA gyrase subunit A; D 86.2 22 0.00074 33.2 19.1 196 307-507 25-246 (276)
362 1wp5_A Topoisomerase IV; broke 85.7 26 0.00087 33.5 21.9 232 273-507 3-277 (323)
363 1suu_A DNA gyrase subunit A; t 85.3 26 0.00089 33.3 26.2 186 273-462 6-231 (312)
364 3l6v_A GYRA, DNA gyrase subuni 84.2 33 0.0011 33.5 23.8 232 271-505 3-314 (370)
365 3uc1_A DNA gyrase subunit A; D 79.8 43 0.0015 32.0 22.4 194 266-462 44-279 (327)
366 1sqj_A OXG-RCBH, oligoxylogluc 79.3 76 0.0026 34.5 24.4 145 305-451 14-188 (789)
367 3no0_A DNA gyrase subunit A; D 77.1 47 0.0016 30.8 23.1 194 264-461 24-245 (276)
368 3l6v_A GYRA, DNA gyrase subuni 76.8 58 0.002 31.7 22.2 226 313-541 3-309 (370)
369 3kci_A Probable E3 ubiquitin-p 72.7 73 0.0025 31.0 29.6 229 307-544 54-341 (389)
370 1zi0_A DNA gyrase subunit A; b 66.9 85 0.0029 29.5 23.4 223 315-541 1-270 (307)
371 4gq2_M Nucleoporin NUP120; bet 64.0 26 0.00089 39.1 10.2 38 264-301 236-273 (950)
372 1suu_A DNA gyrase subunit A; t 60.7 1.1E+02 0.0038 28.7 26.0 190 315-507 6-231 (312)
373 3q6k_A 43.2 kDa salivary prote 58.3 1.4E+02 0.0048 29.1 24.7 166 285-451 123-342 (381)
374 3kci_A Probable E3 ubiquitin-p 57.0 1.4E+02 0.0049 28.8 27.8 195 307-507 106-345 (389)
375 3mvd_K Regulator of chromosome 53.9 1.7E+02 0.0057 28.6 35.0 225 307-544 76-370 (423)
376 2cn3_A Xyloglucanase, beta-1,4 50.3 2.6E+02 0.0089 29.8 23.9 103 307-411 24-153 (737)
377 4a9z_A Tumor protein 63; trans 49.3 9.7 0.00033 26.0 2.1 12 62-73 15-26 (61)
378 4h3o_A Lectin; cadmium, plant 49.0 88 0.003 24.0 9.9 25 437-462 54-78 (105)
379 3zwu_A Alkaline phosphatase PH 44.8 67 0.0023 33.5 8.8 58 266-323 478-548 (592)
380 4a9v_A PHOX; hydrolase, beta-p 43.9 88 0.003 32.4 9.3 59 393-451 478-549 (592)
381 4a9v_A PHOX; hydrolase, beta-p 43.5 98 0.0034 32.1 9.6 60 264-323 476-548 (592)
382 3mez_B Mannose-specific lectin 43.2 1.1E+02 0.0039 23.6 10.6 59 403-462 25-84 (113)
383 4gq2_M Nucleoporin NUP120; bet 41.9 4E+02 0.014 29.5 23.8 37 393-429 238-274 (950)
384 3zwu_A Alkaline phosphatase PH 41.8 70 0.0024 33.4 8.4 58 393-450 478-548 (592)
385 4fhn_B Nucleoporin NUP120; pro 41.1 55 0.0019 37.3 8.2 37 393-429 240-276 (1139)
386 1wp5_A Topoisomerase IV; broke 39.6 2.5E+02 0.0085 26.5 23.1 194 266-462 41-277 (323)
387 4fhn_B Nucleoporin NUP120; pro 38.5 23 0.00078 40.5 4.5 38 264-301 238-275 (1139)
388 1zvt_A Topoisomerase IV subuni 37.5 2.3E+02 0.008 25.6 12.7 141 319-462 4-163 (256)
389 3f7f_A Nucleoporin NUP120; nuc 36.9 50 0.0017 35.2 6.4 37 265-303 223-259 (729)
390 1zvt_A Topoisomerase IV subuni 36.8 2.4E+02 0.0082 25.5 13.9 142 277-421 4-163 (256)
391 4d9s_A UVB-resistance protein 35.2 3.2E+02 0.011 26.5 29.1 229 305-544 15-301 (406)
392 3f7f_A Nucleoporin NUP120; nuc 32.9 1.6E+02 0.0054 31.5 9.3 61 401-463 230-306 (729)
393 4d9s_A UVB-resistance protein 28.6 4.1E+02 0.014 25.7 35.6 267 264-544 16-353 (406)
394 3mez_A Mannose-specific lectin 25.1 2.3E+02 0.008 21.7 7.3 24 437-460 53-76 (111)
395 2cn3_A Xyloglucanase, beta-1,4 24.9 6.4E+02 0.022 26.7 28.4 103 265-368 24-151 (737)
396 3dzw_A Agglutinin; lectin, man 21.8 2.7E+02 0.0091 21.2 10.3 25 436-461 52-76 (109)
397 3p57_P Histone acetyltransfera 20.4 46 0.0016 26.2 1.9 14 67-80 85-98 (112)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.9e-46 Score=383.94 Aligned_cols=284 Identities=26% Similarity=0.485 Sum_probs=266.4
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 009059 257 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 336 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~ 336 (545)
..+.+|.++|++++|+|++.+||+|+.|+.|+|||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECCCeEE
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
... +..+.+|...|.+++|+|++. ++++|+.|+.|++||++++.++..+..+ ..+.++.+++++..+++++.|+.|+
T Consensus 182 ~~~-~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 182 FEC-IRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp SCE-EECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred Cce-eEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 664 888999999999999999975 5559999999999999999998888744 4689999999999999999999999
Q ss_pred EEECCCCEEEEEecCCCCCEEEEEEcCC--------------------CCEEEEEe-CCcEEEEEcCCCCCcceEEEEee
Q 009059 416 ILDVETQVCRLKLQGHKNQVHSVCWNTS--------------------GEYLASVS-DELVRVWSIGSGSKGECIHELSC 474 (545)
Q Consensus 416 i~d~~~~~~~~~~~~h~~~I~~l~~sp~--------------------g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~ 474 (545)
+||++++.+...+.+|...|.+++|+|+ +.+|++++ |+.|++||++++ .++..+.+
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~~~ 336 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVG 336 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEEC
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEEEEC
Confidence 9999999999999999999999999996 67899999 999999999887 78889999
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 475 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 475 ~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|...|.+++|+|++++|++++.|+.|++||+.+++.+ .+.+|...|++++|+|++.+|++|+.||+|+||+
T Consensus 337 h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 337 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 9999999999999999999999999999999988876 7789999999999999999999999999999997
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.9e-45 Score=368.04 Aligned_cols=288 Identities=19% Similarity=0.367 Sum_probs=262.9
Q ss_pred eEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 009059 253 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 332 (545)
Q Consensus 253 ~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vw 332 (545)
++....+++|.+.|++++|+||+++|++|+.||.|+|||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCC---eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEE
Q 009059 333 DTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAA 408 (545)
Q Consensus 333 d~~~~~---~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~ 408 (545)
++.+.. .....+.+|.+.|.++.|++++ . +++++.|+.|++||+.+++++..+. +...+.+++|+|++..++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN-Q-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETT-E-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCC-c-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 998654 2356778999999999999875 3 5688899999999999999988886 45679999999999999999
Q ss_pred ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEee--CCCceEEEEEc
Q 009059 409 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFH 485 (545)
Q Consensus 409 ~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~--~~~~v~~~~~s 485 (545)
+.|+.|++||++++..+..+.+|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+.. +...|.+++|+
T Consensus 203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s 279 (340)
T 1got_B 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFS 279 (340)
T ss_dssp ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEEC
T ss_pred eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---cEEEEEccCCcccceEEEEEC
Confidence 9999999999999999999999999999999999999999999 999999999876 44555442 23479999999
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 486 PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 486 p~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|++++|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++|+.||.|+|||
T Consensus 280 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999988877 7889999999999999999999999999999997
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.4e-45 Score=362.70 Aligned_cols=286 Identities=18% Similarity=0.325 Sum_probs=261.5
Q ss_pred EEEeecCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCeE--EEEeccCCccEEEEEEcCCCCEEEEEeCCCe
Q 009059 255 EFQLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRT 328 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spd----g~~latg~~dg~I~lwd~~~~~~--~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~ 328 (545)
.++.+.+|.+.|++++|+|+ +.+||+|+.|++|+||++...+. ...+.+|...|.+++|++++.++++++.|++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 34667899999999999984 67999999999999999987654 4578999999999999999999999999999
Q ss_pred EEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEE
Q 009059 329 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILA 407 (545)
Q Consensus 329 I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~ 407 (545)
|++||+.+++. +..+..|...+.+++|+|++. ++++++.||.|++||+++++....+..+ ..+.+++|+|++.+|++
T Consensus 104 i~lWd~~~~~~-~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 104 IRLWDLENGKQ-IKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp EEEEETTTTEE-EEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred EEEEECCCCCE-EEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence 99999998764 778888999999999999976 5558999999999999999888777644 45899999999999999
Q ss_pred EECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcC
Q 009059 408 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 486 (545)
Q Consensus 408 ~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp 486 (545)
++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++ |+.|++||++++ .++..+.+|...|.+++|+|
T Consensus 182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~sp 258 (321)
T 3ow8_A 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---NLAGTLSGHASWVLNVAFCP 258 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECT
T ss_pred EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---ceeEEEcCCCCceEEEEECC
Confidence 99999999999999999999999999999999999999999999 999999999877 67788899999999999999
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 487 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 487 ~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++.+|++++.|+.|++||+.+++++ .+.+|...|.+++|+|++++|++++.||.|+|||
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 9999999999999999999999888 7789999999999999999999999999999997
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.2e-43 Score=359.20 Aligned_cols=288 Identities=17% Similarity=0.282 Sum_probs=259.5
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 254 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
.....+.+|.+.|+|++|+|++++||+|+.|++|+|||..+++....+..|...|.+++|+|++.+|++++.|+.|++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-----eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEEeC--CCCEE
Q 009059 334 TENPD-----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQP--RLGRI 405 (545)
Q Consensus 334 ~~~~~-----~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp--~~~~l 405 (545)
+.... .....+.+|...|.++.|+|++.. +++++.|++|++||+++++++..+.. ...+.++.|+| ++..|
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ-ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 86431 234567789999999999999755 55899999999999999999988874 45689999987 46799
Q ss_pred EEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC--CCceEEE
Q 009059 406 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--GNKFHSC 482 (545)
Q Consensus 406 ~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~--~~~v~~~ 482 (545)
++++.||.|++||+++++++..+.+|...|.+++|+|++.+|++++ |+.|++||++.. ..+..+..+ ...+.++
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~~~~ 290 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGASSV 290 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCcccceeEE
Confidence 9999999999999999999999999999999999999999999999 999999999876 444444433 3468999
Q ss_pred EEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 483 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 483 ~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|++++|+|++++|++|+.||+|+||+
T Consensus 291 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 291 DFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999999999888877 7789999999999999999999999999999996
No 5
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-44 Score=370.63 Aligned_cols=289 Identities=17% Similarity=0.337 Sum_probs=258.8
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 254 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
...+++.+|.+.|++++|+|++++||+|+.|++|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|++||
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN 136 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC------eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe------ccCCeeEEEEeC-
Q 009059 334 TENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQP- 400 (545)
Q Consensus 334 ~~~~~------~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~------~~~~v~~l~~sp- 400 (545)
+.+.. .....+.+|.+.|.++.|.|++...+++|+.|++|++||+.+++++..+. +...+.++.|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 216 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL 216 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC
Confidence 87532 12456789999999999999877777899999999999999999887763 345689999987
Q ss_pred CCCEEEEEECCCeEEEEECC-CCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC--
Q 009059 401 RLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG-- 476 (545)
Q Consensus 401 ~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~-- 476 (545)
++..+++++.|+.|++||++ ....+..+.+|...|.+++|+|++.+|++++ |+.|++||++++ .++..+..+.
T Consensus 217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~~~~ 293 (380)
T 3iz6_a 217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNREPDR 293 (380)
T ss_dssp SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---EEEEEECCCCSS
T ss_pred CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC---cEEEEecccccc
Confidence 77889999999999999998 4577888999999999999999999999999 999999999987 5566554432
Q ss_pred -----CceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Ee----ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 477 -----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 477 -----~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~----~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
..|.+++|+|++++|++++.|+.|++||+..++.. .+ .+|.+.|++++|+|++.+|++|+.||+|+||+
T Consensus 294 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 294 NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence 24889999999999999999999999999988876 44 57999999999999999999999999999996
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=8.2e-43 Score=345.43 Aligned_cols=283 Identities=18% Similarity=0.311 Sum_probs=253.3
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
..+++.+|.+.|++++|+|++++|++|+.||.|+|||+++++.+..+..|...|.+++|+|++++|++|+.|++|++||+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce-eeEEe-ccCCeeEEEEeC-CCCEEEEEECC
Q 009059 335 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQP-RLGRILAAAIE 411 (545)
Q Consensus 335 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~-~~~~~-~~~~v~~l~~sp-~~~~l~~~~~d 411 (545)
.++.. +..+.+|...|.+++|+|++. ++++|+.|++|++||++++.. ...+. +...|.+++|+| ++..+++++.|
T Consensus 85 ~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 85 NTGEK-VVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp TTCCE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred CCCcE-EEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence 98775 788999999999999999975 556999999999999988744 44454 456699999999 56789999999
Q ss_pred CeEEEEECCCCEEEEEec-CCCCCEEEEEEcC--CCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCC
Q 009059 412 NYISILDVETQVCRLKLQ-GHKNQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 487 (545)
Q Consensus 412 g~I~i~d~~~~~~~~~~~-~h~~~I~~l~~sp--~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~ 487 (545)
+.|++||+++......+. +|...+..+.|+| ++.+|++++ |+.|++||++++ .++..+.+|...|.+++|+|+
T Consensus 163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~h~~~v~~~~~~p~ 239 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHPT 239 (304)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSS
T ss_pred CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---ccceeeCCCCCCEEEEEECCC
Confidence 999999998876555544 5668899999987 678999999 999999999887 788999999999999999999
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCC--EEEEEeCCCcEE
Q 009059 488 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVK 542 (545)
Q Consensus 488 ~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~--~las~s~Dg~I~ 542 (545)
+++|++++.|+.|++||+.+++.. .+..|...+++++|+|+++ +|++|+.||.+.
T Consensus 240 ~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 999999999999999999999888 7778999999999999885 688888887543
No 7
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.9e-42 Score=345.26 Aligned_cols=289 Identities=19% Similarity=0.330 Sum_probs=251.3
Q ss_pred ceeeEEEEeecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCC-----CeEEEEeccCCccEEEEEEcCCCCEEEEE
Q 009059 250 GFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATS 323 (545)
Q Consensus 250 ~~~~~~~~~l~~H~~~V~~l~~spdg-~~latg~~dg~I~lwd~~~-----~~~~~~l~~h~~~V~~l~~sp~~~~l~t~ 323 (545)
...+....++.+|.+.|++++|+|++ ++|++|+.|++|++|++.. +..+..+.+|...|.+++|+|++++|++|
T Consensus 4 ~~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 83 (319)
T 3frx_A 4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83 (319)
T ss_dssp CEEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ceEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEE
Confidence 34566778899999999999999965 8999999999999999863 34567889999999999999999999999
Q ss_pred eCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCC--
Q 009059 324 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR-- 401 (545)
Q Consensus 324 s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~-- 401 (545)
+.|++|++||+.+++. +..+.+|...|.+++|+|++. ++++|+.|+.|++||++.........+...+.++.|.|.
T Consensus 84 s~D~~v~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 84 SWDKTLRLWDVATGET-YQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp ETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC--
T ss_pred eCCCEEEEEECCCCCe-eEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCC
Confidence 9999999999998764 788999999999999999865 566999999999999975444333445667999999985
Q ss_pred ----CCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC
Q 009059 402 ----LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 476 (545)
Q Consensus 402 ----~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~ 476 (545)
+..+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++ |+.|++||+.++ .++..+.. .
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~-~ 237 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---KAMYTLSA-Q 237 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-C
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecC-C
Confidence 34799999999999999999999999999999999999999999999999 999999999887 66666664 5
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Eec--------cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 477 NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS--------AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 477 ~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~--------~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
..|.+++|+|++.+|++++. +.+++|++.....+ .+. .|...+.+++|+|||++|++|+.||.|+|||
T Consensus 238 ~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp SCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 68999999999998777664 56999999887665 222 3567899999999999999999999999996
No 8
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-42 Score=348.48 Aligned_cols=293 Identities=25% Similarity=0.431 Sum_probs=250.1
Q ss_pred eeEEEEeecCCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE---EEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 009059 252 TFTEFQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK---STLEEHTQWITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 252 ~~~~~~~l~~H~~-~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~---~~l~~h~~~V~~l~~sp~~~~l~t~s~dg 327 (545)
.+..+..+.+|.+ .|++++|+|+|++||+|+.|+.|+|||+.++... ....+|...|.+++|+|++++|++|+.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 3456788999998 9999999999999999999999999999887643 23368999999999999999999999999
Q ss_pred eEEEEECCCCCe-eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce---eeEEe-ccCCeeEEEEeCCC
Q 009059 328 TVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK-CQSGATQMRFQPRL 402 (545)
Q Consensus 328 ~I~vwd~~~~~~-~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~---~~~~~-~~~~v~~l~~sp~~ 402 (545)
+|++||+..... .+..+.+|...|.+++|+|++. +|++|+.|+.|++||+.++.. +..+. +...+.+++|+|++
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ 162 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC
Confidence 999999987643 4678899999999999999975 566999999999999987643 33343 44569999999999
Q ss_pred CEEEEEECCCeEEEEECCCCE--EEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC------------cc
Q 009059 403 GRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------------GE 467 (545)
Q Consensus 403 ~~l~~~~~dg~I~i~d~~~~~--~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~------------~~ 467 (545)
.+|++++.|+.|++||.+++. +...+.+|...|.+++|+|++++|++++ |+.|+|||...... ..
T Consensus 163 ~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~ 242 (345)
T 3fm0_A 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK 242 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence 999999999999999998875 4578899999999999999999999999 99999999743221 13
Q ss_pred eEEEEee-CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe--------EE--EeccCCCCeeEEEEeCCC-CEEEEE
Q 009059 468 CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------TL--TLSAHDKLVSSLAASTVN-GMVASA 535 (545)
Q Consensus 468 ~i~~~~~-~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~--------~~--~~~~h~~~V~~l~~spd~-~~las~ 535 (545)
++..+.. |...|.+++|+|++..|++++.|+.|++|+..... .. ...+|...|++++|+|++ .+||+|
T Consensus 243 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~ 322 (345)
T 3fm0_A 243 CICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASC 322 (345)
T ss_dssp EEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEE
T ss_pred eeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEc
Confidence 4445554 77889999999999999999999999999986542 11 235899999999999998 599999
Q ss_pred eCCCcEEEcC
Q 009059 536 SHDKCVKIWK 545 (545)
Q Consensus 536 s~Dg~I~iWd 545 (545)
+.||+|+||+
T Consensus 323 s~Dg~v~~W~ 332 (345)
T 3fm0_A 323 SDDGEVAFWK 332 (345)
T ss_dssp ETTSCEEEEE
T ss_pred CCCCcEEEEE
Confidence 9999999996
No 9
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.3e-42 Score=354.97 Aligned_cols=282 Identities=28% Similarity=0.459 Sum_probs=251.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCc------------------cEEEEEEcCCCCEEEE
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------------------WITDVRFSPSLSRLAT 322 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~------------------~V~~l~~sp~~~~l~t 322 (545)
+|.+.|+|++|+|||++||+|+ ++.++||++.+++.+..+..|.. .|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 78999999999998888765542 4999999999999999
Q ss_pred EeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeC-C
Q 009059 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP-R 401 (545)
Q Consensus 323 ~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp-~ 401 (545)
|+.|+.|+|||+.+++. +..+.+|...|.+++|+|++.. +++++.|+.|++||++++++...+.....+.+++|+| +
T Consensus 141 ~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218 (393)
T ss_dssp EETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred EcCCCeEEEEECCCCcE-EEEEccCCCCEEEEEEcCCCCE-EEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence 99999999999998764 7889999999999999999765 5599999999999999999999998888999999999 8
Q ss_pred CCEEEEEECCCeEEEEECCCCEEEEEe-------cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC--------
Q 009059 402 LGRILAAAIENYISILDVETQVCRLKL-------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-------- 465 (545)
Q Consensus 402 ~~~l~~~~~dg~I~i~d~~~~~~~~~~-------~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~-------- 465 (545)
+.++++++.|+.|++||++++..+..+ .+|...|.+++|+|++++|++++ |+.|++||+++...
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence 889999999999999999999877766 57899999999999999999999 99999999976421
Q ss_pred -cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeC------CCCEEEEEeC
Q 009059 466 -GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST------VNGMVASASH 537 (545)
Q Consensus 466 -~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~sp------d~~~las~s~ 537 (545)
..+...+.+|...|.+++|++++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|++ ++++||+|+.
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~ 378 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 378 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECC
Confidence 2456678889999999999999999999999999999999999887 7789999999999986 6789999999
Q ss_pred CCcEEEcC
Q 009059 538 DKCVKIWK 545 (545)
Q Consensus 538 Dg~I~iWd 545 (545)
||+|+||+
T Consensus 379 Dg~i~iW~ 386 (393)
T 1erj_A 379 DCKARIWK 386 (393)
T ss_dssp TSEEEEEE
T ss_pred CCcEEECc
Confidence 99999996
No 10
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.3e-41 Score=335.66 Aligned_cols=288 Identities=24% Similarity=0.456 Sum_probs=258.5
Q ss_pred eEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 009059 253 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 332 (545)
Q Consensus 253 ~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vw 332 (545)
+.....+.+|.+.|++++|+|++++||+|+.|+.|+||++.+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCCEEEEEECC
Q 009059 333 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 333 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~~~~~d 411 (545)
|+.++.. +..+.+|...|.+++|+|++. ++++|+.|+.|++||+++++++..+.. ...+.+++|+|++..+++++.|
T Consensus 93 d~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 93 DVSSGKC-LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp ETTTCCE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCcE-EEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 9998764 788899999999999999975 566999999999999999998888764 4579999999999999999999
Q ss_pred CeEEEEECCCCEEEEEec-CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceE---EEEEcC
Q 009059 412 NYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH---SCVFHP 486 (545)
Q Consensus 412 g~I~i~d~~~~~~~~~~~-~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~---~~~~sp 486 (545)
+.|++||+++++.+..+. .+...+.+++|+|++++|++++ |+.|++||++++ .++..+..|...+. .....+
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEEEECSSCCSSSCCCEEEECS
T ss_pred CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEEecCCceEEEEEEEEeC
Confidence 999999999998877664 4667899999999999999999 999999999887 67777777765432 233446
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEe--CCCcEEEcC
Q 009059 487 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545 (545)
Q Consensus 487 ~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s--~Dg~I~iWd 545 (545)
++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++++ .|+.|+||+
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred CCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 7889999999999999999999888 7889999999999999999999997 699999995
No 11
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.2e-41 Score=342.95 Aligned_cols=287 Identities=18% Similarity=0.355 Sum_probs=243.1
Q ss_pred eeEEEEeecCCCCCeEEEEE-----cC-CCCEEEEEeCCCcEEEEEcCC-------CeEEEEeccCCccEEEEEEcCCCC
Q 009059 252 TFTEFQLIPASTSKVESCHF-----SP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 252 ~~~~~~~l~~H~~~V~~l~~-----sp-dg~~latg~~dg~I~lwd~~~-------~~~~~~l~~h~~~V~~l~~sp~~~ 318 (545)
.+.....+++|.+.|++++| ++ ++++||+|+.|++|+|||+.. +.....+.+|...|.+++|+|++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 44567789999999999999 77 999999999999999999874 345678899999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE---eccCCeeE
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KCQSGATQ 395 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~---~~~~~v~~ 395 (545)
+|++++.|++|++||+.++.. +..+.+|...|.+++|+|++.. +++++.|+.|++||+......... .+...+.+
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~v~~sp~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTT-YKRFVGHQSEVYSVAFSPDNRQ-ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC 167 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCE-EEEEECCCSCEEEEEECSSTTE-EEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred EEEEEcCCCcEEEEECCCCcE-EEEEcCCCCcEEEEEECCCCCE-EEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence 999999999999999998764 7889999999999999999764 558999999999999844332222 24456999
Q ss_pred EEEeCCC----------CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC
Q 009059 396 MRFQPRL----------GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 464 (545)
Q Consensus 396 l~~sp~~----------~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~ 464 (545)
++|+|++ .++++++.|+.|++|| ........+.+|...|.+++|+|+|++|++++ |+.|++||+....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred eeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999986 6899999999999999 45677778889999999999999999999999 9999999995442
Q ss_pred CcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE---Eec-----------cCCCCeeEEEEeCCCC
Q 009059 465 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TLS-----------AHDKLVSSLAASTVNG 530 (545)
Q Consensus 465 ~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~---~~~-----------~h~~~V~~l~~spd~~ 530 (545)
. ....+ .+...|.+++|+|++.+++ ++.|+.|++||+.+++.. .+. +|...|.+++|+|+++
T Consensus 247 ~--~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 247 Y--PQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp S--CSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred c--cceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence 2 22222 2456799999999998655 567888999999876543 222 6888899999999999
Q ss_pred EEEEEeCCCcEEEcC
Q 009059 531 MVASASHDKCVKIWK 545 (545)
Q Consensus 531 ~las~s~Dg~I~iWd 545 (545)
+|++|+.||.|++|+
T Consensus 323 ~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFS 337 (343)
T ss_dssp CEEEEETTSEEEEEE
T ss_pred eEEEecCCceEEEEE
Confidence 999999999999996
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.9e-42 Score=370.50 Aligned_cols=297 Identities=18% Similarity=0.270 Sum_probs=251.3
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCC
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~-~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~ 318 (545)
..+++|+ .+. ....+.+|.+.|++++|+|++. +|++|+.|++|++||..+++.+..+.+|...|.+++|+|+++
T Consensus 129 ~~v~~wd--~~~---~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~ 203 (611)
T 1nr0_A 129 GHVFLFD--TGT---SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS 203 (611)
T ss_dssp EEEEETT--TCC---BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS
T ss_pred eEEEEee--CCC---CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCC
Confidence 3555665 333 2456889999999999999987 599999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEec-------cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe---
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--- 388 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~-------~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--- 388 (545)
+|++++.|++|++||+.++.. +..+. +|.+.|.+++|+|++. +|++++.|++|++||+.+++++..+.
T Consensus 204 ~las~s~D~~i~lwd~~~g~~-~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~ 281 (611)
T 1nr0_A 204 LFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGT 281 (611)
T ss_dssp EEEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred EEEEEECCCcEEEEECCCCcE-eeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCC
Confidence 999999999999999988764 55553 7999999999999975 55699999999999999887655432
Q ss_pred -----------------------------------------ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEE
Q 009059 389 -----------------------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 427 (545)
Q Consensus 389 -----------------------------------------~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~ 427 (545)
+...|.+++|+|++.+|++++.|+.|++||+.++.....
T Consensus 282 ~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 282 RIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 361 (611)
T ss_dssp SGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred CccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence 335689999999999999999999999999987644322
Q ss_pred e-c-----------------------------------------------------------------------------
Q 009059 428 L-Q----------------------------------------------------------------------------- 429 (545)
Q Consensus 428 ~-~----------------------------------------------------------------------------- 429 (545)
+ .
T Consensus 362 ~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~ 441 (611)
T 1nr0_A 362 FPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 441 (611)
T ss_dssp SSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE
T ss_pred cccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCc
Confidence 1 0
Q ss_pred ----CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 430 ----GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 430 ----~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
.|...+.+++|+|+|++|++++ |+.|++||+..+.. ..+.. ..|...|.+++|+|++++|++++.|+.|++||
T Consensus 442 ~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~-~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~ 519 (611)
T 1nr0_A 442 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV-SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYS 519 (611)
T ss_dssp EEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE-EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce-eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEE
Confidence 1234578899999999999999 99999999976521 22334 67899999999999999999999999999999
Q ss_pred CCC-CeEEE---eccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 505 MTE-NKTLT---LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 505 ~~~-~~~~~---~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+.+ ++... +..|...|++++|+||+++||+|+.|++|+|||
T Consensus 520 ~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 520 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp GGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence 987 55442 234999999999999999999999999999996
No 13
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.1e-42 Score=370.77 Aligned_cols=302 Identities=20% Similarity=0.303 Sum_probs=255.8
Q ss_pred CcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec-------cCCccE
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------EHTQWI 308 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~-------~h~~~V 308 (545)
.+.|..+++|+...+ +.+..+.+|.+.|++++|+|||++||+|+.|++|+|||+.+++.+..+. +|.+.|
T Consensus 166 ~s~D~~v~lwd~~~~---~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V 242 (611)
T 1nr0_A 166 GSDDNTVAIFEGPPF---KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV 242 (611)
T ss_dssp EETTSCEEEEETTTB---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred EeCCCeEEEEECCCC---eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCE
Confidence 345788999997665 3467789999999999999999999999999999999999999888884 799999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCCee------------------------------------------eeEecc
Q 009059 309 TDVRFSPSLSRLATSSADRTVRVWDTENPDYS------------------------------------------LRTFTG 346 (545)
Q Consensus 309 ~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~------------------------------------------~~~~~~ 346 (545)
.+++|+|++++|++++.|++|++||+.+++.. ...+.+
T Consensus 243 ~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g 322 (611)
T 1nr0_A 243 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG 322 (611)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC
Confidence 99999999999999999999999999865421 234467
Q ss_pred CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE---------------------------------------
Q 009059 347 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--------------------------------------- 387 (545)
Q Consensus 347 h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~--------------------------------------- 387 (545)
|...|++++|+|++. +|++++.|+.|++||+.++++...+
T Consensus 323 h~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~ 401 (611)
T 1nr0_A 323 HNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVD 401 (611)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSC
T ss_pred CCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccc
Confidence 999999999999976 5559999999999999876543211
Q ss_pred --------------------------------------------eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCE
Q 009059 388 --------------------------------------------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 423 (545)
Q Consensus 388 --------------------------------------------~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~ 423 (545)
.+...+.+++|+|++.++++++.|+.|++||+.++.
T Consensus 402 ~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~ 481 (611)
T 1nr0_A 402 SSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS 481 (611)
T ss_dssp TTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE
T ss_pred ccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc
Confidence 111336789999999999999999999999998765
Q ss_pred E--EEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEE--EeeCCCceEEEEEcCCCCEEEEEEcCC
Q 009059 424 C--RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE--LSCTGNKFHSCVFHPTFPSLLVIGCYE 498 (545)
Q Consensus 424 ~--~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~--~~~~~~~v~~~~~sp~~~~l~~~~~dg 498 (545)
. ... .+|...|++++|+|+|++|++++ |+.|++||+.+.. .++.. +..|...|.+++|+|++++|++++.|+
T Consensus 482 ~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~ 558 (611)
T 1nr0_A 482 VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 558 (611)
T ss_dssp EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC--ceeeeeeeeecccceeEEEECCCCCEEEEEECCC
Confidence 3 233 67999999999999999999999 9999999998621 22222 334889999999999999999999999
Q ss_pred eEEEEeCCCCe--E-EEeccC-CCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 499 TLELWNMTENK--T-LTLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 499 ~I~iwd~~~~~--~-~~~~~h-~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+|++||+.++. . ..+.+| ...|.+++|+|++. |++++.|++|++||
T Consensus 559 ~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 559 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp CEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred cEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence 99999998764 2 356689 89999999999998 99999999999996
No 14
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.6e-42 Score=344.43 Aligned_cols=279 Identities=15% Similarity=0.208 Sum_probs=234.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-----------CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeE
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 329 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~-----------~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I 329 (545)
.|...|.+++|+|||++|++++ |+++++||... .........|...|.+++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 4667799999999999999887 77888887321 01111222356789999999984 78899999999
Q ss_pred EEEECCCCCeee---eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCC-E
Q 009059 330 RVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG-R 404 (545)
Q Consensus 330 ~vwd~~~~~~~~---~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~-~ 404 (545)
+|||+.+++... ..+.+|.+.|++++|+|++. +|++|+.|+.|++||+.+++++..+. +...|.+++|++++. .
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 999998876422 23458999999999999975 55699999999999999999998887 456799999999875 5
Q ss_pred EEEEECCCeEEEEECCCCEEEEEec--CCCCCEEEEEEcCC-CCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceE
Q 009059 405 ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 480 (545)
Q Consensus 405 l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~sp~-g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~ 480 (545)
+++++.|+.|++||+++++....+. .|...+.+++|+|+ +++|++|+ |+.|++||++++ .++..+..|...|+
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---~~~~~~~~h~~~v~ 261 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST---SCVLSSAVHSQCVT 261 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----CCEEEECCSSCEE
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC---cEEEEEcCCCCCEE
Confidence 7788999999999999998877764 35668999999985 57888888 999999999887 67788999999999
Q ss_pred EEEEcCCC-CEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCC-EEEEEeCCCcEEEcC
Q 009059 481 SCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 545 (545)
Q Consensus 481 ~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~-~las~s~Dg~I~iWd 545 (545)
+++|+|++ ++|++++.|++|+|||+.+++++.+.+|.+.|++++|+|+++ +|++++.||+|++|+
T Consensus 262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 262 GLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 99999998 578999999999999999999999999999999999999986 678999999999995
No 15
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-41 Score=335.95 Aligned_cols=289 Identities=21% Similarity=0.331 Sum_probs=236.4
Q ss_pred eEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--eEEEEe-cc-CCccEEEEEEcCCCCEEEEEeCCCe
Q 009059 253 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTL-EE-HTQWITDVRFSPSLSRLATSSADRT 328 (545)
Q Consensus 253 ~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~--~~~~~l-~~-h~~~V~~l~~sp~~~~l~t~s~dg~ 328 (545)
+..+..+.+|.+.|++++|+++ +||+|+.|+.|+|||+..+ +....+ .+ |...|.+++|+|++++|++|+.|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 3457788999999999999987 9999999999999999874 455556 44 9999999999999999999999999
Q ss_pred EEEEECCCC------CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC----ceeeEEe-ccCCeeEEE
Q 009059 329 VRVWDTENP------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGATQMR 397 (545)
Q Consensus 329 I~vwd~~~~------~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~----~~~~~~~-~~~~v~~l~ 397 (545)
|+|||+... ...+..+.+|...|.+++|+|++. +|++|+.|+.|++||++.. +++..+. +...|.+++
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 999998532 124567889999999999999975 5669999999999999532 4455554 456799999
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCC--EEEEEecCCCCCEEEEEEcCC--CCEEEEEe-CCcEEEEEcCCCCCc-----c
Q 009059 398 FQPRLGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKG-----E 467 (545)
Q Consensus 398 ~sp~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~~I~~l~~sp~--g~~l~s~s-dg~I~vwd~~~~~~~-----~ 467 (545)
|+|++..|++++.|+.|++||..++ +++..+.+|...|.+++|+|+ +.+|++++ |++|++||+..+... .
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 9999999999999999999999876 678889999999999999998 77899988 999999998754211 2
Q ss_pred eEEEEee-CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeE--E-E-eccCCC-CeeEEEEeC--CCCEEEEEeCCC
Q 009059 468 CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT--L-T-LSAHDK-LVSSLAAST--VNGMVASASHDK 539 (545)
Q Consensus 468 ~i~~~~~-~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~--~-~-~~~h~~-~V~~l~~sp--d~~~las~s~Dg 539 (545)
+...+.. |...|.+++|++++ +|++++.|+.|++||..+++. . . ..+|.. .|.+++|+| ++++||+|+.||
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 3344444 78899999999765 799999999999999988742 3 2 357877 899999999 688999999999
Q ss_pred cEEEcC
Q 009059 540 CVKIWK 545 (545)
Q Consensus 540 ~I~iWd 545 (545)
+|+|||
T Consensus 320 ~v~~W~ 325 (330)
T 2hes_X 320 IVNFWS 325 (330)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999996
No 16
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.5e-42 Score=346.14 Aligned_cols=282 Identities=13% Similarity=0.161 Sum_probs=236.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCeEE----EEeccCCccEEEEEEcCCCCEEEEEeCCCe
Q 009059 259 IPASTSKVESCHFSPDGKLLATGGH------DKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRT 328 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg~~latg~~------dg~I~lwd~~~~~~~----~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~ 328 (545)
..+|.+.|++++|+|||++||+|+. |+.|++|+..++... ....+|...|.+++|+|++. +++++.||+
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 4579999999999999999999997 778999998776543 33456889999999999875 556788999
Q ss_pred EEEEECCCCCeee---eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCC-
Q 009059 329 VRVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG- 403 (545)
Q Consensus 329 I~vwd~~~~~~~~---~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~- 403 (545)
|+|||+.+++... ....+|...|++++|+|++. +|++|+.|+.|++||+++++++..+.. ...+.+++|++++.
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 9999998765321 24457999999999999975 455999999999999999999988874 56799999999875
Q ss_pred EEEEEECCCeEEEEECCCCEEEEEe--cCCCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCce
Q 009059 404 RILAAAIENYISILDVETQVCRLKL--QGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF 479 (545)
Q Consensus 404 ~l~~~~~dg~I~i~d~~~~~~~~~~--~~h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v 479 (545)
.+++++.|+.|++||+++++....+ ..|...+.+++|+|++ .+|++++ |+.|++||++++ .++..+..|...|
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---~~~~~~~~~~~~v 272 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---DSAQTSAVHSQNI 272 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---GGCEEECCCSSCE
T ss_pred eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC---cEeEEEeccceeE
Confidence 6888999999999999998766544 3467789999999974 6888888 899999999887 6777888999999
Q ss_pred EEEEEcCCC-CEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeC-CCCEEEEEeCCCcEEEcC
Q 009059 480 HSCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 545 (545)
Q Consensus 480 ~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp-d~~~las~s~Dg~I~iWd 545 (545)
.+++|+|++ ++|++++.|+.|+|||+++++++...+|.+.|++|+|+| ++.+|++++.||+|++||
T Consensus 273 ~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 273 TGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 999999987 578899999999999999999998889999999999998 789999999999999996
No 17
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.4e-40 Score=353.04 Aligned_cols=294 Identities=27% Similarity=0.455 Sum_probs=260.6
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.+..+++|+.... .+..+.+|...|.+++|+|++++|++++.|+.|++||... +.+..+.+|...|.+++|+|++
T Consensus 282 ~d~~i~~w~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g 356 (577)
T 2ymu_A 282 DDKTVKLWNRNGQ----LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDG 356 (577)
T ss_dssp TTSCEEEEETTSC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTS
T ss_pred CCCEEEEEeCCCc----EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCC
Confidence 4667889986432 4567889999999999999999999999999999999765 5566788999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEE
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQM 396 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l 396 (545)
++|++++.|+.|++||.. +. .+..+.+|...|.+++|+|++..+ ++++.|+.|++||.. ++.+..+. +...+.++
T Consensus 357 ~~l~~~~~dg~v~~~~~~-~~-~~~~~~~~~~~v~~~~~s~dg~~l-~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~ 432 (577)
T 2ymu_A 357 QTIASASDDKTVKLWNRN-GQ-LLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGV 432 (577)
T ss_dssp SEEEEEETTSEEEEEETT-CC-EEEEEECCSSCEEEEEECTTSSCE-EEEETTSEEEEECTT-CCEEEEEECCSSCEEEE
T ss_pred CEEEEEeCCCEEEEEcCC-CC-EEEEecCCCCCeEEEEECCCCCEE-EEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEE
Confidence 999999999999999965 33 478888999999999999998655 588899999999965 55555554 55679999
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC
Q 009059 397 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 475 (545)
Q Consensus 397 ~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~ 475 (545)
+|+|++.++++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++ |+.|++||.. + .++..+..|
T Consensus 433 ~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~---~~~~~~~~h 507 (577)
T 2ymu_A 433 AFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G---QLLQTLTGH 507 (577)
T ss_dssp EECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-S---CEEEEEECC
T ss_pred EECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-C---CEEEEEeCC
Confidence 99999999999999999999996 5667788899999999999999999999999 8999999953 3 678889999
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 476 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 476 ~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
...|++++|+|++++|++++.|+.|++||........+.+|...|++++|+||+++|+|++.|++|++||
T Consensus 508 ~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 508 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999999999999999999999976544448889999999999999999999999999999998
No 18
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-40 Score=329.94 Aligned_cols=284 Identities=18% Similarity=0.253 Sum_probs=254.9
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
....+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 34668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC-----CcEEEEECCCCceee-----------EEe-ccC--CeeE
Q 009059 335 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAG-----------VFK-CQS--GATQ 395 (545)
Q Consensus 335 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d-----g~I~lwd~~~~~~~~-----------~~~-~~~--~v~~ 395 (545)
.+++. +..+. +...|.+++|+|++..++ +++.+ +.|++||+....... .+. +.. .+.+
T Consensus 104 ~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~-~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 104 SNGQC-VATWK-SPVPVKRVEFSPCGNYFL-AILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp TTCCE-EEEEE-CSSCEEEEEECTTSSEEE-EEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred CCCcE-EEEee-cCCCeEEEEEccCCCEEE-EecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 98775 56665 888999999999976555 66667 999999998654322 222 222 7999
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCC-CEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe
Q 009059 396 MRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 473 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg~I~i~d~~~-~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~ 473 (545)
++|+|++..+++++.||.|++||+++ ...+..+..|...|.+++|+|++.+|++++ |+.|++||+.++ ..+..+.
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~ 257 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL---QVLKKYE 257 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEE
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC---ceeeeec
Confidence 99999999999999999999999999 788899999999999999999999999998 999999999887 5555555
Q ss_pred eCCCceEEEEEcCCCCEEEEEEcCC--------------eEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 474 CTGNKFHSCVFHPTFPSLLVIGCYE--------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 474 ~~~~~v~~~~~sp~~~~l~~~~~dg--------------~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
+...+..++|+|++.++++++.++ .+++||+.+++.+ .+.+|...|++++|+|++++|++++.|
T Consensus 258 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 258 -TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp -CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred -CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence 778899999999999999999988 8999999999888 778899999999999999999999999
Q ss_pred CcEEEcC
Q 009059 539 KCVKIWK 545 (545)
Q Consensus 539 g~I~iWd 545 (545)
|.|+||+
T Consensus 337 g~v~iw~ 343 (369)
T 3zwl_B 337 GFIRLHH 343 (369)
T ss_dssp SEEEEEE
T ss_pred CeEEEEE
Confidence 9999996
No 19
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3e-39 Score=323.23 Aligned_cols=288 Identities=19% Similarity=0.332 Sum_probs=247.1
Q ss_pred eeeEEEEeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCC-----eEEEEeccCCccEEEEEEcCCCCEEEEEe
Q 009059 251 FTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSPSLSRLATSS 324 (545)
Q Consensus 251 ~~~~~~~~l~~H~~~V~~l~~spd-g~~latg~~dg~I~lwd~~~~-----~~~~~l~~h~~~V~~l~~sp~~~~l~t~s 324 (545)
+.+....+|+||.+.|++|+|+|+ +++||||+.|++|+|||+.+. .+...+.+|...|.+++|+|++++|++++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 344556789999999999999997 689999999999999998754 35677899999999999999999999999
Q ss_pred CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE--eccCCeeEEEEeCCC
Q 009059 325 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--KCQSGATQMRFQPRL 402 (545)
Q Consensus 325 ~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~--~~~~~v~~l~~sp~~ 402 (545)
.|+.|++|+...... ......+...+..+.+.+++.. +++++.|+.+++||+......... .+...+..++|++++
T Consensus 106 ~d~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 106 WDGTLRLWDLTTGTT-TRRFVGHTKDVLSVAFSSDNRQ-IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp TTSEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred ccccceEEeecccce-eeeecCCCCceeEEEEeecCcc-ceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence 999999999997664 6666778888999999998765 458999999999999866544322 234568899998764
Q ss_pred --CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCce
Q 009059 403 --GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF 479 (545)
Q Consensus 403 --~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v 479 (545)
..+++++.|+.|++||+++++.+..+.+|...|++++|+|++++|++++ |+.|++||+++. .++..+.. ...+
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~---~~~~~~~~-~~~v 259 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG---KHLYTLDG-GDII 259 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-SSCE
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC---ceeeeecC-CceE
Confidence 4577888999999999999999999999999999999999999999999 999999999876 66666654 5689
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-E---------eccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 480 HSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T---------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 480 ~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~---------~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.++.|+|++. +++++.|+.|++||++++..+ . ..+|...|++++|+|++++||+|+.||.|+|||
T Consensus 260 ~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 260 NALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 9999999876 667778999999999987665 2 236889999999999999999999999999996
No 20
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.3e-39 Score=333.50 Aligned_cols=287 Identities=14% Similarity=0.152 Sum_probs=255.7
Q ss_pred eEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe------EEEEeccCCccEEEEEEcCC----C---CE
Q 009059 253 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPS----L---SR 319 (545)
Q Consensus 253 ~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~------~~~~l~~h~~~V~~l~~sp~----~---~~ 319 (545)
......+.+|.+.|++|+|+| ++|++|+.||.|+|||+.+++ .+..+.+|...|.+++|+|+ + ++
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 345678899999999999998 799999999999999999887 78888899999999999999 9 99
Q ss_pred EEEEeCCCeEEEEECCCCCe----eeeEeccC-----cccEEEEEEe----CCCCcEEEEEcCCCcEEEEECCC------
Q 009059 320 LATSSADRTVRVWDTENPDY----SLRTFTGH-----STTVMSLDFH----PSKEDLLCSCDNNSEIRYWSINN------ 380 (545)
Q Consensus 320 l~t~s~dg~I~vwd~~~~~~----~~~~~~~h-----~~~V~~l~~~----p~~~~ll~s~s~dg~I~lwd~~~------ 380 (545)
|++++.||.|++||+.++.. .+..+..| ...|.+++|+ |++..++++++.||.|++||+.+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 99999999999999987652 15677778 5899999999 98766366899999999999998
Q ss_pred Cceee-----EEe--------ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC---C---CCCEEEEEEc
Q 009059 381 GSCAG-----VFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---H---KNQVHSVCWN 441 (545)
Q Consensus 381 ~~~~~-----~~~--------~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~---h---~~~I~~l~~s 441 (545)
++.+. .+. +...+.+++|+|++ .+++++.|+.|++||+++++.+..+.. | ...|.+++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 66665 554 35679999999998 999999999999999999999999998 8 9999999999
Q ss_pred CCCCEEEEEe-C---CcEEEEEcCCCCCcceEEEEee-------------CCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 442 TSGEYLASVS-D---ELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 442 p~g~~l~s~s-d---g~I~vwd~~~~~~~~~i~~~~~-------------~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
|++.+|++++ | +.|++||++++ ..+..+.. |...|.+++|+|++++|++++.|+.|++||
T Consensus 243 ~~~~~l~~~~~d~~~g~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 243 PQGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEecCCCCceEEEEECCCC---cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9999999999 8 89999999887 67778887 899999999999999999999999999999
Q ss_pred CCCCeEE-Eec------cC---------------CCCeeEEEEeCCC----------CEEEEEeCCCcEEEcC
Q 009059 505 MTENKTL-TLS------AH---------------DKLVSSLAASTVN----------GMVASASHDKCVKIWK 545 (545)
Q Consensus 505 ~~~~~~~-~~~------~h---------------~~~V~~l~~spd~----------~~las~s~Dg~I~iWd 545 (545)
+.+++.+ .+. .| ...|++++|+|++ ++|++++.||.|+|||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 9999888 666 67 9999999999998 7999999999999996
No 21
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-41 Score=346.49 Aligned_cols=305 Identities=16% Similarity=0.204 Sum_probs=265.5
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC----CeEEEEeccCCccEEEEE
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVR 312 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~----~~~~~~l~~h~~~V~~l~ 312 (545)
..|..+++|+..++.....+..+ .|...|++++|+|++++|++|+.|+.|+|||+.+ .+.+..+.+|...|.+++
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~ 120 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVK 120 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEE
T ss_pred CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEE
Confidence 45778999999887543333333 5899999999999999999999999999999987 458888999999999999
Q ss_pred EcCC-CCEEEEEeCCCeEEEEECCCCC------ee--eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce
Q 009059 313 FSPS-LSRLATSSADRTVRVWDTENPD------YS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 313 ~sp~-~~~l~t~s~dg~I~vwd~~~~~------~~--~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~ 383 (545)
|+|+ +.+|++++.||.|++||+.+.. .. +..+..|...|.+++|+|++..++++++.||.|++||+++++.
T Consensus 121 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 200 (416)
T 2pm9_A 121 FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE 200 (416)
T ss_dssp ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred EcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence 9998 8999999999999999998765 21 2234679999999999999777888999999999999999999
Q ss_pred eeEEec-------cCCeeEEEEeCCC-CEEEEEECCC---eEEEEECCCC-EEEEEec-CCCCCEEEEEEcC-CCCEEEE
Q 009059 384 AGVFKC-------QSGATQMRFQPRL-GRILAAAIEN---YISILDVETQ-VCRLKLQ-GHKNQVHSVCWNT-SGEYLAS 449 (545)
Q Consensus 384 ~~~~~~-------~~~v~~l~~sp~~-~~l~~~~~dg---~I~i~d~~~~-~~~~~~~-~h~~~I~~l~~sp-~g~~l~s 449 (545)
+..+.. ...+.+++|+|++ ..+++++.++ .|++||++++ ..+..+. +|...|.+++|+| ++.+|++
T Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s 280 (416)
T 2pm9_A 201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS 280 (416)
T ss_dssp EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEE
T ss_pred ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEE
Confidence 888875 4679999999997 5788888888 9999999986 6667777 8999999999999 8999999
Q ss_pred Ee-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC-CEEEEEEcCCeEEEEeCCCCeEE-Eec------------
Q 009059 450 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL-TLS------------ 514 (545)
Q Consensus 450 ~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~~-~~~------------ 514 (545)
++ |+.|++||+.++ .++..+..|...|.+++|+|++ .+|++++.|+.|++||+.+.... ...
T Consensus 281 ~~~dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 357 (416)
T 2pm9_A 281 SGRDNTVLLWNPESA---EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETD 357 (416)
T ss_dssp EESSSEEEEECSSSC---CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------
T ss_pred EeCCCCEEEeeCCCC---ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccc
Confidence 99 999999999887 7788888999999999999999 89999999999999999876532 110
Q ss_pred -----------------------cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 515 -----------------------AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 515 -----------------------~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.|...+.+++|+|+|++|++++.||.|+|||
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 358 FWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN 411 (416)
T ss_dssp ---------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred ccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence 1667888999999999999999999999997
No 22
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.5e-39 Score=320.04 Aligned_cols=264 Identities=18% Similarity=0.256 Sum_probs=242.3
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
+.|..+++|++..+. ......+.+|...|.+++|++++.++++++.|+.|+|||+.+++.+..+..|...+.+++|+|+
T Consensus 55 s~D~~v~vW~~~~~~-~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spd 133 (321)
T 3ow8_A 55 SLDDLVKVWKWRDER-LDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD 133 (321)
T ss_dssp ETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTT
T ss_pred cCCCCEEEEECCCCC-eeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCC
Confidence 346778889887653 3345678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeE
Q 009059 317 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQ 395 (545)
Q Consensus 317 ~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~ 395 (545)
+++|++++.||.|++|+++++.. ...+..|...|.+++|+|++. +|++|+.||.|++||+++++++..+.. ...+.+
T Consensus 134 g~~l~~g~~dg~v~i~~~~~~~~-~~~~~~~~~~v~~~~~spdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 211 (321)
T 3ow8_A 134 SQYLATGTHVGKVNIFGVESGKK-EYSLDTRGKFILSIAYSPDGK-YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRS 211 (321)
T ss_dssp SSEEEEECTTSEEEEEETTTCSE-EEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCE
T ss_pred CCEEEEEcCCCcEEEEEcCCCce-eEEecCCCceEEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeE
Confidence 99999999999999999998775 677788999999999999975 555899999999999999999888874 457999
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEee
Q 009059 396 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 474 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~ 474 (545)
++|+|++.+|++++.|+.|++||++++.....+.+|...|.+++|+|++.+|++++ |+.|++||+.++ .++..+..
T Consensus 212 l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~---~~~~~~~~ 288 (321)
T 3ow8_A 212 LTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR---TCVHTFFD 288 (321)
T ss_dssp EEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECC
T ss_pred EEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---EEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999 999999999887 88899999
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 475 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 475 ~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
|...|.+++|+|++.+|++++.|+.|++||..
T Consensus 289 h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 289 HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999999999963
No 23
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.1e-38 Score=341.29 Aligned_cols=295 Identities=26% Similarity=0.450 Sum_probs=262.6
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
..+..+++|+... +.+..+.+|...|.+++|+|++++|++++.|+.|++|+. +++.+..+.+|...|.+++|+|+
T Consensus 240 ~~d~~i~~w~~~~----~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~ 314 (577)
T 2ymu_A 240 SDDKTVKLWNRNG----QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD 314 (577)
T ss_dssp ETTSCEEEECTTS----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTT
T ss_pred eCCCEEEEEeCCC----CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCC
Confidence 3567889998543 346778999999999999999999999999999999996 46778889999999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeE
Q 009059 317 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQ 395 (545)
Q Consensus 317 ~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~ 395 (545)
+++|++++.|+.|++||+... .+..+.+|...|.+++|+|++. ++++++.|+.|++||.. ++.+..+. +...+.+
T Consensus 315 ~~~l~t~~~d~~i~~w~~~~~--~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~v~~~~~~-~~~~~~~~~~~~~v~~ 390 (577)
T 2ymu_A 315 GQTIASASDDKTVKLWNRNGQ--HLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRG 390 (577)
T ss_dssp SSEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETT-CCEEEEEECCSSCEEE
T ss_pred CCEEEEEeCCCeEEEEeCCCC--eeEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEcCC-CCEEEEecCCCCCeEE
Confidence 999999999999999998753 3677889999999999999976 55588999999999964 55665555 4567999
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEee
Q 009059 396 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 474 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~ 474 (545)
++|+|++.+|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++ |+.|++||... ..+..+..
T Consensus 391 ~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~----~~~~~~~~ 465 (577)
T 2ymu_A 391 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG----QLLQTLTG 465 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS----CEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC----CEEEEEcC
Confidence 999999999999999999999995 5677888899999999999999999999999 99999999642 57778889
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 475 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 475 ~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|...|.+++|+|++++|++++.|+.|++||........+.+|...|++++|+|++++||+++.||.|+|||
T Consensus 466 ~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 466 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 99999999999999999999999999999976554558889999999999999999999999999999997
No 24
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2e-38 Score=316.34 Aligned_cols=280 Identities=18% Similarity=0.254 Sum_probs=250.4
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE---EEec--cCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 259 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK---STLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~---~~l~--~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
..+|.+.|++++|+|++++|++++ ||.|++||+.+++.. ..+. .|...|.+++|+|++++|++++.||.|++||
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 347999999999999999999998 999999999876533 2332 7999999999999999999999999999999
Q ss_pred CCCCCe-eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECC
Q 009059 334 TENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 334 ~~~~~~-~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
+.++.. ....+..|...|.+++|+|++. ++++++.||.|++||+++++.+..+. +...+.+++|+|++..+++++.|
T Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 126 LAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCCcceeeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence 987653 3567788999999999999875 55588889999999999999888876 45679999999999999999999
Q ss_pred CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE
Q 009059 412 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 412 g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~ 490 (545)
+.|++||+++++.+..+. +...+.+++|+|++++|++++ ++.|++||+.+.. ...+..|...|.+++|+|++++
T Consensus 205 g~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----EEEECCCSSCEEEEEECTTSSE
T ss_pred CcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC----eEEEcCCccceeEEEECCCCCE
Confidence 999999999999888775 788999999999999999999 8999999998763 3466778999999999999999
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 491 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 491 l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|++++.++.|++||+.+++.+....|...|.+++|+|++++|++++.||.|++||
T Consensus 280 l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 280 FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 9999999999999999999887778999999999999999999999999999996
No 25
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.4e-39 Score=334.44 Aligned_cols=261 Identities=24% Similarity=0.466 Sum_probs=239.3
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.|..+++|+..++.. ...+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++
T Consensus 128 ~Dg~i~vwd~~~~~~---~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~ 204 (410)
T 1vyh_C 128 EDATIKVWDYETGDF---ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 204 (410)
T ss_dssp SSSCEEEEETTTCCC---CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS
T ss_pred CCCeEEEEECCCCcE---EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCC
Confidence 467889999888753 56788999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEE
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQM 396 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l 396 (545)
.+|++|+.|++|++||+.++.. +..+.+|...|.++.|+|++. ++++|+.|+.|++||+.++++...+. +...+.++
T Consensus 205 ~~l~s~s~D~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~ 282 (410)
T 1vyh_C 205 DHIVSASRDKTIKMWEVQTGYC-VKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECI 282 (410)
T ss_dssp SEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcE-EEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEE
Confidence 9999999999999999998764 888999999999999999975 66699999999999999999888775 44569999
Q ss_pred EEeCC--------------------CCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcE
Q 009059 397 RFQPR--------------------LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELV 455 (545)
Q Consensus 397 ~~sp~--------------------~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I 455 (545)
+|+|+ +.++++++.|+.|++||++++.++..+.+|...|.+++|+|++++|++++ |+.|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i 362 (410)
T 1vyh_C 283 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362 (410)
T ss_dssp EECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEE
T ss_pred EEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 99996 56899999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 456 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 456 ~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
++||+.++ .++..+..|...|.+++|+|++.+|++++.|+.|++|+++
T Consensus 363 ~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 363 RVWDYKNK---RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEECCTTS---CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEECCCC---ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999876 6778888999999999999999999999999999999863
No 26
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.4e-38 Score=350.94 Aligned_cols=285 Identities=21% Similarity=0.353 Sum_probs=244.0
Q ss_pred EEEEeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCC-----CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 009059 254 TEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spd-g~~latg~~dg~I~lwd~~~-----~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg 327 (545)
.....+++|.+.|++|+|+|+ +++|++|+.|++|+||++.+ +.....+.+|...|.+++|+|++++|++|+.||
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 445678999999999999986 47999999999999999875 345678899999999999999999999999999
Q ss_pred eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE----eccCCeeEEEEeCCC-
Q 009059 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KCQSGATQMRFQPRL- 402 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~----~~~~~v~~l~~sp~~- 402 (545)
+|+|||+.++.. ...+.+|...|.+++|+|++..+ ++|+.|++|++||+......... .+...+.+++|+|++
T Consensus 453 ~v~vwd~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l-~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 530 (694)
T 3dm0_A 453 ELRLWDLAAGVS-TRRFVGHTKDVLSVAFSLDNRQI-VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530 (694)
T ss_dssp EEEEEETTTTEE-EEEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred cEEEEECCCCcc-eeEEeCCCCCEEEEEEeCCCCEE-EEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence 999999998764 78889999999999999997655 49999999999998754433322 234559999999986
Q ss_pred -CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceE
Q 009059 403 -GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 480 (545)
Q Consensus 403 -~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~ 480 (545)
..+++++.|+.|++||+++++....+.+|...|++++|+|++++|++++ |+.|++||+.++ .++..+. +...|.
T Consensus 531 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---~~~~~~~-~~~~v~ 606 (694)
T 3dm0_A 531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---KKLYSLE-ANSVIH 606 (694)
T ss_dssp SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---EEEECCB-CSSCEE
T ss_pred cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---ceEEEec-CCCcEE
Confidence 5799999999999999999999999999999999999999999999999 999999999887 5565554 356799
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccC-------------------CCCeeEEEEeCCCCEEEEEeCCCc
Q 009059 481 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-------------------DKLVSSLAASTVNGMVASASHDKC 540 (545)
Q Consensus 481 ~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h-------------------~~~V~~l~~spd~~~las~s~Dg~ 540 (545)
+++|+|++.+|++ +.++.|++||+.+++.+ .+..+ ...+++++|+|++++|++|+.||.
T Consensus 607 ~~~~sp~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 607 ALCFSPNRYWLCA-ATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEEECSSSSEEEE-EETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEcCCCcEEEE-EcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 9999999986655 45677999999998876 33221 123789999999999999999999
Q ss_pred EEEcC
Q 009059 541 VKIWK 545 (545)
Q Consensus 541 I~iWd 545 (545)
|+||+
T Consensus 686 i~iW~ 690 (694)
T 3dm0_A 686 IRVWG 690 (694)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 27
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-39 Score=328.96 Aligned_cols=299 Identities=14% Similarity=0.203 Sum_probs=258.5
Q ss_pred cceeeeeec----CCcee---eEEEEeecC----------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe
Q 009059 239 DRVGRSAEV----GKGFT---FTEFQLIPA----------STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL 301 (545)
Q Consensus 239 d~~~~~~~~----~~~~~---~~~~~~l~~----------H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l 301 (545)
|..+++|+. .++.. +.....+.. |.+.|++++|+|++++|++|+.||.|++|| .+++.+..+
T Consensus 67 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~ 145 (425)
T 1r5m_A 67 NSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVL 145 (425)
T ss_dssp BTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEE
T ss_pred CceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeec
Confidence 567788887 66651 112222333 788999999999999999999999999999 677888999
Q ss_pred ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCccc---------------EEEEEEeCCCCcEEEE
Q 009059 302 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT---------------VMSLDFHPSKEDLLCS 366 (545)
Q Consensus 302 ~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~---------------V~~l~~~p~~~~ll~s 366 (545)
..|...|.+++|+|++++|++++.|+.|++||+.++.. +..+..+... +.+++|++++ .+++
T Consensus 146 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 222 (425)
T 1r5m_A 146 NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV-MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVI 222 (425)
T ss_dssp CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE-EEEECCC---------------CCCBSCCEEEETT--EEEE
T ss_pred cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE-EEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEE
Confidence 99999999999999999999999999999999998764 6777777766 9999999874 4568
Q ss_pred EcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCC
Q 009059 367 CDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 445 (545)
Q Consensus 367 ~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~ 445 (545)
++.+|.|++||+.+++.+..+. +...+.+++|+|++..+++++.|+.|++||+++++.+..+..|...|.+++|+|++
T Consensus 223 ~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~- 301 (425)
T 1r5m_A 223 PGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD- 301 (425)
T ss_dssp ECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-
T ss_pred EcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-
Confidence 8889999999999988887775 45679999999999999999999999999999999888999999999999999999
Q ss_pred EEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe---------------
Q 009059 446 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------------- 509 (545)
Q Consensus 446 ~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~--------------- 509 (545)
+|++++ |+.|++||+.++ ..+..+..|...+.+++|+|++++|++++.++.|++||+.+++
T Consensus 302 ~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 378 (425)
T 1r5m_A 302 KVISCSMDGSVRLWSLKQN---TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILN 378 (425)
T ss_dssp EEEEEETTSEEEEEETTTT---EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------
T ss_pred EEEEEeCCCcEEEEECCCC---cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccC
Confidence 888887 999999999877 7788888899999999999999999999999999999998877
Q ss_pred -----EE-EeccCCC--CeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 510 -----TL-TLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 510 -----~~-~~~~h~~--~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+ .+..|.. .|++++|+|++++|++++.||.|+|||
T Consensus 379 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 379 PLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred cccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence 55 7778866 999999999999999999999999996
No 28
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5e-39 Score=325.80 Aligned_cols=283 Identities=15% Similarity=0.190 Sum_probs=247.4
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe--EEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 258 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 258 ~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~--~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
.+..|.++|++++|+|++++||+|+.|+.|+|||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 355699999999999999999999999999999999987 888899999999999999999999999999999999998
Q ss_pred CCCee-eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce---eeEEe--ccCCeeEEEEeCCCCEEEEEE
Q 009059 336 NPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK--CQSGATQMRFQPRLGRILAAA 409 (545)
Q Consensus 336 ~~~~~-~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~---~~~~~--~~~~v~~l~~sp~~~~l~~~~ 409 (545)
++... ...+..|...|.+++|+|++. ++++++.|+.|++||++.+.. ...+. +...+.+++|+|++..+++++
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 76532 234467899999999999975 556888999999999988763 22222 356799999999999999999
Q ss_pred CCCeEEEEEC------------------CCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEE
Q 009059 410 IENYISILDV------------------ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 410 ~dg~I~i~d~------------------~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~ 470 (545)
.|+.|++||+ ..++.+..+..|...|.+++|+|++.+|++++ |+.|++||++++ .++.
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~ 238 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVA 238 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEE
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC---ceeE
Confidence 9999999995 46788889989999999999999999999999 999999999887 6788
Q ss_pred EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC--CeE--------------------------------------
Q 009059 471 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE--NKT-------------------------------------- 510 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~--~~~-------------------------------------- 510 (545)
.+..|...|.+++|+|++.+|+++ .|+.|++||+.+ ++.
T Consensus 239 ~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (372)
T 1k8k_C 239 TLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA 317 (372)
T ss_dssp EEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--------
T ss_pred EEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccc
Confidence 888899999999999999877766 999999999987 431
Q ss_pred -EEe-ccCCCCeeEEEEe-CCC---CEEEEEeCCCcEEEcC
Q 009059 511 -LTL-SAHDKLVSSLAAS-TVN---GMVASASHDKCVKIWK 545 (545)
Q Consensus 511 -~~~-~~h~~~V~~l~~s-pd~---~~las~s~Dg~I~iWd 545 (545)
..+ .+|...|++++|+ +++ .+|++|+.||.|+|||
T Consensus 318 ~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 318 GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp -CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred cccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 222 3899999999976 666 8999999999999996
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=319.53 Aligned_cols=244 Identities=17% Similarity=0.283 Sum_probs=211.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEE----eccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST----LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 336 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~----l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~ 336 (545)
.|...|.+++|+|++ .|++|+.||.|+|||+++++.+.. +.+|.+.|++|+|+|++++|++|+.|++|++||+.+
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 466789999999985 788999999999999998875533 458999999999999999999999999999999998
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec---cCCeeEEEEeCCC-CEEEEEECCC
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRL-GRILAAAIEN 412 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~---~~~v~~l~~sp~~-~~l~~~~~dg 412 (545)
+.. +..+.+|...|.+++|++++..++++++.|+.|++||++++++...+.. ...+.+++|+|++ ..+++++.||
T Consensus 159 ~~~-~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 159 QVV-LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp TEE-EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred CcE-EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 764 8899999999999999999988888999999999999999988877643 3358899999965 4667788999
Q ss_pred eEEEEECCCCEEEEEecCCCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE
Q 009059 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 413 ~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~ 490 (545)
.|++||+++++++..+.+|...|++++|+|++ ++|++++ |+.|+|||+.++ + +..+.+|...|++++|+|++..
T Consensus 238 ~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---~-~~~~~~H~~~V~~v~~sp~~~~ 313 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---E-LFRSQAHRDFVRDATWSPLNHS 313 (344)
T ss_dssp EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---E-EEEECCCSSCEEEEEECSSSTT
T ss_pred cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---c-EEEEcCCCCCEEEEEEeCCCCe
Confidence 99999999999999999999999999999998 5788888 999999999876 3 3457889999999999999875
Q ss_pred -EEEEEcCCeEEEEeCCCCeE
Q 009059 491 -LLVIGCYETLELWNMTENKT 510 (545)
Q Consensus 491 -l~~~~~dg~I~iwd~~~~~~ 510 (545)
|++++.|++|++|++.+...
T Consensus 314 llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEEETTSCEEEEECCC---
T ss_pred EEEEEcCCCeEEEEECCCCCC
Confidence 56889999999999977543
No 30
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-37 Score=306.95 Aligned_cols=280 Identities=15% Similarity=0.235 Sum_probs=248.1
Q ss_pred eeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEE
Q 009059 252 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 331 (545)
Q Consensus 252 ~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~v 331 (545)
.+..+..+.+|.+.|++++| +++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 34567889999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCC--eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeC-CCCEEEE
Q 009059 332 WDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQP-RLGRILA 407 (545)
Q Consensus 332 wd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp-~~~~l~~ 407 (545)
|++.... ..+..+.+|...|.++.|. ..++++++.||.|++|| .++....+. +...+.++.|.+ ++..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 9987653 3467788999999999994 34677999999999999 556665555 456799999988 8899999
Q ss_pred EECCCeEEEEECCCCEEEEEecC-CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEc
Q 009059 408 AAIENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 485 (545)
Q Consensus 408 ~~~dg~I~i~d~~~~~~~~~~~~-h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~s 485 (545)
++.|+.|++|| .......+.. |...|.+++|+|++. +++++ |+.|++||++++ ..+..+..|...|.+++|+
T Consensus 161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~ 234 (313)
T 3odt_A 161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG---DVLRTYEGHESFVYCIKLL 234 (313)
T ss_dssp EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEEC
T ss_pred EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch---hhhhhhhcCCceEEEEEEe
Confidence 99999999999 5566667776 899999999999999 66666 999999999887 7788888999999999999
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 486 PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 486 p~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|++ .|++++.|+.|++||+.+++.. .+..|...|.+++|+|+++ +++++.||.|+|||
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred cCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 999 5999999999999999999887 7778999999999999998 66799999999996
No 31
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1e-37 Score=308.79 Aligned_cols=265 Identities=18% Similarity=0.287 Sum_probs=235.4
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.|..+++|+..++. .+..+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++
T Consensus 33 ~dg~v~lWd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 109 (304)
T 2ynn_A 33 YSGRVELWNYETQV---EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK 109 (304)
T ss_dssp TTSEEEEEETTTTE---EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS
T ss_pred CCCcEEEEECCCCc---eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC
Confidence 46789999998875 456778999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccCCeeE
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQ 395 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~~v~~ 395 (545)
++|++|+.|++|++||++++......+.+|...|.+++|+|.+..++++|+.|+.|++||+++......+. +...+..
T Consensus 110 ~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~ 189 (304)
T 2ynn_A 110 PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189 (304)
T ss_dssp SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEE
T ss_pred CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEE
Confidence 99999999999999999987666778899999999999999766788899999999999998877666554 2356888
Q ss_pred EEEeC--CCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEE
Q 009059 396 MRFQP--RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 472 (545)
Q Consensus 396 l~~sp--~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~ 472 (545)
+.|.| ++.++++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++ |+.|++||+.++ .++..+
T Consensus 190 ~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~---~~~~~~ 266 (304)
T 2ynn_A 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTL 266 (304)
T ss_dssp EEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---CEEEEE
T ss_pred EEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC---ceeeec
Confidence 89887 667899999999999999999999999999999999999999999999999 999999999887 778888
Q ss_pred eeCCCceEEEEEcCCCC-EEEEEEcCCeEEEEeCCCC
Q 009059 473 SCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 473 ~~~~~~v~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~ 508 (545)
..+...+.+++|+|++. .+++++.++.+.+|++.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~~ 303 (304)
T 2ynn_A 267 NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (304)
T ss_dssp CCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC--
T ss_pred cCCCccEEEEEECCCCCceEEEEecCCceEEEEeccC
Confidence 88999999999999885 3355556667888887653
No 32
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7.4e-39 Score=323.32 Aligned_cols=286 Identities=15% Similarity=0.274 Sum_probs=246.0
Q ss_pred EeecCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCeEEEEecc-----CCccEEEEEEcCC----CCEEEEE
Q 009059 257 QLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPS----LSRLATS 323 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spd----g~~latg~~dg~I~lwd~~~~~~~~~l~~-----h~~~V~~l~~sp~----~~~l~t~ 323 (545)
....+|.+.|++++|+|+ ...+++++.++.|+|||+.+++.+..+.. |...|++++|+|+ +.+|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 345589999999999984 44566666678999999998877766653 5678999999998 6799999
Q ss_pred eCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE----eccCCeeEEEEe
Q 009059 324 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KCQSGATQMRFQ 399 (545)
Q Consensus 324 s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~----~~~~~v~~l~~s 399 (545)
+.||.|++||+.+++. +..+.+|...|.+++|+|++..++++++.||.|++||+++++.+..+ .+...+.+++|+
T Consensus 92 ~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 92 GSRGIIRIINPITMQC-IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp ETTCEEEEECTTTCCE-EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred cCCCEEEEEEchhceE-eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 9999999999998765 77888999999999999944567779999999999999999988887 366789999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCEEEEE----------------------------ecCCCCCEEEEEEcCCCCEEEEEe
Q 009059 400 PRLGRILAAAIENYISILDVETQVCRLK----------------------------LQGHKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 400 p~~~~l~~~~~dg~I~i~d~~~~~~~~~----------------------------~~~h~~~I~~l~~sp~g~~l~s~s 451 (545)
|++..+++++.||.|++||+++++.... ...|...|.+++|+ +.+|++++
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 9999999999999999999997654332 33499999999998 77999988
Q ss_pred -CCcEEEEEcCCCCC-----------cceEEEEeeCCCceEEEEEcCC--CCEEEEEEcCCeEEEEeCCCCeE-----EE
Q 009059 452 -DELVRVWSIGSGSK-----------GECIHELSCTGNKFHSCVFHPT--FPSLLVIGCYETLELWNMTENKT-----LT 512 (545)
Q Consensus 452 -dg~I~vwd~~~~~~-----------~~~i~~~~~~~~~v~~~~~sp~--~~~l~~~~~dg~I~iwd~~~~~~-----~~ 512 (545)
|+.|++||+.+... ...+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.+++. ..
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence 99999999987532 1347778889999999999999 99999999999999999998742 25
Q ss_pred eccC--CCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 513 LSAH--DKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 513 ~~~h--~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+..| ...|++++|+|++++|++++.||.|+|||
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 6666 79999999999999999999999999997
No 33
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.7e-38 Score=321.05 Aligned_cols=285 Identities=16% Similarity=0.226 Sum_probs=236.3
Q ss_pred eEEEEeecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCeEEEEec--cCCccEEEEEEcC-CCCEEEEEeCCCe
Q 009059 253 FTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSP-SLSRLATSSADRT 328 (545)
Q Consensus 253 ~~~~~~l~~H~~~V~~l~~spdg-~~latg~~dg~I~lwd~~~~~~~~~l~--~h~~~V~~l~~sp-~~~~l~t~s~dg~ 328 (545)
+..+..+.+|.+.|++++|+|++ ++||+|+.|+.|+|||+.+++....+. +|...|.+++|+| ++.+|++++.|+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 34566789999999999999999 999999999999999999887776665 6999999999999 7899999999999
Q ss_pred EEEEECCCCCeeeeEecc---CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCC-
Q 009059 329 VRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG- 403 (545)
Q Consensus 329 I~vwd~~~~~~~~~~~~~---h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~- 403 (545)
|++||+... .+..+.. |...|.+++|+|++. ++++++.|+.|++||++ ++.+..+. +...+.+++|+|++.
T Consensus 143 i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 143 TTLRDFSGS--VIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp EEEEETTSC--EEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTT
T ss_pred EEEEECCCC--ceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCC
Confidence 999999853 2455543 448899999999975 56689999999999995 56666665 566799999999988
Q ss_pred EEEEEECCCeEEEEECCC----CEEEEEecCCCCCEEEEEEcC-CCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe----
Q 009059 404 RILAAAIENYISILDVET----QVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELS---- 473 (545)
Q Consensus 404 ~l~~~~~dg~I~i~d~~~----~~~~~~~~~h~~~I~~l~~sp-~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~---- 473 (545)
.+++++.|+.|++||+++ +..+..+ +|...|.+++|+| ++.+|++++ |+.|++||++++.....+....
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 899999999999999997 6667666 5999999999999 999999999 9999999998875433222111
Q ss_pred eCC----------CceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Eecc--CCCCeeEEEEeCCCCEEEEEeCCCc
Q 009059 474 CTG----------NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA--HDKLVSSLAASTVNGMVASASHDKC 540 (545)
Q Consensus 474 ~~~----------~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~--h~~~V~~l~~spd~~~las~s~Dg~ 540 (545)
.+. ..+..++|+|++++ +++.|+.|++||+.+++.+ .+.+ |...+..++|+|++++|++|+ ||.
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN 374 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence 111 33444666666665 6678999999999999887 5555 567788889999999999997 999
Q ss_pred EEEcC
Q 009059 541 VKIWK 545 (545)
Q Consensus 541 I~iWd 545 (545)
|+|||
T Consensus 375 i~iw~ 379 (383)
T 3ei3_B 375 ILIWN 379 (383)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 34
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.1e-38 Score=316.97 Aligned_cols=287 Identities=16% Similarity=0.206 Sum_probs=241.7
Q ss_pred EeecCCCCCeEEEEEcCCCCEE-EEEeC---CCcEEEEEcCCCeEEEEe-ccCCccEEEEEEcCC---CCEEEEEeCCCe
Q 009059 257 QLIPASTSKVESCHFSPDGKLL-ATGGH---DKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS---LSRLATSSADRT 328 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~l-atg~~---dg~I~lwd~~~~~~~~~l-~~h~~~V~~l~~sp~---~~~l~t~s~dg~ 328 (545)
..+.+|.+.|++++|+|++..| ++|+. |+.|+|||+.+++..... .+|...|.+++|+|+ +.+|++++.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 4567899999999999999655 56655 899999999988776443 379999999999998 699999999999
Q ss_pred EEEEECCCCCeeeeEeccCcccEEEEEE------eCCCCcEEEEEcCCCcEEEEECCCCc-eeeEEecc-----CCeeEE
Q 009059 329 VRVWDTENPDYSLRTFTGHSTTVMSLDF------HPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQ-----SGATQM 396 (545)
Q Consensus 329 I~vwd~~~~~~~~~~~~~h~~~V~~l~~------~p~~~~ll~s~s~dg~I~lwd~~~~~-~~~~~~~~-----~~v~~l 396 (545)
|++||+.++...+..+.+|...|.+++| +|++. ++++++.||.|++||+++++ .+..+... ..+.++
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 9999999877458889999999999965 56654 56699999999999999887 56666432 257888
Q ss_pred E----EeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcC---CCCEEEEEe-CCcEEEEEcCCCCCcce
Q 009059 397 R----FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT---SGEYLASVS-DELVRVWSIGSGSKGEC 468 (545)
Q Consensus 397 ~----~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp---~g~~l~s~s-dg~I~vwd~~~~~~~~~ 468 (545)
. |++++..+++++.|+.|++||+++++.... ..|...|.+++|+| ++.+|++++ |+.|++||++++.....
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 249 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG 249 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence 8 678999999999999999999999987554 45889999999999 899999999 99999999987644333
Q ss_pred EE--EEeeCCCceEEEEEcCCCC-EEEEEEcCCeEEEEeCCCC-------------------eEE-EeccCCCCeeEEEE
Q 009059 469 IH--ELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTEN-------------------KTL-TLSAHDKLVSSLAA 525 (545)
Q Consensus 469 i~--~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~-------------------~~~-~~~~h~~~V~~l~~ 525 (545)
+. .+..|...|.+++|+|+++ +|++++.|+.|++||+..+ +.+ .+.+|...|++++|
T Consensus 250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (357)
T 3i2n_A 250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW 329 (357)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEE
T ss_pred eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEE
Confidence 22 4458899999999999998 8999999999999999753 223 67789999999999
Q ss_pred eCCCCEEE-EEeCCCcEEEcC
Q 009059 526 STVNGMVA-SASHDKCVKIWK 545 (545)
Q Consensus 526 spd~~~la-s~s~Dg~I~iWd 545 (545)
+|++++|+ +++.||.|+|||
T Consensus 330 s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 330 SPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp CSSSTTEEEEEETTSEEEEEE
T ss_pred cCCCCeEEEEecCCCcEEEEE
Confidence 99999888 899999999996
No 35
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-38 Score=323.68 Aligned_cols=294 Identities=16% Similarity=0.242 Sum_probs=247.7
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEc----CCCe------EEEEecc------
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT----ESFT------VKSTLEE------ 303 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~-~latg~~dg~I~lwd~----~~~~------~~~~l~~------ 303 (545)
...+|++.... .......|.+.|++++|+|+++ +||+|+.|+.|+||++ .+++ ....+..
T Consensus 26 ~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 1r5m_A 26 IDSSDDLDGFV---KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA 102 (425)
T ss_dssp --------CCC---EECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-
T ss_pred ccccccchhhh---hheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccc
Confidence 34556554432 1223345679999999999999 9999999999999999 8887 4555544
Q ss_pred ----CCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC
Q 009059 304 ----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379 (545)
Q Consensus 304 ----h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~ 379 (545)
|...|++++|+|++++|++++.||.|++||. ++. .+..+..|...|.+++|+|++.. +++++.|+.|++||+.
T Consensus 103 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 103 SSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGA-LLNVLNFHRAPIVSVKWNKDGTH-IISMDVENVTILWNVI 179 (425)
T ss_dssp -----CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSC-EEEEECCCCSCEEEEEECTTSSE-EEEEETTCCEEEEETT
T ss_pred cccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCC-eeeeccCCCccEEEEEECCCCCE-EEEEecCCeEEEEECC
Confidence 6889999999999999999999999999994 344 47888899999999999999764 5588889999999999
Q ss_pred CCceeeEEeccCC----------------eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCC
Q 009059 380 NGSCAGVFKCQSG----------------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 443 (545)
Q Consensus 380 ~~~~~~~~~~~~~----------------v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~ 443 (545)
+++.+..+..... +.++.|+++ +.+++++.++.|++||+++++.+..+..|...|.+++|+|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 258 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT 258 (425)
T ss_dssp TTEEEEEECCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT
T ss_pred CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC
Confidence 9998887765443 888999998 77999999999999999999888889999999999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCee
Q 009059 444 GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVS 521 (545)
Q Consensus 444 g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~ 521 (545)
+++|++++ |+.|++||+.++ ..+..+..|...|.+++|+|++ .+++++.++.|++||+.+++.+ .+..|...|.
T Consensus 259 ~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~ 334 (425)
T 1r5m_A 259 NKLLLSASDDGTLRIWHGGNG---NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF 334 (425)
T ss_dssp TTEEEEEETTSCEEEECSSSB---SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEE
T ss_pred CCEEEEEcCCCEEEEEECCCC---ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEE
Confidence 99999999 999999999876 5566777889999999999999 9999999999999999999888 6778999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 522 SLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 522 ~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+++|+|++++|++++.||.|+|||
T Consensus 335 ~~~~s~~~~~l~~~~~dg~i~i~~ 358 (425)
T 1r5m_A 335 AGRISQDGQKYAVAFMDGQVNVYD 358 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEcCCCCEEEEEECCCeEEEEE
Confidence 999999999999999999999996
No 36
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-38 Score=329.41 Aligned_cols=284 Identities=14% Similarity=0.237 Sum_probs=236.7
Q ss_pred EEEee-cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC---Ce---EEEEeccCCccEEEEEEcCCCCEEEEEeCC
Q 009059 255 EFQLI-PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES---FT---VKSTLEEHTQWITDVRFSPSLSRLATSSAD 326 (545)
Q Consensus 255 ~~~~l-~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~---~~---~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d 326 (545)
.+..+ .+|.+.|++++|+| ++++||+|+.||.|+|||+.+ +. ....+ .|...|++++|+|++.+|++++.|
T Consensus 54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence 45667 89999999999999 999999999999999999876 33 23333 599999999999999999999999
Q ss_pred CeEEEEECC---CCCeeeeEecc------------CcccEEEEE--EeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec
Q 009059 327 RTVRVWDTE---NPDYSLRTFTG------------HSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 389 (545)
Q Consensus 327 g~I~vwd~~---~~~~~~~~~~~------------h~~~V~~l~--~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~ 389 (545)
|.|++||++ .+.. ...+.. +...+.++. +++++ .++++++.|+.|++||+++++++..+..
T Consensus 133 g~i~vwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 210 (437)
T 3gre_A 133 GQIIVLKVNHYQQESE-VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIEN 210 (437)
T ss_dssp SEEEEEEEEEEEETTE-EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEEeccccCCce-eeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence 999999995 3332 222221 445566666 44564 5677999999999999999999988874
Q ss_pred ---cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec-CCCCCEEEEEEcC----CCCEEEEEe-CCcEEEEEc
Q 009059 390 ---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNT----SGEYLASVS-DELVRVWSI 460 (545)
Q Consensus 390 ---~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~I~~l~~sp----~g~~l~s~s-dg~I~vwd~ 460 (545)
...+.+++|+|++.++++++.||.|++||+++++.+..+. .|...|.+++|+| ++.+|++++ |+.|++||+
T Consensus 211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290 (437)
T ss_dssp CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence 5789999999999999999999999999999999999886 7888999996664 677999999 899999999
Q ss_pred CCCCCcceEEEEee--------------------------CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Ee
Q 009059 461 GSGSKGECIHELSC--------------------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL 513 (545)
Q Consensus 461 ~~~~~~~~i~~~~~--------------------------~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~ 513 (545)
+++ .++..+.. |...|.+++|+ ++++|++++.|+.|++||+.+++.. .+
T Consensus 291 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 291 VKG---HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV 366 (437)
T ss_dssp TTT---EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred CCC---cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence 887 55555553 44568889999 7789999999999999999887754 33
Q ss_pred cc-------------------------------------CCCCeeEEEEeCC--CCEEEEEeCCCcEEEcC
Q 009059 514 SA-------------------------------------HDKLVSSLAASTV--NGMVASASHDKCVKIWK 545 (545)
Q Consensus 514 ~~-------------------------------------h~~~V~~l~~spd--~~~las~s~Dg~I~iWd 545 (545)
.+ |...|++++|+++ +.+|++|+.||.|+||+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 367 ISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 32 8999999999998 77999999999999996
No 37
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1e-37 Score=322.19 Aligned_cols=298 Identities=15% Similarity=0.214 Sum_probs=249.9
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~ 318 (545)
|..+++|+..++.. ...+..| ..+....|++++++||+|+.|+.|+|||+.+++....+.+|...|++++|+|+++
T Consensus 77 d~~v~i~d~~~~~~---~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 152 (420)
T 3vl1_A 77 DGHDFLFNTIIRDG---SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGE 152 (420)
T ss_dssp TTEEEEEECCSEET---TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSS
T ss_pred CCcEEEEEecccce---eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCC
Confidence 56788888776543 2334455 4455557899999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec----cCCee
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGAT 394 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~----~~~v~ 394 (545)
+|++++.|+.|++||+.+++. +..+.+|...|.+++|+|++. ++++++.|+.|++||+++++++..+.. ...+.
T Consensus 153 ~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~ 230 (420)
T 3vl1_A 153 ALISSSQDMQLKIWSVKDGSN-PRTLIGHRATVTDIAIIDRGR-NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVN 230 (420)
T ss_dssp EEEEEETTSEEEEEETTTCCC-CEEEECCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEE
T ss_pred EEEEEeCCCeEEEEeCCCCcC-ceEEcCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCcc
Confidence 999999999999999998765 788889999999999999975 555999999999999999998888763 22344
Q ss_pred ---------------------EEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec-CCCCCEEEEEEcCCCC-EEEEEe
Q 009059 395 ---------------------QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGE-YLASVS 451 (545)
Q Consensus 395 ---------------------~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~I~~l~~sp~g~-~l~s~s 451 (545)
+++|+|++..+++++.||.|++||+++++.+..+. .|...|.+++|+|++. +|++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~ 310 (420)
T 3vl1_A 231 SIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY 310 (420)
T ss_dssp EEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE
T ss_pred EEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe
Confidence 44557888899999999999999999988777665 4888999999999998 999998
Q ss_pred -CCcEEEEEcCCCCCcceEEEEee-CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC----------eEEEeccCCCC
Q 009059 452 -DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN----------KTLTLSAHDKL 519 (545)
Q Consensus 452 -dg~I~vwd~~~~~~~~~i~~~~~-~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~----------~~~~~~~h~~~ 519 (545)
|+.|++||++++.. .+..+.. +...+.++.+ +++.+|++++.|+.|++||+... ....+..|...
T Consensus 311 ~dg~i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (420)
T 3vl1_A 311 ENGMLAQWDLRSPEC--PVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDA 387 (420)
T ss_dssp TTSEEEEEETTCTTS--CSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCC
T ss_pred CCCeEEEEEcCCCcC--chhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcc
Confidence 99999999988642 3455555 5666777755 57789999999999999998762 23356688999
Q ss_pred eeEEEEeCCCC---EEEEEeCCCcEEEcC
Q 009059 520 VSSLAASTVNG---MVASASHDKCVKIWK 545 (545)
Q Consensus 520 V~~l~~spd~~---~las~s~Dg~I~iWd 545 (545)
|.+++|+|++. .|++++.+|.+.+|+
T Consensus 388 v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 388 VSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp CCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred eEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 99999999999 788888899999995
No 38
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.2e-36 Score=303.38 Aligned_cols=266 Identities=17% Similarity=0.276 Sum_probs=232.9
Q ss_pred cccceeeeeecCCc--eeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 237 PRDRVGRSAEVGKG--FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 237 ~~d~~~~~~~~~~~--~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
+.|..+++|+.... .....+..+.+|...|.+++|+|++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+
T Consensus 37 s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~ 116 (319)
T 3frx_A 37 SRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116 (319)
T ss_dssp ETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred cCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEc
Confidence 45678888887543 2234578899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCC-----CcEEEEEcCCCcEEEEECCCCceeeEEe-
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINNGSCAGVFK- 388 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~-----~~ll~s~s~dg~I~lwd~~~~~~~~~~~- 388 (545)
|++.+|++|+.|++|++||+.. . .+..+.+|...|.++.|.|.. ..++++++.|+.|++||+++.+....+.
T Consensus 117 ~~~~~l~s~s~D~~i~vwd~~~-~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 194 (319)
T 3frx_A 117 KKASMIISGSRDKTIKVWTIKG-Q-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194 (319)
T ss_dssp TTSCEEEEEETTSCEEEEETTS-C-EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCC-C-eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecC
Confidence 9999999999999999999974 3 477888999999999999863 2367799999999999999988877765
Q ss_pred ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcce
Q 009059 389 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC 468 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~ 468 (545)
+...+.+++|+|++.+|++++.||.|++||+++++.+..+.. ...|.+++|+|++.+|+++.++.+++|++... ..
T Consensus 195 h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~---~~ 270 (319)
T 3frx_A 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ---YL 270 (319)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEETTEEEEEEETTE---EE
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcC---ee
Confidence 456799999999999999999999999999999999988875 46899999999999999999888999999765 44
Q ss_pred EEEEe--------eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 469 IHELS--------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 469 i~~~~--------~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
+..+. .+...+.+++|+|++++|++++.|+.|++||+.++
T Consensus 271 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 271 VDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred eeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 44443 23567899999999999999999999999998654
No 39
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.4e-37 Score=307.18 Aligned_cols=258 Identities=23% Similarity=0.345 Sum_probs=231.1
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----eEEEEeccCCccEEEEEE
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRF 313 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~----~~~~~l~~h~~~V~~l~~ 313 (545)
.|..+++|+..++.. +..+..|...|.+++|+|++++||+|+.|+.|++|++.+. +....+.+|...|.++.|
T Consensus 75 ~Dg~v~iWd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (340)
T 1got_B 75 QDGKLIIWDSYTTNK---VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 151 (340)
T ss_dssp TTTEEEEEETTTCCE---EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEE
T ss_pred CCCcEEEEECCCCCc---ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEE
Confidence 467889999887754 5567889999999999999999999999999999999865 456778899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCC
Q 009059 314 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSG 392 (545)
Q Consensus 314 sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~ 392 (545)
++++. |++++.|++|++||+.++.. +..+.+|...|.+++|+|++. ++++|+.|+.|++||++++.+...+. +...
T Consensus 152 ~~~~~-l~s~s~d~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~ 228 (340)
T 1got_B 152 LDDNQ-IVTSSGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESD 228 (340)
T ss_dssp EETTE-EEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSC
T ss_pred CCCCc-EEEEECCCcEEEEECCCCcE-EEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEEEEcCCcCC
Confidence 98764 89999999999999998764 788999999999999999865 66699999999999999999888886 4557
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC--CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceE
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 469 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i 469 (545)
+.+++|+|++..|++++.|+.|++||++++..+..+.. +...|.+++|+|++++|++++ |+.|++||+.++ ..+
T Consensus 229 v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~ 305 (340)
T 1got_B 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRA 305 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEE
T ss_pred EEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC---cEe
Confidence 99999999999999999999999999999988777653 335799999999999999999 999999999876 677
Q ss_pred EEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 470 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 470 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
..+.+|...|.+++|+|++.+|++++.|+.|+|||
T Consensus 306 ~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 88899999999999999999999999999999997
No 40
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.3e-39 Score=327.68 Aligned_cols=285 Identities=15% Similarity=0.192 Sum_probs=230.1
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--eEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 258 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 258 ~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~--~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
.+..|.++|++++|+|++++||+|+.|+.|+|||+.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34557789999999999999999999999999999988 7888899999999999999999999999999999999998
Q ss_pred CCC--eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc---eeeEEe--ccCCeeEEEEeCCCCEEEEE
Q 009059 336 NPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFK--CQSGATQMRFQPRLGRILAA 408 (545)
Q Consensus 336 ~~~--~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~---~~~~~~--~~~~v~~l~~sp~~~~l~~~ 408 (545)
++. .....+.+|...|.+++|+|++.. |++++.|+.|++||+++++ +...+. +...+.+++|+|++.+++++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDK-FAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSC-CEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCE-EEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 765 235677789999999999998765 4588899999999999877 355555 56779999999999999999
Q ss_pred ECCCeEEEEECC------------------CCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCc-ce
Q 009059 409 AIENYISILDVE------------------TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-EC 468 (545)
Q Consensus 409 ~~dg~I~i~d~~------------------~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~-~~ 468 (545)
+.|+.|++||++ .++.+..+ +|...|.+++|+|++++|++++ |+.|++||+.++... ..
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 999999999985 35566677 8999999999999999999999 999999999987431 12
Q ss_pred EEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe---------------------------------------
Q 009059 469 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------------------------------------- 509 (545)
Q Consensus 469 i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~--------------------------------------- 509 (545)
+..+..|...|.+++|+|++++|++++.++. .+|+.....
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESAIVAAGYNYSP-ILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRS 322 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTEEEEEESSSSE-EEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------
T ss_pred eEeecCCCCceEEEEEcCCCCEEEEEcCCcE-EEEEeCCCceEEEeeecccccccccccccccccccccccccccccccc
Confidence 6677889999999999999998877765554 477665221
Q ss_pred EE-E-------------eccCCCCeeEEEEeCCC-C---EEEEEeCCCcEEEcC
Q 009059 510 TL-T-------------LSAHDKLVSSLAASTVN-G---MVASASHDKCVKIWK 545 (545)
Q Consensus 510 ~~-~-------------~~~h~~~V~~l~~spd~-~---~las~s~Dg~I~iWd 545 (545)
.. . ...|...|+++++.+.. . .|+||+.||.|+|||
T Consensus 323 ~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 323 TFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp --------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 00 0 01299999999976544 3 699999999999997
No 41
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-38 Score=335.50 Aligned_cols=305 Identities=9% Similarity=0.046 Sum_probs=236.8
Q ss_pred CcccceeeeeecCCcee-eEEEEeecCCCCCeEEEEEcCC------CCEEEEEeCCCcEEEEEcCCCeE-----------
Q 009059 236 DPRDRVGRSAEVGKGFT-FTEFQLIPASTSKVESCHFSPD------GKLLATGGHDKKAVLWCTESFTV----------- 297 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~-~~~~~~l~~H~~~V~~l~~spd------g~~latg~~dg~I~lwd~~~~~~----------- 297 (545)
.+.|..+++|+...+.. ......+.+|.+.|.+++|+|+ +.+||+++.||+|+|||+.+++.
T Consensus 179 ~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p 258 (524)
T 2j04_B 179 EKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKP 258 (524)
T ss_dssp ---CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSC
T ss_pred CCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCc
Confidence 45788999999877642 2234557789999999999997 57999999999999999976532
Q ss_pred EEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEE--EEeCCCCcEEEEEcCCCcEEE
Q 009059 298 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL--DFHPSKEDLLCSCDNNSEIRY 375 (545)
Q Consensus 298 ~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l--~~~p~~~~ll~s~s~dg~I~l 375 (545)
...+.+|...|++++|+++ ..|++|+.||+|++||++++..+...+.+|...|.++ +|+|++..+|++|+.|++|++
T Consensus 259 ~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 259 SLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp SEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred eEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 2467889999999999986 4899999999999999997765566788999999999 567775478889999999999
Q ss_pred EECCCCceeeEEeccC---CeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-
Q 009059 376 WSINNGSCAGVFKCQS---GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 451 (545)
Q Consensus 376 wd~~~~~~~~~~~~~~---~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s- 451 (545)
||++++++...+..+. .+.+++|+|++..+++++.|+.|++||++++.++..+.+|...|++++|+|+|.+|++|+
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~ 417 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSA 417 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEET
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEEC
Confidence 9999888776665332 478999999999999999999999999999988888889999999999999999999999
Q ss_pred CCcEEEEEcCCCCCcceEEEE--eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC--CCeEEEeccCCCCeeEEEEeC
Q 009059 452 DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT--ENKTLTLSAHDKLVSSLAAST 527 (545)
Q Consensus 452 dg~I~vwd~~~~~~~~~i~~~--~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~--~~~~~~~~~h~~~V~~l~~sp 527 (545)
|++|++||+..... ...... ..+...+..++|+|++..+ .. ++.+.+|+.. ......+.+|...|.+++|+|
T Consensus 418 Dgtv~lwd~~~~~~-~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~--~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp 493 (524)
T 2j04_B 418 DGSLIITNAARRLL-HGIKNSSATQKSLRLWKWDYSIKDDKY-RI--DSSYEVYPLTVNDVSKAKIDAHGINITCTKWNE 493 (524)
T ss_dssp TTEEECCBSCSSTT-TCC------CCCCEEEECBCCSSSCEE-EE--CCCCCCCC-------------CCCSCCCEEECC
T ss_pred CCEEEEEechHhhc-cccccCccceeeeEEEEeccCCCCCeE-Ec--cCCceecccccCCcceeeecCCCceEEEEECCC
Confidence 99999999865311 110000 0112257899999999844 22 2223344332 333447889999999999999
Q ss_pred CCC---EEEEEeCCCcEEEcC
Q 009059 528 VNG---MVASASHDKCVKIWK 545 (545)
Q Consensus 528 d~~---~las~s~Dg~I~iWd 545 (545)
++. +||+|+.||.|+||+
T Consensus 494 ~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 494 TSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp STTTTTEEEEECTTSEEEEEE
T ss_pred CCCccHHHHhhccCceEEEEE
Confidence 964 999999999999995
No 42
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-38 Score=324.48 Aligned_cols=278 Identities=19% Similarity=0.306 Sum_probs=243.4
Q ss_pred CeEEEEEcCCCC-EEEEE----------eCCCcEEEEEcCCCe---EEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEE
Q 009059 265 KVESCHFSPDGK-LLATG----------GHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 330 (545)
Q Consensus 265 ~V~~l~~spdg~-~latg----------~~dg~I~lwd~~~~~---~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~ 330 (545)
.|.+++|+|+++ +||+| +.|+.|+|||+.+++ .+..+ .|...|.+++|+|++++|++++.||.|+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 488899999987 99999 889999999998875 33333 5889999999999999999999999999
Q ss_pred EEECCC---CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc------eeeEE----eccCCeeEEE
Q 009059 331 VWDTEN---PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------CAGVF----KCQSGATQMR 397 (545)
Q Consensus 331 vwd~~~---~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~------~~~~~----~~~~~v~~l~ 397 (545)
+||+.. +...+..+.+|...|.+++|+|++..++++++.|+.|++||+.+++ ....+ .+...+.+++
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence 999987 2335788889999999999999855677799999999999999876 33322 3556799999
Q ss_pred EeCC-CCEEEEEECCCeEEEEECCCCEEEEEecCC------CCCEEEEEEcCCC-CEEEEEe-CC---cEEEEEcCCCCC
Q 009059 398 FQPR-LGRILAAAIENYISILDVETQVCRLKLQGH------KNQVHSVCWNTSG-EYLASVS-DE---LVRVWSIGSGSK 465 (545)
Q Consensus 398 ~sp~-~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h------~~~I~~l~~sp~g-~~l~s~s-dg---~I~vwd~~~~~~ 465 (545)
|+|+ +..+++++.|+.|++||+++++.+..+..+ ...|.+++|+|++ .+|++++ |+ .|++||++++.
T Consensus 173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~- 251 (416)
T 2pm9_A 173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN- 251 (416)
T ss_dssp ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-
T ss_pred eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-
Confidence 9998 678888899999999999999999988876 7899999999997 6888888 77 99999998753
Q ss_pred cceEEEEe-eCCCceEEEEEcC-CCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCC-CEEEEEeCCCcE
Q 009059 466 GECIHELS-CTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCV 541 (545)
Q Consensus 466 ~~~i~~~~-~~~~~v~~~~~sp-~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~-~~las~s~Dg~I 541 (545)
..+..+. .|...|.+++|+| ++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++ .+|++++.||.|
T Consensus 252 -~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i 330 (416)
T 2pm9_A 252 -TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKI 330 (416)
T ss_dssp -SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEE
T ss_pred -CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcE
Confidence 3344566 7889999999999 9999999999999999999999887 778999999999999999 899999999999
Q ss_pred EEcC
Q 009059 542 KIWK 545 (545)
Q Consensus 542 ~iWd 545 (545)
+|||
T Consensus 331 ~iw~ 334 (416)
T 2pm9_A 331 EVQT 334 (416)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
No 43
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.8e-37 Score=314.22 Aligned_cols=265 Identities=14% Similarity=0.224 Sum_probs=217.7
Q ss_pred ccceeeeeecCCceeeE-EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEE----EeccCCccEEEEE
Q 009059 238 RDRVGRSAEVGKGFTFT-EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS----TLEEHTQWITDVR 312 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~-~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~----~l~~h~~~V~~l~ 312 (545)
+|..+++|+..++.... ......+|...|++++|+|++++| +++.||.|+|||+.+++... ...+|...|++++
T Consensus 68 wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~ 146 (357)
T 4g56_B 68 WGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLS 146 (357)
T ss_dssp CCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEE
T ss_pred ccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEE
Confidence 35678888877664332 234456799999999999998654 57789999999998876543 3458999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe---c
Q 009059 313 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---C 389 (545)
Q Consensus 313 ~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~---~ 389 (545)
|+|++++|++|+.|+.|++||+.++.. +..+.+|...|.+++|++++..++++++.||.|++||++++++...+. .
T Consensus 147 ~spdg~~l~sgs~dg~v~iwd~~~~~~-~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~ 225 (357)
T 4g56_B 147 VFSDGTQAVSGGKDFSVKVWDLSQKAV-LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCAS 225 (357)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTC
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCcE-EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccc
Confidence 999999999999999999999998764 888999999999999999988788899999999999999988776554 3
Q ss_pred cCCeeEEEEeCCCC-EEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCc
Q 009059 390 QSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKG 466 (545)
Q Consensus 390 ~~~v~~l~~sp~~~-~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~ 466 (545)
...+.+++|+|+++ .+++++.|+.|++||+++++.+..+.+|...|++++|+|++ ++|++++ |+.|+|||+.++
T Consensus 226 ~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~--- 302 (357)
T 4g56_B 226 DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS--- 302 (357)
T ss_dssp CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---
T ss_pred cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---
Confidence 34589999999754 67778899999999999999999999999999999999987 6788888 999999999876
Q ss_pred ceEEEEeeCCCceEEEEEcC-CCCEEEEEEcCCeEEEEeCCCC
Q 009059 467 ECIHELSCTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 467 ~~i~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
+++.. ..|...|++++|+| ++.+|++++.|+.|++||+...
T Consensus 303 ~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 303 EVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred cEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 45544 47999999999998 7899999999999999999654
No 44
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.7e-36 Score=315.10 Aligned_cols=280 Identities=18% Similarity=0.302 Sum_probs=245.7
Q ss_pred EEEEeecCCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 009059 254 TEFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 332 (545)
Q Consensus 254 ~~~~~l~~H~~~V-~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vw 332 (545)
.....+.+|.+.| .|+.| ++++|++|+.||.|++||+.+++.+..+.+|...|++++|++++ +|++|+.||+|++|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 3456788999885 66666 56799999999999999999999999999999999999999987 99999999999999
Q ss_pred ECCCCCeeeeEeccCcccEEEEEEeCC-CCcEEEEEcCCCcEEEEECCCCceee-----------------------EEe
Q 009059 333 DTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAG-----------------------VFK 388 (545)
Q Consensus 333 d~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~ll~s~s~dg~I~lwd~~~~~~~~-----------------------~~~ 388 (545)
|+.++.. +..+.+|...|.+++|++. ...++++++.||.|++||+.++.... .+.
T Consensus 189 d~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 189 DIKKGCC-THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp ETTTTEE-EEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred ECCCCcE-EEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 9998764 8889999999999999952 24677799999999999998776432 121
Q ss_pred -ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCc
Q 009059 389 -CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 466 (545)
Q Consensus 389 -~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~ 466 (545)
+...+.+ +++++..+++++.|+.|++||+++++.+..+.+|...|.+++|+|++.+|++++ |+.|++||++++
T Consensus 268 ~~~~~v~~--~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--- 342 (464)
T 3v7d_B 268 GHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG--- 342 (464)
T ss_dssp CCSSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT---
T ss_pred CccceEEE--EcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---
Confidence 2223444 467789999999999999999999999999999999999999999999999999 999999999887
Q ss_pred ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 467 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 467 ~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.++..+..|...|.++.|+ +.+|++++.|+.|++||+.+........|...+..++|++++++|++++ ||.|+|||
T Consensus 343 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 343 ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 7888999999999999997 5789999999999999999988775556888899999999999999998 89999996
No 45
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.9e-37 Score=315.03 Aligned_cols=279 Identities=13% Similarity=0.089 Sum_probs=226.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-------CcEEEEEcCCCeE----------EEEeccCCccEEEEEEcCCCCEEEEEe--
Q 009059 264 SKVESCHFSPDGKLLATGGHD-------KKAVLWCTESFTV----------KSTLEEHTQWITDVRFSPSLSRLATSS-- 324 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~d-------g~I~lwd~~~~~~----------~~~l~~h~~~V~~l~~sp~~~~l~t~s-- 324 (545)
-+|+|++|+||+++||+|+.+ +.|+||++..... ...+..|...|.++++. +..+++|.
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 479999999999999999754 3599999875421 23567888899988875 45666653
Q ss_pred ---------CCCeEEEEECCCCCeeeeE--------eccCcccEEEEEEeCCCCcEE-EEEcCCCcEEEEECCCCceeeE
Q 009059 325 ---------ADRTVRVWDTENPDYSLRT--------FTGHSTTVMSLDFHPSKEDLL-CSCDNNSEIRYWSINNGSCAGV 386 (545)
Q Consensus 325 ---------~dg~I~vwd~~~~~~~~~~--------~~~h~~~V~~l~~~p~~~~ll-~s~s~dg~I~lwd~~~~~~~~~ 386 (545)
.|+.|++|++......+.. ...+...+.+++|+|+|..++ ++++.|++|++||+.+++++..
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~ 172 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE 172 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence 4778999998765432221 123455689999999998764 4566899999999999999999
Q ss_pred EeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEE--EecCCCCCEEEEEEcCCCCEEEEEe-CC----cEEEEE
Q 009059 387 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWS 459 (545)
Q Consensus 387 ~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~--~~~~h~~~I~~l~~sp~g~~l~s~s-dg----~I~vwd 459 (545)
+.+...|.+++|+|++.++++++ ++.+.+|+..++..+. ....|...|.+++|+|++.++++++ |+ .+++|+
T Consensus 173 ~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~ 251 (365)
T 4h5i_A 173 IETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS 251 (365)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred eCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence 99889999999999988877776 5567777777765543 3456888999999999999999988 65 688898
Q ss_pred cCCCCC-cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-E-eccCCCCeeEEEEeCCCCEEEEEe
Q 009059 460 IGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T-LSAHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 460 ~~~~~~-~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~-~~~h~~~V~~l~~spd~~~las~s 536 (545)
+..... ......+..|...|++++|+|++++|++|+.|+.|+|||+.+++++ . +.+|...|++|+|+||+++||+|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S 331 (365)
T 4h5i_A 252 IKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS 331 (365)
T ss_dssp EETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE
T ss_pred cccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe
Confidence 876532 1234567788899999999999999999999999999999999988 4 468999999999999999999999
Q ss_pred CCCcEEEcC
Q 009059 537 HDKCVKIWK 545 (545)
Q Consensus 537 ~Dg~I~iWd 545 (545)
.|++|+|||
T Consensus 332 ~D~tvrvw~ 340 (365)
T 4h5i_A 332 AANTIHIIK 340 (365)
T ss_dssp TTSEEEEEE
T ss_pred CCCeEEEEE
Confidence 999999996
No 46
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.5e-38 Score=324.95 Aligned_cols=283 Identities=18% Similarity=0.247 Sum_probs=224.6
Q ss_pred EeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeE--EEEeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEE
Q 009059 257 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 332 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~~~--~~~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vw 332 (545)
....+|...|+||+|+| ++++||+|+.||.|+|||+.+++. ...+.+|.+.|++|+|+| ++.+|++|+.||+|++|
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 34567899999999999 677999999999999999987654 445678999999999998 68899999999999999
Q ss_pred ECCCCCeeeeEec--cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCC-EEEEEE
Q 009059 333 DTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-RILAAA 409 (545)
Q Consensus 333 d~~~~~~~~~~~~--~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~~~~ 409 (545)
|++.... ..... .+...+.+++|+|++. +|++|+.||.|++||++.........+...|.+++|+|++. .+++++
T Consensus 193 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s 270 (435)
T 4e54_B 193 DFKGNIL-RVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATAS 270 (435)
T ss_dssp ETTSCEE-EEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred eccCCce-eEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEec
Confidence 9986532 22222 2345678999999975 56699999999999997544333334567799999999876 566788
Q ss_pred CCCeEEEEECCCCEEEE---EecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCC------ce
Q 009059 410 IENYISILDVETQVCRL---KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN------KF 479 (545)
Q Consensus 410 ~dg~I~i~d~~~~~~~~---~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~------~v 479 (545)
.|+.|++||+++.+... ...+|...|++++|+|+|.+|++++ |+.|+|||+.++ .+...+..|.. .+
T Consensus 271 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~ 347 (435)
T 4e54_B 271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW---DCPLGLIPHPHRHFQHLTP 347 (435)
T ss_dssp TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS---SSEEEECCCCCCCCSSSCC
T ss_pred CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC---ccceEEeccccccccccee
Confidence 99999999998765432 3356999999999999999999999 999999999887 44444443332 23
Q ss_pred EEEEEcCCCCEEEEEEc------------CCeEEEEeCCCCeEE-Ee-ccCCCCeeEE-EEeCCCCEEEEEeCCCcEEEc
Q 009059 480 HSCVFHPTFPSLLVIGC------------YETLELWNMTENKTL-TL-SAHDKLVSSL-AASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 480 ~~~~~sp~~~~l~~~~~------------dg~I~iwd~~~~~~~-~~-~~h~~~V~~l-~~spd~~~las~s~Dg~I~iW 544 (545)
..+.|+|++..++++.. ++.|++||..+++.+ .+ .+|...|.++ +|+|++.+||+|+ |+.|+||
T Consensus 348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW 426 (435)
T 4e54_B 348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIW 426 (435)
T ss_dssp CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEEC
T ss_pred EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEE
Confidence 45677777777766643 247999999999887 43 4788889887 6999999999876 8899999
Q ss_pred C
Q 009059 545 K 545 (545)
Q Consensus 545 d 545 (545)
|
T Consensus 427 ~ 427 (435)
T 4e54_B 427 S 427 (435)
T ss_dssp C
T ss_pred E
Confidence 7
No 47
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.8e-36 Score=303.63 Aligned_cols=267 Identities=15% Similarity=0.213 Sum_probs=222.1
Q ss_pred cccceeeeeecCCce----eeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEE
Q 009059 237 PRDRVGRSAEVGKGF----TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 312 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~----~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~ 312 (545)
+.|..+++|+...+. .......+.+|...|.+++|+|++.+|++|+.|++|+|||+.+++.+..+.+|...|.+++
T Consensus 46 s~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~ 125 (343)
T 2xzm_R 46 SRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVA 125 (343)
T ss_dssp ETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEE
T ss_pred cCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEE
Confidence 346677888876542 2345678899999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCeeeeEe---ccCcccEEEEEEeCCCC---------cEEEEEcCCCcEEEEECCC
Q 009059 313 FSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKE---------DLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 313 ~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~---~~h~~~V~~l~~~p~~~---------~ll~s~s~dg~I~lwd~~~ 380 (545)
|+|++++|++++.|++|++||+... . .... .+|...|.+++|+|++. .++++++.|+.|++||..
T Consensus 126 ~sp~~~~l~s~~~d~~i~~wd~~~~-~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~- 202 (343)
T 2xzm_R 126 FSPDNRQILSAGAEREIKLWNILGE-C-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN- 202 (343)
T ss_dssp ECSSTTEEEEEETTSCEEEEESSSC-E-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-
T ss_pred ECCCCCEEEEEcCCCEEEEEeccCC-c-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-
Confidence 9999999999999999999999743 2 2222 37889999999999863 467799999999999954
Q ss_pred CceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC-CEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEE
Q 009059 381 GSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVW 458 (545)
Q Consensus 381 ~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~-~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vw 458 (545)
......+. +...+.+++|+|++.+|++++.|+.|++||+.. ......+. +...|.+++|+|++.+++++.|+.|++|
T Consensus 203 ~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw 281 (343)
T 2xzm_R 203 FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIF 281 (343)
T ss_dssp TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEE
T ss_pred CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEE
Confidence 55555554 556799999999999999999999999999954 33333443 5567999999999999988889999999
Q ss_pred EcCCCCCcceEEEEe-----------eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 459 SIGSGSKGECIHELS-----------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 459 d~~~~~~~~~i~~~~-----------~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
|+.+..... +..+. +|...|.+++|+|++++|++++.|+.|++|++.++
T Consensus 282 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 282 NLMTQSKAP-VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp ESSSCCSCS-EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EeCCCCCCc-eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 998764322 22332 56788999999999999999999999999998654
No 48
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5e-36 Score=302.19 Aligned_cols=273 Identities=22% Similarity=0.350 Sum_probs=225.9
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--eEEEEeccCCccEEEEEEcC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSP 315 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~--~~~~~l~~h~~~V~~l~~sp 315 (545)
.|..+++|+...+..........+|.+.|.+++|+|++++||+|+.|+.|+||++..+ +.+..+.+|...|.+++|+|
T Consensus 36 ~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp 115 (345)
T 3fm0_A 36 GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP 115 (345)
T ss_dssp TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT
T ss_pred CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC
Confidence 4677899988877544444556799999999999999999999999999999998876 45788899999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCC--eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee--eEEe-cc
Q 009059 316 SLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFK-CQ 390 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~--~~~~-~~ 390 (545)
++++|++|+.|++|++||+.+.. ..+..+.+|...|.+++|+|++. +|++++.|+.|++||++++... ..+. +.
T Consensus 116 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~ 194 (345)
T 3fm0_A 116 SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHE 194 (345)
T ss_dssp TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCC
Confidence 99999999999999999998654 23567889999999999999976 5559999999999999887543 3443 45
Q ss_pred CCeeEEEEeCCCCEEEEEECCCeEEEEECCC---------------CEEEEEecC-CCCCEEEEEEcCCCCEEEEEe-CC
Q 009059 391 SGATQMRFQPRLGRILAAAIENYISILDVET---------------QVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DE 453 (545)
Q Consensus 391 ~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~---------------~~~~~~~~~-h~~~I~~l~~sp~g~~l~s~s-dg 453 (545)
..|.+++|+|++.+|++++.|+.|++||... ..++..+.+ |...|.+++|+|++.+|++++ |+
T Consensus 195 ~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~ 274 (345)
T 3fm0_A 195 STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDD 274 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTS
T ss_pred CceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCC
Confidence 6799999999999999999999999999632 234555655 889999999999999999998 99
Q ss_pred cEEEEEcCCCCCc-c-----eEEEEeeCCCceEEEEEcCCCC-EEEEEEcCCeEEEEeCCCCeEE
Q 009059 454 LVRVWSIGSGSKG-E-----CIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 454 ~I~vwd~~~~~~~-~-----~i~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
.|++|+....... . .......|...|.+++|+|++. +|++++.|+.|++|++.+++..
T Consensus 275 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 275 AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp CEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred eEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 9999998764321 1 1222357889999999999984 8999999999999999887765
No 49
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.2e-36 Score=298.17 Aligned_cols=252 Identities=19% Similarity=0.283 Sum_probs=212.9
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC--CeEEEEeccCCccEEEEEEcC--CCCEEEEEeCCCeEEE
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRV 331 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~--~~~~~~l~~h~~~V~~l~~sp--~~~~l~t~s~dg~I~v 331 (545)
+..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.. .+.+..+.+|.+.|++++|++ ++++|++|+.|++|+|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 356789999999999999999999999999999999974 467789999999999999986 3899999999999999
Q ss_pred EECCCCC-eeeeEeccCcccEEEEEEeCCC-CcEEEEEcCCCcEEEEECCCCce--eeEE-eccCCeeEEEEeCC-----
Q 009059 332 WDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSC--AGVF-KCQSGATQMRFQPR----- 401 (545)
Q Consensus 332 wd~~~~~-~~~~~~~~h~~~V~~l~~~p~~-~~ll~s~s~dg~I~lwd~~~~~~--~~~~-~~~~~v~~l~~sp~----- 401 (545)
||+.++. ..+..+.+|...|.+++|+|+. ..+|++++.|+.|++||++++.. ...+ .+...+.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9998764 2356778899999999999972 35677999999999999987632 2223 35567999999996
Q ss_pred --------CCEEEEEECCCeEEEEECCCCE----EEEEecCCCCCEEEEEEcCCC---CEEEEEe-CCcEEEEEcCCCCC
Q 009059 402 --------LGRILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 402 --------~~~l~~~~~dg~I~i~d~~~~~----~~~~~~~h~~~I~~l~~sp~g---~~l~s~s-dg~I~vwd~~~~~~ 465 (545)
+..|++++.|+.|++||++++. ....+.+|...|.+++|+|++ .+|++++ |++|+|||+.....
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~ 241 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG 241 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence 4689999999999999998754 667889999999999999985 8899998 99999999987532
Q ss_pred cceEEEE--eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 466 GECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 466 ~~~i~~~--~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
......+ ..+...|.+++|+|++++|++++.|+.|+||+...
T Consensus 242 ~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 1222233 45678899999999999999999999999999763
No 50
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.7e-36 Score=302.37 Aligned_cols=278 Identities=17% Similarity=0.241 Sum_probs=242.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-- 339 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~-- 339 (545)
|.+.|.+++|+|||++++++..++.+.+|............+|...|++++|+|++++|++++ ||.|++||+.++..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 445689999999999999998888887777666555555568999999999999999999998 99999999987543
Q ss_pred eeeEec--cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc--eeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeE
Q 009059 340 SLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFK-CQSGATQMRFQPRLGRILAAAIENYI 414 (545)
Q Consensus 340 ~~~~~~--~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~--~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I 414 (545)
.+..+. +|...|.+++|+|++. ++++++.|+.|++||+.+++ ....+. +...+.+++|+|++..+++++.|+.|
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 123333 7899999999999975 55588889999999999887 344443 34569999999999999999999999
Q ss_pred EEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 415 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 415 ~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
++||+++++.+..+..|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+ .+...+.+++|+|++++|++
T Consensus 166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~-~~~~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQH-DFTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred EEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---ceEeee-cCCCceEEEEECCCCCEEEE
Confidence 9999999999999999999999999999999999998 999999999886 555554 36788999999999999999
Q ss_pred EEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 494 IGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 494 ~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++.++.|++||+.+++...+..|...|.+++|+|++++|++++.||.|++||
T Consensus 242 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 9999999999999999888899999999999999999999999999999996
No 51
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=8.2e-37 Score=305.98 Aligned_cols=278 Identities=14% Similarity=0.142 Sum_probs=242.8
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe---EEEEeccCCccEEEEEEcCCCC-EEEEEeCCCeEE
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVR 330 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~---~~~~l~~h~~~V~~l~~sp~~~-~l~t~s~dg~I~ 330 (545)
.+....+|.+.|++++|+|++++|++++.|+.|+||++.+++ ....+..|...|.+++|+|+++ +|++++.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred ceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 345567899999999999999999999999999999998876 3455568999999999999999 999999999999
Q ss_pred EEEC-CCCCeeeeEecc--CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC---------CceeeEEeccCCeeEEEE
Q 009059 331 VWDT-ENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRF 398 (545)
Q Consensus 331 vwd~-~~~~~~~~~~~~--h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~---------~~~~~~~~~~~~v~~l~~ 398 (545)
+||+ .++. ...+.+ |...|.+++|+| + .++++++.|+.|++||+++ ++++..+.+...+.+++|
T Consensus 83 ~wd~~~~~~--~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 158 (342)
T 1yfq_A 83 KVDLIGSPS--FQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158 (342)
T ss_dssp EECSSSSSS--EEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred EEEeccCCc--eEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEe
Confidence 9999 7664 477788 999999999999 4 5666999999999999988 777777777888999999
Q ss_pred eCCCCEEEEEECCCeEEEEECCC-CE--EEEEecCCCCCEEEEEEcC-CCCEEEEEe-CCcEEEEEcCCCC---CcceEE
Q 009059 399 QPRLGRILAAAIENYISILDVET-QV--CRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGS---KGECIH 470 (545)
Q Consensus 399 sp~~~~l~~~~~dg~I~i~d~~~-~~--~~~~~~~h~~~I~~l~~sp-~g~~l~s~s-dg~I~vwd~~~~~---~~~~i~ 470 (545)
++++ +++++.++.|++||+++ +. .......|...|.+++|+| ++.+|++++ |+.|++|++.... ......
T Consensus 159 ~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 159 NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 9985 99999999999999998 43 3445556889999999999 999999999 9999999998751 014455
Q ss_pred EEeeCCC---------ceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccC-CCCeeEEEEeCCCCEEEEEeCCC
Q 009059 471 ELSCTGN---------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 471 ~~~~~~~---------~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h-~~~V~~l~~spd~~~las~s~Dg 539 (545)
.+..|.. .|.+++|+|++++|++++.|+.|++||+.+++.+ .+.+| ...|.+++ |++++|++++.||
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence 6666654 9999999999999999999999999999999887 77788 99999999 9999999999999
Q ss_pred c
Q 009059 540 C 540 (545)
Q Consensus 540 ~ 540 (545)
.
T Consensus 315 ~ 315 (342)
T 1yfq_A 315 T 315 (342)
T ss_dssp H
T ss_pred c
Confidence 8
No 52
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.2e-36 Score=302.14 Aligned_cols=261 Identities=21% Similarity=0.335 Sum_probs=231.6
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC------eEEEEeccCCccEEE
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITD 310 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~------~~~~~l~~h~~~V~~ 310 (545)
+.|..+++|+..++.. ...+..|...|.+++|+|+|.+||+|+.|+.+++|++... .....+.+|...|.+
T Consensus 83 s~Dg~v~vWd~~~~~~---~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~ 159 (354)
T 2pbi_B 83 SQDGKVIVWDSFTTNK---EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSA 159 (354)
T ss_dssp ETTSEEEEEETTTCCE---EEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEE
T ss_pred eCCCeEEEEECCCCCc---ceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEE
Confidence 3467889999877654 4556789999999999999999999999999999998643 345667789999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCC-CcEEEEEcCCCcEEEEECCCCceeeEEe-
Q 009059 311 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK- 388 (545)
Q Consensus 311 l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~ll~s~s~dg~I~lwd~~~~~~~~~~~- 388 (545)
++|+|++..|++++.|++|++||+++++. +..+.+|...|.+++|+|+. ..++++|+.||.|++||+++++++..+.
T Consensus 160 ~~~~~~~~~l~t~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~ 238 (354)
T 2pbi_B 160 CSFTNSDMQILTASGDGTCALWDVESGQL-LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET 238 (354)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred EEEeCCCCEEEEEeCCCcEEEEeCCCCeE-EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence 99999999999999999999999998775 88899999999999998853 3577799999999999999999988886
Q ss_pred ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCC--CCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC
Q 009059 389 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h--~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~ 465 (545)
+...|.+++|+|++..|++++.|+.|++||++....+..+..+ ...+.+++|+|++.+|++++ |+.|++||+.++
T Consensus 239 h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-- 316 (354)
T 2pbi_B 239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG-- 316 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--
T ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC--
Confidence 4567999999999999999999999999999998877766543 35789999999999999999 999999999877
Q ss_pred cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 466 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 466 ~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
..+..+.+|...|.+++|+|++.+|++++.|+.|++|+
T Consensus 317 -~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 317 -SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 67788889999999999999999999999999999996
No 53
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.8e-36 Score=304.35 Aligned_cols=288 Identities=17% Similarity=0.266 Sum_probs=243.8
Q ss_pred eeEEEEeecCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCC-CeEE-EEeccCCccEEEEEEcCCCCEEEEEeCC
Q 009059 252 TFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSAD 326 (545)
Q Consensus 252 ~~~~~~~l~~H~~~V~~l~~spd---g~~latg~~dg~I~lwd~~~-~~~~-~~l~~h~~~V~~l~~sp~~~~l~t~s~d 326 (545)
.+..+..+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++++|++++.|
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 34457788999999999999999 69999999999999999987 5554 7888999999999999999999999999
Q ss_pred CeEEEEECCCCCeeeeEeccCcccEEEEEE--eCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCE
Q 009059 327 RTVRVWDTENPDYSLRTFTGHSTTVMSLDF--HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 404 (545)
Q Consensus 327 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~--~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~ 404 (545)
|.|++||+.++.. ..+..|...|.+++| ++++ .++++++.||.|++||+++++++..+..+..+.++.+.+ ..
T Consensus 108 g~v~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~ 182 (368)
T 3mmy_A 108 KTAKMWDLSSNQA--IQIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--PM 182 (368)
T ss_dssp SEEEEEETTTTEE--EEEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--TE
T ss_pred CcEEEEEcCCCCc--eeeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--Ce
Confidence 9999999997663 346679999999999 7775 466699999999999999999999999888777777775 58
Q ss_pred EEEEECCCeEEEEECCCCEEEEEe--cCCCCCEEEEEEcCCCCE----EEEEe-CCcEEEEEcCCCCCcceEEEEeeCCC
Q 009059 405 ILAAAIENYISILDVETQVCRLKL--QGHKNQVHSVCWNTSGEY----LASVS-DELVRVWSIGSGSKGECIHELSCTGN 477 (545)
Q Consensus 405 l~~~~~dg~I~i~d~~~~~~~~~~--~~h~~~I~~l~~sp~g~~----l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~ 477 (545)
+++++.++.+.+|+++........ ..+...+.++++.++... +++++ |+.|++||++.......+..+..|..
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 262 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS 262 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence 899999999999999976544332 224456677777665543 77777 99999999988654345556666654
Q ss_pred ------------ceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 478 ------------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 478 ------------~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
.|.+++|+|++++|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++++|++++.|+..+.|
T Consensus 263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 7999999999999999999999999999999887 777899999999999999999999999865544
No 54
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.9e-36 Score=310.26 Aligned_cols=302 Identities=19% Similarity=0.344 Sum_probs=245.6
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEEe-------------ccC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL-------------EEH 304 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~~~~~~l-------------~~h 304 (545)
+..+++|+...+. ....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.+++....+ .+|
T Consensus 22 ~~~~~v~~~~~~~---~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
T 4a11_B 22 ESTRRVLGLELNK---DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH 98 (408)
T ss_dssp HHHHHHHTEEECT---TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC
T ss_pred cCcceeeccccCc---ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccC
Confidence 3456777765544 3466788999999999999 9999999999999999999887655443 259
Q ss_pred CccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCC--cEEEEEcCCCcEEEEECCCC
Q 009059 305 TQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNG 381 (545)
Q Consensus 305 ~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~--~ll~s~s~dg~I~lwd~~~~ 381 (545)
...|.+++|+| ++.+|++++.||.|++||+.++.. ...+. +...+.++.|.+.+. .++++++.|+.|++||++++
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 176 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG 176 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc
Confidence 99999999999 788999999999999999998664 45544 778899999998643 37779999999999999999
Q ss_pred ceeeEEe-ccCCeeEEEEeCCCCE-EEEEECCCeEEEEECCCCE-EEEEe---------------cCCCCCEEEEEEcCC
Q 009059 382 SCAGVFK-CQSGATQMRFQPRLGR-ILAAAIENYISILDVETQV-CRLKL---------------QGHKNQVHSVCWNTS 443 (545)
Q Consensus 382 ~~~~~~~-~~~~v~~l~~sp~~~~-l~~~~~dg~I~i~d~~~~~-~~~~~---------------~~h~~~I~~l~~sp~ 443 (545)
+.+..+. +...+.+++|+|++.+ +++++.||.|++||++++. .+..+ ..|...|.+++|+|+
T Consensus 177 ~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 177 SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence 8888876 4567999999999885 7889999999999998764 33444 568899999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCCCcceEEEE--eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCC
Q 009059 444 GEYLASVS-DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKL 519 (545)
Q Consensus 444 g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~--~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~ 519 (545)
+.+|++++ |+.|++||+.++......... ......+...........+++++.++.|++||+.+++.+ .+.+|...
T Consensus 257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 336 (408)
T 4a11_B 257 GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKT 336 (408)
T ss_dssp SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSC
T ss_pred CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCe
Confidence 99999999 999999999887432111100 011112222233344556888889999999999999888 77889999
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 520 VSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 520 V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|++++|+|++++|++++.||.|+|||
T Consensus 337 v~~~~~s~~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 337 VDCCVFQSNFQELYSGSRDCNILAWV 362 (408)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred EEEEEEcCCCCEEEEECCCCeEEEEe
Confidence 99999999999999999999999996
No 55
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-35 Score=305.25 Aligned_cols=277 Identities=19% Similarity=0.360 Sum_probs=239.8
Q ss_pred ecCCCCC--eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc-CCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 259 IPASTSK--VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 259 l~~H~~~--V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~-h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
..+|... +.+++|++ ..+++++.|+.|+|||+.+++....+.. |...|.+++|+|++++|++|+.||.|++||+.
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 4466655 44466664 5678888999999999999998877765 88999999999999999999999999999999
Q ss_pred CCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC-CCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 336 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 336 ~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~-~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
+++. +..+.+|...|.+++|++ .++++++.||.|++||++ ....+..+. +...+.+++|+|++..+++++.|+.
T Consensus 165 ~~~~-~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 240 (401)
T 4aez_A 165 SQTK-LRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV 240 (401)
T ss_dssp TCCE-EEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCeE-EEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe
Confidence 8765 788889999999999963 477799999999999998 455555554 5567999999999999999999999
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCC-CEEEEEe---CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCC
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 489 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g-~~l~s~s---dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~ 489 (545)
|++||++++..+..+..|...|.+++|+|++ .++++++ |+.|++||+.++ .++..+. +...+.+++|+|+++
T Consensus 241 v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~---~~~~~~~-~~~~v~~~~~s~~~~ 316 (401)
T 4aez_A 241 VQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG---ARVNTVD-AGSQVTSLIWSPHSK 316 (401)
T ss_dssp EEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC---CEEEEEE-CSSCEEEEEECSSSS
T ss_pred EEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC---CEEEEEe-CCCcEEEEEECCCCC
Confidence 9999999999999999999999999999976 5666654 899999999887 5566664 567899999999999
Q ss_pred EEEEEE--cCCeEEEEeCCCCeEE---EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 490 SLLVIG--CYETLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 490 ~l~~~~--~dg~I~iwd~~~~~~~---~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+|++++ .++.|++||+.+++.. .+.+|...|.+++|+|++++|++++.||.|+|||
T Consensus 317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377 (401)
T ss_dssp EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 999965 7999999999987655 4668999999999999999999999999999996
No 56
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-36 Score=335.92 Aligned_cols=181 Identities=13% Similarity=0.105 Sum_probs=154.6
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~ 318 (545)
|..+++|+...+... ....|...|.+++|+| |++||+++.|+.|+|||+.+++.+..+. |...|++++|+|+++
T Consensus 38 Dg~I~lw~~~~~~~~----~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~ 111 (902)
T 2oaj_A 38 TGEVHIYGQQQVEVV----IKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLD 111 (902)
T ss_dssp TSEEEEECSTTCEEE----EECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCS
T ss_pred CCEEEEEeCCCcEEE----EEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCC
Confidence 467788877655422 2235888999999999 8899999999999999999999888886 778999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCeee----------eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe
Q 009059 319 RLATSSADRTVRVWDTENPDYSL----------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 388 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~----------~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~ 388 (545)
+|++|+.||.|++||+.++.... ..+.+|.+.|.+++|+|++..++++|+.||.| +||+++++++..+.
T Consensus 112 ~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~ 190 (902)
T 2oaj_A 112 WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFI 190 (902)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEEC
T ss_pred EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEe
Confidence 99999999999999998765311 23467899999999999866778899999999 99999999888776
Q ss_pred cc-------------------CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEE
Q 009059 389 CQ-------------------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 426 (545)
Q Consensus 389 ~~-------------------~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~ 426 (545)
.+ ..|.+++|+|++.+|++++.||.|++||+++++++.
T Consensus 191 ~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 191 YELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp CCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred cccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 54 569999999999999999999999999998776543
No 57
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5e-35 Score=305.07 Aligned_cols=289 Identities=20% Similarity=0.354 Sum_probs=256.6
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
..|..+++|+..++. .+..+.+|.+.|++++|+ +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+
T Consensus 136 ~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-- 208 (445)
T 2ovr_B 136 SDDNTLKVWSAVTGK---CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH-- 208 (445)
T ss_dssp ETTSCEEEEETTTCC---EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--
T ss_pred ECCCcEEEEECCCCc---EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--
Confidence 346788999988875 456788999999999998 5699999999999999999999999999999999999995
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeE
Q 009059 317 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQ 395 (545)
Q Consensus 317 ~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~ 395 (545)
+.+|++|+.||.|++||+.+++. +..+.+|...|.++.| ++ .++++++.||.|++||+++++++..+. +...+.+
T Consensus 209 ~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 284 (445)
T 2ovr_B 209 EKRVVSGSRDATLRVWDIETGQC-LHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS 284 (445)
T ss_dssp TTEEEEEETTSEEEEEESSSCCE-EEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCcE-EEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEE
Confidence 56899999999999999998765 7888899999999999 34 456689999999999999999988886 4456889
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEee
Q 009059 396 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 474 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~ 474 (545)
+.| ++..+++++.|+.|++||+++++.+..+.+|...+.++.++ +.+|++++ |+.|++||++++ .++..+..
T Consensus 285 ~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~ 357 (445)
T 2ovr_B 285 LQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG---QCLQTLQG 357 (445)
T ss_dssp EEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECS
T ss_pred EEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCC---cEEEEEcc
Confidence 988 67899999999999999999999999999999999998874 67888888 999999999887 66777765
Q ss_pred ---CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Ee-----ccCCCCeeEEEEeCCCCEEEEEeCCCc----E
Q 009059 475 ---TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL-----SAHDKLVSSLAASTVNGMVASASHDKC----V 541 (545)
Q Consensus 475 ---~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~-----~~h~~~V~~l~~spd~~~las~s~Dg~----I 541 (545)
|...|.+++|+ +.+|++++.|+.|++||+.+++.+ .+ ..|.+.|++++|+|++.+|++|+.||+ |
T Consensus 358 ~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l 435 (445)
T 2ovr_B 358 PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKL 435 (445)
T ss_dssp TTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEE
T ss_pred CCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEE
Confidence 78889999996 578999999999999999999887 44 378899999999999999999999998 9
Q ss_pred EEcC
Q 009059 542 KIWK 545 (545)
Q Consensus 542 ~iWd 545 (545)
.|||
T Consensus 436 ~v~d 439 (445)
T 2ovr_B 436 LVLD 439 (445)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 58
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.7e-36 Score=301.25 Aligned_cols=285 Identities=18% Similarity=0.217 Sum_probs=219.0
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----eEEEEeccCCccEEEEEEcC--CCCEEEEEeCCCeEE
Q 009059 257 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVR 330 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~----~~~~~l~~h~~~V~~l~~sp--~~~~l~t~s~dg~I~ 330 (545)
..+.+|.+.|++++|+|++++||+|+.||.|+|||+.++ +....+.+|...|++++|+| ++.+|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 457899999999999999999999999999999999876 56777889999999999999 699999999999999
Q ss_pred EEECCCCC--------eeeeEeccCcccEEEEEEeCC--CCcEEEEEcCCCcEEEEECCCCceeeEEe------------
Q 009059 331 VWDTENPD--------YSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK------------ 388 (545)
Q Consensus 331 vwd~~~~~--------~~~~~~~~h~~~V~~l~~~p~--~~~ll~s~s~dg~I~lwd~~~~~~~~~~~------------ 388 (545)
+||+..+. ..+..+..|...|.+++|+|+ +. ++++++.||.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99998763 346778899999999999998 54 56688999999999999887654432
Q ss_pred --ccCCeeEEEEeCC---CCEEEEEECCCeEEEEECCCCEE--EEEecCCCCCEEEEEEcCCC----CEEEEEe-CCcEE
Q 009059 389 --CQSGATQMRFQPR---LGRILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVR 456 (545)
Q Consensus 389 --~~~~v~~l~~sp~---~~~l~~~~~dg~I~i~d~~~~~~--~~~~~~h~~~I~~l~~sp~g----~~l~s~s-dg~I~ 456 (545)
+...+.++.|+|+ +..+++++.++.+.+|+...+.. +..+.+|...|.+++|+|++ .+|++++ |+.|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 3456899999997 89999999999999998887764 77788899999999999998 7899998 99999
Q ss_pred EEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc----CCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCE
Q 009059 457 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC----YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGM 531 (545)
Q Consensus 457 vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~----dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~ 531 (545)
+||++.+.. ..........+....+.+....+..+.. ...+.+|+....+.+ .+.+|...|++++|+|++++
T Consensus 244 iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 244 IFKITEKLS---PLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp EEEEEECC------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred EEeCCCCcC---ccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence 999987532 2222222233333344444433333332 335556665555555 67789999999999999999
Q ss_pred EEEEeCCCcEEEcC
Q 009059 532 VASASHDKCVKIWK 545 (545)
Q Consensus 532 las~s~Dg~I~iWd 545 (545)
|++++.||.|+|||
T Consensus 321 l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 321 LSSAGDDGKVRLWK 334 (351)
T ss_dssp EEEEETTSCEEEEE
T ss_pred EEEecCCCcEEEEe
Confidence 99999999999996
No 59
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-35 Score=303.63 Aligned_cols=262 Identities=22% Similarity=0.369 Sum_probs=224.5
Q ss_pred cceeeeeecCCceeeEEEEeecCC------------------CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEE
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPAS------------------TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST 300 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H------------------~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~ 300 (545)
+..+++|+..++..... +..| ...|++++|+|+|++||+|+.|+.|+|||+.+++.+..
T Consensus 84 ~~~v~i~~~~~g~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~ 160 (393)
T 1erj_A 84 NKTTQVYRVSDGSLVAR---LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI 160 (393)
T ss_dssp BSCEEEEETTTCCEEEE---ECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CCcEEEEEecCCCEEEE---ecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 34677888877754332 3333 23499999999999999999999999999999999999
Q ss_pred eccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 301 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 301 l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
+.+|...|.+++|+|++.+|++++.|++|++||+.++.. ...+. +...+.+++|+|....++++|+.|+.|++||+++
T Consensus 161 ~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~ 238 (393)
T 1erj_A 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238 (393)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-EEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 999999999999999999999999999999999998764 44444 5678999999995456777999999999999999
Q ss_pred CceeeEEe--------ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCC------------EEEEEecCCCCCEEEEEE
Q 009059 381 GSCAGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQ------------VCRLKLQGHKNQVHSVCW 440 (545)
Q Consensus 381 ~~~~~~~~--------~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~------------~~~~~~~~h~~~I~~l~~ 440 (545)
+..+..+. +...+.+++|+|++..|++++.|+.|++||+++. .+...+.+|...|.+++|
T Consensus 239 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 318 (393)
T 1erj_A 239 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 318 (393)
T ss_dssp CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEE
T ss_pred CcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEE
Confidence 98877652 4457999999999999999999999999999753 345677889999999999
Q ss_pred cCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcC------CCCEEEEEEcCCeEEEEeCCCC
Q 009059 441 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP------TFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 441 sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp------~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
+|++.+|++++ |+.|++||+.++ .++..+.+|...|.+++|++ ++.+|++++.|+.|+||++...
T Consensus 319 ~~~~~~l~sgs~D~~v~iwd~~~~---~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 319 TQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCC---eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 99999999999 999999999887 67888899999999999986 6789999999999999997543
No 60
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.3e-35 Score=319.28 Aligned_cols=294 Identities=16% Similarity=0.279 Sum_probs=244.6
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEeccCCc---cEEEEEEcC
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSP 315 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~-~latg~~dg~I~lwd~~~~~~~~~l~~h~~---~V~~l~~sp 315 (545)
..+.+|+ .+. .+..+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|
T Consensus 142 ~~v~~~d--~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 216 (615)
T 1pgu_A 142 GVFISWD--SGN---SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP 216 (615)
T ss_dssp EEEEETT--TCC---EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS
T ss_pred cEEEEEE--CCC---cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC
Confidence 4556665 333 4677889999999999999998 899999999999999999999999999999 999999999
Q ss_pred C-CCEEEEEeCCCeEEEEECCCCCeeeeEe-c---cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc
Q 009059 316 S-LSRLATSSADRTVRVWDTENPDYSLRTF-T---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 390 (545)
Q Consensus 316 ~-~~~l~t~s~dg~I~vwd~~~~~~~~~~~-~---~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~ 390 (545)
+ +++|++++.||.|++||+.+++. +..+ . .|...|.+++|+ ++ .++++++.|+.|++||+++++.+..+...
T Consensus 217 ~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 217 DSGEFVITVGSDRKISCFDGKSGEF-LKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp TTCCEEEEEETTCCEEEEETTTCCE-EEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCE-eEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 9 99999999999999999998775 6666 5 899999999999 65 56668889999999999987765544432
Q ss_pred -----CC-------------------------------------------------------------------------
Q 009059 391 -----SG------------------------------------------------------------------------- 392 (545)
Q Consensus 391 -----~~------------------------------------------------------------------------- 392 (545)
..
T Consensus 294 ~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 373 (615)
T 1pgu_A 294 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSN 373 (615)
T ss_dssp TTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCS
T ss_pred CCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccC
Confidence 11
Q ss_pred -eeEEEEe----------------------------------CC------------------------------------
Q 009059 393 -ATQMRFQ----------------------------------PR------------------------------------ 401 (545)
Q Consensus 393 -v~~l~~s----------------------------------p~------------------------------------ 401 (545)
+.+++|. |+
T Consensus 374 ~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (615)
T 1pgu_A 374 LIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVS 453 (615)
T ss_dssp CEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred ceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEE
Confidence 1112220 00
Q ss_pred --CCEEEEEEC-CCeEEEEECCCCEEE-EEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEee-C
Q 009059 402 --LGRILAAAI-ENYISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-T 475 (545)
Q Consensus 402 --~~~l~~~~~-dg~I~i~d~~~~~~~-~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~-~ 475 (545)
+..+++++. |+.|++||+.++... ..+.+|...|.+++|+|++++|++++ |+.|++||+.++ ..+..+.. |
T Consensus 454 ~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~h 530 (615)
T 1pgu_A 454 LSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---EVKTSRWAFR 530 (615)
T ss_dssp ECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEECCSCCC
T ss_pred EcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC---cceeEeecCC
Confidence 334444555 666666666665444 55667899999999999999999999 999999999887 67777777 9
Q ss_pred CCceEEEEEcC----------CCCEEEEEEcCCeEEEEeCCCC-eEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 476 GNKFHSCVFHP----------TFPSLLVIGCYETLELWNMTEN-KTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 476 ~~~v~~~~~sp----------~~~~l~~~~~dg~I~iwd~~~~-~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
...|.+++|+| ++++|++++.|+.|++||+.++ +.+ .+.+|...|++++|+|+++ |++++.||.|+|
T Consensus 531 ~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~i 609 (615)
T 1pgu_A 531 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKR 609 (615)
T ss_dssp SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEE
T ss_pred CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEE
Confidence 99999999999 9999999999999999999987 555 7789999999999999999 999999999999
Q ss_pred cC
Q 009059 544 WK 545 (545)
Q Consensus 544 Wd 545 (545)
||
T Consensus 610 w~ 611 (615)
T 1pgu_A 610 WN 611 (615)
T ss_dssp EE
T ss_pred Ee
Confidence 96
No 61
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=296.97 Aligned_cols=267 Identities=23% Similarity=0.404 Sum_probs=210.0
Q ss_pred ccceeeeeecCCceeeEEEEee-cC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-------CCeEEEEeccCCccE
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLI-PA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTLEEHTQWI 308 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l-~~-H~~~V~~l~~spdg~~latg~~dg~I~lwd~~-------~~~~~~~l~~h~~~V 308 (545)
.|..+++|+...+. +..+..+ .+ |.+.|.+++|+|++++||+|+.|+.|+|||++ ..+.+..+.+|...|
T Consensus 32 ~D~~i~lw~~~~~~-~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V 110 (330)
T 2hes_X 32 TDRKIKLVSVKYDD-FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEV 110 (330)
T ss_dssp SSSCEEEEECSSSC-CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CE
T ss_pred CCCEEEEEEecCCC-eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcE
Confidence 46778888887642 2234444 44 99999999999999999999999999999984 345677889999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCC---eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC--ce
Q 009059 309 TDVRFSPSLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SC 383 (545)
Q Consensus 309 ~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~---~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~--~~ 383 (545)
.+++|+|++++|++|+.|++|++||+.... ..+..+.+|...|.+++|+|++. +|++++.|+.|++||+.++ ++
T Consensus 111 ~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~ 189 (330)
T 2hes_X 111 KGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWEC 189 (330)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeE
Confidence 999999999999999999999999995332 34677889999999999999965 6669999999999999876 56
Q ss_pred eeEEe-ccCCeeEEEEeCC--CCEEEEEECCCeEEEEECCCC--------EEEEEecC-CCCCEEEEEEcCCCCEEEEEe
Q 009059 384 AGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--------VCRLKLQG-HKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 384 ~~~~~-~~~~v~~l~~sp~--~~~l~~~~~dg~I~i~d~~~~--------~~~~~~~~-h~~~I~~l~~sp~g~~l~s~s 451 (545)
+..+. +...|.+++|+|+ +..+++++.|+.|++||++.+ .....+.. |...|.+++|++++ +|++++
T Consensus 190 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~ 268 (330)
T 2hes_X 190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVG 268 (330)
T ss_dssp EEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEE
T ss_pred EEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEe
Confidence 66665 4567999999998 568999999999999998754 44555655 89999999999776 566666
Q ss_pred -CCcEEEEEcCCCCCcceEEEEeeCCC-ceEEEEEcC--CCCEEEEEEcCCeEEEEeCCC
Q 009059 452 -DELVRVWSIGSGSKGECIHELSCTGN-KFHSCVFHP--TFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 452 -dg~I~vwd~~~~~~~~~i~~~~~~~~-~v~~~~~sp--~~~~l~~~~~dg~I~iwd~~~ 507 (545)
|+.|++||..++...........|.. .|.+++|+| ++.+|++++.|+.|+|||+++
T Consensus 269 ~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 269 ADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred CCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999999876521112222346766 899999999 688999999999999999865
No 62
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.9e-35 Score=303.78 Aligned_cols=270 Identities=22% Similarity=0.404 Sum_probs=232.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe--ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l--~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
++.|+||++ ++||+|. |++|+|||..+++....+ .+|...|++|+|+|++++|++|+.||+|+|||+.+++. +..
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~-~~~ 184 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-LRN 184 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE-EEE
Confidence 456999976 4888875 899999999999887665 46788999999999999999999999999999998765 888
Q ss_pred eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc-eeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC
Q 009059 344 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 421 (545)
Q Consensus 344 ~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~-~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~ 421 (545)
+.+|...+.++.+++ .++++|+.|+.+++||..... .+..+. +...+..+.+.+++..+++++.|+.|++||..+
T Consensus 185 ~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 185 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp ECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 999999999999874 477899999999999998644 334444 456789999999999999999999999999987
Q ss_pred CE----EEEEecCCCCCEEEEEEcCCC-CEEEEE--e-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 422 QV----CRLKLQGHKNQVHSVCWNTSG-EYLASV--S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 422 ~~----~~~~~~~h~~~I~~l~~sp~g-~~l~s~--s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
++ .+.....|...|.+++|+|.+ .+++++ + |+.|++||+.++ .++..+.. ...+.++.|++++..+++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---~~~~~~~~-~~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDA-HSQVCSILWSPHYKELIS 337 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---EEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---ccceeecc-ccceeeeeecCCCCeEEE
Confidence 64 345677899999999999976 455553 3 889999999887 66666654 567899999999999988
Q ss_pred EE--cCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 494 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 494 ~~--~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++ .|+.|+|||+.+++++ .+.+|.+.|++|+|+||+++||||+.||+|+|||
T Consensus 338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 6789999999999888 8889999999999999999999999999999997
No 63
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=9.3e-35 Score=304.42 Aligned_cols=293 Identities=16% Similarity=0.244 Sum_probs=252.4
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc--
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-- 314 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s-- 314 (545)
+.|..+++|+..++. .+..+.+|.+.|++++|++++ +|++|+.||.|++||+++++.+..+.+|...|.+++|+
T Consensus 139 s~dg~i~vwd~~~~~---~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~ 214 (464)
T 3v7d_B 139 ADDKMIRVYDSINKK---FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 214 (464)
T ss_dssp ETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEES
T ss_pred cCCCcEEEEECCCCc---EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecC
Confidence 346788999988876 456678999999999999988 99999999999999999999999999999999999998
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCee----------------------eeEeccCcccEEEEEEeCCCCcEEEEEcCCCc
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYS----------------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 372 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~----------------------~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~ 372 (545)
+++.+|++++.||.|++||+.+.... +..+.+|...|.++... + .++++++.||.
T Consensus 215 ~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~ 291 (464)
T 3v7d_B 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH--G-NIVVSGSYDNT 291 (464)
T ss_dssp SSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE--T-TEEEEEETTSC
T ss_pred CCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC--C-CEEEEEeCCCe
Confidence 57889999999999999999875432 45677899999988544 3 46669999999
Q ss_pred EEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 009059 373 IRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 373 I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s 451 (545)
|++||+.+++++..+. +...+.+++|+|++..+++++.||.|++||+++++.+..+.+|...|.+++|+ +.+|++++
T Consensus 292 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s 369 (464)
T 3v7d_B 292 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAA 369 (464)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEE
T ss_pred EEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEe
Confidence 9999999999988886 45679999999999999999999999999999999999999999999999997 57888888
Q ss_pred -CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEE--eccCCCCeeEEEEeCC
Q 009059 452 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT--LSAHDKLVSSLAASTV 528 (545)
Q Consensus 452 -dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~--~~~h~~~V~~l~~spd 528 (545)
|+.|++||+.+. ...... .+...+..++|++++.++++++ ++.|++||+.+++.+. +..|...|.+++|+ .
T Consensus 370 ~dg~v~vwd~~~~---~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~ 443 (464)
T 3v7d_B 370 ADGSIRGWDANDY---SRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-G 443 (464)
T ss_dssp TTSEEEEEETTTC---CEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-T
T ss_pred CCCcEEEEECCCC---ceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-C
Confidence 999999999876 333333 3667788899999999888888 8999999999999884 56899999999997 4
Q ss_pred CCEEEEEeCCCcEEEc
Q 009059 529 NGMVASASHDKCVKIW 544 (545)
Q Consensus 529 ~~~las~s~Dg~I~iW 544 (545)
..++++++.||.+.+|
T Consensus 444 ~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 444 KTLVAAVEKDGQSFLE 459 (464)
T ss_dssp TEEEEEEEETTEEEEE
T ss_pred CEEEEEEEeCCeEEEE
Confidence 4566666777766654
No 64
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.4e-36 Score=314.35 Aligned_cols=278 Identities=18% Similarity=0.343 Sum_probs=230.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-----------EEEEeccCC------------ccEEEEEEcCCC
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHT------------QWITDVRFSPSL 317 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~-----------~~~~l~~h~------------~~V~~l~~sp~~ 317 (545)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367899999999999999999999999999998876 577888998 889999999998
Q ss_pred --CEEEEEeCCCeEEEEECCCCCee--------------------------------------eeE-eccCcccEEEEEE
Q 009059 318 --SRLATSSADRTVRVWDTENPDYS--------------------------------------LRT-FTGHSTTVMSLDF 356 (545)
Q Consensus 318 --~~l~t~s~dg~I~vwd~~~~~~~--------------------------------------~~~-~~~h~~~V~~l~~ 356 (545)
.+|++++.|++|++||+.+.... ... ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998753321 112 3679999999999
Q ss_pred eCCCCcEEEEEcCCCcEEEEECCC-CceeeEE--------eccCCeeEEEEeCCC-CEEEEEECCCeEEEEECCCCEE--
Q 009059 357 HPSKEDLLCSCDNNSEIRYWSINN-GSCAGVF--------KCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVC-- 424 (545)
Q Consensus 357 ~p~~~~ll~s~s~dg~I~lwd~~~-~~~~~~~--------~~~~~v~~l~~sp~~-~~l~~~~~dg~I~i~d~~~~~~-- 424 (545)
+|++. ++++| .|+.|++||+++ +.....+ .+...+.+++|+|++ ..|++++.||.|++||+++++.
T Consensus 186 ~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99976 45577 699999999994 4444433 345679999999998 8999999999999999999876
Q ss_pred --EEEecCCCC------------CEEEEEEcCCCCEEEEEeCCcEEEEEcCC-CCCcceEEEEeeCCCc-----------
Q 009059 425 --RLKLQGHKN------------QVHSVCWNTSGEYLASVSDELVRVWSIGS-GSKGECIHELSCTGNK----------- 478 (545)
Q Consensus 425 --~~~~~~h~~------------~I~~l~~sp~g~~l~s~sdg~I~vwd~~~-~~~~~~i~~~~~~~~~----------- 478 (545)
+..+..|.. .|.+++|+|++++|++++++.|++||++. + .++..+..|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEN---RPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCS---SCSCCEESCGGGTTTHHHHHHTS
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCc---cccceeecccccccccccccccc
Confidence 677888876 99999999999999999899999999986 4 444555555421
Q ss_pred ----eEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccC---------------------------------CCCee
Q 009059 479 ----FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH---------------------------------DKLVS 521 (545)
Q Consensus 479 ----v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h---------------------------------~~~V~ 521 (545)
+..++|+|++++|++++.|+.|++||+.+++.+.+..| ...|.
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL 420 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence 33499999999999999999999999999988765443 35688
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEc
Q 009059 522 SLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 522 ~l~~spd~~~las~s~Dg~I~iW 544 (545)
.++|+|++.+||+++.++ +++|
T Consensus 421 ~~~~~p~~~~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTNN-LYIF 442 (447)
T ss_dssp EEEECSSSSEEEEECSSC-EEEE
T ss_pred EEEECCCCCEEEEEecce-eeee
Confidence 999999999999998887 6666
No 65
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.9e-35 Score=289.53 Aligned_cols=261 Identities=25% Similarity=0.409 Sum_probs=231.5
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.|..+++|+..++. ....+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++
T Consensus 43 ~dg~i~iw~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 119 (312)
T 4ery_A 43 ADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 119 (312)
T ss_dssp TTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS
T ss_pred CCCeEEEEeCCCcc---cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence 35678888887765 355678999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec--cCCeeE
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQ 395 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~--~~~v~~ 395 (545)
++|++++.|+.|++||+.+++. +..+..|...|.+++|+|++. ++++++.||.|++||+++++.+..+.. ...+..
T Consensus 120 ~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 197 (312)
T 4ery_A 120 NLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 197 (312)
T ss_dssp SEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEE
T ss_pred CEEEEEeCCCcEEEEECCCCEE-EEEecCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEE
Confidence 9999999999999999998764 788889999999999999975 556899999999999999988876643 346889
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEE---EEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEE
Q 009059 396 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS---VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~---l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~ 471 (545)
++|+|++.++++++.|+.|++||+++++.+..+.+|...+.+ ....+++.+|++++ |+.|++||+.++ ..+..
T Consensus 198 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~ 274 (312)
T 4ery_A 198 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQK 274 (312)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC---CEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc---hhhhh
Confidence 999999999999999999999999999999999888765432 23346788999998 999999999887 77888
Q ss_pred EeeCCCceEEEEEcCCCCEEEEEE--cCCeEEEEeCC
Q 009059 472 LSCTGNKFHSCVFHPTFPSLLVIG--CYETLELWNMT 506 (545)
Q Consensus 472 ~~~~~~~v~~~~~sp~~~~l~~~~--~dg~I~iwd~~ 506 (545)
+..|...|.+++|+|+++.|++++ .|+.|++|+.+
T Consensus 275 ~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred hhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 999999999999999999999987 58899999864
No 66
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.4e-37 Score=314.88 Aligned_cols=273 Identities=16% Similarity=0.205 Sum_probs=234.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEec
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~ 345 (545)
+++++|+|++++|++++.|+.|++||+.+++....+..| ..+....|++++++|++++.||.|++||+.++.. ...+.
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~ 136 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ-REIDQ 136 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE-EEETT
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce-eeecc
Confidence 457999999999999999999999999988877777766 4456667899999999999999999999997654 67778
Q ss_pred cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE
Q 009059 346 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 424 (545)
Q Consensus 346 ~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~ 424 (545)
+|...|.+++|+|++. +|++++.|+.|++||+.+++.+..+. +...+.+++|+|++..|++++.|+.|++||+++++.
T Consensus 137 ~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 215 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT 215 (420)
T ss_dssp SSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred cccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce
Confidence 9999999999999975 56699999999999999999888877 556799999999999999999999999999999999
Q ss_pred EEEecC---CCCCEEEEE---------------------EcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEE-eeCCCc
Q 009059 425 RLKLQG---HKNQVHSVC---------------------WNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNK 478 (545)
Q Consensus 425 ~~~~~~---h~~~I~~l~---------------------~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~-~~~~~~ 478 (545)
+..+.. |...|.+++ |+|++++|++++ |+.|++||++++ ..+..+ ..|...
T Consensus 216 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~ 292 (420)
T 3vl1_A 216 IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK---EQTIQLPSKFTCS 292 (420)
T ss_dssp EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC---CEEEEECCTTSSC
T ss_pred eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC---ceeEEcccccCCC
Confidence 988875 444555554 578999999999 999999999887 444444 347789
Q ss_pred eEEEEEcCCCC-EEEEEEcCCeEEEEeCCCCeE--EEecc-CCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 479 FHSCVFHPTFP-SLLVIGCYETLELWNMTENKT--LTLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 479 v~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~~~--~~~~~-h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|.+++|+|++. +|++++.|+.|++||+.+++. ..+.. |...|.++.| +++++|++++.||.|+|||
T Consensus 293 v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 293 CNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEe
Confidence 99999999998 999999999999999998754 35555 6778888855 5788999999999999996
No 67
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7.6e-36 Score=334.51 Aligned_cols=284 Identities=17% Similarity=0.304 Sum_probs=254.2
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
..+.+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC-ceeeEEe-ccCCeeEEEEeC-CCCEEEEEECC
Q 009059 335 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK-CQSGATQMRFQP-RLGRILAAAIE 411 (545)
Q Consensus 335 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~-~~~~~~~-~~~~v~~l~~sp-~~~~l~~~~~d 411 (545)
.++.. +..+.+|...|.+++|+|++.. +++++.||.|++||+.++ .....+. +...+.+++|+| ++..+++++.|
T Consensus 85 ~~~~~-~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 162 (814)
T 3mkq_A 85 NTGEK-VVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (814)
T ss_dssp TTCCE-EEEEECCSSCEEEEEECSSSSE-EEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred CCCcE-EEEEecCCCCEEEEEEeCCCCE-EEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence 98775 7888899999999999999765 558899999999999887 5555554 456799999999 77889999999
Q ss_pred CeEEEEECCCCEEEEEecCCC-CCEEEEEEcC--CCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCC
Q 009059 412 NYISILDVETQVCRLKLQGHK-NQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 487 (545)
Q Consensus 412 g~I~i~d~~~~~~~~~~~~h~-~~I~~l~~sp--~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~ 487 (545)
|.|++||+.++.....+..+. ..+.+++|+| ++.+|++++ |+.|++||+.++ .++..+..|...|.+++|+|+
T Consensus 163 g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~~ 239 (814)
T 3mkq_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHPT 239 (814)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSS
T ss_pred CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCC
Confidence 999999999887776666554 8999999999 999999999 999999999877 778888889999999999999
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCC--EEEEEeCCCcEEEc
Q 009059 488 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVKIW 544 (545)
Q Consensus 488 ~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~--~las~s~Dg~I~iW 544 (545)
+.+|++++.|+.|++||+.+++.. .+..|...|.+++|+|++. ++++++ |+.+.+|
T Consensus 240 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~ 298 (814)
T 3mkq_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVL 298 (814)
T ss_dssp SSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEE
Confidence 999999999999999999998877 7778899999999999987 566665 4556665
No 68
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.2e-36 Score=349.58 Aligned_cols=304 Identities=21% Similarity=0.374 Sum_probs=265.4
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcC-
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP- 315 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp- 315 (545)
+.|..+++|+..++.. +..+.+|.+.|++++|+|++++||+|+.|+.|+|||+.+++.+..+.+|...|.+++|+|
T Consensus 634 ~~d~~i~vw~~~~~~~---~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 710 (1249)
T 3sfz_A 634 GADKTLQVFKAETGEK---LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK 710 (1249)
T ss_dssp ETTSCEEEEETTTCCE---EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred eCCCeEEEEECCCCCE---EEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecC
Confidence 3567899999988864 566789999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe------
Q 009059 316 -SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------ 388 (545)
Q Consensus 316 -~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~------ 388 (545)
++.++++++.|+.|++||+.++.. +..+.+|...|.+++|+|++. ++++++.||.|++||+.+++....+.
T Consensus 711 ~~~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 788 (1249)
T 3sfz_A 711 SNHLLLATGSNDFFLKLWDLNQKEC-RNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFL 788 (1249)
T ss_dssp SSCCEEEEEETTSCEEEEETTSSSE-EEEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC-
T ss_pred CCceEEEEEeCCCeEEEEECCCcch-hheecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceeccccccc
Confidence 566899999999999999998775 788889999999999999976 55699999999999998765543321
Q ss_pred --------------------------------------------------ccCCeeEEEEeCCCCEEEEEECCCeEEEEE
Q 009059 389 --------------------------------------------------CQSGATQMRFQPRLGRILAAAIENYISILD 418 (545)
Q Consensus 389 --------------------------------------------------~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d 418 (545)
+...+.+++|+|++..+++++.++.|++||
T Consensus 789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd 868 (1249)
T 3sfz_A 789 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 868 (1249)
T ss_dssp -------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEE
T ss_pred ccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 234578899999999999999999999999
Q ss_pred CCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCc--------------------------ceEEE
Q 009059 419 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG--------------------------ECIHE 471 (545)
Q Consensus 419 ~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~--------------------------~~i~~ 471 (545)
+.++..+..+.+|...|.+++|+|++.+|++++ |+.|++||+...... ..+..
T Consensus 869 ~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1249)
T 3sfz_A 869 IDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQL 948 (1249)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEE
T ss_pred cCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEE
Confidence 999999999999999999999999999999999 999999997531000 00000
Q ss_pred --------EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 009059 472 --------LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVK 542 (545)
Q Consensus 472 --------~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~ 542 (545)
.......+.+++|+|++.++++++.+|.|++||+.+++.. .+.+|...|++++|+|++++|++++.||.|+
T Consensus 949 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~ 1028 (1249)
T 3sfz_A 949 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQ 1028 (1249)
T ss_dssp EEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEE
T ss_pred EecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 1123467899999999999999999999999999998877 6778999999999999999999999999999
Q ss_pred EcC
Q 009059 543 IWK 545 (545)
Q Consensus 543 iWd 545 (545)
+||
T Consensus 1029 vwd 1031 (1249)
T 3sfz_A 1029 VWN 1031 (1249)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
No 69
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.2e-35 Score=319.49 Aligned_cols=294 Identities=18% Similarity=0.307 Sum_probs=258.1
Q ss_pred ceeeeeecCCce-eeEEEEeecCCCCC-eEEEEEcC--CCCEEEEEeCCCcEEEEEcCCC--------eEEEEeccCCcc
Q 009059 240 RVGRSAEVGKGF-TFTEFQLIPASTSK-VESCHFSP--DGKLLATGGHDKKAVLWCTESF--------TVKSTLEEHTQW 307 (545)
Q Consensus 240 ~~~~~~~~~~~~-~~~~~~~l~~H~~~-V~~l~~sp--dg~~latg~~dg~I~lwd~~~~--------~~~~~l~~h~~~ 307 (545)
..+++|+..++. ....+..+.+|.+. |++++|+| ++++||+|+.||.|+|||+.++ +.+..+..|...
T Consensus 39 ~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (615)
T 1pgu_A 39 KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGP 118 (615)
T ss_dssp TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSC
T ss_pred CeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccccc
Confidence 467888888661 11356778999999 99999999 9999999999999999999754 677888899999
Q ss_pred EEEEEEcCCCCEEEEEeCC----CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce
Q 009059 308 ITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 308 V~~l~~sp~~~~l~t~s~d----g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~ 383 (545)
|.+++|+|++++|++++.+ +.|++||. +. .+..+.+|...|.+++|+|++..++++++.|+.|++||+.++++
T Consensus 119 v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~ 195 (615)
T 1pgu_A 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GN-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF 195 (615)
T ss_dssp EEEEEECTTSSEEEEEECCSSCSEEEEETTT--CC-EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE
T ss_pred EEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CC-cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce
Confidence 9999999999999999988 78999983 33 47888899999999999999887888999999999999999999
Q ss_pred eeEEecc-C---CeeEEEEeCC-CCEEEEEECCCeEEEEECCCCEEEEEe-c---CCCCCEEEEEEcCCCCEEEEEe-CC
Q 009059 384 AGVFKCQ-S---GATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKL-Q---GHKNQVHSVCWNTSGEYLASVS-DE 453 (545)
Q Consensus 384 ~~~~~~~-~---~v~~l~~sp~-~~~l~~~~~dg~I~i~d~~~~~~~~~~-~---~h~~~I~~l~~sp~g~~l~s~s-dg 453 (545)
+..+..+ . .+.+++|+|+ +.++++++.|+.|++||+++++.+..+ . .|...|.+++|+ ++.+|++++ |+
T Consensus 196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~ 274 (615)
T 1pgu_A 196 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA 274 (615)
T ss_dssp EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS
T ss_pred eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC
Confidence 8888744 4 6999999999 999999999999999999999999988 6 899999999999 999999999 99
Q ss_pred cEEEEEcCCCCCcceEEEEeeC----CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCC
Q 009059 454 LVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTV 528 (545)
Q Consensus 454 ~I~vwd~~~~~~~~~i~~~~~~----~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd 528 (545)
.|++||+.++ ..+..+..+ ...+.++.|. ++.++++++.++.|++||+.+++.+ .+.+|...|.+++| |+
T Consensus 275 ~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~ 349 (615)
T 1pgu_A 275 TIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP 349 (615)
T ss_dssp EEEEEETTTT---EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT
T ss_pred cEEEEECCCC---cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC
Confidence 9999999877 667777665 3667888886 8899999999999999999988777 77789999999998 77
Q ss_pred CCEEEEEeCCCcEEEcC
Q 009059 529 NGMVASASHDKCVKIWK 545 (545)
Q Consensus 529 ~~~las~s~Dg~I~iWd 545 (545)
|++++.||.|++||
T Consensus 350 ---l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 350 ---LISGSYDGRIMEWS 363 (615)
T ss_dssp ---TEEEETTSCEEETT
T ss_pred ---cEEECCCCeEEEEE
Confidence 77888888888885
No 70
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-35 Score=346.76 Aligned_cols=286 Identities=21% Similarity=0.353 Sum_probs=260.6
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
...+.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.||.|+|||+.
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeeEeccCcccEEEEEEeCCC-CcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 336 NPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 336 ~~~~~~~~~~~h~~~V~~l~~~p~~-~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
+++. +..+.+|...|.+++|+|++ ..++++++.|+.|++||+.+++++..+. +...+.+++|+|++..+++++.||.
T Consensus 688 ~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 688 TGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp TCCE-EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred CCce-EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence 8775 88899999999999999963 4577899999999999999999888775 4567999999999999999999999
Q ss_pred EEEEECCCCEEEEEecC-------------CCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEe-eCCCce
Q 009059 414 ISILDVETQVCRLKLQG-------------HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-CTGNKF 479 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~-------------h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~-~~~~~v 479 (545)
|++||++++.....+.. +...+.+++|+|+|.++++++++.+.+||+.++ ..+..+. .|...|
T Consensus 767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~v 843 (1249)
T 3sfz_A 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS---GLLAEIHTGHHSTI 843 (1249)
T ss_dssp EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC---CEEEEEECSSSSCC
T ss_pred EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC---CceeEEcCCCCCce
Confidence 99999999887766542 233788999999999999999999999999887 4444444 788999
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 480 HSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 480 ~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+++|+|++.++++++.++.|++||+.++..+ .+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 844 QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp CEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 99999999999999999999999999999887 7789999999999999999999999999999996
No 71
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.3e-36 Score=308.81 Aligned_cols=266 Identities=19% Similarity=0.328 Sum_probs=229.7
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-------EEEEeccCCccEE
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-------VKSTLEEHTQWIT 309 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~-------~~~~l~~h~~~V~ 309 (545)
+.|..+++|+..++.. ...+.+|...|.+++|+|+|++||+|+.|+.|+||++.+.. ....+.+|.+.|.
T Consensus 85 s~D~~v~iWd~~~~~~---~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~ 161 (380)
T 3iz6_a 85 SQDGRLIVWNALTSQK---THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYAS 161 (380)
T ss_dssp ETTSEEEEEETTTTEE---EEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCC
T ss_pred eCCCeEEEEECCCCcc---ceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceE
Confidence 3467899999888753 56778999999999999999999999999999999986532 3456789999999
Q ss_pred EEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeeeEe-----ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC-CCc
Q 009059 310 DVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGS 382 (545)
Q Consensus 310 ~l~~sp~-~~~l~t~s~dg~I~vwd~~~~~~~~~~~-----~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~-~~~ 382 (545)
++.|.|+ +.+|++|+.|++|++||+.++.. +..+ .+|...|.+++|++....++++|+.|+.|++||++ ..+
T Consensus 162 ~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~ 240 (380)
T 3iz6_a 162 SCQYVPDQETRLITGSGDQTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240 (380)
T ss_dssp CCBCCSSSSSCEEEECTTSCEEEECTTTCCE-EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC
T ss_pred EEEEecCCCCEEEEECCCCcEEEEEcCCCcE-EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc
Confidence 9999996 45799999999999999998775 5554 67999999999988656788899999999999998 456
Q ss_pred eeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCC-------CEEEEEEcCCCCEEEEEe-CC
Q 009059 383 CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-------QVHSVCWNTSGEYLASVS-DE 453 (545)
Q Consensus 383 ~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~-------~I~~l~~sp~g~~l~s~s-dg 453 (545)
++..+. +...|.+++|+|++.+|++++.|+.|++||++++..+..+..+.. .|.+++|+|+|++|++++ |+
T Consensus 241 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg 320 (380)
T 3iz6_a 241 AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG 320 (380)
T ss_dssp CCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS
T ss_pred ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCC
Confidence 666665 456799999999999999999999999999999998888765432 489999999999999999 99
Q ss_pred cEEEEEcCCCCCcceEEEE----eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe
Q 009059 454 LVRVWSIGSGSKGECIHEL----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 454 ~I~vwd~~~~~~~~~i~~~----~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 509 (545)
.|++||+..+ ..+..+ ..|...|.+++|+|++.+|++++.|+.|++|++...+
T Consensus 321 ~i~vwd~~~~---~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 321 DCYVWDTLLA---EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CEEEEETTTC---CEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CEEEEECCCC---ceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999876 555555 5788999999999999999999999999999997654
No 72
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=286.21 Aligned_cols=270 Identities=22% Similarity=0.389 Sum_probs=229.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe--ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l--~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
+.+|+||+++ +||+|. |++|+|||+++++.+..+ .+|...|++++|+|++++|++|+.||+|++||+++++. +..
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~-~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-LRN 104 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee-EEE
Confidence 4679999986 787765 999999999999988766 46888899999999999999999999999999998765 888
Q ss_pred eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee-eEE-eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC
Q 009059 344 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVET 421 (545)
Q Consensus 344 ~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~-~~~-~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~ 421 (545)
+.+|...+.++.+.+ .++++++.++.+++|+....... ..+ .+...+..+.+.+++..+++++.|+.|++||+++
T Consensus 105 ~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 105 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp EECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred ecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 999999999888764 47779999999999999875433 333 3456789999999999999999999999999987
Q ss_pred CE----EEEEecCCCCCEEEEEEcCCCCE-EE--EEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 422 QV----CRLKLQGHKNQVHSVCWNTSGEY-LA--SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 422 ~~----~~~~~~~h~~~I~~l~~sp~g~~-l~--s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
++ .......+...|.++.++|++.. +. +++ ++.|++||.... ... ....+...+..+.|++++..+++
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~---~~~-~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACL-SAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC---CEE-EEEECSSCEEEEEEETTTTEEEE
T ss_pred CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc---ccc-ccccceeeeeeeeecccccceEE
Confidence 64 33455668889999999997653 33 334 779999999876 333 33456788999999999998887
Q ss_pred EE--cCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 494 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 494 ~~--~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++ .|+.|++||+.+++.+ .+.+|.+.|++++|+|++++||||+.||+|+|||
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 6889999999999888 7889999999999999999999999999999997
No 73
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.7e-35 Score=306.36 Aligned_cols=271 Identities=22% Similarity=0.403 Sum_probs=241.7
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
+....+|...|+|++| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++| ++++|++|+.||.|++||+.
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 3445578888999988 7899999999999999999999999999999999999999 78899999999999999999
Q ss_pred CCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee---EE-eccCCeeEEEEeCCCCEEEEEECC
Q 009059 336 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG---VF-KCQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 336 ~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~---~~-~~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
++.. +..+.+|...|.+++|++ .++++|+.||.|++||+.++.... .+ .+...+.++.| ++..+++++.|
T Consensus 202 ~~~~-~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d 275 (435)
T 1p22_A 202 TGEM-LNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD 275 (435)
T ss_dssp SCCE-EEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred CCcE-EEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC
Confidence 8775 888899999999999974 367799999999999999877652 23 24556888888 66899999999
Q ss_pred CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE
Q 009059 412 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 412 g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~ 490 (545)
|.|++||+++++.+..+.+|...|.++.| ++.+|++++ |+.|++||++++ .++..+..|...|.+++| ++.+
T Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~--~~~~ 348 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNKR 348 (435)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEC--CSSE
T ss_pred CeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC---CEEEEEeCCcCcEEEEEe--cCCE
Confidence 99999999999999999999999999999 467899888 999999999887 788889999999999999 7888
Q ss_pred EEEEEcCCeEEEEeCCCCe---------EE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 491 LLVIGCYETLELWNMTENK---------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 491 l~~~~~dg~I~iwd~~~~~---------~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|++++.||.|++||+.++. .+ .+.+|...|.+++| ++.+|++++.||.|+|||
T Consensus 349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence 9999999999999986654 44 78899999999999 788999999999999997
No 74
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=8.5e-35 Score=325.97 Aligned_cols=300 Identities=19% Similarity=0.276 Sum_probs=263.4
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~ 318 (545)
+..+++|+..++.. +..+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+.+|...|++++|+|+++
T Consensus 34 ~g~v~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 110 (814)
T 3mkq_A 34 SGRVEIWNYETQVE---VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP 110 (814)
T ss_dssp TSEEEEEETTTTEE---EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred CCEEEEEECCCCce---EEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCC
Confidence 56789999888764 556779999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc--CCeeEE
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQM 396 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~--~~v~~l 396 (545)
+|++++.||.|++||+.++......+.+|...|.+++|+|.+..++++++.||.|++||+.++.....+... ..+.++
T Consensus 111 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~ 190 (814)
T 3mkq_A 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190 (814)
T ss_dssp EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEE
T ss_pred EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEE
Confidence 999999999999999998766678888999999999999944567779999999999999988877766543 679999
Q ss_pred EEeC--CCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe
Q 009059 397 RFQP--RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 473 (545)
Q Consensus 397 ~~sp--~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~ 473 (545)
+|+| ++..+++++.||.|++||+++++.+..+.+|...|.+++|+|++.+|++++ ||.|++||+.++ ..+..+.
T Consensus 191 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~ 267 (814)
T 3mkq_A 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTLN 267 (814)
T ss_dssp EECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---SEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEee
Confidence 9999 889999999999999999999999999999999999999999999999999 999999999887 7788888
Q ss_pred eCCCceEEEEEcCCCCE-EEEEEcCCeEEEEeCCCCe----------EEE------------------------------
Q 009059 474 CTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENK----------TLT------------------------------ 512 (545)
Q Consensus 474 ~~~~~v~~~~~sp~~~~-l~~~~~dg~I~iwd~~~~~----------~~~------------------------------ 512 (545)
.+...+.+++|+|++.. +++++.++.+.+|++.... .+.
T Consensus 268 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (814)
T 3mkq_A 268 VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSL 347 (814)
T ss_dssp CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCC
T ss_pred cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCcccee
Confidence 88999999999999874 3666778888899875432 111
Q ss_pred ----eccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 513 ----LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 513 ----~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+..+...+.+++|+|++++|++++ ||.+.||+
T Consensus 348 ~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~ 383 (814)
T 3mkq_A 348 QTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYT 383 (814)
T ss_dssp CCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred eeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEE
Confidence 123445688999999999999888 88899885
No 75
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=9e-36 Score=296.50 Aligned_cols=250 Identities=20% Similarity=0.269 Sum_probs=205.5
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe--EEEEeccCCccEEEEEEcC--CCCEEEEEeCCCeEEEE
Q 009059 257 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVW 332 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~--~~~~l~~h~~~V~~l~~sp--~~~~l~t~s~dg~I~vw 332 (545)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++ .+..+.+|...|.+++|++ ++++|++|+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3467999999999999999999999999999999998765 4678899999999999986 48999999999999999
Q ss_pred ECCCCC-eeeeEeccCcccEEEEEEeCCC-CcEEEEEcCCCcEEEEECCCCcee---eEE-eccCCeeEEEEeCC-----
Q 009059 333 DTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCA---GVF-KCQSGATQMRFQPR----- 401 (545)
Q Consensus 333 d~~~~~-~~~~~~~~h~~~V~~l~~~p~~-~~ll~s~s~dg~I~lwd~~~~~~~---~~~-~~~~~v~~l~~sp~----- 401 (545)
|++++. .....+.+|...|.+++|+|+. ..+|++|+.|+.|++||++.+... ..+ .+...+.++.|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 998764 2456788999999999999983 356779999999999999876322 222 23456889999987
Q ss_pred ------------CCEEEEEECCCeEEEEECCCC---EEEEEecCCCCCEEEEEEcCCC----CEEEEEe-CCcEEEEEcC
Q 009059 402 ------------LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIG 461 (545)
Q Consensus 402 ------------~~~l~~~~~dg~I~i~d~~~~---~~~~~~~~h~~~I~~l~~sp~g----~~l~s~s-dg~I~vwd~~ 461 (545)
+.+|++++.|+.|++||++.. ..+..+.+|...|.+++|+|++ .+|++++ |++|++|++.
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 368899999999999999755 5677889999999999999986 8899999 9999999997
Q ss_pred CCCCc-ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 462 SGSKG-ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 462 ~~~~~-~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
+.... .....+..|...|.+++|+|++.+|++++.|+.|++|+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 247 DASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp STTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 63211 1222345678899999999999999999999999999975
No 76
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.5e-35 Score=288.12 Aligned_cols=247 Identities=19% Similarity=0.358 Sum_probs=209.9
Q ss_pred EEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-eeeeEeccCcccEEEEEEeCC-CCcEEEEEcCCCcEEEE
Q 009059 299 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYW 376 (545)
Q Consensus 299 ~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~-~~~~~~~~h~~~V~~l~~~p~-~~~ll~s~s~dg~I~lw 376 (545)
..+.+|...|++++|+|++++||+|+.|++|+|||+.... ..+..+.+|.+.|.+++|++. ...+|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 4578899999999999999999999999999999997532 347889999999999999864 24677799999999999
Q ss_pred ECCCCc--eeeEEe-ccCCeeEEEEeCC--CCEEEEEECCCeEEEEECCCCE--EEEEecCCCCCEEEEEEcCC------
Q 009059 377 SINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTS------ 443 (545)
Q Consensus 377 d~~~~~--~~~~~~-~~~~v~~l~~sp~--~~~l~~~~~dg~I~i~d~~~~~--~~~~~~~h~~~I~~l~~sp~------ 443 (545)
|+++++ .+..+. +...+.+++|+|+ +..|++++.|+.|++||++++. ....+.+|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998874 334443 4567999999997 7899999999999999998753 24567789999999999997
Q ss_pred -------CCEEEEEe-CCcEEEEEcCCCCC-cceEEEEeeCCCceEEEEEcCCC---CEEEEEEcCCeEEEEeCCCCe--
Q 009059 444 -------GEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK-- 509 (545)
Q Consensus 444 -------g~~l~s~s-dg~I~vwd~~~~~~-~~~i~~~~~~~~~v~~~~~sp~~---~~l~~~~~dg~I~iwd~~~~~-- 509 (545)
+++|++++ |+.|++||++++.. ......+.+|...|.+++|+|++ .+|++++.|++|+|||+....
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 57899998 99999999987642 22566788999999999999985 789999999999999997642
Q ss_pred --EEEe--ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 510 --TLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 510 --~~~~--~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
...+ ..|...|.+++|+|++++||+++.||.|+||+
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 1233 46889999999999999999999999999995
No 77
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.4e-34 Score=297.93 Aligned_cols=273 Identities=25% Similarity=0.465 Sum_probs=242.3
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
....+.+|.+.|.. ++++++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +.+|++|+.||+|++||+
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNA 186 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEEC
Confidence 34678899987643 245568999999999999999999999999999999999999997 569999999999999999
Q ss_pred CCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCCEEEEEECCCe
Q 009059 335 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 335 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
.+++. +..+.+|...|.++.|++ ..+++|+.||.|++||+.+++++..+.. ...+.++.| ++..+++++.||.
T Consensus 187 ~~~~~-~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~ 260 (445)
T 2ovr_B 187 ETGEC-IHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFM 260 (445)
T ss_dssp TTTEE-EEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSC
T ss_pred CcCcE-EEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCE
Confidence 98764 788899999999999974 3577999999999999999998887764 456888888 6789999999999
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEE
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 492 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~ 492 (545)
|++||+++++.+..+.+|...|.+++| ++.++++++ |+.|++||++++ .++..+..|...+.++.++ +.+|+
T Consensus 261 i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~--~~~l~ 333 (445)
T 2ovr_B 261 VKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELK--DNILV 333 (445)
T ss_dssp EEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEE--TTEEE
T ss_pred EEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---CEEEEEcCCcccEEEEEEe--CCEEE
Confidence 999999999999999999999999999 788999998 999999999887 7788888899999888874 56899
Q ss_pred EEEcCCeEEEEeCCCCeEE-Eecc---CCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 493 VIGCYETLELWNMTENKTL-TLSA---HDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 493 ~~~~dg~I~iwd~~~~~~~-~~~~---h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+++.|+.|++||+.+++.+ .+.. |...|.+++|+ +++|++|+.||.|+|||
T Consensus 334 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 334 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD 388 (445)
T ss_dssp EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence 9999999999999998887 5554 88999999995 68999999999999996
No 78
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-35 Score=329.91 Aligned_cols=301 Identities=10% Similarity=0.073 Sum_probs=238.1
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE-----------EEeccCC
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-----------STLEEHT 305 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~-----------~~l~~h~ 305 (545)
..|..+++|++.++..+.. +. |.+.|++++|+|++++|++|+.||.|++||+++++.. ..+.+|.
T Consensus 76 s~D~~v~lWd~~~~~~~~~---~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~ 151 (902)
T 2oaj_A 76 NAKDTVYVLSLYSQKVLTT---VF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL 151 (902)
T ss_dssp ETTCEEEEEETTTCSEEEE---EE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC
T ss_pred ECcCeEEEEECCCCcEEEE---Ec-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC
Confidence 3578899999998865444 33 6789999999999999999999999999999988764 2346799
Q ss_pred ccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeeeEeccC------------------cccEEEEEEeCCCCcEEEE
Q 009059 306 QWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGH------------------STTVMSLDFHPSKEDLLCS 366 (545)
Q Consensus 306 ~~V~~l~~sp~-~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h------------------~~~V~~l~~~p~~~~ll~s 366 (545)
..|++++|+|+ +.+|++|+.||.| +||++++.. +..+..| ...|.+++|+|++. +|++
T Consensus 152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~las 228 (902)
T 2oaj_A 152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI-KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIIT 228 (902)
T ss_dssp CCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE-EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEE
T ss_pred CCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce-EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEE
Confidence 99999999996 5789999999999 999998654 6666555 57799999999975 5669
Q ss_pred EcCCCcEEEEECCCCceeeEEe-------------------ccCCeeEEEE-----------------------------
Q 009059 367 CDNNSEIRYWSINNGSCAGVFK-------------------CQSGATQMRF----------------------------- 398 (545)
Q Consensus 367 ~s~dg~I~lwd~~~~~~~~~~~-------------------~~~~v~~l~~----------------------------- 398 (545)
++.||.|++||+++++++.... +...|.+++|
T Consensus 229 gs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~ 308 (902)
T 2oaj_A 229 IHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMI 308 (902)
T ss_dssp EETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEE
T ss_pred EECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEE
Confidence 9999999999997765432100 0001122222
Q ss_pred --------------------------------------------------------------------------------
Q 009059 399 -------------------------------------------------------------------------------- 398 (545)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (545)
T Consensus 309 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~ 388 (902)
T 2oaj_A 309 DLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTD 388 (902)
T ss_dssp EEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEEC
T ss_pred ecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccc
Confidence
Q ss_pred -------------------------------------------------------eCCCCEEEEEECCCeEEEEECCCCE
Q 009059 399 -------------------------------------------------------QPRLGRILAAAIENYISILDVETQV 423 (545)
Q Consensus 399 -------------------------------------------------------sp~~~~l~~~~~dg~I~i~d~~~~~ 423 (545)
+|++..|++++.|++|++||+.++.
T Consensus 389 ~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~ 468 (902)
T 2oaj_A 389 KASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGD 468 (902)
T ss_dssp CGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCT
T ss_pred ccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcc
Confidence 2334456666677777777776542
Q ss_pred EE----EE--ec-----CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC--------------------------
Q 009059 424 CR----LK--LQ-----GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-------------------------- 465 (545)
Q Consensus 424 ~~----~~--~~-----~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~-------------------------- 465 (545)
.. .. +. +|...|.+++|+|++++||+|+ |++|+|||+.+++.
T Consensus 469 ~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (902)
T 2oaj_A 469 IQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNG 548 (902)
T ss_dssp TTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSC
T ss_pred ccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcc
Confidence 10 11 11 6888999999999999999999 99999999976521
Q ss_pred ----------------cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEE------e-ccCCCCeeE
Q 009059 466 ----------------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT------L-SAHDKLVSS 522 (545)
Q Consensus 466 ----------------~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~------~-~~h~~~V~~ 522 (545)
..++..+..|...|++++|+|+| +|++|+.|++|+|||+++...+. + .+|...|++
T Consensus 549 ~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~s 627 (902)
T 2oaj_A 549 VLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTC 627 (902)
T ss_dssp SEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEE
T ss_pred ccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEE
Confidence 13467788899999999999999 99999999999999998887652 2 278999999
Q ss_pred EEEe-----CCC---CEEEEEeCCCcEEEcC
Q 009059 523 LAAS-----TVN---GMVASASHDKCVKIWK 545 (545)
Q Consensus 523 l~~s-----pd~---~~las~s~Dg~I~iWd 545 (545)
|+|+ ||| .+|++|+.|++|++||
T Consensus 628 v~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 628 IEFVIMEYGDDGYSSILMVCGTDMGEVITYK 658 (902)
T ss_dssp EEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred EEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence 9999 886 7999999999999996
No 79
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.2e-35 Score=294.93 Aligned_cols=270 Identities=16% Similarity=0.247 Sum_probs=229.4
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCCCe-EEEEeccCCccEEEEEE
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRF 313 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spd---g~~latg~~dg~I~lwd~~~~~-~~~~l~~h~~~V~~l~~ 313 (545)
.|..+++|+..++..... ...+|...|++++|+|+ +++|++|+.||.|++||+.+++ .+..+.+|...|.+++|
T Consensus 42 ~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 119 (357)
T 3i2n_A 42 GTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDG 119 (357)
T ss_dssp CCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEE
T ss_pred CCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEee
Confidence 367899999988754322 22378999999999998 6999999999999999999888 88899999999999955
Q ss_pred ------cCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcc----cEEEEE----EeCCCCcEEEEEcCCCcEEEEECC
Q 009059 314 ------SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST----TVMSLD----FHPSKEDLLCSCDNNSEIRYWSIN 379 (545)
Q Consensus 314 ------sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~----~V~~l~----~~p~~~~ll~s~s~dg~I~lwd~~ 379 (545)
+|++++|++++.||.|++||+.++...+..+..|.+ .|.+++ |+|++. ++++++.||.|++||++
T Consensus 120 ~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~ 198 (357)
T 3i2n_A 120 IGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLR 198 (357)
T ss_dssp ESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETT
T ss_pred ccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECc
Confidence 678999999999999999999987755777766554 899998 677764 56688999999999999
Q ss_pred CCceeeEEeccCCeeEEEEeC---CCCEEEEEECCCeEEEEECCCCEEEEEe-----cCCCCCEEEEEEcCCCC-EEEEE
Q 009059 380 NGSCAGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKL-----QGHKNQVHSVCWNTSGE-YLASV 450 (545)
Q Consensus 380 ~~~~~~~~~~~~~v~~l~~sp---~~~~l~~~~~dg~I~i~d~~~~~~~~~~-----~~h~~~I~~l~~sp~g~-~l~s~ 450 (545)
+++......+...+.+++|+| ++..+++++.||.|++||+++++....+ .+|...|.+++|+|++. +|+++
T Consensus 199 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 278 (357)
T 3i2n_A 199 NMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTA 278 (357)
T ss_dssp TTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred cCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEE
Confidence 999888888888999999999 8999999999999999999876544333 48999999999999998 78888
Q ss_pred e-CCcEEEEEcCCCCCc----------------ceEEEEeeCCCceEEEEEcCCCCEEE-EEEcCCeEEEEeCCCCeE
Q 009059 451 S-DELVRVWSIGSGSKG----------------ECIHELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMTENKT 510 (545)
Q Consensus 451 s-dg~I~vwd~~~~~~~----------------~~i~~~~~~~~~v~~~~~sp~~~~l~-~~~~dg~I~iwd~~~~~~ 510 (545)
+ |+.|++||++.+... ..+..+..|...|.+++|+|++++|+ +++.|+.|++||+.+.+.
T Consensus 279 ~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 279 GGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp ETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred eCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 8 999999999875433 46788889999999999999999998 799999999999987653
No 80
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.3e-33 Score=282.27 Aligned_cols=269 Identities=16% Similarity=0.254 Sum_probs=235.1
Q ss_pred cccceeeeeecCCce--eeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 237 PRDRVGRSAEVGKGF--TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~--~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
+.|..+++|++.++. .......+.+|...|.+++|+|++++|++|+.|+.|++|+............+...+..+.++
T Consensus 58 s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (340)
T 4aow_A 58 SRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS 137 (340)
T ss_dssp ETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred cCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEe
Confidence 346788899887653 234567899999999999999999999999999999999999999998888999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCC-cEEEEEcCCCcEEEEECCCCceeeEEe-ccCC
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFK-CQSG 392 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~ 392 (545)
+++.+|++++.|+.+++||+...........+|...+..++|++++. .++++++.|+.|++||+++++++..+. +...
T Consensus 138 ~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~ 217 (340)
T 4aow_A 138 SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 217 (340)
T ss_dssp TTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred ecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCc
Confidence 99999999999999999999876665666778999999999998754 467789999999999999999888776 4567
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEE-
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE- 471 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~- 471 (545)
|.+++|+|++.+|++++.|+.|++||+++.+.+..+.. ...|.+++|+|++.+++++.|+.|++||+++. ..+..
T Consensus 218 v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~---~~~~~~ 293 (340)
T 4aow_A 218 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAATGPSIKIWDLEGK---IIVDEL 293 (340)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTT---EEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCceeeccCCCEEEEEECCCC---eEEEec
Confidence 99999999999999999999999999999999988874 56899999999999888888999999999876 33333
Q ss_pred --------EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe
Q 009059 472 --------LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 472 --------~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 509 (545)
...|...|.+++|+|++++|++++.|+.|+|||+++|.
T Consensus 294 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 294 KQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred cccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 34678899999999999999999999999999998875
No 81
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.5e-34 Score=293.20 Aligned_cols=268 Identities=17% Similarity=0.241 Sum_probs=230.7
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
+.+..+++|+..++.....+. ..|...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++| +
T Consensus 110 ~~d~~v~lw~~~~~~~~~~~~--~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~ 185 (401)
T 4aez_A 110 ALERNVYVWNADSGSVSALAE--TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--N 185 (401)
T ss_dssp EETTEEEEEETTTCCEEEEEE--CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--E
T ss_pred ECCCeEEEeeCCCCcEeEeee--cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--C
Confidence 346789999998886543322 238999999999999999999999999999999999999999999999999999 4
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeE
Q 009059 317 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQ 395 (545)
Q Consensus 317 ~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~ 395 (545)
+.+|++++.||.|++||+......+..+.+|...|.+++|+|++. ++++++.|+.|++||+++++.+..+. +...+.+
T Consensus 186 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 264 (401)
T 4aez_A 186 RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA 264 (401)
T ss_dssp TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCSSEEEEECCCSSCCCE
T ss_pred CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEccCCCCCccEEecCCcceEEE
Confidence 679999999999999999966666888999999999999999865 56689999999999999998887775 5567999
Q ss_pred EEEeCCCCEEEEEE---CCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEE--Ee-CCcEEEEEcCCCCCcceE
Q 009059 396 MRFQPRLGRILAAA---IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS--VS-DELVRVWSIGSGSKGECI 469 (545)
Q Consensus 396 l~~sp~~~~l~~~~---~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s--~s-dg~I~vwd~~~~~~~~~i 469 (545)
++|+|++..+++.+ .|+.|++||+++++.+..+. +...|.+++|+|++.+|++ |. |+.|++||+.++.. ...
T Consensus 265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-~~~ 342 (401)
T 4aez_A 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL-TKQ 342 (401)
T ss_dssp EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE-EEE
T ss_pred EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc-eeE
Confidence 99999877666654 59999999999999988886 6788999999999999998 43 89999999987532 344
Q ss_pred EEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 470 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 470 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
..+..|...|.+++|+|++.+|++++.|+.|++||+.+++.+
T Consensus 343 ~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 343 VDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred EEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 457789999999999999999999999999999999998876
No 82
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1e-34 Score=297.20 Aligned_cols=266 Identities=17% Similarity=0.135 Sum_probs=233.6
Q ss_pred ccceeeeeecCCce---eeEEEEeecCCCCCeEEEEEcCC----C---CEEEEEeCCCcEEEEEcCCCeE-----EEEec
Q 009059 238 RDRVGRSAEVGKGF---TFTEFQLIPASTSKVESCHFSPD----G---KLLATGGHDKKAVLWCTESFTV-----KSTLE 302 (545)
Q Consensus 238 ~d~~~~~~~~~~~~---~~~~~~~l~~H~~~V~~l~~spd----g---~~latg~~dg~I~lwd~~~~~~-----~~~l~ 302 (545)
.|..+++|+...+. .+..+..+.+|...|++++|+|+ + ++|++++.|+.|++||+.+++. ...+.
T Consensus 34 ~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 113 (397)
T 1sq9_A 34 GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD 113 (397)
T ss_dssp TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC
T ss_pred CCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec
Confidence 35678888877664 22345667799999999999999 9 9999999999999999998876 88888
Q ss_pred cC-----CccEEEEEEc----CCCCE-EEEEeCCCeEEEEECCC------CCeeee-----Ee-------ccCcccEEEE
Q 009059 303 EH-----TQWITDVRFS----PSLSR-LATSSADRTVRVWDTEN------PDYSLR-----TF-------TGHSTTVMSL 354 (545)
Q Consensus 303 ~h-----~~~V~~l~~s----p~~~~-l~t~s~dg~I~vwd~~~------~~~~~~-----~~-------~~h~~~V~~l 354 (545)
.| ...|.+++|+ |++++ |++++.||.|++||+.+ ... +. .+ ..|...|.++
T Consensus 114 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~ 192 (397)
T 1sq9_A 114 LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT-LNWSPTLELQGTVESPMTPSQFATSV 192 (397)
T ss_dssp CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT-TCCCCEEEEEEEECCSSSSCCCCCEE
T ss_pred ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce-eeccCcceeeeeeccccCCCCCceEE
Confidence 88 5999999999 99999 99999999999999987 443 33 55 4488999999
Q ss_pred EEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-------cCCeeEEEEeCCCCEEEEEECC---CeEEEEECCCCEE
Q 009059 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILAAAIE---NYISILDVETQVC 424 (545)
Q Consensus 355 ~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-------~~~v~~l~~sp~~~~l~~~~~d---g~I~i~d~~~~~~ 424 (545)
+|+|++ ++++++.||.|++||+++++.+..+.. ...+.+++|+|++.+|++++.| +.|++||+++++.
T Consensus 193 ~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~ 270 (397)
T 1sq9_A 193 DISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER 270 (397)
T ss_dssp EECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred EECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc
Confidence 999997 777999999999999999999988886 6789999999999999999999 9999999999999
Q ss_pred EEEecC-------------CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe------eC---------
Q 009059 425 RLKLQG-------------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS------CT--------- 475 (545)
Q Consensus 425 ~~~~~~-------------h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~------~~--------- 475 (545)
+..+.. |...|.+++|+|++++|++++ |+.|++||+.++ .++..+. .|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~g~~ 347 (397)
T 1sq9_A 271 IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERITTLNMHCDDIEIEEDILAVDE 347 (397)
T ss_dssp EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCGGGCSSGGGCCCBCT
T ss_pred cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceeEEEecccCcccchhhhhcccc
Confidence 999998 999999999999999999999 999999999887 7788888 77
Q ss_pred ------CCceEEEEEcCCC----------CEEEEEEcCCeEEEEeCCCCe
Q 009059 476 ------GNKFHSCVFHPTF----------PSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 476 ------~~~v~~~~~sp~~----------~~l~~~~~dg~I~iwd~~~~~ 509 (545)
...|.+++|+|++ ++|++++.|+.|++||+.+++
T Consensus 348 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 348 HGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 8999999999998 799999999999999998763
No 83
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.6e-34 Score=314.20 Aligned_cols=267 Identities=16% Similarity=0.266 Sum_probs=228.9
Q ss_pred CcccceeeeeecCCcee--eEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEE
Q 009059 236 DPRDRVGRSAEVGKGFT--FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 313 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~--~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~ 313 (545)
.+.|..+++|+..+... -.....+.+|...|.+++|+|++++|++|+.|+.|+|||+.+++.+..+.+|...|.+++|
T Consensus 401 ~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~ 480 (694)
T 3dm0_A 401 ASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAF 480 (694)
T ss_dssp EETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred EeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEE
Confidence 45678899998875422 2345678999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeeE---eccCcccEEEEEEeCCCC-cEEEEEcCCCcEEEEECCCCceeeEEe-
Q 009059 314 SPSLSRLATSSADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFK- 388 (545)
Q Consensus 314 sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~---~~~h~~~V~~l~~~p~~~-~ll~s~s~dg~I~lwd~~~~~~~~~~~- 388 (545)
+|++++|++|+.|++|++||+..... ... ..+|...|.+++|+|++. .++++++.|+.|++||++++++...+.
T Consensus 481 s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~ 559 (694)
T 3dm0_A 481 SLDNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG 559 (694)
T ss_dssp CTTSSCEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred eCCCCEEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 99999999999999999999865432 222 246889999999999863 477799999999999999998888776
Q ss_pred ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcce
Q 009059 389 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC 468 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~ 468 (545)
+...|.+++|+|++.+|++++.||.|++||+++++.+..+. +...|.+++|+|++.+|+++.++.|+|||+.++ ..
T Consensus 560 h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~---~~ 635 (694)
T 3dm0_A 560 HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAATEHGIKIWDLESK---SI 635 (694)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTT---EE
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCC---CC
Confidence 45679999999999999999999999999999999888776 456899999999999999988889999999886 44
Q ss_pred EEEEeeC-------------------CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 469 IHELSCT-------------------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 469 i~~~~~~-------------------~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
+..+..+ ...+.+++|+|++++|++++.||.|+|||+..
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 636 VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred hhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 4444321 12378899999999999999999999999853
No 84
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=8.6e-35 Score=293.47 Aligned_cols=263 Identities=17% Similarity=0.241 Sum_probs=229.3
Q ss_pred ceeeeeecCCceeeEEEEeecC--CCCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEE
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPA--STSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 313 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~--H~~~V~~l~~spd----g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~ 313 (545)
..+++|+..++.....+..+.. |...|++++|+|+ +++|++|+.||.|++||+.+++.+..+.+|...|.+++|
T Consensus 44 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 123 (366)
T 3k26_A 44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 123 (366)
T ss_dssp TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEE
T ss_pred CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEE
Confidence 4689999988877666665543 8899999999999 679999999999999999999999999999999999999
Q ss_pred cC-CCCEEEEEeCCCeEEEEECCCCCeeeeEe---ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-
Q 009059 314 SP-SLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK- 388 (545)
Q Consensus 314 sp-~~~~l~t~s~dg~I~vwd~~~~~~~~~~~---~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~- 388 (545)
+| ++.+|++++.||.|++||+.+++. +..+ .+|...|.+++|+|++. ++++++.||.|++||+++++....+.
T Consensus 124 ~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~ 201 (366)
T 3k26_A 124 HPRDPNLLLSVSKDHALRLWNIQTDTL-VAIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKE 201 (366)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTTTEE-EEEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHH
T ss_pred CCCCCCEEEEEeCCCeEEEEEeecCeE-EEEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccce
Confidence 99 899999999999999999998764 6666 68999999999999875 55588889999999999876554332
Q ss_pred ----------------------------ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCC--------------EEEE
Q 009059 389 ----------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQ--------------VCRL 426 (545)
Q Consensus 389 ----------------------------~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~--------------~~~~ 426 (545)
+...+.+++|+ +..+++++.|+.|++||++++ ..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 279 (366)
T 3k26_A 202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG 279 (366)
T ss_dssp HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE
T ss_pred eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec
Confidence 55679999999 579999999999999999876 3477
Q ss_pred EecCCCCCEEEEEEcCC--CCEEEEEe-CCcEEEEEcCCCCCcc-eEEEEeeC--CCceEEEEEcCCCCEEEEEEcCCeE
Q 009059 427 KLQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKGE-CIHELSCT--GNKFHSCVFHPTFPSLLVIGCYETL 500 (545)
Q Consensus 427 ~~~~h~~~I~~l~~sp~--g~~l~s~s-dg~I~vwd~~~~~~~~-~i~~~~~~--~~~v~~~~~sp~~~~l~~~~~dg~I 500 (545)
.+..|...|.+++|+|+ +.+|++++ |+.|++||+.++.... ....+..| ...|.+++|+|++++|++++.|+.|
T Consensus 280 ~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 359 (366)
T 3k26_A 280 RFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASI 359 (366)
T ss_dssp EEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEE
Confidence 88889999999999999 99999999 9999999999875433 55567777 6899999999999999999999999
Q ss_pred EEEeCC
Q 009059 501 ELWNMT 506 (545)
Q Consensus 501 ~iwd~~ 506 (545)
++||+.
T Consensus 360 ~iwd~~ 365 (366)
T 3k26_A 360 WRWDRL 365 (366)
T ss_dssp EEEEC-
T ss_pred EEEEec
Confidence 999985
No 85
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.5e-33 Score=290.21 Aligned_cols=266 Identities=19% Similarity=0.286 Sum_probs=231.0
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.|..+++|+..+|.... +..+.+|...|+||+|+|+|++||+|+.||.|+|||+++++.+..+.+|...|.++.|+ +
T Consensus 123 ld~tV~lWd~~tg~~~~-~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~ 199 (420)
T 4gga_A 123 LDNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--S 199 (420)
T ss_dssp ETTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--T
T ss_pred eCCEEEEEECCCCCEEE-EEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--C
Confidence 46789999999986543 33466889999999999999999999999999999999999999999999999998885 6
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee----e-EEeccCC
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----G-VFKCQSG 392 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~----~-~~~~~~~ 392 (545)
.+|++|+.|+.+++||.......+..+.+|...+..+.|+|++. ++++++.|+.|++|++.+++.. . ...+...
T Consensus 200 ~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~ 278 (420)
T 4gga_A 200 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA 278 (420)
T ss_dssp TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSC
T ss_pred CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eeeeeeccccceEEeeccccccceeeeeecccCCc
Confidence 79999999999999999987777888999999999999999975 5558999999999999876532 2 2235567
Q ss_pred eeEEEEeCCCCEEEE-E--ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe---CCcEEEEEcCCCCCc
Q 009059 393 ATQMRFQPRLGRILA-A--AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKG 466 (545)
Q Consensus 393 v~~l~~sp~~~~l~~-~--~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s---dg~I~vwd~~~~~~~ 466 (545)
|.+++|+|.+..+++ + +.|+.|++||+.++.+...+.. ...+.++.|++++..+++++ |+.|+|||+.++
T Consensus 279 V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~--- 354 (420)
T 4gga_A 279 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM--- 354 (420)
T ss_dssp EEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---
T ss_pred eeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC---
Confidence 999999997665543 3 3589999999999999988875 46789999999999888764 789999999887
Q ss_pred ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 467 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 467 ~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
.++.++.+|...|.+++|+|++.+|++++.|++|+|||+.+....
T Consensus 355 ~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 355 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 788999999999999999999999999999999999999776544
No 86
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-34 Score=289.99 Aligned_cols=253 Identities=21% Similarity=0.298 Sum_probs=217.1
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCeEEEEeccCCccEEEEEEcCC--CCEEEEEeCCCeEE
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVR 330 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~--~~~~~~~l~~h~~~V~~l~~sp~--~~~l~t~s~dg~I~ 330 (545)
.+..+.+|.+.|++++|+|++++||+|+.||.|+|||+. +++.+..+.+|...|++++|+++ +.+|++++.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 356788999999999999999999999999999999998 66777889999999999999987 89999999999999
Q ss_pred EEECCCCCe-eeeEeccCcccEEEEEEeCCC-CcEEEEEcCCCcEEEEECCCCceeeE---EeccCCeeEEEEeC-----
Q 009059 331 VWDTENPDY-SLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGV---FKCQSGATQMRFQP----- 400 (545)
Q Consensus 331 vwd~~~~~~-~~~~~~~h~~~V~~l~~~p~~-~~ll~s~s~dg~I~lwd~~~~~~~~~---~~~~~~v~~l~~sp----- 400 (545)
+||+.++.. .+..+..|...|.+++|+|+. ..++++++.|+.|++||+++...... ..+...+.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 999998752 467778899999999999982 34666899999999999998743332 24556799999999
Q ss_pred --------CCCEEEEEECCCeEEEEECCCC----EEEEEecCCCCCEEEEEEcCC---CCEEEEEe-CCcEEEEEcCCCC
Q 009059 401 --------RLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGS 464 (545)
Q Consensus 401 --------~~~~l~~~~~dg~I~i~d~~~~----~~~~~~~~h~~~I~~l~~sp~---g~~l~s~s-dg~I~vwd~~~~~ 464 (545)
++..+++++.|+.|++||++++ .....+.+|...|.+++|+|+ +.+|++++ |+.|++||+.++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 6899999999999999999765 355678889999999999999 89999999 9999999998864
Q ss_pred CcceEEEEe--eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 465 KGECIHELS--CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 465 ~~~~i~~~~--~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
.......+. .+...|.+++|+|++++|++++.|+.|++||+..
T Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 243 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred ccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 322333333 3778899999999999999999999999999873
No 87
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.5e-35 Score=292.29 Aligned_cols=246 Identities=19% Similarity=0.325 Sum_probs=204.1
Q ss_pred EeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eeeEeccCcccEEEEEEeCC-CCcEEEEEcCCCcEEEEE
Q 009059 300 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWS 377 (545)
Q Consensus 300 ~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~-~~~~~~~h~~~V~~l~~~p~-~~~ll~s~s~dg~I~lwd 377 (545)
.+.+|.+.|++++|+|++++|++|+.|++|+|||+.++.. .+..+.+|...|.+++|++. ...+|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 4568999999999999999999999999999999987643 46788999999999999763 235677999999999999
Q ss_pred CCCCc--eeeEEe-ccCCeeEEEEeCC--CCEEEEEECCCeEEEEECCCCE---EEEEecCCCCCEEEEEEcCC------
Q 009059 378 INNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQV---CRLKLQGHKNQVHSVCWNTS------ 443 (545)
Q Consensus 378 ~~~~~--~~~~~~-~~~~v~~l~~sp~--~~~l~~~~~dg~I~i~d~~~~~---~~~~~~~h~~~I~~l~~sp~------ 443 (545)
++++. ....+. +...|.+++|+|+ +..|++++.|+.|++||++.+. ....+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 99874 344443 4567999999997 6789999999999999998753 23456779999999999997
Q ss_pred -----------CCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC----CEEEEEEcCCeEEEEeCCC
Q 009059 444 -----------GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 444 -----------g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~----~~l~~~~~dg~I~iwd~~~ 507 (545)
+++|++++ |+.|++||++......++..+..|...|.+++|+|++ .+|++++.|++|++||+.+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 46889888 9999999997554335677788999999999999986 7899999999999999976
Q ss_pred C---e--EEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 508 N---K--TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 508 ~---~--~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
. . ...+..|...|.+++|+|++++||+++.||.|+||+
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 2 1 124567899999999999999999999999999996
No 88
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2e-34 Score=296.43 Aligned_cols=277 Identities=15% Similarity=0.234 Sum_probs=234.2
Q ss_pred eEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCe----EEEEeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCC-
Q 009059 266 VESCHFSPDGKLL-ATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD- 338 (545)
Q Consensus 266 V~~l~~spdg~~l-atg~~dg~I~lwd~~~~~----~~~~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~- 338 (545)
...++++|+...+ ++++.||.|+||++.... .+..+.+|...|++++|+| ++.+|++|+.||.|+|||+.++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 4458888876544 457889999999986542 3445778999999999999 99999999999999999998763
Q ss_pred -----eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE--e-ccCCeeEEEEeCCCCEEEEEEC
Q 009059 339 -----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--K-CQSGATQMRFQPRLGRILAAAI 410 (545)
Q Consensus 339 -----~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~--~-~~~~v~~l~~sp~~~~l~~~~~ 410 (545)
..+..+.+|...|.+++|+|++..++++++.||.|++||+.+++++..+ . +...+.+++|+|++..|++++.
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence 3467888999999999999998778889999999999999999998888 3 5567999999999999999999
Q ss_pred CCeEEEEECCCCEEEEEe-cCCCCC-EEEEEEcCCCCEEEEE---e-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEE
Q 009059 411 ENYISILDVETQVCRLKL-QGHKNQ-VHSVCWNTSGEYLASV---S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 484 (545)
Q Consensus 411 dg~I~i~d~~~~~~~~~~-~~h~~~-I~~l~~sp~g~~l~s~---s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~ 484 (545)
|+.|++||+++++.+..+ ..|.+. +.+++|+|++.+|+++ + |+.|++||+++......... ..+...+.+++|
T Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~ 275 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE-LDTSSGVLLPFF 275 (402)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE-CCCCSSCEEEEE
T ss_pred CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe-ccCCCceeEEEE
Confidence 999999999999999888 778776 8999999999999999 5 88999999988654222322 246678999999
Q ss_pred cCCCCEEEEEE-cCCeEEEEeCCCCe--EEEec--cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 485 HPTFPSLLVIG-CYETLELWNMTENK--TLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 485 sp~~~~l~~~~-~dg~I~iwd~~~~~--~~~~~--~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+|++.+|++++ .|+.|++||+.+++ ...+. .|...|.+++|+|++.++++ .|+.+++|+
T Consensus 276 s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 276 DPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp ETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence 99999997665 69999999999887 33333 36699999999999988775 567899995
No 89
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-32 Score=276.87 Aligned_cols=263 Identities=14% Similarity=0.157 Sum_probs=233.1
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.|..+++|+..++. .+..+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++.+..+. |...|.+++|+|++
T Consensus 52 ~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 127 (369)
T 3zwl_B 52 KDSSASVWYSLNGE---RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCG 127 (369)
T ss_dssp SSSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTS
T ss_pred CCCEEEEEeCCCch---hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCC
Confidence 35678899888775 456788999999999999999999999999999999999999998887 88999999999999
Q ss_pred CEEEEEeCC-----CeEEEEECCCCCe----------eeeEeccCcc--cEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 318 SRLATSSAD-----RTVRVWDTENPDY----------SLRTFTGHST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 318 ~~l~t~s~d-----g~I~vwd~~~~~~----------~~~~~~~h~~--~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
++|++++.+ +.|++||+..... ....+..|.. .+.+++|+|++. ++++++.||.|++||+++
T Consensus 128 ~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 128 NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTT
T ss_pred CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCC
Confidence 999999999 9999999976542 2344555666 899999999976 555888999999999998
Q ss_pred -CceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CC----
Q 009059 381 -GSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE---- 453 (545)
Q Consensus 381 -~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg---- 453 (545)
.+.+..+. +...+.+++|+|++.+|++++.|+.|++||+++++.+..+. +...+.+++|+|++.++++++ ++
T Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (369)
T 3zwl_B 207 NYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDV 285 (369)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC----
T ss_pred CcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceE
Confidence 67777776 45679999999999999999999999999999999888887 788999999999999999998 66
Q ss_pred ----------cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe
Q 009059 454 ----------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 454 ----------~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 509 (545)
.+++||+.++ ..+..+..|...|.+++|+|++++|++++.|+.|++|+++.+.
T Consensus 286 ~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 286 TTTSANEGKFEARFYHKIFE---EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp ---------CEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred EEEecCCCcceeEEEecCCC---cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 7999999887 7788888999999999999999999999999999999997654
No 90
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1e-32 Score=285.96 Aligned_cols=297 Identities=10% Similarity=0.068 Sum_probs=249.2
Q ss_pred eeeeecCC-ceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEE-----EeccCCccEEEEEEcC
Q 009059 242 GRSAEVGK-GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSP 315 (545)
Q Consensus 242 ~~~~~~~~-~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~-----~l~~h~~~V~~l~~sp 315 (545)
.++|.+.. +..+..+..+..+. .+.+++|+|++.++++++.++.|++||+.+++... .+.+|...|.+++|++
T Consensus 101 ~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (433)
T 3bws_A 101 EKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE 179 (433)
T ss_dssp TCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG
T ss_pred eEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC
Confidence 34554433 12344555565554 46699999988888888889999999999998887 4457899999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeE
Q 009059 316 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ 395 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~ 395 (545)
++.++++++.|+.|++||+.+++. +..+..|...+.+++|+|++..++++++.|+.|++||+++++.+..+.....+.+
T Consensus 180 ~~~~~~s~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 258 (433)
T 3bws_A 180 HNELWVSQMQANAVHVFDLKTLAY-KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRG 258 (433)
T ss_dssp GTEEEEEEGGGTEEEEEETTTCCE-EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCceE-EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceE
Confidence 999999999999999999998764 6777789999999999999988888888899999999999999888887778999
Q ss_pred EEEeCCCCEEEEEE--------CCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEE-e-CCcEEEEEcCCCCC
Q 009059 396 MRFQPRLGRILAAA--------IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSK 465 (545)
Q Consensus 396 l~~sp~~~~l~~~~--------~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~-s-dg~I~vwd~~~~~~ 465 (545)
++|+|+++.+++++ .|+.|++||+++++.+..+. |...+.+++|+|+++++++. + ++.|++||+.++
T Consensus 259 ~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-- 335 (433)
T 3bws_A 259 LLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-- 335 (433)
T ss_dssp EEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT--
T ss_pred EEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC--
Confidence 99999999999888 48899999999998777663 56689999999999866544 5 889999999876
Q ss_pred cceEEEEeeCCCceEEEEEcCCCCEEEEEEc---------------CCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCC
Q 009059 466 GECIHELSCTGNKFHSCVFHPTFPSLLVIGC---------------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG 530 (545)
Q Consensus 466 ~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~---------------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~ 530 (545)
..+..+. +...+.+++|+|++++|++++. ||.|++||+.+++.+....+...+.+++|+|+++
T Consensus 336 -~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 413 (433)
T 3bws_A 336 -KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNR 413 (433)
T ss_dssp -EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSC
T ss_pred -cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCC
Confidence 5555554 6778999999999999998887 4699999999999885555567899999999999
Q ss_pred EEEEEeC-CCcEEEcC
Q 009059 531 MVASASH-DKCVKIWK 545 (545)
Q Consensus 531 ~las~s~-Dg~I~iWd 545 (545)
+|++++. |+.|+||+
T Consensus 414 ~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 414 YLVISDFLDHQIRVYR 429 (433)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCeEEEEE
Confidence 9998875 99999996
No 91
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.3e-33 Score=281.37 Aligned_cols=269 Identities=17% Similarity=0.226 Sum_probs=227.8
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEE--eccCCccEEEEEEcCC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPS 316 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~--l~~h~~~V~~l~~sp~ 316 (545)
+..+++|+..++. +..+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.... +..|...|.+++|+|+
T Consensus 29 d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 107 (372)
T 1k8k_C 29 NHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN 107 (372)
T ss_dssp SSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT
T ss_pred CCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC
Confidence 5678899887764 446778889999999999999999999999999999999998875543 4679999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCe---eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC--------------
Q 009059 317 LSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-------------- 379 (545)
Q Consensus 317 ~~~l~t~s~dg~I~vwd~~~~~~---~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~-------------- 379 (545)
+++|++++.|+.|++||+..... ......+|...|.+++|+|++. ++++++.||.|++||++
T Consensus 108 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 186 (372)
T 1k8k_C 108 EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 186 (372)
T ss_dssp SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTB
T ss_pred CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEcccccccccccccccc
Confidence 99999999999999999987652 2334467899999999999875 55688899999999954
Q ss_pred ----CCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCc
Q 009059 380 ----NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL 454 (545)
Q Consensus 380 ----~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~ 454 (545)
.++++..+. +...+.+++|+|++..+++++.|+.|++||+++++.+..+..|...|.+++|+|++.+|+++.|+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~ 266 (372)
T 1k8k_C 187 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCF 266 (372)
T ss_dssp SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSS
T ss_pred cccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCe
Confidence 566776664 456799999999999999999999999999999999999999999999999999999999988999
Q ss_pred EEEEEcCC--CC-----------------------------CcceE------EEE-eeCCCceEEEEEc-CCC---CEEE
Q 009059 455 VRVWSIGS--GS-----------------------------KGECI------HEL-SCTGNKFHSCVFH-PTF---PSLL 492 (545)
Q Consensus 455 I~vwd~~~--~~-----------------------------~~~~i------~~~-~~~~~~v~~~~~s-p~~---~~l~ 492 (545)
|++|++.. +. ..... ..+ .+|...|.+++|+ +++ .+|+
T Consensus 267 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~ 346 (372)
T 1k8k_C 267 PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC 346 (372)
T ss_dssp CEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEE
T ss_pred EEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEE
Confidence 99999987 31 00110 222 3788999999966 666 8999
Q ss_pred EEEcCCeEEEEeCCCCe
Q 009059 493 VIGCYETLELWNMTENK 509 (545)
Q Consensus 493 ~~~~dg~I~iwd~~~~~ 509 (545)
+++.||.|++||+.+++
T Consensus 347 s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 347 TTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEETTSEEEEEEHHHHH
T ss_pred EecCCCceEEEEecChh
Confidence 99999999999986643
No 92
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-33 Score=283.02 Aligned_cols=251 Identities=20% Similarity=0.351 Sum_probs=213.7
Q ss_pred CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-eeeeEeccCcccEEEEEEeCCC-CcEEEEEcCCCc
Q 009059 295 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSE 372 (545)
Q Consensus 295 ~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~-~~~~~~~~h~~~V~~l~~~p~~-~~ll~s~s~dg~ 372 (545)
|+++..+.+|...|++++|+|++++|++++.||.|+|||+.... ..+..+.+|...|++++|+++. ..+|++++.||.
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 35567788999999999999999999999999999999997432 2466788999999999998762 356779999999
Q ss_pred EEEEECCCCc--eeeEEe-ccCCeeEEEEeCC--CCEEEEEECCCeEEEEECCCC--EEEEEecCCCCCEEEEEEcC---
Q 009059 373 IRYWSINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNT--- 442 (545)
Q Consensus 373 I~lwd~~~~~--~~~~~~-~~~~v~~l~~sp~--~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~~I~~l~~sp--- 442 (545)
|++||+.+++ .+..+. +...+.+++|+|+ +..+++++.|+.|++||+++. .....+..|...|.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence 9999999886 444444 4567999999999 899999999999999999887 34556778999999999999
Q ss_pred ----------CCCEEEEEe-CCcEEEEEcCCCCC-cceEEEEeeCCCceEEEEEcCC---CCEEEEEEcCCeEEEEeCCC
Q 009059 443 ----------SGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPT---FPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 443 ----------~g~~l~s~s-dg~I~vwd~~~~~~-~~~i~~~~~~~~~v~~~~~sp~---~~~l~~~~~dg~I~iwd~~~ 507 (545)
++.+|++++ |+.|++||++++.. ...+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.+
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 699999999 99999999987643 2355678889999999999999 89999999999999999988
Q ss_pred Ce----EE--EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 508 NK----TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 508 ~~----~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+. .. ....|...|++++|+|++++|++++.||.|+|||
T Consensus 241 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 241 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred CCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 63 22 2334889999999999999999999999999996
No 93
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.5e-33 Score=284.11 Aligned_cols=259 Identities=14% Similarity=0.146 Sum_probs=215.2
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEEecc---CCccEEEEEEc
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFS 314 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~~~~~~l~~---h~~~V~~l~~s 314 (545)
|..+++|+..++.... ...+.+|.+.|.+++|+| ++++|++++.|+.|++||+.+ ..+..+.. |...|.+++|+
T Consensus 95 dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~ 172 (383)
T 3ei3_B 95 GGDIILWDYDVQNKTS-FIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVS 172 (383)
T ss_dssp TSCEEEEETTSTTCEE-EECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEE
T ss_pred CCeEEEEeCCCcccce-eeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEEC
Confidence 5678888888765432 233457999999999999 789999999999999999986 44555543 45889999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC----CceeeEEecc
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKCQ 390 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~----~~~~~~~~~~ 390 (545)
|++++|++++.|+.|++||+. +. .+..+.+|...|.+++|+|++..++++++.|+.|++||+++ +.++..+.+.
T Consensus 173 ~~~~~l~~~~~d~~i~i~d~~-~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 250 (383)
T 3ei3_B 173 VSRQMLATGDSTGRLLLLGLD-GH-EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHE 250 (383)
T ss_dssp TTTTEEEEEETTSEEEEEETT-SC-EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECS
T ss_pred CCCCEEEEECCCCCEEEEECC-CC-EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCC
Confidence 999999999999999999995 33 47888899999999999999886888999999999999997 6777778888
Q ss_pred CCeeEEEEeC-CCCEEEEEECCCeEEEEECCCCEEEEEecCCC-----------------CCEEEEEEcCCCCEEEEEe-
Q 009059 391 SGATQMRFQP-RLGRILAAAIENYISILDVETQVCRLKLQGHK-----------------NQVHSVCWNTSGEYLASVS- 451 (545)
Q Consensus 391 ~~v~~l~~sp-~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-----------------~~I~~l~~sp~g~~l~s~s- 451 (545)
..+.+++|+| ++..|++++.|+.|++||+++++....+.+|. ..+..++|+|++++ +++
T Consensus 251 ~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~ 328 (383)
T 3ei3_B 251 KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLND 328 (383)
T ss_dssp SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTC
T ss_pred CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCC
Confidence 8999999999 99999999999999999999876655554432 34445666666666 445
Q ss_pred CCcEEEEEcCCCCCcceEEEEee--CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 452 DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 452 dg~I~vwd~~~~~~~~~i~~~~~--~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
|+.|++||+.++ .++..+.. +...+..++|+|++++|++++ |+.|++||+++
T Consensus 329 d~~i~iwd~~~~---~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 329 KRTIDIYDANSG---GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCCEEEEETTTC---CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCeEEEEecCCC---ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 899999999887 66777776 456777889999999999996 99999999875
No 94
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-32 Score=268.97 Aligned_cols=258 Identities=16% Similarity=0.209 Sum_probs=223.6
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC---eEEEEeccCCccEEEEEEc
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~---~~~~~l~~h~~~V~~l~~s 314 (545)
.|..+++|+..++. ....+..|...|.+++|+|++++|++++.|+.|++|++... +.+..+.+|...|.+++|
T Consensus 37 ~dg~v~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~- 112 (313)
T 3odt_A 37 RDGTVRLWSKDDQW---LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF- 112 (313)
T ss_dssp TTSEEEEEEESSSE---EEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE-
T ss_pred cCCcEEEEECCCCE---EEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe-
Confidence 46788999987765 34567789999999999999999999999999999998654 567788899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccCC
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSG 392 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~~ 392 (545)
++.+|++++.||.|++|| . ......+..|...+.++.|.|....++++++.||.|++||. .+....+. +...
T Consensus 113 -~~~~l~~~~~d~~i~~~d--~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~ 186 (313)
T 3odt_A 113 -QDGVVISGSWDKTAKVWK--E-GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDV 186 (313)
T ss_dssp -ETTEEEEEETTSEEEEEE--T-TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSC
T ss_pred -cCCEEEEEeCCCCEEEEc--C-CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCccc
Confidence 577999999999999999 2 33477888899999999999844566779999999999994 44555554 5667
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEE
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~ 471 (545)
+.+++|+|++. +++++.|+.|++||+++++.+..+.+|...|.+++|+|++. |++++ |+.|++||+.++ ..+..
T Consensus 187 i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~---~~~~~ 261 (313)
T 3odt_A 187 VRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENG---SLKQV 261 (313)
T ss_dssp EEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEEETTSEEEEECTTTC---CEEEE
T ss_pred EEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEEEecCCEEEEEECCCC---ceeEE
Confidence 99999999966 99999999999999999999999999999999999999996 55555 999999999887 67888
Q ss_pred EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 472 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 472 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
+..+...|.+++|+|+++ +++++.|+.|++||+++++..
T Consensus 262 ~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 262 ITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred EeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 888999999999999998 778999999999999987765
No 95
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=265.66 Aligned_cols=264 Identities=19% Similarity=0.275 Sum_probs=226.9
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.|..+++||..+|..... ..+.+|...|++++|+|++++||+|+.||.|+|||+++++.+..+.+|...+.++.+ ++
T Consensus 43 ~D~tV~iWd~~tg~~~~~-~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~ 119 (318)
T 4ggc_A 43 LDNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NS 119 (318)
T ss_dssp ETTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ET
T ss_pred eCCEEEEEECCCCCEEEE-EEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CC
Confidence 467899999999875543 345688999999999999999999999999999999999999999999999887766 46
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee-----EEeccCC
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSG 392 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~-----~~~~~~~ 392 (545)
.+|++++.++.+++|+.......+..+.+|...+..+.+.+++. ++++++.|+.|++||+++++... .......
T Consensus 120 ~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 198 (318)
T 4ggc_A 120 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA 198 (318)
T ss_dssp TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSC
T ss_pred CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCcceeEEECCCCcccccceeeecccCCc
Confidence 79999999999999999988777888999999999999999975 55599999999999998765432 2234456
Q ss_pred eeEEEEeCCCCEEE---EEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe---CCcEEEEEcCCCCCc
Q 009059 393 ATQMRFQPRLGRIL---AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKG 466 (545)
Q Consensus 393 v~~l~~sp~~~~l~---~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s---dg~I~vwd~~~~~~~ 466 (545)
+..+.+.+.+..++ +++.++.|++||.+......... +...+..++|++++..+++++ |+.|++||+.++
T Consensus 199 v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~--- 274 (318)
T 4ggc_A 199 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM--- 274 (318)
T ss_dssp EEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---
T ss_pred eEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC---
Confidence 89999999876554 33457899999999987776655 678899999999999887654 789999999887
Q ss_pred ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe
Q 009059 467 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 467 ~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 509 (545)
.++.++.+|...|++++|+|++++|++++.|++|+|||+.+..
T Consensus 275 ~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 275 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 7888999999999999999999999999999999999997653
No 96
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2.1e-32 Score=276.79 Aligned_cols=274 Identities=14% Similarity=0.157 Sum_probs=216.0
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEE-EEEeCCCeEEEEEC
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDT 334 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l-~t~s~dg~I~vwd~ 334 (545)
+..+.+|.+.|+|++|+|||++||+|+.+ .++||++.+++.......+ .+..++|.++++++ ++++.|++|++||+
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~ 88 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWDD 88 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence 44568899999999999999999999866 4789999988776554432 47788898888877 56778899999999
Q ss_pred CCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC-ceeeEEeccCCeeEEEEeCCCCEEEEE--ECC
Q 009059 335 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAA--AIE 411 (545)
Q Consensus 335 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~~~--~~d 411 (545)
.+++. +..+. |...|.++.|+++. ++ ++. ++.|++||+.++ +.+..+.. ....+++++ ..++++ +.+
T Consensus 89 ~~~~~-~~~~~-~~~~v~~v~~~~~~--~~-~~~-~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~ 158 (355)
T 3vu4_A 89 VKKQD-VSRIK-VDAPVKDLFLSREF--IV-VSY-GDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNL 158 (355)
T ss_dssp TTTEE-EEEEE-CSSCEEEEEECSSE--EE-EEE-TTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCT
T ss_pred CCCcE-EEEEE-CCCceEEEEEcCCE--EE-EEE-cCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcC
Confidence 98764 56665 66799999999762 33 333 789999999988 77666654 444566676 566664 679
Q ss_pred CeEEEEECCCCE---------------E-EEEecCCCCCEEEEEEcCCCCEEEEEe-CCc-EEEEEcCCCCCcceEEEEe
Q 009059 412 NYISILDVETQV---------------C-RLKLQGHKNQVHSVCWNTSGEYLASVS-DEL-VRVWSIGSGSKGECIHELS 473 (545)
Q Consensus 412 g~I~i~d~~~~~---------------~-~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~-I~vwd~~~~~~~~~i~~~~ 473 (545)
|.|++||++++. + +..+.+|...|.+++|+|+|++|++++ |++ |++||++++ .++..+.
T Consensus 159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~---~~~~~~~ 235 (355)
T 3vu4_A 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG---VLVREFR 235 (355)
T ss_dssp TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC---CEEEEEE
T ss_pred cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEE
Confidence 999999999865 2 677889999999999999999999999 998 999999887 7788887
Q ss_pred -e-CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE---Ee--------------------c-cCCCCeeEEEEeC
Q 009059 474 -C-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TL--------------------S-AHDKLVSSLAAST 527 (545)
Q Consensus 474 -~-~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~---~~--------------------~-~h~~~V~~l~~sp 527 (545)
+ |...|.+++|+|++++|++++.|+.|++||+...... .+ . .+......++|++
T Consensus 236 ~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 315 (355)
T 3vu4_A 236 RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS 315 (355)
T ss_dssp CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS
T ss_pred cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC
Confidence 4 8999999999999999999999999999999765321 11 0 1122347799999
Q ss_pred CCCEEEEEeCCCcEEEcC
Q 009059 528 VNGMVASASHDKCVKIWK 545 (545)
Q Consensus 528 d~~~las~s~Dg~I~iWd 545 (545)
++++|++++.||.+++|+
T Consensus 316 d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 316 ESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp SSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEE
Confidence 999999999999999985
No 97
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.1e-34 Score=288.29 Aligned_cols=266 Identities=14% Similarity=0.156 Sum_probs=211.0
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe---EEEEeccCCccEEEEEEc
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~---~~~~l~~h~~~V~~l~~s 314 (545)
.|..+++|+..++. +..+..+.+|.+.|++++|+|++++|++++.|+.|+|||+.+++ ....+..|...|.+++|+
T Consensus 31 ~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 109 (377)
T 3dwl_C 31 ATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS 109 (377)
T ss_dssp SSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECC
T ss_pred CCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEEC
Confidence 45678889887652 34577889999999999999999999999999999999999877 677788999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCe--eeeEecc-CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-----------
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDY--SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----------- 380 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~--~~~~~~~-h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~----------- 380 (545)
|++++|++++.|+.|++||++.+.. ....+.. |...|.+++|+|++. ++++++.|+.|++||+..
T Consensus 110 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 188 (377)
T 3dwl_C 110 PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASV 188 (377)
T ss_dssp TTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCS
T ss_pred CCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccc
Confidence 9999999999999999999987652 3566777 999999999999875 666999999999999852
Q ss_pred -------CceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE----EEEecCCCCCEEEEEEcCCCCEEEE
Q 009059 381 -------GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC----RLKLQGHKNQVHSVCWNTSGEYLAS 449 (545)
Q Consensus 381 -------~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~----~~~~~~h~~~I~~l~~sp~g~~l~s 449 (545)
++++..+.+...+.+++|+|++.+|++++.|+.|++||+++++. +..+.+|...|.+++|+|++++|++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 268 (377)
T 3dwl_C 189 WGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAA 268 (377)
T ss_dssp SCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEE
T ss_pred cccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEE
Confidence 44555555666799999999999999999999999999998876 7788899999999999999999999
Q ss_pred EeCCcEEEEEcCCCCC---------------------------cceE------EEE----------------eeCCCceE
Q 009059 450 VSDELVRVWSIGSGSK---------------------------GECI------HEL----------------SCTGNKFH 480 (545)
Q Consensus 450 ~sdg~I~vwd~~~~~~---------------------------~~~i------~~~----------------~~~~~~v~ 480 (545)
++++.+.+|+...... ...+ ..+ ..|...|.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~ 348 (377)
T 3dwl_C 269 GYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIA 348 (377)
T ss_dssp ESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEE
T ss_pred EcCCcEEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeE
Confidence 9977777887752210 0000 111 12888999
Q ss_pred EEEEcCCCC----EEEEEEcCCeEEEEeC
Q 009059 481 SCVFHPTFP----SLLVIGCYETLELWNM 505 (545)
Q Consensus 481 ~~~~sp~~~----~l~~~~~dg~I~iwd~ 505 (545)
++.+.+... .|++++.||.|++||+
T Consensus 349 ~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 349 TLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred EEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 999766543 5999999999999985
No 98
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.4e-32 Score=277.12 Aligned_cols=300 Identities=15% Similarity=0.255 Sum_probs=217.0
Q ss_pred cceeeeeecCCceeeEEEEe----------ecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCcc
Q 009059 239 DRVGRSAEVGKGFTFTEFQL----------IPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW 307 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~----------l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~ 307 (545)
|..+++|+..++.....+.. ..+|...|.+++|+| ++.+|++++.|+.|++||+.+++....+. +...
T Consensus 65 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~ 143 (408)
T 4a11_B 65 DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEET 143 (408)
T ss_dssp TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSC
T ss_pred CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCc
Confidence 45677777766543322221 136999999999999 78899999999999999999999888876 7788
Q ss_pred EEEEEEcCC---CCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc-e
Q 009059 308 ITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-C 383 (545)
Q Consensus 308 V~~l~~sp~---~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~-~ 383 (545)
+.++.|++. +.+|++++.|+.|++||+.++.. +..+.+|...|.+++|+|++..++++++.||.|++||++++. +
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~ 222 (408)
T 4a11_B 144 VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC 222 (408)
T ss_dssp EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC
T ss_pred eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc
Confidence 999999984 45999999999999999998764 788889999999999999998888899999999999998765 3
Q ss_pred eeEE----------------eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCC------CCEEEEEEc
Q 009059 384 AGVF----------------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK------NQVHSVCWN 441 (545)
Q Consensus 384 ~~~~----------------~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~------~~I~~l~~s 441 (545)
+..+ .+...+.+++|+|++.++++++.||.|++||+++++....+..+. .....+...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (408)
T 4a11_B 223 LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG 302 (408)
T ss_dssp SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCS
T ss_pred cccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecC
Confidence 3332 244669999999999999999999999999999887654443221 122223333
Q ss_pred CCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCee
Q 009059 442 TSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVS 521 (545)
Q Consensus 442 p~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~ 521 (545)
....+++++.++.|++||+.++ ..+..+..|...|.+++|+|++++|++++.|+.|++||+.+++.+.........
T Consensus 303 ~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~- 378 (408)
T 4a11_B 303 CSSEFVFVPYGSTIAVYTVYSG---EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK- 378 (408)
T ss_dssp SSSCEEEEEETTEEEEEETTTC---CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------------
T ss_pred CCceEEEEecCCEEEEEECcCC---cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec-
Confidence 4456666666999999999887 778889999999999999999999999999999999999998877322222222
Q ss_pred EEEEeC-CCCEEEEEeCCCcEEEcC
Q 009059 522 SLAAST-VNGMVASASHDKCVKIWK 545 (545)
Q Consensus 522 ~l~~sp-d~~~las~s~Dg~I~iWd 545 (545)
..+.+ ....+.+++.|+.+++|+
T Consensus 379 -~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 379 -SQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp -------------------------
T ss_pred -cccccccceeecccCccCceeecC
Confidence 22333 334566777899999995
No 99
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-33 Score=292.32 Aligned_cols=263 Identities=16% Similarity=0.228 Sum_probs=218.2
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe-ccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCC---CCe--eee
Q 009059 270 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN---PDY--SLR 342 (545)
Q Consensus 270 ~~spdg~~latg~~dg~I~lwd~~~~~~~~~l-~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~---~~~--~~~ 342 (545)
.|+|+++.+++++ .|+ .+++.+..+ .+|.+.|++++|+| ++.+|++|+.||+|+|||+.+ +.. ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 3677887777665 388 556888888 89999999999999 999999999999999999875 321 122
Q ss_pred EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC---CCceeeEEe-------------ccCCeeEEE--EeCCCCE
Q 009059 343 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFK-------------CQSGATQMR--FQPRLGR 404 (545)
Q Consensus 343 ~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~---~~~~~~~~~-------------~~~~v~~l~--~sp~~~~ 404 (545)
.+ .|...|.+++|+|++. ++++++.||.|++||+. +++....+. ....+.++. +++++..
T Consensus 107 ~~-~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 107 TY-DCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EE-ECSSCEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred ec-cCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCE
Confidence 23 5999999999999865 56699999999999995 555444333 234456666 5578889
Q ss_pred EEEEECCCeEEEEECCCCEEEEEecC--CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe-eCCCceE
Q 009059 405 ILAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFH 480 (545)
Q Consensus 405 l~~~~~dg~I~i~d~~~~~~~~~~~~--h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~-~~~~~v~ 480 (545)
+++++.|+.|++||+++++.+..+.+ |...|++++|+|++.+|++++ |+.|++||++++ .++..+. .+...|.
T Consensus 185 l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~ 261 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDHAPIT 261 (437)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTCEEEE
T ss_pred EEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCCCceE
Confidence 99999999999999999999999988 889999999999999999999 999999999886 7777775 6777899
Q ss_pred EEEEcC----CCCEEEEEEcCCeEEEEeCCCCeEE-Eecc--------------------------CCCCeeEEEEeCCC
Q 009059 481 SCVFHP----TFPSLLVIGCYETLELWNMTENKTL-TLSA--------------------------HDKLVSSLAASTVN 529 (545)
Q Consensus 481 ~~~~sp----~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~--------------------------h~~~V~~l~~spd~ 529 (545)
+++|+| ++.+|++++.|+.|++||+.+++.+ .+.+ |...|++++|+ ++
T Consensus 262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~ 340 (437)
T 3gre_A 262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND 340 (437)
T ss_dssp EEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT
T ss_pred EEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc
Confidence 996664 5779999999999999999998876 3332 56678999999 77
Q ss_pred CEEEEEeCCCcEEEcC
Q 009059 530 GMVASASHDKCVKIWK 545 (545)
Q Consensus 530 ~~las~s~Dg~I~iWd 545 (545)
++|++|+.||.|++||
T Consensus 341 ~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 341 KILLTDEATSSIVMFS 356 (437)
T ss_dssp EEEEEEGGGTEEEEEE
T ss_pred eEEEecCCCCeEEEEE
Confidence 8999999999999996
No 100
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-31 Score=280.66 Aligned_cols=272 Identities=16% Similarity=0.180 Sum_probs=222.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe---EEEEecc-------------------------------------
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEE------------------------------------- 303 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~---~~~~l~~------------------------------------- 303 (545)
.+|.|++|+++|++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478999999999977766 57899999999888 5555442
Q ss_pred -----------------CCccEEEEEEcCCCCEE-EEEeCCCeEEEEECC--CCCeeeeEec--cCcccEEEEEEeCCCC
Q 009059 304 -----------------HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTE--NPDYSLRTFT--GHSTTVMSLDFHPSKE 361 (545)
Q Consensus 304 -----------------h~~~V~~l~~sp~~~~l-~t~s~dg~I~vwd~~--~~~~~~~~~~--~h~~~V~~l~~~p~~~ 361 (545)
|...|.+++|+|++++| ++++.||.|+|||+. ++.. +..+. .|...|.+++|+|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-LKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-EEEEEEEECSSCEEEEEECTTSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-eeeeecccCCCCceEEEEcCCCC
Confidence 33479999999999996 899999999999998 6554 55554 5678999999999975
Q ss_pred cEEEEEcCCCcEEEEECCCCceee----EE-eccCCeeEEEEeCC---CCEEEEEECCCeEEEEECCCCEEEEE-ecCCC
Q 009059 362 DLLCSCDNNSEIRYWSINNGSCAG----VF-KCQSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLK-LQGHK 432 (545)
Q Consensus 362 ~ll~s~s~dg~I~lwd~~~~~~~~----~~-~~~~~v~~l~~sp~---~~~l~~~~~dg~I~i~d~~~~~~~~~-~~~h~ 432 (545)
+|++++.+|.|++|++.++.... .+ .+...+.+++|+|+ +.+|++++.|+.|++||++++..+.. +.+|.
T Consensus 163 -~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~ 241 (450)
T 2vdu_B 163 -TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK 241 (450)
T ss_dssp -EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred -EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence 45588889999999998877553 33 35577999999999 88999999999999999999887776 56899
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe-------------------------eCCCceEEEEEcC
Q 009059 433 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------------------------CTGNKFHSCVFHP 486 (545)
Q Consensus 433 ~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~-------------------------~~~~~v~~~~~sp 486 (545)
..|.+++|+ ++.+|++++ |+.|++||+.++ .++..+. .....|..++|+|
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG---KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTC---CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCC---cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 999999999 999999999 999999999987 4555554 2245789999999
Q ss_pred CCCEEEEEE-cCCeEEEEeC--CCC---eEE-EeccCCCCeeEEEEeCCCCEEEEEeC-------CCcEEEc
Q 009059 487 TFPSLLVIG-CYETLELWNM--TEN---KTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIW 544 (545)
Q Consensus 487 ~~~~l~~~~-~dg~I~iwd~--~~~---~~~-~~~~h~~~V~~l~~spd~~~las~s~-------Dg~I~iW 544 (545)
++++|++++ .++.|++|++ ..+ +.+ .+..| ..|.+++|+|++ ++++.+. +..|.||
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEE
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEE
Confidence 999999999 8899999999 554 444 55566 889999999954 5554433 4557777
No 101
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.5e-32 Score=280.79 Aligned_cols=270 Identities=16% Similarity=0.190 Sum_probs=222.7
Q ss_pred cccceeeeeecCCce-eeEEEEeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC-------eEEEEeccCCcc
Q 009059 237 PRDRVGRSAEVGKGF-TFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQW 307 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~-~~~~~~~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~-------~~~~~l~~h~~~ 307 (545)
..+..+++|+..+.. ....+..+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++ +.+..+.+|...
T Consensus 54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~ 133 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133 (402)
T ss_dssp SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSC
T ss_pred cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCe
Confidence 346778899876543 3345667889999999999999 9999999999999999999987 567888999999
Q ss_pred EEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeeeEe--ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee
Q 009059 308 ITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 384 (545)
Q Consensus 308 V~~l~~sp~~-~~l~t~s~dg~I~vwd~~~~~~~~~~~--~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~ 384 (545)
|.+++|+|++ .+|++++.||.|++||+.++.. +..+ .+|...|.+++|+|++..+ ++++.||.|++||+++++.+
T Consensus 134 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~ 211 (402)
T 2aq5_A 134 VGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-VLTLGPDVHPDTIYSVDWSRDGALI-CTSCRDKRVRVIEPRKGTVV 211 (402)
T ss_dssp EEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-EEEECTTTCCSCEEEEEECTTSSCE-EEEETTSEEEEEETTTTEEE
T ss_pred EEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-cEEEecCCCCCceEEEEECCCCCEE-EEEecCCcEEEEeCCCCcee
Confidence 9999999998 6999999999999999998764 6777 7899999999999987654 58889999999999999998
Q ss_pred eEE-eccC-C-eeEEEEeCCCCEEEEE---ECCCeEEEEECCCCEE-EEEe-cCCCCCEEEEEEcCCCCEEEE-Ee-CCc
Q 009059 385 GVF-KCQS-G-ATQMRFQPRLGRILAA---AIENYISILDVETQVC-RLKL-QGHKNQVHSVCWNTSGEYLAS-VS-DEL 454 (545)
Q Consensus 385 ~~~-~~~~-~-v~~l~~sp~~~~l~~~---~~dg~I~i~d~~~~~~-~~~~-~~h~~~I~~l~~sp~g~~l~s-~s-dg~ 454 (545)
..+ ..+. . +..+.|+|++..++++ +.|+.|++||++++.. +... ..|...|.+++|+|++.+|++ ++ |+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~ 291 (402)
T 2aq5_A 212 AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS 291 (402)
T ss_dssp EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC
T ss_pred eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe
Confidence 887 3333 2 7999999998777777 5899999999998643 2222 247788999999999999864 54 899
Q ss_pred EEEEEcCCCCC-cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 455 VRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 455 I~vwd~~~~~~-~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
|++||+.++.. ...+..+. +...+.+++|+|++.++++ .++.+++|++.+++..
T Consensus 292 i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 292 IRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp EEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred EEEEEecCCCcceEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 99999988753 22333333 5689999999999987654 5669999999887654
No 102
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-33 Score=287.10 Aligned_cols=262 Identities=9% Similarity=0.068 Sum_probs=212.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 340 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~ 340 (545)
.-...|.+++|+|||+++|+++.|++|+ |...+ ..+.+|...|.+++|+|+| .++.+.+|+.+...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-- 78 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-- 78 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC--
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEeCCCce--
Confidence 3456799999999999999999999999 75554 4457999999999999998 45555665543211
Q ss_pred eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC-----CeeEEEEeCCCCEEEEEECCCeEE
Q 009059 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-----GATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 341 ~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~-----~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
...+ .|...|.+++|+|+|..+ ++++.||.|++||... ++..+.++. .+.+++|+|+|.+|++++.||.|+
T Consensus 79 ~~~~-~~~~~V~~vawSPdG~~L-As~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 79 LLNS-QPVCYPRVCKPSPIDDWM-AVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp SSTT-SCSCCEEEEEECSSSSCE-EEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred Eeec-CCCCcEEEEEECCCCCEE-EEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 2222 458899999999998654 5889999999999654 555555332 499999999999999999999999
Q ss_pred EEECCCCE-------EEEEe----cCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEE-eeCCCceEEEE
Q 009059 416 ILDVETQV-------CRLKL----QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCV 483 (545)
Q Consensus 416 i~d~~~~~-------~~~~~----~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~-~~~~~~v~~~~ 483 (545)
+||+.++. .+.++ .+|...|.+++|+|+| +++++.|+.|++||+..........++ ..|...|.+++
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 99999874 35666 6688899999999999 555444999999999876532244566 36788999999
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEE--eCCCCEEEEEeCCCcEEEcC
Q 009059 484 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAA--STVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 484 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~--spd~~~las~s~Dg~I~iWd 545 (545)
|+ +..|++++ +++|++||+.+++.. ...+|...|..++| +|++..|++++.||+ ++|.
T Consensus 234 Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 234 IV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp EE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred EE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 99 57777776 699999999999985 34389999999999 999999999999999 9984
No 103
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.2e-32 Score=286.51 Aligned_cols=267 Identities=14% Similarity=0.193 Sum_probs=213.9
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEEecc--CCccEEEEEE
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRF 313 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~~~~~~l~~--h~~~V~~l~~ 313 (545)
..|..+++|+...+... .+..+.+|.+.|++|+|+| ++.+|++|+.||+|+|||+++......... +...+.+++|
T Consensus 139 s~dg~i~lWd~~~~~~~-~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 217 (435)
T 4e54_B 139 SKGGDIMLWNFGIKDKP-TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDV 217 (435)
T ss_dssp ETTSCEEEECSSCCSCC-EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEE
T ss_pred eCCCEEEEEECCCCCce-eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEE
Confidence 34677888888766432 3445779999999999998 789999999999999999987655444433 4456889999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE----ec
Q 009059 314 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KC 389 (545)
Q Consensus 314 sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~----~~ 389 (545)
+|++.+|++|+.||.|++||++.. .+..+.+|...|.+++|+|++..++++|+.|+.|++||+++.+....+ .+
T Consensus 218 ~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h 295 (435)
T 4e54_B 218 SASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPH 295 (435)
T ss_dssp ETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBC
T ss_pred CCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeec
Confidence 999999999999999999999753 367888999999999999999889999999999999999887654333 35
Q ss_pred cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCC------CEEEEEEcCCCCEEEEEe------------
Q 009059 390 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN------QVHSVCWNTSGEYLASVS------------ 451 (545)
Q Consensus 390 ~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~------~I~~l~~sp~g~~l~s~s------------ 451 (545)
...|.+++|+|++.+|++++.||.|++||+.++.....+..|.. .+..+.|+|++.+++++.
T Consensus 296 ~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 375 (435)
T 4e54_B 296 RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPY 375 (435)
T ss_dssp SSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTT
T ss_pred cccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEec
Confidence 66799999999999999999999999999999887777766543 234556777777766654
Q ss_pred -CCcEEEEEcCCCCCcceEEEEe-eCCCceEEE-EEcCCCCEEEEEEcCCeEEEEeCCCCeE
Q 009059 452 -DELVRVWSIGSGSKGECIHELS-CTGNKFHSC-VFHPTFPSLLVIGCYETLELWNMTENKT 510 (545)
Q Consensus 452 -dg~I~vwd~~~~~~~~~i~~~~-~~~~~v~~~-~~sp~~~~l~~~~~dg~I~iwd~~~~~~ 510 (545)
++.|++||..++ ..+..+. .|...|.++ +|+|++.+|+++ .|+.|+|||+++++.
T Consensus 376 ~~~~i~iwd~~~g---~~~~~l~~~~~~~v~s~~~fspdg~~lasg-~d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 376 ELRTIDVFDGNSG---KMMCQLYDPESSGISSLNEFNPMGDTLASA-MGYHILIWSQQEART 433 (435)
T ss_dssp CCCCEEEECSSSC---CEEEEECCSSCCCCCCEEEECTTSSCEEEE-CSSEEEECCCC----
T ss_pred CCCEEEEEECCCC---cEEEEEeCCCCCcEEEEEEECCCCCEEEEE-cCCcEEEEECCcCee
Confidence 247999999887 5555543 577778887 699999988775 488999999998865
No 104
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-33 Score=298.05 Aligned_cols=256 Identities=9% Similarity=0.057 Sum_probs=198.2
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCeEE----EEeccCCccEEEEEEcCC------CCEEEEEeCCCeEEEEECCCCCe--
Q 009059 272 SPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPS------LSRLATSSADRTVRVWDTENPDY-- 339 (545)
Q Consensus 272 spdg~~latg~~dg~I~lwd~~~~~~~----~~l~~h~~~V~~l~~sp~------~~~l~t~s~dg~I~vwd~~~~~~-- 339 (545)
+|+++.||+++.|++|+||++.+++.. ..+..|.+.|.+|+|+|+ +.+||+++.||+|+|||+..+..
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 344445555678899999999876542 446678899999999996 57999999999999999986532
Q ss_pred --------eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce-eeEEe-ccCCeeEE--EEeCCC-CEEE
Q 009059 340 --------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQM--RFQPRL-GRIL 406 (545)
Q Consensus 340 --------~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~-~~~~~-~~~~v~~l--~~sp~~-~~l~ 406 (545)
+...+.+|...|++++|++++ .|++|+.||+|++||++++.. ...+. +...|.++ .|++++ ..|+
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEE
Confidence 124678899999999999863 677999999999999997643 34444 55679998 567776 7889
Q ss_pred EEECCCeEEEEECCCCEEEEEecCCCC--CEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEE
Q 009059 407 AAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 483 (545)
Q Consensus 407 ~~~~dg~I~i~d~~~~~~~~~~~~h~~--~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~ 483 (545)
+++.|++|+|||++++++...+.+|.. .|.+++|+|++..|++++ |++|++||++++ .++..+.+|...|++++
T Consensus 328 S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~---~~~~~l~gH~~~V~sva 404 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA---FAVHPLVSRETTITAIG 404 (524)
T ss_dssp EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT---TCCEEEEECSSCEEEEE
T ss_pred EeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc---ccceeeecCCCceEEEE
Confidence 999999999999998876666666543 588999999999999988 889999999887 56667888999999999
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCeEEEecc-----CCCCeeEEEEeCCCCEE
Q 009059 484 FHPTFPSLLVIGCYETLELWNMTENKTLTLSA-----HDKLVSSLAASTVNGMV 532 (545)
Q Consensus 484 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~-----h~~~V~~l~~spd~~~l 532 (545)
|+|++++|++|+.|++|++||+.......... +...|+.++|+|+++.+
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred eCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeE
Confidence 99999999999999999999986642111111 12257899999999855
No 105
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=8.3e-32 Score=279.68 Aligned_cols=300 Identities=17% Similarity=0.278 Sum_probs=236.5
Q ss_pred eeeecCCceeeEEEEeecCCCCCeEEEEEcCCC----------CEEEEEeC----CCcEEEEEcC---------------
Q 009059 243 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG----------KLLATGGH----DKKAVLWCTE--------------- 293 (545)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg----------~~latg~~----dg~I~lwd~~--------------- 293 (545)
++|.......+..+.... -.-+..|+.|.|+. .+|++|+. .+.|.++++.
T Consensus 26 ~~wk~n~~~~y~~~~~~~-l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~ 104 (430)
T 2xyi_A 26 KIWKKNTPFLYDLVMTHA-LEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDN 104 (430)
T ss_dssp HHHHHHHHHHEEEEEEEE-CSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC-------------
T ss_pred hhHhhCChHHHHHHhhcC-CCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccc
Confidence 455444443333333221 22356788888865 35777764 3456666532
Q ss_pred -----------CCeE-EEEeccCCccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCC---------CeeeeEeccCcccE
Q 009059 294 -----------SFTV-KSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP---------DYSLRTFTGHSTTV 351 (545)
Q Consensus 294 -----------~~~~-~~~l~~h~~~V~~l~~sp~-~~~l~t~s~dg~I~vwd~~~~---------~~~~~~~~~h~~~V 351 (545)
+++. ......|.+.|++++|+|+ +.+|++++.||.|++||+... ...+..+.+|...|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v 184 (430)
T 2xyi_A 105 EKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEG 184 (430)
T ss_dssp -------------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCC
T ss_pred cccccccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCe
Confidence 1122 2344679999999999997 789999999999999999762 23467888999999
Q ss_pred EEEEEeCCCCcEEEEEcCCCcEEEEECCCCce-------eeEE-eccCCeeEEEEeC-CCCEEEEEECCCeEEEEECCCC
Q 009059 352 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-------AGVF-KCQSGATQMRFQP-RLGRILAAAIENYISILDVETQ 422 (545)
Q Consensus 352 ~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~-------~~~~-~~~~~v~~l~~sp-~~~~l~~~~~dg~I~i~d~~~~ 422 (545)
++++|+|++..+|++|+.||.|++||+..+.. ...+ .+...+.+++|+| ++..|++++.|+.|++||++++
T Consensus 185 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~ 264 (430)
T 2xyi_A 185 YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN 264 (430)
T ss_dssp CCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 99999999876888999999999999987432 2233 3456799999999 6677888899999999999987
Q ss_pred ---EEEEEecCCCCCEEEEEEcCCCC-EEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCC-EEEEEEc
Q 009059 423 ---VCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGC 496 (545)
Q Consensus 423 ---~~~~~~~~h~~~I~~l~~sp~g~-~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~-~l~~~~~ 496 (545)
..+..+..|...|++++|+|++. +|++++ |+.|++||++... ..+..+..|...|.+++|+|+++ +|++++.
T Consensus 265 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~ 342 (430)
T 2xyi_A 265 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSGT 342 (430)
T ss_dssp CSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEEEEET
T ss_pred CCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEEEEeC
Confidence 56777888999999999999987 677888 9999999998743 45677888999999999999995 5889999
Q ss_pred CCeEEEEeCCC--------------CeEE-EeccCCCCeeEEEEeCCCC-EEEEEeCCCcEEEcC
Q 009059 497 YETLELWNMTE--------------NKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 545 (545)
Q Consensus 497 dg~I~iwd~~~--------------~~~~-~~~~h~~~V~~l~~spd~~-~las~s~Dg~I~iWd 545 (545)
|+.|+|||+.. ...+ .+.+|...|++++|+|++. +|++++.||.|+||+
T Consensus 343 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 343 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred CCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 99999999977 2333 6678999999999999999 999999999999996
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.5e-31 Score=278.09 Aligned_cols=273 Identities=18% Similarity=0.360 Sum_probs=221.3
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.|..+++|+..++. .+..+.+|.+.|++++| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|++
T Consensus 151 ~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-- 223 (435)
T 1p22_A 151 RDNTIKIWDKNTLE---CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN-- 223 (435)
T ss_dssp SSSCEEEEESSSCC---EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--
T ss_pred CCCeEEEEeCCCCe---EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--
Confidence 46788999988775 45678899999999999 788999999999999999999999999999999999999974
Q ss_pred CEEEEEeCCCeEEEEECCCCCee--eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCee
Q 009059 318 SRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGAT 394 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~--~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~ 394 (545)
.+|++|+.||.|++||+.++... ...+.+|...|.+++|. ..++++|+.||.|++||+++++++..+.. ...+.
T Consensus 224 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 300 (435)
T 1p22_A 224 GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA 300 (435)
T ss_dssp TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEE
Confidence 59999999999999999876642 26778999999999994 34667999999999999999999988874 45688
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC------cc
Q 009059 395 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------GE 467 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~------~~ 467 (545)
++.++ +..+++++.||.|++||+++++.+..+.+|...|.+++| ++.+|++++ ||.|++||+.++.. ..
T Consensus 301 ~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~ 376 (435)
T 1p22_A 301 CLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 376 (435)
T ss_dssp EEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTT
T ss_pred EEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccch
Confidence 88885 579999999999999999999999999999999999999 788999999 99999999976531 12
Q ss_pred eEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEe
Q 009059 468 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 526 (545)
Q Consensus 468 ~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~s 526 (545)
++..+..|...|.+++| ++.+|++++.|+.|++||+.+...........+..++.|.
T Consensus 377 ~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 433 (435)
T 1p22_A 377 CLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYI 433 (435)
T ss_dssp EEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----------------------
T ss_pred heeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccceeee
Confidence 78889999999999999 6778999999999999999887766443444455555554
No 107
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-33 Score=278.18 Aligned_cols=265 Identities=9% Similarity=0.025 Sum_probs=210.5
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC---------CCCee
Q 009059 270 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---------NPDYS 340 (545)
Q Consensus 270 ~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~---------~~~~~ 340 (545)
.+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +....
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 445678899999999999999999998888776 567888899988 9999999999999766 33322
Q ss_pred eeEeccCcccEEEEEEeC--CCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccCCeeEEEEeCCCCEEEEEECCCeEEE
Q 009059 341 LRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISI 416 (545)
Q Consensus 341 ~~~~~~h~~~V~~l~~~p--~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~~~~~dg~I~i 416 (545)
.....+|...|.+++|+| ++. ++++++.||.|++||++++++..... +...+.+++|+|++..+++++.||.|++
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 233346778999999999 764 56699999999999999998876653 3346999999999999999999999999
Q ss_pred EECCCCEEE-EEecC-CCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCce--EEEEEcCCCCEEE
Q 009059 417 LDVETQVCR-LKLQG-HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF--HSCVFHPTFPSLL 492 (545)
Q Consensus 417 ~d~~~~~~~-~~~~~-h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v--~~~~~sp~~~~l~ 492 (545)
||+++++.+ ..+.. |...|++++|+|++.+|++++|+.|++||+++......+..+..+...+ .+++|+|++++|+
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence 999999877 77888 9999999999999999999997799999999875433232222233333 4699999999999
Q ss_pred EEEc-CCeEEEEeCCCCeEE-EeccCCCCeeEEEEeC---CCCEEEEEeCCCcEEEc
Q 009059 493 VIGC-YETLELWNMTENKTL-TLSAHDKLVSSLAAST---VNGMVASASHDKCVKIW 544 (545)
Q Consensus 493 ~~~~-dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~sp---d~~~las~s~Dg~I~iW 544 (545)
+++. ++.|++|++...... .. .++..+.|.+ +...|++++.||.+.++
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred EecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 9998 999999998655322 22 4567777887 77788888888887765
No 108
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3.1e-30 Score=263.50 Aligned_cols=262 Identities=11% Similarity=0.128 Sum_probs=223.2
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeeeEeccCcccEEEE
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 354 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l-~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l 354 (545)
.++++++.|+.|++||+.+++.+..+..|.. +.+++|+|++++| ++++.|+.|++||+.+++. +..+..+. .+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeE-EEEEECCC-Cccce
Confidence 4678889999999999999999999887754 8999999999977 6677899999999988764 55665444 89999
Q ss_pred EEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEE-EEEECCCeEEEEECCCCEEEEEecCCCC
Q 009059 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI-LAAAIENYISILDVETQVCRLKLQGHKN 433 (545)
Q Consensus 355 ~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~~~~~dg~I~i~d~~~~~~~~~~~~h~~ 433 (545)
+|+|++..++++++.++.|++||+.+++.+..+..+..+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+ .
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 999999888888888899999999999999999888889999999999888 45566999999999999998888755 5
Q ss_pred CEEEEEEcCCCCEEE-EEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE---cCCeEEEEeCCCC
Q 009059 434 QVHSVCWNTSGEYLA-SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG---CYETLELWNMTEN 508 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~-s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~---~dg~I~iwd~~~~ 508 (545)
.+.+++|+|++++|+ ++. ++.|++||++++ .++..+. +...+.+++|+|++++|++++ .++.|++||+.++
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCC---eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 679999999999885 555 789999999876 5555554 466889999999999999988 6889999999999
Q ss_pred eEEEeccCCCCeeEEEEeCCCCEE-EEEeCCCcEEEcC
Q 009059 509 KTLTLSAHDKLVSSLAASTVNGMV-ASASHDKCVKIWK 545 (545)
Q Consensus 509 ~~~~~~~h~~~V~~l~~spd~~~l-as~s~Dg~I~iWd 545 (545)
+.+........+.+++|+|++++| ++++.|+.|++||
T Consensus 235 ~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 235 KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 887433334568999999999977 6778899999996
No 109
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.6e-31 Score=277.57 Aligned_cols=252 Identities=19% Similarity=0.366 Sum_probs=218.6
Q ss_pred EeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCC----------CeEEEEeccCCccEEEEEEcCCCC-EEEEEe
Q 009059 257 QLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLS-RLATSS 324 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spd-g~~latg~~dg~I~lwd~~~----------~~~~~~l~~h~~~V~~l~~sp~~~-~l~t~s 324 (545)
....+|.+.|++++|+|+ +.+||+++.||.|+||++.. .+.+..+.+|...|++++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445679999999999997 78999999999999999986 677888899999999999999988 999999
Q ss_pred CCCeEEEEECCCCCe------eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC---ceeeEE-eccCCee
Q 009059 325 ADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVF-KCQSGAT 394 (545)
Q Consensus 325 ~dg~I~vwd~~~~~~------~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~---~~~~~~-~~~~~v~ 394 (545)
.||.|++||+..... ....+.+|...|.+++|+|++..+|++++.||.|++||++++ ..+..+ .+...+.
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987332 135677899999999999977788889999999999999987 455555 4557799
Q ss_pred EEEEeCCCC-EEEEEECCCeEEEEECCC-CEEEEEecCCCCCEEEEEEcCCCC-EEEEEe-CCcEEEEEcCCCCC-----
Q 009059 395 QMRFQPRLG-RILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSK----- 465 (545)
Q Consensus 395 ~l~~sp~~~-~l~~~~~dg~I~i~d~~~-~~~~~~~~~h~~~I~~l~~sp~g~-~l~s~s-dg~I~vwd~~~~~~----- 465 (545)
+++|+|++. .+++++.||.|++||+++ ...+..+..|...|.+++|+|++. +|++++ |+.|+|||+.....
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence 999999887 577899999999999998 567788889999999999999985 677777 99999999987321
Q ss_pred ------cceEEEEeeCCCceEEEEEcCCCC-EEEEEEcCCeEEEEeCCCC
Q 009059 466 ------GECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 466 ------~~~i~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~ 508 (545)
...+..+.+|...|.+++|+|+++ +|++++.|+.|+||++...
T Consensus 362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 256777888899999999999999 8999999999999998654
No 110
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.1e-30 Score=265.26 Aligned_cols=262 Identities=11% Similarity=0.110 Sum_probs=204.8
Q ss_pred ccceeeeeecCCcee-----e--EEEEeecCCCCCeEEEEEcCCCCEEEEEe-----------CCCcEEEEEcCCCeEE-
Q 009059 238 RDRVGRSAEVGKGFT-----F--TEFQLIPASTSKVESCHFSPDGKLLATGG-----------HDKKAVLWCTESFTVK- 298 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~-----~--~~~~~l~~H~~~V~~l~~spdg~~latg~-----------~dg~I~lwd~~~~~~~- 298 (545)
.+..+++|++..+.. + .....+.+|...|.+++++ ++.+++|. .|+.+++|++......
T Consensus 41 i~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~ 118 (365)
T 4h5i_A 41 IPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQL 118 (365)
T ss_dssp CCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEE
T ss_pred CCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceE
Confidence 345678888765421 1 1223577899999998875 45676653 4778999997654321
Q ss_pred ---EEe-----ccCCccEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEc
Q 009059 299 ---STL-----EEHTQWITDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 368 (545)
Q Consensus 299 ---~~l-----~~h~~~V~~l~~sp~~~~l~t~s--~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s 368 (545)
... ..+...+.+++|+|||++|++++ .|++|+|||+.+... +..+. |...|.+++|+|++. ++++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~-~~~~~-~~~~V~~v~fspdg~-~l~s~s 195 (365)
T 4h5i_A 119 EFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE-KFEIE-TRGEVKDLHFSTDGK-VVAYIT 195 (365)
T ss_dssp EEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE-EEEEE-CSSCCCEEEECTTSS-EEEEEC
T ss_pred EEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE-EEEeC-CCCceEEEEEccCCc-eEEecc
Confidence 111 23556799999999999987654 689999999998764 55554 778899999999986 555777
Q ss_pred CCCcEEEEECCCCceeeEEe---ccCCeeEEEEeCCCCEEEEEECCC----eEEEEECCCCEE----EEEecCCCCCEEE
Q 009059 369 NNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIEN----YISILDVETQVC----RLKLQGHKNQVHS 437 (545)
Q Consensus 369 ~dg~I~lwd~~~~~~~~~~~---~~~~v~~l~~sp~~~~l~~~~~dg----~I~i~d~~~~~~----~~~~~~h~~~I~~ 437 (545)
++.+++|+..++..+.... +...+.+++|+|++..+++++.++ .+++|++..... ...+.+|...|++
T Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~ 274 (365)
T 4h5i_A 196 -GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITS 274 (365)
T ss_dssp -SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEE
T ss_pred -ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEe
Confidence 5567778877777654432 334589999999999999998877 688899877643 3567789999999
Q ss_pred EEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEE-eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 438 VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 438 l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~-~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
++|+|+|++||+|+ |+.|+|||+.++ .++..+ .+|...|++++|+|++++|++++.|++|+|||+..+
T Consensus 275 ~~~Spdg~~lasgs~D~~V~iwd~~~~---~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 275 MDVDMKGELAVLASNDNSIALVKLKDL---SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEECTTSCEEEEEETTSCEEEEETTTT---EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEECCCCCceEEEcCCCEEEEEECCCC---cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999 999999999887 777775 689999999999999999999999999999999654
No 111
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-32 Score=299.68 Aligned_cols=252 Identities=20% Similarity=0.319 Sum_probs=213.8
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCeEEEEeccCCccEEEEEEcCC--CCEEEEEeCCCeEEE
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 331 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~--~~~~~~~l~~h~~~V~~l~~sp~--~~~l~t~s~dg~I~v 331 (545)
+.++.+|.+.|++++|+|++++|++|+.||.|+|||+. +++.+..+.+|...|++++|+++ +.+|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 35688999999999999999999999999999999998 56778889999999999999987 999999999999999
Q ss_pred EECCCCCe-eeeEeccCcccEEEEEEeCCC-CcEEEEEcCCCcEEEEECCCCceee---EEeccCCeeEEEEeC------
Q 009059 332 WDTENPDY-SLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAG---VFKCQSGATQMRFQP------ 400 (545)
Q Consensus 332 wd~~~~~~-~~~~~~~h~~~V~~l~~~p~~-~~ll~s~s~dg~I~lwd~~~~~~~~---~~~~~~~v~~l~~sp------ 400 (545)
||+.++.. .+..+.+|...|.+++|+|+. ..++++|+.||.|++||++++.... ...+...+.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 99998652 467788899999999999982 3466699999999999998874332 234556799999999
Q ss_pred -------CCCEEEEEECCCeEEEEECCCC----EEEEEecCCCCCEEEEEEcCC---CCEEEEEe-CCcEEEEEcCCCCC
Q 009059 401 -------RLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 401 -------~~~~l~~~~~dg~I~i~d~~~~----~~~~~~~~h~~~I~~l~~sp~---g~~l~s~s-dg~I~vwd~~~~~~ 465 (545)
++..+++++.||.|++||++++ .....+.+|...|++++|+|+ +.+|++++ |+.|++||+.++..
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence 4889999999999999999876 667788899999999999999 89999999 99999999988632
Q ss_pred c--ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 466 G--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 466 ~--~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
. ..+.....+...|.+++|+|++.+|++++.||.|++||+..
T Consensus 242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 1 12223345778899999999999999999999999999874
No 112
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2e-29 Score=257.51 Aligned_cols=269 Identities=14% Similarity=0.151 Sum_probs=223.6
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~l-atg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
.+..+++|+..++... ..+.+|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.+++|+|+
T Consensus 10 ~d~~v~v~d~~~~~~~---~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spd 84 (391)
T 1l0q_A 10 ESDNISVIDVTSNKVT---ATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPD 84 (391)
T ss_dssp TTTEEEEEETTTTEEE---EEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTT
T ss_pred CCCEEEEEECCCCeEE---EEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCC
Confidence 4578999999888643 4455664 49999999999977 667789999999999999998887665 8999999999
Q ss_pred CCEEEEE-eCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeE
Q 009059 317 LSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ 395 (545)
Q Consensus 317 ~~~l~t~-s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~ 395 (545)
+++|+++ +.++.|++||+.+++. +..+.. ...+.+++|+|+++.++++++.++.|++||+.+++.+..+..+..+..
T Consensus 85 g~~l~~~~~~~~~v~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 162 (391)
T 1l0q_A 85 GKQVYVTNMASSTLSVIDTTSNTV-AGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKG 162 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEE-EEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCeE-EEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcce
Confidence 9988655 4679999999998764 555554 457899999999988878999999999999999999999988888999
Q ss_pred EEEeCCCCEEE-EEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe----CCcEEEEEcCCCCCcceEE
Q 009059 396 MRFQPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 396 l~~sp~~~~l~-~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s----dg~I~vwd~~~~~~~~~i~ 470 (545)
++|+|+++.++ ++..++.|++||+++++.+..+. +...+.+++|+|++++|++++ ++.|++||+.++ ..+.
T Consensus 163 ~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~---~~~~ 238 (391)
T 1l0q_A 163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---KITA 238 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---EEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC---eEEE
Confidence 99999998885 45568999999999998887776 567899999999999888775 679999999877 5666
Q ss_pred EEeeCCCceEEEEEcCCCCEEE-EEEcCCeEEEEeCCCCeEE-EeccCCC
Q 009059 471 ELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMTENKTL-TLSAHDK 518 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~~~l~-~~~~dg~I~iwd~~~~~~~-~~~~h~~ 518 (545)
.+..+ ..+.+++|+|++++|+ +++.++.|++||+.+++.+ .+..|..
T Consensus 239 ~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 239 RIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp EEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred EEecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 66654 4578999999999885 5567889999999999887 4444443
No 113
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.8e-31 Score=274.96 Aligned_cols=262 Identities=14% Similarity=0.251 Sum_probs=212.5
Q ss_pred ccceeeeeecCCce--------eeEEEEeecCCC------------CCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCC
Q 009059 238 RDRVGRSAEVGKGF--------TFTEFQLIPAST------------SKVESCHFSPDG--KLLATGGHDKKAVLWCTESF 295 (545)
Q Consensus 238 ~d~~~~~~~~~~~~--------~~~~~~~l~~H~------------~~V~~l~~spdg--~~latg~~dg~I~lwd~~~~ 295 (545)
.|..+++|+..++. .+..+..+.+|. +.|++++|+|++ .+|++++.|+.|++||+.++
T Consensus 48 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~ 127 (447)
T 3dw8_B 48 KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISER 127 (447)
T ss_dssp TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEE
T ss_pred CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccc
Confidence 35677788777554 344677888998 899999999998 79999999999999998764
Q ss_pred eEE---------------------------------------EE-eccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 296 TVK---------------------------------------ST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 296 ~~~---------------------------------------~~-l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
+.. .. ..+|...|.+++|+|++++|++| .|+.|++||+.
T Consensus 128 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~ 206 (447)
T 3dw8_B 128 DKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLE 206 (447)
T ss_dssp EEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETT
T ss_pred cCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECC
Confidence 432 12 46899999999999999999999 89999999998
Q ss_pred CCCeeee-------EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce----eeEEeccC-------------
Q 009059 336 NPDYSLR-------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKCQS------------- 391 (545)
Q Consensus 336 ~~~~~~~-------~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~----~~~~~~~~------------- 391 (545)
.....+. .+.+|...|.+++|+|++..++++|+.||.|++||+++++. +..+..+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (447)
T 3dw8_B 207 ITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIIS 286 (447)
T ss_dssp EEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTT
T ss_pred CCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCc
Confidence 5444344 35689999999999999867788999999999999999886 56666543
Q ss_pred CeeEEEEeCCCCEEEEEECCCeEEEEECCC-CEEEEEecCCCCC---------------EEEEEEcCCCCEEEEEe-CCc
Q 009059 392 GATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQ---------------VHSVCWNTSGEYLASVS-DEL 454 (545)
Q Consensus 392 ~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~-~~~~~~~~~h~~~---------------I~~l~~sp~g~~l~s~s-dg~ 454 (545)
.+.+++|+|++.+|++++. +.|++||+++ ++++..+.+|... +..++|+|++.+|++++ |+.
T Consensus 287 ~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~ 365 (447)
T 3dw8_B 287 SISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF 365 (447)
T ss_dssp CEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE
T ss_pred eEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCE
Confidence 7999999999999999988 9999999997 7888888877532 33499999999999999 999
Q ss_pred EEEEEcCCCCCcceEEEEe---------------------------------eCCCceEEEEEcCCCCEEEEEEcCCeEE
Q 009059 455 VRVWSIGSGSKGECIHELS---------------------------------CTGNKFHSCVFHPTFPSLLVIGCYETLE 501 (545)
Q Consensus 455 I~vwd~~~~~~~~~i~~~~---------------------------------~~~~~v~~~~~sp~~~~l~~~~~dg~I~ 501 (545)
|++||+.++. .+ .+. .....|..++|+|++.+|++++.++ ++
T Consensus 366 v~iwd~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~ 440 (447)
T 3dw8_B 366 FRMFDRNTKR---DI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LY 440 (447)
T ss_dssp EEEEETTTCC---EE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EE
T ss_pred EEEEEcCCCc---ce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-ee
Confidence 9999998863 22 211 1235688999999999888777765 88
Q ss_pred EEeCC
Q 009059 502 LWNMT 506 (545)
Q Consensus 502 iwd~~ 506 (545)
+|..+
T Consensus 441 ~~~~~ 445 (447)
T 3dw8_B 441 IFQDK 445 (447)
T ss_dssp EEECC
T ss_pred eeccc
Confidence 88654
No 114
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-32 Score=282.34 Aligned_cols=245 Identities=10% Similarity=0.116 Sum_probs=204.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCc-----cEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-----WITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~-----~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
.|...|.+|+|||||++||+++.||.|+|||.+. ++..+. |.. .|.+++|+|||++||+|+.||+|+|||+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 5688999999999999999999999999999654 666677 665 49999999999999999999999999999
Q ss_pred CCCe------eeeEe----ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee---eEEe--ccCCeeEEEEeC
Q 009059 336 NPDY------SLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK--CQSGATQMRFQP 400 (545)
Q Consensus 336 ~~~~------~~~~~----~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~---~~~~--~~~~v~~l~~sp 400 (545)
++.. .+.++ .+|...|.+++|+|++ +++++.|+.|++||+.++... .++. +...|.+++|+
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs- 235 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV- 235 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence 8652 34565 6788899999999997 457777999999999887743 3453 34679999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEE--cCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCC
Q 009059 401 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW--NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN 477 (545)
Q Consensus 401 ~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~--sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~ 477 (545)
+..+++++ ++.|++||+.+++......+|...|..+.| +|++..|+++. ||+ ++|...
T Consensus 236 -g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------------- 296 (588)
T 2j04_A 236 -DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------------- 296 (588)
T ss_dssp -TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------
T ss_pred -CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------
Confidence 57777776 799999999998885444479999999999 99999999999 889 999975
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeC
Q 009059 478 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 537 (545)
Q Consensus 478 ~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~ 537 (545)
.+.++|++..++.. |+++++|+...+....+ .+...|.+++|+|||+.+|+++.
T Consensus 297 ---~~~~spd~~l~a~~--d~~v~lW~~~g~~l~~~-~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ---ELHVTADNIIAPYL--EKKFKKWSTIWNEFNNY-ETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ---SEEEECCCSSHHHH--HHHHHHTTTTTTSSSSS-CCEEEEEEEEECTTSSEEEEEEE
T ss_pred ---cEEECCCceEEEEc--CCEEEEEECCCCceeee-ccceEEEEEEECCCCCEEEEEEe
Confidence 15689999766554 88999999876654333 34677999999999999999874
No 115
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.98 E-value=1.2e-30 Score=260.96 Aligned_cols=255 Identities=13% Similarity=0.112 Sum_probs=218.9
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEc-CCCeEEEEecc--CCccEEEEEE
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT-ESFTVKSTLEE--HTQWITDVRF 313 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~-~latg~~dg~I~lwd~-~~~~~~~~l~~--h~~~V~~l~~ 313 (545)
.|..+++|+...+........+.+|...|++++|+|+++ +|++|+.||.|++||+ .+++. ..+.+ |...|.+++|
T Consensus 31 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~ 109 (342)
T 1yfq_A 31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICK 109 (342)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEE
T ss_pred CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEe
Confidence 356788999887764445566679999999999999999 9999999999999999 87655 67788 9999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCC---------CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-Cce
Q 009059 314 SPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSC 383 (545)
Q Consensus 314 sp~~~~l~t~s~dg~I~vwd~~~---------~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~-~~~ 383 (545)
+| +.+|++++.|+.|++||+.+ ... +..+. |...|.+++|+|++ +++++.|+.|++||+++ +..
T Consensus 110 ~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~ 183 (342)
T 1yfq_A 110 YG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN-SNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDD 183 (342)
T ss_dssp ET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC-SSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTC
T ss_pred CC-CCEEEEEcCCCeEEEEcccccccccccccCCe-eeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccc
Confidence 99 99999999999999999886 442 44555 88999999999875 66888999999999998 553
Q ss_pred e---eEEeccCCeeEEEEeC-CCCEEEEEECCCeEEEEECCCC------EEEEEecCCCC---------CEEEEEEcCCC
Q 009059 384 A---GVFKCQSGATQMRFQP-RLGRILAAAIENYISILDVETQ------VCRLKLQGHKN---------QVHSVCWNTSG 444 (545)
Q Consensus 384 ~---~~~~~~~~v~~l~~sp-~~~~l~~~~~dg~I~i~d~~~~------~~~~~~~~h~~---------~I~~l~~sp~g 444 (545)
. ....+...+.+++|+| ++..+++++.||.|++|+++.. +....+..|.. .|.+++|+|++
T Consensus 184 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 263 (342)
T 1yfq_A 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH 263 (342)
T ss_dssp CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT
T ss_pred cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC
Confidence 2 2223456799999999 9999999999999999999876 67777877765 99999999999
Q ss_pred CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC-CCceEEEEEcCCCCEEEEEEcCCe-EEEEe
Q 009059 445 EYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCYET-LELWN 504 (545)
Q Consensus 445 ~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~-~~~v~~~~~sp~~~~l~~~~~dg~-I~iwd 504 (545)
++|++++ |+.|++||+.++ ..+..+..| ...|.+++ |++.+|++++.|+. .+.|.
T Consensus 264 ~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 264 KFLYTAGSDGIISCWNLQTR---KKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CCEEEEETTSCEEEEETTTT---EEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred CEEEEecCCceEEEEcCccH---hHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 9999999 999999999887 778888888 99999999 99999999999998 54444
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.8e-31 Score=291.85 Aligned_cols=248 Identities=21% Similarity=0.367 Sum_probs=210.1
Q ss_pred EEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-eeeeEeccCcccEEEEEEeCCC-CcEEEEEcCCCcEEE
Q 009059 298 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRY 375 (545)
Q Consensus 298 ~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~-~~~~~~~~h~~~V~~l~~~p~~-~~ll~s~s~dg~I~l 375 (545)
+..+.+|.+.|++++|+|++++|++|+.||.|+|||+..+. ..+..+.+|.+.|++++|+|+. ..++++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 34678999999999999999999999999999999997432 3467888999999999999872 356679999999999
Q ss_pred EECCCCc--eeeEEe-ccCCeeEEEEeCC--CCEEEEEECCCeEEEEECCCC--EEEEEecCCCCCEEEEEEcC------
Q 009059 376 WSINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNT------ 442 (545)
Q Consensus 376 wd~~~~~--~~~~~~-~~~~v~~l~~sp~--~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~~I~~l~~sp------ 442 (545)
||+.+++ .+..+. +...+.+++|+|+ +..+++++.||.|++||++++ .....+.+|...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999886 444443 5567999999999 899999999999999999877 34456778999999999999
Q ss_pred -------CCCEEEEEe-CCcEEEEEcCCCCCc-ceEEEEeeCCCceEEEEEcCC---CCEEEEEEcCCeEEEEeCCCCe-
Q 009059 443 -------SGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTGNKFHSCVFHPT---FPSLLVIGCYETLELWNMTENK- 509 (545)
Q Consensus 443 -------~g~~l~s~s-dg~I~vwd~~~~~~~-~~i~~~~~~~~~v~~~~~sp~---~~~l~~~~~dg~I~iwd~~~~~- 509 (545)
++.+|++++ ||.|++||++++... .++..+..|...|.+++|+|+ +.+|++++.|+.|++||+.++.
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence 588899988 999999999876432 456678889999999999999 8999999999999999998863
Q ss_pred -----EEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 510 -----TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 510 -----~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
......|...|++++|+|++++|++++.||.|+|||
T Consensus 242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence 223446889999999999999999999999999996
No 117
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=6.9e-31 Score=269.47 Aligned_cols=259 Identities=15% Similarity=0.116 Sum_probs=177.6
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE-----EEeccCCccEEEEEEcC--------CCCEEEEEeC
Q 009059 259 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-----STLEEHTQWITDVRFSP--------SLSRLATSSA 325 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~-----~~l~~h~~~V~~l~~sp--------~~~~l~t~s~ 325 (545)
...|...+....+++++.+||+++.|++|+|||..+++.. ..+.+|.+.|++|+|+| ++++||+|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 3456666667777778889999999999999999887654 34689999999999997 7899999999
Q ss_pred CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC-e--eEEEEeCCC
Q 009059 326 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-A--TQMRFQPRL 402 (545)
Q Consensus 326 dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~-v--~~l~~sp~~ 402 (545)
|++|+|||+.++.. +..+..|...|.+++|+|++..+|++++.|+.|++||+++++.......... . ..+.+..
T Consensus 165 D~tv~~Wd~~~~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~-- 241 (393)
T 4gq1_A 165 DCTLIIWRLTDEGP-ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT-- 241 (393)
T ss_dssp TSEEEEEEEETTEE-EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES--
T ss_pred CCeEEEEECCCCce-eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc--
Confidence 99999999987664 6667778899999999999888888999999999999998876554432111 1 1111111
Q ss_pred CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEc-CCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceE
Q 009059 403 GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN-TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 480 (545)
Q Consensus 403 ~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~s-p~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~ 480 (545)
..........+|...+.++.|+ ++++.|++++ |+.+++||+..+.. ...+..+...+.
T Consensus 242 -----------------~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~---~~~l~~~~~~~~ 301 (393)
T 4gq1_A 242 -----------------LPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND---YNEISDSTMKLG 301 (393)
T ss_dssp -----------------GGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------
T ss_pred -----------------ccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC---CceEeeecCccc
Confidence 1111122345688899999987 7999999999 99999999987632 222222222222
Q ss_pred E------------------EEEcC--CCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCC
Q 009059 481 S------------------CVFHP--TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 481 ~------------------~~~sp--~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg 539 (545)
. +.|++ ++.++++++.|+.|++||+.+++.. .+..|...|.+++|+|||++||+++.||
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 302 PKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp --CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred cEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 2 23333 2335566677999999999988776 6678999999999999999999999888
Q ss_pred c
Q 009059 540 C 540 (545)
Q Consensus 540 ~ 540 (545)
.
T Consensus 382 v 382 (393)
T 4gq1_A 382 V 382 (393)
T ss_dssp E
T ss_pred e
Confidence 5
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.1e-28 Score=255.56 Aligned_cols=244 Identities=10% Similarity=0.048 Sum_probs=203.2
Q ss_pred cCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcC--CCeEEEEec--cCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 260 PASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE--SFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg~~l-atg~~dg~I~lwd~~--~~~~~~~l~--~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
.+|.+.|++++|+|++++| |+|+.||.|+|||+. +++.+..+. .|...|.+++|+|++++|++++.||.|++|++
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI 178 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence 4677789999999999996 899999999999999 888888776 56789999999999999999999999999999
Q ss_pred CCCCe---eeeEeccCcccEEEEEEeCC--CCcEEEEEcCCCcEEEEECCCCceeeEEe--ccCCeeEEEEeCCCCEEEE
Q 009059 335 ENPDY---SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILA 407 (545)
Q Consensus 335 ~~~~~---~~~~~~~h~~~V~~l~~~p~--~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~~ 407 (545)
.+... ....+.+|...|.+++|+|+ +..+|++++.|+.|++||+.+++++..+. +...+.+++|+ ++.+|++
T Consensus 179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s 257 (450)
T 2vdu_B 179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLS 257 (450)
T ss_dssp TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEE
T ss_pred CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEE
Confidence 87653 22367789999999999998 23566699999999999999998887643 56779999999 9999999
Q ss_pred EECCCeEEEEECCCCEEEEEecC-------------------------CCCCEEEEEEcCCCCEEEEEe--CCcEEEEEc
Q 009059 408 AAIENYISILDVETQVCRLKLQG-------------------------HKNQVHSVCWNTSGEYLASVS--DELVRVWSI 460 (545)
Q Consensus 408 ~~~dg~I~i~d~~~~~~~~~~~~-------------------------h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~ 460 (545)
++.|+.|++||+++++.+..+.. ....|.+++|+|++++|++++ ++.|++|++
T Consensus 258 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 258 AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 99999999999999988887752 245799999999999999887 779999999
Q ss_pred --CCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc-------CCeEEEEeCC
Q 009059 461 --GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-------YETLELWNMT 506 (545)
Q Consensus 461 --~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~-------dg~I~iwd~~ 506 (545)
..+.....+..+..+ ..|.+++|+|++ .+++.+. +..|.+|.+.
T Consensus 338 ~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 338 SEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp CSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred ccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence 544444667777776 889999999954 4444433 3457777653
No 119
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.7e-29 Score=250.40 Aligned_cols=273 Identities=18% Similarity=0.233 Sum_probs=198.8
Q ss_pred ccceeeeeecCCce-eeEEEEeecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCC---------eEEEEeccCC
Q 009059 238 RDRVGRSAEVGKGF-TFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESF---------TVKSTLEEHT 305 (545)
Q Consensus 238 ~d~~~~~~~~~~~~-~~~~~~~l~~H~~~V~~l~~sp--dg~~latg~~dg~I~lwd~~~~---------~~~~~l~~h~ 305 (545)
.|..+++|+..++. .+..+..+.+|...|++++|+| |+++|++|+.||.|++||+.++ +.+..+..|.
T Consensus 31 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 110 (351)
T 3f3f_A 31 SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK 110 (351)
T ss_dssp TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS
T ss_pred CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccC
Confidence 46788999988653 4456788899999999999999 6999999999999999999887 6678889999
Q ss_pred ccEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeeeEe-------------ccCcccEEEEEEeCC--CCcEEEEEc
Q 009059 306 QWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTF-------------TGHSTTVMSLDFHPS--KEDLLCSCD 368 (545)
Q Consensus 306 ~~V~~l~~sp~--~~~l~t~s~dg~I~vwd~~~~~~~~~~~-------------~~h~~~V~~l~~~p~--~~~ll~s~s 368 (545)
..|.+++|+|+ +.+|++++.||.|++||+.++.. +..+ ..|...+.+++|+|+ ...++++++
T Consensus 111 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 189 (351)
T 3f3f_A 111 GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD-LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA 189 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC-TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE
T ss_pred CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH-hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEec
Confidence 99999999999 99999999999999999987653 2221 267889999999997 345677888
Q ss_pred CCCcEEEEECCCCce--eeEEe-ccCCeeEEEEeCCC----CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEc
Q 009059 369 NNSEIRYWSINNGSC--AGVFK-CQSGATQMRFQPRL----GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 441 (545)
Q Consensus 369 ~dg~I~lwd~~~~~~--~~~~~-~~~~v~~l~~sp~~----~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~s 441 (545)
.++.+.+|+...+.. +..+. +...+.+++|+|++ ..|++++.||.|++||++++........+...+....+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 269 (351)
T 3f3f_A 190 LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNS 269 (351)
T ss_dssp TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------
T ss_pred CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCC
Confidence 899998888887765 33333 45679999999998 789999999999999998876555544444455555555
Q ss_pred CCCCEEEEEe-CC-cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 442 TSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 442 p~g~~l~s~s-dg-~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
+....++.+. ++ ....+.+........+..+..|...|.+++|+|++++|++++.|+.|++||+.+++..
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 270 ADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp ---------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred cccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 5555555544 22 2333333222333778888899999999999999999999999999999999887544
No 120
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=3.8e-29 Score=252.01 Aligned_cols=252 Identities=11% Similarity=0.167 Sum_probs=207.8
Q ss_pred EEEcCCCeEEEEeccCCccEEEEEEcCC---CCEEEEEeCCCeEEEEECCC-CCeeeeEeccCcccEEEEEEeCCCCcEE
Q 009059 289 LWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPSKEDLL 364 (545)
Q Consensus 289 lwd~~~~~~~~~l~~h~~~V~~l~~sp~---~~~l~t~s~dg~I~vwd~~~-~~~~~~~~~~h~~~V~~l~~~p~~~~ll 364 (545)
.|+....+.+..+.+|.+.|++++|+|+ +++|++|+.||.|++||+.+ +......+.+|...|.+++|+|++. +|
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l 101 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS-KV 101 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSS-EE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCC-EE
Confidence 3455677788889999999999999998 59999999999999999997 4443478889999999999999875 55
Q ss_pred EEEcCCCcEEEEECCCCceeeEEeccCCeeEEEE--eCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcC
Q 009059 365 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRF--QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 442 (545)
Q Consensus 365 ~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~--sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp 442 (545)
++++.||.|++||+.+++.+....+...+.+++| ++++..+++++.|+.|++||+++++.+..+..+. .+.++.+.+
T Consensus 102 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~ 180 (368)
T 3mmy_A 102 FTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY 180 (368)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET
T ss_pred EEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC
Confidence 5899999999999999999988888899999999 8898899999999999999999998888888654 677777764
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE----EEEEEcCCeEEEEeCCCCeE----EEe
Q 009059 443 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS----LLVIGCYETLELWNMTENKT----LTL 513 (545)
Q Consensus 443 ~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~----l~~~~~dg~I~iwd~~~~~~----~~~ 513 (545)
..++++. ++.+++|++..... ............+.++.+.++... +++++.++.|++||+..... ..+
T Consensus 181 --~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~ 257 (368)
T 3mmy_A 181 --PMAVVATAERGLIVYQLENQPS-EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF 257 (368)
T ss_dssp --TEEEEEEGGGCEEEEECSSSCE-EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE
T ss_pred --CeeEEEeCCCcEEEEEeccccc-hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee
Confidence 3566665 99999999987532 111112233455666777666554 99999999999999988632 256
Q ss_pred ccCCC------------CeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 514 SAHDK------------LVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 514 ~~h~~------------~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
..|.. .|++++|+|++++|++++.||.|+|||
T Consensus 258 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 301 (368)
T 3mmy_A 258 KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWD 301 (368)
T ss_dssp ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEE
Confidence 66665 799999999999999999999999996
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=3e-29 Score=253.63 Aligned_cols=245 Identities=9% Similarity=0.024 Sum_probs=187.8
Q ss_pred EEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEc
Q 009059 289 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 368 (545)
Q Consensus 289 lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s 368 (545)
||++.+.+.+..+..|...|++++|+|++++|++|+.++ ++||++..... ..... ...+..+++.++++.++++++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~ 78 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-IMSQE--MRHLSKVRMLHRTNYVAFVTG 78 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-EEEEE--CSCCCEEEECTTSSEEEEECS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-eeeee--cCCeEEEEEcCCCCEEEEEEC
Confidence 566777777777889999999999999999999998775 78999886543 22222 224778888888877777888
Q ss_pred CCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCC-EEEEEecCCCCCEEEEEEcCCCCEE
Q 009059 369 NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYL 447 (545)
Q Consensus 369 ~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l 447 (545)
.|+.|++||+.+++++..+.+...+.++.|+++ .+ +.+.++.|++||+.++ +.+..+.. ....+++++ .++
T Consensus 79 ~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~-~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l 150 (355)
T 3vu4_A 79 VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FI-VVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL 150 (355)
T ss_dssp STTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EE-EEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred CccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EE-EEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence 899999999999999999998899999999886 23 3345899999999987 55554443 444566667 666
Q ss_pred EEE--e-CCcEEEEEcCCCCCc------------c-eEEEEeeCCCceEEEEEcCCCCEEEEEEcCCe-EEEEeCCCCeE
Q 009059 448 ASV--S-DELVRVWSIGSGSKG------------E-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYET-LELWNMTENKT 510 (545)
Q Consensus 448 ~s~--s-dg~I~vwd~~~~~~~------------~-~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~-I~iwd~~~~~~ 510 (545)
+++ + ||.|++||+.++... . ++..+..|...|.+++|+|++.+|++++.|++ |++||+.+++.
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 664 4 899999999875310 1 26778899999999999999999999999998 99999999988
Q ss_pred E-Eec-c-CCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 511 L-TLS-A-HDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 511 ~-~~~-~-h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+ .+. + |...|.+++|+|++++|++++.|++|+|||
T Consensus 231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence 8 555 4 999999999999999999999999999996
No 122
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.9e-28 Score=239.69 Aligned_cols=259 Identities=13% Similarity=0.063 Sum_probs=192.0
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC--
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-- 316 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~-- 316 (545)
+..+++|+..++..++.+.++.+|..+|..+.|.||..-|++..- | .-+...|..|+|+|+
T Consensus 62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~----------------~~~~~~v~sla~spd~~ 124 (356)
T 2w18_A 62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL-G----------------NLEIREIRALFCSSDDE 124 (356)
T ss_dssp SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE-C----------------SSSEEEEEEECC-----
T ss_pred cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeee-c----------------cccccceEEEEECCCcc
Confidence 467899999999999999999999999999999998654443321 1 124567899999999
Q ss_pred --CCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEc--CCCcEEEEEC-CCCceeeEEe-cc
Q 009059 317 --LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSI-NNGSCAGVFK-CQ 390 (545)
Q Consensus 317 --~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s--~dg~I~lwd~-~~~~~~~~~~-~~ 390 (545)
+.++++++.+ +++|++.+++ ++.++. .|+.|++|++ .+++.+..+. +.
T Consensus 125 ~~~~~l~s~g~~--~~v~~l~~g~------------------------lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~ 178 (356)
T 2w18_A 125 SEKQVLLKSGNI--KAVLGLTKRR------------------------LVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP 178 (356)
T ss_dssp -CCEEEEEEEEE--EEEEEETTTE------------------------EEEEESSSTTCEEEEEEECTTSCEEEEEEECC
T ss_pred ccccEEEeCCCe--EEEEecCCCc------------------------EEEecccCCCCcEEEEEECCCCceeeeeccCC
Confidence 8899998744 7778654332 332322 3556666666 2344444333 34
Q ss_pred CCeeEEEEeC---CCCEEEEEECCCeEEEEECCCCEEEEEecCCC---CCEEEEEEcCCCCEE------------EEEe-
Q 009059 391 SGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKLQGHK---NQVHSVCWNTSGEYL------------ASVS- 451 (545)
Q Consensus 391 ~~v~~l~~sp---~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~---~~I~~l~~sp~g~~l------------~s~s- 451 (545)
..+..++|++ ++..|++++.|++|+|||+++++++.++.+|. ..+.+++|+|+|.++ ++|+
T Consensus 179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~ 258 (356)
T 2w18_A 179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP 258 (356)
T ss_dssp CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence 5678888888 77899999999999999999999999998754 367788999999887 4466
Q ss_pred CCcEEEEEcCCCCCcceEEEE-----eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCee-EEE
Q 009059 452 DELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVS-SLA 524 (545)
Q Consensus 452 dg~I~vwd~~~~~~~~~i~~~-----~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~-~l~ 524 (545)
|++|++||..++ .++..+ .+|...+.+..++ +.++++++.|++|+|||+.+++++ ++.+|...+. .++
T Consensus 259 D~tIklWd~~tg---k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~va 333 (356)
T 2w18_A 259 VFQLIVINPKTT---LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVK 333 (356)
T ss_dssp CEEEEEEETTTT---EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEE
T ss_pred CcEEEEEECCCC---EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEE
Confidence 789999999887 555443 2444444444443 778999999999999999999988 7778887655 689
Q ss_pred EeCCCCEEEEEeCCCcEEEcC
Q 009059 525 ASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 525 ~spd~~~las~s~Dg~I~iWd 545 (545)
|+|||++|++|+.|++|||||
T Consensus 334 fSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 334 WSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp ECSSSSEEEEECTTSCEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEec
Confidence 999999999999999999997
No 123
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=2.2e-27 Score=253.11 Aligned_cols=301 Identities=10% Similarity=0.059 Sum_probs=244.6
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc--CCCeEEEEeccCCccEEEEEEcC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSP 315 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~--~~~~~~~~l~~h~~~V~~l~~sp 315 (545)
.+..+.+||..++... .++..+.. +.+++|+|||++|++++.|+.|++||+ .+++.+.++.. ...+..++|+|
T Consensus 157 ~d~~V~v~D~~t~~~~---~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp 231 (543)
T 1nir_A 157 DAGQIALVDGDSKKIV---KVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSK 231 (543)
T ss_dssp GGTEEEEEETTTCCEE---EEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECC
T ss_pred CCCeEEEEECCCceEE---EEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCC
Confidence 3567889998887654 44553323 899999999999999999999999999 88998888874 45689999999
Q ss_pred ----CCCEEEEEeC-CCeEEEEECCCCCeeeeEecc----------Cc-ccEEEEEEeCCCCcEEEEEcCCCcEEEEECC
Q 009059 316 ----SLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------HS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379 (545)
Q Consensus 316 ----~~~~l~t~s~-dg~I~vwd~~~~~~~~~~~~~----------h~-~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~ 379 (545)
++++|++++. +++|.|||..+.+. +..+.. |. ..+.++.++|++..++++...++.|.+||+.
T Consensus 232 ~~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~ 310 (543)
T 1nir_A 232 FKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK 310 (543)
T ss_dssp STTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECT
T ss_pred CcCCCCCEEEEEEccCCeEEEEecccccc-ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEec
Confidence 9999999885 89999999988764 555543 22 3789999999999999999999999999998
Q ss_pred CCceee--EEeccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecC----CCCCEEEEEEcCC-CCEEEEEe
Q 009059 380 NGSCAG--VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG----HKNQVHSVCWNTS-GEYLASVS 451 (545)
Q Consensus 380 ~~~~~~--~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~----h~~~I~~l~~sp~-g~~l~s~s 451 (545)
+.+.+. .+.....+..+.|+|+++++++++. ++.|.+||+.+++++..+.. |.+....+ ++|+ +.+++++.
T Consensus 311 ~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~ 389 (543)
T 1nir_A 311 DIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSH 389 (543)
T ss_dssp TSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEB
T ss_pred CCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEecc
Confidence 876554 4555566888999999998887765 89999999999999888764 55444444 4676 66777764
Q ss_pred --CCcEEEEEcCCCCC----cceEEEEeeCCCceEEEEEcCCCCEEEEEE-------cCCeEEEEeCCCCeEE-Ee----
Q 009059 452 --DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIG-------CYETLELWNMTENKTL-TL---- 513 (545)
Q Consensus 452 --dg~I~vwd~~~~~~----~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-------~dg~I~iwd~~~~~~~-~~---- 513 (545)
|++|.+||+.+... .+++.++..+...+..+.++|++++|+++. .+++|.+||+.+++.. ..
T Consensus 390 ~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~ 469 (543)
T 1nir_A 390 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA 469 (543)
T ss_dssp SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH
T ss_pred CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeech
Confidence 78999999987322 588999999988899999999999999987 2679999999988765 32
Q ss_pred -----ccCCCCeeEEEEeCCCCEEEEEe-----CCCcEEEcC
Q 009059 514 -----SAHDKLVSSLAASTVNGMVASAS-----HDKCVKIWK 545 (545)
Q Consensus 514 -----~~h~~~V~~l~~spd~~~las~s-----~Dg~I~iWd 545 (545)
..+...+..++|+|+|+.|+++. .|+.|.|||
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 470 EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp HHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred hhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 35678899999999999888763 479999997
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=3.1e-27 Score=244.62 Aligned_cols=262 Identities=11% Similarity=0.117 Sum_probs=221.1
Q ss_pred cceeeeeecCCceeeEEEE--eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 239 DRVGRSAEVGKGFTFTEFQ--LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~--~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
+..+++|+..++.....+. .+.+|.+.|.+++|+++++++++++.|+.|++||+++++.+..+..|...+.+++|+|+
T Consensus 143 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (433)
T 3bws_A 143 DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPI 222 (433)
T ss_dssp SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETT
T ss_pred CCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCC
Confidence 4568999998886543322 45689999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEe-CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEc-------CCCcEEEEECCCCceeeEEe
Q 009059 317 LSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-------NNSEIRYWSINNGSCAGVFK 388 (545)
Q Consensus 317 ~~~l~t~s-~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s-------~dg~I~lwd~~~~~~~~~~~ 388 (545)
++++++++ .|+.|++||+.+++. +..+.. ...+.+++|+|++..+++++. .|+.|++||+.+++.+..+.
T Consensus 223 ~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~ 300 (433)
T 3bws_A 223 RDLVYCSNWISEDISVIDRKTKLE-IRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG 300 (433)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEE-EEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEecCCCcEEEEECCCCcE-EEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc
Confidence 99886554 799999999987654 555554 456999999999876664443 58899999999999888887
Q ss_pred ccCCeeEEEEeCCCCEEEEE-ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-C--------------
Q 009059 389 CQSGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-------------- 452 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~-~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-d-------------- 452 (545)
+...+..++|+|+++.++++ +.++.|++||+.+++.+..+. +...+.+++|+|++++|++++ +
T Consensus 301 ~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~ 379 (433)
T 3bws_A 301 PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLV 379 (433)
T ss_dssp EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSS
T ss_pred CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCcccccccccccc
Confidence 77789999999998876555 679999999999998888776 778899999999999888877 2
Q ss_pred -CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc-CCeEEEEeCCC
Q 009059 453 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTE 507 (545)
Q Consensus 453 -g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~I~iwd~~~ 507 (545)
|.|++||+.++ ..+..+.. ...+..++|+|++++|++++. ++.|++|+++.
T Consensus 380 dg~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 380 LGKVYVIDTTTD---TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CCEEEEEETTTT---EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ceEEEEEECCCC---cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 48999999876 55666654 567999999999999998886 89999999864
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=1.8e-27 Score=245.84 Aligned_cols=283 Identities=12% Similarity=0.073 Sum_probs=230.4
Q ss_pred ccceeeeeec--CCceeeEEEEeecCCCCCeEEEEEcC--------------CCCEEEEEeCC------CcEEEEEcCCC
Q 009059 238 RDRVGRSAEV--GKGFTFTEFQLIPASTSKVESCHFSP--------------DGKLLATGGHD------KKAVLWCTESF 295 (545)
Q Consensus 238 ~d~~~~~~~~--~~~~~~~~~~~l~~H~~~V~~l~~sp--------------dg~~latg~~d------g~I~lwd~~~~ 295 (545)
.+..+++||+ .++..+. -..+.+|...+..+++++ .+..|+.++.+ +.|++||+..
T Consensus 91 ~~~~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g- 168 (415)
T 2hqs_A 91 YNVAYQLVDTGGAPGTVLA-QNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG- 168 (415)
T ss_dssp EEEEEEEEECSSSTTCEEE-EEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-
T ss_pred EEEEEEEEeCCCCCCCEEe-eeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-
Confidence 4558999999 8886432 245788988888888775 15566666554 7999999974
Q ss_pred eEEEEeccCCccEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCc
Q 009059 296 TVKSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 372 (545)
Q Consensus 296 ~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg---~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~ 372 (545)
.....+..|...|.+++|+|++++|++++.++ .|++||+.+++. ..+..|...+.+++|+|++..++++++.++.
T Consensus 169 ~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~--~~l~~~~~~~~~~~~spdg~~la~~~~~~g~ 246 (415)
T 2hqs_A 169 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSKLAFALSKTGS 246 (415)
T ss_dssp CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EEEECCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE--EEeecCCCcccCEEEcCCCCEEEEEEecCCC
Confidence 55677778999999999999999999999885 999999998764 4566788899999999999888878876654
Q ss_pred --EEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-CC--eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEE
Q 009059 373 --IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 447 (545)
Q Consensus 373 --I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg--~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l 447 (545)
|++||+.+++......+...+.+++|+|++..|++++. ++ .|++||+.+++. ..+..+...+.+++|+|+|++|
T Consensus 247 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l 325 (415)
T 2hqs_A 247 LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFM 325 (415)
T ss_dssp CEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEE
T ss_pred ceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEE
Confidence 99999998887655555667899999999999988886 44 788889988764 3455577789999999999999
Q ss_pred EEEe-C---CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCeEEEeccCCCCe
Q 009059 448 ASVS-D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLV 520 (545)
Q Consensus 448 ~s~s-d---g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~~~~~~~h~~~V 520 (545)
++++ + ..|++||+.++. . ..+..+. .+.+++|+|++++|++++.++ .|++||+.++....+..|.+.|
T Consensus 326 ~~~~~~~g~~~i~~~d~~~~~---~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v 400 (415)
T 2hqs_A 326 VMVSSNGGQQHIAKQDLATGG---V-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQV 400 (415)
T ss_dssp EEEEECSSCEEEEEEETTTCC---E-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEE
T ss_pred EEEECcCCceEEEEEECCCCC---E-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCC
Confidence 9887 4 389999998763 2 3344443 899999999999999998877 8999999988877899999999
Q ss_pred eEEEEeCCCC
Q 009059 521 SSLAASTVNG 530 (545)
Q Consensus 521 ~~l~~spd~~ 530 (545)
.+++|+|...
T Consensus 401 ~~~~~~~~~~ 410 (415)
T 2hqs_A 401 KFPAWSPYLH 410 (415)
T ss_dssp EEEEECCCCC
T ss_pred cCCccccccc
Confidence 9999999653
No 126
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.5e-27 Score=239.65 Aligned_cols=253 Identities=11% Similarity=0.102 Sum_probs=196.7
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC---------CCeEEEEec-cCCc
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE---------SFTVKSTLE-EHTQ 306 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~---------~~~~~~~l~-~h~~ 306 (545)
+.|..+++|+..++.....+. ...|.++.|+|+ +++++.|++|++|+.. +++.+..+. +|..
T Consensus 55 ~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (343)
T 3lrv_A 55 CEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSAN 126 (343)
T ss_dssp EETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSS
T ss_pred CCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCC
Confidence 457789999998887655544 466888899988 9999999999999765 444444443 6778
Q ss_pred cEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCeeeeEe-ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce
Q 009059 307 WITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 307 ~V~~l~~sp--~~~~l~t~s~dg~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~ 383 (545)
.|.+++|+| ++++|++++.||+|++||++++.. +..+ ..|...|.+++|+|++ .++++|+.||.|++||+++++.
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~ 204 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQ 204 (343)
T ss_dssp CEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTTS
T ss_pred CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCCC
Confidence 999999999 999999999999999999998775 4444 4456689999999996 4666999999999999999987
Q ss_pred e-eEEec--cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC---CCCCE--EEEEEcCCCCEEEEEe--CC
Q 009059 384 A-GVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---HKNQV--HSVCWNTSGEYLASVS--DE 453 (545)
Q Consensus 384 ~-~~~~~--~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~---h~~~I--~~l~~sp~g~~l~s~s--dg 453 (545)
+ ..+.. ...|.+++|+|++.+|++++ ++.|++||+++.+.+..+.. |...+ .+++|+|+|++|++++ |+
T Consensus 205 ~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~ 283 (343)
T 3lrv_A 205 ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN 283 (343)
T ss_dssp CCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTT
T ss_pred CccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCC
Confidence 7 55554 67899999999999999988 55999999998866544433 33344 3699999999999966 78
Q ss_pred cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcC---CCCEEEEEEcCCeEEEEeCCC
Q 009059 454 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP---TFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 454 ~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp---~~~~l~~~~~dg~I~iwd~~~ 507 (545)
.|++|++...... .. . ..+..+.|.+ +...+++++.|+.+.++-...
T Consensus 284 ~i~v~~~~~~~~~--~~-~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 284 SLTIYKFDKKTKN--WT-K----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEEEEEECTTTCS--EE-E----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred cEEEEEEcccccc--eE-e----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 9999999765321 11 1 4567788888 888999999999888875443
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=9.6e-27 Score=240.33 Aligned_cols=272 Identities=15% Similarity=0.171 Sum_probs=217.3
Q ss_pred CeEEEEEcCCCC-EEEEEe----CCC----cEEEEEc--CCCeEE--EEeccCCccEEEEEEcC--------------CC
Q 009059 265 KVESCHFSPDGK-LLATGG----HDK----KAVLWCT--ESFTVK--STLEEHTQWITDVRFSP--------------SL 317 (545)
Q Consensus 265 ~V~~l~~spdg~-~latg~----~dg----~I~lwd~--~~~~~~--~~l~~h~~~V~~l~~sp--------------~~ 317 (545)
.|...+|.+.|. ++++|+ .+| .|+|||+ .+++.+ ..+.+|...+..+++++ .+
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~ 143 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR 143 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 466677877665 566776 467 8999999 888877 55888888888877764 15
Q ss_pred CEEEEEeCC------CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC---CcEEEEECCCCceeeEEe
Q 009059 318 SRLATSSAD------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSCAGVFK 388 (545)
Q Consensus 318 ~~l~t~s~d------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d---g~I~lwd~~~~~~~~~~~ 388 (545)
..++.++.+ +.|++||+... ..+.+.+|...+.+++|+|++..++ +++.+ ..|++||+.++++.....
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g~--~~~~l~~~~~~v~~~~~Spdg~~la-~~s~~~~~~~i~~~d~~tg~~~~l~~ 220 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDGY--NQFVVHRSPQPLMSPAWSPDGSKLA-YVTFESGRSALVIQTLANGAVRQVAS 220 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSC--SCEEEEEESSCEEEEEECTTSSEEE-EEECTTSSCEEEEEETTTCCEEEEEC
T ss_pred CEEEEEEecCCCCccceEEEEcCCCC--CCEEEeCCCCcceeeEEcCCCCEEE-EEEecCCCcEEEEEECCCCcEEEeec
Confidence 666666654 79999999743 2677788999999999999987666 55545 499999999998876666
Q ss_pred ccCCeeEEEEeCCCCEEEEE-ECCC--eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CC--cEEEEEcC
Q 009059 389 CQSGATQMRFQPRLGRILAA-AIEN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIG 461 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~-~~dg--~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg--~I~vwd~~ 461 (545)
+...+.+++|+|++..|+.. +.++ .|++||+.+++. ..+..|...+.+++|+|+|++|++++ ++ .|++||+.
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 299 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence 66779999999999988844 4454 599999998876 56777888999999999999988877 34 68888987
Q ss_pred CCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC---CeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 462 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 462 ~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d---g~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
++. ...+..+...+..++|+|++++|++++.+ ..|++||+.+++...+..|. .+.+++|+|+|++|++++.|
T Consensus 300 ~~~----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~ 374 (415)
T 2hqs_A 300 GGA----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQ 374 (415)
T ss_dssp SSC----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEE
T ss_pred CCC----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcC
Confidence 763 23344566788999999999999988875 48999999999887776665 89999999999999998887
Q ss_pred C---cEEEcC
Q 009059 539 K---CVKIWK 545 (545)
Q Consensus 539 g---~I~iWd 545 (545)
+ .|++||
T Consensus 375 ~~~~~l~~~d 384 (415)
T 2hqs_A 375 GMGSVLNLVS 384 (415)
T ss_dssp TTEEEEEEEE
T ss_pred CCccEEEEEE
Confidence 7 688875
No 128
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=5.3e-27 Score=240.50 Aligned_cols=224 Identities=11% Similarity=0.096 Sum_probs=172.0
Q ss_pred cccceeeeeecCCceee--EEEEeecCCCCCeEEEEEcC--------CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCc
Q 009059 237 PRDRVGRSAEVGKGFTF--TEFQLIPASTSKVESCHFSP--------DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ 306 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~--~~~~~l~~H~~~V~~l~~sp--------dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~ 306 (545)
+.|..+|+|+...+... ..+..+.+|.+.|++++|+| |+++||+|+.|++|+|||+.++..+..+..|..
T Consensus 108 ~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~ 187 (393)
T 4gq1_A 108 CQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSS 187 (393)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSS
T ss_pred eCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCC
Confidence 45788999998887543 34567899999999999998 889999999999999999999888888889999
Q ss_pred cEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeee------------------------eEeccCcccEEEEEEe-CCC
Q 009059 307 WITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSL------------------------RTFTGHSTTVMSLDFH-PSK 360 (545)
Q Consensus 307 ~V~~l~~sp~~~-~l~t~s~dg~I~vwd~~~~~~~~------------------------~~~~~h~~~V~~l~~~-p~~ 360 (545)
.|.+++|+|++. +|++++.|++|++||+.++.... ....+|...|.++.|. +++
T Consensus 188 ~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg 267 (393)
T 4gq1_A 188 PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG 267 (393)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTT
T ss_pred CcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCC
Confidence 999999999874 89999999999999998764311 1124677889999997 565
Q ss_pred CcEEEEEcCCCcEEEEECCCCceeeEEecc-------------------CCeeEEEEeC-CCCEEE-EEECCCeEEEEEC
Q 009059 361 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQMRFQP-RLGRIL-AAAIENYISILDV 419 (545)
Q Consensus 361 ~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-------------------~~v~~l~~sp-~~~~l~-~~~~dg~I~i~d~ 419 (545)
..+++++.|+.+++||+..+.....+... .......+.+ .++.++ +++.||.|++||+
T Consensus 268 -~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~ 346 (393)
T 4gq1_A 268 -SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINT 346 (393)
T ss_dssp -CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEET
T ss_pred -CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEEC
Confidence 45669999999999999876654433211 1122233444 344444 4556999999999
Q ss_pred CCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcC
Q 009059 420 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG 461 (545)
Q Consensus 420 ~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~ 461 (545)
.++.....+..|...|.+++|+|+|++||+++++.+.+|.+.
T Consensus 347 ~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 347 YEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp TCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred CCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 999888888889999999999999999999998878888764
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=1.4e-25 Score=219.47 Aligned_cols=222 Identities=11% Similarity=0.089 Sum_probs=164.1
Q ss_pred EEeecCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCeEEEE-eccCCccEEEEEEcCCCCEEEEEeCCCeEE
Q 009059 256 FQLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVR 330 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spd----g~~latg~~dg~I~lwd~~~~~~~~~-l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~ 330 (545)
+..=.-|.+.|.+++|+|| +.++++++.+ +.+|++.+++.+.. ..+| |+.|+
T Consensus 104 ~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~---------------------d~~V~ 160 (356)
T 2w18_A 104 VALGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLS---------------------DQQVE 160 (356)
T ss_dssp EEECSSSEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSST---------------------TCEEE
T ss_pred eeeccccccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCC---------------------CCcEE
Confidence 3333446668999999999 9999998854 77887654444433 2333 55566
Q ss_pred EEECCCCCeeeeEeccCcccEEEEEEeC--CCCcEEEEEcCCCcEEEEECCCCceeeEEecc----CCeeEEEEeCCCCE
Q 009059 331 VWDTENPDYSLRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----SGATQMRFQPRLGR 404 (545)
Q Consensus 331 vwd~~~~~~~~~~~~~h~~~V~~l~~~p--~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~----~~v~~l~~sp~~~~ 404 (545)
+|++......+..+.+|...+..++|++ ....+|++++.|++|++||+.++++++++..+ ..+.+++|+|++..
T Consensus 161 ~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~ 240 (356)
T 2w18_A 161 VMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLL 240 (356)
T ss_dssp EEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEE
T ss_pred EEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCE
Confidence 6665332223455667888888888887 23467779999999999999999999999732 24677899999877
Q ss_pred E------------EEEECCCeEEEEECCCCEEEEEe-----cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCc
Q 009059 405 I------------LAAAIENYISILDVETQVCRLKL-----QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 466 (545)
Q Consensus 405 l------------~~~~~dg~I~i~d~~~~~~~~~~-----~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~ 466 (545)
+ ++++.|++|++||..+++.+..+ .+|...+.+..++ +.++++++ |++|+|||+.++
T Consensus 241 lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tG--- 315 (356)
T 2w18_A 241 FIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLG--- 315 (356)
T ss_dssp EEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTC---
T ss_pred EEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCC---
Confidence 6 34667899999999999887765 3676666555554 88899998 999999999988
Q ss_pred ceEEEEeeCCCceE-EEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 467 ECIHELSCTGNKFH-SCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 467 ~~i~~~~~~~~~v~-~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
+++.++.+|...+. .++|+|++++|++|+.|++|+|||+
T Consensus 316 k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 316 QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 88899988877655 5899999999999999999999995
No 130
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=3.1e-24 Score=215.38 Aligned_cols=268 Identities=10% Similarity=0.029 Sum_probs=216.2
Q ss_pred CCeEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEE-eCCCeEEEEECC
Q 009059 264 SKVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTE 335 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~-------dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~-s~dg~I~vwd~~ 335 (545)
..+..++|+|++++|++++. ++.|.+||..+++.+..+... ..+..++|+|++++++++ ..++.|.+||..
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 45788999999999888874 568999999999988887643 447889999999966555 557999999999
Q ss_pred CCCeeeeEeccCcc---------cEEEEEEeCCCCcEEEEE-cCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCE
Q 009059 336 NPDYSLRTFTGHST---------TVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGR 404 (545)
Q Consensus 336 ~~~~~~~~~~~h~~---------~V~~l~~~p~~~~ll~s~-s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~ 404 (545)
+++. +..+..+.. .+.+++|+|+++.+++++ +.++.|.+||+.+++.+..+. ....+..++|+|++++
T Consensus 120 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 120 TGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 8775 455544332 278999999998777666 458899999999999988887 4455889999999999
Q ss_pred EEEEECCCeEEEEECCCCEEEEEecC----CCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCc
Q 009059 405 ILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNK 478 (545)
Q Consensus 405 l~~~~~dg~I~i~d~~~~~~~~~~~~----h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~ 478 (545)
++++..++.|.+||+.+++.+..+.. +...+..++|+|++++++++. ++.|.+||+.++ ..+..+....
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~-- 273 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG---NILAKVAAPE-- 273 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC---CEEEEEECSS--
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCC--
Confidence 99999999999999999988877664 556788999999999877776 579999999887 4455554333
Q ss_pred eEEEEEcCCCCEEEEEE-cCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 479 FHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 479 v~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
...++|+|++++++++. .++.|.+||+.+++.+........+.+++|+|++++|+++..+
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 35689999999877777 5789999999999988544455678999999999977766654
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=3.2e-25 Score=236.39 Aligned_cols=268 Identities=9% Similarity=0.060 Sum_probs=215.1
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCCeeeeEeccC
Q 009059 270 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT--ENPDYSLRTFTGH 347 (545)
Q Consensus 270 ~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~--~~~~~~~~~~~~h 347 (545)
+|+|++.++++++.|+.|.+||..+++++.++..+.. +.+++|+|++++|++++.|++|++||+ .+.+. +..+. +
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~-~~~i~-~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK-VAEIK-I 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE-EEEEE-C
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE-EEEEe-c
Confidence 4789999999999999999999999999999874433 899999999999999999999999999 66553 56666 4
Q ss_pred cccEEEEEEeC----CCCcEEEEEcCCCcEEEEECCCCceeeEEecc------------CCeeEEEEeCCCCEEEEEE-C
Q 009059 348 STTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQPRLGRILAAA-I 410 (545)
Q Consensus 348 ~~~V~~l~~~p----~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~------------~~v~~l~~sp~~~~l~~~~-~ 410 (545)
...+..++|+| +++.+++++..+++|.+||..+++++..+... ..+..+.+++++..+++.. .
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 55689999999 98877766667899999999999998887642 2578999999877766555 5
Q ss_pred CCeEEEEECCCCEEEE--EecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEee----CCCceEEE
Q 009059 411 ENYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSC 482 (545)
Q Consensus 411 dg~I~i~d~~~~~~~~--~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~----~~~~v~~~ 482 (545)
++.|.+||+.+.+.+. .+. +...+..+.|+|+|++|++++ +++|.+||+.++ +++..+.. |......+
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSBCCTTCEEE
T ss_pred CCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---eEEEeeccCCCCCCCCCccc
Confidence 7999999998754322 343 567788999999999877665 789999999987 66666653 43333333
Q ss_pred EEcCCCCEEEEEE--cCCeEEEEeCCC-------CeEE-EeccCCCCeeEEEEeCCCCEEEEEe-------CCCcEEEcC
Q 009059 483 VFHPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASAS-------HDKCVKIWK 545 (545)
Q Consensus 483 ~~sp~~~~l~~~~--~dg~I~iwd~~~-------~~~~-~~~~h~~~V~~l~~spd~~~las~s-------~Dg~I~iWd 545 (545)
++|++..+++.+ .+++|.+||+.+ ++++ ++..|...+..++|+|++++|++++ .+++|.|||
T Consensus 377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 455 (543)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence 578744444443 478999999988 7777 7778888899999999999999987 277999996
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=1.3e-24 Score=216.45 Aligned_cols=274 Identities=7% Similarity=0.133 Sum_probs=206.2
Q ss_pred EEEcCCCCE-EEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeeeEecc
Q 009059 269 CHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG 346 (545)
Q Consensus 269 l~~spdg~~-latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~-dg~I~vwd~~~~~~~~~~~~~ 346 (545)
..|.+++++ +++++.++.|.+||..+++.+..+..+...+ +++|+|++++|++++. ++.|.+||+.++......+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345565554 6777889999999999999988887777777 9999999997776665 889999999987653556666
Q ss_pred CcccEEEEEEeCCCCcEEEEEcCC-C--cEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-CCe-EEEEECCC
Q 009059 347 HSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY-ISILDVET 421 (545)
Q Consensus 347 h~~~V~~l~~~p~~~~ll~s~s~d-g--~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~-I~i~d~~~ 421 (545)
+..+..+++|+|++..++ ++..+ + .|++||+.+++.+..+........++|+|++++++++.. ++. |.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 666666699999987777 55444 3 899999999999988888788999999999987776654 578 99999875
Q ss_pred CEEE----EEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE
Q 009059 422 QVCR----LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 495 (545)
Q Consensus 422 ~~~~----~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~ 495 (545)
...+ .........+..++|+|+|++++++. ++.|++||+.++.....+..+.. ...+..++|+|++++|+++.
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLT 239 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEEC
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEE
Confidence 3222 12223456689999999999766655 77999999988744222555553 46678899999999887776
Q ss_pred c-CCeEEEEeCCCCeEE---EeccC----CC---CeeEEEEeCCCCEEEEEeC-CCcEEEcC
Q 009059 496 C-YETLELWNMTENKTL---TLSAH----DK---LVSSLAASTVNGMVASASH-DKCVKIWK 545 (545)
Q Consensus 496 ~-dg~I~iwd~~~~~~~---~~~~h----~~---~V~~l~~spd~~~las~s~-Dg~I~iWd 545 (545)
. ++.|.+||+.+++.. .+..+ .. ....++|+||+++|++++. ++.|.|||
T Consensus 240 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 240 ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 4 568999999998873 22211 22 2355899999998876655 56999996
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=3.4e-24 Score=213.81 Aligned_cols=266 Identities=9% Similarity=0.134 Sum_probs=196.5
Q ss_pred EEEEEeCCCcEEEEEcC-CC--eEEEEeccCCccEEEEEEcCCCCEEEEEeCC-CeEEEEECC--CCCe-eeeEeccCcc
Q 009059 277 LLATGGHDKKAVLWCTE-SF--TVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTE--NPDY-SLRTFTGHST 349 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~-~~--~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d-g~I~vwd~~--~~~~-~~~~~~~h~~ 349 (545)
++++++.|+.|++|++. ++ +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|++. ++.. .+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 34444789999999995 33 333333 477789999999999999998886 999999997 4443 233444333
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEECC---CCceeeEEeccCCeeEEEEeCCCCEEEEEE-CCCeEEEEECCC-CEE
Q 009059 350 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVET-QVC 424 (545)
Q Consensus 350 ~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~---~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~-~~~ 424 (545)
.+..++|+|++..+++++..++.|++||+. ..+....+.....+.+++|+|++.++++++ .++.|.+||+.+ ++.
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 789999999998888777778999999994 444555566666789999999999888888 799999999987 644
Q ss_pred EE----EecC-CCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCC-CcceEEEEeeC------CCceEEEEEcCCCCE
Q 009059 425 RL----KLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELSCT------GNKFHSCVFHPTFPS 490 (545)
Q Consensus 425 ~~----~~~~-h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~-~~~~i~~~~~~------~~~v~~~~~sp~~~~ 490 (545)
.. .+.. ....+.+++|+|++++|++++ ++.|.+|++.... .......+... ...+..++|+|++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence 32 2222 345789999999999776554 7899999996421 11223232211 235678999999998
Q ss_pred EEEEE-cCCeEEEEeCC--CC--eEE-EeccCCCCeeEEEEeCCCCEEEEEe-CCCcEEEcC
Q 009059 491 LLVIG-CYETLELWNMT--EN--KTL-TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 545 (545)
Q Consensus 491 l~~~~-~dg~I~iwd~~--~~--~~~-~~~~h~~~V~~l~~spd~~~las~s-~Dg~I~iWd 545 (545)
|+++. .++.|.+||+. ++ +.+ .+..+. .+.+++|+|++++|++++ .|+.|.+|+
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEE
Confidence 88666 67899999998 33 333 333343 489999999999888887 689999993
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=7.2e-25 Score=243.07 Aligned_cols=274 Identities=14% Similarity=0.089 Sum_probs=212.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CC-----cEEEEEcCCCeEEEEeccCCc------------------------cEEEEE
Q 009059 263 TSKVESCHFSPDGKLLATGGH-DK-----KAVLWCTESFTVKSTLEEHTQ------------------------WITDVR 312 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~-dg-----~I~lwd~~~~~~~~~l~~h~~------------------------~V~~l~ 312 (545)
...|.+++|+|||++|++++. |+ .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 346899999999999999998 88 899999999988777765433 378999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCC--eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc
Q 009059 313 FSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 390 (545)
Q Consensus 313 ~sp~~~~l~t~s~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~ 390 (545)
|+|||++|++++. +.|.+||+.++. . ...+..|...+.+++|+|+|+.++++ + ++.|++||+.+++........
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~-~~~l~~~~~~~~~~~~SPDG~~la~~-~-~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAA-VRQLTHGEGFATDAKLSPKGGFVSFI-R-GRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTS-CCBCCCSSSCEEEEEECTTSSEEEEE-E-TTEEEEEETTTTEEEECCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcce-EEEcccCCcccccccCCCCCCEEEEE-e-CCcEEEEecCCCCEEEeccCC
Confidence 9999999999986 899999998762 2 45667788889999999999776644 4 568999999988766544332
Q ss_pred CC-----------------eeEEEEeCCCCEEEEEECCC---------------------------------eEEEEECC
Q 009059 391 SG-----------------ATQMRFQPRLGRILAAAIEN---------------------------------YISILDVE 420 (545)
Q Consensus 391 ~~-----------------v~~l~~sp~~~~l~~~~~dg---------------------------------~I~i~d~~ 420 (545)
.. +..+.|+|++.+|++++.|+ .|++||+.
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 271 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA 271 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence 22 47799999999999987765 88999998
Q ss_pred C-CEEEEEec--CCCCCEEEEEEcCCCCEEEEEe------CCcEEEEEcCCCCCcceEEEEeeCCC----ceEEEEEcCC
Q 009059 421 T-QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS------DELVRVWSIGSGSKGECIHELSCTGN----KFHSCVFHPT 487 (545)
Q Consensus 421 ~-~~~~~~~~--~h~~~I~~l~~sp~g~~l~s~s------dg~I~vwd~~~~~~~~~i~~~~~~~~----~v~~~~~sp~ 487 (545)
+ ++...... .|...+..++| |||++|+++. +..|++||+.++. +...+..+.. .+..++|+|+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~spd 347 (741)
T 2ecf_A 272 EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---QRVLAHETSPTWVPLHNSLRFLDD 347 (741)
T ss_dssp TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---EEEEEEEECSSCCCCCSCCEECTT
T ss_pred CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---eEEEEEcCCCCcCCcCCceEECCC
Confidence 8 77654443 37778999999 9999988764 2379999998873 3444433332 3468899999
Q ss_pred CCEEEEEEcCCeEEEEeC--CCCeEEEeccCCCCeeEE-EEeCCCCEEEE-EeCCC--cEEEcC
Q 009059 488 FPSLLVIGCYETLELWNM--TENKTLTLSAHDKLVSSL-AASTVNGMVAS-ASHDK--CVKIWK 545 (545)
Q Consensus 488 ~~~l~~~~~dg~I~iwd~--~~~~~~~~~~h~~~V~~l-~~spd~~~las-~s~Dg--~I~iWd 545 (545)
++++++++.++.++||.+ .+. ...+..|...|..+ .|+|+++.|+. ++.|+ .++||+
T Consensus 348 g~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 348 GSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp SCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred CeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 998888888886666654 444 55777888888887 59999997765 44455 888884
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=1.8e-23 Score=208.54 Aligned_cols=289 Identities=11% Similarity=0.074 Sum_probs=204.6
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEEcC--CCe--EEEEeccCCccEEEEE
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTE--SFT--VKSTLEEHTQWITDVR 312 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~d-g~I~lwd~~--~~~--~~~~l~~h~~~V~~l~ 312 (545)
.+..+++|+......+..+..+ .|...+.+++|+|+|++|++++.+ +.|.+|++. +++ .+..+..+. .+.+++
T Consensus 13 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 90 (343)
T 1ri6_A 13 ESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHIS 90 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEE
T ss_pred CCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEE
Confidence 3567888887533333334333 477789999999999999988876 999999997 444 344554444 789999
Q ss_pred EcCCCCEEEEEeC-CCeEEEEECCCCC--eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-CceeeE--
Q 009059 313 FSPSLSRLATSSA-DRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV-- 386 (545)
Q Consensus 313 ~sp~~~~l~t~s~-dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~-~~~~~~-- 386 (545)
|+|++++|++++. ++.|.+||+.++. .....+. ....+.+++|+|++..+++++..++.|++||+.+ ++....
T Consensus 91 ~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 169 (343)
T 1ri6_A 91 TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP 169 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE
T ss_pred EcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecc
Confidence 9999998877765 8899999995222 1233444 3346889999999987876665899999999987 654322
Q ss_pred --Ee--ccCCeeEEEEeCCCCEEEEEE-CCCeEEEEECCC--CEE--EEEec---CC---CCCEEEEEEcCCCCEEEEEe
Q 009059 387 --FK--CQSGATQMRFQPRLGRILAAA-IENYISILDVET--QVC--RLKLQ---GH---KNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 387 --~~--~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~--~~~--~~~~~---~h---~~~I~~l~~sp~g~~l~s~s 451 (545)
+. ....+..++|+|++.++++++ .++.|.+||+.. ++. ...+. .. ...+..++|+|+|++|+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~ 249 (343)
T 1ri6_A 170 AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD 249 (343)
T ss_dssp EEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE
T ss_pred cccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEe
Confidence 22 234688899999999887776 689999999953 322 22222 11 24677899999999887554
Q ss_pred --CCcEEEEEcCCC-CCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCCeEEEE--eCCCCeEE--EeccCCCCeeEE
Q 009059 452 --DELVRVWSIGSG-SKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELW--NMTENKTL--TLSAHDKLVSSL 523 (545)
Q Consensus 452 --dg~I~vwd~~~~-~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~I~iw--d~~~~~~~--~~~~h~~~V~~l 523 (545)
++.|.+||+... .....+..+..+.. +..++|+|++++|++++ .++.|.+| |..+++.. ..........++
T Consensus 250 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i 328 (343)
T 1ri6_A 250 RTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWV 328 (343)
T ss_dssp TTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEE
T ss_pred cCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeE
Confidence 789999999832 12244555554444 88999999999998888 57899999 55566543 222223567788
Q ss_pred EEeCCCC
Q 009059 524 AASTVNG 530 (545)
Q Consensus 524 ~~spd~~ 530 (545)
+|.++.+
T Consensus 329 ~~~~~~~ 335 (343)
T 1ri6_A 329 VVNAHEG 335 (343)
T ss_dssp EEEEEC-
T ss_pred EEEcccC
Confidence 8887654
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=2e-24 Score=210.17 Aligned_cols=257 Identities=13% Similarity=0.089 Sum_probs=200.6
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CeEEEEeccC-CccEEEEE
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEH-TQWITDVR 312 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~-~~~~~~l~~h-~~~V~~l~ 312 (545)
....+..+++|+..++.. ..+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++....+..| ...|.+++
T Consensus 17 ~~~~~~~i~~~d~~~~~~----~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKM----RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHG 91 (297)
T ss_dssp -CCCCEEEEEEETTTTEE----EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred CCCcceeEEEEeCCCCce----eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceE
Confidence 345678899999988763 34556889999999999999999987 78999999999 8877777666 47789999
Q ss_pred EcCCCCEEEEEe--CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEEC--CCCceeeEEe
Q 009059 313 FSPSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFK 388 (545)
Q Consensus 313 ~sp~~~~l~t~s--~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~--~~~~~~~~~~ 388 (545)
|+|++++|++++ .++.+.||.++........+..+. .+..++|+|++..+++++..++.+++|++ .+++......
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 170 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH 170 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc
Confidence 999999999998 334555555432222244444443 48999999999888878888998999985 4555544445
Q ss_pred ccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECC-CCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-C-----------Cc
Q 009059 389 CQSGATQMRFQPRLGRILAAAI-ENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-----------EL 454 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~-~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-d-----------g~ 454 (545)
....+.++.|+|++..+++++. ++.+.+|++. .+.....+..|...+.+++|+|++++|++++ + ..
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence 5567999999999998887774 8888999876 4555667777888899999999999998877 4 46
Q ss_pred EEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC
Q 009059 455 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 498 (545)
Q Consensus 455 I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 498 (545)
|++||+.++.. ..+..+..+...+..++|+|++++|++++.+.
T Consensus 251 l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 251 VQLMDMDGGNV-ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEETTSCSC-EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEecCCCCc-eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999987643 44555667788899999999999998887765
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=4.7e-24 Score=207.53 Aligned_cols=252 Identities=11% Similarity=0.093 Sum_probs=195.4
Q ss_pred EeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CCeeeeEeccC-cccEEEEEEeC
Q 009059 281 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDYSLRTFTGH-STTVMSLDFHP 358 (545)
Q Consensus 281 g~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~-~~~~~~~~~~h-~~~V~~l~~~p 358 (545)
++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|++||+.+ +.. ......+ ...+.+++|+|
T Consensus 18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-EKVDTGFATICNNDHGISP 94 (297)
T ss_dssp CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-EECCCTTCCCBCSCCEECT
T ss_pred CCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-eEeccccccccccceEECC
Confidence 457899999999998876 4556889999999999999999986 78999999998 654 4444445 46789999999
Q ss_pred CCCcEEEEEc-CC--CcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEE-EEECCCeEEEEEC--CCCEEEEEecCCC
Q 009059 359 SKEDLLCSCD-NN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL-AAAIENYISILDV--ETQVCRLKLQGHK 432 (545)
Q Consensus 359 ~~~~ll~s~s-~d--g~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~-~~~~dg~I~i~d~--~~~~~~~~~~~h~ 432 (545)
++..+++++. .+ ..|..|++.++. ...+.....+..++|+|++..++ ++..++.+.+|++ .++. ...+..+.
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~ 172 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGE 172 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSS
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCC
Confidence 9877665442 23 445555655554 34444455688999999999887 5667898888885 4444 45566688
Q ss_pred CCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-----------Ce
Q 009059 433 NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----------ET 499 (545)
Q Consensus 433 ~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----------g~ 499 (545)
..+.+++|+|++++|+.++ ++.+++|++.... ..+..+..+...+..+.|+|++++|++++.+ ..
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECCCC--CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence 8999999999999887665 7789999886321 3455666677789999999999999988876 46
Q ss_pred EEEEeCCCCeEE---EeccCCCCeeEEEEeCCCCEEEEEeCCC
Q 009059 500 LELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 500 I~iwd~~~~~~~---~~~~h~~~V~~l~~spd~~~las~s~Dg 539 (545)
|++||+.+++.. .+.+|...+.+++|+|++++|++++.|.
T Consensus 251 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 251 VQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999999988654 3447888999999999999998887653
No 138
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=1e-23 Score=209.73 Aligned_cols=262 Identities=11% Similarity=0.072 Sum_probs=206.3
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEeccCCc--cEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCCeeeeEec-cC----
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT-GH---- 347 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~h~~--~V~~l~~sp~~~~l~-t~s~dg~I~vwd~~~~~~~~~~~~-~h---- 347 (545)
++|++++.++.|.+||+.+++.+..+..... .+.+++|+|++++++ ++..++.|.+||+.+++. +..+. ++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-EeeEEcCCcccc
Confidence 4789999999999999999998887763322 478899999998765 555678999999988765 44333 22
Q ss_pred cccEEEEEEeCCCCcEEEEEc-----------CCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEE
Q 009059 348 STTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 416 (545)
Q Consensus 348 ~~~V~~l~~~p~~~~ll~s~s-----------~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i 416 (545)
...+.+++|+|+++.++++.. .++.|++||+.+++.+..+.....+..++|+|++++++++ ++.|++
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence 225778999999877665431 4799999999999988888877778899999999988887 789999
Q ss_pred EECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CC-----------------------cEEEEEcCCCCCcceEEE
Q 009059 417 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE-----------------------LVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 417 ~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg-----------------------~I~vwd~~~~~~~~~i~~ 471 (545)
||+.+++.+..+..+... ..+.|+|++.+|+... ++ .|.+||+.+++.. ...
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~ 235 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--MRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--EEE
T ss_pred EECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce--Eee
Confidence 999999888777654311 1237899998766554 22 3689999887432 344
Q ss_pred EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 472 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 472 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+..+...+..++|+|++++++++ ++.|++||+.+++.+........+.+++|+|++++|++++.|+.|++||
T Consensus 236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 55566778899999999998888 6899999999998875444556789999999999999999999999996
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=6.9e-23 Score=203.96 Aligned_cols=284 Identities=11% Similarity=0.083 Sum_probs=209.3
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCeE-EEEeccCCccEEEEEEcC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTV-KSTLEEHTQWITDVRFSP 315 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~-dg~I~lwd~~~~~~-~~~l~~h~~~V~~l~~sp 315 (545)
.+..+++|+..++.... .+..+...+ +++|+|+|++|++++. ++.|.+||..+++. ...+..+..+..+++|+|
T Consensus 18 ~~~~v~~~d~~~~~~~~---~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~ 93 (331)
T 3u4y_A 18 HLRRISFFSTDTLEILN---QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP 93 (331)
T ss_dssp GGTEEEEEETTTCCEEE---EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT
T ss_pred CCCeEEEEeCcccceee---eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC
Confidence 35678899988876543 334556667 9999999997766665 88999999999887 777777777666699999
Q ss_pred CCCEEEEEeCCC---eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCc-EEEEECCCCcee-----eE
Q 009059 316 SLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCA-----GV 386 (545)
Q Consensus 316 ~~~~l~t~s~dg---~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~-I~lwd~~~~~~~-----~~ 386 (545)
++++|+++..++ .|.+||+.+++. +..+.. ...+.+++|+|+++.+++++..++. |.+|++.....+ ..
T Consensus 94 dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~ 171 (331)
T 3u4y_A 94 DDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEF 171 (331)
T ss_dssp TSSEEEECCCSSSSCEEEEEETTTTEE-EEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEE
T ss_pred CCCEEEEecCCCCcccEEEEECCCCCe-EEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcc
Confidence 999999655553 899999987764 555543 4457999999999888877777788 999998754332 22
Q ss_pred EeccCCeeEEEEeCCCCEEEEEE-CCCeEEEEECCCCEE---EEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEc
Q 009059 387 FKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVC---RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSI 460 (545)
Q Consensus 387 ~~~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~---~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~ 460 (545)
+.....+..++|+|+++++++++ .++.|.+||+.+++. +..+.. ...+..++|+|+|++|+++. ++.|.+||+
T Consensus 172 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~ 250 (331)
T 3u4y_A 172 ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ 250 (331)
T ss_dssp ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence 33445688999999998777766 488999999998876 666664 46778999999999877765 668999999
Q ss_pred CCCCCcceEEEEeeC----CC---ceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEEEeccCCCCeeEEEEeCCC
Q 009059 461 GSGSKGECIHELSCT----GN---KFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVN 529 (545)
Q Consensus 461 ~~~~~~~~i~~~~~~----~~---~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~ 529 (545)
.+++. ..+..+... .. ....++|+|++++|++++.+ +.|.+||+.+............-....++|+.
T Consensus 251 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 251 LSGTL-SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp TTTEE-EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECTTCCCBSCEEECCCC-
T ss_pred CCCce-eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccceecccccCCeEEECCcc
Confidence 87632 123333322 11 12458999999998877765 49999999887765555444433334445554
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=1.6e-23 Score=232.20 Aligned_cols=272 Identities=11% Similarity=0.066 Sum_probs=204.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe--EEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 342 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~--~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~ 342 (545)
.|.+++|||||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++ ++.|++||+.++.. ..
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-~~ 186 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-MQ 186 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-EE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-EE
Confidence 3889999999999999886 999999999873 4456777888999999999999999987 46899999987653 33
Q ss_pred EeccCccc----------------EEEEEEeCCCCcEEEEEcCCC--------------------------------cEE
Q 009059 343 TFTGHSTT----------------VMSLDFHPSKEDLLCSCDNNS--------------------------------EIR 374 (545)
Q Consensus 343 ~~~~h~~~----------------V~~l~~~p~~~~ll~s~s~dg--------------------------------~I~ 374 (545)
....+... +.++.|+|+++.++++...++ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 33333322 478999999988775543221 789
Q ss_pred EEECCC-CceeeEEe---ccCCeeEEEEeCCCCEEEEEEC-----CCeEEEEECCCCEEEEEecCCCC----CEEEEEEc
Q 009059 375 YWSINN-GSCAGVFK---CQSGATQMRFQPRLGRILAAAI-----ENYISILDVETQVCRLKLQGHKN----QVHSVCWN 441 (545)
Q Consensus 375 lwd~~~-~~~~~~~~---~~~~v~~l~~sp~~~~l~~~~~-----dg~I~i~d~~~~~~~~~~~~h~~----~I~~l~~s 441 (545)
+||+.+ ++...... +...+..++| |++..|+++.. +..|++||+.+++....+..+.. .+..++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999988 77654432 3345789999 99999988764 56899999999987776665443 45689999
Q ss_pred CCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEE-EEcCCCCEEEEEEcCC---eEEEEeCCC-Ce-EEEec
Q 009059 442 TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYE---TLELWNMTE-NK-TLTLS 514 (545)
Q Consensus 442 p~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~-~~sp~~~~l~~~~~dg---~I~iwd~~~-~~-~~~~~ 514 (545)
|+|++++++. |+.++||.+.... . ...+..+...+..+ .|+|+++.|++.+.++ .++||++.. +. ...+.
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred CCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence 9999888888 8888888776321 3 56666777778887 5999999887666544 788998753 33 33444
Q ss_pred cCCCCeeEEEEeCCCCEEEEEeCC----CcEEEc
Q 009059 515 AHDKLVSSLAASTVNGMVASASHD----KCVKIW 544 (545)
Q Consensus 515 ~h~~~V~~l~~spd~~~las~s~D----g~I~iW 544 (545)
. ...+..++|+||+++|+....+ ..+.+|
T Consensus 423 ~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~ 455 (741)
T 2ecf_A 423 K-APGMHSASFARNASVYVDSWSNNSTPPQIELF 455 (741)
T ss_dssp C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence 4 6678899999999988766443 345554
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=2.6e-24 Score=237.87 Aligned_cols=275 Identities=14% Similarity=0.154 Sum_probs=206.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCc---cEEEEEEcCCCCEEEEEeCC---------CeEEEE
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSAD---------RTVRVW 332 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~---~V~~l~~sp~~~~l~t~s~d---------g~I~vw 332 (545)
.+.+++|+|||+++++ +.||.|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.|.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 3667999999998877 7899999999999988888877765 49999999999999999764 788899
Q ss_pred ECCCCCe-eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCe-----------------
Q 009059 333 DTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGA----------------- 393 (545)
Q Consensus 333 d~~~~~~-~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v----------------- 393 (545)
|+.++.. .+....+|...+..++|+|+|+.++++. ++.|++||+.+++....... ...+
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEE--CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 9998763 1222234455588999999998777544 37999999998877665543 2222
Q ss_pred -eEEEEeCCCCEEEEEECCC----------------------------------eEEEEECCCCEEEEEecCC------C
Q 009059 394 -TQMRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCRLKLQGH------K 432 (545)
Q Consensus 394 -~~l~~sp~~~~l~~~~~dg----------------------------------~I~i~d~~~~~~~~~~~~h------~ 432 (545)
..+.|+|+++.|++++.++ .|++||+.+++....+..+ .
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 7899999999999887543 7999999988765566554 5
Q ss_pred CCEEEEEEcCCCCEEEEEe-C----CcEEEEEcCCCCCcceEEEEee-CCCce----EEEEEcCCCCEEEEE--EcCC--
Q 009059 433 NQVHSVCWNTSGEYLASVS-D----ELVRVWSIGSGSKGECIHELSC-TGNKF----HSCVFHPTFPSLLVI--GCYE-- 498 (545)
Q Consensus 433 ~~I~~l~~sp~g~~l~s~s-d----g~I~vwd~~~~~~~~~i~~~~~-~~~~v----~~~~~sp~~~~l~~~--~~dg-- 498 (545)
..+..++|+|||++|++.. . ..|++||+.+++ +...+.. +...+ ..++|+|+|+.|+.. ..++
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 331 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR 331 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC---EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc---ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence 6789999999999987764 2 379999998873 3333322 23333 378999999987764 4455
Q ss_pred ----eEEEEe-CCCCe---EEEeccCCCCeeE-EEEeCCCCEEEEEeCC---CcEEEcC
Q 009059 499 ----TLELWN-MTENK---TLTLSAHDKLVSS-LAASTVNGMVASASHD---KCVKIWK 545 (545)
Q Consensus 499 ----~I~iwd-~~~~~---~~~~~~h~~~V~~-l~~spd~~~las~s~D---g~I~iWd 545 (545)
.|++|| ..++. ...+..+...+.. ++|+||+++|+..+.+ +.++||+
T Consensus 332 ~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 332 GKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp SCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred cceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 578888 45555 4455444444554 6999999999876665 7888884
No 142
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=1.7e-23 Score=240.70 Aligned_cols=291 Identities=8% Similarity=-0.013 Sum_probs=232.2
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CeEEEEeccCCccEEEEEEcCCCC
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~-~~~~~~l~~h~~~V~~l~~sp~~~ 318 (545)
...++|....+. ....+.+|.+.|.++.|+++ .++++++.|+.+.||.+.. +.....+..|. .+..++|+|+|+
T Consensus 183 ~~~~lw~~~~~~---~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~ 257 (1045)
T 1k32_A 183 TRGKIWIEVNSG---AFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGR 257 (1045)
T ss_dssp TCCEEEEEEETT---EEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSS
T ss_pred CcCCEEEECCCC---CeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCC
Confidence 345666544332 33445899999999999998 6777888889999998653 44455666565 366779999999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEecc-----------CcccEEEEEEe-CCCCcEEEEEcCCCcEEEEECCCCceeeE
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTG-----------HSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGV 386 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~-----------h~~~V~~l~~~-p~~~~ll~s~s~dg~I~lwd~~~~~~~~~ 386 (545)
+|+++ .++.|.+|++.... +..+.. |...+.+++|+ |++..+++.+ ++.|++|++..++....
T Consensus 258 ~la~~-~~~~i~~~d~~~~~--l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~~ 332 (1045)
T 1k32_A 258 RILFS-KGGSIYIFNPDTEK--IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLKV 332 (1045)
T ss_dssp CEEEE-ETTEEEEECTTTCC--EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEEC
T ss_pred EEEEE-eCCEEEEecCCceE--eeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEEc
Confidence 99988 48999999995432 334443 34578999999 9987776544 78999999998776554
Q ss_pred EeccC-CeeEEEEeCCCCEEEEEECCCeEE-EEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q 009059 387 FKCQS-GATQMRFQPRLGRILAAAIENYIS-ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 463 (545)
Q Consensus 387 ~~~~~-~v~~l~~sp~~~~l~~~~~dg~I~-i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~ 463 (545)
..+.. .+..+.|+ ++..+++++.++.+. +||+.++.... +.+|...+..++|+|+|++|++++ ++.|++||+.++
T Consensus 333 ~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg 410 (1045)
T 1k32_A 333 PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG 410 (1045)
T ss_dssp SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC
Confidence 44444 68889999 988899988888899 99998876554 447888999999999999999988 889999999887
Q ss_pred CCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC----------eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEE
Q 009059 464 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA 533 (545)
Q Consensus 464 ~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg----------~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~la 533 (545)
........+...+..++|+|++++|++++.++ .|++||+.+++...+..|...+..++|+|||++|+
T Consensus 411 ---~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~ 487 (1045)
T 1k32_A 411 ---KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLY 487 (1045)
T ss_dssp ---CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEE
T ss_pred ---ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEE
Confidence 45555557888899999999999998887754 89999999998778888999999999999999999
Q ss_pred EEeCCCcEEEcC
Q 009059 534 SASHDKCVKIWK 545 (545)
Q Consensus 534 s~s~Dg~I~iWd 545 (545)
+++.++...+|+
T Consensus 488 ~~s~~~~~~~~~ 499 (1045)
T 1k32_A 488 YLSYRSLDPSPD 499 (1045)
T ss_dssp EEESCCCCCEEC
T ss_pred EEecccCCcCcc
Confidence 999888777764
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=3e-23 Score=228.78 Aligned_cols=273 Identities=12% Similarity=0.088 Sum_probs=206.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----CC
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-----PD 338 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~-----~~ 338 (545)
..|.+++|+|| +.++.+. ++.|++||+.+++.... ..+...+.+++|+|||++|+++ .|+.|++||+.+ +.
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 57999999999 6666654 69999999998876544 4466778999999999999995 689999999987 55
Q ss_pred eeeeEeccCccc--------------EEEEEEeCCCCcEEEEEc--------------------------------CCCc
Q 009059 339 YSLRTFTGHSTT--------------VMSLDFHPSKEDLLCSCD--------------------------------NNSE 372 (545)
Q Consensus 339 ~~~~~~~~h~~~--------------V~~l~~~p~~~~ll~s~s--------------------------------~dg~ 372 (545)
. ......+... +.++.|+|+++.++++.. .+..
T Consensus 158 ~-~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 158 A-IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp C-EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred c-EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 3 3333333332 488999999987775541 3467
Q ss_pred EEEEECCCCceeeEEe---ccCCeeEEEEeCCCCEEEEEECCC-----eEEEEECCCC-EEEEEecC-CCC---CEEEEE
Q 009059 373 IRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIEN-----YISILDVETQ-VCRLKLQG-HKN---QVHSVC 439 (545)
Q Consensus 373 I~lwd~~~~~~~~~~~---~~~~v~~l~~sp~~~~l~~~~~dg-----~I~i~d~~~~-~~~~~~~~-h~~---~I~~l~ 439 (545)
|++||+.+++...... +...+..++|+|+++.+++++.++ .|++||+.++ ........ +.. .+.+++
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence 9999999887655442 234588999999999999887765 8999999998 44333321 222 346789
Q ss_pred EcC--CCCEEEEEe-CCcEEEEEcC-CCCCcceEEEEeeCCCceEE-EEEcCCCCEEEEEEcCC-----eEEEEeCCCCe
Q 009059 440 WNT--SGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYE-----TLELWNMTENK 509 (545)
Q Consensus 440 ~sp--~g~~l~s~s-dg~I~vwd~~-~~~~~~~i~~~~~~~~~v~~-~~~sp~~~~l~~~~~dg-----~I~iwd~~~~~ 509 (545)
|+| +|++|+++. |+.++||++. ++ ..+..+..+...+.. ++|+|+++.|++++.++ .|+.||+.+++
T Consensus 317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~---~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 317 FLPGSNNQFIWQSRRDGWNHLYLYDTTG---RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp ECTTCSSEEEEEECTTSSCEEEEEETTS---CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred eecCCCCEEEEEEccCCccEEEEEECCC---CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 999 999998888 8888999876 33 456666667777776 79999999887776653 67788888877
Q ss_pred EEEeccCCCCeeEEEEeCCCCEEEEEeCC----CcEEEcC
Q 009059 510 TLTLSAHDKLVSSLAASTVNGMVASASHD----KCVKIWK 545 (545)
Q Consensus 510 ~~~~~~h~~~V~~l~~spd~~~las~s~D----g~I~iWd 545 (545)
...+ .|...+.+++|+||+++|+.++.+ +.|++||
T Consensus 394 ~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 394 TKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp CEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred ceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 5444 377789999999999988876544 4588885
No 144
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.92 E-value=1.6e-23 Score=225.79 Aligned_cols=268 Identities=9% Similarity=0.041 Sum_probs=205.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC---CCeEEEEECCC--
Q 009059 263 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTEN-- 336 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~-dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~---dg~I~vwd~~~-- 336 (545)
..+|++++|+|||++||+++. ||++.||++.+++.......+...+..++|+|| +++++++. +...++|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 457999999999999999887 999999999777665544444468999999999 77777775 45566655543
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC----C
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE----N 412 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d----g 412 (545)
..... .+..+. .+...+|+|+++.++++.+.++.+.+||+.+++......... .++.|+|+|..+++++.+ +
T Consensus 100 ~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~ 175 (582)
T 3o4h_A 100 PGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRV 175 (582)
T ss_dssp TTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEE
T ss_pred CCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCe
Confidence 22212 333222 344668899887766565556667799999988776665444 889999999999988776 7
Q ss_pred eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CC--cEEEEEcCCCCCcceEEEEeeCCCceEEEE------
Q 009059 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCV------ 483 (545)
Q Consensus 413 ~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~------ 483 (545)
.|++||+.+++.. .+..|...+..++|+|||++|+++. ++ .|++||+.++ ... .+..+...+..+.
T Consensus 176 ~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 176 SLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVE-DLELPSKDFSSYRPTAITW 250 (582)
T ss_dssp EEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEE-ECCCSCSHHHHHCCSEEEE
T ss_pred EEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEE-EccCCCcChhhhhhccccc
Confidence 8999999988755 5677888999999999999999766 77 8999999876 333 5556666666666
Q ss_pred --EcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCc---EEEcC
Q 009059 484 --FHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC---VKIWK 545 (545)
Q Consensus 484 --~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~---I~iWd 545 (545)
|+|++..+++++.++.+++|++ ++... .+.+.|.+++|+ +++++++++.+.. |.+||
T Consensus 251 ~~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 251 LGYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp EEECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred eeEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 9999988888999999999999 65543 345678999999 9999998887743 55553
No 145
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=5.6e-23 Score=236.44 Aligned_cols=291 Identities=11% Similarity=0.058 Sum_probs=229.1
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCeEEEEeccCCccE------
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD------KKAVLWCTESFTVKSTLEEHTQWI------ 308 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~d------g~I~lwd~~~~~~~~~l~~h~~~V------ 308 (545)
.+.+|+...+. .+.+.+|...|.+++|||||++||+++.+ ..|++|++.+++ ...+..|...+
T Consensus 34 ~l~~~~~~gg~----~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~ 108 (1045)
T 1k32_A 34 DLWEHDLKSGS----TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMF 108 (1045)
T ss_dssp EEEEEETTTCC----EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEEC
T ss_pred cEEEEECCCCc----EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccc
Confidence 56777777664 35567899999999999999999988643 379999998877 56788888888
Q ss_pred -EEEEEcCCCCEEEEEeCC------CeEEEEECCCCCee-----------------------------------------
Q 009059 309 -TDVRFSPSLSRLATSSAD------RTVRVWDTENPDYS----------------------------------------- 340 (545)
Q Consensus 309 -~~l~~sp~~~~l~t~s~d------g~I~vwd~~~~~~~----------------------------------------- 340 (545)
..++|+|||+++++++.+ ..|.+|++..+...
T Consensus 109 ~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw 188 (1045)
T 1k32_A 109 TDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIW 188 (1045)
T ss_dssp SEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEE
T ss_pred cccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEE
Confidence 999999999977777754 35777776543210
Q ss_pred -------eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-CceeeEEeccCCeeEEEEeCCCCEEEEEECCC
Q 009059 341 -------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 412 (545)
Q Consensus 341 -------~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg 412 (545)
...+.+|...+.++.|+++ .++++++.++.+.+|.+.. +.....+..+..+...+|+|++..++++ .++
T Consensus 189 ~~~~~~~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~-~~~ 265 (1045)
T 1k32_A 189 IEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFS-KGG 265 (1045)
T ss_dssp EEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEE-ETT
T ss_pred EECCCCCeEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEE-eCC
Confidence 1123456778888899876 6777888889889997653 3344444444557778999998888777 589
Q ss_pred eEEEEECCCCEEEEEecC-----------CCCCEEEEEEc-CCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCC-ce
Q 009059 413 YISILDVETQVCRLKLQG-----------HKNQVHSVCWN-TSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGN-KF 479 (545)
Q Consensus 413 ~I~i~d~~~~~~~~~~~~-----------h~~~I~~l~~s-p~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~-~v 479 (545)
.|++||+...... .+.. |...+.+++|+ |+|++|+++.++.|.+|++..+ . ...+..+.. .+
T Consensus 266 ~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~---~-~~~~~~~~~~~~ 340 (1045)
T 1k32_A 266 SIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGT---Y-VLKVPEPLRIRY 340 (1045)
T ss_dssp EEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSS---B-EEECSCCSCEEE
T ss_pred EEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCC---c-eEEccCCCcceE
Confidence 9999999554433 5554 23368999999 9999999998999999998765 2 233555666 89
Q ss_pred EEEEEcCCCCEEEEEEcCCeEE-EEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 480 HSCVFHPTFPSLLVIGCYETLE-LWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 480 ~~~~~sp~~~~l~~~~~dg~I~-iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
..++|+ +++.|++++.+..|+ +||+.+++...+..|...+..++|+|||++|++++.++.|++||
T Consensus 341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d 406 (1045)
T 1k32_A 341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVD 406 (1045)
T ss_dssp EEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEE
Confidence 999999 999999999888899 99999988777668888999999999999999999999999996
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=8.9e-22 Score=197.55 Aligned_cols=249 Identities=14% Similarity=0.158 Sum_probs=183.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCe--EEEEeccCCccEEEEEEcCCCCEEEEEe-CCCeEEEEEC
Q 009059 261 ASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDT 334 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~---dg~I~lwd~~~~~--~~~~l~~h~~~V~~l~~sp~~~~l~t~s-~dg~I~vwd~ 334 (545)
.+...+..++|+|||+ |++++. ++.|++|++.+++ .+..+..+...+..++|+|++++|++++ .++.|.+|++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 4456788899999999 555443 6899999998766 3445456777889999999999998888 6899999999
Q ss_pred CCC-Ce-eeeEecc---------CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC-CCceeeE--Ee--ccCCeeEEEE
Q 009059 335 ENP-DY-SLRTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FK--CQSGATQMRF 398 (545)
Q Consensus 335 ~~~-~~-~~~~~~~---------h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~-~~~~~~~--~~--~~~~v~~l~~ 398 (545)
... .. .+..+.. +...+.+++|+|+++ ++++...++.|++|++. +++.... +. ....+..++|
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence 632 22 1222221 123488999999998 77788788999999998 5544322 22 2235788999
Q ss_pred eCCCCEEEEEE-CCCeEEEEECCC--CEE--EEEecCCC------CCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCC
Q 009059 399 QPRLGRILAAA-IENYISILDVET--QVC--RLKLQGHK------NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK 465 (545)
Q Consensus 399 sp~~~~l~~~~-~dg~I~i~d~~~--~~~--~~~~~~h~------~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~ 465 (545)
+|+++++++++ .++.|.+|++.. ++. +..+.... ..+..++|+|+|++|+++. ++.|.+|++.....
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~ 274 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH 274 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence 99999777765 578999999874 543 23333222 3588999999999875544 78999999974323
Q ss_pred cceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-CeEEEE--eCCCCeEE
Q 009059 466 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELW--NMTENKTL 511 (545)
Q Consensus 466 ~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iw--d~~~~~~~ 511 (545)
...+..+..+...+..++|+|++++|++++.+ +.|.+| |..++++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 275 LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 35566666666778999999999999998876 799999 55667665
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=2.1e-21 Score=194.84 Aligned_cols=260 Identities=11% Similarity=0.101 Sum_probs=182.4
Q ss_pred CCcEEEEEc--CCCeEEE-EeccCCccEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCe-eeeEeccCcccEEEEEE
Q 009059 284 DKKAVLWCT--ESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDY-SLRTFTGHSTTVMSLDF 356 (545)
Q Consensus 284 dg~I~lwd~--~~~~~~~-~l~~h~~~V~~l~~sp~~~~l~t~s~---dg~I~vwd~~~~~~-~~~~~~~h~~~V~~l~~ 356 (545)
++.|.+|++ ++++... ....+...+..++|+|+++ |++++. ++.|.+|++.++.. .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 456777755 4565543 3334556788899999999 555544 68999999976553 23344556778899999
Q ss_pred eCCCCcEEEEEcCCCcEEEEECCC-Cc--eeeEEecc----------CCeeEEEEeCCCCEEEEEECCCeEEEEECC-CC
Q 009059 357 HPSKEDLLCSCDNNSEIRYWSINN-GS--CAGVFKCQ----------SGATQMRFQPRLGRILAAAIENYISILDVE-TQ 422 (545)
Q Consensus 357 ~p~~~~ll~s~s~dg~I~lwd~~~-~~--~~~~~~~~----------~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~-~~ 422 (545)
+|+++.+++++..++.|.+|++.. +. .+..+... ..+.+++|+|++..+++...++.|.+||+. ++
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 999987876666889999999963 33 23333221 137789999998844444457899999998 55
Q ss_pred EEE--EEecC-CCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCC-CcceEEEEeeCC------CceEEEEEcCCCCE
Q 009059 423 VCR--LKLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELSCTG------NKFHSCVFHPTFPS 490 (545)
Q Consensus 423 ~~~--~~~~~-h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~-~~~~i~~~~~~~------~~v~~~~~sp~~~~ 490 (545)
+.. ..+.. ....+..++|+|+|++|+++. ++.|.+|++.... ....+..+.... ..+..++|+|++++
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence 432 22232 234788999999999777755 7799999987521 112233333222 45889999999998
Q ss_pred EEEEE-cCCeEEEEeCCCC---eEE-EeccCCCCeeEEEEeCCCCEEEEEeCC-CcEEEc
Q 009059 491 LLVIG-CYETLELWNMTEN---KTL-TLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW 544 (545)
Q Consensus 491 l~~~~-~dg~I~iwd~~~~---~~~-~~~~h~~~V~~l~~spd~~~las~s~D-g~I~iW 544 (545)
|+++. .++.|.+|++... +.+ .+..+...+..++|+||+++|++++.+ +.|.+|
T Consensus 254 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 254 LYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp EEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 86554 5789999999732 333 445566778999999999998888765 899999
No 148
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.90 E-value=4.6e-22 Score=202.56 Aligned_cols=286 Identities=11% Similarity=0.064 Sum_probs=207.6
Q ss_pred EEeecCCCCCeEE-----EEEcCCCCEEEEEeC-CC--cEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 009059 256 FQLIPASTSKVES-----CHFSPDGKLLATGGH-DK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 256 ~~~l~~H~~~V~~-----l~~spdg~~latg~~-dg--~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg 327 (545)
+..+..|...+.. .+|+|||++||.++. ++ .|.+||+.+++......++...+..++|+||+++|+.++.++
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~ 102 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR 102 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence 4456667666666 899999999999887 66 488899999988877777777666788999999999999999
Q ss_pred eEEEEECCCCCeeeeEeccCcccEEEEE--EeCCCCcEEEEE---------------------cCCCcEEEEECCCCcee
Q 009059 328 TVRVWDTENPDYSLRTFTGHSTTVMSLD--FHPSKEDLLCSC---------------------DNNSEIRYWSINNGSCA 384 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~--~~p~~~~ll~s~---------------------s~dg~I~lwd~~~~~~~ 384 (545)
.|++||+.+++. ...+..+...+.... +++++..+++.. ..+..|++||+.+++..
T Consensus 103 ~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (388)
T 3pe7_A 103 NLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST 181 (388)
T ss_dssp EEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred eEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence 999999998764 444454555554444 478876655321 23468999999999877
Q ss_pred eEEeccCCeeEEEEeC-CCCEEEEEECC------CeEEEEECCCCEEEEEecCCC--CCEEEEEEcCCCCEEEEEe--CC
Q 009059 385 GVFKCQSGATQMRFQP-RLGRILAAAIE------NYISILDVETQVCRLKLQGHK--NQVHSVCWNTSGEYLASVS--DE 453 (545)
Q Consensus 385 ~~~~~~~~v~~l~~sp-~~~~l~~~~~d------g~I~i~d~~~~~~~~~~~~h~--~~I~~l~~sp~g~~l~s~s--dg 453 (545)
........+..+.|+| ++..|+.+..+ ..|.++|+..+.... +..+. ..+..++|+|+|+.|+..+ ++
T Consensus 182 ~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 260 (388)
T 3pe7_A 182 VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGESCTHEFWVPDGSALVYVSYLKG 260 (388)
T ss_dssp EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcccccceECCCCCEEEEEecCCC
Confidence 7777667789999999 98888877753 378889987665433 33343 3578899999999776544 33
Q ss_pred ----cEEEEEcCCCCCcceEEEEeeCCCc---eEEEEEcCCCCEEEEE---------EcCCeEEEEeCCCCeEEEeccCC
Q 009059 454 ----LVRVWSIGSGSKGECIHELSCTGNK---FHSCVFHPTFPSLLVI---------GCYETLELWNMTENKTLTLSAHD 517 (545)
Q Consensus 454 ----~I~vwd~~~~~~~~~i~~~~~~~~~---v~~~~~sp~~~~l~~~---------~~dg~I~iwd~~~~~~~~~~~h~ 517 (545)
.|++||+.+++. ..+..+..+... ...+.|+|+|+.|+.. ..+..|++||+.+++...+..|.
T Consensus 261 ~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~ 339 (388)
T 3pe7_A 261 SPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHD 339 (388)
T ss_dssp CCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECC
T ss_pred CCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEecccc
Confidence 299999988743 233333221000 1113699999988765 34558999999999887776666
Q ss_pred C-----------CeeEEEEeCCCCEEEEEe-CCCcEEEc
Q 009059 518 K-----------LVSSLAASTVNGMVASAS-HDKCVKIW 544 (545)
Q Consensus 518 ~-----------~V~~l~~spd~~~las~s-~Dg~I~iW 544 (545)
. .+.+++|+|||+.|+.++ .+|...||
T Consensus 340 ~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 340 TSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp CCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred CcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 6 588899999999888666 47777776
No 149
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=1.2e-22 Score=224.34 Aligned_cols=292 Identities=11% Similarity=0.057 Sum_probs=206.2
Q ss_pred cceeeeeecCCceeeEEEEeecCCCC---CeEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCCeEE--EEeccC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVK--STLEEH 304 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~---~V~~l~~spdg~~latg~~d---------g~I~lwd~~~~~~~--~~l~~h 304 (545)
+..+++|+..++.. ...+.+|.. .|.+++|||||++||+++.+ +.|++||+.+++.. .....|
T Consensus 36 dg~i~~~d~~~g~~---~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 112 (723)
T 1xfd_A 36 KGTVRLWNVETNTS---TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS 112 (723)
T ss_dssp SSCEEEBCGGGCCC---EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCC
T ss_pred CCCEEEEECCCCcE---EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccc
Confidence 45789999988754 344566665 49999999999999999764 78889999988762 222345
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCccc------------------EEEEEEeCCCCcEEEE
Q 009059 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT------------------VMSLDFHPSKEDLLCS 366 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~------------------V~~l~~~p~~~~ll~s 366 (545)
...+..++|+|||++|++++. +.|++||+.++.. ......+... +.+++|+|+++.++++
T Consensus 113 ~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~ 190 (723)
T 1xfd_A 113 NAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA 190 (723)
T ss_dssp SCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred cccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEE
Confidence 556889999999999999986 7999999987664 4444433332 3789999999877755
Q ss_pred EcCC---------------------------------CcEEEEECCCCceeeEEec-------cCCeeEEEEeCCCCEEE
Q 009059 367 CDNN---------------------------------SEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRIL 406 (545)
Q Consensus 367 ~s~d---------------------------------g~I~lwd~~~~~~~~~~~~-------~~~v~~l~~sp~~~~l~ 406 (545)
...+ ..|++||+.++++...+.. ...+..+.|+|++..++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~ 270 (723)
T 1xfd_A 191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAV 270 (723)
T ss_dssp EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEE
T ss_pred EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEE
Confidence 4321 2799999998876555543 23478899999988776
Q ss_pred EEEC----CCeEEEEECCCCEEEEEecC-CCCCE----EEEEEcCCCCEEEEE-e--CC------cEEEEEc-CCCCCcc
Q 009059 407 AAAI----ENYISILDVETQVCRLKLQG-HKNQV----HSVCWNTSGEYLASV-S--DE------LVRVWSI-GSGSKGE 467 (545)
Q Consensus 407 ~~~~----dg~I~i~d~~~~~~~~~~~~-h~~~I----~~l~~sp~g~~l~s~-s--dg------~I~vwd~-~~~~~~~ 467 (545)
+... +..|++||+.+++....+.. +...+ ..++|+|+|+.|+.. + ++ .|.+||+ ..+.. .
T Consensus 271 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~ 349 (723)
T 1xfd_A 271 TWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN-D 349 (723)
T ss_dssp EEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS-C
T ss_pred EEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc-c
Confidence 6653 35799999999887665543 33444 378999999977654 3 66 4666773 33320 0
Q ss_pred eEEEEeeCCCceEE-EEEcCCCCEEEEEEcC---CeEEEEeCCCC---eEEEecc---CCCCeeEEEEeCCCCEEEEEe
Q 009059 468 CIHELSCTGNKFHS-CVFHPTFPSLLVIGCY---ETLELWNMTEN---KTLTLSA---HDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 468 ~i~~~~~~~~~v~~-~~~sp~~~~l~~~~~d---g~I~iwd~~~~---~~~~~~~---h~~~V~~l~~spd~~~las~s 536 (545)
+...+......+.. ++|+|+++.|+..+.+ +.++||++... +...+.. |...+..++|+||+++|+...
T Consensus 350 ~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 350 NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred ceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 12233333344444 6999999999877766 67889987542 2223433 677799999999999887654
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=1.3e-20 Score=190.15 Aligned_cols=282 Identities=12% Similarity=0.071 Sum_probs=199.5
Q ss_pred cceeeeeecC--CceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEEcCC--CeE--EEEeccCCccE
Q 009059 239 DRVGRSAEVG--KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD----KKAVLWCTES--FTV--KSTLEEHTQWI 308 (545)
Q Consensus 239 d~~~~~~~~~--~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~d----g~I~lwd~~~--~~~--~~~l~~h~~~V 308 (545)
+..+.+|.+. ++ .+..+..+ |...+..++|+|||++|++++.+ +.|.+|++.. ++. +.....+....
T Consensus 26 ~~~i~~~~~d~~~g-~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p 102 (361)
T 3scy_A 26 SKGIYTFRFNEETG-ESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADP 102 (361)
T ss_dssp CCEEEEEEEETTTC-CEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCE
T ss_pred CCCEEEEEEeCCCC-CEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCc
Confidence 3445566543 33 33444444 77788899999999999999875 7999998765 443 33444456677
Q ss_pred EEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeee--eE---ecc--------CcccEEEEEEeCCCCcEEEEEcCCCcEE
Q 009059 309 TDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSL--RT---FTG--------HSTTVMSLDFHPSKEDLLCSCDNNSEIR 374 (545)
Q Consensus 309 ~~l~~sp~~~~l~t~s-~dg~I~vwd~~~~~~~~--~~---~~~--------h~~~V~~l~~~p~~~~ll~s~s~dg~I~ 374 (545)
..+++ ++++|++++ .++.|.+|++....... .. ..+ +...+.+++|+|+++.+++++..++.|+
T Consensus 103 ~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~ 180 (361)
T 3scy_A 103 CYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIH 180 (361)
T ss_dssp EEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEE
Confidence 88888 788777776 57899999997543211 11 111 1234688999999988887877789999
Q ss_pred EEECCCCce--------------eeEEeccCCeeEEEEeCCCCEEEEEE-CCCeEEEEECCCCEE--EEEec---CCCCC
Q 009059 375 YWSINNGSC--------------AGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVC--RLKLQ---GHKNQ 434 (545)
Q Consensus 375 lwd~~~~~~--------------~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~--~~~~~---~h~~~ 434 (545)
+|++..... .........+..++|+|++++++++. .++.|.+||+.++.. +..+. .+...
T Consensus 181 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~ 260 (361)
T 3scy_A 181 KFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQG 260 (361)
T ss_dssp EEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCC
T ss_pred EEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCC
Confidence 998875431 11223345688999999999888888 589999999987754 23332 23456
Q ss_pred EEEEEEcCCCCEEEEEe-C--CcEEEEEcCCC-CCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCCeEEEE--eCCC
Q 009059 435 VHSVCWNTSGEYLASVS-D--ELVRVWSIGSG-SKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELW--NMTE 507 (545)
Q Consensus 435 I~~l~~sp~g~~l~s~s-d--g~I~vwd~~~~-~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~I~iw--d~~~ 507 (545)
+..++|+|+|++|+++. + +.|.+|++... .....+..+.. ...+..++|+|++++|++++ .++.|.+| |..+
T Consensus 261 ~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~ 339 (361)
T 3scy_A 261 SGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQAT 339 (361)
T ss_dssp EEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTT
T ss_pred cccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCC
Confidence 78999999999987766 5 68999999621 22234545554 56788999999999999988 45788885 5567
Q ss_pred CeEEEec--cCCCCeeEEEEe
Q 009059 508 NKTLTLS--AHDKLVSSLAAS 526 (545)
Q Consensus 508 ~~~~~~~--~h~~~V~~l~~s 526 (545)
++...+. .+...+.||.|.
T Consensus 340 g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 340 GLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CCEEECSCCEECSSEEEEEEE
T ss_pred CcEeecceeeeCCCCeEEEEc
Confidence 7766443 345678898886
No 151
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=1.1e-21 Score=196.09 Aligned_cols=270 Identities=9% Similarity=0.039 Sum_probs=193.7
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCC-ccEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCCeeeeEec
Q 009059 268 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 268 ~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~-~~V~~l~~sp~~~~l~-t~s~dg~I~vwd~~~~~~~~~~~~ 345 (545)
.++++++++++++++.++.|++||..+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++. ...+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-EEEEE
Confidence 35778889999999999999999999999888876543 2578899999998665 455689999999988764 44443
Q ss_pred -cC-----cccEEEEEEeCCCCcEEEEEcC-----------CCcEEEEECCCCc---eeeEEeccCCeeEEEEeCCCCEE
Q 009059 346 -GH-----STTVMSLDFHPSKEDLLCSCDN-----------NSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRI 405 (545)
Q Consensus 346 -~h-----~~~V~~l~~~p~~~~ll~s~s~-----------dg~I~lwd~~~~~---~~~~~~~~~~v~~l~~sp~~~~l 405 (545)
.+ ...+.+++|+|+++.++++... ++.|.+||+.+++ .+..+.....+.+++|+|++. +
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L 161 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence 22 2347889999998877755432 4899999998844 344555666788999999988 6
Q ss_pred EEEECCCeEEEEECCCCEEEEEecCCCC------------------------CEEEEEEcCCCCEEEEEe--CCcEEEEE
Q 009059 406 LAAAIENYISILDVETQVCRLKLQGHKN------------------------QVHSVCWNTSGEYLASVS--DELVRVWS 459 (545)
Q Consensus 406 ~~~~~dg~I~i~d~~~~~~~~~~~~h~~------------------------~I~~l~~sp~g~~l~s~s--dg~I~vwd 459 (545)
+++ ++.|++||+.+++.+..+..+.. ....+++++++....... ...+..++
T Consensus 162 ~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEc--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 664 34499999999988777654320 344566766542211111 11222345
Q ss_pred cCCCCCcceEEEEeeCCCceEEEEEcC-CCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 460 IGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 460 ~~~~~~~~~i~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
..++. .....+......+..++|+| ++++++++ ++.|++||+.+++.+........+.+++|+|++++|++++.+
T Consensus 240 ~~~~~--~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 315 (349)
T 1jmx_B 240 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF 315 (349)
T ss_dssp TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBS
T ss_pred ccCCc--EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCC
Confidence 44432 12222334566788999999 99988888 889999999999887444455568899999999988888889
Q ss_pred CcEEEcC
Q 009059 539 KCVKIWK 545 (545)
Q Consensus 539 g~I~iWd 545 (545)
+.|++||
T Consensus 316 ~~v~v~d 322 (349)
T 1jmx_B 316 NDLAVFN 322 (349)
T ss_dssp SEEEEEE
T ss_pred CeEEEEe
Confidence 9999996
No 152
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=1e-21 Score=195.33 Aligned_cols=262 Identities=12% Similarity=0.068 Sum_probs=199.6
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCC-CeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCeEEEEecc-C----CccEEE
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTS-KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEE-H----TQWITD 310 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~-~V~~l~~spdg~~la-tg~~dg~I~lwd~~~~~~~~~l~~-h----~~~V~~ 310 (545)
.+..+++||..++.....+. .++.. .+.+++|+|+|++++ ++..++.|.+||+.+++.+..+.. + ...+.+
T Consensus 9 ~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 86 (337)
T 1pby_B 9 RPDKLVVIDTEKMAVDKVIT--IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFG 86 (337)
T ss_dssp TTTEEEEEETTTTEEEEEEE--CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTC
T ss_pred CCCeEEEEECCCCcEEEEEE--cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccc
Confidence 35678889988876544332 12222 478899999998764 555678999999999988876653 2 235778
Q ss_pred EEEcCCCCEEEEEe------------CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEEC
Q 009059 311 VRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 378 (545)
Q Consensus 311 l~~sp~~~~l~t~s------------~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~ 378 (545)
++|+|++++|+++. .++.|.+||+.+++. +..+.. ...+.+++|+|+++.++++ ++.|++||+
T Consensus 87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~---~~~i~~~d~ 161 (337)
T 1pby_B 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQITMLAWARDGSKLYGL---GRDLHVMDP 161 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSCCCEEECTTSSCEEEE---SSSEEEEET
T ss_pred eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE-EEEEeC-CCCcceeEECCCCCEEEEe---CCeEEEEEC
Confidence 99999999999886 579999999987654 444443 4567889999998877644 688999999
Q ss_pred CCCceeeEEeccCCeeEEEEeCCCCEEEEEECCC------------------------eEEEEECCCCEEE-EEecCCCC
Q 009059 379 NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN------------------------YISILDVETQVCR-LKLQGHKN 433 (545)
Q Consensus 379 ~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg------------------------~I~i~d~~~~~~~-~~~~~h~~ 433 (545)
.+++....+........+.|+|++..+++.+..+ .|.+||+.+++.. ..+..+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 241 (337)
T 1pby_B 162 EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241 (337)
T ss_dssp TTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSS
T ss_pred CCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCC
Confidence 9998887776544223447888887666554322 4789999988664 33445667
Q ss_pred CEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 434 QVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
.+.+++|+|++++|+++ ++.|++||+.++ +.+..+.. ...+.+++|+|++++|++++.++.|++||+.+++.+
T Consensus 242 ~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 242 FYFSTAVNPAKTRAFGA-YNVLESFDLEKN---ASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp CEEEEEECTTSSEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred ceeeEEECCCCCEEEEe-CCeEEEEECCCC---cCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 88999999999999888 789999999876 45555543 456789999999999999988999999999998877
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=3.1e-21 Score=212.63 Aligned_cols=258 Identities=14% Similarity=0.104 Sum_probs=194.4
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-----CeEEEEeccCCcc-------
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQW------- 307 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~-----~~~~~~l~~h~~~------- 307 (545)
..+++|+..++.. ..+..|...+.+++|||||++||++ .++.|++|++.+ ++.......+...
T Consensus 101 ~~i~~~d~~~~~~----~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 101 GGLVGFDMLARKV----TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp TEEEEEETTTTEE----EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred CEEEEEECCCCce----EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 6788999887743 3345677789999999999999995 689999999998 7776655544443
Q ss_pred -------EEEEEEcCCCCEEEEEe---------------------------------CCCeEEEEECCCCCeeeeEe--c
Q 009059 308 -------ITDVRFSPSLSRLATSS---------------------------------ADRTVRVWDTENPDYSLRTF--T 345 (545)
Q Consensus 308 -------V~~l~~sp~~~~l~t~s---------------------------------~dg~I~vwd~~~~~~~~~~~--~ 345 (545)
+.+++|+|||++|++++ .+..|.+||+.++.. .... .
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~ 254 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT-VYLQTGE 254 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE-EECCCCS
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce-EeeccCC
Confidence 48899999999999987 457899999987654 2222 2
Q ss_pred cCcccEEEEEEeCCCCcEEEEEcCCC-----cEEEEECCCC-ceeeEEeccC-----CeeEEEEeC--CCCEEEEEECCC
Q 009059 346 GHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNG-SCAGVFKCQS-----GATQMRFQP--RLGRILAAAIEN 412 (545)
Q Consensus 346 ~h~~~V~~l~~~p~~~~ll~s~s~dg-----~I~lwd~~~~-~~~~~~~~~~-----~v~~l~~sp--~~~~l~~~~~dg 412 (545)
.|...+.+++|+|+++.++++. .++ .|++||+.++ .......... .+..+.|+| ++.+++++..++
T Consensus 255 ~~~~~~~~~~~spdg~~l~~~~-~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENILYVAE-VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp CTTCEEEEEEECTTSSEEEEEE-ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred CCceeEeeEEEECCCCEEEEEE-eCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 5677899999999987766444 343 8999999998 4333332211 236789999 988787787888
Q ss_pred eEEEEECC-CCEEEEEecCCCCCEEE-EEEcCCCCEEEEEe--CC----cEEEEEcCCCCCcceEEEEeeCCCceEEEEE
Q 009059 413 YISILDVE-TQVCRLKLQGHKNQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVF 484 (545)
Q Consensus 413 ~I~i~d~~-~~~~~~~~~~h~~~I~~-l~~sp~g~~l~s~s--dg----~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~ 484 (545)
.+++|++. ++..+..+..+...+.. ++|+|+++.|+.++ ++ .|..||+.++. ...+. +...+..++|
T Consensus 334 ~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~l~-~~~~~~~~~~ 408 (706)
T 2z3z_A 334 WNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK----TKDLT-PESGMHRTQL 408 (706)
T ss_dssp SCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC----CEESC-CSSSEEEEEE
T ss_pred ccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC----ceecc-CCCceEEEEE
Confidence 88888776 56677778778888877 79999999887665 44 56667766653 22222 5667899999
Q ss_pred cCCCCEEEEEEcC----CeEEEEeCCCCe
Q 009059 485 HPTFPSLLVIGCY----ETLELWNMTENK 509 (545)
Q Consensus 485 sp~~~~l~~~~~d----g~I~iwd~~~~~ 509 (545)
+|++++|++...+ +.|++||+.+++
T Consensus 409 spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 409 SPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 9999988877554 369999998887
No 154
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=2.2e-20 Score=187.16 Aligned_cols=235 Identities=9% Similarity=0.077 Sum_probs=190.3
Q ss_pred CccEEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEE
Q 009059 305 TQWITDVRFSPSLSRLATSSA-------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 377 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~-------dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd 377 (545)
...+..++|+|++++|++++. ++.|.+||..+++. +..+.. ...+..++|+|+++.+++++..++.|.+||
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-TQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-EEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-EEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 456789999999999888874 56899999998764 555443 345788999999988888888889999999
Q ss_pred CCCCceeeEEeccC----------CeeEEEEeCCCCEEEEEE--CCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCC
Q 009059 378 INNGSCAGVFKCQS----------GATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 445 (545)
Q Consensus 378 ~~~~~~~~~~~~~~----------~v~~l~~sp~~~~l~~~~--~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~ 445 (545)
+.+++.+..+.... .+..+.|+|++++++++. .++.|.+||+++++.+..+..+...+.+++|+|+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 99999888877543 168899999999888877 378999999999999988876666789999999999
Q ss_pred EEEEEe-CCcEEEEEcCCCCCcceEEEEee----CCCceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEEEeccCCCC
Q 009059 446 YLASVS-DELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKL 519 (545)
Q Consensus 446 ~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~----~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~~h~~~ 519 (545)
+|+++. ++.|.+||+.++ ..+..+.. +...+..++|+|+++++++++.+ +.|.+||+.+++.+.......
T Consensus 198 ~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~- 273 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADN---KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE- 273 (353)
T ss_dssp EEEEECTTSEEEEEETTTT---EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-
T ss_pred EEEEEcCCCeEEEEECCCC---eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-
Confidence 999888 889999999887 55555543 44567889999999988888765 799999999998873322222
Q ss_pred eeEEEEeCCCCEEEEEe-CCCcEEEcC
Q 009059 520 VSSLAASTVNGMVASAS-HDKCVKIWK 545 (545)
Q Consensus 520 V~~l~~spd~~~las~s-~Dg~I~iWd 545 (545)
...++|+|++++|++++ .++.|.+||
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEE
Confidence 25799999999666555 689999996
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=3.9e-21 Score=199.25 Aligned_cols=241 Identities=10% Similarity=0.084 Sum_probs=175.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe----------EEEE-----eccCCccEEEEEEcCCCCEEE----EE
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT----------VKST-----LEEHTQWITDVRFSPSLSRLA----TS 323 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~----------~~~~-----l~~h~~~V~~l~~sp~~~~l~----t~ 323 (545)
...+..+++++++.+|++++.++ |+||+..... .+.. ...|...|.+++|+|++++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34688999999999999999887 8888753210 1111 113567799999999999999 78
Q ss_pred eCCCeEEEEECCCC-----Ce-----eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCC
Q 009059 324 SADRTVRVWDTENP-----DY-----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSG 392 (545)
Q Consensus 324 s~dg~I~vwd~~~~-----~~-----~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~ 392 (545)
+.|+.|+|||+.+. .. .+..+.+|...|.+++|+|+...++++++.||+|++||++++..+.... +...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 88999999998653 11 2456678999999999999867788899999999999999886654433 4568
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCC-------CCEEEEEEcCCCCEEEEEe--CC------cEEE
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-------NQVHSVCWNTSGEYLASVS--DE------LVRV 457 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-------~~I~~l~~sp~g~~l~s~s--dg------~I~v 457 (545)
+.+++|+|++.+|++++.||.|++||++ +.....+..|. ..|.+++|++++.++++.. +| .+++
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i 273 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM 273 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence 9999999999999999999999999998 55555554432 3799999999988887654 43 3899
Q ss_pred EEcCCCCC--cceEEEEe-------eCCCceEEEEEcCCCCEEEEEEcCC-eEEEEeC
Q 009059 458 WSIGSGSK--GECIHELS-------CTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM 505 (545)
Q Consensus 458 wd~~~~~~--~~~i~~~~-------~~~~~v~~~~~sp~~~~l~~~~~dg-~I~iwd~ 505 (545)
|+++.... ......+. ....+...+.+.++.+++++++... .|.|+..
T Consensus 274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 274 ALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp EECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred EEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 99986532 12222221 1122333344447777777766544 4555543
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=3.4e-20 Score=187.14 Aligned_cols=266 Identities=9% Similarity=0.073 Sum_probs=187.5
Q ss_pred CCEEEEEe----CCCcEEEEEc--CCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC----CeEEEEECCCC--Ce-ee
Q 009059 275 GKLLATGG----HDKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENP--DY-SL 341 (545)
Q Consensus 275 g~~latg~----~dg~I~lwd~--~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d----g~I~vwd~~~~--~~-~~ 341 (545)
..++++|+ .++.|.+|.+ ++++.......+...+..++|+|++++|++++.+ +.|.+|++... .. .+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 34556664 3568999866 4555443222267778889999999999999886 79999998763 22 12
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeE----Eec-----------cCCeeEEEEeCCCCEEE
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKC-----------QSGATQMRFQPRLGRIL 406 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~----~~~-----------~~~v~~l~~sp~~~~l~ 406 (545)
.....+......+++ +++.++++...++.|.+|++.....+.. +.. ...+.+++|+|++++++
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 333445566778888 6777777777889999999975433221 111 12247899999999887
Q ss_pred EEEC-CCeEEEEECCCCE-------E------EEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEE
Q 009059 407 AAAI-ENYISILDVETQV-------C------RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 407 ~~~~-dg~I~i~d~~~~~-------~------~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~ 470 (545)
++.. ++.|.+|++.... . ......+...+..++|+|+|++|+++. ++.|.+|++.++.. ..+.
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~-~~~~ 249 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML-DEIQ 249 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-EEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-EEeE
Confidence 7765 7899999887432 1 122233456788999999999887776 77999999986522 2233
Q ss_pred EEe---eCCCceEEEEEcCCCCEEEEEEcC--CeEEEEeCC--CCeEE---EeccCCCCeeEEEEeCCCCEEEEEe-CCC
Q 009059 471 ELS---CTGNKFHSCVFHPTFPSLLVIGCY--ETLELWNMT--ENKTL---TLSAHDKLVSSLAASTVNGMVASAS-HDK 539 (545)
Q Consensus 471 ~~~---~~~~~v~~~~~sp~~~~l~~~~~d--g~I~iwd~~--~~~~~---~~~~h~~~V~~l~~spd~~~las~s-~Dg 539 (545)
.+. .+......++|+|++++|+++..+ +.|.+|++. +++.. .+.. ...+.+++|+||+++|++++ .++
T Consensus 250 ~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~ 328 (361)
T 3scy_A 250 TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTN 328 (361)
T ss_dssp EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTT
T ss_pred EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCC
Confidence 332 223457899999999999887766 799999985 44432 2333 56788999999999988887 678
Q ss_pred cEEEc
Q 009059 540 CVKIW 544 (545)
Q Consensus 540 ~I~iW 544 (545)
.|.+|
T Consensus 329 ~v~v~ 333 (361)
T 3scy_A 329 VIQIF 333 (361)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 99996
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=216.91 Aligned_cols=271 Identities=11% Similarity=0.058 Sum_probs=199.5
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCc---cEEEEEEcCCCCEEEEEeC---------CCeEEEEECC
Q 009059 268 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSA---------DRTVRVWDTE 335 (545)
Q Consensus 268 ~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~---~V~~l~~sp~~~~l~t~s~---------dg~I~vwd~~ 335 (545)
+++|+|||+++++ +.|+.|++||+.+++....+..|.. .|.+++|+|||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6899999966555 4699999999999998877776654 4899999999999999876 7899999998
Q ss_pred CCCeee-eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-------------------CCeeE
Q 009059 336 NPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQ 395 (545)
Q Consensus 336 ~~~~~~-~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-------------------~~v~~ 395 (545)
+++... ..+ ...+..++|+|+|+.++++ . ++.|++||+.+++........ .....
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~-~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYV-Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEE-E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCccccceec---CcccccceECCCCCEEEEE-E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 765310 222 2468899999999877754 3 789999999888765432211 11148
Q ss_pred EEEeCCCCEEEEEECCC----------------------------------eEEEEECCCCEEE---E-----EecCCCC
Q 009059 396 MRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCR---L-----KLQGHKN 433 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg----------------------------------~I~i~d~~~~~~~---~-----~~~~h~~ 433 (545)
+.|+|+|..|++++.|. .|++||+.+++.+ . .+.+|..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 99999999999887642 7889999987642 1 1335778
Q ss_pred CEEEEEEcCCCCEEEEEe-CC----cEEEEE----cCCCCCcceEE-EEeeCCCceE-----EEEEcCCCCEEEEE--Ec
Q 009059 434 QVHSVCWNTSGEYLASVS-DE----LVRVWS----IGSGSKGECIH-ELSCTGNKFH-----SCVFHPTFPSLLVI--GC 496 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~s~s-dg----~I~vwd----~~~~~~~~~i~-~~~~~~~~v~-----~~~~sp~~~~l~~~--~~ 496 (545)
.+..++|+||++++++.. .+ .|.+|| +.+++....+. ....+...+. .+.|+|+++.|+.. ..
T Consensus 254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 333 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK 333 (719)
T ss_dssp EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence 899999999988777754 22 488899 76653222221 1134555565 78999999976653 34
Q ss_pred CC--eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCC-----CcEEEcC
Q 009059 497 YE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-----KCVKIWK 545 (545)
Q Consensus 497 dg--~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~D-----g~I~iWd 545 (545)
++ .|++||+.+++...+..+...+..+.++ +++.|+..+.+ +.++||+
T Consensus 334 ~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 334 DGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp TSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred CCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 44 7888999888877777777778888888 88877776655 7788873
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.86 E-value=1.1e-19 Score=183.96 Aligned_cols=267 Identities=11% Similarity=0.062 Sum_probs=185.7
Q ss_pred EEEEEeCC--CcEEEEEc--CCCeEEEE--ec-cCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCCeeeeEecc-C
Q 009059 277 LLATGGHD--KKAVLWCT--ESFTVKST--LE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPDYSLRTFTG-H 347 (545)
Q Consensus 277 ~latg~~d--g~I~lwd~--~~~~~~~~--l~-~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~-~~~~~~~~~~~-h 347 (545)
+|++|++. +.|.+|++ .++++... .. .+...+..++|+|++++|++++.+ .|.+|++. +++. ...... .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-~~~~~~~~ 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-VHEASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-EEEEEEEC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-EEeeEeec
Confidence 45566653 46877764 55654322 21 234467889999999999999888 99999997 5543 222211 1
Q ss_pred cccEEEEEEeCCCCc-EEEEEc-------------CCCcEEEEECC-CCceeeEEe-----ccCCeeEEEEeCCCCEEEE
Q 009059 348 STTVMSLDFHPSKED-LLCSCD-------------NNSEIRYWSIN-NGSCAGVFK-----CQSGATQMRFQPRLGRILA 407 (545)
Q Consensus 348 ~~~V~~l~~~p~~~~-ll~s~s-------------~dg~I~lwd~~-~~~~~~~~~-----~~~~v~~l~~sp~~~~l~~ 407 (545)
.+.+.+++|+|+++. +++++. .++.+.+|++. +++....+. ....+..++|+|+++++++
T Consensus 82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~ 161 (365)
T 1jof_A 82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence 123556899999875 344553 68999999997 466554433 3456899999999998887
Q ss_pred EEC-CCeEEEEECC-CCEEE--EEec--CCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCC--CCCcceEEEEee---
Q 009059 408 AAI-ENYISILDVE-TQVCR--LKLQ--GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS--GSKGECIHELSC--- 474 (545)
Q Consensus 408 ~~~-dg~I~i~d~~-~~~~~--~~~~--~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~--~~~~~~i~~~~~--- 474 (545)
+.. ++.|++||+. +++.. ..+. .|...+..++|+|+|++|+++. ++.|.+|++.. +........+..
T Consensus 162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence 765 6899999998 66543 3333 2466799999999999988776 67999998763 321100122221
Q ss_pred ----CCC------ceEEEE-EcCCCCEEEEEEcCC------eEEEEeCC-CCeEEE----eccCCCCeeEEEEeC---CC
Q 009059 475 ----TGN------KFHSCV-FHPTFPSLLVIGCYE------TLELWNMT-ENKTLT----LSAHDKLVSSLAAST---VN 529 (545)
Q Consensus 475 ----~~~------~v~~~~-~sp~~~~l~~~~~dg------~I~iwd~~-~~~~~~----~~~h~~~V~~l~~sp---d~ 529 (545)
+.. .+..++ |+|++++|+++..+. .|.+|++. +++... ...+...+..++|+| |+
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 111 588999 999999988776533 89999996 565542 223556678899999 89
Q ss_pred CEEEEEeCC-CcEEEcC
Q 009059 530 GMVASASHD-KCVKIWK 545 (545)
Q Consensus 530 ~~las~s~D-g~I~iWd 545 (545)
++|++++.+ +.|+||+
T Consensus 322 ~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYR 338 (365)
T ss_dssp TEEEEECSSSCEEEEEE
T ss_pred CEEEEEEcCCCeEEEEE
Confidence 999999875 8999995
No 159
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.86 E-value=1.5e-20 Score=191.46 Aligned_cols=271 Identities=13% Similarity=0.041 Sum_probs=191.5
Q ss_pred eEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009059 266 VESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 342 (545)
Q Consensus 266 V~~l~~spdg~~latg~~d---g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~ 342 (545)
+.+++|+|||++|+..... ..|.+||+.+++.......+......+.|+||+++|+.++.++.|.+||+.++.. ..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-~~ 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE-QV 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE-EE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc-EE
Confidence 7788999999998877543 4788899998876655444433333478999999999999999999999987654 33
Q ss_pred EeccCcccEEE-------------------EEEeCCCCcEEEEE----cCCCcEEEEECCCCceeeEEeccCCeeEEEEe
Q 009059 343 TFTGHSTTVMS-------------------LDFHPSKEDLLCSC----DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ 399 (545)
Q Consensus 343 ~~~~h~~~V~~-------------------l~~~p~~~~ll~s~----s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~s 399 (545)
....+...... +.|+|+++.+++.. ..+..|++||+.+++..........+..+.|+
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s 196 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR 196 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC
Confidence 33333332222 34677766555332 45678999999998877777666778999999
Q ss_pred C-CCCEEEEEECC------CeEEEEECCCCEEEEEecCC--CCCEEEEEEcCCCCEEEEEe-C-----CcEEEEEcCCCC
Q 009059 400 P-RLGRILAAAIE------NYISILDVETQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGS 464 (545)
Q Consensus 400 p-~~~~l~~~~~d------g~I~i~d~~~~~~~~~~~~h--~~~I~~l~~sp~g~~l~s~s-d-----g~I~vwd~~~~~ 464 (545)
| ++..|+..+.+ ..|.+||+..+.... +..+ ...+..++|+|+|++|+..+ + +.|++||+.++.
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE 275 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC
Confidence 9 77777776653 469999987665333 3223 23578899999999777665 3 239999998763
Q ss_pred CcceEEEEeeCCCceEEEEEcC-CCCEEEEEE----------------cCCeEEEEeCCCCeEEEeccCCC---------
Q 009059 465 KGECIHELSCTGNKFHSCVFHP-TFPSLLVIG----------------CYETLELWNMTENKTLTLSAHDK--------- 518 (545)
Q Consensus 465 ~~~~i~~~~~~~~~v~~~~~sp-~~~~l~~~~----------------~dg~I~iwd~~~~~~~~~~~h~~--------- 518 (545)
. ..+..+ . ... +.|+| +++++++++ .+..|++||+.+++...+..+..
T Consensus 276 ~-~~l~~~---~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~ 349 (396)
T 3c5m_A 276 N-EEVMVM---P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDR 349 (396)
T ss_dssp E-EEEEEC---C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBS
T ss_pred e-EEeeeC---C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccc
Confidence 2 222221 1 233 89999 999887755 23689999999887666655554
Q ss_pred --CeeEEEEeCCCCEEEEEeC-CCcEEEc
Q 009059 519 --LVSSLAASTVNGMVASASH-DKCVKIW 544 (545)
Q Consensus 519 --~V~~l~~spd~~~las~s~-Dg~I~iW 544 (545)
.+..++|+|||+.|+.++. ++...||
T Consensus 350 ~~~~~~~~~s~dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 350 QITHPHPSFTPNDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp STTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred cCCCCCceEccCCCeEEEEecCCCCceEE
Confidence 2567899999998887765 5666665
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=3.6e-20 Score=199.59 Aligned_cols=230 Identities=10% Similarity=0.058 Sum_probs=177.5
Q ss_pred CCccEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeeeEeccCc-ccEEEEEEeCCCCcEEEEEcC---CCcEEEEEC
Q 009059 304 HTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDN---NSEIRYWSI 378 (545)
Q Consensus 304 h~~~V~~l~~sp~~~~l~t~s~-dg~I~vwd~~~~~~~~~~~~~h~-~~V~~l~~~p~~~~ll~s~s~---dg~I~lwd~ 378 (545)
+..+|++++|+|||++||+++. ||+++||++..+. .+.+..|. ..+..++|+|+ .++++++. +...++|.+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCC--cEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEE
Confidence 3567999999999999999887 9999999986543 45555555 68999999998 56666664 444555544
Q ss_pred CC---CceeeEEeccCCeeEEEEeCCCCE-EEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-C-
Q 009059 379 NN---GSCAGVFKCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D- 452 (545)
Q Consensus 379 ~~---~~~~~~~~~~~~v~~l~~sp~~~~-l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-d- 452 (545)
.. +... .+.........+|+|+++. +++...++.+.+||+.+++.......+. .+++|+|||++|++++ +
T Consensus 96 ~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~ 171 (582)
T 3o4h_A 96 NTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFG 171 (582)
T ss_dssp ETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEE
T ss_pred eccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcC
Confidence 32 2222 3333345667789998765 4555566667799999987665554333 7899999999999776 5
Q ss_pred ---CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC--eEEEEeCCCCeEEEeccCCCCeeEEE---
Q 009059 453 ---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSAHDKLVSSLA--- 524 (545)
Q Consensus 453 ---g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg--~I~iwd~~~~~~~~~~~h~~~V~~l~--- 524 (545)
..|++||+.++.. ..+..+...+..++|+|||+.|+++..++ .|++||+.+++...+..|...+..++
T Consensus 172 ~~~~~i~~~d~~~g~~----~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T 3o4h_A 172 GGRVSLFTSNLSSGGL----RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTA 247 (582)
T ss_dssp TTEEEEEEEETTTCCC----EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSE
T ss_pred CCCeEEEEEcCCCCCc----eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhcc
Confidence 5899999987642 25567788899999999999999888888 89999999988876667877777777
Q ss_pred -----EeCCCCEEEEEeCCCcEEEcC
Q 009059 525 -----ASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 525 -----~spd~~~las~s~Dg~I~iWd 545 (545)
|+|||.++++++.||.++||+
T Consensus 248 ~~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 248 ITWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred ccceeEcCCCcEEEEEEcCCcEEEEE
Confidence 999999999999999999995
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=205.73 Aligned_cols=295 Identities=11% Similarity=0.041 Sum_probs=201.7
Q ss_pred cceeeeeecCCceeeEEEEeecCCCC---CeEEEEEcCCCCEEEEEeC---------CCcEEEEEcCCCeEE--EEeccC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGH---------DKKAVLWCTESFTVK--STLEEH 304 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~---~V~~l~~spdg~~latg~~---------dg~I~lwd~~~~~~~--~~l~~h 304 (545)
+..+++|+..++.. ...+.+|.. .|.+++|||||++||+++. ++.|++||+.+++.+ ..+
T Consensus 35 d~~i~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l--- 108 (719)
T 1z68_A 35 DNNIVLYNIETGQS---YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL--- 108 (719)
T ss_dssp TSCEEEEESSSCCE---EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---
T ss_pred CCCEEEEEcCCCcE---EEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---
Confidence 45788999888764 233444433 4899999999999999876 689999999998873 222
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccE-----------------EEEEEeCCCCcEEEEE
Q 009059 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSC 367 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V-----------------~~l~~~p~~~~ll~s~ 367 (545)
...+..++|+|||++|+++. ++.|++|++.++.....+..++...| .+++|+|||+.+++..
T Consensus 109 ~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~ 187 (719)
T 1z68_A 109 PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE 187 (719)
T ss_dssp CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence 24688899999999999986 78999999987664222223333323 4899999998777544
Q ss_pred cCCC---------------------------------cEEEEECCCCcee--eEE-------eccCCeeEEEEeCCCCEE
Q 009059 368 DNNS---------------------------------EIRYWSINNGSCA--GVF-------KCQSGATQMRFQPRLGRI 405 (545)
Q Consensus 368 s~dg---------------------------------~I~lwd~~~~~~~--~~~-------~~~~~v~~l~~sp~~~~l 405 (545)
..++ .|++||+.+++.. ..+ .+...+..++|+|++..+
T Consensus 188 ~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~ 267 (719)
T 1z68_A 188 FNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVC 267 (719)
T ss_dssp EECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEE
T ss_pred ECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEE
Confidence 3221 7889999987753 111 122347899999995544
Q ss_pred EEEECC----CeEEEEE----CCCCEEEEEe----cCCCCCEE-----EEEEcCCCCEEEE--Ee-CC--cEEEEEcCCC
Q 009059 406 LAAAIE----NYISILD----VETQVCRLKL----QGHKNQVH-----SVCWNTSGEYLAS--VS-DE--LVRVWSIGSG 463 (545)
Q Consensus 406 ~~~~~d----g~I~i~d----~~~~~~~~~~----~~h~~~I~-----~l~~sp~g~~l~s--~s-dg--~I~vwd~~~~ 463 (545)
++.... ..|.+|| +.+++....+ .+|...+. .+.|+|+|+.|+. .. ++ .|.+||+.++
T Consensus 268 ~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~ 347 (719)
T 1z68_A 268 LQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE 347 (719)
T ss_dssp EEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST
T ss_pred EEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC
Confidence 443322 2589999 8887765544 46777676 8899999986554 33 55 6777777655
Q ss_pred CCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-----CeEEEEeCC--CC--eEEEec----cCCCCeeEEEEeCCCC
Q 009059 464 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMT--EN--KTLTLS----AHDKLVSSLAASTVNG 530 (545)
Q Consensus 464 ~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----g~I~iwd~~--~~--~~~~~~----~h~~~V~~l~~spd~~ 530 (545)
. ...+..+...+..+.++ +++.|+..+.+ +.+++|.+. ++ +...+. +|...+..+.|+|+++
T Consensus 348 ~----~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~ 422 (719)
T 1z68_A 348 N----AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAK 422 (719)
T ss_dssp T----CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGS
T ss_pred c----eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCC
Confidence 3 23444455567777777 88888888776 677777664 34 223332 2667788999999998
Q ss_pred EEEE-EeCC--CcEEEcC
Q 009059 531 MVAS-ASHD--KCVKIWK 545 (545)
Q Consensus 531 ~las-~s~D--g~I~iWd 545 (545)
+|+. ++.+ ..+.+||
T Consensus 423 ~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 423 YYALVCYGPGIPISTLHD 440 (719)
T ss_dssp SEEEEECCBSSCEEEEEC
T ss_pred EEEEEcCCCCCCeEEEEE
Confidence 7764 3333 3456664
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=1.4e-18 Score=175.86 Aligned_cols=245 Identities=12% Similarity=0.087 Sum_probs=174.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCeEEEEeccC-CccEEEEEEcCCCCE--EEEEe-------------
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEH-TQWITDVRFSPSLSR--LATSS------------- 324 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~-~~~~~~~l~~h-~~~V~~l~~sp~~~~--l~t~s------------- 324 (545)
+...+..++|+|||++|++++.+ .|.+|++. +++........ .+.+.+++|+|++++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 44568899999999999999887 99999997 77765433211 123556899999994 45553
Q ss_pred CCCeEEEEECCC-CCeeeeEec----cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC-CCceee--EEe---ccCCe
Q 009059 325 ADRTVRVWDTEN-PDYSLRTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAG--VFK---CQSGA 393 (545)
Q Consensus 325 ~dg~I~vwd~~~-~~~~~~~~~----~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~-~~~~~~--~~~---~~~~v 393 (545)
.++.+.+|++.. +.. ...+. .+...+.+++|+|+++.++++...++.|++||+. +++... .+. +...+
T Consensus 117 ~~g~v~v~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 117 FAGYGNVFSVSETGKL-EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SCCEEEEEEECTTCCE-EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred CCceEEEEccCCCCcC-cceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence 689999999974 332 22222 2456799999999998776555557899999998 676532 333 14568
Q ss_pred eEEEEeCCCCEEEEEEC-CCeEEEEECC--CCEEE---EEec---C----CCC------CEEEEE-EcCCCCEEEEEe--
Q 009059 394 TQMRFQPRLGRILAAAI-ENYISILDVE--TQVCR---LKLQ---G----HKN------QVHSVC-WNTSGEYLASVS-- 451 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~-dg~I~i~d~~--~~~~~---~~~~---~----h~~------~I~~l~-~sp~g~~l~s~s-- 451 (545)
..++|+|++++++++.. ++.|.+|++. +++.. ..+. . |.. .+..++ |+|+|++|+++.
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 99999999999888875 6899999765 55432 1222 1 122 488999 999999888765
Q ss_pred CC-----cEEEEEcC-CCCCcceEE-EEeeCCCceEEEEEcC---CCCEEEEEEcC-CeEEEEeCCCCe
Q 009059 452 DE-----LVRVWSIG-SGSKGECIH-ELSCTGNKFHSCVFHP---TFPSLLVIGCY-ETLELWNMTENK 509 (545)
Q Consensus 452 dg-----~I~vwd~~-~~~~~~~i~-~~~~~~~~v~~~~~sp---~~~~l~~~~~d-g~I~iwd~~~~~ 509 (545)
++ .|.+|++. ++.. ..+. ....+...+..++|+| ++++|++++.+ +.|.+|+++...
T Consensus 276 ~~~~~~~~i~v~~~~~~g~~-~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 276 NKFELQGYIAGFKLRDCGSI-EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCE-EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCCCCCeEEEEEECCCCCE-EEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 33 89999996 3321 1111 2333445567889999 89999999875 799999987663
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.84 E-value=1.1e-18 Score=174.41 Aligned_cols=260 Identities=10% Similarity=0.060 Sum_probs=181.5
Q ss_pred cceeeeeecCCceeeEEEEeecCCC-CCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCeEEEEeccC------CccEEE
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEH------TQWITD 310 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~~spdg~~la-tg~~dg~I~lwd~~~~~~~~~l~~h------~~~V~~ 310 (545)
+..+.+||..++..... +..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.+..+..+ ...+.+
T Consensus 20 ~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~ 96 (349)
T 1jmx_B 20 PNNLHVVDVASDTVYKS---CVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYS 96 (349)
T ss_dssp TTEEEEEETTTTEEEEE---EECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSC
T ss_pred CCeEEEEECCCCcEEEE---EecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccc
Confidence 56788899888765433 33332 2578999999998665 4556899999999999888776532 233788
Q ss_pred EEEcCCCCEEEEEeCC------------CeEEEEECCCCCe--eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEE
Q 009059 311 VRFSPSLSRLATSSAD------------RTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 376 (545)
Q Consensus 311 l~~sp~~~~l~t~s~d------------g~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lw 376 (545)
++|+|++++|++++.+ +.|.+||+.+++. .+..+. +...+.+++|+|++. +++ ++ +.|++|
T Consensus 97 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~-~~--~~i~~~ 171 (349)
T 1jmx_B 97 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYV-AG--PDIYKM 171 (349)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEE-ES--SSEEEE
T ss_pred eEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEE-cc--CcEEEE
Confidence 9999999999998865 8999999987432 123333 344688999999987 654 43 349999
Q ss_pred ECCCCceeeEEeccC-------------------------CeeEEEEeCCCCEEEEEE-CCCeEEEEECCCCEE-EEEec
Q 009059 377 SINNGSCAGVFKCQS-------------------------GATQMRFQPRLGRILAAA-IENYISILDVETQVC-RLKLQ 429 (545)
Q Consensus 377 d~~~~~~~~~~~~~~-------------------------~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~-~~~~~ 429 (545)
|+.+++.+..+.... ....+.+.+++....... ....+..+|..+++. ...+.
T Consensus 172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (349)
T 1jmx_B 172 DVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA 251 (349)
T ss_dssp CTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE
T ss_pred eCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc
Confidence 999998877765432 223455554431110000 011222355554432 12233
Q ss_pred CCCCCEEEEEEcC-CCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 430 GHKNQVHSVCWNT-SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 430 ~h~~~I~~l~~sp-~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
.+...+..++|+| ++++++++ ++.|.+||+.++ +.+..+.. ...+..++|+|++++|++++.++.|++||+.++
T Consensus 252 ~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 252 DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR---KLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred cCCCcceeeEecCCCCCEEEEE-cCeEEEEECccC---eEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 3667889999999 99999988 889999999876 55555543 445789999999999999888899999999998
Q ss_pred eEE
Q 009059 509 KTL 511 (545)
Q Consensus 509 ~~~ 511 (545)
+.+
T Consensus 327 ~~~ 329 (349)
T 1jmx_B 327 EKV 329 (349)
T ss_dssp EEE
T ss_pred cee
Confidence 877
No 164
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=3.2e-19 Score=184.80 Aligned_cols=212 Identities=14% Similarity=0.158 Sum_probs=159.2
Q ss_pred CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC---------eeee-----EeccCccc
Q 009059 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---------YSLR-----TFTGHSTT 350 (545)
Q Consensus 285 g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~---------~~~~-----~~~~h~~~ 350 (545)
+.|++|+... . .+...+..+++++++.+|++++.|+ |+||+..... ..+. ....+...
T Consensus 23 ~~vri~~~~~-~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPE-E------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCS-S------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCcc-c------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 4688876431 1 1334578899999999999999998 8888753110 0011 11235678
Q ss_pred EEEEEEeCCCCcEEE---EEcCCCcEEEEECCCC--------ceeeEEe----ccCCeeEEEEeCC-CCEEEEEECCCeE
Q 009059 351 VMSLDFHPSKEDLLC---SCDNNSEIRYWSINNG--------SCAGVFK----CQSGATQMRFQPR-LGRILAAAIENYI 414 (545)
Q Consensus 351 V~~l~~~p~~~~ll~---s~s~dg~I~lwd~~~~--------~~~~~~~----~~~~v~~l~~sp~-~~~l~~~~~dg~I 414 (545)
|.+++|+|++..+++ +++.|+.|++||+.++ +.+..+. +...|.+++|+|+ +..|++++.||.|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 999999999876665 7888999999998754 2222222 3567999999998 7789999999999
Q ss_pred EEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC-------CCceEEEEEcC
Q 009059 415 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHP 486 (545)
Q Consensus 415 ~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~-------~~~v~~~~~sp 486 (545)
++||++++..+....+|...|.+++|+|+|++|++++ |+.|++||++ + .....+..+ ...+.++.|++
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~---~~~~~~~~~~~~~~~~~~~v~~v~w~~ 250 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L---QEKKVIPCPPFYESDHPVRVLDVLWIG 250 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C---CEEEEECCCTTCCTTSCEEEEEEEEEE
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C---cccccccCCcccCCCCceeEEEEEEec
Confidence 9999999987777778899999999999999999999 9999999997 3 233344333 23789999999
Q ss_pred CCCEEEEEE-cCC------eEEEEeCCCC
Q 009059 487 TFPSLLVIG-CYE------TLELWNMTEN 508 (545)
Q Consensus 487 ~~~~l~~~~-~dg------~I~iwd~~~~ 508 (545)
++.++++.+ .+| .+++|++...
T Consensus 251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 251 TYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CceEEEEEccCCCccCCCCceEEEEeccC
Confidence 888775544 332 4899999764
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=1.1e-18 Score=193.26 Aligned_cols=264 Identities=13% Similarity=0.077 Sum_probs=192.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCcc-----EEEEEEcCCCCEEEEEeCC---------CeEE
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSAD---------RTVR 330 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~-----V~~l~~sp~~~~l~t~s~d---------g~I~ 330 (545)
...+++|+|||++|+++ |+.|++||+.+++....+.+|... ...+.|+|||++|+.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 35679999999999886 899999999999988888777643 2447899999999998876 5667
Q ss_pred EEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-cc------------------C
Q 009059 331 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQ------------------S 391 (545)
Q Consensus 331 vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~------------------~ 391 (545)
+||+.+++ ...+..|...+...+|+|+|+.++++ .++.|++||+.+++...... .. .
T Consensus 96 ~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 96 IYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp EEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred EEECCCCc--EEEcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence 99999875 34567778889999999999887755 37899999998877554221 11 1
Q ss_pred CeeEEEEeCCCCEEEEEECCC------------------------------------eEEEEECCC---C---EEEEEec
Q 009059 392 GATQMRFQPRLGRILAAAIEN------------------------------------YISILDVET---Q---VCRLKLQ 429 (545)
Q Consensus 392 ~v~~l~~sp~~~~l~~~~~dg------------------------------------~I~i~d~~~---~---~~~~~~~ 429 (545)
....+.|+|+|++|+.+..|. .|++||+.+ + +.. .+.
T Consensus 172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~-~l~ 250 (740)
T 4a5s_A 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI-QIT 250 (740)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE-EEC
T ss_pred CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE-Eec
Confidence 113489999999998875321 588899998 7 333 333
Q ss_pred ------CCCCCEEEEEEcCCCCEEEEEe-C----CcEEEEEcCCCCC------cceEEEEeeCCCceE-----EEEEcCC
Q 009059 430 ------GHKNQVHSVCWNTSGEYLASVS-D----ELVRVWSIGSGSK------GECIHELSCTGNKFH-----SCVFHPT 487 (545)
Q Consensus 430 ------~h~~~I~~l~~sp~g~~l~s~s-d----g~I~vwd~~~~~~------~~~i~~~~~~~~~v~-----~~~~sp~ 487 (545)
+|...+..++|+|||++++... . ..|++||+.++.. ...+. -..+...+. ...|+||
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~-~~~~~~~v~~~~~~~p~fspD 329 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI-EMSTTGWVGRFRPSEPHFTLD 329 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE-EECSSSCSSSSSCCCCEECTT
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee-eccCCceEccCcCCCceEcCC
Confidence 3777899999999999776654 2 2799999988751 11111 123444443 6789999
Q ss_pred CCEEE-EEEcC-C--eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeC
Q 009059 488 FPSLL-VIGCY-E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 537 (545)
Q Consensus 488 ~~~l~-~~~~d-g--~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~ 537 (545)
|+.|+ ..+.. | .|++||+.+++...+......|..+.+ +|++.|+..+.
T Consensus 330 G~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~ 382 (740)
T 4a5s_A 330 GNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYISN 382 (740)
T ss_dssp SSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEES
T ss_pred CCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEEe
Confidence 99877 56543 3 799999999888877666666766543 44665554443
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.82 E-value=4e-18 Score=172.26 Aligned_cols=278 Identities=10% Similarity=0.101 Sum_probs=202.7
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEEcCCCeEEEEeccC----
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEH---- 304 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~----------dg~I~lwd~~~~~~~~~l~~h---- 304 (545)
+..+.+||..++... ..+..+..+ .++|+|||++|+++.. ++.|.+||..+++.+..+...
T Consensus 30 d~~v~v~D~~t~~~~---~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFL---GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp GCEEEEEETTTCCEE---EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred cCeEEEEECCCCeEE---EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 557778887777543 445555555 8999999999998862 568999999999888777532
Q ss_pred --CccEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCeeeeE-eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC
Q 009059 305 --TQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379 (545)
Q Consensus 305 --~~~V~~l~~sp~~~~l~t~s~--dg~I~vwd~~~~~~~~~~-~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~ 379 (545)
......++|+|+|++|+++.. ++.|.+||+.+.+. +.. +. +. ....+.+.|++...+++.+.||.+.+|++.
T Consensus 105 ~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~-~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 105 QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY-VEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE-EEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE-EEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence 245677999999999999874 68999999998764 554 43 22 233466788876677788889999999986
Q ss_pred C-CceeeEE------eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCE--EEEEecCC------C----CCEEEEEE
Q 009059 380 N-GSCAGVF------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQGH------K----NQVHSVCW 440 (545)
Q Consensus 380 ~-~~~~~~~------~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~--~~~~~~~h------~----~~I~~l~~ 440 (545)
. ++..... ........+.+.+++..++..+.++.|+++|+.... ....+... . .....++|
T Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~ 261 (361)
T 2oiz_A 182 EDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGL 261 (361)
T ss_dssp TTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEE
T ss_pred CCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEE
Confidence 5 5544221 112222334456777788888889999999997542 22222110 0 11112689
Q ss_pred cCCCCEEEEEe------------CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 441 NTSGEYLASVS------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 441 sp~g~~l~s~s------------dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
+|++..++++. .+.|.+||+.+. +.+..+..+. +..++|+|++++|++++. +.|.+||..++
T Consensus 262 ~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 262 HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred ecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 99988777653 237999999887 7777887766 999999999999988886 99999999999
Q ss_pred --eEE-EeccCCCCeeEEEEeCCCC
Q 009059 509 --KTL-TLSAHDKLVSSLAASTVNG 530 (545)
Q Consensus 509 --~~~-~~~~h~~~V~~l~~spd~~ 530 (545)
+.+ .+..+......++++|+|+
T Consensus 336 ~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 336 EPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEEETTSCSSEEEEEECCCSC
T ss_pred cceeeEEeccCCCCcEEEEecCCCC
Confidence 888 4457888899999999986
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.81 E-value=2.9e-18 Score=187.46 Aligned_cols=280 Identities=10% Similarity=0.054 Sum_probs=196.7
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEE--eCCCcEEEEEcCCCeEEEEeccCCccEE---------EEEEc--CCCCE-EEEE
Q 009059 258 LIPASTSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWIT---------DVRFS--PSLSR-LATS 323 (545)
Q Consensus 258 ~l~~H~~~V~~l~~spdg~~latg--~~dg~I~lwd~~~~~~~~~l~~h~~~V~---------~l~~s--p~~~~-l~t~ 323 (545)
.+.+|...|..++|++++-+++.. +.++...||....+.....+..|...+. ...|+ ||+++ |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 356788899999999887666766 5578899999655555666766766666 56665 99998 7766
Q ss_pred eC-CCeEEEEECC--C-CCeeeeEecc-----CcccEEEEEEeCCCCcEEEEEcCC----------CcEEEEECCC----
Q 009059 324 SA-DRTVRVWDTE--N-PDYSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDNN----------SEIRYWSINN---- 380 (545)
Q Consensus 324 s~-dg~I~vwd~~--~-~~~~~~~~~~-----h~~~V~~l~~~p~~~~ll~s~s~d----------g~I~lwd~~~---- 380 (545)
+. +..|.+|++. . +. ...+.. |...+..++|+|+|+.++++.. + ..|++||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~ 174 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV--PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAE-EFTGEGPSDVRRFLAAVPLDGSAAA 174 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC--CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEE-EECSSSTTCEEEEEEEEETTSTTTT
T ss_pred ECCCCeEEEEcCCCCCCCC--CEeccCCccCCCCccccCcEECCCCCEEEEEEe-cccCCCCCCceeEEEEEECCCCccc
Confidence 54 5566677765 2 22 445554 6778999999999987775543 4 5899999988
Q ss_pred --CceeeEE-eccCCeeEEEEeCCCCEEEEEECC--------CeEEEEECC-CC---EEEEEecCCCCCEEEEEEcCCCC
Q 009059 381 --GSCAGVF-KCQSGATQMRFQPRLGRILAAAIE--------NYISILDVE-TQ---VCRLKLQGHKNQVHSVCWNTSGE 445 (545)
Q Consensus 381 --~~~~~~~-~~~~~v~~l~~sp~~~~l~~~~~d--------g~I~i~d~~-~~---~~~~~~~~h~~~I~~l~~sp~g~ 445 (545)
++..... .....+..+.|+|+|++|+.++.+ ..|++||+. ++ .......+|...+..+.|+|||+
T Consensus 175 ~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~ 254 (662)
T 3azo_A 175 DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS 254 (662)
T ss_dssp CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC
T ss_pred cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe
Confidence 5554444 334557788999999999888754 379999999 56 44444455678999999999999
Q ss_pred EEEEEe-CC--cEEEEEcCCCCCcceEEEEeeCCCc--------eEEEEEcCCCCEEEEEEcCCeEEEE--eCCCCeEEE
Q 009059 446 YLASVS-DE--LVRVWSIGSGSKGECIHELSCTGNK--------FHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLT 512 (545)
Q Consensus 446 ~l~s~s-dg--~I~vwd~~~~~~~~~i~~~~~~~~~--------v~~~~~sp~~~~l~~~~~dg~I~iw--d~~~~~~~~ 512 (545)
+++++. ++ .|.+||+.++ ........+... +..++|++++..++++.. +.++|| |+.+++...
T Consensus 255 l~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~ 330 (662)
T 3azo_A 255 LIVATDRTGWWNLHRVDPATG---AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVD 330 (662)
T ss_dssp EEEEECTTSSCEEEEECTTTC---CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEE
T ss_pred EEEEECCCCCeEEEEEECCCC---ceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEE
Confidence 777777 67 5666666454 222211211111 457889999998888888 877777 777777767
Q ss_pred eccCCCCeeEE-EEeCCCCEEEEEeCCCcEEEc
Q 009059 513 LSAHDKLVSSL-AASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 513 ~~~h~~~V~~l-~~spd~~~las~s~Dg~I~iW 544 (545)
+..|...+..+ +++.+.-++++++.+....||
T Consensus 331 l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 331 AAGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp CCSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred ecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 77787778777 554333344555666555555
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.80 E-value=1.9e-17 Score=167.25 Aligned_cols=263 Identities=8% Similarity=0.057 Sum_probs=187.8
Q ss_pred CCCEEEEEe------CCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCC
Q 009059 274 DGKLLATGG------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENP 337 (545)
Q Consensus 274 dg~~latg~------~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~----------dg~I~vwd~~~~ 337 (545)
+++++++.. .|+.|.+||..+++.+..+..+..+ .++|+||+++|+++.. ++.|.+||+.+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 555655543 3679999999999999888777665 8999999999999863 678999999876
Q ss_pred CeeeeEecc------CcccEEEEEEeCCCCcEEEEEcC-CCcEEEEECCCCceeeE-EeccCCeeEEEEeCCC-CEEEEE
Q 009059 338 DYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRL-GRILAA 408 (545)
Q Consensus 338 ~~~~~~~~~------h~~~V~~l~~~p~~~~ll~s~s~-dg~I~lwd~~~~~~~~~-~~~~~~v~~l~~sp~~-~~l~~~ 408 (545)
+. +..+.. +......++|+|+++.++++... ++.|.+||+.+++.+.. +... ....+.+.|++ ..+++.
T Consensus 92 ~~-~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 92 TF-EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-GCWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp CE-EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-TEEEEEECTTSSSEEEEE
T ss_pred cE-EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-CcceeEEcCCCCeeEEEE
Confidence 64 444432 22456789999999887766544 68999999999988777 5543 33335677765 567788
Q ss_pred ECCCeEEEEECCC-CEEEEE------ecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC----
Q 009059 409 AIENYISILDVET-QVCRLK------LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---- 476 (545)
Q Consensus 409 ~~dg~I~i~d~~~-~~~~~~------~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~---- 476 (545)
+.||.+.+|++.. ++.... +..+..++ .+.+++++..++..+ ++.|.++|+..... ..+..+....
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV-KVDGPWSLLNDEDK 247 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC-EEEEEEESCCHHHH
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc-eecccccccCcccc
Confidence 8899999999865 544321 11222222 233456777766666 88999999875432 2222221110
Q ss_pred ------CceEEEEEcCCCCEEEEEEc-----------CCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 477 ------NKFHSCVFHPTFPSLLVIGC-----------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 477 ------~~v~~~~~sp~~~~l~~~~~-----------dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
.....++|+|+++.++++.. .+.|.+||+.+++.+ .+..+. +.+|+|+|||++|++++.
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~- 324 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG- 324 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-
Confidence 11123689999998888754 348999999999988 555555 999999999999998887
Q ss_pred CcEEEcC
Q 009059 539 KCVKIWK 545 (545)
Q Consensus 539 g~I~iWd 545 (545)
+.|.|||
T Consensus 325 ~~v~v~D 331 (361)
T 2oiz_A 325 GNVNVYD 331 (361)
T ss_dssp SCEEEEE
T ss_pred CeEEEEE
Confidence 9999996
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.80 E-value=6.5e-17 Score=161.13 Aligned_cols=240 Identities=15% Similarity=0.114 Sum_probs=182.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC------------------------CcEEEEEcCCCeEEEEec-cCCccEEEEEEcCCC
Q 009059 263 TSKVESCHFSPDGKLLATGGHD------------------------KKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSL 317 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~d------------------------g~I~lwd~~~~~~~~~l~-~h~~~V~~l~~sp~~ 317 (545)
-+.|.+++++|+|+++++...+ +.|.+||..+++.+..+. ++-.....|++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3569999999999999888776 479999999888877664 455678999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEe---------ccCcccEEEEEEeCCCCcEEEEEc-CCCcEEEEECCCCceeeEE
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTF---------TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVF 387 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~---------~~h~~~V~~l~~~p~~~~ll~s~s-~dg~I~lwd~~~~~~~~~~ 387 (545)
+++++...++.|++||.......+..+ .++-.....++++|++..++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999987543234444 344557899999994456666775 689999999 557766666
Q ss_pred ecc-----------CCeeEEEEeCCCCEEEEEE-CCCeEEEEECCCCEEEEEec--CCCCCEEEEEEcCCCCEEEEE---
Q 009059 388 KCQ-----------SGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV--- 450 (545)
Q Consensus 388 ~~~-----------~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~s~--- 450 (545)
... ..+..++++|+++.++++. .++.|++||..+++.+..+. .+...+..++|+| +..++..
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~ 260 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP 260 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence 422 2278999999855555555 57899999999888888774 4567899999999 4333332
Q ss_pred ----e-CCcEEEEEcCCCCCcceEEEE---eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 451 ----S-DELVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 451 ----s-dg~I~vwd~~~~~~~~~i~~~---~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
. +..|++||+.++ ..+..+ ..+...+..++++|++..+++...++.|++|++..
T Consensus 261 ~v~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CTTCSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EeccCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 2 348999999887 556555 35567789999999996666666778999999754
No 170
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=2.3e-17 Score=182.72 Aligned_cols=289 Identities=14% Similarity=0.059 Sum_probs=195.1
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCC-----eEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCCeEEEEeccC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSK-----VESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVKSTLEEH 304 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~-----V~~l~~spdg~~latg~~d---------g~I~lwd~~~~~~~~~l~~h 304 (545)
+..+++|+..++.. ...+.+|... ...++|||||++|+.++.+ +.+.+||+.+++.. .+..|
T Consensus 35 ~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~ 110 (740)
T 4a5s_A 35 ENNILVFNAEYGNS---SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERI 110 (740)
T ss_dssp TTEEEEEETTTCCE---EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCC
T ss_pred CCcEEEEECCCCce---EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccC
Confidence 45788999888864 3446666643 2447899999999998875 56779999998865 46677
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccE-----------------EEEEEeCCCCcEEEEE
Q 009059 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSC 367 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V-----------------~~l~~~p~~~~ll~s~ 367 (545)
...+..++|+|||+.||.+. |+.|.+|++.++.....+..++...+ ..+.|+|||+.+++..
T Consensus 111 ~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 111 PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence 88899999999999999984 68999999987664222333433333 3489999998777654
Q ss_pred cCCC-----------------------------------cEEEEECCC---Cce--eeEEe-------ccCCeeEEEEeC
Q 009059 368 DNNS-----------------------------------EIRYWSINN---GSC--AGVFK-------CQSGATQMRFQP 400 (545)
Q Consensus 368 s~dg-----------------------------------~I~lwd~~~---~~~--~~~~~-------~~~~v~~l~~sp 400 (545)
..++ .|++||+.+ ++. ...+. +...+..++|+|
T Consensus 190 ~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp 269 (740)
T 4a5s_A 190 FNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT 269 (740)
T ss_dssp EECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE
T ss_pred EcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC
Confidence 2222 588899988 732 22222 223378899999
Q ss_pred CCCEEEEEEC----CCeEEEEECCCCE----EEE--Ee--cCCCCCEE-----EEEEcCCCCEEE-EEe--CC--cEEEE
Q 009059 401 RLGRILAAAI----ENYISILDVETQV----CRL--KL--QGHKNQVH-----SVCWNTSGEYLA-SVS--DE--LVRVW 458 (545)
Q Consensus 401 ~~~~l~~~~~----dg~I~i~d~~~~~----~~~--~~--~~h~~~I~-----~l~~sp~g~~l~-s~s--dg--~I~vw 458 (545)
++..++.... +..|++||+.+++ +.. .+ ..|...|. .+.|+|||+.|+ ..+ +| .|++|
T Consensus 270 dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~ 349 (740)
T 4a5s_A 270 QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYF 349 (740)
T ss_dssp TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEE
Confidence 9876665543 2379999998876 221 11 34555544 788999999877 555 44 78899
Q ss_pred EcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-------CeEEEEeCCCCeEE-Eec----cCCCCeeEEEEe
Q 009059 459 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-------ETLELWNMTENKTL-TLS----AHDKLVSSLAAS 526 (545)
Q Consensus 459 d~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-------g~I~iwd~~~~~~~-~~~----~h~~~V~~l~~s 526 (545)
|+.++. .. .+......+..+.. ++++.|+..+.. ..|+..++.++... .+. .....+..+.|+
T Consensus 350 ~~~~~~---~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S 424 (740)
T 4a5s_A 350 QIDKKD---CT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFS 424 (740)
T ss_dssp ETTCSS---CE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEEC
T ss_pred ECCCCc---eE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEEC
Confidence 987652 22 33333445555442 446666666654 25666677665543 332 134678899999
Q ss_pred CCCCEEEEEeC
Q 009059 527 TVNGMVASASH 537 (545)
Q Consensus 527 pd~~~las~s~ 537 (545)
|++++++....
T Consensus 425 ~dg~~~~~~~s 435 (740)
T 4a5s_A 425 KEAKYYQLRCS 435 (740)
T ss_dssp TTSSEEEEEEC
T ss_pred CCCCEEEEEeC
Confidence 99997765543
No 171
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.78 E-value=5.6e-17 Score=162.24 Aligned_cols=252 Identities=11% Similarity=0.098 Sum_probs=177.2
Q ss_pred CeEEEEEcCCCCEEEEEe---------CCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC---C--eEE
Q 009059 265 KVESCHFSPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---R--TVR 330 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~---------~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d---g--~I~ 330 (545)
.+..+++ ||++||... .++.|.+||+.+++... + ..+..++|+|||++|+.++.+ + .|.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 3666777 888887652 25689999999877543 3 568899999999999988754 3 477
Q ss_pred EEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcC--------------------------CCcEEEEECCCCcee
Q 009059 331 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--------------------------NSEIRYWSINNGSCA 384 (545)
Q Consensus 331 vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~--------------------------dg~I~lwd~~~~~~~ 384 (545)
+|++.++.. ..... +.. +..+.|+|+++.++++... ...|++||+.+++.+
T Consensus 89 ~~~~~~g~~-~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 89 VADLETLSS-KKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEETTTTEE-EEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEECCCCce-EEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 888876543 33333 334 9999999999887766532 257999999988874
Q ss_pred eEEeccCCeeEEEEeCCCCEEEEEECCC---------eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CC-
Q 009059 385 GVFKCQSGATQMRFQPRLGRILAAAIEN---------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE- 453 (545)
Q Consensus 385 ~~~~~~~~v~~l~~sp~~~~l~~~~~dg---------~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg- 453 (545)
..+... .+..+.|+|++ .++++..++ .|.++| +++... +..+ ..+..+ +|+|++|+.++ ++
T Consensus 166 ~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~-l~~~-~~~~~~--spdg~~l~~~~~~~~ 237 (347)
T 2gop_A 166 EEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEK-MFEK-VSFYAV--DSDGERILLYGKPEK 237 (347)
T ss_dssp EEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEE-EEEE-ESEEEE--EECSSCEEEEECCSS
T ss_pred eeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEE-eccC-cceeeE--CCCCCEEEEEEcccc
Confidence 444434 78899999998 666665432 456666 555433 3334 455554 89999887766 32
Q ss_pred -------cEEEEEcCCCCCcceEEEEeeCCCceEE-EEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEE
Q 009059 454 -------LVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAA 525 (545)
Q Consensus 454 -------~I~vwd~~~~~~~~~i~~~~~~~~~v~~-~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~ 525 (545)
.|.+|| ++ ........+...+.. +.|+ ++ .+++++.++.++|| +.+++...+..+...|.+++|
T Consensus 238 ~~~~~~~~l~~~d--~~---~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~ 309 (347)
T 2gop_A 238 KYMSEHNKLYIYD--GK---EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDV 309 (347)
T ss_dssp SCCCSSCEEEEEC--SS---CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEE
T ss_pred CCccccceEEEEC--CC---ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeee
Confidence 577777 33 222223344567776 8999 88 88888899999999 876666666667888999999
Q ss_pred eCCCCEEEEEeCCCcE-EEc
Q 009059 526 STVNGMVASASHDKCV-KIW 544 (545)
Q Consensus 526 spd~~~las~s~Dg~I-~iW 544 (545)
+| .++++++.++.. .||
T Consensus 310 s~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 310 DE--IVVYLKETATRLRELF 327 (347)
T ss_dssp SS--SEEEEEECSSSCCEEE
T ss_pred eC--cEEEEEcCCCChHHhe
Confidence 99 688888777654 555
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.78 E-value=1e-16 Score=159.48 Aligned_cols=269 Identities=8% Similarity=0.024 Sum_probs=190.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
..|.+++|++++..++....++.+++| .++....+..+...+.+++|++++++++++..++.|.+||..++.. ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~-~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-KRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE-EEE
Confidence 347788999988888777788999999 3466667777777889999999999888888899999999987664 333
Q ss_pred eccCcccEEEEEEeCCCCcEEEEEcCC----CcEEEEECCCCceeeEEe---ccCCeeEEEEeCCCCEEEEEEC------
Q 009059 344 FTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAI------ 410 (545)
Q Consensus 344 ~~~h~~~V~~l~~~p~~~~ll~s~s~d----g~I~lwd~~~~~~~~~~~---~~~~v~~l~~sp~~~~l~~~~~------ 410 (545)
...+...+.++++++++. ++++...+ +.|.+||..++.....+. ....+..+.++|++..+++...
T Consensus 82 ~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp EECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred eeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 334667899999999975 55455555 689999998876553332 2345889999999765554433
Q ss_pred CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCC-CCCcceEE--EEee--CCCceEEEE
Q 009059 411 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS-GSKGECIH--ELSC--TGNKFHSCV 483 (545)
Q Consensus 411 dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~-~~~~~~i~--~~~~--~~~~v~~~~ 483 (545)
.+.|..||..+++..... .+...+..++|+|++++|+.+. ++.|.+||+.+ +.....+. .... ....+..++
T Consensus 161 ~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 239 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCC 239 (333)
T ss_dssp CEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEE
T ss_pred CceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceE
Confidence 357888887765443322 2334678999999998665554 67999999964 22111111 1111 114678899
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCC------CeeEEEEeCCCCEEEEEeCC
Q 009059 484 FHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDK------LVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 484 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~------~V~~l~~spd~~~las~s~D 538 (545)
+++++..+++...++.|.+||.+......+..+.. .+.+++|+||++.|+.++.+
T Consensus 240 ~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 240 IDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 99999977766677899999985443334433322 68999999998777666555
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.78 E-value=7.2e-16 Score=149.93 Aligned_cols=238 Identities=10% Similarity=0.155 Sum_probs=175.6
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec------cCCccEEEEEE-cCCCCEEEEEeC-CCeEEE
Q 009059 260 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQWITDVRF-SPSLSRLATSSA-DRTVRV 331 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~------~h~~~V~~l~~-sp~~~~l~t~s~-dg~I~v 331 (545)
.+|-..+.+++++++++++++...++.|.+||.. ++.+..+. +|...+.++++ .+++.++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3556779999999999988888889999999987 56665553 34467899999 467766666543 889999
Q ss_pred EECCCCCeeeeEec-cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec---cCCeeEEEEeCCCCEEEE
Q 009059 332 WDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILA 407 (545)
Q Consensus 332 wd~~~~~~~~~~~~-~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~---~~~v~~l~~sp~~~~l~~ 407 (545)
||. ++.. +..+. .+...+.++++.+++. ++++...++.|++||.. ++.+..+.. ...+..+++++++..+++
T Consensus 105 ~d~-~g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 105 YNQ-YGQF-VRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp ECT-TSCE-EEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred ECC-CCcE-EEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 994 4443 44443 3446789999999975 66677778899999965 555555542 235889999999775555
Q ss_pred EECCCeEEEEECCCCEEEEEecCC--CCCEEEEEEcCCCCEEEEEe-CC-cEEEEEcCCCCCcceEEEEeeCC--CceEE
Q 009059 408 AAIENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTG--NKFHS 481 (545)
Q Consensus 408 ~~~dg~I~i~d~~~~~~~~~~~~h--~~~I~~l~~sp~g~~l~s~s-dg-~I~vwd~~~~~~~~~i~~~~~~~--~~v~~ 481 (545)
...++.|++||.. +..+..+..+ ...+..++++++|+++++.. ++ .|.+||.. + ..+..+..+. ..+..
T Consensus 181 ~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g---~~~~~~~~~~~~~~~~~ 255 (286)
T 1q7f_A 181 DNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFD 255 (286)
T ss_dssp EGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEE
T ss_pred ECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C---CEEEEEcccCCCCccee
Confidence 5568999999985 4455556433 36789999999999888887 65 99999953 3 3455554443 34789
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 482 CVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 482 ~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
++++|+++.+++ +.++.|++|++...
T Consensus 256 i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 256 VALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 999999975544 77899999998654
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.77 E-value=7.1e-16 Score=149.98 Aligned_cols=234 Identities=12% Similarity=0.124 Sum_probs=172.6
Q ss_pred cCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEec------cCcccEEEEEEeCCCCcEEEEEcC-CCcEEE
Q 009059 303 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSKEDLLCSCDN-NSEIRY 375 (545)
Q Consensus 303 ~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~------~h~~~V~~l~~~p~~~~ll~s~s~-dg~I~l 375 (545)
++-..+.++++++++.++++...++.|.+||.. +.. +..+. ++...+..+++.+.+..++++... ++.|++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~-~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRF-KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCE-EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcE-EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 455678999999999988888889999999987 333 44442 244578999995333456656533 789999
Q ss_pred EECCCCceeeEEecc--CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec--CCCCCEEEEEEcCCCCEEEEEe
Q 009059 376 WSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 376 wd~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~s~s 451 (545)
|| .+++.+..+... ..+..+++++++..+++...++.|.+||.. ++.+..+. .+...+..++++++|+++++..
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence 99 567766666432 458899999998766655668899999965 44455553 3456789999999999887776
Q ss_pred -CCcEEEEEcCCCCCcceEEEEeeC--CCceEEEEEcCCCCEEEEEEcCC-eEEEEeCCCCeEEEeccCC--CCeeEEEE
Q 009059 452 -DELVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTLTLSAHD--KLVSSLAA 525 (545)
Q Consensus 452 -dg~I~vwd~~~~~~~~~i~~~~~~--~~~v~~~~~sp~~~~l~~~~~dg-~I~iwd~~~~~~~~~~~h~--~~V~~l~~ 525 (545)
++.|++||... ..+..+... ...+..+++++++..+++...++ .|.+||........+..+. ..+.++++
T Consensus 183 ~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~ 258 (286)
T 1q7f_A 183 RAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVAL 258 (286)
T ss_dssp GGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEE
T ss_pred CCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEE
Confidence 88999999743 344555433 25789999999998777766675 9999997654444444433 34789999
Q ss_pred eCCCCEEEEEeCCCcEEEcC
Q 009059 526 STVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 526 spd~~~las~s~Dg~I~iWd 545 (545)
+|+|+++++ +.|++|++|+
T Consensus 259 ~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 259 MDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp ETTTEEEEE-ETTTEEEEEE
T ss_pred CCCCcEEEE-CCCCeEEEEE
Confidence 999987777 6799999995
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.77 E-value=2.8e-15 Score=159.53 Aligned_cols=300 Identities=11% Similarity=0.012 Sum_probs=219.0
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCeEEEEeccCCccEEEEEEc--
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFS-- 314 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~--~~~~~~~l~~h~~~V~~l~~s-- 314 (545)
+..+.++|..++.....+. . ...+..+.|+|||++|++++.|+.|.+||+. +++.+..+.... ....++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~---~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~ 250 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLD---T-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKM 250 (567)
T ss_dssp TTEEEEEETTTCCEEEEEE---C-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCS
T ss_pred CCeEEEEECCCCeEEEEEe---C-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccc
Confidence 4567888888876554443 2 2357799999999999999999999999995 888888876544 36789999
Q ss_pred --CCCCEEEEEeC-CCeEEEEECCCCCeeeeEecc----------Ccc-cEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 315 --PSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------HST-TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 315 --p~~~~l~t~s~-dg~I~vwd~~~~~~~~~~~~~----------h~~-~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
|||++++++.. ++.|.|+|..+.+. +..+.- |.. .+..+.+++++..+++....+|.|.++|...
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~ 329 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD 329 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC
T ss_pred cCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCC
Confidence 69998888765 58999999988664 444331 112 5788889998888888888889999999987
Q ss_pred Cceee--EEeccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecC-----CCCCEEEEEEcCCC-CEEEEEe
Q 009059 381 GSCAG--VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG-----HKNQVHSVCWNTSG-EYLASVS 451 (545)
Q Consensus 381 ~~~~~--~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~-----h~~~I~~l~~sp~g-~~l~s~s 451 (545)
.+... .+........+.|+|++.+++++.. ++.|.++|+.+++.+..+.. |.+.-..+ ++|++ .+++++.
T Consensus 330 ~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~ 408 (567)
T 1qks_A 330 LNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSH 408 (567)
T ss_dssp SSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEB
T ss_pred CccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCC
Confidence 64333 3334455778999999999888775 78999999999987766643 33222222 57874 4555554
Q ss_pred --CCcEEEEEcCCCCC----cceEEEEeeCCCceEEEEEcCCCCEEEEEEc-------CCeEEEEeCCCC-----e-E-E
Q 009059 452 --DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIGC-------YETLELWNMTEN-----K-T-L 511 (545)
Q Consensus 452 --dg~I~vwd~~~~~~----~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~-------dg~I~iwd~~~~-----~-~-~ 511 (545)
++.|.++|..+... .+.+.++......-..+.++|+++++++... .++|.+||+.+. . . .
T Consensus 409 ~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~ 488 (567)
T 1qks_A 409 MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFK 488 (567)
T ss_dssp SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEE
T ss_pred CCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcE
Confidence 67999999987332 4667777765544455778999999998773 359999999876 2 1 1
Q ss_pred Eec--------cCCCCeeEEEEeCCCCEEEEEeC-----CCcEEEcC
Q 009059 512 TLS--------AHDKLVSSLAASTVNGMVASASH-----DKCVKIWK 545 (545)
Q Consensus 512 ~~~--------~h~~~V~~l~~spd~~~las~s~-----Dg~I~iWd 545 (545)
.+. .....+..+.|+++|++|..+.. ++.|.|+|
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 489 TLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp EECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred EeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 221 12457899999999997776633 67888765
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.75 E-value=4.7e-16 Score=154.87 Aligned_cols=234 Identities=10% Similarity=0.068 Sum_probs=173.0
Q ss_pred CccEEEEEEcCCCCEEEEEeCC------------------------CeEEEEECCCCCeeeeEec-cCcccEEEEEEeCC
Q 009059 305 TQWITDVRFSPSLSRLATSSAD------------------------RTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPS 359 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~d------------------------g~I~vwd~~~~~~~~~~~~-~h~~~V~~l~~~p~ 359 (545)
-+.+.+|+++++|+++++...+ +.|.+||..+++. +..+. ++-..+..++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI-LQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE-EEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE-EeccCCCccCCceEEEECCC
Confidence 4569999999999998888777 4799999987775 34333 44567899999999
Q ss_pred CCcEEEEEcCCCcEEEEECCCCc-eeeEEec----------cCCeeEEEEeC-CCCEEEEEE-CCCeEEEEECCCCEEEE
Q 009059 360 KEDLLCSCDNNSEIRYWSINNGS-CAGVFKC----------QSGATQMRFQP-RLGRILAAA-IENYISILDVETQVCRL 426 (545)
Q Consensus 360 ~~~ll~s~s~dg~I~lwd~~~~~-~~~~~~~----------~~~v~~l~~sp-~~~~l~~~~-~dg~I~i~d~~~~~~~~ 426 (545)
+. ++++...++.|++||..... .+..+.. ...+..++++| ++..+++.+ .++.|++|| .++..+.
T Consensus 102 g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 102 GN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp SC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred CC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 86 66688888999999986542 4444421 12478999999 555555554 589999999 5566666
Q ss_pred EecCC----------CCCEEEEEEcCC-CCEEEEEe-CCcEEEEEcCCCCCcceEEEEe--eCCCceEEEEEcCCCCEEE
Q 009059 427 KLQGH----------KNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLL 492 (545)
Q Consensus 427 ~~~~h----------~~~I~~l~~sp~-g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~--~~~~~v~~~~~sp~~~~l~ 492 (545)
.+... -.....++++|+ +.++++.. ++.|++||..++ ..+..+. .+...+..++|+| +..+.
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---~~~~~~~~~~~~~~~~~~~~~p-g~~~~ 255 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---EFVREIKHASFGRNVFAISYIP-GFLFA 255 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---cEEEEEeccccCCCcceeeecC-CEEEE
Confidence 65422 234899999998 66666555 779999999866 5555553 3456788999999 32222
Q ss_pred EE-------EcCCeEEEEeCCCCeEEEe----ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 493 VI-------GCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 493 ~~-------~~dg~I~iwd~~~~~~~~~----~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+. ..+..|++||+.+++.+.. .++...+..|+++|+|.++++...+++|++|+
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 22 2234899999999988844 35777899999999998888888899999985
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=6.9e-16 Score=154.26 Aligned_cols=249 Identities=17% Similarity=0.182 Sum_probs=171.5
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCC---C--cEEEEEcCCCeEEEEeccCCccEEEEEE
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD---K--KAVLWCTESFTVKSTLEEHTQWITDVRF 313 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~d---g--~I~lwd~~~~~~~~~l~~h~~~V~~l~~ 313 (545)
+..+.+|+...+... .+ ..+.+++|||||++||.++.+ + .|.+|++.+++.......+ . +..++|
T Consensus 42 ~~~l~~~d~~~~~~~----~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~w 111 (347)
T 2gop_A 42 ENTIVIENLKNNARR----FI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEW 111 (347)
T ss_dssp EEEEEEEETTTCCEE----EE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEE
T ss_pred cceEEEEeCCCCceE----Ec----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeE
Confidence 455667777766421 22 468899999999999987754 2 4888898888776555443 3 999999
Q ss_pred cCCCCEEEEEeCC---------------------------CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEE
Q 009059 314 SPSLSRLATSSAD---------------------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 366 (545)
Q Consensus 314 sp~~~~l~t~s~d---------------------------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s 366 (545)
+||++.|+.++.+ ..|.+||+.++.. +..+.. . .+..+.|+|++ ++++
T Consensus 112 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg--~~~~ 186 (347)
T 2gop_A 112 NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK--IVVN 186 (347)
T ss_dssp CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE--EEEE
T ss_pred CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe--EEEE
Confidence 9999999888642 5789999987653 244443 3 78899999998 5556
Q ss_pred EcCCC---------cEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC--------CeEEEEECCCCEEEEEec
Q 009059 367 CDNNS---------EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQ 429 (545)
Q Consensus 367 ~s~dg---------~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d--------g~I~i~d~~~~~~~~~~~ 429 (545)
+..+. .|+++| +++....... ..+.. ++|+|..|+.++.+ ..|++|| +++......
T Consensus 187 ~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~ 259 (347)
T 2gop_A 187 VPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD 259 (347)
T ss_dssp EECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST
T ss_pred EecccccccccccccEEEeC--CCceEEeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc
Confidence 64432 355555 5554443333 33333 49999988887754 3788888 565555455
Q ss_pred CCCCCEEE-EEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeE-EEEeCC
Q 009059 430 GHKNQVHS-VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL-ELWNMT 506 (545)
Q Consensus 430 ~h~~~I~~-l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I-~iwd~~ 506 (545)
.+...+.. +.|+ ++ +++++. ++.++|| +.++ .. ..+..+...|..+.|+| ..+++++.++.. .||.+.
T Consensus 260 ~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g---~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 260 EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG---EI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS---SE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC---ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 56778886 9999 88 777777 8899999 8743 33 33334577899999999 667777777643 666655
Q ss_pred CCeEEEeccCCCC
Q 009059 507 ENKTLTLSAHDKL 519 (545)
Q Consensus 507 ~~~~~~~~~h~~~ 519 (545)
++...+..|...
T Consensus 331 -g~~~~lt~~n~~ 342 (347)
T 2gop_A 331 -GEEKQLTDYNDP 342 (347)
T ss_dssp -SSEEECCCTTST
T ss_pred -CcEEEeccccHh
Confidence 655566666543
No 178
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.75 E-value=1.1e-16 Score=162.61 Aligned_cols=258 Identities=11% Similarity=0.093 Sum_probs=176.4
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEE--EcCCCC
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR--FSPSLS 318 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~--~sp~~~ 318 (545)
.+.+|+..++.. .....+|...+..++|+|||+.|+.++.++.|++||+.+++....+..+...+.... ++++++
T Consensus 61 ~l~~~d~~~g~~---~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~ 137 (388)
T 3pe7_A 61 NYYLLDLNTQVA---TQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCT 137 (388)
T ss_dssp EEEEEETTTCEE---EECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSS
T ss_pred eEEEEeCCCCce---EEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCC
Confidence 345566666542 344556666666789999999999999999999999999988777776666665444 489999
Q ss_pred EEEEE----------------------eCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeC-CCCcEEEEEcC-----C
Q 009059 319 RLATS----------------------SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDN-----N 370 (545)
Q Consensus 319 ~l~t~----------------------s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~ll~s~s~-----d 370 (545)
+++.. ..+..|.+||+.++. ...+..+...+..+.|+| ++..++++... .
T Consensus 138 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~ 215 (388)
T 3pe7_A 138 KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVD 215 (388)
T ss_dssp EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSS
T ss_pred eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCc
Confidence 88753 244789999999875 445555677899999999 88777655542 3
Q ss_pred CcEEEEECCCCceeeEEeccC--CeeEEEEeCCCCEEEEEEC-CC----eEEEEECCCCEEEE--EecCCCCC---EEEE
Q 009059 371 SEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAAAI-EN----YISILDVETQVCRL--KLQGHKNQ---VHSV 438 (545)
Q Consensus 371 g~I~lwd~~~~~~~~~~~~~~--~v~~l~~sp~~~~l~~~~~-dg----~I~i~d~~~~~~~~--~~~~h~~~---I~~l 438 (545)
..|.++|+..+.......... .+..+.|+|+++.|+..+. ++ .|++||+.+++... .+.++... ...+
T Consensus 216 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~ 295 (388)
T 3pe7_A 216 ARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGS 295 (388)
T ss_dssp CSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSS
T ss_pred ceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCC
Confidence 478888987665444333332 3677899999998866554 22 39999999886433 33321000 1123
Q ss_pred EEcCCCCEEEEE---------e-CCcEEEEEcCCCCCcceEEEEeeCCC-----------ceEEEEEcCCCCEEEEEEc-
Q 009059 439 CWNTSGEYLASV---------S-DELVRVWSIGSGSKGECIHELSCTGN-----------KFHSCVFHPTFPSLLVIGC- 496 (545)
Q Consensus 439 ~~sp~g~~l~s~---------s-dg~I~vwd~~~~~~~~~i~~~~~~~~-----------~v~~~~~sp~~~~l~~~~~- 496 (545)
.|+|+|+.|+.. . +..|++||+.++. +..+..+.. .+..++|+|+++.|+..+.
T Consensus 296 ~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~ 371 (388)
T 3pe7_A 296 LMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT----QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV 371 (388)
T ss_dssp EEEEEECCC------------CCCCEEEEEETTTTE----EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred eEccCCCcceeEeeeccccccCCCCEEEEEeccCCc----eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecC
Confidence 689999887753 2 5589999998752 234444444 5788899999998887775
Q ss_pred CC--eEEEEeCCC
Q 009059 497 YE--TLELWNMTE 507 (545)
Q Consensus 497 dg--~I~iwd~~~ 507 (545)
++ .|+++++..
T Consensus 372 ~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 372 HGKPALYLATLPE 384 (388)
T ss_dssp TSSCEEEEEECCG
T ss_pred CCceeEEEEECCh
Confidence 44 455555543
No 179
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.75 E-value=3.3e-14 Score=138.44 Aligned_cols=275 Identities=9% Similarity=-0.029 Sum_probs=194.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEE-EeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 009059 259 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 337 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~-~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~ 337 (545)
+..+...+.++++.++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|..||.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 34556789999999999988776667899999988 55443 223355779999999999988887778899999986 3
Q ss_pred CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccCCeeEEEEeCCCCEEEEEECCCeEE
Q 009059 338 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 338 ~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
......+......+.++++.+++ .++++...++.|..||. +++...... ....+..+++.+++..+++...++.|.
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred cEEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 32222222345678999999986 45556666789999998 555443221 224588999999976555555578999
Q ss_pred EEECCCCEEEEE-ecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 416 ILDVETQVCRLK-LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 416 i~d~~~~~~~~~-~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
+||. +++.... +..+...+.+++++++|.++++.. ++.|.+||. ++.. ...........+..+++++++..+++
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~--~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI--TEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE--EEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE--EEEECCCCCCCceeEEECCCCCEEEe
Confidence 9999 6654432 334456789999999999777766 779999998 5431 11122334567899999999984444
Q ss_pred EEcCCeEEEEeCCCCeEEEe--ccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 494 IGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 494 ~~~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
...++.|.+||. ++....+ ..+...+.++++ +++.++++...++.+++
T Consensus 242 ~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 242 EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence 446789999998 4554433 345577999999 88887777655554443
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.74 E-value=1.6e-16 Score=173.69 Aligned_cols=264 Identities=10% Similarity=0.042 Sum_probs=176.6
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeE---------EEEEc--CCCCE-EEEEeC-CCcEEEEEcC--CCeEEEEecc--
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVE---------SCHFS--PDGKL-LATGGH-DKKAVLWCTE--SFTVKSTLEE-- 303 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~---------~l~~s--pdg~~-latg~~-dg~I~lwd~~--~~~~~~~l~~-- 303 (545)
..++|....+.. .+.+..|...|. ...|+ |||++ |+.++. +..|.+|++. .......+..
T Consensus 48 ~~~l~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~ 124 (662)
T 3azo_A 48 RATLVRRRADGA---EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS 124 (662)
T ss_dssp EEEEEEECTTSC---EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC
T ss_pred cEEEEEECCCCC---cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc
Confidence 445555433321 344556665655 56565 99998 776654 4567777765 2033445554
Q ss_pred ---CCccEEEEEEcCCCCEEEEEeCC----------CeEEEEECCC------CCeeeeEec-cCcccEEEEEEeCCCCcE
Q 009059 304 ---HTQWITDVRFSPSLSRLATSSAD----------RTVRVWDTEN------PDYSLRTFT-GHSTTVMSLDFHPSKEDL 363 (545)
Q Consensus 304 ---h~~~V~~l~~sp~~~~l~t~s~d----------g~I~vwd~~~------~~~~~~~~~-~h~~~V~~l~~~p~~~~l 363 (545)
|...+.+++|+|||++|++++.+ ..|.+||+.+ +. ...+. .+...+..++|+|||+.+
T Consensus 125 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~SpDG~~l 202 (662)
T 3azo_A 125 AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA--VRELSDDAHRFVTGPRLSPDGRQA 202 (662)
T ss_dssp CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG--SEESSCSCSSEECCCEECTTSSEE
T ss_pred cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc--eeEEEecCCCcccCceECCCCCEE
Confidence 67789999999999999998877 5899999987 33 44555 566788899999999877
Q ss_pred EEEEcCC-------CcEEEEECC-CC---ceeeEEec-cCCeeEEEEeCCCCEEEEEECCC--eEEEEECCCCEEEEEec
Q 009059 364 LCSCDNN-------SEIRYWSIN-NG---SCAGVFKC-QSGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQ 429 (545)
Q Consensus 364 l~s~s~d-------g~I~lwd~~-~~---~~~~~~~~-~~~v~~l~~sp~~~~l~~~~~dg--~I~i~d~~~~~~~~~~~ 429 (545)
+++.... ..|++||+. ++ +....... ...+..+.|+|++..++++..++ .|++||+.+++......
T Consensus 203 a~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~ 282 (662)
T 3azo_A 203 VWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR 282 (662)
T ss_dssp EEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC
T ss_pred EEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc
Confidence 7555332 479999999 56 44444443 46789999999999666666677 78888887776554333
Q ss_pred CCCCC--------EEEEEEcCCCCEEEEEeCCcEEEE--EcCCCCCcceEEEEeeCCCceEEE-EEcCCCCEEEEEEcCC
Q 009059 430 GHKNQ--------VHSVCWNTSGEYLASVSDELVRVW--SIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYE 498 (545)
Q Consensus 430 ~h~~~--------I~~l~~sp~g~~l~s~sdg~I~vw--d~~~~~~~~~i~~~~~~~~~v~~~-~~sp~~~~l~~~~~dg 498 (545)
.+... +..++|+|++++++++.++.++|| |+.++ .+..+..+...+..+ .++.+.-.+++++.+.
T Consensus 283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~----~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~ 358 (662)
T 3azo_A 283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESG----ELVDAAGPWTEWAATLTVSGTRAVGVAASPRT 358 (662)
T ss_dssp CSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTT----EEEECCSSCCEEEEEEEEETTEEEEEEEETTE
T ss_pred ccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCC----cEEEecCCCCeEEEEEecCCCEEEEEEcCCCC
Confidence 33222 567899999999888877777888 54433 355666666677766 4443332233333333
Q ss_pred --eEEEEeCCCCeEEEe
Q 009059 499 --TLELWNMTENKTLTL 513 (545)
Q Consensus 499 --~I~iwd~~~~~~~~~ 513 (545)
.|++||+.+++...+
T Consensus 359 ~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 359 AYEVVELDTVTGRARTI 375 (662)
T ss_dssp EEEEEEEETTTCCEEEE
T ss_pred CCEEEEEECCCCceEEe
Confidence 677778888876644
No 181
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.74 E-value=1.3e-14 Score=144.20 Aligned_cols=244 Identities=13% Similarity=0.115 Sum_probs=175.9
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC----CeEEE
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRV 331 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d----g~I~v 331 (545)
+..+..+...+.+++|+++|++++++..++.|.+||..+++.......+...+.+++|+++++++++...+ +.|.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence 45566777889999999999988888889999999998887765554567789999999999988877666 68999
Q ss_pred EECCCCCeeeeEec--cCcccEEEEEEeCCCCcEEEEEcC------CCcEEEEECCCCceeeEEeccCCeeEEEEeCCCC
Q 009059 332 WDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 403 (545)
Q Consensus 332 wd~~~~~~~~~~~~--~h~~~V~~l~~~p~~~~ll~s~s~------dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~ 403 (545)
||..++.. ...+. .+...+.+++++|++. ++++... .+.|..||..+++..........+..++|+|+++
T Consensus 117 ~d~~~~~~-~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 117 ATENGDNL-QDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK 194 (333)
T ss_dssp ECTTSCSC-EEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred EeCCCCEE-EEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCC
Confidence 99987654 22222 2445799999999975 4445442 3567777776655544444445678999999988
Q ss_pred EEEEEE-CCCeEEEEECCC-CEEEE--------EecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEE
Q 009059 404 RILAAA-IENYISILDVET-QVCRL--------KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 472 (545)
Q Consensus 404 ~l~~~~-~dg~I~i~d~~~-~~~~~--------~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~ 472 (545)
.++++. .++.|.+||+.+ +..+. .+.++ ..+..++++++|+++++.. ++.|.+||.. + ..+..+
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g---~~~~~~ 269 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G---YPIGQI 269 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-S---CEEEEE
T ss_pred EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-C---CEEEEE
Confidence 776665 478999999963 22111 12222 4678899999999888776 7899999974 3 344455
Q ss_pred eeCCC------ceEEEEEcCCCCEEEEEEcCC------eEEEEeCC
Q 009059 473 SCTGN------KFHSCVFHPTFPSLLVIGCYE------TLELWNMT 506 (545)
Q Consensus 473 ~~~~~------~v~~~~~sp~~~~l~~~~~dg------~I~iwd~~ 506 (545)
..... .+.+++|++++..|++++.++ .|+.+++.
T Consensus 270 ~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 270 LIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp ECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred EcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 43332 588999999988888777663 45555543
No 182
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.73 E-value=3.4e-15 Score=148.60 Aligned_cols=251 Identities=10% Similarity=0.023 Sum_probs=188.3
Q ss_pred CCCcEEEEEcCCCeEEEEec------cCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEE
Q 009059 283 HDKKAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 356 (545)
Q Consensus 283 ~dg~I~lwd~~~~~~~~~l~------~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~ 356 (545)
.++.|.+||.++++....+. ........+.+. +++++++...++.|.+||..+++. +..+. .......+++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-~~~i~-~~~~p~~i~~ 91 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-VGRIT-GFTSPRYIHF 91 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-EEEEE-CCSSEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-EEEcC-CCCCCcEEEE
Confidence 37899999999998876542 122446778874 445555666679999999998775 55554 3467889999
Q ss_pred eCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC------CeeEEEEeCCCCEEEEEE--CCCeEEEEECCCCEEEEEe
Q 009059 357 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------GATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKL 428 (545)
Q Consensus 357 ~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~------~v~~l~~sp~~~~l~~~~--~dg~I~i~d~~~~~~~~~~ 428 (545)
++++ .++++...++.|.+||+.+++....+.... ....+++ +++.++++. .++.|.+||+.+++.+..+
T Consensus 92 ~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 92 LSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp EETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred eCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 8886 666566578999999999999888877655 5667777 456777776 3889999999999888877
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-C----------CcEEEEEcCCCCCcceEEEEeeC-CCceEEEEEcCCCCEEEEEEc
Q 009059 429 QGHKNQVHSVCWNTSGEYLASVS-D----------ELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGC 496 (545)
Q Consensus 429 ~~h~~~I~~l~~sp~g~~l~s~s-d----------g~I~vwd~~~~~~~~~i~~~~~~-~~~v~~~~~sp~~~~l~~~~~ 496 (545)
.. ......++++|+|++++++. + +.|.+||..++ .....+... ......++|+|++++|+++..
T Consensus 169 ~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 169 TI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp EC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---EEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred Ec-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---eEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 64 34567899999999777766 4 68999999876 444444432 346899999999998888765
Q ss_pred CCeEEEEeCCCCeEEE--e-ccCCCCeeEEEEeCC-CCEEEEE----eCCCcEEEcC
Q 009059 497 YETLELWNMTENKTLT--L-SAHDKLVSSLAASTV-NGMVASA----SHDKCVKIWK 545 (545)
Q Consensus 497 dg~I~iwd~~~~~~~~--~-~~h~~~V~~l~~spd-~~~las~----s~Dg~I~iWd 545 (545)
.|.+||..+++... + ..+......++++|+ +.++++. ..++.|.+||
T Consensus 245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred --EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 89999998887641 1 122467899999995 5555555 5688999986
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.73 E-value=7e-16 Score=170.04 Aligned_cols=244 Identities=8% Similarity=-0.008 Sum_probs=175.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCe--------
Q 009059 262 STSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------- 328 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg-----~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~-------- 328 (545)
|...+..++|||||++||.+..++ .|++||+.+++.+.....+ ..+..++|+||++.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence 444578899999999999876543 8999999999887543222 22677999999999999988766
Q ss_pred --------EEEEECCCCCee-eeE--eccCcccEEEEEEeCCCCcEEEEEcC----CCcEEEEECCC------Cc-eeeE
Q 009059 329 --------VRVWDTENPDYS-LRT--FTGHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINN------GS-CAGV 386 (545)
Q Consensus 329 --------I~vwd~~~~~~~-~~~--~~~h~~~V~~l~~~p~~~~ll~s~s~----dg~I~lwd~~~------~~-~~~~ 386 (545)
|++|++.++... ... ...|...+..+.|+|+++.++++... +..|++||+.+ +. ....
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 999999876531 122 23355668899999999888766542 56899999986 43 2344
Q ss_pred EeccCCeeEEEEeCCCCEEEEEECC----CeEEEEECCCCE--EEEEecCCCC--CEEEEEEcCCCCEEEEEe-CC--cE
Q 009059 387 FKCQSGATQMRFQPRLGRILAAAIE----NYISILDVETQV--CRLKLQGHKN--QVHSVCWNTSGEYLASVS-DE--LV 455 (545)
Q Consensus 387 ~~~~~~v~~l~~sp~~~~l~~~~~d----g~I~i~d~~~~~--~~~~~~~h~~--~I~~l~~sp~g~~l~s~s-dg--~I 455 (545)
+..........|+++++.|+..+.. +.|.+||+.++. ....+..|.. .+..++|++++.++++.. ++ .|
T Consensus 282 l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l 361 (710)
T 2xdw_A 282 LIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL 361 (710)
T ss_dssp EECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEE
T ss_pred eeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEE
Confidence 4333322233588998988887763 369999998764 1233444443 688899997777777777 76 56
Q ss_pred EEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC----CeEEEEeCCCCe
Q 009059 456 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENK 509 (545)
Q Consensus 456 ~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d----g~I~iwd~~~~~ 509 (545)
.+|++.++ ..+..+..+...+..+.++|++..++....+ +.|++||+.+++
T Consensus 362 ~~~~~~~g---~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 362 QLHDLATG---ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTTC---CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCCC---CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 77787565 4556666667778899999999877655433 589999998876
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.72 E-value=5.3e-15 Score=144.65 Aligned_cols=242 Identities=10% Similarity=0.058 Sum_probs=177.1
Q ss_pred eecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 009059 258 LIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 336 (545)
Q Consensus 258 ~l~~H~~~V~~l~~spdg~-~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~ 336 (545)
.+..+.....+++|+|+|+ +++++..++.|.+|+..++ ...+..+...+.+++|+++++++++...++.|.+||..+
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 3445566688999999998 7888888999999999887 556666778899999999999888777778999999977
Q ss_pred CCeeeeEeccC----cccEEEEEEeCCCCcEEEE----Ec-------------CCCcEEEEECCCCceeeEEeccCCeeE
Q 009059 337 PDYSLRTFTGH----STTVMSLDFHPSKEDLLCS----CD-------------NNSEIRYWSINNGSCAGVFKCQSGATQ 395 (545)
Q Consensus 337 ~~~~~~~~~~h----~~~V~~l~~~p~~~~ll~s----~s-------------~dg~I~lwd~~~~~~~~~~~~~~~v~~ 395 (545)
+... ...... ...+..++++|+|. ++++ +. ..+.|..++.. ++.............
T Consensus 100 g~~~-~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g 176 (296)
T 3e5z_A 100 GEWE-SIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG 176 (296)
T ss_dssp CCEE-EEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE
T ss_pred CcEE-EEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc
Confidence 6642 221111 13467899999975 5545 22 13466667665 554444444455789
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECC-CCEE---EEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEE
Q 009059 396 MRFQPRLGRILAAAIENYISILDVE-TQVC---RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg~I~i~d~~-~~~~---~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~ 471 (545)
++|+|+++.+++...++.|++||+. ++.. ...+..+...+.+++++++|+++++. ++.|.+||.. + ..+..
T Consensus 177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g---~~~~~ 251 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-G---DELGR 251 (296)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-S---CEEEE
T ss_pred EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-C---CEEEE
Confidence 9999999888555568899999986 4543 33333355667889999999987777 8899999975 3 55666
Q ss_pred EeeCCCceEEEEE-cCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 472 LSCTGNKFHSCVF-HPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 472 ~~~~~~~v~~~~~-sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
+..+.. +.+++| .++++.|++++.+ .+..++.++.++.
T Consensus 252 ~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 252 VLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp EECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred EECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 666666 899999 5899988888875 5667777666543
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.71 E-value=1.3e-14 Score=141.94 Aligned_cols=238 Identities=9% Similarity=0.071 Sum_probs=171.3
Q ss_pred EEEEeccCCccEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEE
Q 009059 297 VKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 375 (545)
Q Consensus 297 ~~~~l~~h~~~V~~l~~sp~~~-~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~l 375 (545)
.+..+..+.....+++|+|+++ +++++..++.|.+|+..++ ...+..+...+.++++++++. ++++...++.|.+
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLER 94 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEEE
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCc-EEEEecCCCeEEE
Confidence 3344555667788999999998 7788888999999999875 455566777899999999975 5556666789999
Q ss_pred EECCCCceeeEEec-----cCCeeEEEEeCCCCEEEEE----E-------------CCCeEEEEECCCCEEEEEecCCCC
Q 009059 376 WSINNGSCAGVFKC-----QSGATQMRFQPRLGRILAA----A-------------IENYISILDVETQVCRLKLQGHKN 433 (545)
Q Consensus 376 wd~~~~~~~~~~~~-----~~~v~~l~~sp~~~~l~~~----~-------------~dg~I~i~d~~~~~~~~~~~~h~~ 433 (545)
||..+++....... ...+..++++|+|..+++. + ..+.|..++.. ++. ..+..+..
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~ 172 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRV 172 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCS
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCC
Confidence 99988876544322 1245679999998766652 2 13577777776 443 33445667
Q ss_pred CEEEEEEcCCCCEEEEEe-CCcEEEEEcC-CCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 434 QVHSVCWNTSGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~s~s-dg~I~vwd~~-~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
....++|+|++++|++.. ++.|.+|++. ++........+......+..++++++|+.+ ++. ++.|.+||.......
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~-v~~-~~~v~~~~~~g~~~~ 250 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIW-ASA-GDGVHVLTPDGDELG 250 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEE-EEE-TTEEEEECTTSCEEE
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEE-EEc-CCeEEEECCCCCEEE
Confidence 789999999999986555 7799999997 332101122223345566789999999844 444 889999999744333
Q ss_pred EeccCCCCeeEEEE-eCCCCEEEEEeCCCcEEE
Q 009059 512 TLSAHDKLVSSLAA-STVNGMVASASHDKCVKI 543 (545)
Q Consensus 512 ~~~~h~~~V~~l~~-spd~~~las~s~Dg~I~i 543 (545)
.+..+.. +++++| .|+++.|++++.++.+++
T Consensus 251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 251 RVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp EEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred EEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 6666666 999999 589999999888876554
No 186
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.71 E-value=9.4e-15 Score=145.39 Aligned_cols=280 Identities=8% Similarity=-0.048 Sum_probs=193.2
Q ss_pred ccceeeeeecCCceeeEEEEe---ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 238 RDRVGRSAEVGKGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~---l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
.+..+.++|..++.....+.. -+........+++. +++++++...++.|.+||..+++.+.++. .......++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 356777788777653222100 00122346778875 45566666667999999999999988885 34668999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCc-----ccEEEEEEeCCCCcEEEEEc-CCCcEEEEECCCCceeeEEe
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-----TTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFK 388 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~-----~~V~~l~~~p~~~~ll~s~s-~dg~I~lwd~~~~~~~~~~~ 388 (545)
++++.+++...++.|.+||..+.+. ...+.... .....+++ ++..++++.. .++.|.+||+.+++.+..+.
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~~-~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYEI-TGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTEE-EEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred CCCeEEEEECCCCeEEEEECCCCeE-EEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 8885444444899999999998764 43433222 14556777 3456665654 48899999999999988888
Q ss_pred ccCCeeEEEEeCCCCEEEEEECC----------CeEEEEECCCCEEEEEecCC-CCCEEEEEEcCCCCEEEEEeCCcEEE
Q 009059 389 CQSGATQMRFQPRLGRILAAAIE----------NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVSDELVRV 457 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~~~d----------g~I~i~d~~~~~~~~~~~~h-~~~I~~l~~sp~g~~l~s~sdg~I~v 457 (545)
.......+.+++++..++++..+ +.|.+||..+++....+... ......++|+|++++|+++.. .|.+
T Consensus 170 ~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~ 248 (328)
T 3dsm_A 170 IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWR 248 (328)
T ss_dssp CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEE
T ss_pred cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEE
Confidence 77778899999997655544443 78999999999887766532 346899999999998887665 8999
Q ss_pred EEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-----cCCeEEEEeCCCCeEEEeccCCCCeeEEEE
Q 009059 458 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-----CYETLELWNMTENKTLTLSAHDKLVSSLAA 525 (545)
Q Consensus 458 wd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-----~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~ 525 (545)
||..+++... ...+.........++++|++..|+++. .++.|.+||.. ++.+....-......++|
T Consensus 249 ~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 249 MPVEADRVPV-RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp EETTCSSCCS-SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred EECCCCceee-eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence 9998764311 011111246688999999655566665 56799999998 766632223334455555
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.70 E-value=7.1e-14 Score=148.67 Aligned_cols=265 Identities=11% Similarity=0.059 Sum_probs=194.5
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCCeeeeEeccCccc
Q 009059 273 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE--NPDYSLRTFTGHSTT 350 (545)
Q Consensus 273 pdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~--~~~~~~~~~~~h~~~ 350 (545)
+.+.++++...++.|.++|..+++.+..+... ..+..+.|+||++++++++.|+.|.+||+. +.+. +..+... ..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-v~~i~~G-~~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-VAEIKIG-SE 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-EEEEECC-SE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-eEEEecC-CC
Confidence 44556777778899999999999999888643 357799999999999999999999999995 5554 4555433 34
Q ss_pred EEEEEEe----CCCCcEEEEEcCCCcEEEEECCCCceeeEEecc------------CCeeEEEEeCCCCEEEEEEC-CCe
Q 009059 351 VMSLDFH----PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQPRLGRILAAAI-ENY 413 (545)
Q Consensus 351 V~~l~~~----p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~------------~~v~~l~~sp~~~~l~~~~~-dg~ 413 (545)
...++|+ |+|+.++++...++.|.++|..+.+.+..+... ..+..+.+++++..+++... .|.
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 6799999 699999888888899999999999988877532 14677888888776665554 689
Q ss_pred EEEEECCCCEE--EEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEee-----CCCceEEEEE
Q 009059 414 ISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-----TGNKFHSCVF 484 (545)
Q Consensus 414 I~i~d~~~~~~--~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~-----~~~~v~~~~~ 484 (545)
|.++|....+. +..+. .......+.|+|+|++|+++. ++.|.++|+.++ +.+..+.. |.+.-.. .+
T Consensus 322 v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~---kl~~~i~vgg~~Phpg~g~~-~~ 396 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGAN-FV 396 (567)
T ss_dssp EEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEE-EE
T ss_pred EEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCC---cEEEEEeccCcCCCCcccee-eE
Confidence 99999987532 22332 445678999999999988776 779999999987 44444433 2211212 26
Q ss_pred cCCCCEEEEEE--cCCeEEEEeCCC-------CeEE-EeccCCCCeeEEEEeCCCCEEEEEeC-------CCcEEEcC
Q 009059 485 HPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIWK 545 (545)
Q Consensus 485 sp~~~~l~~~~--~dg~I~iwd~~~-------~~~~-~~~~h~~~V~~l~~spd~~~las~s~-------Dg~I~iWd 545 (545)
+|++..+++.+ .++.|.++|... .+.+ .+......-..+..+|++++|.+... ...|.|+|
T Consensus 397 ~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 397 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 88866565554 457999999987 5565 44433333355788999998887663 34777764
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.69 E-value=7.8e-16 Score=169.27 Aligned_cols=247 Identities=10% Similarity=0.006 Sum_probs=170.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEE-----eCCCcEEEEEcCCCeEEEEeccCCccE--EEEEEcCCCCEEEEEeCCCe-----
Q 009059 261 ASTSKVESCHFSPDGKLLATG-----GHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRT----- 328 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg-----~~dg~I~lwd~~~~~~~~~l~~h~~~V--~~l~~sp~~~~l~t~s~dg~----- 328 (545)
+|...+.+++|||||++||.+ +.+..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 455568899999999999843 345689999999988651 1122222 67999999999999998776
Q ss_pred --------EEEEECCCCCe---eeeEeccCcccEEEEEEeCCCCcEEEEEcCC-C--cEEEEECCCCceeeEEeccCCee
Q 009059 329 --------VRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGAT 394 (545)
Q Consensus 329 --------I~vwd~~~~~~---~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d-g--~I~lwd~~~~~~~~~~~~~~~v~ 394 (545)
|++|++.++.. .+.....|...+..+.|+|+|+.++++...+ + .|++|+..+++..........+.
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 275 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY 275 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence 99999987652 2223334556789999999998887665533 2 67788776666555555445566
Q ss_pred EEEEeCCCCEEEEEEC----CCeEEEEECCCCEE---EEEecCC-CCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC
Q 009059 395 QMRFQPRLGRILAAAI----ENYISILDVETQVC---RLKLQGH-KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~~----dg~I~i~d~~~~~~---~~~~~~h-~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~ 465 (545)
...+ ++++ +++.+. ++.|.+||+.++.. ...+..+ ...+..++|+ ++.++++.. |+..+||.+...
T Consensus 276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~-- 350 (695)
T 2bkl_A 276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK-- 350 (695)
T ss_dssp EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT--
T ss_pred EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC--
Confidence 6666 5656 655554 57899999987642 3333333 4567888888 666777776 887777765421
Q ss_pred cceEEEEeeC-CCceEEEEEcCCCCEEEEEEcC----CeEEEEeCCCCeEEEec
Q 009059 466 GECIHELSCT-GNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTLS 514 (545)
Q Consensus 466 ~~~i~~~~~~-~~~v~~~~~sp~~~~l~~~~~d----g~I~iwd~~~~~~~~~~ 514 (545)
......+..+ ...+..+.++|++..++....+ +.|++||+.+++...+.
T Consensus 351 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 351 GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 1344445444 5567778899999877755443 58999999988765443
No 189
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.68 E-value=1.3e-15 Score=154.85 Aligned_cols=259 Identities=10% Similarity=0.045 Sum_probs=173.0
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEE----------
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD---------- 310 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~---------- 310 (545)
.+.+|+...+.. .....++...+.++.|+|||++|+.++.++.|++||+.+++.......+......
T Consensus 61 ~l~~~d~~~~~~---~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 137 (396)
T 3c5m_A 61 NYYLLNLETQQA---VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCT 137 (396)
T ss_dssp EEEEEETTTTEE---EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSS
T ss_pred eEEEEECCCCcE---EEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCC
Confidence 345566666542 1222233322334889999999999999999999999988776665545443333
Q ss_pred ---------EEEcCCCCEEEEE-----eCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeC-CCCcEEEEEcCC-----
Q 009059 311 ---------VRFSPSLSRLATS-----SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNN----- 370 (545)
Q Consensus 311 ---------l~~sp~~~~l~t~-----s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~ll~s~s~d----- 370 (545)
+.|+|+++.++.+ ..+..|.+||+.++.. ..+..+...+..+.|+| ++..+++.....
T Consensus 138 ~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~ 215 (396)
T 3c5m_A 138 KLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL--EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVD 215 (396)
T ss_dssp EEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE--EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCS
T ss_pred ccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE--EeeccCCcccccceECCCCCCEEEEEecCCCCCCC
Confidence 3567777776654 3567899999987653 33335667899999999 666566554322
Q ss_pred CcEEEEECCCCceeeEEecc--CCeeEEEEeCCCCEEEEEECC-----CeEEEEECCCCEEEEEecCCCCCEEEEEEcC-
Q 009059 371 SEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQGHKNQVHSVCWNT- 442 (545)
Q Consensus 371 g~I~lwd~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~~~~~d-----g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp- 442 (545)
..|++||+..++........ ..+..+.|+|++..|++++.+ +.|++||+.+++....... . ... +.|+|
T Consensus 216 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~-~~~-~~~s~~ 292 (396)
T 3c5m_A 216 ARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P-PCS-HLMSNF 292 (396)
T ss_dssp CCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C-SEE-EEEECS
T ss_pred ceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C-CCC-CCccCC
Confidence 46999998766543333321 236778999999988777653 4499999998865443221 1 233 89999
Q ss_pred CCCEEEEEe-----------------CCcEEEEEcCCCCCcceEEEEeeCCC-----------ceEEEEEcCCCCEEEEE
Q 009059 443 SGEYLASVS-----------------DELVRVWSIGSGSKGECIHELSCTGN-----------KFHSCVFHPTFPSLLVI 494 (545)
Q Consensus 443 ~g~~l~s~s-----------------dg~I~vwd~~~~~~~~~i~~~~~~~~-----------~v~~~~~sp~~~~l~~~ 494 (545)
+|++|+++. +..|++||+.++.. . .+..+.. .+..+.|+|+++.|+.+
T Consensus 293 dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~---~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 368 (396)
T 3c5m_A 293 DGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-Q---KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFT 368 (396)
T ss_dssp SSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-C---EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred CCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-E---EccCCCCccccccccccCCCCCceEccCCCeEEEE
Confidence 999888753 35899999987642 2 2333333 25667899999988887
Q ss_pred EcC-C--eEEEEeCCCCeEE
Q 009059 495 GCY-E--TLELWNMTENKTL 511 (545)
Q Consensus 495 ~~d-g--~I~iwd~~~~~~~ 511 (545)
+.. + .|+++|+.++...
T Consensus 369 s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 369 SDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp ECTTSSCEEEEEECCTTCC-
T ss_pred ecCCCCceEEEEEEcccccc
Confidence 764 3 5667777776655
No 190
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.68 E-value=5.2e-13 Score=129.92 Aligned_cols=274 Identities=8% Similarity=-0.031 Sum_probs=191.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEE-EeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 009059 260 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~-~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
......+.++++.++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|.+||.. +.
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 3445678999999999988877778999999987 55443 233344679999999999887777668899999988 55
Q ss_pred eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE-e-ccCCeeEEEEeCCCCEEEEEECCCeEEE
Q 009059 339 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-K-CQSGATQMRFQPRLGRILAAAIENYISI 416 (545)
Q Consensus 339 ~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~-~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i 416 (545)
............+.++++.+++. ++++...++.|..||.. ++..... . ....+..+++.+++..+++...++.|.+
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred eEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 42222333446789999998864 55566667889999987 5544221 1 2345889999999775444445789999
Q ss_pred EECCCCEEEE-EecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEE
Q 009059 417 LDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 494 (545)
Q Consensus 417 ~d~~~~~~~~-~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~ 494 (545)
||. +++... ....+...+..++++++|.++++.. .+.|.+||. ++. ............+..+++++++..+++.
T Consensus 172 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 172 ITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE--ISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred ECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc--EEEEECCCCCCCceEEEECCCCCEEEec
Confidence 998 444333 2333456789999999998777766 668999998 332 1112223345678999999999844444
Q ss_pred EcCCeEEEEeCCCCeEEE--eccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 495 GCYETLELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 495 ~~dg~I~iwd~~~~~~~~--~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
..++.|..||. +++... +......+.++++.++|+++++.. . .|..+
T Consensus 248 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 248 WGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp TTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred cCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 45689999998 454443 333456789999999998666654 4 45443
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.67 E-value=2.1e-14 Score=138.03 Aligned_cols=238 Identities=8% Similarity=-0.037 Sum_probs=167.7
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 265 KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 265 ~V~~l~~spdg~~la-tg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
...+++++++|++++ +...++.|.+|+..+.........+...+.++++.++++++++.. ++.|.+||...... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~--~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ--TV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC--EE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE--ee
Confidence 578899999999777 446788999999766544332233445688999999998666655 88999999876442 22
Q ss_pred ec-cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE-eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC
Q 009059 344 FT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVET 421 (545)
Q Consensus 344 ~~-~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~ 421 (545)
+. .....+.++++.+++. ++++...++.|.+|+..+....... .....+..+++++++..+++...++.|.+||...
T Consensus 102 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 22 2335789999999875 6656667889999986654433221 1223578899999877555555678999999987
Q ss_pred CEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeE
Q 009059 422 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 500 (545)
Q Consensus 422 ~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I 500 (545)
.........+...+.+++++++|.++++.. ++.|.+|+..... .......+...+..++++++++.+++...++.|
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC---CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc---ceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence 765543333446789999999997777766 7799999986542 122112233568999999999877777778899
Q ss_pred EEEeCCCCe
Q 009059 501 ELWNMTENK 509 (545)
Q Consensus 501 ~iwd~~~~~ 509 (545)
++|++...+
T Consensus 258 ~~~~~~~~~ 266 (270)
T 1rwi_B 258 VKLTSLEHH 266 (270)
T ss_dssp EEECCCGGG
T ss_pred EEEcCCCcc
Confidence 999987654
No 192
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.67 E-value=4.8e-13 Score=135.29 Aligned_cols=266 Identities=9% Similarity=0.005 Sum_probs=183.3
Q ss_pred EcCCCCEEEEEeC--CC---cEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEe----------CCCeEEEEECC
Q 009059 271 FSPDGKLLATGGH--DK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTE 335 (545)
Q Consensus 271 ~spdg~~latg~~--dg---~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s----------~dg~I~vwd~~ 335 (545)
..|+++++++... .. .|.+||..+++.+..+.....+ .++|+||+++|+++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 3467777666653 22 8899999999998888755444 899999999999886 36789999998
Q ss_pred CCCeeeeEeccC-------cccEEEEEEeCCCCcEEEEEcC-CCcEEEEECCCCceeeE-EeccCCeeEEEEeCCCC-EE
Q 009059 336 NPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRLG-RI 405 (545)
Q Consensus 336 ~~~~~~~~~~~h-------~~~V~~l~~~p~~~~ll~s~s~-dg~I~lwd~~~~~~~~~-~~~~~~v~~l~~sp~~~-~l 405 (545)
+.+. +..+.-. ......+.|+|+++.++++... ++.|.++| .+++.+.. +..... +.+.+.+. .+
T Consensus 106 t~~~-~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~ 180 (373)
T 2mad_H 106 TFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTF 180 (373)
T ss_pred CCcE-EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceE
Confidence 7654 3333211 1235689999999888866544 57899999 99988877 654332 45556543 45
Q ss_pred EEEECCCeEEEEECCCCEEEEEec-----CCCCCE-EEEEEcCCCCEE-EEEeCCcEEEEEcCCCCCcceEEEEee----
Q 009059 406 LAAAIENYISILDVETQVCRLKLQ-----GHKNQV-HSVCWNTSGEYL-ASVSDELVRVWSIGSGSKGECIHELSC---- 474 (545)
Q Consensus 406 ~~~~~dg~I~i~d~~~~~~~~~~~-----~h~~~I-~~l~~sp~g~~l-~s~sdg~I~vwd~~~~~~~~~i~~~~~---- 474 (545)
++.+.||.+.++|. +++...... ....++ ....+.+++..+ +...++.+.+.|+..... ..+..+..
T Consensus 181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~-~v~~~~~~~~~~ 258 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKAPIDALSGG 258 (373)
T ss_pred EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc-eEeeeeeecCCc
Confidence 56667999999999 776653321 111221 234556665443 334477999999875421 22222221
Q ss_pred ------CCCceEEEEEcCCCCEEEEEEc----------CCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCC-EEEEEe-
Q 009059 475 ------TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS- 536 (545)
Q Consensus 475 ------~~~~v~~~~~sp~~~~l~~~~~----------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~-~las~s- 536 (545)
.......+.++++++.++++.. .+.|.++|+.+++.+..........+++|+|||+ +++++.
T Consensus 259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~ 338 (373)
T 2mad_H 259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA 338 (373)
T ss_pred ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcC
Confidence 1223445789999998888764 3579999999999874334455689999999999 777777
Q ss_pred CCCcEEEcC
Q 009059 537 HDKCVKIWK 545 (545)
Q Consensus 537 ~Dg~I~iWd 545 (545)
.++.|.+||
T Consensus 339 ~~~~V~ViD 347 (373)
T 2mad_H 339 GTEVLHIYD 347 (373)
T ss_pred CCCeEEEEE
Confidence 489999986
No 193
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.66 E-value=2.6e-14 Score=143.21 Aligned_cols=271 Identities=10% Similarity=0.071 Sum_probs=191.2
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEe----------CCCeEEEEE
Q 009059 269 CHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWD 333 (545)
Q Consensus 269 l~~spdg~~latg~~-----dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s----------~dg~I~vwd 333 (545)
....|+++.+++... ++.|.++|..+++.+..+.....+ . ++++||+++|+++. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 345688988888765 679999999999999988765555 4 99999999988875 367899999
Q ss_pred CCCCCeeeeEec-cC------cccEEEEEEeCCCCcEEEEEcC-CCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEE
Q 009059 334 TENPDYSLRTFT-GH------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 405 (545)
Q Consensus 334 ~~~~~~~~~~~~-~h------~~~V~~l~~~p~~~~ll~s~s~-dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l 405 (545)
..+.+. +..+. +. ......+.|+|+|+.++++... ++.|.++|+.+++.+.++...+. ...+......+
T Consensus 116 ~~t~~v-~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~ 192 (386)
T 3sjl_D 116 PVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTF 192 (386)
T ss_dssp TTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEE
T ss_pred CCCCeE-EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCcee
Confidence 998775 44442 11 1245678999999888866543 78999999999999998875442 22333344567
Q ss_pred EEEECCCeEEEEECCC-CEEEEEecCC----CCCEE-EEEEc-CCCCEEEEEeCCcEEEEEcCCCCCcceEEEEe-----
Q 009059 406 LAAAIENYISILDVET-QVCRLKLQGH----KNQVH-SVCWN-TSGEYLASVSDELVRVWSIGSGSKGECIHELS----- 473 (545)
Q Consensus 406 ~~~~~dg~I~i~d~~~-~~~~~~~~~h----~~~I~-~l~~s-p~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~----- 473 (545)
++.+.||.+.++++.+ ++.......+ ...+. ...|. ++|++++...++.|++.|+.+... ..+..+.
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~-~v~~~~~~~~~~ 271 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTEA 271 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCHH
T ss_pred EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc-eeecceeccccc
Confidence 7888899999999986 5543222111 12222 23554 678777766688999999976531 1222221
Q ss_pred -----eCCCceEEEEEcCCCCEEEEEEc----------CCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCC-EEEEEe-
Q 009059 474 -----CTGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS- 536 (545)
Q Consensus 474 -----~~~~~v~~~~~sp~~~~l~~~~~----------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~-~las~s- 536 (545)
........++++++++.+++... .+.|.++|+.+++.+....-...++.|++++|++ +|+++.
T Consensus 272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~ 351 (386)
T 3sjl_D 272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST 351 (386)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET
T ss_pred cccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC
Confidence 01122335777999999888754 2479999999999984433445789999999997 666654
Q ss_pred CCCcEEEcC
Q 009059 537 HDKCVKIWK 545 (545)
Q Consensus 537 ~Dg~I~iWd 545 (545)
.++.|.++|
T Consensus 352 ~~~~VsViD 360 (386)
T 3sjl_D 352 GDKTLYIHD 360 (386)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEEE
Confidence 588998876
No 194
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.66 E-value=3.3e-14 Score=156.62 Aligned_cols=268 Identities=8% Similarity=-0.012 Sum_probs=181.4
Q ss_pred CCCCEEEEEeCCC-----cEEEEEcCCCeEEEEe------ccCCccEEEEEEcCCCCEEEEEeCCC-----eEEEEECCC
Q 009059 273 PDGKLLATGGHDK-----KAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTEN 336 (545)
Q Consensus 273 pdg~~latg~~dg-----~I~lwd~~~~~~~~~l------~~h~~~V~~l~~sp~~~~l~t~s~dg-----~I~vwd~~~ 336 (545)
|+|++++....++ .|.+.+...++....+ .+|...+..++|+|||++||.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 7888877654332 3444444444433222 23545789999999999998776543 899999998
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCc----------------EEEEECCCCcee--eEEec---cCCeeE
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE----------------IRYWSINNGSCA--GVFKC---QSGATQ 395 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~----------------I~lwd~~~~~~~--~~~~~---~~~v~~ 395 (545)
++.....+. ...+..++|+||++.++++.. ++. |++|++.++... ..+.. ...+..
T Consensus 161 g~~~~~~~~--~~~~~~~~wspDg~~l~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 161 AKELPDVLE--RVKFSCMAWTHDGKGMFYNAY-PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp TEEEEEEEE--EECSCCEEECTTSSEEEEEEC-CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCccccc--CcccceEEEEeCCCEEEEEEE-CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 765222222 223678999999988776554 433 999999887632 22222 223678
Q ss_pred EEEeCCCCEEEEEEC-----CCeEEEEECCC------CE-EEEEecCCCCCEEEEEEcCCCCEEEEEe-CC----cEEEE
Q 009059 396 MRFQPRLGRILAAAI-----ENYISILDVET------QV-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVW 458 (545)
Q Consensus 396 l~~sp~~~~l~~~~~-----dg~I~i~d~~~------~~-~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg----~I~vw 458 (545)
+.|+|++++|+.... +..|++||+.+ +. ....+..+...+.. .|+++|..|+..+ ++ .|.+|
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence 999999999888775 56899999986 42 34455556665554 4888998777665 22 69999
Q ss_pred EcCCCCCcceEEEEeeCCC--ceEEEEEcCCCCEEEEEEcCC--eEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEE
Q 009059 459 SIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA 533 (545)
Q Consensus 459 d~~~~~~~~~i~~~~~~~~--~v~~~~~sp~~~~l~~~~~dg--~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~la 533 (545)
|+.++... ....+..+.. .+..+.|++++..+++...++ .|++||+.+++.+ .+..+.+.|..++++|++..|+
T Consensus 317 d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 317 DFTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp ETTSCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred eCCCCCcc-cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence 99876321 2233333433 678889997777777777787 5778888667654 6666778899999999987655
Q ss_pred EE-e---CCCcEEEcC
Q 009059 534 SA-S---HDKCVKIWK 545 (545)
Q Consensus 534 s~-s---~Dg~I~iWd 545 (545)
.. + ..+.|.+||
T Consensus 396 ~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEECSSCCCEEEEEE
T ss_pred EEEeCCCCCCEEEEEE
Confidence 33 3 246777774
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.65 E-value=3.3e-14 Score=136.57 Aligned_cols=233 Identities=7% Similarity=-0.085 Sum_probs=163.9
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee
Q 009059 307 WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 385 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~-t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~ 385 (545)
...++++++++++++ +...++.|.+||..+... ......+...+.++++.+++. ++++.. ++.|.+||........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-ceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEee
Confidence 678999999998776 446788999999865442 111123335688999999876 555555 8899999987654332
Q ss_pred EE-eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q 009059 386 VF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 463 (545)
Q Consensus 386 ~~-~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~ 463 (545)
.. .....+..+++.+++..+++...++.|.+|+..+.............+.+++++++|+++++.. ++.|.+||....
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 21 1224688999999877555555688999998766544332223334678999999999777766 779999998765
Q ss_pred CCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEec-cCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 009059 464 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVK 542 (545)
Q Consensus 464 ~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~-~h~~~V~~l~~spd~~~las~s~Dg~I~ 542 (545)
. ...........+..+++++++..+++...++.|.+||..+....... .+...+.+++++++|+++++...++.|+
T Consensus 182 ~---~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~ 258 (270)
T 1rwi_B 182 N---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV 258 (270)
T ss_dssp C---EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred c---eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence 2 22222223367889999999965555555779999999876655433 3346789999999999888888999999
Q ss_pred EcC
Q 009059 543 IWK 545 (545)
Q Consensus 543 iWd 545 (545)
+|+
T Consensus 259 ~~~ 261 (270)
T 1rwi_B 259 KLT 261 (270)
T ss_dssp EEC
T ss_pred EEc
Confidence 985
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.64 E-value=1.5e-13 Score=133.12 Aligned_cols=240 Identities=10% Similarity=0.054 Sum_probs=177.5
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCC-ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccC-cccE
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTV 351 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~-~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h-~~~V 351 (545)
.+++|++++.++.|.+||.++++.+..+..+. ..+.++.+.|+|++|+ +.++.|..||. +++. +..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~-~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRE-LWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCE-EEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCE-EEEEcCCCCccc
Confidence 45789999999999999999999999998776 5789999999999888 45788999999 6665 6666654 3578
Q ss_pred EEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC-------CeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE
Q 009059 352 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-------GATQMRFQPRLGRILAAAIENYISILDVETQVC 424 (545)
Q Consensus 352 ~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~-------~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~ 424 (545)
.++.+.+++..+++.+..++.|..+|. +++.+..+.... ....+.+.++++++++...++.|..||.+ ++.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 899999998766644433777888886 677777765332 24456788999999888889999999998 988
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC------CceEEEEEcCCCCEEEEEEcC
Q 009059 425 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG------NKFHSCVFHPTFPSLLVIGCY 497 (545)
Q Consensus 425 ~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~------~~v~~~~~sp~~~~l~~~~~d 497 (545)
+.++... ..+.++.+.++|++++++. ++.|..+|..++ +.+.++.... ..+..+...+++..+++....
T Consensus 158 ~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 158 LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN---RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC---CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC---cEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence 8888754 4566788889999999888 568999999877 5566654322 237888889999866665311
Q ss_pred --------CeEEEEeC-CCCeEE-EeccCC--CCeeEE
Q 009059 498 --------ETLELWNM-TENKTL-TLSAHD--KLVSSL 523 (545)
Q Consensus 498 --------g~I~iwd~-~~~~~~-~~~~h~--~~V~~l 523 (545)
+..+++++ .+++.+ .+..+. +.|.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~ 271 (276)
T 3no2_A 234 HDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTI 271 (276)
T ss_dssp TCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred ccccccccCCceEEEECCCCCEEEEecCcccccceeee
Confidence 23345555 355555 444322 345444
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.62 E-value=5.4e-12 Score=127.51 Aligned_cols=257 Identities=12% Similarity=0.070 Sum_probs=180.0
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCeEEEEeccC------
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH------ 304 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~----------~dg~I~lwd~~~~~~~~~l~~h------ 304 (545)
.+.++|..++... ..+.....+ .++|+|||++|+++. .++.|.+||..+++.+..+...
T Consensus 48 ~v~v~D~~t~~~~---~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~ 122 (373)
T 2mad_H 48 QQWVLDAGSGSIL---GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD 122 (373)
T ss_pred EEEEEECCCCeEE---EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc
Confidence 4566776666543 344443344 899999999998886 3678999999998888766432
Q ss_pred -CccEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCeeeeE-eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 305 -TQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 305 -~~~V~~l~~sp~~~~l~t~s~--dg~I~vwd~~~~~~~~~~-~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
......++|+|||++|+++.. ++.|.++| .+++. +.. +. ... ++.+.|++...+++.+.||.+.++|. +
T Consensus 123 ~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~-~~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~ 195 (373)
T 2mad_H 123 VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS-DDQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-A 195 (373)
T ss_pred cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE-EeEEcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-C
Confidence 123458999999999999874 47899999 87764 444 33 222 25566777777777788999999999 8
Q ss_pred CceeeEEe-----c-cCC-eeEEEEeCCCCEEEEEECCCeEEEEECCCCE--EEEEecC----------CCCCEEEEEEc
Q 009059 381 GSCAGVFK-----C-QSG-ATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG----------HKNQVHSVCWN 441 (545)
Q Consensus 381 ~~~~~~~~-----~-~~~-v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~--~~~~~~~----------h~~~I~~l~~s 441 (545)
++...... . ... .....+.++++.++..+.++.+.++|+.... .+..+.. .......+.++
T Consensus 196 g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s 275 (373)
T 2mad_H 196 GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYL 275 (373)
T ss_pred CcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEEC
Confidence 77664322 1 111 1234567776776666688999999997652 2222211 11234457889
Q ss_pred CCCCEEEEEe-----------CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCC-EEEEEE-cCCeEEEEeCCCC
Q 009059 442 TSGEYLASVS-----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTEN 508 (545)
Q Consensus 442 p~g~~l~s~s-----------dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~-~l~~~~-~dg~I~iwd~~~~ 508 (545)
|+++.+++.. .+.|.++|+.+. +.+..+. .......+.|+|+++ .++++. .++.|.+||+.++
T Consensus 276 ~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 276 KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred CCCCEEEEEeccCCcccccCCCCeEEEEECCCC---EEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 9988777754 247999999877 5666664 344689999999999 677766 4789999999999
Q ss_pred eEEEe
Q 009059 509 KTLTL 513 (545)
Q Consensus 509 ~~~~~ 513 (545)
+.+..
T Consensus 352 ~vv~~ 356 (373)
T 2mad_H 352 DQDQS 356 (373)
T ss_pred CEEee
Confidence 98843
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.62 E-value=3.1e-14 Score=156.53 Aligned_cols=268 Identities=12% Similarity=-0.008 Sum_probs=173.1
Q ss_pred cCCCCEEEEEeCCC---c--EEEEEcCCCeEEEEe------ccCCccEEEEEEcCCCCEEEEE-----eCCCeEEEEECC
Q 009059 272 SPDGKLLATGGHDK---K--AVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATS-----SADRTVRVWDTE 335 (545)
Q Consensus 272 spdg~~latg~~dg---~--I~lwd~~~~~~~~~l------~~h~~~V~~l~~sp~~~~l~t~-----s~dg~I~vwd~~ 335 (545)
+|+|++++....++ . |.+.+...++....+ .+|...+..++|+|||++||.+ +.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 37888888776543 2 444454454433333 2466679999999999999843 345689999999
Q ss_pred CCCee-eeEeccCcccEEEEEEeCCCCcEEEEEcCCCc-------------EEEEECCCCcee--eEEec---cCCeeEE
Q 009059 336 NPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-------------IRYWSINNGSCA--GVFKC---QSGATQM 396 (545)
Q Consensus 336 ~~~~~-~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~-------------I~lwd~~~~~~~--~~~~~---~~~v~~l 396 (545)
++... ...+... ....++|+|+++.++++. .|.. |++|++.++... ..+.. ...+..+
T Consensus 156 tg~~~~~~~~~~~--~~~~~~wspDg~~l~~~~-~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~ 232 (695)
T 2bkl_A 156 SGEWSKVDVIEGG--KYATPKWTPDSKGFYYEW-LPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS 232 (695)
T ss_dssp TCCBCSSCCBSCC--TTCCCEECTTSSEEEEEE-CCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred CCCCcCCcccCcc--cccceEEecCCCEEEEEE-ecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence 87642 1122211 126899999998777554 4444 999999987632 22222 2357899
Q ss_pred EEeCCCCEEEEEECCC----eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe----CCcEEEEEcCCCCCcce
Q 009059 397 RFQPRLGRILAAAIEN----YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGEC 468 (545)
Q Consensus 397 ~~sp~~~~l~~~~~dg----~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s----dg~I~vwd~~~~~~~~~ 468 (545)
.|+|+|.+|+++..++ .|++++..++... .+..+...+....| ++|.+++... ++.|.+||+.++.....
T Consensus 233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 310 (695)
T 2bkl_A 233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASW 310 (695)
T ss_dssp EECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred EECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence 9999999998887765 7888877665433 33345556666667 5566444443 25899999877632112
Q ss_pred EEEEeeC-CCceEEEEEcCCCCEEEEEEcCCeEEEE--eCCCCeEEEeccC-CCCeeEEEEeCCCCEEEEEe----CCCc
Q 009059 469 IHELSCT-GNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTLSAH-DKLVSSLAASTVNGMVASAS----HDKC 540 (545)
Q Consensus 469 i~~~~~~-~~~v~~~~~sp~~~~l~~~~~dg~I~iw--d~~~~~~~~~~~h-~~~V~~l~~spd~~~las~s----~Dg~ 540 (545)
...+..+ ...+..+.|+ ++..+++...++..+|| ++.......+..+ ...|..++++|+++.|+... ..+.
T Consensus 311 ~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 389 (695)
T 2bkl_A 311 KEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ 389 (695)
T ss_dssp EEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred eEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 2223322 4567888888 66677777888866665 5444433355444 66788899999998666332 3467
Q ss_pred EEEcC
Q 009059 541 VKIWK 545 (545)
Q Consensus 541 I~iWd 545 (545)
|++||
T Consensus 390 v~~~d 394 (695)
T 2bkl_A 390 IYKTS 394 (695)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88875
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.61 E-value=8e-13 Score=129.81 Aligned_cols=240 Identities=10% Similarity=0.097 Sum_probs=169.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEE-------EeCCCcEEEEEcCCCeEEEEec----cCCccEEEEEEcCC-CCEEEEEeCCC
Q 009059 260 PASTSKVESCHFSPDGKLLAT-------GGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPS-LSRLATSSADR 327 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg~~lat-------g~~dg~I~lwd~~~~~~~~~l~----~h~~~V~~l~~sp~-~~~l~t~s~dg 327 (545)
...-....+++|+++|.++++ +..++.|.+||..+++...... ++...+.+++++++ ++++++. ..+
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCC
Confidence 334456789999999988887 5678899999988777653322 25567999999999 6655544 445
Q ss_pred eEEEEECCCCCeeeeEe-cc-----CcccEEEEEEeCCCCcEEEEEcCC---------------CcEEEEECCCCceeeE
Q 009059 328 TVRVWDTENPDYSLRTF-TG-----HSTTVMSLDFHPSKEDLLCSCDNN---------------SEIRYWSINNGSCAGV 386 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~-~~-----h~~~V~~l~~~p~~~~ll~s~s~d---------------g~I~lwd~~~~~~~~~ 386 (545)
.|.+||.. ++. ..+ .. ....+.++++.+++. ++++...+ +.|..||.. ++....
T Consensus 93 ~l~~~d~~-g~~--~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 93 GLLVVQTD-GTF--EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp EEEEEETT-SCE--EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred CEEEEeCC-CCE--EEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence 79999988 543 222 11 124588999999975 44455444 568888876 555444
Q ss_pred EeccCCeeEEEEe----CCCCEEEEEE-CCCeEEEEECC-CCE-----EEEEecCCC-CCEEEEEEcCCCCEEEEEe-CC
Q 009059 387 FKCQSGATQMRFQ----PRLGRILAAA-IENYISILDVE-TQV-----CRLKLQGHK-NQVHSVCWNTSGEYLASVS-DE 453 (545)
Q Consensus 387 ~~~~~~v~~l~~s----p~~~~l~~~~-~dg~I~i~d~~-~~~-----~~~~~~~h~-~~I~~l~~sp~g~~l~s~s-dg 453 (545)
.........++++ ++++.++++. .++.|.+||+. ++. ....+..+. ..+..++++++|+++++.. ++
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~ 247 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence 4444567889999 9977776665 57899999976 443 223344443 5688999999999888876 78
Q ss_pred cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc-CCeEEEEeCCCC
Q 009059 454 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 508 (545)
Q Consensus 454 ~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~ 508 (545)
.|.+||..++. .+..+..+...+.+++|+++++.|++++. ++.|..|++...
T Consensus 248 ~i~~~d~~~g~---~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 248 HIEVFGPDGGQ---PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEECTTCBS---CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEEEcCCCCc---EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 99999987553 33344455578999999999996766654 568999998653
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.60 E-value=1.1e-13 Score=153.08 Aligned_cols=245 Identities=12% Similarity=0.038 Sum_probs=165.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCe--------
Q 009059 262 STSKVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------- 328 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~d-----g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~-------- 328 (545)
|...+..++|||||++||.+..+ ..|++||+.+++.+... .+...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 33457889999999999987654 46999999998876431 12222357899999 99998887654
Q ss_pred ------EEEEECCCCCee-eeEe--ccCcccEEEEEEeCCCCcEEEEEcC----CCcEEEEECCCC--ceeeEEe-ccCC
Q 009059 329 ------VRVWDTENPDYS-LRTF--TGHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINNG--SCAGVFK-CQSG 392 (545)
Q Consensus 329 ------I~vwd~~~~~~~-~~~~--~~h~~~V~~l~~~p~~~~ll~s~s~----dg~I~lwd~~~~--~~~~~~~-~~~~ 392 (545)
|++|++.++... ...+ ..+...+..+.|+|+|+.++++... ...|++||+.++ ++...+. ....
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 889999766521 1222 2333458899999999888766642 348999999877 4133333 3333
Q ss_pred eeEEEEeCCCCEEEEEECC----CeEEEEECCCC--EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcC-CCC
Q 009059 393 ATQMRFQPRLGRILAAAIE----NYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGS 464 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~d----g~I~i~d~~~~--~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~-~~~ 464 (545)
.... +.++++.|+..+.+ +.|.+||+.++ .....+..+...+..+.|+ ++.++++.. |+..+||.+. .+
T Consensus 319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g- 395 (741)
T 1yr2_A 319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG- 395 (741)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS-
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-
Confidence 4444 45888998888764 45999999884 4444445455566778887 556666666 8866666554 22
Q ss_pred CcceEEEEee-CCCceEEEEEcCCCCEEEEEEc----CCeEEEEeCCCCeEEEe
Q 009059 465 KGECIHELSC-TGNKFHSCVFHPTFPSLLVIGC----YETLELWNMTENKTLTL 513 (545)
Q Consensus 465 ~~~~i~~~~~-~~~~v~~~~~sp~~~~l~~~~~----dg~I~iwd~~~~~~~~~ 513 (545)
.....+.. ....+..+.++|++..|+.... .++|++||+.+++...+
T Consensus 396 --~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 396 --KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp --CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred --CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 34444543 3567888999999886664433 25899999998875544
No 201
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.59 E-value=5.6e-12 Score=122.49 Aligned_cols=236 Identities=8% Similarity=-0.006 Sum_probs=168.5
Q ss_pred eccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 301 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 301 l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
+..+...+.++++.++++++++...++.|.+||.. +.........+...+.++++.+++. ++++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE-VWFTENAANKIGRITKK- 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC-EEEeCCCCCeEEEECCC-
Confidence 34455779999999999987777668899999988 5432222233456799999999875 55566667889999986
Q ss_pred CceeeEEe---ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEE-EEecCCCCCEEEEEEcCCCCEEEEEe-CCcE
Q 009059 381 GSCAGVFK---CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVS-DELV 455 (545)
Q Consensus 381 ~~~~~~~~---~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~-~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I 455 (545)
++. ..+. ....+..+++.+++..+++...++.|.+||. +++.. .....+...+..++++++|+++++.. ++.|
T Consensus 87 g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 164 (299)
T 2z2n_A 87 GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI 164 (299)
T ss_dssp SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence 332 3333 2346889999998766665556889999999 54433 23333556799999999998888776 6799
Q ss_pred EEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEE--eccCCCCeeEEEEeCCCCEEE
Q 009059 456 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVA 533 (545)
Q Consensus 456 ~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~--~~~h~~~V~~l~~spd~~~la 533 (545)
.+||. ++.. ...........+..+++++++..+++...++.|.+||. +++... ...+...+.+++++++|++++
T Consensus 165 ~~~~~-~g~~--~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v 240 (299)
T 2z2n_A 165 GRITE-SGDI--TEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWF 240 (299)
T ss_dssp EEECT-TCCE--EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred EEEcC-CCcE--EEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEE
Confidence 99998 4421 11112334456889999999985555555779999999 666543 334557799999999998777
Q ss_pred EEeCCCcEEEcC
Q 009059 534 SASHDKCVKIWK 545 (545)
Q Consensus 534 s~s~Dg~I~iWd 545 (545)
+...++.|.+||
T Consensus 241 ~~~~~~~i~~~d 252 (299)
T 2z2n_A 241 TEWGANKIGRLT 252 (299)
T ss_dssp EETTTTEEEEEE
T ss_pred eccCCceEEEEC
Confidence 765677888774
No 202
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.58 E-value=8.7e-13 Score=132.15 Aligned_cols=275 Identities=11% Similarity=0.097 Sum_probs=185.0
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCeEEEEeccCC----
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHT---- 305 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~----------~dg~I~lwd~~~~~~~~~l~~h~---- 305 (545)
..+.+.|..++.....+.. -..+ . ++++|||++|+++. .++.|.+||..+++.+..+.-..
T Consensus 59 ~~V~ViD~~t~~v~~~I~v---G~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~ 133 (386)
T 3sjl_D 59 TQQFVIDGEAGRVIGMIDG---GFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 133 (386)
T ss_dssp EEEEEEETTTTEEEEEEEE---CSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred CEEEEEECCCCeEEEEEEC---CCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccc
Confidence 3566677777765555443 2334 3 99999999887775 35789999999999988774321
Q ss_pred ---ccEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 306 ---QWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 306 ---~~V~~l~~sp~~~~l~t~s~--dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
.....++|+|||++|+++.. ++.|.++|+.+.+. +.++.-. + + ..+.|.+...+++.+.||.+.+.++.+
T Consensus 134 ~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v-v~tI~v~-g-~--~~~~P~g~~~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 134 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF-KRMLDVP-D-C--YHIFPTAPDTFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE-EEEEECC-S-E--EEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE-EEEEECC-C-c--ceeecCCCceeEEECCCCCEEEEECCC
Confidence 23556899999999998874 68999999998775 5555321 1 1 223355555555667799999999876
Q ss_pred -CceeeEEecc-----CCe-eEEEEeCCCCEEEEEECCCeEEEEECCCCE--EEEEec---------C-CCCCEEEEEEc
Q 009059 381 -GSCAGVFKCQ-----SGA-TQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQ---------G-HKNQVHSVCWN 441 (545)
Q Consensus 381 -~~~~~~~~~~-----~~v-~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~--~~~~~~---------~-h~~~I~~l~~s 441 (545)
++........ ..+ ....|.+..+.++..+.+|.|+++|+.+.. ....+. + ..+.+..++++
T Consensus 209 ~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~ 288 (386)
T 3sjl_D 209 EGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH 288 (386)
T ss_dssp SSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE
T ss_pred CCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeEC
Confidence 5543211110 111 124665434566667779999999997653 332221 0 11233357778
Q ss_pred CCCCEEEEEe-C----------CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCC-EEEEEEc-CCeEEEEeCCCC
Q 009059 442 TSGEYLASVS-D----------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGC-YETLELWNMTEN 508 (545)
Q Consensus 442 p~g~~l~s~s-d----------g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~-~l~~~~~-dg~I~iwd~~~~ 508 (545)
++++.++... + +.|.++|+.+. +.+..+.. ...++.+.++++++ .|+++.. ++.|.++|..++
T Consensus 289 ~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~---kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 289 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG 364 (386)
T ss_dssp TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred CCCCeEEEEeccccccccCCCCCEEEEEECCCC---eEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 9988877764 1 37999999887 55555543 34788999999997 6666554 789999999999
Q ss_pred eEEEeccCCCCeeEEEEeCC
Q 009059 509 KTLTLSAHDKLVSSLAASTV 528 (545)
Q Consensus 509 ~~~~~~~h~~~V~~l~~spd 528 (545)
+.+......+..+.|.+++|
T Consensus 365 k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 365 EELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp CEEEEECCCCSSCCEEEECC
T ss_pred cEEEEecCCCCCceeEECCc
Confidence 98854444555666777776
No 203
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.57 E-value=6.8e-13 Score=128.44 Aligned_cols=210 Identities=15% Similarity=0.131 Sum_probs=163.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCc-ccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc--CC
Q 009059 316 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SG 392 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~-~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~--~~ 392 (545)
.+++|++++.|+.|.+||.++++. +..+..+. ..+.++.+.|+|+ ++++ .++.|+.||. +++.+..+... ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~-~w~~~~~~~~~~~~~~~~pdG~-ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEI-VWEYPLEKGWECNSVAATKAGE-ILFS--YSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEE-EEEEECCTTCCCCEEEECTTSC-EEEE--CBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeE-EEEeCCCccCCCcCeEECCCCC-EEEe--CCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 457899999999999999988876 66666555 4788999999986 4543 3778999999 79999888864 35
Q ss_pred eeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecC------CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC
Q 009059 393 ATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 464 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~------h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~ 464 (545)
+..+.+.++++.+++.+. ++.|..+|. +++.+..+.. +......+++.++|.+|++.. ++.|.+||.. +
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G- 155 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G- 155 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S-
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C-
Confidence 778899999999988887 788888886 6666655541 112445667889999999988 8899999987 6
Q ss_pred CcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCC------CCeeEEEEeCCCCEEEEEe
Q 009059 465 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD------KLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 465 ~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~------~~V~~l~~spd~~~las~s 536 (545)
+.+.++... ..+..+.+.++++.++++..++.|..+|..+++.+ .+..+. ..+..+...++|.++++..
T Consensus 156 --~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 156 --QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp --CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred --CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 556666543 45667888999998888888889999999988887 543322 2378888899999888873
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.57 E-value=1.6e-12 Score=127.62 Aligned_cols=235 Identities=8% Similarity=-0.012 Sum_probs=161.2
Q ss_pred CccEEEEEEcCCCCEEEE-------EeCCCeEEEEECCCCCeeeeEec-----cCcccEEEEEEeCCCCcEEEEEcCCCc
Q 009059 305 TQWITDVRFSPSLSRLAT-------SSADRTVRVWDTENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSE 372 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t-------~s~dg~I~vwd~~~~~~~~~~~~-----~h~~~V~~l~~~p~~~~ll~s~s~dg~ 372 (545)
-....+++|.+++.++++ ...++.|.+||..+++. ..+. ++...+.++++++++..++++.. ...
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~ 93 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK--TVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLG 93 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE--EEEECCEETTEECCEEEEEECSSSSEEEEEET-TTE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE--EEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCC
Confidence 345688999999987777 56788999999877664 2222 24567899999998334554444 447
Q ss_pred EEEEECCCCceeeE-Eec-----cCCeeEEEEeCCCCEEEEEECC---------------CeEEEEECCCCEEEEEecCC
Q 009059 373 IRYWSINNGSCAGV-FKC-----QSGATQMRFQPRLGRILAAAIE---------------NYISILDVETQVCRLKLQGH 431 (545)
Q Consensus 373 I~lwd~~~~~~~~~-~~~-----~~~v~~l~~sp~~~~l~~~~~d---------------g~I~i~d~~~~~~~~~~~~h 431 (545)
|.+||.. ++.... ... ...+..+++++++..+++...+ +.|..||.. ++..... .+
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~ 170 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TA 170 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cC
Confidence 9999998 665433 221 1247899999997666555444 578888876 5443322 23
Q ss_pred CCCEEEEEEc----CCCCEEEEEe--CCcEEEEEcC-CCCC--cceEEEEeeCC-CceEEEEEcCCCCEEEEEEcCCeEE
Q 009059 432 KNQVHSVCWN----TSGEYLASVS--DELVRVWSIG-SGSK--GECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLE 501 (545)
Q Consensus 432 ~~~I~~l~~s----p~g~~l~s~s--dg~I~vwd~~-~~~~--~~~i~~~~~~~-~~v~~~~~sp~~~~l~~~~~dg~I~ 501 (545)
......++|+ ++++.|+.+. ++.|.+||+. .+.. ...+..+..+. ..+..+++++++..+++...++.|.
T Consensus 171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~ 250 (314)
T 1pjx_A 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence 3457889999 9997665554 6799999986 3311 01222232232 5678899999998777777788999
Q ss_pred EEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEE-EEeCCCcEEEcC
Q 009059 502 LWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA-SASHDKCVKIWK 545 (545)
Q Consensus 502 iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~la-s~s~Dg~I~iWd 545 (545)
+||..+++.+ .+..+...+.+++|+++++.|+ +...++.|..|+
T Consensus 251 ~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 9999866544 4555667899999999999555 444567777664
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.55 E-value=7.7e-13 Score=134.87 Aligned_cols=266 Identities=8% Similarity=0.051 Sum_probs=185.5
Q ss_pred CCCCEEEEEeCC-----CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCC
Q 009059 273 PDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENP 337 (545)
Q Consensus 273 pdg~~latg~~d-----g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s----------~dg~I~vwd~~~~ 337 (545)
++++.+++.... +.|.++|..+++.+..+.....+ .++++||+++|+++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 466665555442 69999999999999998765565 899999999988886 3678999999987
Q ss_pred CeeeeEec-c------CcccEEEEEEeCCCCcEEEEEcC-CCcEEEEECCCCceeeEEeccCCeeEEEEeCCC-CEEEEE
Q 009059 338 DYSLRTFT-G------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAA 408 (545)
Q Consensus 338 ~~~~~~~~-~------h~~~V~~l~~~p~~~~ll~s~s~-dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~~~ 408 (545)
+. +..+. + .......+.|+|++++++++... ++.|.+.|+.+++.+..+..... ....|++ ..+++.
T Consensus 160 ~v-v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LP-IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMN 235 (426)
T ss_dssp CE-EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEE
T ss_pred cE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEE
Confidence 75 44432 1 11235678999999888866543 68899999999999988876432 3334433 556677
Q ss_pred ECCCeEEEEECCCCEEEEE----ecCCCCCE-EEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEee--------
Q 009059 409 AIENYISILDVETQVCRLK----LQGHKNQV-HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-------- 474 (545)
Q Consensus 409 ~~dg~I~i~d~~~~~~~~~----~~~h~~~I-~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~-------- 474 (545)
+.||.+.+.+..+++.... +.....++ ..+.|.+++..++... .+.|.+.|+..... ..+..+..
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~ 314 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA-TFRAPIEALTEAERAD 314 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE-EECCCEESSCTTTGGG
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce-EEeeeeeecccccccc
Confidence 7889888888866654432 11111121 2356788888777666 78999999865421 11111110
Q ss_pred --CCCceEEEEEcCCCCEEEEEEc----------CCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCC-EEEEEe-CCCc
Q 009059 475 --TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKC 540 (545)
Q Consensus 475 --~~~~v~~~~~sp~~~~l~~~~~----------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~-~las~s-~Dg~ 540 (545)
.......++++++++.+++... .+.|.++|+.+++.+....-......|+|+||++ +|+++. .++.
T Consensus 315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~ 394 (426)
T 3c75_H 315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQT 394 (426)
T ss_dssp TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCe
Confidence 0111223689999998888753 3479999999999883333334689999999999 888888 4899
Q ss_pred EEEcC
Q 009059 541 VKIWK 545 (545)
Q Consensus 541 I~iWd 545 (545)
|.|+|
T Consensus 395 VsVID 399 (426)
T 3c75_H 395 LHIYD 399 (426)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99886
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.54 E-value=8.9e-13 Score=145.91 Aligned_cols=267 Identities=12% Similarity=0.028 Sum_probs=169.8
Q ss_pred CCCCEEEEEeCCCc---EEEEE--cC---CCeEEEEe------ccCCccEEEEEEcCCCCEEEEEeCC-----CeEEEEE
Q 009059 273 PDGKLLATGGHDKK---AVLWC--TE---SFTVKSTL------EEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWD 333 (545)
Q Consensus 273 pdg~~latg~~dg~---I~lwd--~~---~~~~~~~l------~~h~~~V~~l~~sp~~~~l~t~s~d-----g~I~vwd 333 (545)
|+|++++....++. -.||. .. .++....+ .+|...+..++|+|||++|+.+..+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 88998887664432 45554 33 33333221 2344578899999999999887654 4699999
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC-------------cEEEEECCCCce--eeEEeccC---CeeE
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-------------EIRYWSINNGSC--AGVFKCQS---GATQ 395 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg-------------~I~lwd~~~~~~--~~~~~~~~---~v~~ 395 (545)
+.+++. +.. ..+...+..++|+|+ +.++++...+. .|++|++.++.. ...+.... .+..
T Consensus 196 l~tg~~-~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~ 272 (741)
T 1yr2_A 196 VADGKP-LAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG 272 (741)
T ss_dssp TTTCCE-EEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCCC-CCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence 998775 322 112222357899999 77776654322 399999987663 22333222 3788
Q ss_pred EEEeCCCCEEEEEECCC-----eEEEEECCCC--EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CC----cEEEEEcCCC
Q 009059 396 MRFQPRLGRILAAAIEN-----YISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSG 463 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg-----~I~i~d~~~~--~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg----~I~vwd~~~~ 463 (545)
+.|+|+|.+|+....++ .|++||+.++ .+...+..+...+.... +|+|..|+..+ ++ .|.+||+.++
T Consensus 273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 99999999988877543 8999999877 31344555555555554 48888887776 32 5999998764
Q ss_pred CCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE--EeCCCCeEEEecc-CCCCeeEEEEeCCCCEEE-EEe---
Q 009059 464 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTENKTLTLSA-HDKLVSSLAASTVNGMVA-SAS--- 536 (545)
Q Consensus 464 ~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i--wd~~~~~~~~~~~-h~~~V~~l~~spd~~~la-s~s--- 536 (545)
. ......+..+...+..+.|. ++..+++...++..+| +++..+....+.. +...|..++++|+++.|+ +.+
T Consensus 352 ~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~ 429 (741)
T 1yr2_A 352 T-PRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFT 429 (741)
T ss_dssp S-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETT
T ss_pred c-cccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCC
Confidence 2 12233333444556677777 5556777777875555 4654444444543 467788999999987555 322
Q ss_pred CCCcEEEcC
Q 009059 537 HDKCVKIWK 545 (545)
Q Consensus 537 ~Dg~I~iWd 545 (545)
..++|++||
T Consensus 430 ~P~~i~~~d 438 (741)
T 1yr2_A 430 QPATVLALD 438 (741)
T ss_dssp EEEEEEEEE
T ss_pred CCCEEEEEE
Confidence 346777775
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.53 E-value=8.8e-12 Score=127.68 Aligned_cols=230 Identities=10% Similarity=0.036 Sum_probs=161.6
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC--cEEEEECCCCce
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSC 383 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg--~I~lwd~~~~~~ 383 (545)
.....|+|+++++++++...++.|++||..++.. ...... ..... ++|++++..++ +++.++ .|.+|+...+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~-~~~~~~-~~~~~-ia~~~~g~~l~-~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV-TTVHPG-FKGGK-PAVTKDKQRVY-SIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE-EEEEET-CCBCB-CEECTTSSEEE-EEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE-EEeecc-CCCCc-eeEecCCCcEE-EEecCCCceEEEEEcCCCce
Confidence 4688999999999777777789999999987653 233332 23334 99999987666 554444 799999876655
Q ss_pred eeEE----e-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEE----ecCCCCCE-E-EEEEcCCCCEEEEE-e
Q 009059 384 AGVF----K-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK----LQGHKNQV-H-SVCWNTSGEYLASV-S 451 (545)
Q Consensus 384 ~~~~----~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~----~~~h~~~I-~-~l~~sp~g~~l~s~-s 451 (545)
...+ . ....+.+++++|+++.|+++..++.|+.||..++..... ..++...- . .++|+|++..|+.+ .
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 4444 2 334578899999767888877788999999987754332 22222222 3 99999964444444 4
Q ss_pred -CCcEEEEEcCCCCCcceEEEEeeCC---------------CceEEEEEcCCCCEEEEEE-cCCeEEEEeCCCCeEEEec
Q 009059 452 -DELVRVWSIGSGSKGECIHELSCTG---------------NKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLS 514 (545)
Q Consensus 452 -dg~I~vwd~~~~~~~~~i~~~~~~~---------------~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~~~~ 514 (545)
++.|+.|+.... +..+.++. .....+++++++..+++-. .++.|+.||+.++....+.
T Consensus 287 ~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 287 NLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp TTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 678999987542 22332222 4478999999999555545 5679999998888877665
Q ss_pred cC---------------CCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 515 AH---------------DKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 515 ~h---------------~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
++ -.....|++++++.++++-..+++|+.+
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 55 2468899999998888877778888765
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.52 E-value=2e-11 Score=124.99 Aligned_cols=232 Identities=9% Similarity=0.040 Sum_probs=163.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCCeee
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSL 341 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg--~I~vwd~~~~~~~~ 341 (545)
.....++|+++++++++...++.|++||..++........... .. ++|+++++.|+++..++ .|.+|+...... .
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence 4688999999999888877789999999998877766554333 33 99999999999988866 788888876543 2
Q ss_pred eEe----ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeE----EeccCCe--e-EEEEeCCCCEEEEEEC
Q 009059 342 RTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQSGA--T-QMRFQPRLGRILAAAI 410 (545)
Q Consensus 342 ~~~----~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~----~~~~~~v--~-~l~~sp~~~~l~~~~~ 410 (545)
..+ ......+.+++++|++..+++ +..++.|+.||..++..... ....... . .++|+|+++.|+++..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 333 224566889999996566665 66688999999987764332 1111122 3 9999997667666654
Q ss_pred -CCeEEEEECCCCEEEEEecCCC---------------CCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEE
Q 009059 411 -ENYISILDVETQVCRLKLQGHK---------------NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHEL 472 (545)
Q Consensus 411 -dg~I~i~d~~~~~~~~~~~~h~---------------~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~ 472 (545)
.+.|+.|+.... +..+.++. .....++++++|+++++-. ++.|++|++.++ . +..+
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G---~-v~~~ 360 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG---Y-VSTV 360 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT---E-EEEE
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC---E-EEEE
Confidence 789999998755 22333322 3588999999999777654 459999997665 2 3334
Q ss_pred eeC---------------CCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 473 SCT---------------GNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 473 ~~~---------------~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
.++ -.....+++++++..+++-..++.|+.+++
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 333 245789999999765555555668877765
No 209
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.51 E-value=1.8e-12 Score=142.29 Aligned_cols=242 Identities=14% Similarity=0.058 Sum_probs=166.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-----CCCcEEEEEcCCCeEEEE-eccCCccEEEEEEcCCCCEEEEEeCCC--------
Q 009059 262 STSKVESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADR-------- 327 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~-----~dg~I~lwd~~~~~~~~~-l~~h~~~V~~l~~sp~~~~l~t~s~dg-------- 327 (545)
|...|..++|||||++||.+. ....|++||+++++.+.. +.. .....++|+ |++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 445678899999999998643 235799999999886543 211 113568999 999999988874
Q ss_pred -----eEEEEECCCCCe---eeeEecc-CcccEEEEEEeCCCCcEEEEEcC---CCcEEEEECCCCc-eeeEEeccC-Ce
Q 009059 328 -----TVRVWDTENPDY---SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDN---NSEIRYWSINNGS-CAGVFKCQS-GA 393 (545)
Q Consensus 328 -----~I~vwd~~~~~~---~~~~~~~-h~~~V~~l~~~p~~~~ll~s~s~---dg~I~lwd~~~~~-~~~~~~~~~-~v 393 (545)
.|++|++.+... .+..... |...+..+.|+|+++.++++... ...|+++|+.++. ....+.... ..
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 399999987653 1222233 44457889999999988777653 3589999998763 333333333 33
Q ss_pred eEEEEeCCCCEEEEEECC----CeEEEEECCCCEE--EEEecCCCCCEEEEEEcCCCCEEEEEe--CC--cEEEEEcCCC
Q 009059 394 TQMRFQPRLGRILAAAIE----NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSG 463 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~d----g~I~i~d~~~~~~--~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg--~I~vwd~~~~ 463 (545)
... ++++++.|+..+.. +.|.++|+.++.. ...+..|...+. .|++++++|+... ++ .|++|++..+
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 333 77777887776653 5799999987643 234555665555 8889998888776 54 7889988743
Q ss_pred CCcceEEEEee-CCCceEEEEEcCCCCEEEEEEcC----CeEEEEeCCCCeEEEe
Q 009059 464 SKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTL 513 (545)
Q Consensus 464 ~~~~~i~~~~~-~~~~v~~~~~sp~~~~l~~~~~d----g~I~iwd~~~~~~~~~ 513 (545)
....+.. ....+..+.+++++..|+....+ +.|+.||+.+++...+
T Consensus 361 ----~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l 411 (693)
T 3iuj_A 361 ----RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLY 411 (693)
T ss_dssp ----EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEE
T ss_pred ----eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEE
Confidence 2333332 33457777888888877777655 6999999988765543
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.50 E-value=1.1e-10 Score=113.40 Aligned_cols=234 Identities=8% Similarity=-0.046 Sum_probs=166.3
Q ss_pred cCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc
Q 009059 303 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382 (545)
Q Consensus 303 ~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~ 382 (545)
.....+.++++.++++++++...++.|.+||.. +......+..+...+.++++.+++. ++++...++.|..||.. ++
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SC
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-EEEEecCCCeEEEECCC-CC
Confidence 345678999999999988877778999999988 5442222333446789999998875 55566667889999988 55
Q ss_pred eeeEEec---cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEE-EEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEE
Q 009059 383 CAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV 457 (545)
Q Consensus 383 ~~~~~~~---~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~-~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~v 457 (545)
.. .+.. ...+..+++.+++..+++...++.|..||.. ++.. ..+......+.+++++++|+++++.. ++.|.+
T Consensus 94 ~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 94 FT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp EE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred eE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 43 3332 2458899999987666555558899999998 5443 33333456789999999999777666 678999
Q ss_pred EEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEE--eccCCCCeeEEEEeCCCCEEEEE
Q 009059 458 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASA 535 (545)
Q Consensus 458 wd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~--~~~h~~~V~~l~~spd~~~las~ 535 (545)
||. ++.. ...........+..+++++++..+++....+.|.+||. +++... ...+...+.+++++++++++++.
T Consensus 172 ~~~-~g~~--~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 172 ITN-TGKL--EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp ECT-TCCE--EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred ECC-CCcE--EEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence 998 4321 11122233456889999999975554445668999998 454443 33455678999999999877776
Q ss_pred eCCCcEEEcC
Q 009059 536 SHDKCVKIWK 545 (545)
Q Consensus 536 s~Dg~I~iWd 545 (545)
..++.|.+||
T Consensus 248 ~~~~~i~~~~ 257 (300)
T 2qc5_A 248 WGANQIGRIT 257 (300)
T ss_dssp TTTTEEEEEC
T ss_pred cCCCeEEEEC
Confidence 6678888775
No 211
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.50 E-value=1.3e-12 Score=130.75 Aligned_cols=261 Identities=9% Similarity=-0.008 Sum_probs=170.8
Q ss_pred CCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCeEEEEe-------ccCCccEEEEEEcCCCCEEEEEeC-----CCeE
Q 009059 264 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSA-----DRTV 329 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~--~dg~I~lwd~~~~~~~~~l-------~~h~~~V~~l~~sp~~~~l~t~s~-----dg~I 329 (545)
..+..++++++|+++++.. .++.++||.+.+++.. .+ ..|-..+..|+|.++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999988864 2343566665555543 22 235568999999999876665433 5789
Q ss_pred EEEECCCCCeeeeEecc------CcccEEEEEEeCCCCcEEEEEc---CCCcEEEEECCCCceeeEEeccCCe--eEEEE
Q 009059 330 RVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSCAGVFKCQSGA--TQMRF 398 (545)
Q Consensus 330 ~vwd~~~~~~~~~~~~~------h~~~V~~l~~~p~~~~ll~s~s---~dg~I~lwd~~~~~~~~~~~~~~~v--~~l~~ 398 (545)
.+||+.+++. +..+.. +...+..+++.+++..++++.. .++.|.+||+.+++..+.+..+... ....+
T Consensus 96 ~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 96 VAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 9999987764 343332 2245689999987666666665 6789999999988776655321111 01334
Q ss_pred eCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CC-cEEEEEcCC---CCC--cc---e
Q 009059 399 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGS---GSK--GE---C 468 (545)
Q Consensus 399 sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg-~I~vwd~~~---~~~--~~---~ 468 (545)
.+++..+.+...++.+..|. ..+..|+|+|+|+.|+.+. ++ .|..++... +.. .. .
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 44555555555666655442 2468899999999888877 44 555555321 100 00 0
Q ss_pred EEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEecc--CCCCeeEEEEeCCCCEEEEEeCCCcE
Q 009059 469 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCV 541 (545)
Q Consensus 469 i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~--h~~~V~~l~~spd~~~las~s~Dg~I 541 (545)
+. ..++......+++++++..+++...++.|.+||..+++...+.. +...+.+++|.+++.++++.+..+.+
T Consensus 241 ~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 241 IE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp CE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred eE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 11 11233456678999999877777778899999995666543332 34568999999999888887654433
No 212
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.50 E-value=5.4e-11 Score=116.29 Aligned_cols=228 Identities=10% Similarity=0.039 Sum_probs=154.7
Q ss_pred eccCCccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC
Q 009059 301 LEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379 (545)
Q Consensus 301 l~~h~~~V~~l~~sp~~-~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~ 379 (545)
+..+..-..+..|++++ .++++...++.|..||..++.. ..+. ....+.++++++++. ++++ . +..|.+||..
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~~-~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~ 81 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRVT-MDAPVSSVALRQSGG-YVAT-I-GTKFCALNWK 81 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEEE-CSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEEe-CCCceEEEEECCCCC-EEEE-E-CCeEEEEECC
Confidence 34445566789999954 4556666788999999987653 2332 456799999999987 4433 3 5679999998
Q ss_pred CCceeeEEecc-----CCeeEEEEeCCCCEEEEEEC-----------CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCC
Q 009059 380 NGSCAGVFKCQ-----SGATQMRFQPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 443 (545)
Q Consensus 380 ~~~~~~~~~~~-----~~v~~l~~sp~~~~l~~~~~-----------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~ 443 (545)
+++........ ..+..+++++++..+++... .+.|+.+|.. ++... +..+....+.++|+|+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLD 159 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTT
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCC
Confidence 87765443321 23678999999875554322 2355666554 33222 2223345689999999
Q ss_pred CCEEEEEe--CCcEEEEEcC--CCCCc--ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccC
Q 009059 444 GEYLASVS--DELVRVWSIG--SGSKG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 516 (545)
Q Consensus 444 g~~l~s~s--dg~I~vwd~~--~~~~~--~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h 516 (545)
++.|+.+. ++.|.+|++. ++... ..+..+.........++++++|+..++....+.|.+||..+++.+ .+..+
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 99776655 6799999984 44211 122233333456789999999986666666778999999988877 55556
Q ss_pred CCCeeEEEEe-CCCCEEEEEe
Q 009059 517 DKLVSSLAAS-TVNGMVASAS 536 (545)
Q Consensus 517 ~~~V~~l~~s-pd~~~las~s 536 (545)
...+++++|. |+++.|+.++
T Consensus 240 ~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 240 VDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp SSBEEEEEEESGGGCEEEEEE
T ss_pred CCCceEEEEeCCCCCEEEEEc
Confidence 6789999998 8887665444
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.49 E-value=7.2e-11 Score=115.38 Aligned_cols=229 Identities=12% Similarity=0.095 Sum_probs=156.8
Q ss_pred CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 009059 261 ASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 339 (545)
Q Consensus 261 ~H~~~V~~l~~spd-g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~ 339 (545)
.+..-..+..|+++ +.++++...++.|..||..+++.. .+ .....+.+++++++++++++ . ++.|.+||..++..
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence 33344568899995 445666667899999999887653 23 24567999999999995554 4 56799999987653
Q ss_pred eee-Eecc--CcccEEEEEEeCCCCcEEEEEcC----------CCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEE
Q 009059 340 SLR-TFTG--HSTTVMSLDFHPSKEDLLCSCDN----------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL 406 (545)
Q Consensus 340 ~~~-~~~~--h~~~V~~l~~~p~~~~ll~s~s~----------dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 406 (545)
... .... ....+..+++.|+|..++.+... .+.|+.++.. ++.............++|+|+++.++
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~ly 164 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFY 164 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEE
Confidence 211 1111 12458899999998744422221 2344444443 44433344445578899999998776
Q ss_pred EEEC-CCeEEEEEC--CCCEE-----EEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCC
Q 009059 407 AAAI-ENYISILDV--ETQVC-----RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN 477 (545)
Q Consensus 407 ~~~~-dg~I~i~d~--~~~~~-----~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~ 477 (545)
++.. ++.|.+||+ .++.. ...+..+...+..++++++|++.++.. .+.|.+||..++ +.+..+.....
T Consensus 165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG---~~~~~i~~p~~ 241 (297)
T 3g4e_A 165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG---KRLQTVKLPVD 241 (297)
T ss_dssp EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC---CEEEEEECSSS
T ss_pred EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc---eEEEEEECCCC
Confidence 6654 789999987 45432 223333446788999999998887776 668999998877 56667776667
Q ss_pred ceEEEEEc-CCCCEEEEEEcC
Q 009059 478 KFHSCVFH-PTFPSLLVIGCY 497 (545)
Q Consensus 478 ~v~~~~~s-p~~~~l~~~~~d 497 (545)
.+++++|. |+++.|++++..
T Consensus 242 ~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 242 KTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp BEEEEEEESGGGCEEEEEEBC
T ss_pred CceEEEEeCCCCCEEEEEcCC
Confidence 89999998 888888877764
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.49 E-value=1e-12 Score=132.11 Aligned_cols=172 Identities=14% Similarity=0.121 Sum_probs=137.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-----------EEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~-----------~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
.+..+++++...+|++|+.+ .+++|++...+ ..... .+.. |+.|+| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 58999999999999999987 56669865433 11222 3566 999999 89999999 889999999
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
+.+... ......|...+.++.+.+. . ++++..||.|.+||+.++.... ....+++++|+|+| ++++..||.
T Consensus 113 v~sl~~-~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 113 LEELSE-FRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp SSSTTC-EEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSC
T ss_pred chhhhc-cCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCc
Confidence 987653 4556667788888887754 3 5578889999999999887654 34689999999997 788999999
Q ss_pred EEEEECCCCEE--EEEe------c---CCCCCEEEEEEcCCCCEEEEEe
Q 009059 414 ISILDVETQVC--RLKL------Q---GHKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 414 I~i~d~~~~~~--~~~~------~---~h~~~I~~l~~sp~g~~l~s~s 451 (545)
+++|+...+.. ..++ . +|...|.+|+|.+++.++++-.
T Consensus 184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99999988875 5556 3 3778999999999999988744
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.46 E-value=2.2e-10 Score=113.56 Aligned_cols=220 Identities=15% Similarity=0.085 Sum_probs=153.3
Q ss_pred eEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEe
Q 009059 266 VESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 344 (545)
Q Consensus 266 V~~l~~spdg~-~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~ 344 (545)
..+.+|+|++. ++++...++.|.+||..+++... +. ....+.+++|+++++++++. .+ .|.+||..++.. ..+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~--~~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL--TLH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE--EEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE--EEE
Confidence 45789999754 56666678899999998876543 22 34679999999999877754 44 499999987664 222
Q ss_pred ccC-----cccEEEEEEeCCCCcEEEEEcC------CCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-CC
Q 009059 345 TGH-----STTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN 412 (545)
Q Consensus 345 ~~h-----~~~V~~l~~~p~~~~ll~s~s~------dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg 412 (545)
... ...+.+++++|++..++ +... .+.|+.++ +++.............++|+++++.++++.. ++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v-~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWI-GTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEE-EEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEE-EeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 211 24688999999986443 4321 24566666 4554443333345778999999887776654 68
Q ss_pred eEEEEECC--CC-E-----EEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEE
Q 009059 413 YISILDVE--TQ-V-----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 483 (545)
Q Consensus 413 ~I~i~d~~--~~-~-----~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~ 483 (545)
.|.+||+. ++ . ....+......+..++++++|.++++.. ++.|.+||. ++ ..+..+......+.+++
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g---~~~~~i~~~~~~~~~~a 277 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG---NHIARYEVPGKQTTCPA 277 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC---CEEEEEECSCSBEEEEE
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC---CEEEEEECCCCCcEEEE
Confidence 99999985 55 2 2333433445678999999998877766 678999997 34 45556666666799999
Q ss_pred Ec-CCCCEEEEEEcCC
Q 009059 484 FH-PTFPSLLVIGCYE 498 (545)
Q Consensus 484 ~s-p~~~~l~~~~~dg 498 (545)
|. +++..|++++..+
T Consensus 278 f~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 278 FIGPDASRLLVTSARE 293 (326)
T ss_dssp EESTTSCEEEEEEBCT
T ss_pred EecCCCCEEEEEecCC
Confidence 98 8888787776554
No 216
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.46 E-value=1.3e-11 Score=125.81 Aligned_cols=259 Identities=13% Similarity=0.146 Sum_probs=180.5
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCeEEEEeccC-----
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH----- 304 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~----------~dg~I~lwd~~~~~~~~~l~~h----- 304 (545)
..+.+.|..++.....+..- ..+ .++++|||++|+++. .++.|.++|..+++.+..+.-.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG---~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~ 173 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGG---FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRF 173 (426)
T ss_dssp EEEEEEETTTTEEEEEEEEC---SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred CeEEEEECCCCEEEEEEECC---CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccc
Confidence 45677777777665555432 234 799999999888876 3678999999999998776421
Q ss_pred --CccEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 305 --TQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 305 --~~~V~~l~~sp~~~~l~t~s~--dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
......++|+||+++|+++.. ++.|.+.|+.+.+. +..+.--. . ....|++...+++.+.||.+.+.++.+
T Consensus 174 ~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv-v~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 174 LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF-DRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE-EEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCC
Confidence 123456899999999999875 57899999998775 55444211 1 334555556666677788888888866
Q ss_pred CceeeE----EeccCC--eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEE--EecC----------CCCCEEEEEEcC
Q 009059 381 GSCAGV----FKCQSG--ATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQG----------HKNQVHSVCWNT 442 (545)
Q Consensus 381 ~~~~~~----~~~~~~--v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~--~~~~----------h~~~I~~l~~sp 442 (545)
++.... +..... ...+.|.++++.++.....+.|.+.|........ .+.. .......++++|
T Consensus 249 ~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~ 328 (426)
T 3c75_H 249 GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR 328 (426)
T ss_dssp TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG
T ss_pred CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC
Confidence 655422 111111 1235678898888888889999999987654221 1110 001112368899
Q ss_pred CCCEEEEEe-----------CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCC-EEEEEE-cCCeEEEEeCCCCe
Q 009059 443 SGEYLASVS-----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENK 509 (545)
Q Consensus 443 ~g~~l~s~s-----------dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~-~l~~~~-~dg~I~iwd~~~~~ 509 (545)
+++.+++.. ++.|.++|+.+. +.+..+.. ......+.|+|+++ .+++.. .++.|.++|+.+++
T Consensus 329 dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~---kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 329 QSDRIYLLVDQRDEWKHKAASRFVVVLNAETG---ERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp GGTEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCEEEEEecccccccccCCCCEEEEEECCCC---eEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 988777653 237999999887 55555543 23588999999999 888888 48899999999999
Q ss_pred EEE
Q 009059 510 TLT 512 (545)
Q Consensus 510 ~~~ 512 (545)
.+.
T Consensus 405 vv~ 407 (426)
T 3c75_H 405 ELR 407 (426)
T ss_dssp EEE
T ss_pred EEE
Confidence 883
No 217
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.45 E-value=3.1e-11 Score=118.45 Aligned_cols=234 Identities=6% Similarity=0.001 Sum_probs=158.2
Q ss_pred EEeccCCccEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEE
Q 009059 299 STLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 377 (545)
Q Consensus 299 ~~l~~h~~~V~~l~~sp~~~-~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd 377 (545)
..+..+........|+++++ ++++...++.|..|+.. +. ...+..+...+..+++++++. ++++...++.|.+|+
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~--~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT--VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSD 113 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC--EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEEC
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC--EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEEC
Confidence 33444555678899999998 56667778999999984 43 345555667899999999975 554555567899999
Q ss_pred CCCCceeeEEec-----cCCeeEEEEeCCCCEEEE----EEC-------------CCeEEEEECCCCEEEEEecCCCCCE
Q 009059 378 INNGSCAGVFKC-----QSGATQMRFQPRLGRILA----AAI-------------ENYISILDVETQVCRLKLQGHKNQV 435 (545)
Q Consensus 378 ~~~~~~~~~~~~-----~~~v~~l~~sp~~~~l~~----~~~-------------dg~I~i~d~~~~~~~~~~~~h~~~I 435 (545)
.. ++....... ...+..+.+.++|..+++ +.. .+.|+.||..+++..... .....
T Consensus 114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p 190 (305)
T 3dr2_A 114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP 190 (305)
T ss_dssp TT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred CC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence 86 553322211 123668999999876664 321 357888888766544332 33467
Q ss_pred EEEEEcCCCCEEEEEe-C------CcEEEEEcCCCCCcceEEEE-eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 436 HSVCWNTSGEYLASVS-D------ELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 436 ~~l~~sp~g~~l~s~s-d------g~I~vwd~~~~~~~~~i~~~-~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
..++|+|+++.|+.+. . +.|.+|++.... ......+ .........++++++|+ |+++.. +.|.+|+...
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~-~gv~~~~~~g 267 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG-TGVCVFDSDG 267 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEECCS-SEEEEECTTS
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEecC-CcEEEECCCC
Confidence 8899999999777766 4 689999987542 1111111 11233456789999998 555554 4699999854
Q ss_pred CeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 508 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 508 ~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
.....+..+. .+.+++|+++++.|..++.++..++
T Consensus 268 ~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 268 QLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp CEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 4433444443 6899999999998888888776554
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.43 E-value=3.6e-10 Score=111.97 Aligned_cols=220 Identities=9% Similarity=0.024 Sum_probs=148.4
Q ss_pred cEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee
Q 009059 307 WITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 385 (545)
Q Consensus 307 ~V~~l~~sp~~~-~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~ 385 (545)
...+++|+|++. ++++...++.|.+||..++.. ..+. ....+.+++|.+++. ++++. .+ .|.+||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~~-~~~~v~~i~~~~dg~-l~v~~-~~-gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK--TVHA-LPFMGSALAKISDSK-QLIAS-DD-GLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEEE-CSSCEEEEEEEETTE-EEEEE-TT-EEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--EEEE-CCCcceEEEEeCCCe-EEEEE-CC-CEEEEECCCCcEEE
Confidence 356788999754 556666788999999987643 3332 346799999999975 44343 33 49999998887654
Q ss_pred EEecc-----CCeeEEEEeCCCCEEEEEEC------CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--C
Q 009059 386 VFKCQ-----SGATQMRFQPRLGRILAAAI------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D 452 (545)
Q Consensus 386 ~~~~~-----~~v~~l~~sp~~~~l~~~~~------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--d 452 (545)
..... ..+..+.+++++..+++... .+.|+.++ +++..... .+......++|+|+++.|+.+. +
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~-~~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLF-ADISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEE-EEESSEEEEEECTTSCEEEEEETTT
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEee-CCCcccCCeEEcCCCCEEEEEECCC
Confidence 33221 23788999999875554432 25677777 45543322 2334578999999998776665 6
Q ss_pred CcEEEEEcC--CC-CCc--ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEe
Q 009059 453 ELVRVWSIG--SG-SKG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 526 (545)
Q Consensus 453 g~I~vwd~~--~~-~~~--~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s 526 (545)
+.|.+||+. ++ ... ..+..+.........+++++++.++++...++.|.+||.. ++.+ .+..+...+++++|+
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECCCCCcEEEEEe
Confidence 799999986 44 211 2232332234567889999999866666567899999984 5444 555566679999998
Q ss_pred -CCCCEEEEEe
Q 009059 527 -TVNGMVASAS 536 (545)
Q Consensus 527 -pd~~~las~s 536 (545)
++++.|+.++
T Consensus 280 g~d~~~L~vt~ 290 (326)
T 2ghs_A 280 GPDASRLLVTS 290 (326)
T ss_dssp STTSCEEEEEE
T ss_pred cCCCCEEEEEe
Confidence 8887665544
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.43 E-value=5.4e-11 Score=116.70 Aligned_cols=231 Identities=11% Similarity=0.119 Sum_probs=158.9
Q ss_pred cCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 009059 260 PASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg~-~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
..+........|+++|+ +++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.. +.
T Consensus 41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~ 117 (305)
T 3dr2_A 41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ 117 (305)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence 34445577899999998 5667777899999997 444 34455566779999999999977666666889999986 44
Q ss_pred eeeeEeccC-----cccEEEEEEeCCCCcEEEE----EcC-------------CCcEEEEECCCCceeeEEeccCCeeEE
Q 009059 339 YSLRTFTGH-----STTVMSLDFHPSKEDLLCS----CDN-------------NSEIRYWSINNGSCAGVFKCQSGATQM 396 (545)
Q Consensus 339 ~~~~~~~~h-----~~~V~~l~~~p~~~~ll~s----~s~-------------dg~I~lwd~~~~~~~~~~~~~~~v~~l 396 (545)
. ..+..+ ...+..+++.++|. ++++ |.. .+.|+.||..+++..... .......+
T Consensus 118 ~--~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl 193 (305)
T 3dr2_A 118 A--HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGL 193 (305)
T ss_dssp E--EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEE
T ss_pred E--EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcce
Confidence 2 222211 13467899999975 5544 321 256888888777655444 44567889
Q ss_pred EEeCCCCEEEEEECC------CeEEEEECCCCEE--EEEe-cCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcc
Q 009059 397 RFQPRLGRILAAAIE------NYISILDVETQVC--RLKL-QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE 467 (545)
Q Consensus 397 ~~sp~~~~l~~~~~d------g~I~i~d~~~~~~--~~~~-~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~ 467 (545)
+|+|++..|+++... +.|++|++..... ...+ ......+..++++++|++.++. .+.|.+|+.. + .
T Consensus 194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~-g---~ 268 (305)
T 3dr2_A 194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD-G---Q 268 (305)
T ss_dssp EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSEEEEECTT-S---C
T ss_pred EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCcEEEECCC-C---C
Confidence 999999988888765 7899999876431 1111 1123455678999999965554 3459999974 3 4
Q ss_pred eEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 468 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 468 ~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
.+..+.... .+.+++|.++++.|++++.+ .|+.++
T Consensus 269 ~~~~~~~~~-~~~~~~f~~d~~~L~it~~~-~l~~~~ 303 (305)
T 3dr2_A 269 LLGHIPTPG-TASNCTFDQAQQRLFITGGP-CLWMLP 303 (305)
T ss_dssp EEEEEECSS-CCCEEEECTTSCEEEEEETT-EEEEEE
T ss_pred EEEEEECCC-ceeEEEEeCCCCEEEEEcCC-eEEEEE
Confidence 455555444 58899999999988888875 454444
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.42 E-value=8.1e-12 Score=125.22 Aligned_cols=266 Identities=12% Similarity=0.062 Sum_probs=178.0
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCeEEEEeccC------
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH------ 304 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~----------~dg~I~lwd~~~~~~~~~l~~h------ 304 (545)
.+.+.|..++.....+. .-..+ .+.|+||+++|+++. .++.|.+||+.+++.+.++..+
T Consensus 47 ~vsvID~~t~~v~~~i~---vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSL---GAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTTEEEEEEE---ECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred eEEEEECCCCeEEEEEe---CCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence 45566777766554433 22334 799999999998886 3688999999999999888643
Q ss_pred -CccEEEEEEcCCCCEEEEEeC--CCeEEE--EECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC
Q 009059 305 -TQWITDVRFSPSLSRLATSSA--DRTVRV--WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379 (545)
Q Consensus 305 -~~~V~~l~~sp~~~~l~t~s~--dg~I~v--wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~ 379 (545)
......++|+|||++|+++.. +..|.+ +|+.+ +..+.- .+. +.+.|++...+++.+.|+.+.+.|+.
T Consensus 122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECC
T ss_pred cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECc
Confidence 123567999999999999875 457888 98876 233321 111 22456666677677788888888988
Q ss_pred C-----Cceee----EEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCC--EEEEEecCC----------CCCEEEE
Q 009059 380 N-----GSCAG----VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQGH----------KNQVHSV 438 (545)
Q Consensus 380 ~-----~~~~~----~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h----------~~~I~~l 438 (545)
+ ++... .+....... . .++++.++..+. +.|.+.|+.+. +.+..+... ......+
T Consensus 194 ~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v 269 (368)
T 1mda_H 194 AAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV 269 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred cccccCCeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceee
Confidence 6 43321 111111122 3 677777777777 99999999754 233222111 0111226
Q ss_pred EEcCCCCEEEEEe--C--------CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE-EE-cCCeEEEEeCC
Q 009059 439 CWNTSGEYLASVS--D--------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV-IG-CYETLELWNMT 506 (545)
Q Consensus 439 ~~sp~g~~l~s~s--d--------g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~-~~-~dg~I~iwd~~ 506 (545)
+++|+++.++++. . +.+.++|+.+. +.+..+... .....++|+|+++++++ .. .++.|.++|+.
T Consensus 270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~---~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG---QTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC---CEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred EEcCCCCEEEEEeccccCcccccCCCEEEEECCCC---eEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence 8999998777643 2 35679999887 455555432 26889999999985544 44 48999999999
Q ss_pred CCeEEEeccCCCCeeEEEEeC
Q 009059 507 ENKTLTLSAHDKLVSSLAAST 527 (545)
Q Consensus 507 ~~~~~~~~~h~~~V~~l~~sp 527 (545)
+++.+....-......+++.+
T Consensus 346 t~kvv~~I~vg~~P~~i~~~~ 366 (368)
T 1mda_H 346 SDQDQSSVELDKGPESLSVQN 366 (368)
T ss_dssp SCEEEEECCCCSCCCEEECCC
T ss_pred CCcEEEEEECCCCCCEEEeec
Confidence 999995544455566777654
No 221
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.37 E-value=7.9e-10 Score=111.61 Aligned_cols=255 Identities=13% Similarity=0.077 Sum_probs=164.7
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccE--
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-- 351 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V-- 351 (545)
++..|++++.++.|..+|..+++.+................ +..++.++.++.|..+|..+++. +..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~-~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAV-KWTVNLDMPSLSL 178 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCE-EEEEECCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcE-EEEEeCCCCceee
Confidence 35577788889999999999999887665443222122222 45788888999999999998875 33333221111
Q ss_pred ---EEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCee--------EEEEeC--CCCEEEEEECCCeEEEEE
Q 009059 352 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT--------QMRFQP--RLGRILAAAIENYISILD 418 (545)
Q Consensus 352 ---~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~--------~l~~sp--~~~~l~~~~~dg~I~i~d 418 (545)
...... +. .++.+..++.|..+|..+++.+.......... .+...| .++.+++++.++.|..+|
T Consensus 179 ~~~~~~~~~--~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 179 RGESAPTTA--FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD 255 (376)
T ss_dssp CCCCCCEEE--TT-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred cCCCCcEEE--CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence 122222 23 44577778999999999999887776432100 010111 247788888899999999
Q ss_pred CCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEee-CCCceEEEEEcCCCCEEEEEEc
Q 009059 419 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGC 496 (545)
Q Consensus 419 ~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~-~~~~v~~~~~sp~~~~l~~~~~ 496 (545)
.++++.+..... .....+... +..|+.++ ++.|..+|..++ +.+..... ....+..... .+..|++++.
T Consensus 256 ~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~ 326 (376)
T 3q7m_A 256 LRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDRVMALTIDGG---VTLWTQSDLLHRLLTSPVL--YNGNLVVGDS 326 (376)
T ss_dssp TTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCCEEEEETTTC---CEEEEECTTTTSCCCCCEE--ETTEEEEECT
T ss_pred CCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCeEEEEECCCC---cEEEeecccCCCcccCCEE--ECCEEEEEeC
Confidence 999988876653 334455443 45555555 889999999888 34444331 1122222222 2456889999
Q ss_pred CCeEEEEeCCCCeEE-EeccCCCCeeE-EEEeCCCCEEEEEeCCCcEEEcC
Q 009059 497 YETLELWNMTENKTL-TLSAHDKLVSS-LAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 497 dg~I~iwd~~~~~~~-~~~~h~~~V~~-l~~spd~~~las~s~Dg~I~iWd 545 (545)
++.|+++|..+++.+ ........+.. ... .+..|+.++.||.|..||
T Consensus 327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 999999999999987 33332333322 222 256788899999999875
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.33 E-value=5.2e-11 Score=119.34 Aligned_cols=246 Identities=11% Similarity=0.006 Sum_probs=164.0
Q ss_pred cEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCCeeeeEeccC-------c
Q 009059 286 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENPDYSLRTFTGH-------S 348 (545)
Q Consensus 286 ~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s----------~dg~I~vwd~~~~~~~~~~~~~h-------~ 348 (545)
.|.++|..+++.+.++.....+ .+.|+||+++++++. .++.|.+||+.+.+. +..+.-. .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-v~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-EEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-EEEEECCCccccccC
Confidence 8889999999999998766666 799999999999886 368999999999876 5555422 1
Q ss_pred ccEEEEEEeCCCCcEEEEEcC-CCcEEE--EECCCCceeeEEeccCCeeEEEEeCCCC-EEEEEECCCeEEEEECCC---
Q 009059 349 TTVMSLDFHPSKEDLLCSCDN-NSEIRY--WSINNGSCAGVFKCQSGATQMRFQPRLG-RILAAAIENYISILDVET--- 421 (545)
Q Consensus 349 ~~V~~l~~~p~~~~ll~s~s~-dg~I~l--wd~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~~~~~dg~I~i~d~~~--- 421 (545)
.....+.++|+++.++++... +..|.+ +|+.+ +..+..... +.+.|++. .+++.+.||.+.+.|+++
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 245689999999888866543 467888 99877 455543322 22334433 445566788888999987
Q ss_pred --CEEEEE----ecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeC----------CCceEEEEEc
Q 009059 422 --QVCRLK----LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFH 485 (545)
Q Consensus 422 --~~~~~~----~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~----------~~~v~~~~~s 485 (545)
++.... +.....+. .+...+.++++.. +.|.+.|+..... ..+..+... ......++++
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCC-EEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred cCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcc-eEEEEEEeccccccccccccCcceeeEEc
Confidence 433211 11112333 3333444455555 8899999865321 122211110 0111226899
Q ss_pred CCCCEEEEEEc-C--------CeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCC-EEEEEe-CCCcEEEcC
Q 009059 486 PTFPSLLVIGC-Y--------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 545 (545)
Q Consensus 486 p~~~~l~~~~~-d--------g~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~-~las~s-~Dg~I~iWd 545 (545)
|+++.++++.. . +.+.++|+.+++.+....-......|+|+||++ ++++.. .++.|.++|
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 99998888654 2 367799999999884333333689999999998 566666 589999986
No 223
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.30 E-value=3.8e-10 Score=122.99 Aligned_cols=263 Identities=12% Similarity=0.090 Sum_probs=178.9
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCcc-----------EEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----------ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~-----------V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
+..|++++.++.|.-+|..+|+.+..+...... ...+++ ++..|++++.|+.|..+|..+++. +..
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~-~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKE-VWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE-EEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCE-Eee
Confidence 456777777899999999999999877543210 112333 456888889999999999999886 444
Q ss_pred eccC-c----ccEE-EEEEeCCCCcEEEEEc-----CCCcEEEEECCCCceeeEEeccCCe-------------------
Q 009059 344 FTGH-S----TTVM-SLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSGA------------------- 393 (545)
Q Consensus 344 ~~~h-~----~~V~-~l~~~p~~~~ll~s~s-----~dg~I~lwd~~~~~~~~~~~~~~~v------------------- 393 (545)
+..+ . ..+. ...+. +..+++..+ .++.|+.||..+++.+..+......
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred ecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 4332 1 1111 11112 234443332 2689999999999998877642211
Q ss_pred --------------eEEEEeCCCCEEEEEECCC-------------------eEEEEECCCCEEEEEecC--CC------
Q 009059 394 --------------TQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK------ 432 (545)
Q Consensus 394 --------------~~l~~sp~~~~l~~~~~dg-------------------~I~i~d~~~~~~~~~~~~--h~------ 432 (545)
..+.++++++.++++..++ .|..+|.++++.+..++. |.
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 3578899989988887664 599999999999887664 21
Q ss_pred -CCEEEEEEcCCC---CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC-----------Cce-----------------
Q 009059 433 -NQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCTG-----------NKF----------------- 479 (545)
Q Consensus 433 -~~I~~l~~sp~g---~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~-----------~~v----------------- 479 (545)
.....+....+| .+|+.++ +|.|+++|..+++ .+..+.... ..+
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK---FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC---EeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 122233333467 5777777 8999999999884 343332111 111
Q ss_pred -------EEEEEcCCCCEEEEEEcC-------------------------------------------CeEEEEeCCCCe
Q 009059 480 -------HSCVFHPTFPSLLVIGCY-------------------------------------------ETLELWNMTENK 509 (545)
Q Consensus 480 -------~~~~~sp~~~~l~~~~~d-------------------------------------------g~I~iwd~~~~~ 509 (545)
..++++|+...+++...+ +.|..||+.+++
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 146889988888776432 689999999999
Q ss_pred EEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 510 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 510 ~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+-...+...+....+..++.+++.++.||.+++||
T Consensus 469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 883333555566666778888999999999999986
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.30 E-value=2e-14 Score=145.49 Aligned_cols=223 Identities=14% Similarity=0.055 Sum_probs=120.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcc-cEE
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVM 352 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~-~V~ 352 (545)
++..|++++.|+.|+.||..+|+.+..+.. +.+.+..+..++..+++++.||.|+.||..+++. +..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC-SEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-eeeeeccCccccc
Confidence 567899999999999999999999988876 4555555666787888888999999999987764 333332221 110
Q ss_pred -EEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCC
Q 009059 353 -SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH 431 (545)
Q Consensus 353 -~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h 431 (545)
+..+. .+ ..+++++.++.|+.||..+|+.+..+.... ...++|+++.+++++.++.|+.||.++++.+..+..+
T Consensus 85 ~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 159 (369)
T 2hz6_A 85 ASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF 159 (369)
T ss_dssp TCSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred cCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence 01111 22 345577779999999999999888776543 2345667888999999999999999998766554321
Q ss_pred CCCEEEEEEcCC----CCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE--EEcCCeEEEEeC
Q 009059 432 KNQVHSVCWNTS----GEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV--IGCYETLELWNM 505 (545)
Q Consensus 432 ~~~I~~l~~sp~----g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~--~~~dg~I~iwd~ 505 (545)
. ....++..+ +.+++...++.|+.||..++ +.+.........+....+++++...+. ...++.++.+|.
T Consensus 160 ~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG---~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~ 234 (369)
T 2hz6_A 160 D--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG---DVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTF 234 (369)
T ss_dssp E--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC---CEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHH
T ss_pred c--ccCccccCCccccceEEEECCCCEEEEEECCCC---cEEEEecCCCceEEEEEecCCceEeccceeecccceeeeeh
Confidence 1 122233332 44444334999999999887 445555433332333445556542110 011334556665
Q ss_pred CCCe
Q 009059 506 TENK 509 (545)
Q Consensus 506 ~~~~ 509 (545)
.+++
T Consensus 235 ~tG~ 238 (369)
T 2hz6_A 235 MSGE 238 (369)
T ss_dssp HHHH
T ss_pred hcCC
Confidence 5554
No 225
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.30 E-value=1.6e-08 Score=96.85 Aligned_cols=247 Identities=9% Similarity=0.010 Sum_probs=160.9
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEE-----EEeccCCccEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeeeEeccCcc
Q 009059 276 KLLATGGHDKKAVLWCTESFTVK-----STLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHST 349 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~-----~~l~~h~~~V~~l~~sp~~~~l~t~s-~dg~I~vwd~~~~~~~~~~~~~h~~ 349 (545)
.+|+.+.. +.|+.+++...... ..+......+..++|++++..|+.+. .++.|.++++..... ...+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEECCCC
Confidence 45555543 47888887754321 12222234578999999766665554 578999999976542 223322235
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECC---CeEEEEECCCCEEE
Q 009059 350 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE---NYISILDVETQVCR 425 (545)
Q Consensus 350 ~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~d---g~I~i~d~~~~~~~ 425 (545)
....+++++++..++++....+.|.++++............ .....++++|+++.++++... +.|..+++......
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~ 159 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence 68899999987778877777889999998754332222222 457899999987887777653 68989988643322
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc-CCeEEE
Q 009059 426 LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLEL 502 (545)
Q Consensus 426 ~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~I~i 502 (545)
......-.....+++++++..|+.+. .+.|.++|+... .....+. .......+++. +..|+++.. .+.|.+
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIA 233 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEE
Confidence 22222335688999999887776666 669999998653 2222222 23344566654 456666665 469999
Q ss_pred EeCCCCeEE-EeccCC-CCeeEEEEeCCCC
Q 009059 503 WNMTENKTL-TLSAHD-KLVSSLAASTVNG 530 (545)
Q Consensus 503 wd~~~~~~~-~~~~h~-~~V~~l~~spd~~ 530 (545)
+|..+++.+ .+.... .....+++.|++.
T Consensus 234 ~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 234 MDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EeCCCCCceEEEccccccccceeeecCccC
Confidence 999998877 443222 3578888888764
No 226
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.29 E-value=1.7e-10 Score=126.52 Aligned_cols=236 Identities=13% Similarity=0.102 Sum_probs=156.7
Q ss_pred cCCccEEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC-------
Q 009059 303 EHTQWITDVRFSPSLSRLATSS-----ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------- 370 (545)
Q Consensus 303 ~h~~~V~~l~~sp~~~~l~t~s-----~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d------- 370 (545)
+|...+..++|+|||++||.+. ....|++||+.+++.....+.. .....++|+ |++.++++...+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence 4566788999999999988543 2357999999988742222221 113578899 988887665432
Q ss_pred -----CcEEEEECCCCce--eeEEecc----CCeeEEEEeCCCCEEEEEEC----CCeEEEEECCCCE-EEEEecCCCCC
Q 009059 371 -----SEIRYWSINNGSC--AGVFKCQ----SGATQMRFQPRLGRILAAAI----ENYISILDVETQV-CRLKLQGHKNQ 434 (545)
Q Consensus 371 -----g~I~lwd~~~~~~--~~~~~~~----~~v~~l~~sp~~~~l~~~~~----dg~I~i~d~~~~~-~~~~~~~h~~~ 434 (545)
..|++|++.+... ...+... .....+.|+|++.+|+.... .+.|+++|+.++. ....+..+...
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 3499999987653 2233222 23678999999998876553 2589999998763 33445555555
Q ss_pred EEEEEEcCCCCEEEEEe--C---CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCC
Q 009059 435 VHSVCWNTSGEYLASVS--D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMT 506 (545)
Q Consensus 435 I~~l~~sp~g~~l~s~s--d---g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~ 506 (545)
.... |+++|..|+..+ + +.|.++|+.++... ....+..+...+. .|++++.+|+....++ .|++||+.
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-HWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-ccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 5555 566666555444 3 47999999876431 1234445555554 8999999888777655 79999998
Q ss_pred CCeEEEec-cCCCCeeEEEEeCCCCEEEEEeCC----CcEEEcC
Q 009059 507 ENKTLTLS-AHDKLVSSLAASTVNGMVASASHD----KCVKIWK 545 (545)
Q Consensus 507 ~~~~~~~~-~h~~~V~~l~~spd~~~las~s~D----g~I~iWd 545 (545)
++....+. ...+.+..+.++++++.|+....+ +.|..||
T Consensus 359 g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 359 GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 77655443 345667788888888766554433 6677664
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.29 E-value=3.9e-10 Score=123.12 Aligned_cols=265 Identities=11% Similarity=0.107 Sum_probs=173.9
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCcc----------E-EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~----------V-~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
+..|++++.++.|+.+|..+|+.+..+..+... + ..+.+ .+..|++++.|+.|..+|..+++.....
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 557777788899999999999999887543221 0 11222 3567888999999999999998864333
Q ss_pred ecc-CcccEEEEEEeC--CCCcEEEEEc-----CCCcEEEEECCCCceeeEEeccC------------------------
Q 009059 344 FTG-HSTTVMSLDFHP--SKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQS------------------------ 391 (545)
Q Consensus 344 ~~~-h~~~V~~l~~~p--~~~~ll~s~s-----~dg~I~lwd~~~~~~~~~~~~~~------------------------ 391 (545)
-.. +......+...| .+..+++..+ .+|.|+.||..+++.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY 227 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence 222 111111111111 1234443322 36899999999999988775310
Q ss_pred --------CeeEEEEeCCCCEEEEEECCCe-------------------EEEEECCCCEEEEEecC--CC-------CCE
Q 009059 392 --------GATQMRFQPRLGRILAAAIENY-------------------ISILDVETQVCRLKLQG--HK-------NQV 435 (545)
Q Consensus 392 --------~v~~l~~sp~~~~l~~~~~dg~-------------------I~i~d~~~~~~~~~~~~--h~-------~~I 435 (545)
....+.++++.+.++++..++. |..+|.++++.+..++. |. ..+
T Consensus 228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~ 307 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM 307 (689)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence 0125788998899988887763 99999999999887764 22 122
Q ss_pred EEEEEcCCCC---EEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC-----------------------------------
Q 009059 436 HSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG----------------------------------- 476 (545)
Q Consensus 436 ~~l~~sp~g~---~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~----------------------------------- 476 (545)
.......+|+ +|+.++ +|.++++|..+++. +.......
T Consensus 308 ~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~ 384 (689)
T 1yiq_A 308 ILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL---LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPA 384 (689)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSC
T ss_pred EEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE---eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCC
Confidence 2223223564 677777 89999999998843 32111100
Q ss_pred ----CceEEEEEcCCCCEEEEEEc---------------------------------------------CCeEEEEeCCC
Q 009059 477 ----NKFHSCVFHPTFPSLLVIGC---------------------------------------------YETLELWNMTE 507 (545)
Q Consensus 477 ----~~v~~~~~sp~~~~l~~~~~---------------------------------------------dg~I~iwd~~~ 507 (545)
.....++|+|+...+++... ++.|+.||+.+
T Consensus 385 ~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t 464 (689)
T 1yiq_A 385 FWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK 464 (689)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred cccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC
Confidence 00112678888887776532 36799999999
Q ss_pred CeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 508 NKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 508 ~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++.+ .+. +...+..-.+...+.+|++++.||.|+.||
T Consensus 465 G~~~W~~~-~~~~~~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 465 QQAAWEVP-YVTIFNGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp TEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCeEeEcc-CCCCccCccceECCCEEEEECCCCcEEEEE
Confidence 9988 443 333344446667788999999999999986
No 228
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.29 E-value=5.5e-11 Score=119.57 Aligned_cols=170 Identities=11% Similarity=0.058 Sum_probs=130.5
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc-----------eeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEE
Q 009059 350 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 418 (545)
Q Consensus 350 ~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~-----------~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d 418 (545)
.++.+++++... ++++|+.+ .+++|++...+ ......... +..++| ++..|+++ .++.|++||
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999865 45566666 57779865332 223445566 999999 77888888 889999999
Q ss_pred CCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC
Q 009059 419 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 497 (545)
Q Consensus 419 ~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d 497 (545)
+.+.........|...+.++.+.+.. ++++. ||.|.+||+..+.. .. +...|.+++|+|+| ++++..|
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~---~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKST---KQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCE---EE----EEESEEEEEECSSE--EEEEETT
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcc---cc----ccCCceEEEEcCCc--eEEEEcC
Confidence 98765555566677889988887653 55555 99999999987632 22 34579999999999 7889999
Q ss_pred CeEEEEeCCCCeE--E-Ee------c---cCCCCeeEEEEeCCCCEEEEEe
Q 009059 498 ETLELWNMTENKT--L-TL------S---AHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 498 g~I~iwd~~~~~~--~-~~------~---~h~~~V~~l~~spd~~~las~s 536 (545)
|.+++|+....+. . ++ . +|...|.+|.|.+++.+|++-+
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999999988774 3 44 2 4788999999999999888744
No 229
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.29 E-value=2.6e-09 Score=107.74 Aligned_cols=254 Identities=9% Similarity=0.046 Sum_probs=163.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccC---------CccEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEe
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEH---------TQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 344 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h---------~~~V~-~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~ 344 (545)
+..|++++.++.|..||.++++.+...... ...+. .+.. ++..+++++.++.|..+|..+++. +..+
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~-~W~~ 129 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTV-AWQT 129 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCE-EEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCE-EEEE
Confidence 557778888899999999999988666542 12232 2222 456788888999999999998876 3333
Q ss_pred ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCee------EEEEeCCCCEEEEEECCCeEEEEE
Q 009059 345 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT------QMRFQPRLGRILAAAIENYISILD 418 (545)
Q Consensus 345 ~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~------~l~~sp~~~~l~~~~~dg~I~i~d 418 (545)
............. + . .++.++.++.|..+|..+++.+..+.....+. ..... ++.+++++.++.|..+|
T Consensus 130 ~~~~~~~~~p~~~-~-~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 130 KVAGEALSRPVVS-D-G-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp ECSSCCCSCCEEE-T-T-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred eCCCceEcCCEEE-C-C-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence 3222211122222 2 3 45577789999999999999988877544331 22222 46788888899999999
Q ss_pred CCCCEEEEEecCCCCC----EE---EEEEcC--CCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC
Q 009059 419 VETQVCRLKLQGHKNQ----VH---SVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 488 (545)
Q Consensus 419 ~~~~~~~~~~~~h~~~----I~---~l~~sp--~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~ 488 (545)
..+++.+......... +. .+...| .+..++.++ ++.+..+|..++ +.+.... ......+.. ++
T Consensus 205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG---~~~w~~~--~~~~~~~~~--~~ 277 (376)
T 3q7m_A 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG---QIMWKRE--LGSVNDFIV--DG 277 (376)
T ss_dssp TTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC---CEEEEEC--CCCEEEEEE--ET
T ss_pred CCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC---cEEeecc--CCCCCCceE--EC
Confidence 9999888766532110 00 011111 244556666 889999999887 3343333 223444444 35
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEE-Eec-cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 489 PSLLVIGCYETLELWNMTENKTL-TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 489 ~~l~~~~~dg~I~iwd~~~~~~~-~~~-~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
..+++++.++.|..+|..+++.+ ... .....+...... +..|+.++.+|.|.+||
T Consensus 278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEE
Confidence 67889999999999999999887 333 122233333332 56788888888888774
No 230
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.28 E-value=2e-09 Score=108.57 Aligned_cols=223 Identities=11% Similarity=0.061 Sum_probs=156.5
Q ss_pred EEc--CCCCEEEEE-eCCCcEEEEEcCCC----eEEEEec------c-CCccEEEEEEcCCCCEEEEEeCC------CeE
Q 009059 270 HFS--PDGKLLATG-GHDKKAVLWCTESF----TVKSTLE------E-HTQWITDVRFSPSLSRLATSSAD------RTV 329 (545)
Q Consensus 270 ~~s--pdg~~latg-~~dg~I~lwd~~~~----~~~~~l~------~-h~~~V~~l~~sp~~~~l~t~s~d------g~I 329 (545)
.++ +++++|++. ..++.|.|+|+.+. +...+++ . ....-..+...|+| +++++..+ |.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 346 788877665 46789999999765 6666663 1 12245678889999 77776555 789
Q ss_pred EEEECCCCCeeeeEeccCc---ccEEEEEEeCCCCcEEEEEc-------------------CCCcEEEEECCCCceeeEE
Q 009059 330 RVWDTENPDYSLRTFTGHS---TTVMSLDFHPSKEDLLCSCD-------------------NNSEIRYWSINNGSCAGVF 387 (545)
Q Consensus 330 ~vwd~~~~~~~~~~~~~h~---~~V~~l~~~p~~~~ll~s~s-------------------~dg~I~lwd~~~~~~~~~~ 387 (545)
.++|..+.+. +..+.... ..-+.+-|+|+++.++ +.. .+..|.+||+.+++.+.++
T Consensus 167 ~vlD~~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 167 LMLDHYSFEP-LGKWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp EEECTTTCCE-EEECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred EEEECCCCeE-EEEEccCCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 9999998775 55554221 2244678899987555 543 3689999999999888888
Q ss_pred ecc---CCeeEEEE--eCCCCEEEEEEC------CCeEEEEECCCCEE--EEE--ecCC----------------CCCEE
Q 009059 388 KCQ---SGATQMRF--QPRLGRILAAAI------ENYISILDVETQVC--RLK--LQGH----------------KNQVH 436 (545)
Q Consensus 388 ~~~---~~v~~l~~--sp~~~~l~~~~~------dg~I~i~d~~~~~~--~~~--~~~h----------------~~~I~ 436 (545)
... .....+.| +|++.++++++. ++.|.+|....+.. ... +... ...+.
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 764 23556666 999998888774 56887766554421 111 1110 24578
Q ss_pred EEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCC--------------ceEEEEEcCCCCEEEEEE
Q 009059 437 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGN--------------KFHSCVFHPTFPSLLVIG 495 (545)
Q Consensus 437 ~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~--------------~v~~~~~sp~~~~l~~~~ 495 (545)
.|.+++||++|.++. .+.|.+||+......+.+..+...+. ....+.++|+|++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 899999999999988 67999999975544456655554321 358899999999999998
No 231
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.25 E-value=2.9e-10 Score=112.20 Aligned_cols=259 Identities=10% Similarity=0.003 Sum_probs=170.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
..+.++.+.+++.+ ..++.+ |..||. +++.+..+...........+. +..|+.++.++.|..+|.. +.. ...
T Consensus 60 ~~~~~~~~~~~g~l-~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~-~~~ 131 (330)
T 3hxj_A 60 IIECRPSIGKDGTI-YFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE-KWR 131 (330)
T ss_dssp EEEECCEETTTTEE-CCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCE-EEE
T ss_pred CcccceEEecCCcE-EEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE-EEE
Confidence 34567777777754 444444 888885 555554443333223333333 5568888889999999988 554 444
Q ss_pred eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC-CeeEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 009059 344 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQ 422 (545)
Q Consensus 344 ~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~ 422 (545)
+..+...+.++...+++. ++ .++.++.|..||.. ++....+.... .+..+.+.+++. +++++ +.|..|| .++
T Consensus 132 ~~~~~~~~~~~~~~~~g~-l~-vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g 204 (330)
T 3hxj_A 132 FKTKKAIYATPIVSEDGT-IY-VGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDG 204 (330)
T ss_dssp EECSSCCCSCCEECTTSC-EE-EECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTS
T ss_pred EcCCCceeeeeEEcCCCE-EE-EEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCC
Confidence 444445566666666654 44 56778999999998 77776665433 355666766644 55555 8899999 777
Q ss_pred EEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE
Q 009059 423 VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 502 (545)
Q Consensus 423 ~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i 502 (545)
+.+..+......+.++...++|.+.+...++.|..+|. ++ ..+..+......+..+.+.+++. |++++.++.|..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~ 279 (330)
T 3hxj_A 205 TEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DG---TEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYA 279 (330)
T ss_dssp CEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TS---CEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEE
T ss_pred cEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CC---CEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEE
Confidence 77777766667788889988888777666788888874 33 33444444444444556665664 888888889999
Q ss_pred EeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 503 WNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 503 wd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
+|. +++.+ .+......+.++...+++. |..++.+|.+++.
T Consensus 280 ~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 280 INP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYAL 320 (330)
T ss_dssp ECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred ECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence 996 55554 4444456677788777776 5568889988764
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.22 E-value=3.2e-09 Score=115.98 Aligned_cols=256 Identities=11% Similarity=0.061 Sum_probs=164.2
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccC--CccEEEEEEcC---CCCEEEEEe------CCCeEEEEECCCCCeeeeE
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSP---SLSRLATSS------ADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h--~~~V~~l~~sp---~~~~l~t~s------~dg~I~vwd~~~~~~~~~~ 343 (545)
+..|++++.|+.|+.+|.++|+.+..+... ......+..+| ++ .+++++ .+|.|..||..+++...+.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 557888889999999999999998776532 11111111122 44 444443 3789999999998863332
Q ss_pred ecc-C-----------------------------cccEEEEEEeCCCCcEEEEEcCCC-------------------cEE
Q 009059 344 FTG-H-----------------------------STTVMSLDFHPSKEDLLCSCDNNS-------------------EIR 374 (545)
Q Consensus 344 ~~~-h-----------------------------~~~V~~l~~~p~~~~ll~s~s~dg-------------------~I~ 374 (545)
... + ......+++.|+.. +++.+..++ .|.
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 210 0 00112567888754 555666665 399
Q ss_pred EEECCCCceeeEEeccC----------CeeEEEEeCCCC---EEEEEECCCeEEEEECCCCEEEEEecCCC-CC------
Q 009059 375 YWSINNGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK-NQ------ 434 (545)
Q Consensus 375 lwd~~~~~~~~~~~~~~----------~v~~l~~sp~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-~~------ 434 (545)
.||..+++.+..+.... ......+..++. .++.++.+|.++++|.++++.+....... ..
T Consensus 279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~ 358 (689)
T 1yiq_A 279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM 358 (689)
T ss_dssp EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence 99999999998876421 112222223443 57788889999999999998874432111 00
Q ss_pred --------------------------------EEEEEEcCCCCEEEEEe-------------------------------
Q 009059 435 --------------------------------VHSVCWNTSGEYLASVS------------------------------- 451 (545)
Q Consensus 435 --------------------------------I~~l~~sp~g~~l~s~s------------------------------- 451 (545)
-..++++|+..+|++..
T Consensus 359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 438 (689)
T 1yiq_A 359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGM 438 (689)
T ss_dssp TTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECC
T ss_pred cCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccc
Confidence 11267888887777652
Q ss_pred ---------------CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Eecc
Q 009059 452 ---------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA 515 (545)
Q Consensus 452 ---------------dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~ 515 (545)
++.|+.||+.++ +.+-.+..+. .+....+...+..+++++.|+.|+.||.++++.+ .+..
T Consensus 439 ~p~~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 439 MPEGAEGLLEMAKSWSGKLIAWDPVKQ---QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp CCSSHHHHHHHHTTCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cCcccccCCCCCCCcceeEEEEECCCC---CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 256999999888 4555554433 2333455667778999999999999999999998 4443
Q ss_pred -CCCCeeEEEEeCCCC-EEEEEe
Q 009059 516 -HDKLVSSLAASTVNG-MVASAS 536 (545)
Q Consensus 516 -h~~~V~~l~~spd~~-~las~s 536 (545)
+.....-+.|..+|+ |+++.+
T Consensus 515 ~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 515 ASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp SSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCcccCceEEEECCEEEEEEEe
Confidence 322234467778887 555443
No 233
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.22 E-value=1.4e-09 Score=118.56 Aligned_cols=253 Identities=10% Similarity=0.040 Sum_probs=167.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccC-C----ccEEE-EEEcCCCCEEEEEeC------CCeEEEEECCCCCeee
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH-T----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSL 341 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h-~----~~V~~-l~~sp~~~~l~t~s~------dg~I~vwd~~~~~~~~ 341 (545)
++..|++++.|+.|..+|..+|+.+..+..+ . ..+.. ... .+..+++++. ++.|+.||..+++...
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 3567888889999999999999999887654 1 11111 111 2345555543 7999999999988633
Q ss_pred eEeccCc-------------------------------ccEEEEEEeCCCCcEEEEEcCCC-------------------
Q 009059 342 RTFTGHS-------------------------------TTVMSLDFHPSKEDLLCSCDNNS------------------- 371 (545)
Q Consensus 342 ~~~~~h~-------------------------------~~V~~l~~~p~~~~ll~s~s~dg------------------- 371 (545)
+...... .....++++|++..++ .+..++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy-~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMY-VGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEE-EECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEE-EECCCCccccCCCCCccCCCCeeeE
Confidence 3221110 0112567888865544 554443
Q ss_pred cEEEEECCCCceeeEEeccC----------CeeEEEEeCCC---CEEEEEECCCeEEEEECCCCEEEEEecCCCC-----
Q 009059 372 EIRYWSINNGSCAGVFKCQS----------GATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHKN----- 433 (545)
Q Consensus 372 ~I~lwd~~~~~~~~~~~~~~----------~v~~l~~sp~~---~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~----- 433 (545)
.|..+|..+++.+..+.... ....+....+| ..+++++.+|.|+++|.++++.+..+.....
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 59999999999998876421 12233333466 5678888899999999999998876642210
Q ss_pred ------CE------------------------EEEEEcCCCCEEEEEe-C------------------------------
Q 009059 434 ------QV------------------------HSVCWNTSGEYLASVS-D------------------------------ 452 (545)
Q Consensus 434 ------~I------------------------~~l~~sp~g~~l~s~s-d------------------------------ 452 (545)
.+ ..++++|++.++++.. +
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 11 1467889888877753 2
Q ss_pred -------------CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Eec-cCC
Q 009059 453 -------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHD 517 (545)
Q Consensus 453 -------------g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~-~h~ 517 (545)
+.|..||+.++ +.+-.+.. ...+....+...+..+++++.++.+++||..+++.+ .+. ++.
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 519 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQ---KAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG 519 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTT---EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cccccccCCCCCccEEEEEeCCCC---cEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC
Confidence 67999999887 44444442 334445556677888899999999999999999998 443 333
Q ss_pred CCeeEEEEeCCCCEEE
Q 009059 518 KLVSSLAASTVNGMVA 533 (545)
Q Consensus 518 ~~V~~l~~spd~~~la 533 (545)
....-+.+..+|+.++
T Consensus 520 ~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 520 VVAAPSTYMVDGRQYV 535 (677)
T ss_dssp CCSCCEEEEETTEEEE
T ss_pred cccCCEEEEeCCEEEE
Confidence 3334456677887443
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.18 E-value=3.6e-10 Score=111.47 Aligned_cols=256 Identities=11% Similarity=0.059 Sum_probs=168.3
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCc
Q 009059 269 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 348 (545)
Q Consensus 269 l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~ 348 (545)
..+..++ .|..++.++.|..|| .+++.......+...+.++...+++. |+.++.+ |..||. +++. +..+....
T Consensus 25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~-~~~~~~~~ 97 (330)
T 3hxj_A 25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTE-KWRFDTKK 97 (330)
T ss_dssp CEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGG-GGGSCC--
T ss_pred ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcE-EEEEECCC
Confidence 4444555 455667788999999 88888777665556667788877665 5555444 888886 3432 33332222
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC-eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEE
Q 009059 349 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 427 (545)
Q Consensus 349 ~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~ 427 (545)
.......+. + .. ++.++.++.|..+|.. ++.......... +..+...++ +.+++++.++.|..||.. ++.+..
T Consensus 98 ~~~~~~~~~-~-~~-l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~-g~l~vgt~~~~l~~~d~~-g~~~~~ 171 (330)
T 3hxj_A 98 AIVSDFTIF-E-DI-LYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSED-GTIYVGSNDNYLYAINPD-GTEKWR 171 (330)
T ss_dssp ---CCEEEE-T-TE-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTT-SCEEEECTTSEEEEECTT-SCEEEE
T ss_pred CcccCceEE-C-CE-EEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCC-CEEEEEcCCCEEEEECCC-CCEeEE
Confidence 222233333 3 33 4467778999999998 777666654433 455566655 557778888999999999 877776
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 428 LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 428 ~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
+......+.++...+++.++++. +.|..|| .++ ..+.........+.++.+.+++. |++++.++.|..+|...
T Consensus 172 ~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g---~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g 244 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDG---TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG 244 (330)
T ss_dssp EECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTS---CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS
T ss_pred EecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCC---cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC
Confidence 66556677788888888866655 8899999 555 44445554556678888888875 77788888999998644
Q ss_pred CeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 508 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 508 ~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.....+......+..+.+.+++ .|..++.+|.|..+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 245 TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEEC
Confidence 4443444444445556665555 456677777777664
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.18 E-value=1.5e-09 Score=113.31 Aligned_cols=257 Identities=10% Similarity=0.029 Sum_probs=176.8
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEecc---------------------------------C------CccEEEEEEcC---
Q 009059 278 LATGGHDKKAVLWCTESFTVKSTLEE---------------------------------H------TQWITDVRFSP--- 315 (545)
Q Consensus 278 latg~~dg~I~lwd~~~~~~~~~l~~---------------------------------h------~~~V~~l~~sp--- 315 (545)
+.+|+..|.|+|+-+.+++.+..+.- + .+....+..|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 56788889999998888777765420 0 11122344554
Q ss_pred --CCCEEEEEeC-CCeEEEEECCCCCeeeeEec-cCcccEEEEEE-e-CCCCcEEEEE-----------------cCCCc
Q 009059 316 --SLSRLATSSA-DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDF-H-PSKEDLLCSC-----------------DNNSE 372 (545)
Q Consensus 316 --~~~~l~t~s~-dg~I~vwd~~~~~~~~~~~~-~h~~~V~~l~~-~-p~~~~ll~s~-----------------s~dg~ 372 (545)
||++|+.... +..|.+.|+.+.+. ...+. .....+..+++ . |+++++++++ -.++.
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~-~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKC-DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEE-EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceE-eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 7888877765 55799999998764 44222 12345778887 4 8988887664 33568
Q ss_pred EEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCC--------------------------------------eE
Q 009059 373 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN--------------------------------------YI 414 (545)
Q Consensus 373 I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg--------------------------------------~I 414 (545)
+.++|..+.+.+..+........++++|+++++++.+.+. .|
T Consensus 177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 9999999999999888766778899999999999888543 36
Q ss_pred EEEECCC--CEE-EEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCC--------CcceEEEEeeCCCceEE
Q 009059 415 SILDVET--QVC-RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS--------KGECIHELSCTGNKFHS 481 (545)
Q Consensus 415 ~i~d~~~--~~~-~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~--------~~~~i~~~~~~~~~v~~ 481 (545)
.+.|.++ ++. +..+.. .....++.++|||++++++. +++|.++|+.+.. ....+.....-+.....
T Consensus 257 ~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h 335 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH 335 (595)
T ss_dssp EEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEE
T ss_pred EEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcce
Confidence 7777776 433 333332 23567899999999999988 7799999998541 01122222234566889
Q ss_pred EEEcCCCCEEEE-EEcCCeEEEEeCCC----------CeEE-EeccCCCC-----eeEEEEeCCCCEEEEEeC
Q 009059 482 CVFHPTFPSLLV-IGCYETLELWNMTE----------NKTL-TLSAHDKL-----VSSLAASTVNGMVASASH 537 (545)
Q Consensus 482 ~~~sp~~~~l~~-~~~dg~I~iwd~~~----------~~~~-~~~~h~~~-----V~~l~~spd~~~las~s~ 537 (545)
++|+++| ++++ .-.++.|.+||+.. ...+ .+..|-.+ -.++.++|||++|+++..
T Consensus 336 ~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 336 TAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 9999999 5554 44577999999976 4444 44444332 123356899999998763
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.18 E-value=1.6e-08 Score=102.11 Aligned_cols=219 Identities=9% Similarity=-0.000 Sum_probs=147.8
Q ss_pred CCCCEEEEE-eCCCeEEEEECCCC-C--eeeeEec------c-CcccEEEEEEeCCCCcEEEEEcCC------CcEEEEE
Q 009059 315 PSLSRLATS-SADRTVRVWDTENP-D--YSLRTFT------G-HSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWS 377 (545)
Q Consensus 315 p~~~~l~t~-s~dg~I~vwd~~~~-~--~~~~~~~------~-h~~~V~~l~~~p~~~~ll~s~s~d------g~I~lwd 377 (545)
.++++|+.. -.++.|.|+|+.+. . ...+++. . .......+.+.|++ +++++..+ |.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 777777654 55789999999643 1 1233331 0 11245567788997 55565444 7899999
Q ss_pred CCCCceeeEEeccCC----eeEEEEeCCCCEEEEEE-------------------CCCeEEEEECCCCEEEEEecCCC--
Q 009059 378 INNGSCAGVFKCQSG----ATQMRFQPRLGRILAAA-------------------IENYISILDVETQVCRLKLQGHK-- 432 (545)
Q Consensus 378 ~~~~~~~~~~~~~~~----v~~l~~sp~~~~l~~~~-------------------~dg~I~i~d~~~~~~~~~~~~h~-- 432 (545)
..+.+.+..+..... ...+.|+|+++.+++.. ....|.+||+.+++.+.++....
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 999999998874422 34588899989777774 36899999999998888776521
Q ss_pred CCEEEEEE--cCCCCEEEEEeC-------CcEEEEEcCCCCCcceEEEE--eeC----------------CCceEEEEEc
Q 009059 433 NQVHSVCW--NTSGEYLASVSD-------ELVRVWSIGSGSKGECIHEL--SCT----------------GNKFHSCVFH 485 (545)
Q Consensus 433 ~~I~~l~~--sp~g~~l~s~sd-------g~I~vwd~~~~~~~~~i~~~--~~~----------------~~~v~~~~~s 485 (545)
.....+.| +|++++++++.. +.|.+|....+. ......+ ... ......+.++
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 23455655 999998777654 477777665431 2222222 110 2456788999
Q ss_pred CCCCEEEEEEcC-CeEEEEeCCC---CeEE-Eec-c-C------------CCCeeEEEEeCCCCEEEEEe
Q 009059 486 PTFPSLLVIGCY-ETLELWNMTE---NKTL-TLS-A-H------------DKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 486 p~~~~l~~~~~d-g~I~iwd~~~---~~~~-~~~-~-h------------~~~V~~l~~spd~~~las~s 536 (545)
+|+++|+++... +.|.+||+.. .+.+ .+. + . .+....++++|||++|+++.
T Consensus 330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999988874 5999999853 2333 221 1 1 01368899999999999887
No 237
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.17 E-value=8e-10 Score=110.28 Aligned_cols=220 Identities=9% Similarity=0.034 Sum_probs=150.0
Q ss_pred ccEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCeeeeEe-------ccCcccEEEEEEeCCCCcEEEEEcC-----CC
Q 009059 306 QWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTF-------TGHSTTVMSLDFHPSKEDLLCSCDN-----NS 371 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~--dg~I~vwd~~~~~~~~~~~-------~~h~~~V~~l~~~p~~~~ll~s~s~-----dg 371 (545)
..+..|+++++++++++... ++.++||.+.++. +..+ ..+-..+..+++++++. |+++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG--LIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE--EEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC--eecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCC
Confidence 67899999999999888642 3435666655333 3322 23456899999999864 5544322 57
Q ss_pred cEEEEECCCCceeeEEecc-------CCeeEEEEeCCCCEEEEEE----CCCeEEEEECCCCEEEEEecCCCCCEE-EEE
Q 009059 372 EIRYWSINNGSCAGVFKCQ-------SGATQMRFQPRLGRILAAA----IENYISILDVETQVCRLKLQGHKNQVH-SVC 439 (545)
Q Consensus 372 ~I~lwd~~~~~~~~~~~~~-------~~v~~l~~sp~~~~l~~~~----~dg~I~i~d~~~~~~~~~~~~h~~~I~-~l~ 439 (545)
.|.+||+.+++.+..+... ..+..++++++++.++++. .++.|.+||+.+++....+.+|..... ...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 8999999999887777643 2358899998767766655 478999999998887776665432110 133
Q ss_pred EcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC-eEEEEeCC---CCe-----
Q 009059 440 WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMT---ENK----- 509 (545)
Q Consensus 440 ~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-~I~iwd~~---~~~----- 509 (545)
+.++|..+.+.. ++.++.|. ..+..++|+|+++.|+++...+ .|+.++.. .+.
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~-----------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~ 236 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPH-----------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE 236 (343)
T ss_dssp CEETTEECBEECTTSCEECCC-----------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred eeECCEEEEeccCCCceecee-----------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence 344666666555 66665553 2356799999999999988776 66666532 111
Q ss_pred ---EEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 510 ---TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 510 ---~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+...++......++++++|.++++...++.|.+||
T Consensus 237 ~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 237 LGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp HHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred hhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence 012223445677899999999998888889999985
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.13 E-value=4.4e-09 Score=109.74 Aligned_cols=234 Identities=12% Similarity=0.105 Sum_probs=168.0
Q ss_pred CCCEEEEEeC-CCcEEEEEcCCCeEEEEeccC-CccEEEEEE-c-CCCCEEEEEe------------------CCCeEEE
Q 009059 274 DGKLLATGGH-DKKAVLWCTESFTVKSTLEEH-TQWITDVRF-S-PSLSRLATSS------------------ADRTVRV 331 (545)
Q Consensus 274 dg~~latg~~-dg~I~lwd~~~~~~~~~l~~h-~~~V~~l~~-s-p~~~~l~t~s------------------~dg~I~v 331 (545)
||++|+.... ++.|.+.|+.+++....+.-. ...+..+++ . |+++++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 8888877665 457999999999988855322 245788998 5 8999999885 2468999
Q ss_pred EECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC-------------------------------------CcEE
Q 009059 332 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------------------------------------SEIR 374 (545)
Q Consensus 332 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d-------------------------------------g~I~ 374 (545)
+|.++.+. ...+.-- +....++++|+++.+++++... +.|.
T Consensus 180 ID~~t~~v-~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 180 VDADKWEV-AWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EETTTTEE-EEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EECCCCeE-EEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99998765 3333311 1456778899988888766433 2477
Q ss_pred EEECCC--Cce-eeEEeccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCE------------EEEEecCCCCCEEEE
Q 009059 375 YWSINN--GSC-AGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQV------------CRLKLQGHKNQVHSV 438 (545)
Q Consensus 375 lwd~~~--~~~-~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~------------~~~~~~~h~~~I~~l 438 (545)
+.|..+ ++. +..+.......++.++|+|+++++++. ++.|.++|+.+.+ .+..+. -......+
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~ 336 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT 336 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEE
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceE
Confidence 888887 545 567777778889999999999888775 7899999999653 334443 34567899
Q ss_pred EEcCCCCEEEEEe--CCcEEEEEcCCC-------CCcceEEEEeeCCCceEE-----EEEcCCCCEEEEEEcCC--eE--
Q 009059 439 CWNTSGEYLASVS--DELVRVWSIGSG-------SKGECIHELSCTGNKFHS-----CVFHPTFPSLLVIGCYE--TL-- 500 (545)
Q Consensus 439 ~~sp~g~~l~s~s--dg~I~vwd~~~~-------~~~~~i~~~~~~~~~v~~-----~~~sp~~~~l~~~~~dg--~I-- 500 (545)
+|+++| ++.+.. |+.|.+||+... +....+..+..+..+-.. +.++|||++|++...-. .+
T Consensus 337 aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 337 AFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp EECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred EECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence 999999 665555 999999999762 113567777766554321 24589999999887533 34
Q ss_pred ---------EEEeCCCCeEE
Q 009059 501 ---------ELWNMTENKTL 511 (545)
Q Consensus 501 ---------~iwd~~~~~~~ 511 (545)
.++|+.+++..
T Consensus 416 ~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp CCSSCCEEEEEEECSSSSCE
T ss_pred CCCCCCCcceEEEcCCCcEE
Confidence 88999766543
No 239
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.08 E-value=7.1e-08 Score=91.51 Aligned_cols=204 Identities=11% Similarity=0.024 Sum_probs=143.5
Q ss_pred eEEEEeccCCc--cEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCeeeeEec-cCcccEEEEEEeCCCCcEEEEEcCC
Q 009059 296 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNN 370 (545)
Q Consensus 296 ~~~~~l~~h~~--~V~~l~~sp~~~~l~t~s~--dg~I~vwd~~~~~~~~~~~~-~h~~~V~~l~~~p~~~~ll~s~s~d 370 (545)
+.+.++. |.. ....++|++++.++++.+. ++.|+++|+.+++. +..+. +.......+++. ++.++++.-.+
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v-~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV-ENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE-EEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE-EEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 4455553 443 3689999998644444433 57999999999886 44433 222233455555 45777777788
Q ss_pred CcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCC-----CCEEEEEEcCCCC
Q 009059 371 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGE 445 (545)
Q Consensus 371 g~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-----~~I~~l~~sp~g~ 445 (545)
+.+.++|..+.+.+..+... ......++++++.++++..++.|.++|..+.+.+..+.-.. ..++.+.|. +|.
T Consensus 86 ~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ 163 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE 163 (266)
T ss_dssp SEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred CEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence 99999999999999988765 12234466688888888788999999999988777765321 246788888 676
Q ss_pred EEEEEe-CCcEEEEEcCCCCCcceEEEEeeC-------------CCceEEEEEcCCCCEEEEEE-cCCeEEEEeCCCC
Q 009059 446 YLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKFHSCVFHPTFPSLLVIG-CYETLELWNMTEN 508 (545)
Q Consensus 446 ~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~-------------~~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~ 508 (545)
+++... ++.|.+.|..++ +.+..+... ......++|+|+++.+++++ ..+.|++.++...
T Consensus 164 lyvn~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 555554 779999999988 555555432 13568999999998777666 4568888887544
No 240
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.08 E-value=2.2e-07 Score=88.75 Aligned_cols=222 Identities=7% Similarity=0.010 Sum_probs=142.3
Q ss_pred CEEEEEeCCCeEEEEECCCCCee----eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CC
Q 009059 318 SRLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SG 392 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~----~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~ 392 (545)
.+|+.+.. +.|+.+++...... ...+......+..++|++++..++++...++.|..+++........+... ..
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34555543 47888888754321 11122123457899999987788878777889999999866543333322 46
Q ss_pred eeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-C---CcEEEEEcCCCCCcc
Q 009059 393 ATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGE 467 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-d---g~I~vwd~~~~~~~~ 467 (545)
...++++++++.++++.. .+.|.++++..................++++|++..|+.+. . +.|.++++..... .
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E
Confidence 889999998777777665 67999999875432222322235678999999766555554 3 4788888764321 1
Q ss_pred eEEEEeeCCCceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEe-CCCcEEEcC
Q 009059 468 CIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 545 (545)
Q Consensus 468 ~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s-~Dg~I~iWd 545 (545)
.+ ..........+++++++..|+++... +.|.++|+.+.....+.........+++. +..|+.+. ..+.|.++|
T Consensus 160 ~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 160 IL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp EE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEe
Confidence 11 11223467899999988878777665 59999999876554333233445667654 45555554 456776653
No 241
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.06 E-value=9.4e-11 Score=118.36 Aligned_cols=201 Identities=9% Similarity=-0.020 Sum_probs=109.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC--e
Q 009059 316 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--A 393 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~--v 393 (545)
++..+++++.||.|+.||..+++. +..+.. +.+.+..+..++ .++++++.||.|+.||..+++.+..+..... +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~-~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI-KWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE-EEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE-EEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 577899999999999999999886 444543 445544455554 3555778899999999998887665542211 1
Q ss_pred e-EEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEE
Q 009059 394 T-QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 394 ~-~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~ 471 (545)
. ...+. .++.+++++.++.|+.||.++++.+..+..+. ...++|++..|++++ |+.|+.||.++++......
T Consensus 84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~- 157 (369)
T 2hz6_A 84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT- 157 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE-
T ss_pred ccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe-
Confidence 0 11111 34678888889999999999999888776543 234566777888777 8999999999885422221
Q ss_pred EeeCCCceEEEEEcCCC---CEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeE-EEEeCCCC
Q 009059 472 LSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSS-LAASTVNG 530 (545)
Q Consensus 472 ~~~~~~~v~~~~~sp~~---~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~-l~~spd~~ 530 (545)
... .....+..+. ..+++++.++.|+.||..+++.+-......++.. ..+++++.
T Consensus 158 ~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 158 YFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp EEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred ccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 111 1122333332 4588899999999999999988732234445443 34455553
No 242
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.06 E-value=3.5e-08 Score=107.39 Aligned_cols=262 Identities=13% Similarity=0.098 Sum_probs=169.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCcc----------E-EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~----------V-~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
+..|++++.++.|.-+|..+|+.+..+...... + ..+++ .+..|++++.|+.|..+|..+++...+.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 456777778899999999999999877533211 0 11222 3557888889999999999998863332
Q ss_pred eccCc---ccEE-EEEEeCCCCcEEEEEcC------CCcEEEEECCCCceeeEEeccC--C-------------------
Q 009059 344 FTGHS---TTVM-SLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQS--G------------------- 392 (545)
Q Consensus 344 ~~~h~---~~V~-~l~~~p~~~~ll~s~s~------dg~I~lwd~~~~~~~~~~~~~~--~------------------- 392 (545)
-.... ..+. ...+. +..++ .+.. +|.|+.+|..+++.+..+.... .
T Consensus 144 ~~~~~~~~~~~~~~P~v~--~~~v~-vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV--KGKVI-IGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE--TTEEE-ECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred ccCCCCCcceecCCCEEE--CCEEE-EeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 22111 1111 11111 23444 4432 5899999999999998776311 0
Q ss_pred -----------eeEEEEeCCCCEEEEEECCC-------------------eEEEEECCCCEEEEEecC--CC-------C
Q 009059 393 -----------ATQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK-------N 433 (545)
Q Consensus 393 -----------v~~l~~sp~~~~l~~~~~dg-------------------~I~i~d~~~~~~~~~~~~--h~-------~ 433 (545)
...+++.++.+.++++..++ .|..+|.++++.+..++. |. .
T Consensus 221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~ 300 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ 300 (668)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence 12468888888888887765 499999999999887764 22 2
Q ss_pred CEEEEEEcCCCC---EEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC------------Cc-------------------
Q 009059 434 QVHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG------------NK------------------- 478 (545)
Q Consensus 434 ~I~~l~~sp~g~---~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~------------~~------------------- 478 (545)
++....+..+|+ +|+.++ +|.++++|..+++ .+....... .+
T Consensus 301 ~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~ 377 (668)
T 1kv9_A 301 QITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK---LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP 377 (668)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred CcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC---EeccccccccccccccccccCCccccccccccCCeeEECCCC
Confidence 333333334665 577777 8999999999884 332211110 00
Q ss_pred -----eEEEEEcCCCCEEEEEE------------------------------------cCCeEEEEeCCCCeEE-EeccC
Q 009059 479 -----FHSCVFHPTFPSLLVIG------------------------------------CYETLELWNMTENKTL-TLSAH 516 (545)
Q Consensus 479 -----v~~~~~sp~~~~l~~~~------------------------------------~dg~I~iwd~~~~~~~-~~~~h 516 (545)
-..++++|+...+++.. .++.|+.||+.+++.+ ... +
T Consensus 378 ~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~-~ 456 (668)
T 1kv9_A 378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP-Y 456 (668)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE-E
T ss_pred ccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc-C
Confidence 01257777766665421 2378999999999988 333 3
Q ss_pred CCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 517 DKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 517 ~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
...+....+...+.+|++++.||.|+.||
T Consensus 457 ~~~~~~~~~~t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 457 PTHWNGGTLSTAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp SSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCCCcCceeEeCCCEEEEECCcccchhhh
Confidence 33344445556788999999999999886
No 243
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.99 E-value=1.8e-06 Score=96.07 Aligned_cols=267 Identities=7% Similarity=0.092 Sum_probs=177.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc-------CCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~-------h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
+...|.++...+++.+.+ |+.++-|.+||..+++....... ....|.++...++|.+.+ |+.+ -|.+||.
T Consensus 213 ~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~ 289 (795)
T 4a2l_A 213 GTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHE 289 (795)
T ss_dssp -CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEET
T ss_pred CCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcC
Confidence 356799999888886555 44454589999887665443222 245699999988877544 4455 4888998
Q ss_pred CCCCeeeeEec--------cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-------ccCCeeEEEEe
Q 009059 335 ENPDYSLRTFT--------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------CQSGATQMRFQ 399 (545)
Q Consensus 335 ~~~~~~~~~~~--------~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-------~~~~v~~l~~s 399 (545)
.+... ..+. -....|.++...++|. +. .|..++-|..|+..+........ ....|.++...
T Consensus 290 ~~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d 365 (795)
T 4a2l_A 290 GTDSF--ASYSSNPVENGSLSQRSVRSIFMDSQGG-MW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED 365 (795)
T ss_dssp TTTEE--EEECCCTTSTTSCSSSCEEEEEECTTSC-EE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred CCCeE--EEEecCCCCCCCCCCCcEEEEEEeCCcC-EE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence 76543 2222 1235799999888764 33 56666779999876544322111 12347888888
Q ss_pred CCCCEEEEEECCCeEEEEECCCCEEEEEecC--------CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEE
Q 009059 400 PRLGRILAAAIENYISILDVETQVCRLKLQG--------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 400 p~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--------h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~ 470 (545)
++ +.|.+|+.++.|..||..++........ ....|.+++..++|.+|..|. ++-|.+||..++. +.
T Consensus 366 ~~-g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~----~~ 440 (795)
T 4a2l_A 366 KD-KNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ----VE 440 (795)
T ss_dssp TT-SCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC----EE
T ss_pred CC-CCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc----EE
Confidence 77 5577888888899999987754432211 235799999999999444455 6789999987752 22
Q ss_pred EEe-----eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEecc-------CCCCeeEEEEeCCCCEEEEEeCC
Q 009059 471 ELS-----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 471 ~~~-----~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~-------h~~~V~~l~~spd~~~las~s~D 538 (545)
.+. .....|.++...+++. |.+++. +.|.+||..+++...+.. ....|.++...+++.+.+... +
T Consensus 441 ~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~ 517 (795)
T 4a2l_A 441 NFNQRNSQLVNENVYAILPDGEGN-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E 517 (795)
T ss_dssp EECTTTSCCSCSCEEEEEECSSSC-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S
T ss_pred EeecCCCCcCCCeeEEEEECCCCC-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C
Confidence 222 1345789999988887 555665 569999998887664432 236789999998888666554 5
Q ss_pred CcEEEc
Q 009059 539 KCVKIW 544 (545)
Q Consensus 539 g~I~iW 544 (545)
| |..|
T Consensus 518 G-l~~~ 522 (795)
T 4a2l_A 518 G-LSVF 522 (795)
T ss_dssp C-EEEE
T ss_pred c-eEEE
Confidence 5 4444
No 244
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.99 E-value=2.7e-06 Score=94.61 Aligned_cols=265 Identities=7% Similarity=0.051 Sum_probs=179.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc-------CCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~-------h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
...|.++...++|.+.+ |+.+ -|.+|+..+++....... ....|.++...++|. |..|+.++-|.+|+..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 35699999999887554 4444 589999887765543221 235799999988876 5567777778999876
Q ss_pred CCCeeeeEecc-------CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe---------ccCCeeEEEEe
Q 009059 336 NPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------CQSGATQMRFQ 399 (545)
Q Consensus 336 ~~~~~~~~~~~-------h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~---------~~~~v~~l~~s 399 (545)
.... ..+.. ....|.++...+++. +. .|..++-|..||..++....... ....|.++...
T Consensus 339 ~~~~--~~~~~~~~~~~l~~~~V~~i~~d~~g~-lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d 414 (795)
T 4a2l_A 339 RNRF--KNIRNIPYKNSLSDNVVSCIVEDKDKN-LW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD 414 (795)
T ss_dssp GGSS--EEECCCTTSSSCSCSSEEEEEECTTSC-EE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred cccc--eEEcCCCCCCCCCCCeeEEEEECCCCC-EE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence 5432 22211 235699998887764 43 56667779999988766543221 12457888888
Q ss_pred CCCCEEEEEECCCeEEEEECCCCEEEEEec----CCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEe--
Q 009059 400 PRLGRILAAAIENYISILDVETQVCRLKLQ----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-- 473 (545)
Q Consensus 400 p~~~~l~~~~~dg~I~i~d~~~~~~~~~~~----~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~-- 473 (545)
+++..|.+++.++.|.+||..+++...... .....|.++...++|.+.++.. +-|.+||..++ . ...+.
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~---~-~~~~~~~ 489 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQR---S-FTTIEKE 489 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTT---E-EEECCBC
T ss_pred CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCC---e-EEEcccc
Confidence 886548888888889999998876544322 1345799999999998777665 55888998764 2 22221
Q ss_pred -----eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEec-------cCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 009059 474 -----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-------AHDKLVSSLAASTVNGMVASASHDKCV 541 (545)
Q Consensus 474 -----~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~-------~h~~~V~~l~~spd~~~las~s~Dg~I 541 (545)
.....|.++...+++. |.+++. +.|..||..+++. .+. .....|.++...++|.+.++.. .| |
T Consensus 490 ~~~~~~~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l 564 (795)
T 4a2l_A 490 KDGTPVVSKQITTLFRDSHKR-LWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-F 564 (795)
T ss_dssp TTCCBCCCCCEEEEEECTTCC-EEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-E
T ss_pred ccccccCCceEEEEEECCCCC-EEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-c
Confidence 1236789999999888 555555 6699999887766 332 1335789999988888665543 35 4
Q ss_pred EEc
Q 009059 542 KIW 544 (545)
Q Consensus 542 ~iW 544 (545)
..|
T Consensus 565 ~~~ 567 (795)
T 4a2l_A 565 YCF 567 (795)
T ss_dssp EEE
T ss_pred eeE
Confidence 433
No 245
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.98 E-value=1.1e-07 Score=101.25 Aligned_cols=261 Identities=11% Similarity=0.098 Sum_probs=164.6
Q ss_pred CCEEEEEeC-CCcEEEEEc-CCCeEEEEeccCCc-c---------E-EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 009059 275 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQ-W---------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 341 (545)
Q Consensus 275 g~~latg~~-dg~I~lwd~-~~~~~~~~l~~h~~-~---------V-~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~ 341 (545)
+..|++++. ++.|.-+|. .+++.+..+..... . + ..+++ .+..+++++.|+.|..+|..+++...
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 446666666 789999999 89998877643221 0 0 11223 35678888899999999999988633
Q ss_pred eEec-cCcc--cEE-EEEEeCCCCcEEEEEcC------CCcEEEEECCCCceeeEEeccCCe------------------
Q 009059 342 RTFT-GHST--TVM-SLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGA------------------ 393 (545)
Q Consensus 342 ~~~~-~h~~--~V~-~l~~~p~~~~ll~s~s~------dg~I~lwd~~~~~~~~~~~~~~~v------------------ 393 (545)
+.-. .+.. .+. ..... +..++ .+.. ++.|+.+|..+++.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~--~g~v~-vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~ 216 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA--KDTVL-MGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ 216 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE--TTEEE-EECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred EecCCCCCccceeccCCEEE--CCEEE-EEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccc
Confidence 3221 1110 111 11112 23444 4443 789999999999998877643321
Q ss_pred ---------------------eEEEEeCCCCEEEEEECC----------------CeEEEEECCCCEEEEEecC--CC--
Q 009059 394 ---------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQG--HK-- 432 (545)
Q Consensus 394 ---------------------~~l~~sp~~~~l~~~~~d----------------g~I~i~d~~~~~~~~~~~~--h~-- 432 (545)
..+++.++.+.++++..+ +.|..+|.++++.+..++. |.
T Consensus 217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~ 296 (571)
T 2ad6_A 217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW 296 (571)
T ss_dssp SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence 235677777788777642 3599999999998887753 21
Q ss_pred ------CCEEEEEEcCCCC---EEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC-------------Cce----------
Q 009059 433 ------NQVHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NKF---------- 479 (545)
Q Consensus 433 ------~~I~~l~~sp~g~---~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~-------------~~v---------- 479 (545)
.++. +....+|+ +++.++ +|.++++|..+++ .+....... .++
T Consensus 297 d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~ 372 (571)
T 2ad6_A 297 DFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN---LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMD 372 (571)
T ss_dssp CCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTT
T ss_pred ccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC---EEeeecccCCccccccccccCCceecccccCCCCC
Confidence 2221 22224674 566666 8899999998884 333332111 111
Q ss_pred ----------------EEEEEcCCCCEEEEEEc-------------------------------------CCeEEEEeCC
Q 009059 480 ----------------HSCVFHPTFPSLLVIGC-------------------------------------YETLELWNMT 506 (545)
Q Consensus 480 ----------------~~~~~sp~~~~l~~~~~-------------------------------------dg~I~iwd~~ 506 (545)
..++++|+...+++... ++.|+.||+.
T Consensus 373 ~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~ 452 (571)
T 2ad6_A 373 HKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLT 452 (571)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTT
T ss_pred CCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECC
Confidence 23577888777776542 4689999999
Q ss_pred CCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 507 ENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 507 ~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+++.+ ... +...+....+...+.+|+.++.||.|+.||
T Consensus 453 tG~~~W~~~-~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 453 TGKAKWTKW-EKFAAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp TCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred CCCEEEEec-CCCCccceeEEECCCEEEEEcCCCeEEEEE
Confidence 99887 332 333333333344567788899999999875
No 246
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.97 E-value=3.1e-07 Score=87.09 Aligned_cols=202 Identities=7% Similarity=0.038 Sum_probs=139.4
Q ss_pred eEEEEeecCCCC--CeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCeEEEEeccCC-ccEEEEEEcCCCCEEEEE-eCC
Q 009059 253 FTEFQLIPASTS--KVESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATS-SAD 326 (545)
Q Consensus 253 ~~~~~~l~~H~~--~V~~l~~spdg~~latg~~--dg~I~lwd~~~~~~~~~l~~h~-~~V~~l~~sp~~~~l~t~-s~d 326 (545)
++.+..+. |.. ....++|++|+.++++.+. ++.|.++|+.+++.+..+.-.. .....+++. +..|+.+ -.+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 34455553 443 3679999998755555543 5799999999999998764222 223345554 4455544 457
Q ss_pred CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC------CeeEEEEeC
Q 009059 327 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------GATQMRFQP 400 (545)
Q Consensus 327 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~------~v~~l~~sp 400 (545)
+.+.++|..+.+. +..+......- ..+.++++.++++- .++.|.++|..+.+.+..+.... .+..+.|.
T Consensus 86 ~~v~viD~~t~~v-~~~i~~g~~~g--~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 86 NIGFIYDRRTLSN-IKNFTHQMKDG--WGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp SEEEEEETTTTEE-EEEEECCSSSC--CEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred CEEEEEECCCCcE-EEEEECCCCCe--EEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 8999999998765 55554221222 33455777888655 58899999999998888776432 36678888
Q ss_pred CCCEEEEEE-CCCeEEEEECCCCEEEEEecCC-------------CCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCC
Q 009059 401 RLGRILAAA-IENYISILDVETQVCRLKLQGH-------------KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG 463 (545)
Q Consensus 401 ~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h-------------~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~ 463 (545)
+ +.+++.. .++.|.+.|..+++.+..+... ....+.|+|+|+++.|++++ .+.|.+.++...
T Consensus 161 d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 161 N-GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp T-TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred C-CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 5 4666666 4789999999999988877531 13678999999987666655 668888887543
No 247
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.95 E-value=6.3e-07 Score=88.18 Aligned_cols=234 Identities=10% Similarity=0.020 Sum_probs=145.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec-------------------cCCccEEEEEEcCCCCEEEEEeC
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------------------EHTQWITDVRFSPSLSRLATSSA 325 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~-------------------~h~~~V~~l~~sp~~~~l~t~s~ 325 (545)
...+++|.+++++++++..++.|..|+..+++...... .....+..+++.++...|+.+..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 45678999999978888889999999987654432110 01135789999973344555555
Q ss_pred CCeEEEEECCCCCeeeeEecc-----CcccEEEEEEeC-CCCcEEEEEcC-----------------CCcEEEEECCCCc
Q 009059 326 DRTVRVWDTENPDYSLRTFTG-----HSTTVMSLDFHP-SKEDLLCSCDN-----------------NSEIRYWSINNGS 382 (545)
Q Consensus 326 dg~I~vwd~~~~~~~~~~~~~-----h~~~V~~l~~~p-~~~~ll~s~s~-----------------dg~I~lwd~~~~~ 382 (545)
.+.|..+|..++. +..+.. .......+++.+ ++. ++++... ++.|..||..+++
T Consensus 100 ~~~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 100 YYHLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp TTEEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred CCCEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 5568888876543 222211 113478899999 874 4434322 3678999988776
Q ss_pred eeeEEeccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCC---EEEEEecCCCCCEEEEEEcCCCCEEEEEeC------
Q 009059 383 CAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVSD------ 452 (545)
Q Consensus 383 ~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~---~~~~~~~~h~~~I~~l~~sp~g~~l~s~sd------ 452 (545)
.............++++++++.++++.. .+.|.+|++... ... .+....+ ...++++++|+++++...
T Consensus 177 ~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~-~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 177 TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE-VLVKIPN-PGNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE-EEEECSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc-eEEeCCC-CCCeEECCCCCEEEEecCcccccc
Confidence 5443333345678999999887777654 689999998742 211 1111223 788999999987776543
Q ss_pred -----CcEEEEEcCCCCCcceEEEEeeCC----CceEEEEEcCCCCEEEEEE-cCCeEEEEeCCCCe
Q 009059 453 -----ELVRVWSIGSGSKGECIHELSCTG----NKFHSCVFHPTFPSLLVIG-CYETLELWNMTENK 509 (545)
Q Consensus 453 -----g~I~vwd~~~~~~~~~i~~~~~~~----~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~ 509 (545)
+.|.++|.. + ..+..+.... ..+..+++ .++. |++++ ..+.|.++++....
T Consensus 255 ~~~~~~~v~~~d~~-G---~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 255 HGRVDPKGIKFDEF-G---NILEVIPLPPPFAGEHFEQIQE-HDGL-LYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp TSCEEEEEEEECTT-S---CEEEEEECCTTTTTSCCCEEEE-ETTE-EEEECSSCSEEEEEEC----
T ss_pred cCCCccEEEEECCC-C---CEEEEEECCCCCccccceEEEE-eCCE-EEEeecCCCceEEEeccccc
Confidence 457777753 3 4444444332 34566666 3444 55544 55688888876443
No 248
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.95 E-value=5.8e-07 Score=88.45 Aligned_cols=232 Identities=9% Similarity=0.003 Sum_probs=143.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEec------------------cCcccEEEEEEeCCCCcEEEEEc
Q 009059 307 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT------------------GHSTTVMSLDFHPSKEDLLCSCD 368 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~------------------~h~~~V~~l~~~p~~~~ll~s~s 368 (545)
...+++|.+++++++++..++.|..|+...+........ .....+..+++.+++..++ .+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-IVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-EEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-EEE
Confidence 356688999998888888899999999876543211110 0113578999997334555 343
Q ss_pred CCCcEEEEECCCCceeeEEec-----cCCeeEEEEeC-CCCEEEEEEC-----------------CCeEEEEECCCCEEE
Q 009059 369 NNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQP-RLGRILAAAI-----------------ENYISILDVETQVCR 425 (545)
Q Consensus 369 ~dg~I~lwd~~~~~~~~~~~~-----~~~v~~l~~sp-~~~~l~~~~~-----------------dg~I~i~d~~~~~~~ 425 (545)
..+.|..+|..++........ ......+++.+ ++..+++-.. ++.|..||..+++..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 345588898775543221111 12467899999 7654444322 367999998877644
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc-------
Q 009059 426 LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC------- 496 (545)
Q Consensus 426 ~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~------- 496 (545)
..... ......|+|++++++|+.+. .+.|.+|++....... ...+..... ...+++.++|+++++...
T Consensus 179 ~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 179 LLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMH 255 (322)
T ss_dssp EEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTT
T ss_pred EeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEeCCC-CCCeEECCCCCEEEEecCccccccc
Confidence 32221 23456799999999776664 6799999987532211 111111223 788999999985555444
Q ss_pred ---CCeEEEEeCCCCeEE-EeccC----CCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 497 ---YETLELWNMTENKTL-TLSAH----DKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 497 ---dg~I~iwd~~~~~~~-~~~~h----~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
.+.|..+|.. ++.+ .+... -..++.+++ .++.++++...++.|.++
T Consensus 256 ~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~ 309 (322)
T 2fp8_A 256 GRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGIL 309 (322)
T ss_dssp SCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEE
T ss_pred CCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEE
Confidence 3578888875 4444 33322 245777776 355555555566777665
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.93 E-value=1.9e-07 Score=87.56 Aligned_cols=192 Identities=12% Similarity=0.125 Sum_probs=134.3
Q ss_pred eEEEEeccCCc--cEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC
Q 009059 296 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 371 (545)
Q Consensus 296 ~~~~~l~~h~~--~V~~l~~sp~~~~l~t~s~dg--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg 371 (545)
+.+.++ .|.. ....|.|+ ++.++.+.+.+| .|+++|+.+++. +..+.-. .........++++.++...-.++
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv-~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT-LQQIELG-KRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE-EEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcE-EEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence 344555 3443 35788998 666666666665 899999999886 4444322 23333222333567777777799
Q ss_pred cEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCC--C---CCEEEEEEcCCCCE
Q 009059 372 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH--K---NQVHSVCWNTSGEY 446 (545)
Q Consensus 372 ~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h--~---~~I~~l~~sp~g~~ 446 (545)
.+.+||..+.+.+..+.....- ..+.++++.|+.+..++.|.++|..+.+.+..+.-. . ..++.+.|. +|++
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l 184 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI 184 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEEECccCcEEEEEECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence 9999999999999999875533 344456778888777889999999998887776542 1 345667886 6766
Q ss_pred EEEEe-CCcEEEEEcCCCCCcceEEEEeeC------------CCceEEEEEcCCCCEEEEEEcC
Q 009059 447 LASVS-DELVRVWSIGSGSKGECIHELSCT------------GNKFHSCVFHPTFPSLLVIGCY 497 (545)
Q Consensus 447 l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~------------~~~v~~~~~sp~~~~l~~~~~d 497 (545)
++... ++.|.+.|..++ +.+..+... ....+.++|+|+++.|++.+..
T Consensus 185 yan~w~~~~I~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEETTSSEEEEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEEccCCeEEEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 65555 779999999988 555555432 2356899999998888887764
No 250
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.92 E-value=5.5e-07 Score=96.03 Aligned_cols=263 Identities=10% Similarity=0.039 Sum_probs=164.2
Q ss_pred CCEEEEEeC-CCcEEEEEc-CCCeEEEEeccCCcc-----------EEEEEEcCCCCE----EEEEeCCCeEEEEECCCC
Q 009059 275 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQW-----------ITDVRFSPSLSR----LATSSADRTVRVWDTENP 337 (545)
Q Consensus 275 g~~latg~~-dg~I~lwd~-~~~~~~~~l~~h~~~-----------V~~l~~sp~~~~----l~t~s~dg~I~vwd~~~~ 337 (545)
+..|++++. ++.|.-+|. .+++.+..+...... ...+++.|.+.. |+.++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446666676 889999999 899998776532210 123455443334 888889999999999998
Q ss_pred CeeeeEeccC-c--ccEE-EEEEeCCCCcEEEEEc------CCCcEEEEECCCCceeeEEeccCCe--------------
Q 009059 338 DYSLRTFTGH-S--TTVM-SLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGA-------------- 393 (545)
Q Consensus 338 ~~~~~~~~~h-~--~~V~-~l~~~p~~~~ll~s~s------~dg~I~lwd~~~~~~~~~~~~~~~v-------------- 393 (545)
+...+.-... . ..+. ...+. + ..++ .+. .+|.|+.+|.++++.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~-vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-K-DKVI-IGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-T-TEEE-ECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CEEEeecCCCCCccceeecCCEEE-C-CEEE-EEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 8643322211 0 0111 11122 2 3444 443 3799999999999998877654322
Q ss_pred -------------------------eEEEEeCCCCEEEEEECC----------------CeEEEEECCCCEEEEEecCCC
Q 009059 394 -------------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQGHK 432 (545)
Q Consensus 394 -------------------------~~l~~sp~~~~l~~~~~d----------------g~I~i~d~~~~~~~~~~~~h~ 432 (545)
..+++.+..+.++++..+ +.|..+|.++++.+..++...
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~ 298 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence 135677788888888765 389999999999988776421
Q ss_pred ----------CCEEEEEEc-CCC---CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC-------------CCce-----
Q 009059 433 ----------NQVHSVCWN-TSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKF----- 479 (545)
Q Consensus 433 ----------~~I~~l~~s-p~g---~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~-------------~~~v----- 479 (545)
.++. +... .+| ..++.++ +|.++++|..+++ .+...... ..++
T Consensus 299 ~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~ 374 (599)
T 1w6s_A 299 HDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA---LVSANKLDDTVNVFKSVDLKTGQPVRDPEY 374 (599)
T ss_dssp TCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCCEEECGGG
T ss_pred CccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCC---EeecccccCCcccccccccCCCceeecccc
Confidence 1222 2222 467 4666676 8899999998884 33332211 0111
Q ss_pred ---------------------EEEEEcCCCCEEEEEE---------------------------------------cCCe
Q 009059 480 ---------------------HSCVFHPTFPSLLVIG---------------------------------------CYET 499 (545)
Q Consensus 480 ---------------------~~~~~sp~~~~l~~~~---------------------------------------~dg~ 499 (545)
..++++|+...+++.. ..+.
T Consensus 375 ~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~ 454 (599)
T 1w6s_A 375 GTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQ 454 (599)
T ss_dssp CCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEE
T ss_pred CCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCe
Confidence 2345666665554431 2468
Q ss_pred EEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 500 LELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 500 I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|..||+.+++.+ ... +..++..-.+...+.+|+.++.||.|+.||
T Consensus 455 l~A~D~~tG~~~W~~~-~~~~~~~g~~~tagg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 455 IKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp EEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred EEEEECCCCCEEeEec-CCCCccCcceEecCCEEEEECCCCeEEEEE
Confidence 999999999887 332 222222212233567888899999998875
No 251
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.92 E-value=2.1e-06 Score=83.74 Aligned_cols=233 Identities=9% Similarity=0.022 Sum_probs=144.4
Q ss_pred CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEc-CCC-c
Q 009059 295 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNS-E 372 (545)
Q Consensus 295 ~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s-~dg-~ 372 (545)
.+.+..+... .....++|+++++++++-..++.|..||.... . ...+. ....+..+++.+++. ++++.. .++ .
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~-~~~~~-~~~~p~gia~~~dG~-l~vad~~~~~~~ 96 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-Q-QIHAT-VEGKVSGLAFTSNGD-LVATGWNADSIP 96 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-E-EEEEE-CSSEEEEEEECTTSC-EEEEEECTTSCE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-e-EEEEe-CCCCceeEEEcCCCc-EEEEeccCCcce
Confidence 3444455432 45788999999987777667899999998753 2 22222 345688999999986 443432 232 4
Q ss_pred EEEEECCCCceeeEEecc--CCeeEEEEeCCCCEEEEEE-CCCeEEEEECCCCEE-EEEec---------CCCCCEEEEE
Q 009059 373 IRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAA-IENYISILDVETQVC-RLKLQ---------GHKNQVHSVC 439 (545)
Q Consensus 373 I~lwd~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~-~~~~~---------~h~~~I~~l~ 439 (545)
|..+|..+++........ .....++..+. +.+++.. .++.|+++|..++.. +.... ..-...+.|
T Consensus 97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred EEEEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 777787777765443322 12344555444 5555555 488999999886532 21111 111245566
Q ss_pred EcCCCCEEEEEe--CCcEEEEEcCC-CCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEE---e
Q 009059 440 WNTSGEYLASVS--DELVRVWSIGS-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT---L 513 (545)
Q Consensus 440 ~sp~g~~l~s~s--dg~I~vwd~~~-~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~---~ 513 (545)
++++.+|+.+. .+.|.+|++.. +.. .....+.. ......++++++|+.+++....+.|.+||.. ++... +
T Consensus 175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~ 250 (306)
T 2p4o_A 175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA 250 (306)
T ss_dssp -EEETTEEEEEETTTTEEEEEEBCTTSCB-CCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG
T ss_pred -CcCCCEEEEEeCCCCEEEEEEeCCCCCC-CccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec
Confidence 78888777766 66999999875 221 11111111 1345678999999865555556799999986 55432 2
Q ss_pred ccCCCCeeEEEEe---CCCCEEEEEeCC
Q 009059 514 SAHDKLVSSLAAS---TVNGMVASASHD 538 (545)
Q Consensus 514 ~~h~~~V~~l~~s---pd~~~las~s~D 538 (545)
......+++++|. ++++.|+.++..
T Consensus 251 ~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 251 EQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ccccCCceEEEEecccCCCCEEEEECCC
Confidence 2223568999998 888877666543
No 252
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.90 E-value=4.2e-07 Score=85.25 Aligned_cols=196 Identities=14% Similarity=0.170 Sum_probs=133.3
Q ss_pred eEEEEeecCCCCC--eEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCeEEEEeccCCcc-EEEEEEcCCCCEEEEEe-CC
Q 009059 253 FTEFQLIPASTSK--VESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSS-AD 326 (545)
Q Consensus 253 ~~~~~~l~~H~~~--V~~l~~spdg~~latg~~dg--~I~lwd~~~~~~~~~l~~h~~~-V~~l~~sp~~~~l~t~s-~d 326 (545)
++.++.+ .|... ...+.|+ ++.++.+.+.+| .|+++|+++++.+..+.-.... -..+++ ++..|+... .+
T Consensus 31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~ 106 (262)
T 3nol_A 31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSS
T ss_pred eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeC
Confidence 4445555 44443 3788998 677777777665 8999999999999887543322 123444 344555554 58
Q ss_pred CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc------CCeeEEEEeC
Q 009059 327 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQMRFQP 400 (545)
Q Consensus 327 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~------~~v~~l~~sp 400 (545)
+.+.+||..+.+. +.++... ..-+.++ +++..++++- .++.|.++|..+.+.+..+... ..++.+.|.
T Consensus 107 ~~v~v~D~~t~~~-~~ti~~~-~eG~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~- 180 (262)
T 3nol_A 107 GLGFVWNIRNLRQ-VRSFNYD-GEGWGLT--HNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV- 180 (262)
T ss_dssp SEEEEEETTTCCE-EEEEECS-SCCCCEE--ECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-
T ss_pred CEEEEEECccCcE-EEEEECC-CCceEEe--cCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-
Confidence 8999999998775 5555532 2223444 5566777554 4778999999999988887653 234567776
Q ss_pred CCCEEEEEE-CCCeEEEEECCCCEEEEEecCC------------CCCEEEEEEcCCCCEEEEEeCCcEEEEE
Q 009059 401 RLGRILAAA-IENYISILDVETQVCRLKLQGH------------KNQVHSVCWNTSGEYLASVSDELVRVWS 459 (545)
Q Consensus 401 ~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h------------~~~I~~l~~sp~g~~l~s~sdg~I~vwd 459 (545)
+ +.+++.. .++.|.+.|.++++.+..+... ..-.+.|+|+|+++.|++.+..-=++|.
T Consensus 181 ~-G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~e 251 (262)
T 3nol_A 181 D-GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFE 251 (262)
T ss_dssp T-TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred C-CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEE
Confidence 4 4666666 4789999999999988876532 2356899999998877777644333333
No 253
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=4.6e-06 Score=92.58 Aligned_cols=274 Identities=8% Similarity=-0.047 Sum_probs=176.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec--------------cCCccEEEEEEcCCCCEEEEEeCCCe
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------------EHTQWITDVRFSPSLSRLATSSADRT 328 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~--------------~h~~~V~~l~~sp~~~~l~t~s~dg~ 328 (545)
...|.++...++|.+ ..|+..+-|.+++..+.+...... -....|.++...++|. |..|+.++-
T Consensus 257 ~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKL-WIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSEE-EEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCCE-EEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 457999999888864 456665678889987655332111 1345799999988775 666776777
Q ss_pred EEEEECCCCCeeeeEec--------cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe----ccCCeeEE
Q 009059 329 VRVWDTENPDYSLRTFT--------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQM 396 (545)
Q Consensus 329 I~vwd~~~~~~~~~~~~--------~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~----~~~~v~~l 396 (545)
|..|+............ .....|.++...+++. +. .|..++-|..||..++....... ....|.++
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i 412 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS 412 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence 88998876543111110 1235689998887754 33 55556669999987654332111 12347788
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCEEEEEec--CCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEe-
Q 009059 397 RFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS- 473 (545)
Q Consensus 397 ~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~- 473 (545)
...++ +.|.+++.++.|..||..+++...... .....|.++...++|.+.+... +-|.+||..++.. .......
T Consensus 413 ~~d~~-g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~-~~~~~~~~ 489 (781)
T 3v9f_A 413 LKDSE-GNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKV-IHHYDTSN 489 (781)
T ss_dssp EECTT-SCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSC-CEEECTTT
T ss_pred EECCC-CCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeE-EecccCcc
Confidence 77766 557778887889999998876543221 1346899999988887666554 6688999876532 1111111
Q ss_pred --eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEecc----CCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 474 --CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA----HDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 474 --~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~----h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.....|.++...+++. |.+++.++.|..||..+++...+.. ....|.++...++|.+.++. .+|.|..||
T Consensus 490 ~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d 565 (781)
T 3v9f_A 490 SQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPS 565 (781)
T ss_dssp SSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESC
T ss_pred cccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEEC
Confidence 1136789999998887 6667765668889988877665432 23568899988888866554 467646554
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.86 E-value=3.8e-07 Score=85.50 Aligned_cols=179 Identities=9% Similarity=0.055 Sum_probs=129.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEE--EEEEeCCCCcEEEEEcCCCcEEEEECCCCcee
Q 009059 307 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM--SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 384 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~--~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~ 384 (545)
....|.|+ ++.++++.+.+|.|+++|+.+++. +..+.. .... .+++ .++.++...-.++.+.+||..+.+.+
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv-~~~~l~--~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQP-VWMERL--GNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSC-SEEEEC--TTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcE-EeEECC--CCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEE
Confidence 35788887 456667777888999999999886 444322 2333 3444 45677777778999999999999999
Q ss_pred eEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCC-----CCEEEEEEcCCCCEEEEEe-CCcEEEE
Q 009059 385 GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEYLASVS-DELVRVW 458 (545)
Q Consensus 385 ~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-----~~I~~l~~sp~g~~l~s~s-dg~I~vw 458 (545)
..+.....-..++ ++++.|+++..++.|.++|.++.+.+..+.-.. ..++.+.|. +|++++... ++.|.+.
T Consensus 130 ~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vI 206 (268)
T 3nok_A 130 RTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEI 206 (268)
T ss_dssp EEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred EEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEE
Confidence 9998755444444 567888888889999999999998887765421 255778887 776665555 7799999
Q ss_pred EcCCCCCcceEEEEeeC-------------CCceEEEEEcCCCCEEEEEEcC
Q 009059 459 SIGSGSKGECIHELSCT-------------GNKFHSCVFHPTFPSLLVIGCY 497 (545)
Q Consensus 459 d~~~~~~~~~i~~~~~~-------------~~~v~~~~~sp~~~~l~~~~~d 497 (545)
|..++ +.+..+... ....+.++++|+++.|++.+..
T Consensus 207 Dp~TG---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 207 DPATG---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp CTTTC---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred eCCCC---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 99988 555554422 2356899999988777776653
No 255
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.84 E-value=6e-06 Score=80.50 Aligned_cols=227 Identities=9% Similarity=0.018 Sum_probs=140.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC-C-eEEEEECCCCCeee
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R-TVRVWDTENPDYSL 341 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d-g-~I~vwd~~~~~~~~ 341 (545)
.....++|+++++++++-..++.|..||.... ....+. ....+..+++.++++++++.... + .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 45778999999997777767899999997753 333332 23568899999999866655433 2 46667776665321
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce-eeEEe----------ccCCeeEEEEeCCCCEEEEEEC
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK----------CQSGATQMRFQPRLGRILAAAI 410 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~-~~~~~----------~~~~v~~l~~sp~~~~l~~~~~ 410 (545)
..-.........++..+. ..++++...++.|+++|...+.. +.... .-.....+ +++++.++++..
T Consensus 110 ~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~ 186 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT 186 (306)
T ss_dssp EEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred EEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence 111112223345554444 45555555688999999876431 11000 00124445 788777777765
Q ss_pred -CCeEEEEECCC-CEE--EEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEc
Q 009059 411 -ENYISILDVET-QVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 485 (545)
Q Consensus 411 -dg~I~i~d~~~-~~~--~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~s 485 (545)
.+.|.+||+.. +.. ...+.. ......++++++|+++++.. .+.|.++|.. +.. ..+..+........+++|.
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~-~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST-TIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE-EEEECGGGTCTTEEEEEEC
T ss_pred CCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE-EEEeecccccCCceEEEEe
Confidence 67999999874 321 111111 13456789999998766665 6799999864 311 1122233333568999998
Q ss_pred ---CCCCEEEEEEcCC
Q 009059 486 ---PTFPSLLVIGCYE 498 (545)
Q Consensus 486 ---p~~~~l~~~~~dg 498 (545)
+++..|+++...+
T Consensus 264 g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 264 QTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CSTTTTTEEEEEECTT
T ss_pred cccCCCCEEEEECCCC
Confidence 8888888877654
No 256
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.83 E-value=8.5e-06 Score=81.13 Aligned_cols=238 Identities=9% Similarity=0.008 Sum_probs=153.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeee
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSL 341 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~-s~dg~I~vwd~~~~~~~~ 341 (545)
.+..+|.+..+++ +|+.+. ...|+..++........+.. ...+..++|.+....|+.+ ...+.|..+++..... .
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~ 108 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-E 108 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-e
Confidence 3445666666644 555443 45688888876555444443 3457899999766655554 4578899999886543 2
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEEC-C-CeEEEEE
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI-E-NYISILD 418 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~-d-g~I~i~d 418 (545)
..+.........+++.+.+..++++-...+.|.+.++........+. .......++++|.++.++.+.. . +.|..++
T Consensus 109 ~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 109 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 22222234567899998777888777778899999987554333332 2245789999998787777765 3 7899998
Q ss_pred CCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-
Q 009059 419 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG- 495 (545)
Q Consensus 419 ~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~- 495 (545)
+........+...-...+.|+++|++..|+.+. .+.|..+|+..... ...+.........+++. .+ .|+.+.
T Consensus 189 ~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~---~~~~~~~~~~P~giav~-~~-~ly~td~ 263 (349)
T 3v64_C 189 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---KAVISQGLPHPFAITVF-ED-SLYWTDW 263 (349)
T ss_dssp TTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSSEEEEEEE-TT-EEEEEET
T ss_pred CCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce---EEEEeCCCCCceEEEEE-CC-EEEEecC
Confidence 875433322222345679999998877777666 56899999865321 12222234456777773 33 455554
Q ss_pred cCCeEEEEeCCCCe
Q 009059 496 CYETLELWNMTENK 509 (545)
Q Consensus 496 ~dg~I~iwd~~~~~ 509 (545)
..+.|..++..+++
T Consensus 264 ~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 264 HTKSINSANKFTGK 277 (349)
T ss_dssp TTTEEEEEETTTCC
T ss_pred CCCeEEEEEccCCC
Confidence 45588888855544
No 257
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.82 E-value=7.1e-07 Score=97.01 Aligned_cols=257 Identities=12% Similarity=0.131 Sum_probs=157.0
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCc-cEEEEEEcC--CCCEEEEEeC------CCeEEEEECCCCCeeeeEec
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSP--SLSRLATSSA------DRTVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~-~V~~l~~sp--~~~~l~t~s~------dg~I~vwd~~~~~~~~~~~~ 345 (545)
+..|++++.|+.|..+|.++|+.+..+..... ....+...| .+..++++.. +|.|..+|..+++...+...
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 45788888899999999999999877654210 000011111 1334555432 58999999999886333221
Q ss_pred c--Cc----------------------------ccEEEEEEeCCCCcEEEEEcCCC-------------------cEEEE
Q 009059 346 G--HS----------------------------TTVMSLDFHPSKEDLLCSCDNNS-------------------EIRYW 376 (545)
Q Consensus 346 ~--h~----------------------------~~V~~l~~~p~~~~ll~s~s~dg-------------------~I~lw 376 (545)
. .. .....+++.|+.. +++.+..++ .|..+
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 0 00 0112467777755 455665555 49999
Q ss_pred ECCCCceeeEEecc----------CCeeEEEEeCCCC---EEEEEECCCeEEEEECCCCEEEEEecCCCC----------
Q 009059 377 SINNGSCAGVFKCQ----------SGATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHKN---------- 433 (545)
Q Consensus 377 d~~~~~~~~~~~~~----------~~v~~l~~sp~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~---------- 433 (545)
|..+++.+..+... .......+..++. .+++++.+|.++++|.++++.+........
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~ 355 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence 99999999888743 1222233334544 577888899999999999988754332110
Q ss_pred --CE------------------------EEEEEcCCCCEEEEE------------------------------------e
Q 009059 434 --QV------------------------HSVCWNTSGEYLASV------------------------------------S 451 (545)
Q Consensus 434 --~I------------------------~~l~~sp~g~~l~s~------------------------------------s 451 (545)
++ ..++++|+..++++. .
T Consensus 356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~ 435 (668)
T 1kv9_A 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (668)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence 00 125677776665541 1
Q ss_pred -CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCe-eEEEEeCC
Q 009059 452 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLV-SSLAASTV 528 (545)
Q Consensus 452 -dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V-~~l~~spd 528 (545)
++.|..||+.++ +.+-..... .......+...+..+++++.++.|++||.++++.+ .+....... .-+.+..+
T Consensus 436 ~~g~l~A~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~ 511 (668)
T 1kv9_A 436 VSGALLAWDPVKQ---KAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELA 511 (668)
T ss_dssp CEEEEEEEETTTT---EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred ccceEEEEeCCCC---cEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEEC
Confidence 367999999888 444444332 22333344556778899999999999999999988 443322111 22344456
Q ss_pred CC-EEEEEe
Q 009059 529 NG-MVASAS 536 (545)
Q Consensus 529 ~~-~las~s 536 (545)
|+ +++.++
T Consensus 512 G~~yva~~~ 520 (668)
T 1kv9_A 512 GRQYVAIMA 520 (668)
T ss_dssp TEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 66 555444
No 258
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.82 E-value=2.7e-05 Score=76.24 Aligned_cols=229 Identities=8% Similarity=-0.045 Sum_probs=146.3
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEE-eCCCeEEEEECCCC---CeeeeEeccCcccEE
Q 009059 277 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENP---DYSLRTFTGHSTTVM 352 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~-s~dg~I~vwd~~~~---~~~~~~~~~h~~~V~ 352 (545)
+|+.+. ...|+..|+.+.+....+. ....+..++|.+.+..|+.+ ...+.|..+++... ......+...-....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 444444 3578999988776555544 34567899999866555554 45689999998751 221222322224567
Q ss_pred EEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECC--CeEEEEECCCCEEEEEec
Q 009059 353 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQ 429 (545)
Q Consensus 353 ~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~d--g~I~i~d~~~~~~~~~~~ 429 (545)
.+++.+.+..++++-...+.|.++++........+. .......+++.|.++.++.+... +.|..+++..........
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 899987767787777778899999987554433333 23467899999988888777653 689999886543322223
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCCeEEEEeCC
Q 009059 430 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMT 506 (545)
Q Consensus 430 ~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~ 506 (545)
..-.....|++++++..|+.+. .+.|..+|+... ....+............+++. .+ .|+.+. ..+.|..+|..
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~-~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-ED-KVFWTDIINEAIFSANRL 237 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TT-EEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CC-EEEEEECCCCeEEEEeCC
Confidence 3345788999999887777666 569999998743 222222211123445677775 33 455554 45589999876
Q ss_pred CCeE
Q 009059 507 ENKT 510 (545)
Q Consensus 507 ~~~~ 510 (545)
+++.
T Consensus 238 ~g~~ 241 (316)
T 1ijq_A 238 TGSD 241 (316)
T ss_dssp TCCC
T ss_pred CCcc
Confidence 6543
No 259
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.81 E-value=2.6e-06 Score=79.14 Aligned_cols=186 Identities=10% Similarity=0.097 Sum_probs=128.0
Q ss_pred eeEeccCc--ccEEEEEEeCCCCcEEEEEcCCC--cEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-CCeEE
Q 009059 341 LRTFTGHS--TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYIS 415 (545)
Q Consensus 341 ~~~~~~h~--~~V~~l~~~p~~~~ll~s~s~dg--~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~ 415 (545)
+..+ .|. .....+.|++ ..++.+.+.+| .|+.+|+.+++.+..+..........+...++.++.... ++.+.
T Consensus 12 ~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 12 VKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF 88 (243)
T ss_dssp EEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence 3444 454 3466899986 46776777654 899999999999999887776655444445567776664 88999
Q ss_pred EEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC--C---CceEEEEEcCCCC
Q 009059 416 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--G---NKFHSCVFHPTFP 489 (545)
Q Consensus 416 i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~--~---~~v~~~~~sp~~~ 489 (545)
+||..+.+.+.++.... .-..++ +++..|+.+. ++.|.++|..+. ..+..+... . ..++.+.+. +++
T Consensus 89 v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~---~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 89 VYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTL---QQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp EEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCC---eEEEEEEEccCCcccccceeeEEe-CCE
Confidence 99999999998887533 224555 4566555555 779999999887 444444332 1 234556665 555
Q ss_pred EEEEEE-cCCeEEEEeCCCCeEE-Eec--c-----------CCCCeeEEEEeCCCCEEEEEeC
Q 009059 490 SLLVIG-CYETLELWNMTENKTL-TLS--A-----------HDKLVSSLAASTVNGMVASASH 537 (545)
Q Consensus 490 ~l~~~~-~dg~I~iwd~~~~~~~-~~~--~-----------h~~~V~~l~~spd~~~las~s~ 537 (545)
|++.. ..+.|.+.|..+++++ .+. + -....+.|+++|+++.|...+.
T Consensus 162 -lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 162 -LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp -EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred -EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 55554 5679999999999988 222 1 1235789999998876665553
No 260
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.81 E-value=7.5e-07 Score=83.51 Aligned_cols=176 Identities=8% Similarity=0.031 Sum_probs=123.8
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEE-CCCeEEEEECCCCEEEEEe
Q 009059 350 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKL 428 (545)
Q Consensus 350 ~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~~~~~ 428 (545)
....+.|+ ++.|+.+.+.+|.|+++|+.+++.+..+ .........+.+.++.|+... .++.+.+||..+.+.+.++
T Consensus 56 ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 56 FTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp CEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred ccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 34788887 3578888888999999999999999888 666654433444556666655 4889999999999999888
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEee--CC---CceEEEEEcCCCCEEEEEE-cCCeEE
Q 009059 429 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TG---NKFHSCVFHPTFPSLLVIG-CYETLE 501 (545)
Q Consensus 429 ~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~--~~---~~v~~~~~sp~~~~l~~~~-~dg~I~ 501 (545)
... ..-..++ ++++.|+.+. ++.|.++|..+. +.+..+.. .. ..++.+.|. +|. |++.. ..+.|.
T Consensus 133 ~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~---~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~ 204 (268)
T 3nok_A 133 RYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGF---ALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVL 204 (268)
T ss_dssp ECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEE
T ss_pred eCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCC---eEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEE
Confidence 753 2224454 4677777776 789999999887 44444432 22 234566776 665 55555 467999
Q ss_pred EEeCCCCeEE-Eecc-------------CCCCeeEEEEeCCCCEEEEEe
Q 009059 502 LWNMTENKTL-TLSA-------------HDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 502 iwd~~~~~~~-~~~~-------------h~~~V~~l~~spd~~~las~s 536 (545)
+.|..+++++ .+.. -....+.|+++|+++.|...+
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999999987 2221 124678999999876554444
No 261
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.79 E-value=2.2e-06 Score=79.61 Aligned_cols=191 Identities=14% Similarity=0.129 Sum_probs=133.6
Q ss_pred eEEEEeccCC--ccEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCCeeeeEeccCcc-cEEEEEEeCCCCcEEEEEcCC
Q 009059 296 TVKSTLEEHT--QWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDLLCSCDNN 370 (545)
Q Consensus 296 ~~~~~l~~h~--~~V~~l~~sp~~~~l~t~s~d--g~I~vwd~~~~~~~~~~~~~h~~-~V~~l~~~p~~~~ll~s~s~d 370 (545)
+.+.++ .|. .....+.|+. +.++.+.+.+ ..|+++|+.+++. +....-... .-..+++. ++.++...-.+
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv-~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~ 84 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI-LQRAEVPPPYFGAGIVAW--RDRLIQLTWRN 84 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE-EEEEECCTTCCEEEEEEE--TTEEEEEESSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCE-EEEEeCCCCcceeEEEEe--CCEEEEEEeeC
Confidence 444555 344 4467899986 4555555554 4899999999886 444432221 12334444 46777777789
Q ss_pred CcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCC-----CCEEEEEEcCCCC
Q 009059 371 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGE 445 (545)
Q Consensus 371 g~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-----~~I~~l~~sp~g~ 445 (545)
+.+.+||..+.+.+.++.....-..+ .++++.|+++..++.|.++|.++.+.+..+.-.. ..++.+.|. +|+
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred CEEEEEECCcCcEEEEEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence 99999999999999999876544444 4567888888889999999999988877765422 356677776 676
Q ss_pred EEEEEe-CCcEEEEEcCCCCCcceEEEEeeC-------------CCceEEEEEcCCCCEEEEEEcC
Q 009059 446 YLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKFHSCVFHPTFPSLLVIGCY 497 (545)
Q Consensus 446 ~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~-------------~~~v~~~~~sp~~~~l~~~~~d 497 (545)
+++... ++.|.+.|..++ +.+..+... ....+.++++|++..|++.+..
T Consensus 162 lyanvw~s~~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEEETTTTEEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred EEEEECCCCeEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 665554 779999999988 555555422 2356889999988877777754
No 262
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.79 E-value=1e-07 Score=103.71 Aligned_cols=265 Identities=9% Similarity=0.037 Sum_probs=151.4
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEEcCCCeEE--EEec-cCCccEEEEEEcCCCCEEEEEeC-CCeEEE
Q 009059 268 SCHFSP-DGKLLATGGHDK-----------KAVLWCTESFTVK--STLE-EHTQWITDVRFSPSLSRLATSSA-DRTVRV 331 (545)
Q Consensus 268 ~l~~sp-dg~~latg~~dg-----------~I~lwd~~~~~~~--~~l~-~h~~~V~~l~~sp~~~~l~t~s~-dg~I~v 331 (545)
++++.+ ++++++.|+.+. .+.+||..+++-. ..+. .+.....++++..+++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 899999987643 5889998876532 2221 23333445778889999999984 458999
Q ss_pred EECCCCCeeeeEeccCc-ccEEEEEEeCCCCcEEEEEc-CC-----CcEEEEECCCCceeeEE-----eccCCeeEEEEe
Q 009059 332 WDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCD-NN-----SEIRYWSINNGSCAGVF-----KCQSGATQMRFQ 399 (545)
Q Consensus 332 wd~~~~~~~~~~~~~h~-~~V~~l~~~p~~~~ll~s~s-~d-----g~I~lwd~~~~~~~~~~-----~~~~~v~~l~~s 399 (545)
||..+...... -..+. ..-.++++.+++. +++.|+ .+ ..+.+||..+.+....- .....-....+.
T Consensus 270 yd~~t~~W~~~-~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~ 347 (656)
T 1k3i_A 270 YDSSSDSWIPG-PDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR 347 (656)
T ss_dssp EEGGGTEEEEC-CCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred ecCcCCceeEC-CCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceee
Confidence 99987654211 11111 1123445556665 555665 34 46999999876643320 000000001122
Q ss_pred CCCCEEEEEECC---------CeEEEEECCCCEEEEEecCCC---------CCEEEEEEc-CCCCEEEEEe-CC------
Q 009059 400 PRLGRILAAAIE---------NYISILDVETQVCRLKLQGHK---------NQVHSVCWN-TSGEYLASVS-DE------ 453 (545)
Q Consensus 400 p~~~~l~~~~~d---------g~I~i~d~~~~~~~~~~~~h~---------~~I~~l~~s-p~g~~l~s~s-dg------ 453 (545)
.++..++.++.+ ..+..||..+.........+. ..-.++.|. .++++++.|+ ++
T Consensus 348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~ 427 (656)
T 1k3i_A 348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA 427 (656)
T ss_dssp TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence 333444555443 457888988765433222111 123445554 3677777776 32
Q ss_pred -----cEEEEEcCCCCCcceEEEE--eeCC-CceEEEEEcCCCCEEEEEEcC-----------CeEEEEeCCCCeEEEec
Q 009059 454 -----LVRVWSIGSGSKGECIHEL--SCTG-NKFHSCVFHPTFPSLLVIGCY-----------ETLELWNMTENKTLTLS 514 (545)
Q Consensus 454 -----~I~vwd~~~~~~~~~i~~~--~~~~-~~v~~~~~sp~~~~l~~~~~d-----------g~I~iwd~~~~~~~~~~ 514 (545)
.|.+||..+.. ..... .... ....+++..|+++.+++|+.+ ..+.+||..+++...+.
T Consensus 428 ~~~~~~v~~yd~~~~~---W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 504 (656)
T 1k3i_A 428 TTNAHIITLGEPGTSP---NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN 504 (656)
T ss_dssp CCCEEEEECCSTTSCC---EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred CCcceEEEcCCCCCCC---eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecC
Confidence 57777776542 21111 1112 223455677899988888854 46899999887765433
Q ss_pred c---CCCCeeEEEEeCCCCEEEEEeC
Q 009059 515 A---HDKLVSSLAASTVNGMVASASH 537 (545)
Q Consensus 515 ~---h~~~V~~l~~spd~~~las~s~ 537 (545)
. ......+..+.+++++++.||.
T Consensus 505 ~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 505 PNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCccccccHhhcCCCcEEEecCCC
Confidence 1 1122234456789999999985
No 263
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.78 E-value=8.4e-06 Score=82.39 Aligned_cols=237 Identities=9% Similarity=-0.009 Sum_probs=152.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeeeeEe
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTF 344 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~-s~dg~I~vwd~~~~~~~~~~~ 344 (545)
-.|.+..+++ +|+.+. ...|+.+++........+.. ...+..++|.+.+..|+.+ ...+.|..+++..... ...+
T Consensus 79 ~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~ 154 (386)
T 3v65_B 79 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV 154 (386)
T ss_dssp SCEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEE
T ss_pred CeECCccccc-eeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEE
Confidence 4455655533 555443 46788888877655544443 3457899999765555544 4578899999886542 2223
Q ss_pred ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCCEEEEEEC-C-CeEEEEECCC
Q 009059 345 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-E-NYISILDVET 421 (545)
Q Consensus 345 ~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~~~~~-d-g~I~i~d~~~ 421 (545)
.........+++.+.+..++++-...+.|.+.++........+.. ......+++.|.++.|+.+.. . +.|..+++..
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 323345678889887778887777788899999875443333322 245789999998888877765 3 6899999876
Q ss_pred CEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCC
Q 009059 422 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYE 498 (545)
Q Consensus 422 ~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg 498 (545)
..........-...+.|+|+|++..|+.+. .+.|..+|+.... ....+.........+++. .+ .|+.+. ..+
T Consensus 235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~giav~-~~-~ly~td~~~~ 309 (386)
T 3v65_B 235 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-ED-SLYWTDWHTK 309 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS---CEEEECSSCSSEEEEEEE-TT-EEEEEETTTT
T ss_pred CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe---eEEEEECCCCCceEEEEE-CC-EEEEeeCCCC
Confidence 543333333345679999998877777666 5689999986532 122222234456777773 33 455444 455
Q ss_pred eEEEEeCCCCeEE
Q 009059 499 TLELWNMTENKTL 511 (545)
Q Consensus 499 ~I~iwd~~~~~~~ 511 (545)
.|..+|..+++..
T Consensus 310 ~V~~~~~~~G~~~ 322 (386)
T 3v65_B 310 SINSANKFTGKNQ 322 (386)
T ss_dssp EEEEEETTTCCSC
T ss_pred eEEEEECCCCcce
Confidence 8888886555433
No 264
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.78 E-value=5.2e-06 Score=88.50 Aligned_cols=263 Identities=10% Similarity=0.032 Sum_probs=159.6
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEeccCCccE---------EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEecc
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI---------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 346 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V---------~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~ 346 (545)
..|++++.++.|.-+|..+|+.+..+....... ..+++ .+..++.++.|+.|..+|..+++...+.-..
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 355555554459999999999987765432110 11222 3557888889999999999998864332211
Q ss_pred C-cc--cEE-EEEEeC---CCCcEEEEEc------CCCcEEEEECCCCceeeEEeccCC---------------------
Q 009059 347 H-ST--TVM-SLDFHP---SKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSG--------------------- 392 (545)
Q Consensus 347 h-~~--~V~-~l~~~p---~~~~ll~s~s------~dg~I~lwd~~~~~~~~~~~~~~~--------------------- 392 (545)
. .. .+. ...+.. ++..+++.+. .++.|+.+|..+++.+........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 1 10 111 111111 1222444554 378999999999998876643210
Q ss_pred ---------------------eeEEEEeCCCCEEEEEEC--------------------C----CeEEEEECCCCEEEEE
Q 009059 393 ---------------------ATQMRFQPRLGRILAAAI--------------------E----NYISILDVETQVCRLK 427 (545)
Q Consensus 393 ---------------------v~~l~~sp~~~~l~~~~~--------------------d----g~I~i~d~~~~~~~~~ 427 (545)
-..+++.+..+.++++.. | +.|..+|.++++.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 013567777788887773 2 5899999999999887
Q ss_pred ecC--CC--------CCEEEEEEc-CCCC---EEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC-------------Cc-
Q 009059 428 LQG--HK--------NQVHSVCWN-TSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NK- 478 (545)
Q Consensus 428 ~~~--h~--------~~I~~l~~s-p~g~---~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~-------------~~- 478 (545)
++. |. .++. +... .+|+ +|+.++ +|.++++|..+++ .+..+.... .+
T Consensus 307 ~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~ 382 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGK---LQNAFPFVDNITWASHIDLKTGRPV 382 (582)
T ss_dssp EESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSSCCCSEEEECTTTCCEE
T ss_pred EeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCC---EecccccccCccccccccccCCCEe
Confidence 753 32 1222 2222 4674 677777 8999999998884 333322211 00
Q ss_pred -------------------------------eEEEEEcCCCCEEEEEE--------------------------------
Q 009059 479 -------------------------------FHSCVFHPTFPSLLVIG-------------------------------- 495 (545)
Q Consensus 479 -------------------------------v~~~~~sp~~~~l~~~~-------------------------------- 495 (545)
-..++++|+...+++..
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~ 462 (582)
T 1flg_A 383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD 462 (582)
T ss_dssp ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence 01345666655555543
Q ss_pred -cCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 496 -CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 496 -~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.++.|..||+.+++.+ .... ..++..-.+...+.+++.++.||.|+.||
T Consensus 463 ~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 463 DHVGSLRAMDPVSGKVVWEHKE-HLPLWAGVLATAGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp SCSEEEEEECTTTCCEEEEEEE-SSCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred CCcceEEEEECCCCCEEEEecC-CCCCcccceEeCCCEEEEECCCCcEEEEE
Confidence 2568999999999987 3332 22232222233467888899999999875
No 265
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.76 E-value=1.7e-05 Score=87.89 Aligned_cols=273 Identities=10% Similarity=0.038 Sum_probs=171.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc-------CCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~-------h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
...|.++...++|.+.+ |+.++-|..||..+++....... ....|.++...+++.+.+ |+.+ -+.+||..
T Consensus 162 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~ 238 (781)
T 3v9f_A 162 SEQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNAN 238 (781)
T ss_dssp CCCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETT
T ss_pred ccceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCC
Confidence 35688988888876554 66665689999887655432111 135699998888776554 4455 58899987
Q ss_pred CCCeeeeEec------cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe---------------ccCCee
Q 009059 336 NPDYSLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------------CQSGAT 394 (545)
Q Consensus 336 ~~~~~~~~~~------~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~---------------~~~~v~ 394 (545)
+......... .....|.++...+++. +. .|...+-|.++|..+........ ....|.
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lW-igt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~ 316 (781)
T 3v9f_A 239 TETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LW-IATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASAR 316 (781)
T ss_dssp TTEEEC-----------CCCCEEEEEECTTSE-EE-EEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEE
T ss_pred CCcEEEEEcCCCccccccCceEEEEEECCCCC-EE-EEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEE
Confidence 6543111111 1235689998877753 33 45554568999988765432211 123578
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec---------CCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCC
Q 009059 395 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ---------GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK 465 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~---------~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~ 465 (545)
++....+ +.|.+|+.++.|..|+..+........ .....|.+++..++|.+.+...++-|.+||..+...
T Consensus 317 ~i~~D~~-g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~ 395 (781)
T 3v9f_A 317 YIFQDSF-NNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVA 395 (781)
T ss_dssp EEEECSS-CCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEE
T ss_pred EEEEeCC-CCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeE
Confidence 8888887 457788888889999987654322110 023579999999888877655466788999764311
Q ss_pred cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEecc---CCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 009059 466 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVK 542 (545)
Q Consensus 466 ~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~---h~~~V~~l~~spd~~~las~s~Dg~I~ 542 (545)
.............|.++...+++. |.+|+.++.|..||..+++...+.. ....|.++...+++.+.+ |+..| |.
T Consensus 396 ~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~~G-l~ 472 (781)
T 3v9f_A 396 IYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTHAG-VF 472 (781)
T ss_dssp ECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EETTE-EE
T ss_pred EEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EECCc-eE
Confidence 000000122346789999888877 6677777789999998887664432 346789998888776554 44455 44
Q ss_pred Ec
Q 009059 543 IW 544 (545)
Q Consensus 543 iW 544 (545)
+|
T Consensus 473 ~~ 474 (781)
T 3v9f_A 473 VI 474 (781)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 266
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.75 E-value=1.7e-06 Score=92.07 Aligned_cols=252 Identities=9% Similarity=-0.002 Sum_probs=151.5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCC--c--cEEE-EEEcCCCCEEEEEeC------CCeEEEEECCCCCeeeeE
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT--Q--WITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~--~--~V~~-l~~sp~~~~l~t~s~------dg~I~vwd~~~~~~~~~~ 343 (545)
+..|++++.|+.|..+|..+++.+....... . .+.+ .... ++ .+++++. ++.|..+|..+++...+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5577888889999999999999987654221 0 1111 1111 33 5555554 789999999998863322
Q ss_pred eccCcc------------------------------------cE-EEEEEeCCCCcEEEEEcCC----------------
Q 009059 344 FTGHST------------------------------------TV-MSLDFHPSKEDLLCSCDNN---------------- 370 (545)
Q Consensus 344 ~~~h~~------------------------------------~V-~~l~~~p~~~~ll~s~s~d---------------- 370 (545)
...... .+ ..+++.+....++ .+..+
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy-~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFY-YGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGSCSCCTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEE-EECCCCccccCCccCCCceeE
Confidence 211100 00 1345666644444 44321
Q ss_pred CcEEEEECCCCceeeEEeccC----------CeeEEEEeCCCC---EEEEEECCCeEEEEECCCCEEEEEecCCC-----
Q 009059 371 SEIRYWSINNGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK----- 432 (545)
Q Consensus 371 g~I~lwd~~~~~~~~~~~~~~----------~v~~l~~sp~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~----- 432 (545)
+.|..+|..+++.+..+.... ...-+....+++ .+++++.+|.++++|.++++.+..+....
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 359999999999988876431 111122224553 45667789999999999998887654221
Q ss_pred --------CCE--------------------------EEEEEcCCCCEEEEEe---------------------------
Q 009059 433 --------NQV--------------------------HSVCWNTSGEYLASVS--------------------------- 451 (545)
Q Consensus 433 --------~~I--------------------------~~l~~sp~g~~l~s~s--------------------------- 451 (545)
.++ ..++++|+..+|++..
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 111 2356778777666643
Q ss_pred -----------CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCC-C
Q 009059 452 -----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-K 518 (545)
Q Consensus 452 -----------dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~-~ 518 (545)
++.|..||+.++ +.+-.+... ..+....+...+..+++++.++.|+.||.++++.+ .+.... .
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~ 507 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTG---KAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG 507 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred ccCccccCCCCCCeEEEEECCCC---CEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCc
Confidence 357888888877 334443322 22222223334566888899999999999999988 443221 1
Q ss_pred CeeEEEEeCCCCEEE
Q 009059 519 LVSSLAASTVNGMVA 533 (545)
Q Consensus 519 ~V~~l~~spd~~~la 533 (545)
.-..+.+..+++.++
T Consensus 508 ~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 508 IGSPMTYSFKGKQYI 522 (571)
T ss_dssp CSCCEEEEETTEEEE
T ss_pred EeeeEEEEECCEEEE
Confidence 112234556776444
No 267
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.71 E-value=5.1e-05 Score=74.72 Aligned_cols=265 Identities=8% Similarity=-0.009 Sum_probs=150.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe----ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l----~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
...+.+|.|.+++..+|+ +..+.| +...+.++.-..+ ......+.+|.|.+ +..+ .++.++.|.. ..++.
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~-~~g~~g~i~~--S~DgG 108 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGW-IVGEPPIMLH--TTDGG 108 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEE-EEEETTEEEE--ESSTT
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEE-EEECCCeEEE--ECCCC
Confidence 447999999888877775 456755 3333444322222 12345789999976 4444 4455664433 33222
Q ss_pred eeeeEec---cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 339 YSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 339 ~~~~~~~---~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
....... .+...+..+.+.+++ .+++.+. +|.|+. ....++.-.... ....+..+.+.+++..+ +.+.+|.
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~-~~g~~G~ 184 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNG-SAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYV-AVSSRGS 184 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETT-EEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEE-EEETTSS
T ss_pred CCceECccccCCCCCeEEEEEECCC-CEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEE-EEECCCc
Confidence 2222222 233557788877654 4554554 554432 222233222222 23457889999885544 5555565
Q ss_pred EEEE-EC--CCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEee----CCCceEEEEEcC
Q 009059 414 ISIL-DV--ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHP 486 (545)
Q Consensus 414 I~i~-d~--~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~----~~~~v~~~~~sp 486 (545)
++.- |- .+.+.+. ......+..+.+.+++.+++++.+|.+++.+...+ .....+.. ....+..+.+.+
T Consensus 185 ~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G---~tW~~~~~~~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 185 FYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS---ENWGELLSPLRRNSVGFLDLAYRT 259 (327)
T ss_dssp EEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE---EEECCCBCTTSSCCSCEEEEEESS
T ss_pred EEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCC---CeeEeccCCcccCCcceEEEEecC
Confidence 5544 42 3344432 23456889999999999887777888777643222 11111111 123588899998
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCeEE-Eec---cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 487 TFPSLLVIGCYETLELWNMTENKTL-TLS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 487 ~~~~l~~~~~dg~I~iwd~~~~~~~-~~~---~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++. +++++.++.| ++..+.++.- .+. .+...+.++.|.+++ .++.++.+|.|.-++
T Consensus 260 ~~~-~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 260 PNE-VWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp SSC-EEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred CCE-EEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 776 5555667767 4445555433 222 234668889997554 466777889887653
No 268
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=5.3e-06 Score=85.12 Aligned_cols=233 Identities=9% Similarity=0.074 Sum_probs=140.2
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC----cEEEEECCCC
Q 009059 307 WITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNG 381 (545)
Q Consensus 307 ~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg----~I~lwd~~~~ 381 (545)
....|+|+| ++..|+.+...+.|+.+|+.... +..+.........++|+++++.++++...++ .+.+++. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 457889998 45667666665889999998654 3344445567899999999876776655333 2333443 23
Q ss_pred cee--eEEeccCCeeEEEEeCCCCEEEEEE-CCCeEEEEECCCCEEEEEec-CCCCCEEEEEEcCCCCEEEEEe--CCcE
Q 009059 382 SCA--GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELV 455 (545)
Q Consensus 382 ~~~--~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~-~h~~~I~~l~~sp~g~~l~s~s--dg~I 455 (545)
... ..+........++++|+++.|+++. ..+.|..|+...+....... +.......++|+|+|++|+.+. .+.|
T Consensus 215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 222 2333345577889999555566555 57899999998776522222 1224578999999999666665 6689
Q ss_pred EEEEcCCCC-CcceEEEEeeC---------------CCceE-EEEEc--------CCCCEEEEEE-cCCeEEEEeCCCCe
Q 009059 456 RVWSIGSGS-KGECIHELSCT---------------GNKFH-SCVFH--------PTFPSLLVIG-CYETLELWNMTENK 509 (545)
Q Consensus 456 ~vwd~~~~~-~~~~i~~~~~~---------------~~~v~-~~~~s--------p~~~~l~~~~-~dg~I~iwd~~~~~ 509 (545)
.+++..... ....+..+.+. -.... .++.. +++. |+++. ..+.|+.++ .++.
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~-~~G~ 372 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILT-PQGR 372 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEEC-TTSE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEEC-CCCc
Confidence 998875321 00011122211 01122 44543 3344 55554 445899998 4555
Q ss_pred EEEeccC---------C---------CCeeEEEEeCCCCEEEEE-eCCCcEEEc
Q 009059 510 TLTLSAH---------D---------KLVSSLAASTVNGMVASA-SHDKCVKIW 544 (545)
Q Consensus 510 ~~~~~~h---------~---------~~V~~l~~spd~~~las~-s~Dg~I~iW 544 (545)
...+.+. . .....|++++++..|+.+ ..+..|+.+
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 5544322 1 257899999954444444 445667654
No 269
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.68 E-value=7.8e-05 Score=72.96 Aligned_cols=219 Identities=9% Similarity=0.020 Sum_probs=140.0
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC----CceeeEEec-cCCe
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKC-QSGA 393 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~----~~~~~~~~~-~~~v 393 (545)
+|+.+. ...|+..|+..... ...+. ....+..++|++.+..++++-..++.|+.+++.. ......+.. -...
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~-~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEY-TSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCC-EEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEEC-CCeEEEEECCCcce-Eehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 344443 35689999987654 33333 3456889999998778887877789999999876 222222221 2356
Q ss_pred eEEEEeCCCCEEEEEE-CCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCCCcceE
Q 009059 394 TQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI 469 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--d-g~I~vwd~~~~~~~~~i 469 (545)
..+++.+.++.|+.+. ..+.|.++++........+.........++++|.+.+|+.+. . +.|..+++.... ..
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~---~~ 156 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IY 156 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---EE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC---eE
Confidence 8899998667776664 478999999986544433443445789999999766555554 3 578888875431 11
Q ss_pred EEEeeCCCceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEEEec---cCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 470 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLS---AHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 470 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~---~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
......-.....+++++++..|+.+... +.|..+|+.......+. ........|++. .+.++++-...+.|..+
T Consensus 157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 234 (316)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence 1122234567899999988888877755 59999999865444332 123456788885 34444444455666554
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.67 E-value=2.6e-05 Score=78.74 Aligned_cols=227 Identities=9% Similarity=0.029 Sum_probs=147.0
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec
Q 009059 310 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 389 (545)
Q Consensus 310 ~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~ 389 (545)
|.+..+ ..+|+.+ ....|+.+++..... ..+......+..++|++.+..++++-...+.|+.+++........+..
T Consensus 81 C~~~~~-~~~l~~~-~~~~I~~i~~~~~~~--~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 81 CKALGP-EPVLLFA-NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp EEECSS-CCEEEEE-CBSCEEEECTTSCCC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred ECCccc-cceeEee-cCccceeeccCCCcE--EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 444444 3344444 345688888876543 223333456889999988778887777788999999987654443332
Q ss_pred -cCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCC
Q 009059 390 -QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGS 464 (545)
Q Consensus 390 -~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--d-g~I~vwd~~~~~ 464 (545)
......+++.+.++.|+.+.. .+.|.++++........+.........|+++|.+.+|+... . +.|..+++....
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 234678899987777766654 67899999876544444444446789999999777666665 4 578888876532
Q ss_pred CcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 009059 465 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVK 542 (545)
Q Consensus 465 ~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~ 542 (545)
........-.....++|+|++..|+.+... +.|..+|+...... .+.........|++. .+.++++-...+.|.
T Consensus 237 ---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~ 312 (386)
T 3v65_B 237 ---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSIN 312 (386)
T ss_dssp ---CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred ---cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEE
Confidence 112222334457899999888878877665 48999999765544 333334567788883 344444444455555
Q ss_pred Ec
Q 009059 543 IW 544 (545)
Q Consensus 543 iW 544 (545)
.+
T Consensus 313 ~~ 314 (386)
T 3v65_B 313 SA 314 (386)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 271
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.66 E-value=4.1e-05 Score=76.14 Aligned_cols=227 Identities=9% Similarity=0.049 Sum_probs=144.9
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe
Q 009059 309 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 388 (545)
Q Consensus 309 ~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~ 388 (545)
+|.+..++ .+|+.+ ....|+..++..... ..+......+..++|++.+..++++-...+.|+.+++........+.
T Consensus 37 ~C~~~~~~-~~ll~~-~~~~I~~i~~~g~~~--~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 37 SCKALGPE-PVLLFA-NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp CEEESSSC-CEEEEE-CBSCEEEECTTSCCE--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred cccccccC-ceeEee-cccceEEEeCCCCee--EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 34444442 344444 344588888875443 22222344588999998877888777778899999998765444333
Q ss_pred c-cCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--C-CcEEEEEcCCC
Q 009059 389 C-QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSG 463 (545)
Q Consensus 389 ~-~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--d-g~I~vwd~~~~ 463 (545)
. ......+++.+.++.|+.+.. .+.|.++++........+...-.....++++|.+.+|+... . +.|..+++...
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~ 192 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 192 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC
Confidence 2 234678999987777766654 67999999886544333444446789999999776666555 4 67888887643
Q ss_pred CCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEEE-eccCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 009059 464 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCV 541 (545)
Q Consensus 464 ~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~-~~~h~~~V~~l~~spd~~~las~s~Dg~I 541 (545)
.. .......-.....+++++++..|+.+... +.|..+|+....... +.........|++. .+.++++-...+.|
T Consensus 193 ~~---~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V 268 (349)
T 3v64_C 193 GR---RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSI 268 (349)
T ss_dssp SC---EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred Cc---EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeE
Confidence 21 11112234457899999988878877764 489999998654443 33334567788873 34444443344555
Q ss_pred EE
Q 009059 542 KI 543 (545)
Q Consensus 542 ~i 543 (545)
..
T Consensus 269 ~~ 270 (349)
T 3v64_C 269 NS 270 (349)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 272
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.64 E-value=0.00014 Score=73.70 Aligned_cols=230 Identities=8% Similarity=-0.037 Sum_probs=149.5
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCC---eeeeEeccCcccEE
Q 009059 277 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPD---YSLRTFTGHSTTVM 352 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~-s~dg~I~vwd~~~~~---~~~~~~~~h~~~V~ 352 (545)
+|+.+. ...|+..++........+. ....+..|+|++....|+.+ ...+.|..+++.... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 555544 4688888887765544443 45668899999866655555 456889999987521 11223333445678
Q ss_pred EEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEEC--CCeEEEEECCCCEEEEEec
Q 009059 353 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQ 429 (545)
Q Consensus 353 ~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~ 429 (545)
.+++.+.+..++++-...+.|.+.++........+. .......+++.|.++.|+.+.. .+.|..+++........+.
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 999998767788777778899999998665444443 2345889999998888887764 3789999987654433334
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCCeEEEEeCC
Q 009059 430 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMT 506 (545)
Q Consensus 430 ~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~ 506 (545)
..-.....|++++++..|+.+. .+.|..+|+..... ..+............+++. +..|+.+. ..+.|..+|..
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESS
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcC
Confidence 3446789999999888777776 56899999865422 2222211223445566663 33455554 44588888866
Q ss_pred CCeEE
Q 009059 507 ENKTL 511 (545)
Q Consensus 507 ~~~~~ 511 (545)
+++.+
T Consensus 320 ~G~~~ 324 (400)
T 3p5b_L 320 TGSDV 324 (400)
T ss_dssp SCCCC
T ss_pred CCCce
Confidence 65433
No 273
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.64 E-value=3.6e-05 Score=75.43 Aligned_cols=227 Identities=7% Similarity=0.010 Sum_probs=143.9
Q ss_pred EEEEEeCCCcEEEEEcCCCe--EEEEeccCCccEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeeeEeccCcccEEE
Q 009059 277 LLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 353 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~--~~~~l~~h~~~V~~l~~sp~~~~l-~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~ 353 (545)
+|+.+. ...|+.++++... ....+. ....+..++|.+....| ++-...+.|..+++.........+...-.....
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 83 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence 444443 4678889987653 222222 23456789999855544 454557889999987653212222222345678
Q ss_pred EEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE-eccCCeeEEEEeCCCCEEEEEEC--CCeEEEEECCCCEEEEEecC
Q 009059 354 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQG 430 (545)
Q Consensus 354 l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~ 430 (545)
+++.+.+..++++-...+.|.++++........+ ........+++.|.++.++.+.. .+.|..+++...........
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 8898877778877777889999998754333222 22345789999998788887774 57899999875433222333
Q ss_pred CCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCCeEEEEeCCC
Q 009059 431 HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTE 507 (545)
Q Consensus 431 h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~~ 507 (545)
.-...+.|++++++..|+.+. .+.|..+|+..... ..+ ..........+++.. ..++.+. ..+.|..++..+
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~--~~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAV--VKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE--ECSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTT
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEE--ecCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCC
Confidence 345678999999877777666 66899999865321 222 222344566777753 3344444 445899999866
Q ss_pred CeE
Q 009059 508 NKT 510 (545)
Q Consensus 508 ~~~ 510 (545)
++.
T Consensus 239 G~~ 241 (318)
T 3sov_A 239 GEG 241 (318)
T ss_dssp CCS
T ss_pred CCc
Confidence 653
No 274
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.63 E-value=6.2e-06 Score=87.95 Aligned_cols=252 Identities=9% Similarity=-0.023 Sum_probs=148.6
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEeccCC----ccEEE-EEEcCCCCEEEEEe------CCCeEEEEECCCCCeeeeEecc
Q 009059 278 LATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFTG 346 (545)
Q Consensus 278 latg~~dg~I~lwd~~~~~~~~~l~~h~----~~V~~-l~~sp~~~~l~t~s------~dg~I~vwd~~~~~~~~~~~~~ 346 (545)
|++++.|+.|..+|..+|+.+....... ..+.+ ..+. ++ .+++++ .+|.|+.+|..+++...+....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 7888889999999999999987654221 01111 1111 34 455554 3899999999998863332221
Q ss_pred Ccc------------------------------------cE-EEEEEeCCCCcEEEEEcCC----------------CcE
Q 009059 347 HST------------------------------------TV-MSLDFHPSKEDLLCSCDNN----------------SEI 373 (545)
Q Consensus 347 h~~------------------------------------~V-~~l~~~p~~~~ll~s~s~d----------------g~I 373 (545)
... .+ ..+++.+....++ .+..+ +.|
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy-~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIY-FGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEE-EeCCCCccccCcccCCCccccceE
Confidence 110 01 1345556654444 55433 479
Q ss_pred EEEECCCCceeeEEeccCC----------eeEEEEe-CCC---CEEEEEECCCeEEEEECCCCEEEEEecCCC-------
Q 009059 374 RYWSINNGSCAGVFKCQSG----------ATQMRFQ-PRL---GRILAAAIENYISILDVETQVCRLKLQGHK------- 432 (545)
Q Consensus 374 ~lwd~~~~~~~~~~~~~~~----------v~~l~~s-p~~---~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~------- 432 (545)
..+|.++++.+..+..... ..-+... .++ ..++.++.+|.++++|.++++.+.......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 9999999999988765321 1112222 455 346667789999999999999887654211
Q ss_pred ------CCE--------------------------EEEEEcCCCCEEEEEe-----------------------------
Q 009059 433 ------NQV--------------------------HSVCWNTSGEYLASVS----------------------------- 451 (545)
Q Consensus 433 ------~~I--------------------------~~l~~sp~g~~l~s~s----------------------------- 451 (545)
.++ ..++++|+..++++..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 111 1355666666554431
Q ss_pred -----------CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCC-C
Q 009059 452 -----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-K 518 (545)
Q Consensus 452 -----------dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~-~ 518 (545)
.+.|..||+.+++ .+-..... .....-.+...+..+++++.|+.|+.||.++++++ .+.... .
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~---~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~ 516 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGD---YKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA 516 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCC---EEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred CCcCCcccCCCcCeEEEEECCCCC---EEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc
Confidence 2467777777763 33333211 11111112235567888999999999999999988 443222 1
Q ss_pred CeeEEEEeCCCC-EEEEEe
Q 009059 519 LVSSLAASTVNG-MVASAS 536 (545)
Q Consensus 519 ~V~~l~~spd~~-~las~s 536 (545)
...-+.+..+|+ |+++.+
T Consensus 517 ~~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 517 IGYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp CSCCEEEEETTEEEEEEEE
T ss_pred EeccEEEEeCCEEEEEEEc
Confidence 122345556776 454443
No 275
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.59 E-value=1.6e-05 Score=84.68 Aligned_cols=257 Identities=9% Similarity=0.026 Sum_probs=151.3
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCc----cEE-EEEEcC---CCC-EEEEEe------CCCeEEEEECCCCCe
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----WIT-DVRFSP---SLS-RLATSS------ADRTVRVWDTENPDY 339 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~----~V~-~l~~sp---~~~-~l~t~s------~dg~I~vwd~~~~~~ 339 (545)
+..|+.++.|+.|.-+|.++|+.+........ .+. ...+.. +++ .+++++ .++.|..+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45777888899999999999999876643221 111 111111 233 555554 378999999998875
Q ss_pred eeeEeccCcccE-----------------------------------------EEEEEeCCCCcEEEEEc----------
Q 009059 340 SLRTFTGHSTTV-----------------------------------------MSLDFHPSKEDLLCSCD---------- 368 (545)
Q Consensus 340 ~~~~~~~h~~~V-----------------------------------------~~l~~~p~~~~ll~s~s---------- 368 (545)
.. ........+ ..+++.|....+++..+
T Consensus 197 ~W-~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 197 IW-MRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EE-EEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred Ee-ecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 33 222110000 12455666554443332
Q ss_pred --C-------C----CcEEEEECCCCceeeEEeccCC-------e---eEEEEe-CCCC---EEEEEECCCeEEEEECCC
Q 009059 369 --N-------N----SEIRYWSINNGSCAGVFKCQSG-------A---TQMRFQ-PRLG---RILAAAIENYISILDVET 421 (545)
Q Consensus 369 --~-------d----g~I~lwd~~~~~~~~~~~~~~~-------v---~~l~~s-p~~~---~l~~~~~dg~I~i~d~~~ 421 (545)
. | +.|..+|..+++.+..+..... + .-+... .+++ .++.++.+|.++++|.++
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 1 2 5899999999999988764211 1 112222 3553 567788899999999999
Q ss_pred CEEEEEecCCCC--CE-------------------------------------------EEEEEcCCCCEEEEEe-----
Q 009059 422 QVCRLKLQGHKN--QV-------------------------------------------HSVCWNTSGEYLASVS----- 451 (545)
Q Consensus 422 ~~~~~~~~~h~~--~I-------------------------------------------~~l~~sp~g~~l~s~s----- 451 (545)
++.+..+..... .. ..++++|+..++++..
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 435 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence 998876543210 00 1235566544444322
Q ss_pred -----------------------------CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE
Q 009059 452 -----------------------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 502 (545)
Q Consensus 452 -----------------------------dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i 502 (545)
++.|..||+.+++ .+-...... .+..-.....+..+++++.|+.|+.
T Consensus 436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~---~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A 511 (582)
T 1flg_A 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGK---VVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKA 511 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCC---EEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEE
T ss_pred eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCC---EEEEecCCC-CCcccceEeCCCEEEEECCCCcEEE
Confidence 4578888988873 333333221 2221122224567888999999999
Q ss_pred EeCCCCeEE-EeccCCCCe-eEEEEeCCCC-EEEEEe
Q 009059 503 WNMTENKTL-TLSAHDKLV-SSLAASTVNG-MVASAS 536 (545)
Q Consensus 503 wd~~~~~~~-~~~~h~~~V-~~l~~spd~~-~las~s 536 (545)
||.++++.+ .+......+ .-+.+..+|+ |+++.+
T Consensus 512 ~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 512 FDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEc
Confidence 999999998 443322211 2256667786 454443
No 276
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.59 E-value=3.3e-05 Score=72.69 Aligned_cols=199 Identities=11% Similarity=0.150 Sum_probs=132.0
Q ss_pred EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc--CCeeEEEEeCCCCEEEEEECCCeEEEEECC
Q 009059 343 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVE 420 (545)
Q Consensus 343 ~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~ 420 (545)
.+.+-...+..++|+|+++.|+++...++.|...|.. ++.++.+... .....+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4556667899999999988888888889999999998 8888887654 467889999886544444457889999876
Q ss_pred CCE---EEEEec------CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe-------eCCCceEEEE
Q 009059 421 TQV---CRLKLQ------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------CTGNKFHSCV 483 (545)
Q Consensus 421 ~~~---~~~~~~------~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~-------~~~~~v~~~~ 483 (545)
... .+.... ......-.|+|+|.+..|+++. .+...+|.+........+..+. .....+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 533 222221 1344568999999997777776 4444555553110001111111 1234578999
Q ss_pred EcCCCCEEEEEEcC-CeEEEEeCCCCeEE---Eecc-C------CCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 484 FHPTFPSLLVIGCY-ETLELWNMTENKTL---TLSA-H------DKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 484 ~sp~~~~l~~~~~d-g~I~iwd~~~~~~~---~~~~-h------~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
++|....|++.+.. ..|.++|.... .+ .+.. . -.....|+|.++|++.++ ++-+.++++
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 99987766666655 48999998765 44 2321 1 125688999999985555 676666654
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.58 E-value=6.1e-06 Score=91.03 Aligned_cols=238 Identities=10% Similarity=0.040 Sum_probs=134.2
Q ss_pred CeEEEEEc-CCCCEEEEEeC-CC----cEEEEEcCCC-eEEE-EeccCCccEEEEEEcCCCCEEEEEeCC-----CeEEE
Q 009059 265 KVESCHFS-PDGKLLATGGH-DK----KAVLWCTESF-TVKS-TLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRV 331 (545)
Q Consensus 265 ~V~~l~~s-pdg~~latg~~-dg----~I~lwd~~~~-~~~~-~l~~h~~~V~~l~~sp~~~~l~t~s~d-----g~I~v 331 (545)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....++|+||++.|+....| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57789999 99999886643 22 5999999988 6321 111 113468899999988877665 36888
Q ss_pred EECCCCCee-eeEec-cCcccEEEEEEeCCCCcEEEEEcC--CCcEEEEECCCCc--e--eeEEec-cCCeeEEEEeCCC
Q 009059 332 WDTENPDYS-LRTFT-GHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGS--C--AGVFKC-QSGATQMRFQPRL 402 (545)
Q Consensus 332 wd~~~~~~~-~~~~~-~h~~~V~~l~~~p~~~~ll~s~s~--dg~I~lwd~~~~~--~--~~~~~~-~~~v~~l~~sp~~ 402 (545)
+++.++... ...+. ........+.|+|+++.++++... ...|+++|+.++. . ...... ......+.|+. +
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 888765421 22222 223456788999999888876643 3468889998752 2 211111 12234444443 5
Q ss_pred CEEEEEECC-----CeEEEEECCCCEEEEE-ecCCCC--CEEEEEEcCCCCEEEE-Ee-CC--cEEEEEc-------CCC
Q 009059 403 GRILAAAIE-----NYISILDVETQVCRLK-LQGHKN--QVHSVCWNTSGEYLAS-VS-DE--LVRVWSI-------GSG 463 (545)
Q Consensus 403 ~~l~~~~~d-----g~I~i~d~~~~~~~~~-~~~h~~--~I~~l~~sp~g~~l~s-~s-dg--~I~vwd~-------~~~ 463 (545)
+.|+..+.. ..|..+|+.+...... +..+.. .+..+.+. +..|+. .. ++ .|.++++ ..+
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g 408 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAG 408 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTT
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccccccCC
Confidence 666665543 2688888875211111 222333 34555554 444444 44 67 5666675 222
Q ss_pred CCcceEEEEeeCC-CceEEEEE----cCCCCEE-EEEEcC---CeEEEEeCCCCeEE
Q 009059 464 SKGECIHELSCTG-NKFHSCVF----HPTFPSL-LVIGCY---ETLELWNMTENKTL 511 (545)
Q Consensus 464 ~~~~~i~~~~~~~-~~v~~~~~----sp~~~~l-~~~~~d---g~I~iwd~~~~~~~ 511 (545)
. .+..+.... ..+..+.+ ++++..+ ++.++. ..++.+|+.+++..
T Consensus 409 ~---~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~ 462 (751)
T 2xe4_A 409 T---GLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT 462 (751)
T ss_dssp T---CCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred c---cceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 1 012222111 12233322 3455444 444433 27888898877654
No 278
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.55 E-value=0.00018 Score=72.80 Aligned_cols=219 Identities=9% Similarity=0.015 Sum_probs=142.6
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC----ceeeEEe-ccCCe
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGA 393 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~----~~~~~~~-~~~~v 393 (545)
+|+.+. ...|+..++..... ..+......+..++|++.+..++++-...+.|+.+++... .....+. .....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~--~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEec-cceeEEEccCCcce--eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 444443 46788889886543 2333345678999999987788877777889999998752 2222222 22457
Q ss_pred eEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe---CCcEEEEEcCCCCCcceE
Q 009059 394 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECI 469 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s---dg~I~vwd~~~~~~~~~i 469 (545)
..+++.+.++.|+.+.. .+.|.++++........+.........|+++|.+.+|+... .+.|...++.... ..
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~---~~ 238 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IY 238 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS---CE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc---cE
Confidence 88999986666666654 68999999987655544544455689999999776666555 3588888886532 12
Q ss_pred EEEeeCCCceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEEEecc---CCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 470 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 470 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~~---h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
......-.....+++++++..|+.+... +.|..+|++......+.. ......+|++. .+.++++-...+.|..+
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~ 316 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 316 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEE
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEE
Confidence 2222333568899999988888888764 589999998765543321 23456677773 33344444445566543
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.53 E-value=4.2e-05 Score=78.43 Aligned_cols=233 Identities=14% Similarity=0.116 Sum_probs=139.2
Q ss_pred cEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC---C-cEEEEECCC
Q 009059 307 WITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---S-EIRYWSINN 380 (545)
Q Consensus 307 ~V~~l~~sp~--~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d---g-~I~lwd~~~ 380 (545)
....|+|.|+ ...|+.+...+.|+.+|..++. +..+.........++|++++. ++++.... . .+..++...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~--v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY--VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE--EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE--EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 4568999984 4556666554889999997654 444444556789999999987 66454321 1 233333322
Q ss_pred Cce-eeEEeccCCeeEEEEeCCCCEEEEEE-CCCeEEEEECCCCEEEEEe-c-CCCCCEEEEEEcCCCCEEEEEe--CCc
Q 009059 381 GSC-AGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKL-Q-GHKNQVHSVCWNTSGEYLASVS--DEL 454 (545)
Q Consensus 381 ~~~-~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~~~~~-~-~h~~~I~~l~~sp~g~~l~s~s--dg~ 454 (545)
+.. ...+........+++++..+.|+++. .++.|+.+|..++.....+ . +.......++|+|++++|+.+. .+.
T Consensus 217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 111 11222334567789999545566555 5788999999877652222 1 1223345799999999666665 568
Q ss_pred EEEEEcCC--CCCcceEEEEeeC---------------CCceEEEEE---------cCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 455 VRVWSIGS--GSKGECIHELSCT---------------GNKFHSCVF---------HPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 455 I~vwd~~~--~~~~~~i~~~~~~---------------~~~v~~~~~---------sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
|+.+++.. +.. .....+.+. -.....+++ .+++.++++-...+.|+.++. ++
T Consensus 297 I~~~~~d~~~~~~-~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 297 IYRVDYNRETGKL-AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEBCTTTCCB-CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEeCCCCCccc-CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 99988753 211 111112111 123567888 666664444444568999985 55
Q ss_pred eEEEeccC------------------CCCeeEEEEe-CCCCEEEEEeCCCcEEEc
Q 009059 509 KTLTLSAH------------------DKLVSSLAAS-TVNGMVASASHDKCVKIW 544 (545)
Q Consensus 509 ~~~~~~~h------------------~~~V~~l~~s-pd~~~las~s~Dg~I~iW 544 (545)
....+.+. -.....|+++ +++.++++=..+.+|+.+
T Consensus 375 ~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 375 RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 55544322 1237789999 555555554456677754
No 280
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.53 E-value=0.00013 Score=71.43 Aligned_cols=221 Identities=10% Similarity=0.011 Sum_probs=140.6
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee-EEe-ccCCeeEE
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFK-CQSGATQM 396 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~-~~~-~~~~v~~l 396 (545)
+|+.+ ....|+.+++................+..++|++.+..++++-...+.|+.+++....... .+. .-.....+
T Consensus 6 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYA-NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEE-CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEE-ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 34443 3567999999865421222222234677999999777788777778899999998664222 222 22457789
Q ss_pred EEeCCCCEEEEEE-CCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe---CCcEEEEEcCCCCCcceEEEE
Q 009059 397 RFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHEL 472 (545)
Q Consensus 397 ~~sp~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s---dg~I~vwd~~~~~~~~~i~~~ 472 (545)
++.+.++.|+.+. ..+.|.++++........+.........++++|.+.+|+... .+.|..+++..... . ...
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~--~~~ 161 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-F--III 161 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-E--EEE
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-E--EEE
Confidence 9998667776665 467999999876543333334456789999998766666555 35788888764321 1 112
Q ss_pred eeCCCceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEEEe-ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 473 SCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTL-SAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 473 ~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~-~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
...-.....+++++++..|+.+... +.|..+|+.......+ .........+++.. +.++++-...+.|..+
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILAC 234 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEE
Confidence 2233557899999988888887764 5899999976544433 23445567777753 3344444344555543
No 281
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.52 E-value=4.4e-05 Score=74.57 Aligned_cols=195 Identities=13% Similarity=0.213 Sum_probs=133.0
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC----CC---EEEEEeC---CCeEEEEECCCCCeeeeE
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LS---RLATSSA---DRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~----~~---~l~t~s~---dg~I~vwd~~~~~~~~~~ 343 (545)
...+++.....+-+.+||+ .++.+..+.. +.++.+...|+ ++ ++++... +++|++|++......+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3445565567789999999 7888888864 55777777663 22 2333333 579999977422222444
Q ss_pred ecc------Cc-ccEEEEEE--eCC-CCcEEEEEcCCCcEEEEECC-------CCceeeEEeccCCeeEEEEeCCCCEEE
Q 009059 344 FTG------HS-TTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSIN-------NGSCAGVFKCQSGATQMRFQPRLGRIL 406 (545)
Q Consensus 344 ~~~------h~-~~V~~l~~--~p~-~~~ll~s~s~dg~I~lwd~~-------~~~~~~~~~~~~~v~~l~~sp~~~~l~ 406 (545)
+.. .. ..++.+++ +|. +..+++....+|.+..|++. +.+.++.+.....+..+.+.+..+.|+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 421 11 56777887 664 44456678888999999883 346778888888999999999999999
Q ss_pred EEECCCeEEEEECC-----CCEEEEEec-CC-CCCEEEEEE--cCCCC-EEEEEe--CCcEEEEEcCCCCCcceEEEEe
Q 009059 407 AAAIENYISILDVE-----TQVCRLKLQ-GH-KNQVHSVCW--NTSGE-YLASVS--DELVRVWSIGSGSKGECIHELS 473 (545)
Q Consensus 407 ~~~~dg~I~i~d~~-----~~~~~~~~~-~h-~~~I~~l~~--sp~g~-~l~s~s--dg~I~vwd~~~~~~~~~i~~~~ 473 (545)
++-.+..|..|+.+ +++.+..+. ++ ...+..|++ .++++ ||++++ ++.+.+||.... ...+..+.
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~--~~~vg~f~ 272 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK--NKYVADFR 272 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT--CCEEEEEE
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC--CcEEEEEE
Confidence 99999888888866 355665543 22 246888887 45555 666666 779999999622 14455543
No 282
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.49 E-value=0.00042 Score=65.10 Aligned_cols=201 Identities=11% Similarity=0.094 Sum_probs=134.4
Q ss_pred EeecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCeEEEEec-cCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 257 QLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~l-atg~~dg~I~lwd~~~~~~~~~l~-~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
+.+.+-.+.+..++|+|++..| ++...++.|...|.. ++.+..+. +-......|++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 4566777789999999976654 556778899999987 78777763 22356788999988887777667788999987
Q ss_pred CCCCe--eeeEec------cCcccEEEEEEeCCCCcEEEEEcCCC-cEEEEEC-CCCceeeEEe--------ccCCeeEE
Q 009059 335 ENPDY--SLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNNS-EIRYWSI-NNGSCAGVFK--------CQSGATQM 396 (545)
Q Consensus 335 ~~~~~--~~~~~~------~h~~~V~~l~~~p~~~~ll~s~s~dg-~I~lwd~-~~~~~~~~~~--------~~~~v~~l 396 (545)
..... .+.... ........++|+|.+..++++...+. .|+.|+- .....+..+. .-..+..+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 65442 112221 13345789999999878886665554 4555551 1111122221 12357899
Q ss_pred EEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCC---------CCEEEEEEcCCCCEEEEEeCCcEEEEE
Q 009059 397 RFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVWS 459 (545)
Q Consensus 397 ~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~---------~~I~~l~~sp~g~~l~s~sdg~I~vwd 459 (545)
+++|..+.+++.+. ...|.++|.... .+..+.-.. ...-.|+|.++|++++++..+.+++|.
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFT 250 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEE
Confidence 99998887777665 678999997754 444333221 367899999999977665455666664
No 283
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.48 E-value=7.7e-05 Score=76.37 Aligned_cols=234 Identities=11% Similarity=0.142 Sum_probs=141.0
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC-C----eEEEEECCCCC
Q 009059 265 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R----TVRVWDTENPD 338 (545)
Q Consensus 265 ~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d-g----~I~vwd~~~~~ 338 (545)
....|+|+| ++..|.++...+.|+.+|...+....... .......|+|++++++|+.+... + .+.+++.. +.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence 457899998 45566666555889999998766554443 45568899999999966666542 1 34444433 22
Q ss_pred ee-eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc--CCeeEEEEeCCCCEEEEEEC-CCeE
Q 009059 339 YS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAI-ENYI 414 (545)
Q Consensus 339 ~~-~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~~~~~-dg~I 414 (545)
.. ...+. .......++++|++..++++-..++.|+.++...+......... .....++|+|++++++++.. .+.|
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 21 12222 12346778899955567767667889999999876653333322 34788999999996666654 6789
Q ss_pred EEEECCC--CEE--EEEecCC---------------CCCEE-EEEEc--------CCCCEEEEEe-CCcEEEEEcCCCCC
Q 009059 415 SILDVET--QVC--RLKLQGH---------------KNQVH-SVCWN--------TSGEYLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 415 ~i~d~~~--~~~--~~~~~~h---------------~~~I~-~l~~s--------p~g~~l~s~s-dg~I~vwd~~~~~~ 465 (545)
..++... +.. +..+.+. -.... .++.. ++|.++++-. .+.|+.++. .+
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G-- 371 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG-- 371 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS--
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC--
Confidence 9987653 221 1112111 01233 45553 3355555544 568888873 23
Q ss_pred cceEEEEeeC------------------CCceEEEEEcCCCCEEEEEEc-CCeEEEEeCC
Q 009059 466 GECIHELSCT------------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 506 (545)
Q Consensus 466 ~~~i~~~~~~------------------~~~v~~~~~sp~~~~l~~~~~-dg~I~iwd~~ 506 (545)
.+..+.+. -.....+++++++..|+++.. ...|+.++++
T Consensus 372 --~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 372 --RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp --EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred --cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 22222221 124788899985445555554 4477777654
No 284
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.46 E-value=0.00031 Score=77.13 Aligned_cols=230 Identities=8% Similarity=-0.031 Sum_probs=147.7
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCC---eeeeEeccCcccEE
Q 009059 277 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPD---YSLRTFTGHSTTVM 352 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~-t~s~dg~I~vwd~~~~~---~~~~~~~~h~~~V~ 352 (545)
+|+.+. ...|+..++........+. ....+..|+|.+....|+ +-...+.|+.+++.... .....+........
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 444443 4578888887655444443 345678999998555554 44556789999987531 11223332345677
Q ss_pred EEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEEC--CCeEEEEECCCCEEEEEec
Q 009059 353 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQ 429 (545)
Q Consensus 353 ~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~ 429 (545)
.|++.+.+..|+++-...+.|.+.++........+. .......|++.|.+++|+.+.. .+.|.+.++........+.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 899998888888888888999999998554433333 2345889999998888887764 2689999998665544444
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-CeEEEEeCC
Q 009059 430 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMT 506 (545)
Q Consensus 430 ~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~ 506 (545)
..-.....|++++.+..|+.+. .+.|..+++..... ..+......-.....+++. +.+|+.+... +.|...|..
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCC
Confidence 4446789999998877777766 55899999865422 2222111112334556653 3456666654 588888876
Q ss_pred CCeEE
Q 009059 507 ENKTL 511 (545)
Q Consensus 507 ~~~~~ 511 (545)
+++.+
T Consensus 632 tG~~~ 636 (791)
T 3m0c_C 632 TGSDV 636 (791)
T ss_dssp TCCCC
T ss_pred CCcce
Confidence 66443
No 285
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.39 E-value=0.00019 Score=74.06 Aligned_cols=232 Identities=11% Similarity=0.095 Sum_probs=138.6
Q ss_pred cEEEEEEcC-CCCEEEEEe-CCCeEEEEECCCCCeeeeEecc----CcccEEEEEE-------eCCCCcEEEEEcCCC--
Q 009059 307 WITDVRFSP-SLSRLATSS-ADRTVRVWDTENPDYSLRTFTG----HSTTVMSLDF-------HPSKEDLLCSCDNNS-- 371 (545)
Q Consensus 307 ~V~~l~~sp-~~~~l~t~s-~dg~I~vwd~~~~~~~~~~~~~----h~~~V~~l~~-------~p~~~~ll~s~s~dg-- 371 (545)
....|+|.| +...|+.+. ..+.|++.|+..+.. ..+.. .......|+| ++++..++++...++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v--~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML--SSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE--EEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE--EEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 467899998 344455544 446788899887553 33321 1235899999 999887776655442
Q ss_pred ----cEEEEECCC-Ccee-----eEEeccCCeeEEEEeCCCCEEEEEE-CCCeEEEEECC-------CCEE---------
Q 009059 372 ----EIRYWSINN-GSCA-----GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVE-------TQVC--------- 424 (545)
Q Consensus 372 ----~I~lwd~~~-~~~~-----~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~-------~~~~--------- 424 (545)
.|.+++... +... ..+........++++|+++.|+++. .++.|+.+|+. ++..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred ccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266776443 2221 2232234567889999767776666 47789999987 4432
Q ss_pred -----EEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcce--EEEEeeC---------------CCceE
Q 009059 425 -----RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC--IHELSCT---------------GNKFH 480 (545)
Q Consensus 425 -----~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~--i~~~~~~---------------~~~v~ 480 (545)
+... +.......|+|+|+|++|+.+. .+.|+.++...... .. ...+.+. -....
T Consensus 298 g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~-~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 298 NTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK-EFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp TTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT-EECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc-eecccEEecCCCCCCcccCCcccccccCCCe
Confidence 2222 2334568999999999766665 56898876543211 10 0122111 01234
Q ss_pred -EEEEc-------CCCCEEEEEE-cCCeEEEEeCCCCeEEEeccC------------------------CCCeeEEEEeC
Q 009059 481 -SCVFH-------PTFPSLLVIG-CYETLELWNMTENKTLTLSAH------------------------DKLVSSLAAST 527 (545)
Q Consensus 481 -~~~~s-------p~~~~l~~~~-~dg~I~iwd~~~~~~~~~~~h------------------------~~~V~~l~~sp 527 (545)
.++.. .++. |+++. ....|+.++ .++...++.+. -.....|++++
T Consensus 376 ~gv~vd~~~~~~~~~g~-lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYD-FYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEEEEECTTCCSSCCEE-EEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEEEEccccccccCCCe-EEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 44454 3455 55554 456999999 45655554332 12367899999
Q ss_pred C-CCEEEEEeCCCcEEEc
Q 009059 528 V-NGMVASASHDKCVKIW 544 (545)
Q Consensus 528 d-~~~las~s~Dg~I~iW 544 (545)
+ +.++++=..+.+|+.+
T Consensus 454 ~~g~lyVaD~~N~rIrki 471 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTI 471 (496)
T ss_dssp TTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEEeCCCCEEEEE
Confidence 7 5555544456677765
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.38 E-value=0.00023 Score=72.85 Aligned_cols=234 Identities=11% Similarity=0.063 Sum_probs=138.6
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC----Ce-EEEEECCCC
Q 009059 265 KVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RT-VRVWDTENP 337 (545)
Q Consensus 265 ~V~~l~~spd--g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d----g~-I~vwd~~~~ 337 (545)
....++|+|+ ...|..+...+.|+.++..+++...... .......|+|+++++ |+.+... .. +...+....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 4668999984 3455555444899999998877665543 445689999999999 4444432 12 333333221
Q ss_pred CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeE-Eecc--CCeeEEEEeCCCCEEEEEEC-CCe
Q 009059 338 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKCQ--SGATQMRFQPRLGRILAAAI-ENY 413 (545)
Q Consensus 338 ~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~-~~~~--~~v~~l~~sp~~~~l~~~~~-dg~ 413 (545)
......+. .-.....++++|+...++++-..++.|+.+|..++..... +... .....++|+|++++|+++.. .+.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 11011111 2234567889995456665666678899999987766322 2221 12346999999987776665 678
Q ss_pred EEEEECC--CCEE--EEEecCC---------------CCCEEEEEE---------cCCCCEEEEEe-CCcEEEEEcCCCC
Q 009059 414 ISILDVE--TQVC--RLKLQGH---------------KNQVHSVCW---------NTSGEYLASVS-DELVRVWSIGSGS 464 (545)
Q Consensus 414 I~i~d~~--~~~~--~~~~~~h---------------~~~I~~l~~---------sp~g~~l~s~s-dg~I~vwd~~~~~ 464 (545)
|+.++.. ++.. ...+.+. -.....+++ .++|.++++-. .+.|+.++. ++
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G- 374 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG- 374 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS-
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC-
Confidence 9998865 2311 1111111 124677999 67777666655 668998874 22
Q ss_pred CcceEEEEeeC------------------CCceEEEEEcCCCCEEEEEEc-CCeEEEEeCC
Q 009059 465 KGECIHELSCT------------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 506 (545)
Q Consensus 465 ~~~~i~~~~~~------------------~~~v~~~~~sp~~~~l~~~~~-dg~I~iwd~~ 506 (545)
.+.++.+. -.....++++|....|+++.. .+.|+.++++
T Consensus 375 ---~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 ---RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ---EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ---CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 22333221 123567888843333555443 4477776654
No 287
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.34 E-value=4.2e-05 Score=84.31 Aligned_cols=190 Identities=13% Similarity=0.112 Sum_probs=117.6
Q ss_pred cEEEEEEe-CCCCcEEEEEcCCC----cEEEEECCCC-ceee-EEeccCCeeEEEEeCCCCEEEEEECC-----CeEEEE
Q 009059 350 TVMSLDFH-PSKEDLLCSCDNNS----EIRYWSINNG-SCAG-VFKCQSGATQMRFQPRLGRILAAAIE-----NYISIL 417 (545)
Q Consensus 350 ~V~~l~~~-p~~~~ll~s~s~dg----~I~lwd~~~~-~~~~-~~~~~~~v~~l~~sp~~~~l~~~~~d-----g~I~i~ 417 (545)
.+....|+ |+|+.++++.+.+| .|+++|+.++ +.+. .+. .....+.|+|+++.|+....+ ..|+++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--GTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--EECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--CceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 57789999 99988887776554 4999999988 6332 121 123568899999888887765 368889
Q ss_pred ECCCCE--EEEEec-CCCCCEEEEEEcCCCCEEEEEe-C---CcEEEEEcCCCCCcce-EEEE-eeCCCceEEEEEcCCC
Q 009059 418 DVETQV--CRLKLQ-GHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGEC-IHEL-SCTGNKFHSCVFHPTF 488 (545)
Q Consensus 418 d~~~~~--~~~~~~-~h~~~I~~l~~sp~g~~l~s~s-d---g~I~vwd~~~~~~~~~-i~~~-~~~~~~v~~~~~sp~~ 488 (545)
++.++. ....+. ........+.|+|||++|+... + ..|+++|+.++.. .. +..+ .........+.|+. +
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~-~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA-HNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT-CCCEEESSCCCTTCCEEEEEET-T
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC-CceeEEeecCCCCceEEEeeee-C
Confidence 998753 122222 2334567889999999888765 2 2788899876521 11 1222 22334455555554 4
Q ss_pred CEEEEEEc-C----CeEEEEeCCC-CeEEE-eccCCC--CeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 489 PSLLVIGC-Y----ETLELWNMTE-NKTLT-LSAHDK--LVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 489 ~~l~~~~~-d----g~I~iwd~~~-~~~~~-~~~h~~--~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
..|+..+. + ..|..+|+.+ +.... +..|.. .+..+.+. .+.++++...||..+||
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence 44544443 3 2788888875 23223 333443 34555554 23455667777766654
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.31 E-value=0.00095 Score=73.34 Aligned_cols=216 Identities=9% Similarity=0.029 Sum_probs=139.7
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC----ceeeEEe-ccCCe
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGA 393 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~----~~~~~~~-~~~~v 393 (545)
+|+.+ ....|+..++..... ..+......+..|+|++....++++-...+.|+.+++... .....+. .....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~--~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccc-cccceeEeeccCCcc--eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 44443 445688888876543 2333345678899999977778877777888999998753 2222232 22457
Q ss_pred eEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCCCcceE
Q 009059 394 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI 469 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--d-g~I~vwd~~~~~~~~~i 469 (545)
..|++.+.++.|+.+.. .+.|.++++........+.........|+++|.+.+|+... . +.|.+.++... ...
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~---~~~ 550 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIY 550 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEE
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---ceE
Confidence 78999988777777665 68999999987655444444556789999999866666555 3 57888888653 222
Q ss_pred EEEeeCCCceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEEEec-c--CCCCeeEEEEeCCCCEEEEEe-CCCcEE
Q 009059 470 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLS-A--HDKLVSSLAASTVNGMVASAS-HDKCVK 542 (545)
Q Consensus 470 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~-~--h~~~V~~l~~spd~~~las~s-~Dg~I~ 542 (545)
..+...-.....|++++....|+.+... +.|..+++.......+. . .-....+|++. +..|+.+. ..+.|.
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF 626 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEE
Confidence 2233334678899999888888888654 48999999876655332 2 22345566664 33444444 334444
No 289
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.29 E-value=3.3e-05 Score=83.79 Aligned_cols=228 Identities=7% Similarity=-0.028 Sum_probs=128.2
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEECCCCCeeee-Ee-ccCcccEEEEEEeCCCCcEEEEEc-CCCcEE
Q 009059 310 DVRFSP-SLSRLATSSADR-----------TVRVWDTENPDYSLR-TF-TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIR 374 (545)
Q Consensus 310 ~l~~sp-~~~~l~t~s~dg-----------~I~vwd~~~~~~~~~-~~-~~h~~~V~~l~~~p~~~~ll~s~s-~dg~I~ 374 (545)
.+++.+ ++++++.|+.+. .+.+||..+...... .+ ..+.....++++..++. +++.|+ .+..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceE
Confidence 456677 888888887643 688999987764221 22 12333344567777765 555665 556899
Q ss_pred EEECCCCceeeEEecc--CCeeEEEEeCCCCEEEEEE-CC-----CeEEEEECCCCEEEEEe----cCCCCCEEEEEEcC
Q 009059 375 YWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAA-IE-----NYISILDVETQVCRLKL----QGHKNQVHSVCWNT 442 (545)
Q Consensus 375 lwd~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~~~~-~d-----g~I~i~d~~~~~~~~~~----~~h~~~I~~l~~sp 442 (545)
+||..+.+....-... ..-..+++.+++..+++|+ .+ ..+.+||..+.+-...- ......-....+..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 9999877544332221 1234556667878888887 34 57999999887643320 00000000011223
Q ss_pred CCCEEEEEe-C---------CcEEEEEcCCCCCcceEEEEee------CCCceEEEEEcC-CCCEEEEEEcCC-------
Q 009059 443 SGEYLASVS-D---------ELVRVWSIGSGSKGECIHELSC------TGNKFHSCVFHP-TFPSLLVIGCYE------- 498 (545)
Q Consensus 443 ~g~~l~s~s-d---------g~I~vwd~~~~~~~~~i~~~~~------~~~~v~~~~~sp-~~~~l~~~~~dg------- 498 (545)
++..++.++ + ..+..||..+..-......... ....-.++.|.. +++.+++|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 444444443 3 3578888876532111111111 011223444443 667677776432
Q ss_pred ----eEEEEeCCCCeEEEec---cCCCC-eeEEEEeCCCCEEEEEeCC
Q 009059 499 ----TLELWNMTENKTLTLS---AHDKL-VSSLAASTVNGMVASASHD 538 (545)
Q Consensus 499 ----~I~iwd~~~~~~~~~~---~h~~~-V~~l~~spd~~~las~s~D 538 (545)
.|.+||..+.....+. -+... -.++...|++++++.|+.+
T Consensus 429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 6889998887766442 12222 2345667899999999865
No 290
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.25 E-value=0.0013 Score=70.66 Aligned_cols=218 Identities=9% Similarity=0.016 Sum_probs=143.8
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEE
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMR 397 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~ 397 (545)
+|+.+ ....|+..+++............-..+..++|++.+..++++-..++.|+.+++........+... .....++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44444 456799999986543222112233568899999988888878778899999999865444444322 3577899
Q ss_pred EeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe---CCcEEEEEcCCCCCcceEEEEe
Q 009059 398 FQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELS 473 (545)
Q Consensus 398 ~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s---dg~I~vwd~~~~~~~~~i~~~~ 473 (545)
+.+.++.|+.+.. .+.|.+.++........+...-.....|+++|...+|+... .+.|...++..... ..+ .
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l---~ 162 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTL---V 162 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEE---E
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEE---E
Confidence 9987777777665 67899999976543333333445689999998655555554 34788888765422 222 2
Q ss_pred eCCCceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEe-CCCcEEE
Q 009059 474 CTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKI 543 (545)
Q Consensus 474 ~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s-~Dg~I~i 543 (545)
........+++++++..|+.+... +.|..+|+.......+........+|++.. + .|+.+. ..+.|..
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~-~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-D-YIYWTDWSRRSIER 232 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-T-EEEEEETTTTEEEE
T ss_pred CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-C-EEEEecCCCCEEEE
Confidence 245678899999988888888765 489999997755443333444566788764 3 444444 3555554
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=0.00064 Score=70.04 Aligned_cols=241 Identities=14% Similarity=0.140 Sum_probs=143.8
Q ss_pred CeEEEEEcC-CCC-EEEEEeCCCcEEEEEcCCCeEEEEeccC---CccEEEEEE-------cCCCCEEEEEeCCC-----
Q 009059 265 KVESCHFSP-DGK-LLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRF-------SPSLSRLATSSADR----- 327 (545)
Q Consensus 265 ~V~~l~~sp-dg~-~latg~~dg~I~lwd~~~~~~~~~l~~h---~~~V~~l~~-------sp~~~~l~t~s~dg----- 327 (545)
....|+|+| +.. ++++-...+.|++.|.+.+.....+... ......|+| ++++.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 344 4444444467899998887776555432 235899999 99999777766553
Q ss_pred --eEEEEECCC-CCee----eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC-------CCce----------
Q 009059 328 --TVRVWDTEN-PDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-------NGSC---------- 383 (545)
Q Consensus 328 --~I~vwd~~~-~~~~----~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~-------~~~~---------- 383 (545)
.|.+++... +... ...+.. -.....++++|++..|+++...++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266665443 1221 022221 12456788899777888788888999999997 5543
Q ss_pred -e-eEEec--cCCeeEEEEeCCCCEEEEEEC-CCeEEEEEC--CCCEE--EEEecCC---C------------CCEE-EE
Q 009059 384 -A-GVFKC--QSGATQMRFQPRLGRILAAAI-ENYISILDV--ETQVC--RLKLQGH---K------------NQVH-SV 438 (545)
Q Consensus 384 -~-~~~~~--~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~--~~~~~--~~~~~~h---~------------~~I~-~l 438 (545)
. ..+.. ......++|+|+++.++++.. .+.|+.++. .++.. ...+.+. . .... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 1 11222 233678999999997666654 678988654 44432 0122111 1 1244 45
Q ss_pred EEc-------CCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC------------------------CCceEEEEEcC
Q 009059 439 CWN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT------------------------GNKFHSCVFHP 486 (545)
Q Consensus 439 ~~s-------p~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~------------------------~~~v~~~~~sp 486 (545)
+.. .++.++++-. .++|+.++. ++ .+.++.+. -.....+++++
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G----~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG----IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC----BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEeC-CC----CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 554 4555555544 668999983 33 23333322 12356788888
Q ss_pred CCCEEEEEEcC-CeEEEEeCCCCeEE
Q 009059 487 TFPSLLVIGCY-ETLELWNMTENKTL 511 (545)
Q Consensus 487 ~~~~l~~~~~d-g~I~iwd~~~~~~~ 511 (545)
+...|+++... ..|+.++++.....
T Consensus 454 ~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp TTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCCEEEEEeCCCCEEEEEECCCCccc
Confidence 63335555544 47888877665443
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.18 E-value=0.00091 Score=71.63 Aligned_cols=228 Identities=8% Similarity=-0.002 Sum_probs=139.3
Q ss_pred EEEEEeCCCcEEEEEcCCCe-EEEEeccCCccEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeeeEeccCcccEEEE
Q 009059 277 LLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSL 354 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~-~~~~l~~h~~~V~~l~~sp~~~~l~t~s~-dg~I~vwd~~~~~~~~~~~~~h~~~V~~l 354 (545)
+|+-+ ....|+..++.... ....+...-..+..|+|++.+..|+.+.. .+.|..+++.........+...-.....+
T Consensus 11 ~~~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~Gl 89 (619)
T 3s94_A 11 LLLYA-NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 89 (619)
T ss_dssp CEEEE-CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEE
T ss_pred eEEEe-ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeE
Confidence 34443 35678888887543 22222233455789999987666665544 67899999875432122333333578899
Q ss_pred EEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE-eccCCeeEEEEeCCCCEEEEEEC--CCeEEEEECCCCEEEEEecCC
Q 009059 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGH 431 (545)
Q Consensus 355 ~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~h 431 (545)
++.+.+..++++-...+.|.+.++........+ ..-.....+++.|.++.|+.+.. .+.|...++............
T Consensus 90 AvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~ 169 (619)
T 3s94_A 90 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE 169 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred EEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCC
Confidence 999987888878778899999999855433333 22345788999998888887774 467888887654333333334
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc-CCeEEEEeCCCC
Q 009059 432 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 508 (545)
Q Consensus 432 ~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~ 508 (545)
-...+.|++++++..|+.+. .+.|..+|+........+ .........+++..+ .|+.+.. .+.|...|..++
T Consensus 170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~---~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV---KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSC
T ss_pred CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEE---eCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCC
Confidence 45789999999877777766 568888888653221111 111222345666555 4555554 458888888766
Q ss_pred eE
Q 009059 509 KT 510 (545)
Q Consensus 509 ~~ 510 (545)
+.
T Consensus 245 ~~ 246 (619)
T 3s94_A 245 EG 246 (619)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 293
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.17 E-value=0.0045 Score=66.22 Aligned_cols=276 Identities=8% Similarity=-0.023 Sum_probs=160.0
Q ss_pred CCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCee
Q 009059 264 SKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYS 340 (545)
Q Consensus 264 ~~V~~l~~spdg~~l-atg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~--dg~I~vwd~~~~~~~ 340 (545)
.....+++.+.+..| ++-...+.|.+.++........+...-.....|++.|.+.+|+.+.. .+.|...+++....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~- 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR- 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-
Confidence 568899999965554 44456789999998764433333344455778999997666666554 35677777764332
Q ss_pred eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEE-CCCeEEEEE
Q 009059 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA-IENYISILD 418 (545)
Q Consensus 341 ~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d 418 (545)
.......-.....|++.+++..++++-...+.|..+|+.......... .......+++..+ .++.+. ..+.|...|
T Consensus 163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d 240 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACN 240 (619)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEE
T ss_pred EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEE
Confidence 222223345688999999877888777777889999987543332222 1122445666544 555554 467888888
Q ss_pred CCCCEEEEEecC-----------CC---------------------------CCEEEEEE-----cCC--------CCEE
Q 009059 419 VETQVCRLKLQG-----------HK---------------------------NQVHSVCW-----NTS--------GEYL 447 (545)
Q Consensus 419 ~~~~~~~~~~~~-----------h~---------------------------~~I~~l~~-----sp~--------g~~l 447 (545)
..+++....+.. |. ....|.|- .++ ..+|
T Consensus 241 ~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~L 320 (619)
T 3s94_A 241 KYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELL 320 (619)
T ss_dssp SSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEE
T ss_pred CCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEE
Confidence 876643322211 00 01112110 011 1245
Q ss_pred EEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc-CCeEEEEeCCCCeEEE-eccCCCCeeEEEE
Q 009059 448 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLT-LSAHDKLVSSLAA 525 (545)
Q Consensus 448 ~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~~~~-~~~h~~~V~~l~~ 525 (545)
+.+..+.|+..++...........+. .-..+..++|++.+..|+.+.. .+.|+.+++.+..... +...-..+..|++
T Consensus 321 l~~~~~~i~~i~l~~~~~~~~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAv 399 (619)
T 3s94_A 321 LLARRTDLRRISLDTPDFTDIVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAV 399 (619)
T ss_dssp EEEESSCEEEEESSSTTCCCEECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred EEEcccceEEEecCCCccceeEEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEE
Confidence 55556677777776543211111111 1245778999997777777765 5689999987754433 3233356778888
Q ss_pred eCCCCEEEEEe-CCCcEEE
Q 009059 526 STVNGMVASAS-HDKCVKI 543 (545)
Q Consensus 526 spd~~~las~s-~Dg~I~i 543 (545)
...++.|+.+. ..+.|.+
T Consensus 400 D~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 400 DWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp ETTTTEEEEEETTTTEEEE
T ss_pred ecccCcEEEEeCCCCcEEE
Confidence 87555444443 3455544
No 294
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.16 E-value=0.0051 Score=65.91 Aligned_cols=224 Identities=8% Similarity=-0.022 Sum_probs=149.7
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEec-cCCccEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeeeeEeccCcccEEEE
Q 009059 277 LLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSL 354 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~~~~~l~-~h~~~V~~l~~sp~~~~l~t~-s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l 354 (545)
+|+.+ ....|+..++++......+. ..-..+..|+|.+....|+.+ ..++.|..+++..... ...+.........+
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcceE
Confidence 55554 35689999988655433332 223468899999866655544 5578999999875432 22233223457789
Q ss_pred EEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE-eccCCeeEEEEeCCCCEEEEEEC--CCeEEEEECCCCEEEEEecCC
Q 009059 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGH 431 (545)
Q Consensus 355 ~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~h 431 (545)
++.+.+..++++-...+.|.+.++........+ ..-.....+++.|..+.|+.+.. .+.|...++.......... .
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~ 164 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-N 164 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-S
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-C
Confidence 998887788877777889999999754432222 22345789999998788887764 5688888887554333333 4
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc-CCeEEEEeCCCC
Q 009059 432 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 508 (545)
Q Consensus 432 ~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~ 508 (545)
-.....|++++++..|+.+. .+.|..+|+..... . .+.........+++.. ..|+.+.. .+.|...|..++
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~---v~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-E---VIADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E---EEEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTC
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-E---EeeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCC
Confidence 56789999999887777776 66899999976432 2 2233344556777765 34666665 568999987665
Q ss_pred e
Q 009059 509 K 509 (545)
Q Consensus 509 ~ 509 (545)
+
T Consensus 239 ~ 239 (628)
T 4a0p_A 239 Q 239 (628)
T ss_dssp C
T ss_pred C
Confidence 4
No 295
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.15 E-value=0.00074 Score=67.03 Aligned_cols=226 Identities=8% Similarity=0.063 Sum_probs=122.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE--EEEec---cCCccEEEEEEcCC---CCEEEEEeC-C-----Ce
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE---EHTQWITDVRFSPS---LSRLATSSA-D-----RT 328 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~--~~~l~---~h~~~V~~l~~sp~---~~~l~t~s~-d-----g~ 328 (545)
-.....++|.|||+++++ ..++.|++++ .++. +..+. ........|+|+|+ +..|+.+.. . ..
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345778999999986655 5669999998 3432 22221 22456899999998 555555443 2 67
Q ss_pred EEEEECCCCCe-----eeeEec---cCcccEEEEEEeCCCCcEEEEEcC-------------CCcEEEEECCCC------
Q 009059 329 VRVWDTENPDY-----SLRTFT---GHSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG------ 381 (545)
Q Consensus 329 I~vwd~~~~~~-----~~~~~~---~h~~~V~~l~~~p~~~~ll~s~s~-------------dg~I~lwd~~~~------ 381 (545)
|..|+...... .+..+. +.......++|.|++. |+++.+. .|.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 88888764321 111122 1112346899999984 5444321 245666665431
Q ss_pred ------ceeeEEe-ccCCeeEEEEeCCCCEEEEEECC-Ce--------EEEEECCC----------------CEEEEEec
Q 009059 382 ------SCAGVFK-CQSGATQMRFQPRLGRILAAAIE-NY--------ISILDVET----------------QVCRLKLQ 429 (545)
Q Consensus 382 ------~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~d-g~--------I~i~d~~~----------------~~~~~~~~ 429 (545)
.....+. .......++|+|+.+.|+++... +. |.+..... ..++..+.
T Consensus 186 f~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~ 265 (352)
T 2ism_A 186 FLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP 265 (352)
T ss_dssp TTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred ccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence 1111221 12336778999954556655542 22 33332211 01222232
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCc---ceEEEEeeCCCceEEEEEcCCCCEEEEE
Q 009059 430 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG---ECIHELSCTGNKFHSCVFHPTFPSLLVI 494 (545)
Q Consensus 430 ~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~---~~i~~~~~~~~~v~~~~~sp~~~~l~~~ 494 (545)
+......++| .+|.++++.. .+.|...++...... .....+......+..+++.|+|..+++.
T Consensus 266 -~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 266 -QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp -TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred -CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 2334567777 4566655544 567888877643210 0112222334678899999999754444
No 296
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.12 E-value=0.0013 Score=64.42 Aligned_cols=231 Identities=11% Similarity=0.052 Sum_probs=130.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec---cCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CC
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PD 338 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~---~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~-~~ 338 (545)
...+.++.|.+ +..++ ++..+.|.. ..+.++.-..+. .+...+..|.+.+++..++++ .+|.| |...+ +.
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~ 152 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGK 152 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE--EEESSTTS
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccE--EEEcCCCC
Confidence 34688899986 44444 445665443 333343332222 234567888887777666655 45543 22222 22
Q ss_pred eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEE-EEC--CCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEE
Q 009059 339 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY-WSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 339 ~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~l-wd~--~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
.-......+...+..+.+.+++ .+++.+. +|.++. +|- .+.+.+. ......+..+.+.+++ .+++++.+|.++
T Consensus 153 tW~~~~~~~~~~~~~~~~~~~~-~~~~~g~-~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g-~~~~~~~~G~~~ 228 (327)
T 2xbg_A 153 NWQALVQEAIGVMRNLNRSPSG-EYVAVSS-RGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDG-RLWMIVNGGKIA 228 (327)
T ss_dssp SEEEEECSCCCCEEEEEECTTS-CEEEEET-TSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTS-CEEEEETTTEEE
T ss_pred CCEEeecCCCcceEEEEEcCCC-cEEEEEC-CCcEEEEeCCCCCceeECC-CCCCCccceeEECCCC-CEEEEeCCceEE
Confidence 1122233455678999999875 4554554 454444 332 1222221 1223467888888885 566777788888
Q ss_pred EEECCCCEEEEEecC----CCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEE
Q 009059 416 ILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 491 (545)
Q Consensus 416 i~d~~~~~~~~~~~~----h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l 491 (545)
+.+...++.-..+.. +...+.++.+.+++.+++++.++.| ++....+.....+.........+..+.|.+++ .+
T Consensus 229 ~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~ 306 (327)
T 2xbg_A 229 FSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QG 306 (327)
T ss_dssp EEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EE
T ss_pred EecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ce
Confidence 775333433322221 2245899999998898888888876 45555553322211111123567888887554 47
Q ss_pred EEEEcCCeEEEEeC
Q 009059 492 LVIGCYETLELWNM 505 (545)
Q Consensus 492 ~~~~~dg~I~iwd~ 505 (545)
++++.+|.|.-++-
T Consensus 307 ~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 307 FILGQKGILLRYVT 320 (327)
T ss_dssp EEECSTTEEEEECC
T ss_pred EEEcCCceEEEEcC
Confidence 78888888777653
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.07 E-value=9.3e-06 Score=88.53 Aligned_cols=225 Identities=8% Similarity=-0.027 Sum_probs=135.0
Q ss_pred CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEe-CCCeEEEEECCCC---CeeeeEeccCcccEEEEEEeCC
Q 009059 284 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPS 359 (545)
Q Consensus 284 dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s-~dg~I~vwd~~~~---~~~~~~~~~h~~~V~~l~~~p~ 359 (545)
.+.|++.++.+.+....+.. ...+..|+|.+.+..|+.+. ..+.|+.+++... ......+.........|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 46788888877665544433 34567899998766666654 4578999998751 1112222212234567888866
Q ss_pred CCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCCEEEEEEC--CCeEEEEECCCCEEEEEecCCCCCEE
Q 009059 360 KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVH 436 (545)
Q Consensus 360 ~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~h~~~I~ 436 (545)
+..|+++-...+.|.++++........+.. ......+++.|.+++|+.+.. .+.|.++++........+...-...+
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 543 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence 667776666678899999876544333322 244678899997777776654 26888888764332222222234567
Q ss_pred EEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCCeEEEEeCCCCeEEE
Q 009059 437 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLT 512 (545)
Q Consensus 437 ~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~~ 512 (545)
.|+|+|++..|+.+. .+.|.++++..... ..+............+++..+ .|+.+. ..+.|..+|..+++.+.
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEE
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceE
Confidence 899999876665555 56899999864321 222111111223345555443 455544 44689999988877663
No 298
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.03 E-value=0.0057 Score=60.60 Aligned_cols=229 Identities=10% Similarity=0.056 Sum_probs=125.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-EEEEec---cCCccEEEEEEcCC---CCEEEEEeC----C----C
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE---EHTQWITDVRFSPS---LSRLATSSA----D----R 327 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~-~~~~l~---~h~~~V~~l~~sp~---~~~l~t~s~----d----g 327 (545)
-.....++|.|||+++++ ..++.|++++ .+++ .+..+. ........|+|+|+ +..|+.+.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 345789999999985555 5669999997 4454 222221 22356899999997 555555443 3 5
Q ss_pred eEEEEECCCCC------ee-eeEecc-CcccEEEEEEeCCCCcEEEEEcC-------------CCcEEEEECCCCc----
Q 009059 328 TVRVWDTENPD------YS-LRTFTG-HSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNGS---- 382 (545)
Q Consensus 328 ~I~vwd~~~~~------~~-~~~~~~-h~~~V~~l~~~p~~~~ll~s~s~-------------dg~I~lwd~~~~~---- 382 (545)
.|..|+..... .. +..+.. .......|+|.|++. |+++.+. .|.|.-++....-
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 67777766431 11 111221 111346799999985 4444321 2456666654220
Q ss_pred ---eeeEEe-ccCCeeEEEEeCCCCEEEEEECCC----eEEEEECCC----------------CEEEEEecCCCCCEEEE
Q 009059 383 ---CAGVFK-CQSGATQMRFQPRLGRILAAAIEN----YISILDVET----------------QVCRLKLQGHKNQVHSV 438 (545)
Q Consensus 383 ---~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg----~I~i~d~~~----------------~~~~~~~~~h~~~I~~l 438 (545)
....+. .......++|+|+.+.|+++.... .|.+..... ..++..+.........+
T Consensus 185 pf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~ 264 (354)
T 3a9g_A 185 PFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA 264 (354)
T ss_dssp SSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred CCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence 011111 223467899999556666665432 244433211 01223331123467888
Q ss_pred EEc-------CCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe-eCCCceEEEEEcCCCCEEEEE
Q 009059 439 CWN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPTFPSLLVI 494 (545)
Q Consensus 439 ~~s-------p~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~-~~~~~v~~~~~sp~~~~l~~~ 494 (545)
+|. .+|.++++.. .+.|...++...........+. .....+..+++.|+|..+++.
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 884 4566666555 6688888886431111112222 224568899999999644443
No 299
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.02 E-value=0.011 Score=56.61 Aligned_cols=247 Identities=9% Similarity=0.146 Sum_probs=151.0
Q ss_pred CCcEEEEEcCCCeEEEE-eccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCc
Q 009059 284 DKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 362 (545)
Q Consensus 284 dg~I~lwd~~~~~~~~~-l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 362 (545)
+..|.|.|+.......+ --.-+. .-.+|..+.||.-. ..++.|+|+++... ++.+.- ...|.-=.|-.+. .
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~Ads----AIMnP~~~ViALra-g~~LQiFnletK~k-lks~~~-~e~VvfWkWis~~-~ 119 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISADS----AIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLN-T 119 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCCSE----EEECSSSSEEEEEE-TTEEEEEETTTTEE-EEEEEC-SSCEEEEEECSSS-E
T ss_pred CCEEEEEECCCCCCccccccccce----eeeCCCccEEEEec-CCeEEEechHHhhh-hcceec-CCccEEEEecCCC-e
Confidence 34788889887544322 111222 33588888777765 67899999998664 666554 3567777776553 3
Q ss_pred EEEEEcCCCcEEEEECCC-CceeeEEecc-----CCeeEEEEeCCCCEEEEEEC-------CCeEEEEECCCCEEEEEec
Q 009059 363 LLCSCDNNSEIRYWSINN-GSCAGVFKCQ-----SGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQ 429 (545)
Q Consensus 363 ll~s~s~dg~I~lwd~~~-~~~~~~~~~~-----~~v~~l~~sp~~~~l~~~~~-------dg~I~i~d~~~~~~~~~~~ 429 (545)
+.+.+ +..|+.|++.. ..+.+.+..+ ..|.....+++.++++..+- .|.+.+|..+.+.. ..++
T Consensus 120 L~lVT--~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ie 196 (365)
T 2xzh_A 120 VALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIE 196 (365)
T ss_dssp EEEEE--SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEEC
T ss_pred EEEEc--CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc-ceee
Confidence 33333 66899999974 4566666543 34777788888888776653 36788999887643 3466
Q ss_pred CCCCCEEEEEEcCC---CCEEEEEeC----CcEEEEEcCCCC-----CcceEEE-Eee---CCCceEEEEEcCCCCEEEE
Q 009059 430 GHKNQVHSVCWNTS---GEYLASVSD----ELVRVWSIGSGS-----KGECIHE-LSC---TGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 430 ~h~~~I~~l~~sp~---g~~l~s~sd----g~I~vwd~~~~~-----~~~~i~~-~~~---~~~~v~~~~~sp~~~~l~~ 493 (545)
+|...-..+.+.-+ ..+++.+.. +.++|.++.... ..+.... +-. ...-..++..++....++.
T Consensus 197 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyv 276 (365)
T 2xzh_A 197 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 276 (365)
T ss_dssp CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEE
Confidence 66443333322111 124444442 489999985531 1111111 111 1344567888999999999
Q ss_pred EEcCCeEEEEeCCCCeEEEe-ccCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 009059 494 IGCYETLELWNMTENKTLTL-SAHDKLVSSLAASTVNGMVASASHDKCV 541 (545)
Q Consensus 494 ~~~dg~I~iwd~~~~~~~~~-~~h~~~V~~l~~spd~~~las~s~Dg~I 541 (545)
.+..|.|++||++++.++.. .-....|..-+-+....=++.....|.|
T Consensus 277 iTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqV 325 (365)
T 2xzh_A 277 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 325 (365)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEE
T ss_pred EeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEE
Confidence 99999999999999998832 2333444444433333333334455543
No 300
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.02 E-value=0.002 Score=62.92 Aligned_cols=180 Identities=11% Similarity=0.185 Sum_probs=117.9
Q ss_pred cEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCC----CCE--EEEE-EC---CCeEEEEEC--CCCEEEEEec
Q 009059 362 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR----LGR--ILAA-AI---ENYISILDV--ETQVCRLKLQ 429 (545)
Q Consensus 362 ~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~----~~~--l~~~-~~---dg~I~i~d~--~~~~~~~~~~ 429 (545)
.+++.....+.+.+||+ +++.+..+.. ..++.+.+-|. +.. ++++ .. ++.|.+|++ .++. +..+.
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~ 117 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMT 117 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECS
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecc
Confidence 34556667788999999 7888887754 56677666653 221 3333 33 478999966 3443 44442
Q ss_pred C------CC-CCEEEEEE--cCC-CC-EEEEEe-CCcEEEEEcCCC----CCcceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 430 G------HK-NQVHSVCW--NTS-GE-YLASVS-DELVRVWSIGSG----SKGECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 430 ~------h~-~~I~~l~~--sp~-g~-~l~s~s-dg~I~vwd~~~~----~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
. .. ..+..+|+ ++. ++ ++++.. ++.+..|++... -..+.+.++.. ...+..|+..+....|++
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEE
Confidence 1 11 56677887 774 54 455555 889999998432 12345566654 567899999999999999
Q ss_pred EEcCCeEEEEeCC-----CCeEEEeccC---CCCeeEEEE--eCCCC-EEEEEe-CCCcEEEcC
Q 009059 494 IGCYETLELWNMT-----ENKTLTLSAH---DKLVSSLAA--STVNG-MVASAS-HDKCVKIWK 545 (545)
Q Consensus 494 ~~~dg~I~iwd~~-----~~~~~~~~~h---~~~V~~l~~--spd~~-~las~s-~Dg~I~iWd 545 (545)
+-.+..|..|+.+ +++.+...+. ...+..|++ .++++ ||++++ .+.++.|||
T Consensus 197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 9999888888865 3445533322 246888888 45555 666666 556777764
No 301
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.02 E-value=0.021 Score=62.74 Aligned_cols=260 Identities=12% Similarity=0.048 Sum_probs=153.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe-ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 341 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l-~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~ 341 (545)
...|.||.-..+| +|-.|+.+| +..||-...+..... ......|.++....++ .|..|+.+| +..||..+....
T Consensus 21 ~n~V~~I~qD~~G-~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~- 95 (758)
T 3ott_A 21 ASVVSCFLQDSEG-LIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYE- 95 (758)
T ss_dssp CCCEEEEEECTTS-CEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEEC-
T ss_pred cceEEEEEECCCC-CEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEE-
Confidence 4679999998888 455566666 666774332211111 1123568888777665 566777666 788998765431
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-----ccCCeeEEEEeCCCCEEEEEECCCeEEE
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----CQSGATQMRFQPRLGRILAAAIENYISI 416 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-----~~~~v~~l~~sp~~~~l~~~~~dg~I~i 416 (545)
.........|.++... ++ .+. .+..+ .|..||..+++...... ....+.++....++ .+.+++. +.|..
T Consensus 96 ~~~~~~~~~i~~i~~~-~g-~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~lWigt~-~Gl~~ 169 (758)
T 3ott_A 96 QPETDFPTDVRTMALQ-GD-TLW-LGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDN-QIYVGTY-NGLCR 169 (758)
T ss_dssp CCSCCCCSCEEEEEEE-TT-EEE-EEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTC-CEEEEET-TEEEE
T ss_pred CcccCCCceEEEEEec-CC-cEE-EEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCC-CEEEEeC-CCHhh
Confidence 1111122357776543 33 444 44444 68889987665432211 12347777777764 4555665 46888
Q ss_pred EECCCCEEEEEe-cCC----CCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEE
Q 009059 417 LDVETQVCRLKL-QGH----KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 491 (545)
Q Consensus 417 ~d~~~~~~~~~~-~~h----~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l 491 (545)
||..+++..... ... ...|.++....++..|..+.++-+..+|..+... .....+ ....|.++....++. |
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~-~~~~~l--~~~~i~~i~~d~~g~-l 245 (758)
T 3ott_A 170 YIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQI-KQTEAF--HNNSIKSLALDGNGD-L 245 (758)
T ss_dssp EETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEE-EEEEEE--EEEEEEEEEECTTCC-E
T ss_pred CccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECCCCeEEcCCCCeE-EeccCC--CCCeEEEEEEcCCCC-E
Confidence 998877543221 111 2348899888877755555555688888765421 111112 234588888888887 5
Q ss_pred EEEEcCCeEEEEeCCCCeEEEecc--------CCCCeeEEEEeCCCCEEEEEeCCC
Q 009059 492 LVIGCYETLELWNMTENKTLTLSA--------HDKLVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 492 ~~~~~dg~I~iwd~~~~~~~~~~~--------h~~~V~~l~~spd~~~las~s~Dg 539 (545)
.+|+ ++.|.+++..+++...+.. ....|.++....+|.+.+ |+..|
T Consensus 246 WigT-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G 299 (758)
T 3ott_A 246 LAGT-DNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG 299 (758)
T ss_dssp EEEE-TTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS
T ss_pred EEEe-CCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc
Confidence 5566 4578899987766543321 124588888887776554 33445
No 302
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.96 E-value=0.036 Score=63.47 Aligned_cols=167 Identities=10% Similarity=0.023 Sum_probs=105.1
Q ss_pred cEEEEECCCCceeeEEeccCC--eeEEEE---eCC-CCEEEEEE----------CCCeEEEEECCCCEEEEEe-cCCCCC
Q 009059 372 EIRYWSINNGSCAGVFKCQSG--ATQMRF---QPR-LGRILAAA----------IENYISILDVETQVCRLKL-QGHKNQ 434 (545)
Q Consensus 372 ~I~lwd~~~~~~~~~~~~~~~--v~~l~~---sp~-~~~l~~~~----------~dg~I~i~d~~~~~~~~~~-~~h~~~ 434 (545)
.|++.|..+.+.+..+..... +.+++. ..+ ..++++|+ ..|.|++|++..++..... ...++.
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 477788887777766665433 444443 222 36777777 2478999998755432221 124678
Q ss_pred EEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE--EeCCCCeEEE
Q 009059 435 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTENKTLT 512 (545)
Q Consensus 435 I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i--wd~~~~~~~~ 512 (545)
|++++-- +| +|+++-...|++|++...+... ...... ..+..+.....+.++++|..-..|.+ |+...++...
T Consensus 888 v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~--~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~ 962 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLASINSTVRLYEWTTEKELR--TECNHY-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEE 962 (1158)
T ss_dssp EEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE--EEEEEC-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEE
T ss_pred CEEEeee-CC-EEEEEcCCEEEEEECCCCceEE--EEeecc-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEE
Confidence 9998754 34 6666667899999997653222 111111 22333333345778999998886665 5556666654
Q ss_pred ec--cCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 513 LS--AHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 513 ~~--~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
+. .+...++++.+-.+ ..++.+..+|.|.+.
T Consensus 963 ~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl 995 (1158)
T 3ei3_A 963 IARDFNPNWMSAVEILDD-DNFLGAENAFNLFVC 995 (1158)
T ss_dssp EEECCSCBCEEEEEEEET-TEEEEEETTSEEEEE
T ss_pred EEeecccccEEEEEEEcc-CcEEEEcCCCcEEEE
Confidence 43 45667888888654 477889999998875
No 303
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.94 E-value=0.0046 Score=59.83 Aligned_cols=193 Identities=10% Similarity=0.133 Sum_probs=119.7
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEEEE-ecc----C--CccEEEEEE---cCCCCEEEEEe----------
Q 009059 266 VESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKST-LEE----H--TQWITDVRF---SPSLSRLATSS---------- 324 (545)
Q Consensus 266 V~~l~~spdg~~latg~-~dg~I~lwd~~~~~~~~~-l~~----h--~~~V~~l~~---sp~~~~l~t~s---------- 324 (545)
-.+++|.+....|..++ ..+.|..|+...+..... +.+ . ...+..|.| .|+++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 44689987544555555 789999999875543333 322 1 124689999 68877777544
Q ss_pred ---CCCeEEEEECC---CCCeeee-EeccC-----------cccEEEEEEeCCCCcEEEEEcCC-CcEEEEECCCCceee
Q 009059 325 ---ADRTVRVWDTE---NPDYSLR-TFTGH-----------STTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAG 385 (545)
Q Consensus 325 ---~dg~I~vwd~~---~~~~~~~-~~~~h-----------~~~V~~l~~~p~~~~ll~s~s~d-g~I~lwd~~~~~~~~ 385 (545)
.+..|..||+. +++.... .+... ...+..++..++|+.++ +++.. +.|..++..... +.
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYV-t~s~~~~~I~rV~pdG~~-~~ 172 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYV-AFALGMPAIARVSADGKT-VS 172 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEE-EEEESSCEEEEECTTSCC-EE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEE-eCCCCCCeEEEEeCCCCE-Ee
Confidence 26789999998 5554222 22111 13588999999986555 67767 778777776442 22
Q ss_pred EEe--c-----cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE--EEEec--CC---CCCEEEE-EEcCCCCEEEEE
Q 009059 386 VFK--C-----QSGATQMRFQPRLGRILAAAIENYISILDVETQVC--RLKLQ--GH---KNQVHSV-CWNTSGEYLASV 450 (545)
Q Consensus 386 ~~~--~-----~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~--~~~~~--~h---~~~I~~l-~~sp~g~~l~s~ 450 (545)
.+. . ....+.+++.|++..|++....|.|..+|+.+... +. +. +. -.....| ..-.+|+.|+++
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~vllV~ 251 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNESVLVG 251 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEEEEEE
T ss_pred eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEEEEEE
Confidence 221 1 12367999999999999988899999999885432 21 11 21 1223343 333467775555
Q ss_pred e--CCcEEEEEcC
Q 009059 451 S--DELVRVWSIG 461 (545)
Q Consensus 451 s--dg~I~vwd~~ 461 (545)
. .+.+.+.+..
T Consensus 252 ~~~~~~~~l~S~D 264 (334)
T 2p9w_A 252 ARAPYAISFRSWD 264 (334)
T ss_dssp EETTEEEEEECSS
T ss_pred cCCCCEEEEECCC
Confidence 4 5555555443
No 304
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.92 E-value=0.022 Score=56.74 Aligned_cols=247 Identities=9% Similarity=0.149 Sum_probs=151.7
Q ss_pred CCcEEEEEcCCCeEEEEe-ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCc
Q 009059 284 DKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 362 (545)
Q Consensus 284 dg~I~lwd~~~~~~~~~l-~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 362 (545)
+..|.|.|+.....+.+- -.-+ +.-.+|..+.||.-. ..++.|||+++... +..+.-. ..|.-=.|-.+. .
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnle~K~k-lks~~~~-e~VvfWkWis~~-~ 118 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTMT-DDVTFWKWISLN-T 118 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCCS----EEEECSSSSCEEEEE-TTEEEEEETTTTEE-EEEEECS-SCCCEEEEEETT-E
T ss_pred CCeEEEEECCCCCcceecccccc----eeeeCCCCcEEEEec-CCeEEEEchHHhhh-hcceecC-CCceEEEecCCC-e
Confidence 347888898875443221 1111 234678777777665 67999999998664 6666543 356666676442 3
Q ss_pred EEEEEcCCCcEEEEECCC-CceeeEEecc-----CCeeEEEEeCCCCEEEEEEC-------CCeEEEEECCCCEEEEEec
Q 009059 363 LLCSCDNNSEIRYWSINN-GSCAGVFKCQ-----SGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQ 429 (545)
Q Consensus 363 ll~s~s~dg~I~lwd~~~-~~~~~~~~~~-----~~v~~l~~sp~~~~l~~~~~-------dg~I~i~d~~~~~~~~~~~ 429 (545)
+. ... +..|+.|++.. ..+++.|..+ ..|.....+++.++++..+- .|.+.+|..+.+. -..++
T Consensus 119 l~-lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ie 195 (494)
T 1bpo_A 119 VA-LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE 195 (494)
T ss_dssp EE-EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEEC
T ss_pred EE-EEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchhe
Confidence 33 332 67899999974 4566666543 34777788899888876552 4678899888664 23466
Q ss_pred CCCCCEEEEEEcCC---CCEEEEEeC----CcEEEEEcCCCC-----CcceEEEEe----eCCCceEEEEEcCCCCEEEE
Q 009059 430 GHKNQVHSVCWNTS---GEYLASVSD----ELVRVWSIGSGS-----KGECIHELS----CTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 430 ~h~~~I~~l~~sp~---g~~l~s~sd----g~I~vwd~~~~~-----~~~~i~~~~----~~~~~v~~~~~sp~~~~l~~ 493 (545)
+|......+.+..+ ..+++.+.. +.++|.++.... ..+....+. ....-..++..++....++.
T Consensus 196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyv 275 (494)
T 1bpo_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (494)
T ss_dssp CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEE
Confidence 66554444433211 124444442 589999986531 111111111 11344567889999999999
Q ss_pred EEcCCeEEEEeCCCCeEEEe-ccCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 009059 494 IGCYETLELWNMTENKTLTL-SAHDKLVSSLAASTVNGMVASASHDKCV 541 (545)
Q Consensus 494 ~~~dg~I~iwd~~~~~~~~~-~~h~~~V~~l~~spd~~~las~s~Dg~I 541 (545)
.+..|.|++||++++.++.. .-....|..-+-.....=++.....|.|
T Consensus 276 iTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred EecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence 99999999999999998832 2334445444444443334444455544
No 305
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.89 E-value=0.006 Score=59.02 Aligned_cols=207 Identities=10% Similarity=0.046 Sum_probs=131.4
Q ss_pred cCCccEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeeeEecc----C--cccEEEEEE---eCCCCcEEEEEc----
Q 009059 303 EHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTG----H--STTVMSLDF---HPSKEDLLCSCD---- 368 (545)
Q Consensus 303 ~h~~~V~~l~~sp~~~~l~t~s-~dg~I~vwd~~~~~~~~~~~~~----h--~~~V~~l~~---~p~~~~ll~s~s---- 368 (545)
...-.-.+++|.+....|+.++ ..++|..||...+......+.+ . ...+..|.| .|+ ..|+++..
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~a 88 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKS 88 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccc
Confidence 3344456789988666666666 7899999999755432223322 1 114689999 577 45555433
Q ss_pred ---------CCCcEEEEECC---CCceeeEEecc--------------CCeeEEEEeCCCCEEEEEECC-CeEEEEECCC
Q 009059 369 ---------NNSEIRYWSIN---NGSCAGVFKCQ--------------SGATQMRFQPRLGRILAAAIE-NYISILDVET 421 (545)
Q Consensus 369 ---------~dg~I~lwd~~---~~~~~~~~~~~--------------~~v~~l~~sp~~~~l~~~~~d-g~I~i~d~~~ 421 (545)
.+..|..||+. +++.+...... .....++..++|+.+++.+.. +.|..++...
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 25779999999 78877666532 247899999999999999888 9999888875
Q ss_pred CEEEEE-ecC----CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe-e---CCCceEEE-EEcCCCCE
Q 009059 422 QVCRLK-LQG----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-C---TGNKFHSC-VFHPTFPS 490 (545)
Q Consensus 422 ~~~~~~-~~~----h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~-~---~~~~v~~~-~~sp~~~~ 490 (545)
.....- +.. .....+.|++.|+|+.|++.. .+.|..+|+...... .+..-. + .......+ ..-.+++.
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEE
Confidence 532211 111 122367999999999988887 889999998843110 122110 1 11223333 34456776
Q ss_pred EEEEE-cCCeEEEEeCCCCeEE
Q 009059 491 LLVIG-CYETLELWNMTENKTL 511 (545)
Q Consensus 491 l~~~~-~dg~I~iwd~~~~~~~ 511 (545)
++++. ..+.+.+.+.+..+..
T Consensus 248 llV~~~~~~~~~l~S~DgW~sa 269 (334)
T 2p9w_A 248 VLVGARAPYAISFRSWDNWKSA 269 (334)
T ss_dssp EEEEEETTEEEEEECSSTTSEE
T ss_pred EEEEcCCCCEEEEECCCCccee
Confidence 45544 4556666666655444
No 306
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.87 E-value=0.0049 Score=61.01 Aligned_cols=224 Identities=12% Similarity=0.063 Sum_probs=122.0
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eeeEe---ccCcccEEEEEEeCC---CCcEEEEEcCC-----CcE
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTF---TGHSTTVMSLDFHPS---KEDLLCSCDNN-----SEI 373 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~-~~~~~---~~h~~~V~~l~~~p~---~~~ll~s~s~d-----g~I 373 (545)
.....|+|.|+|+++++ ..+|.|.+++ ++.. .+..+ .........|+|+|+ +..++++.... ..|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 34678999999985554 5679999998 3332 11111 122356899999998 55666554432 568
Q ss_pred EEEECCCCce-----e-eEEec----cCCeeEEEEeCCCCEEEEEEC-------------CCeEEEEECCCC--------
Q 009059 374 RYWSINNGSC-----A-GVFKC----QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ-------- 422 (545)
Q Consensus 374 ~lwd~~~~~~-----~-~~~~~----~~~v~~l~~sp~~~~l~~~~~-------------dg~I~i~d~~~~-------- 422 (545)
..|+...+.. + ..+.. ......++|.|++..+++.+. .|.|..++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 8888764421 1 11221 112468999999754444332 156666666531
Q ss_pred ------EEEEEecCCCCCEEEEEEcC-CCCEEEEEe-CCcE------EEEEcCCCCC---------------cceEEEEe
Q 009059 423 ------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELV------RVWSIGSGSK---------------GECIHELS 473 (545)
Q Consensus 423 ------~~~~~~~~h~~~I~~l~~sp-~g~~l~s~s-dg~I------~vwd~~~~~~---------------~~~i~~~~ 473 (545)
..+.. .++ .....++|+| ++.++++-. .+.+ .|.-+..+.. ...+..+
T Consensus 188 ~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~- 264 (352)
T 2ism_A 188 GRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW- 264 (352)
T ss_dssp TCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-
T ss_pred CCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-
Confidence 01111 122 2356789999 666665544 2231 2333333220 0112222
Q ss_pred eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe-------EEEeccCCCCeeEEEEeCCCCEEEEEe
Q 009059 474 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-------TLTLSAHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 474 ~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-------~~~~~~h~~~V~~l~~spd~~~las~s 536 (545)
........++| .++..+++.-..+.|...+++... ...+..-...+..+++.|||.++++..
T Consensus 265 ~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 12234556777 455544444444577777765432 112222346789999999998776654
No 307
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.87 E-value=0.025 Score=64.81 Aligned_cols=272 Identities=12% Similarity=0.084 Sum_probs=146.3
Q ss_pred CCCeEEEEEcCC------CCEEEEEeC-CCcEEEEEcCCCeEEEEecc-CCccEEEEEEc--CCCCEEEEEeCCCeEEEE
Q 009059 263 TSKVESCHFSPD------GKLLATGGH-DKKAVLWCTESFTVKSTLEE-HTQWITDVRFS--PSLSRLATSSADRTVRVW 332 (545)
Q Consensus 263 ~~~V~~l~~spd------g~~latg~~-dg~I~lwd~~~~~~~~~l~~-h~~~V~~l~~s--p~~~~l~t~s~dg~I~vw 332 (545)
.+.|.|+++.+. ++++|+|.. |++|+|+++.+.+.+....- ......++.+. ....+|..|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999863 469999997 99999999998776643221 11233334332 234588899999988666
Q ss_pred ECC--CCCeee--eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCee-EEEEeCC--CCEE
Q 009059 333 DTE--NPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPR--LGRI 405 (545)
Q Consensus 333 d~~--~~~~~~--~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~-~l~~sp~--~~~l 405 (545)
.++ ++...- ..+.| ..++.-..+...+..-++.++ +....+|.-. ++....--....+. ...|+.. .+-+
T Consensus 633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~ 709 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSL 709 (1158)
T ss_dssp EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEE
T ss_pred EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcE
Confidence 554 333211 12333 345554445444444444444 3444444433 33221111112232 3334432 1234
Q ss_pred EEEECCCeEEEEECCCC--EEEEEecCCCCCEEEEEEcCCCCEEEEEe-C------------------------------
Q 009059 406 LAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D------------------------------ 452 (545)
Q Consensus 406 ~~~~~dg~I~i~d~~~~--~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-d------------------------------ 452 (545)
+ +..++.++|..+... -.+.++. -...+..++++|..+.++.+. +
T Consensus 710 v-~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1158)
T 3ei3_A 710 A-LANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSK 787 (1158)
T ss_dssp E-EECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCC
T ss_pred E-EEcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccc
Confidence 4 344556888876532 2333333 345778888888776554433 1
Q ss_pred -------------------CcEEEEEcCCCCCcceEEEEeeCC-CceEEEE---EcCC-CCEEEEEE----------cCC
Q 009059 453 -------------------ELVRVWSIGSGSKGECIHELSCTG-NKFHSCV---FHPT-FPSLLVIG----------CYE 498 (545)
Q Consensus 453 -------------------g~I~vwd~~~~~~~~~i~~~~~~~-~~v~~~~---~sp~-~~~l~~~~----------~dg 498 (545)
..|++.|..+. ..+..+.-.. ..+.+++ |..+ ..+|++|+ ..|
T Consensus 788 ~~~~~~~~~~~~~g~~~~~s~i~lidp~t~---~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~G 864 (1158)
T 3ei3_A 788 LFSSSTAPHETSFGEEVEVHNLLIIDQHTF---EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQG 864 (1158)
T ss_dssp CC----------CCCEEEEEEEEEEETTTC---CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCE
T ss_pred cccccccCchhhcCCceeeEEEEEEeCCCC---eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCce
Confidence 12445554433 3333333222 2234443 3332 46788776 246
Q ss_pred eEEEEeCCCCeEE--EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 499 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 499 ~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.|++|++.+++.. ......+.|++|+-- .|++||.. ...|+||+
T Consensus 865 ri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~ 910 (1158)
T 3ei3_A 865 RIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYE 910 (1158)
T ss_dssp EEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEE
T ss_pred EEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEE
Confidence 8999999765544 233457889998743 35444433 36788874
No 308
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.86 E-value=5.5e-05 Score=82.42 Aligned_cols=214 Identities=8% Similarity=0.016 Sum_probs=128.0
Q ss_pred CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC----CceeeEEe-ccCCeeEEEEe
Q 009059 325 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFK-CQSGATQMRFQ 399 (545)
Q Consensus 325 ~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~----~~~~~~~~-~~~~v~~l~~s 399 (545)
..+.|++.++..... ...+ .....+..++|++.+..|+++-...+.|+.+++.. ......+. .......+++.
T Consensus 384 ~~~~I~~id~~~~~~-~~~~-~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEY-TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp CTTC-CEECTTSCCE-ECCS-CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred CccceEEEeCCCCcc-eeee-ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 345788888876543 2222 22345778999988777776666678899999875 22222221 11235678888
Q ss_pred CCCCEEEEEE-CCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCCCcceEEEEeeC
Q 009059 400 PRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECIHELSCT 475 (545)
Q Consensus 400 p~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--d-g~I~vwd~~~~~~~~~i~~~~~~ 475 (545)
+.++.|+++. ..+.|.++++........+.........|+++|.+.+|+.+. . +.|.++++..... ..+ +...
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l--~~~~ 538 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSL--VTEN 538 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEE--SCSS
T ss_pred eeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEE--EeCC
Confidence 6656666554 468899999886654444433334567889998765555444 3 5788887754321 111 1122
Q ss_pred CCceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEEEecc---CCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 476 GNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 476 ~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~~---h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
-.....++|+|++..|+.+... +.|.++++.......+.. .......|++..+ .++++....+.|..+
T Consensus 539 l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 539 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSA 610 (699)
T ss_dssp CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence 3456789999987777777654 589999997654443332 2233456666543 344444445666654
No 309
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.84 E-value=0.011 Score=58.59 Aligned_cols=225 Identities=12% Similarity=0.061 Sum_probs=126.8
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEe---ccCcccEEEEEEeCC---CCcEEEEEcC---C----Cc
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPS---KEDLLCSCDN---N----SE 372 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~---~~h~~~V~~l~~~p~---~~~ll~s~s~---d----g~ 372 (545)
.....|+|.|++++ +++..+|.|++++.. +...+..+ .........|+|+|+ +..++++-.. + ..
T Consensus 29 ~~P~~ia~~pdG~l-~V~e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRY-LVTERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEE-EEEETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeE-EEEeCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 45788999999974 445567999999743 33222221 122356889999997 5556544432 3 56
Q ss_pred EEEEECCCC--ce-----e-eEEec--cCCeeEEEEeCCCCEEEEEEC-------------CCeEEEEECCCC-------
Q 009059 373 IRYWSINNG--SC-----A-GVFKC--QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ------- 422 (545)
Q Consensus 373 I~lwd~~~~--~~-----~-~~~~~--~~~v~~l~~sp~~~~l~~~~~-------------dg~I~i~d~~~~------- 422 (545)
|..|+.... .. + ..+.. ......+.|.|++..+++.+. .|.|..++....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 777777644 11 1 11221 113467999999765555332 246666665432
Q ss_pred --EEEEEecCCCCCEEEEEEcC-CCCEEEEEe--CC--cEEEEEcCCCCC---------------cceEEEEeeCCCceE
Q 009059 423 --VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DE--LVRVWSIGSGSK---------------GECIHELSCTGNKFH 480 (545)
Q Consensus 423 --~~~~~~~~h~~~I~~l~~sp-~g~~l~s~s--dg--~I~vwd~~~~~~---------------~~~i~~~~~~~~~v~ 480 (545)
..+. ..++. ....++|+| +|.++++-. +. .|.+.. .+.. ...+..+........
T Consensus 187 ~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~ 262 (354)
T 3a9g_A 187 PNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS 262 (354)
T ss_dssp TTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred CCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence 1122 12333 346899999 677666544 22 344332 2210 012222211234567
Q ss_pred EEEEc-------CCCCEEEEEEcCCeEEEEeCCCC-eEE---Eec-cCCCCeeEEEEeCCCCEEEEEe
Q 009059 481 SCVFH-------PTFPSLLVIGCYETLELWNMTEN-KTL---TLS-AHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 481 ~~~~s-------p~~~~l~~~~~dg~I~iwd~~~~-~~~---~~~-~h~~~V~~l~~spd~~~las~s 536 (545)
.++|. .++.++++.-..+.|...++... +.. .+. .....+..+++.|||.++++..
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 78883 45655554445568888888753 232 222 2246789999999998777664
No 310
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.82 E-value=0.0042 Score=61.29 Aligned_cols=177 Identities=7% Similarity=0.042 Sum_probs=102.5
Q ss_pred CCCeEEEEECCCCCeeee--Eecc-----CcccEEEEEEeC--CCC-cEEEEEcC--CCcEEEEECCCC--cee--eEEe
Q 009059 325 ADRTVRVWDTENPDYSLR--TFTG-----HSTTVMSLDFHP--SKE-DLLCSCDN--NSEIRYWSINNG--SCA--GVFK 388 (545)
Q Consensus 325 ~dg~I~vwd~~~~~~~~~--~~~~-----h~~~V~~l~~~p--~~~-~ll~s~s~--dg~I~lwd~~~~--~~~--~~~~ 388 (545)
.+|.|.++|..+...... .+.+ .......|.+.+ ++. +++++-.. +..|.+|++... ... ..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 689999999874322122 2222 234677888766 344 34444332 456777776543 222 2222
Q ss_pred c--cCCeeEEEEeCCCCEEEEEE-----------------CCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEE
Q 009059 389 C--QSGATQMRFQPRLGRILAAA-----------------IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 449 (545)
Q Consensus 389 ~--~~~v~~l~~sp~~~~l~~~~-----------------~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s 449 (545)
. -...+.+.+.++|..+++.. ..|.|+.+|...-+. +...-...+.++|+||++.|+.
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~---~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRV---VAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEE---EEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEE---eecCCcccCcceECCCCCEEEE
Confidence 2 12478999999966555433 125677777642222 2222346789999999998888
Q ss_pred Ee--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcC-CCCEEEEEEcCC-eEEEEeC
Q 009059 450 VS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGCYE-TLELWNM 505 (545)
Q Consensus 450 ~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg-~I~iwd~ 505 (545)
+. .+.|..|++...........+ ......-.+++.+ +|++.+++..++ .|..|+-
T Consensus 238 adt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred EeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 77 679999998743222222333 2356678899999 588666555343 3333443
No 311
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.77 E-value=0.0083 Score=59.37 Aligned_cols=231 Identities=9% Similarity=0.078 Sum_probs=126.3
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee--ee----EeccCcccEEEEEEeCC---CCcEEEEEcC-------
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LR----TFTGHSTTVMSLDFHPS---KEDLLCSCDN------- 369 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~--~~----~~~~h~~~V~~l~~~p~---~~~ll~s~s~------- 369 (545)
.....|+|.|+++.|+++...|.|++++.. +... +. .+.........|+|+|+ +..++++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 346889999999844455678999999854 2211 11 11122345789999996 4555545332
Q ss_pred CCcEEEEECCCC--ce--eeE-Eec-c------CCeeEEEEeCCCCEEEEEECC--------------CeEEEEECCCC-
Q 009059 370 NSEIRYWSINNG--SC--AGV-FKC-Q------SGATQMRFQPRLGRILAAAIE--------------NYISILDVETQ- 422 (545)
Q Consensus 370 dg~I~lwd~~~~--~~--~~~-~~~-~------~~v~~l~~sp~~~~l~~~~~d--------------g~I~i~d~~~~- 422 (545)
...|..|++... .. ... +.. . .....+.|.|++ .|+++..+ |.|.-++....
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 235666666533 11 111 111 1 124579999997 55555433 46777776532
Q ss_pred -------------EEEEEecCCCCCEEEEEEcC-CCCEEEEEe--CCcEEEEEcCCCCC---------------------
Q 009059 423 -------------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DELVRVWSIGSGSK--------------------- 465 (545)
Q Consensus 423 -------------~~~~~~~~h~~~I~~l~~sp-~g~~l~s~s--dg~I~vwd~~~~~~--------------------- 465 (545)
..+.. .++ .....++|+| +|.++++-. ++.=.|.-+..+..
T Consensus 176 p~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp CTTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 11111 223 3467899999 566555433 22222222222111
Q ss_pred -------cceEEEEeeCCCceEEEEEcC-------CCCEEEEEEcCCeEEEEeCCCCeEE---Eec-cCCCCeeEEEEeC
Q 009059 466 -------GECIHELSCTGNKFHSCVFHP-------TFPSLLVIGCYETLELWNMTENKTL---TLS-AHDKLVSSLAAST 527 (545)
Q Consensus 466 -------~~~i~~~~~~~~~v~~~~~sp-------~~~~l~~~~~dg~I~iwd~~~~~~~---~~~-~h~~~V~~l~~sp 527 (545)
...+..+. +......+.|.. ++.++++.-..+.|...+++.++.. .+. .....+..|++.|
T Consensus 254 ~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p 332 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP 332 (353)
T ss_dssp BSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred CCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence 01112222 223566777764 3555555445668888888766544 222 2345799999999
Q ss_pred CCCEEEEEe-CCCcE
Q 009059 528 VNGMVASAS-HDKCV 541 (545)
Q Consensus 528 d~~~las~s-~Dg~I 541 (545)
||.++++.. .+|.|
T Consensus 333 dG~lyv~td~~~g~I 347 (353)
T 2g8s_A 333 DGYLYVLTDESSGEL 347 (353)
T ss_dssp TSCEEEEECSTTEEE
T ss_pred CCcEEEEEeCCCCEE
Confidence 999666543 45544
No 312
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.74 E-value=0.039 Score=54.10 Aligned_cols=230 Identities=11% Similarity=0.064 Sum_probs=128.5
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee-eeEe----ccCcccEEEEEEeCC---CCcEEEEE--cCCCcE
Q 009059 304 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTF----TGHSTTVMSLDFHPS---KEDLLCSC--DNNSEI 373 (545)
Q Consensus 304 h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~-~~~~----~~h~~~V~~l~~~p~---~~~ll~s~--s~dg~I 373 (545)
.-...+.|+|.|+|.++++--..|.|++++...+... +..+ .........|+++|+ +..++++- ..+..|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 3455789999999997777655899999987654431 2111 223466899999995 34444332 234556
Q ss_pred EEEECCCC----------ceee-EEec--cCCeeEEEEeCCCCEEEEEEC-------------CCeEEEEECCCC-----
Q 009059 374 RYWSINNG----------SCAG-VFKC--QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ----- 422 (545)
Q Consensus 374 ~lwd~~~~----------~~~~-~~~~--~~~v~~l~~sp~~~~l~~~~~-------------dg~I~i~d~~~~----- 422 (545)
.-|.+..+ +.+. .+.. ......+.|.|++..+++.+. .|.|.-++....
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 66665542 1111 1111 123467999999866665442 355666665432
Q ss_pred ----EEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCC---------------cceEEEEeeCCCceEE
Q 009059 423 ----VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK---------------GECIHELSCTGNKFHS 481 (545)
Q Consensus 423 ----~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~---------------~~~i~~~~~~~~~v~~ 481 (545)
..+.. .+|. ....++|+|+|.++++-. ++.-.|.-+..+.. ...+..+..+......
T Consensus 190 Pf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G 267 (347)
T 3das_A 190 PFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSG 267 (347)
T ss_dssp SSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEE
T ss_pred CCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcc
Confidence 11221 2443 346899999988776644 43233333333221 0112223222234566
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCCeE----E-EeccCCCCeeEEEEeCCCCEEEEEe
Q 009059 482 CVFHPTFPSLLVIGCYETLELWNMTENKT----L-TLSAHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 482 ~~~sp~~~~l~~~~~dg~I~iwd~~~~~~----~-~~~~h~~~V~~l~~spd~~~las~s 536 (545)
++|.. +..++..-..+.|....++.... . .+.+....+..|+..|||.++++.+
T Consensus 268 ~~~~~-g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 268 IAYAE-GSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEET-TEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred eEEEc-CceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 77763 44333333444676666655432 1 2334457899999999998766654
No 313
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.73 E-value=0.089 Score=57.66 Aligned_cols=268 Identities=8% Similarity=0.060 Sum_probs=155.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe-cc----CCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EE----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 337 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l-~~----h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~ 337 (545)
...|.++....+|.+.+ |+.. -|..++..+.+..... .. ....|.++....++..|..|+. +-+..+|..+.
T Consensus 145 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~ 221 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG 221 (758)
T ss_dssp CSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence 35688898888887655 4444 5778887776543221 11 1234888888777776666664 45888888765
Q ss_pred CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--------ccCCeeEEEEeCCCCEEEEEE
Q 009059 338 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--------CQSGATQMRFQPRLGRILAAA 409 (545)
Q Consensus 338 ~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--------~~~~v~~l~~sp~~~~l~~~~ 409 (545)
.. ..........|.++....++. +. .|.. +-|.+++..++....... ....|.++....+ +.|.+|+
T Consensus 222 ~~-~~~~~l~~~~i~~i~~d~~g~-lW-igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~-g~lWiGT 296 (758)
T 3ott_A 222 QI-KQTEAFHNNSIKSLALDGNGD-LL-AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQE-HNIWLGT 296 (758)
T ss_dssp EE-EEEEEEEEEEEEEEEECTTCC-EE-EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTT-CCEEEEE
T ss_pred eE-EeccCCCCCeEEEEEEcCCCC-EE-EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCC-CCEEEEe
Confidence 43 111111234588888777764 33 3443 458889887655432211 1123777877776 4566677
Q ss_pred CCCeEEEEECCCCEEEEEec-----CCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEe-------eCCC
Q 009059 410 IENYISILDVETQVCRLKLQ-----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-------CTGN 477 (545)
Q Consensus 410 ~dg~I~i~d~~~~~~~~~~~-----~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~-------~~~~ 477 (545)
..| +.++.....-...... .....|.++.-..+|.+.+...+ -+..++..++.... +..+. ....
T Consensus 297 ~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 373 (758)
T 3ott_A 297 DYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGERHD-AIWYRMGDKTYPLSHN 373 (758)
T ss_dssp SSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETT-EEEEESCTTSSCCC-CEEECTTCSSSCCSCS
T ss_pred CCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCC-cceeecccccccce-eEEeccCCcCCCCCCC
Confidence 666 5555432211111111 12346899998888887776544 46666654421111 11111 1234
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEec--c-----CCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 478 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS--A-----HDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 478 ~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~--~-----h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
.|.++.-..++. |.+|+ ++.|..||..+++...+. . ....|.++....++.+.+ |+..+-|.++
T Consensus 374 ~v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~ 444 (758)
T 3ott_A 374 RIRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVV 444 (758)
T ss_dssp CEEEEEECTTSC-EEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEE
T ss_pred ceEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEE
Confidence 588888888887 56666 568999999888765332 1 224578888777765444 5554334443
No 314
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.70 E-value=0.0094 Score=59.00 Aligned_cols=222 Identities=14% Similarity=0.119 Sum_probs=121.5
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEe-------ccCCccEEEEEEcCC---CCEEEEEeC--------
Q 009059 265 KVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPS---LSRLATSSA-------- 325 (545)
Q Consensus 265 ~V~~l~~spdg~-~latg~~dg~I~lwd~~~~~~~~~l-------~~h~~~V~~l~~sp~---~~~l~t~s~-------- 325 (545)
....|+|.|+|+ +++ +...|.|++++.. +.....+ .........|+|+|+ +.+|+.+..
T Consensus 19 ~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 468899999998 554 5567999999853 3322111 122345789999996 455554432
Q ss_pred CCeEEEEECCCCC--e-eee-Eecc------CcccEEEEEEeCCCCcEEEEEcC-------------CCcEEEEECCCCc
Q 009059 326 DRTVRVWDTENPD--Y-SLR-TFTG------HSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNGS 382 (545)
Q Consensus 326 dg~I~vwd~~~~~--~-~~~-~~~~------h~~~V~~l~~~p~~~~ll~s~s~-------------dg~I~lwd~~~~~ 382 (545)
...|..|++.... . ..+ .+.. .......|.|.|++. |+++.+. .|.|.-++....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 2356666664321 0 011 1111 111245799999984 4444332 2467777765320
Q ss_pred ------------eeeEEe-ccCCeeEEEEeCCCCEEEEEECCC----eEEEEECC--------C----------------
Q 009059 383 ------------CAGVFK-CQSGATQMRFQPRLGRILAAAIEN----YISILDVE--------T---------------- 421 (545)
Q Consensus 383 ------------~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg----~I~i~d~~--------~---------------- 421 (545)
....+. .......++|+|..+.|+++.... .|.+.... .
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 122222 223478899999656777765432 23221100 0
Q ss_pred -----CEEEEEecCCCCCEEEEEEcC-------CCCEEEEEe-CCcEEEEEcCCCCCcceEEE--E-eeCCCceEEEEEc
Q 009059 422 -----QVCRLKLQGHKNQVHSVCWNT-------SGEYLASVS-DELVRVWSIGSGSKGECIHE--L-SCTGNKFHSCVFH 485 (545)
Q Consensus 422 -----~~~~~~~~~h~~~I~~l~~sp-------~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~--~-~~~~~~v~~~~~s 485 (545)
..++..+. +...+..+.|.. +|.++++.. .+.|...++..+ ..+.. + ......+..+++.
T Consensus 256 ~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 256 IVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGD---KVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp SCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETT---EEEEEEEESGGGCCCEEEEEEC
T ss_pred CCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCC---eEeeeEEcccCCCCceeEEEEC
Confidence 01112222 234567788864 466666555 668888888754 22222 2 1224578999999
Q ss_pred CCCCEEEE
Q 009059 486 PTFPSLLV 493 (545)
Q Consensus 486 p~~~~l~~ 493 (545)
|+|..+++
T Consensus 332 pdG~lyv~ 339 (353)
T 2g8s_A 332 PDGYLYVL 339 (353)
T ss_dssp TTSCEEEE
T ss_pred CCCcEEEE
Confidence 99984443
No 315
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.65 E-value=0.0051 Score=59.09 Aligned_cols=228 Identities=9% Similarity=0.060 Sum_probs=116.5
Q ss_pred CCCEEEEEe-CC-----CcEEEEEcCCCeEEEE--eccCCccEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCC--
Q 009059 274 DGKLLATGG-HD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD-- 338 (545)
Q Consensus 274 dg~~latg~-~d-----g~I~lwd~~~~~~~~~--l~~h~~~V~~l~~sp~~~~l~t~s~d-----g~I~vwd~~~~~-- 338 (545)
++.+++.|+ .+ ..+.+||..+.+-... +.........+.+ ++.+++.|+.+ ..+.+||..+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 445666666 32 4688899877653321 2111111222222 56677777754 368899988765
Q ss_pred -eeee-EeccCcccEEEEEEeCCCCcEEEEEcCC-----CcEEEEECCCCceeeEEeccCC--eeEEEEeCCCCEEEEEE
Q 009059 339 -YSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAA 409 (545)
Q Consensus 339 -~~~~-~~~~h~~~V~~l~~~p~~~~ll~s~s~d-----g~I~lwd~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~~~~ 409 (545)
.... .+.........+.+ + +.+++.|+.+ ..+.+||+.+.+....-..... -..+.. .++..++.|+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--G-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECC
T ss_pred eeEECCCCCCCccceeEEEE--C-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECC
Confidence 3211 11111111222222 3 4566666543 3688999987765443332222 112222 2445556665
Q ss_pred CC-----CeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe-C-----CcEEEEEcCCCCCcceEEEEeeCC
Q 009059 410 IE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTG 476 (545)
Q Consensus 410 ~d-----g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s-d-----g~I~vwd~~~~~~~~~i~~~~~~~ 476 (545)
.+ ..+.+||+.+.+-... +.........+.+ ++++++.|+ + ..+.+||+.+.. ...+..+....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r 244 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS-WTTVTSMTTPR 244 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE-EEEECCCSSCC
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc-EEECCCCCCcc
Confidence 43 4699999988754332 2111112222332 566666665 3 368999987652 11221111111
Q ss_pred CceEEEEEcCCCCEEEEEEcC-----CeEEEEeCCCCeEEE
Q 009059 477 NKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLT 512 (545)
Q Consensus 477 ~~v~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~ 512 (545)
.....+.+ +++.++.|+.+ ..+.+||+.+++...
T Consensus 245 ~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 283 (301)
T 2vpj_A 245 CYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWEV 283 (301)
T ss_dssp BSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred cceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence 11222222 56666666655 368899998876553
No 316
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.57 E-value=0.072 Score=52.20 Aligned_cols=236 Identities=9% Similarity=0.071 Sum_probs=124.1
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE--EEe----ccCCccEEEEEEcCC---CCEEEEE---e
Q 009059 257 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL----EEHTQWITDVRFSPS---LSRLATS---S 324 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~--~~l----~~h~~~V~~l~~sp~---~~~l~t~---s 324 (545)
..+-..-...+.++|.|||+++++--..|.|++++..+++.. ..+ .........|+|+|+ +.+|+.. .
T Consensus 25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 334444456789999999998877655899999986655432 222 223566899999995 3445443 2
Q ss_pred CCCeEEEEECCCC----------CeeeeEec-cCcccEEEEEEeCCCCcEEEEEc------------CCCcEEEEECCCC
Q 009059 325 ADRTVRVWDTENP----------DYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCD------------NNSEIRYWSINNG 381 (545)
Q Consensus 325 ~dg~I~vwd~~~~----------~~~~~~~~-~h~~~V~~l~~~p~~~~ll~s~s------------~dg~I~lwd~~~~ 381 (545)
.++.|.-|.+... +..+..+. ........|.|.|++..++.+|+ ..|.|.-.+....
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 3456666665541 11111221 11123457999999854443332 1355555555422
Q ss_pred c-------eeeEEe-ccCCeeEEEEeCCCCEEEEEEC--CCeEEEEECCCCE------------------EEEEecCCCC
Q 009059 382 S-------CAGVFK-CQSGATQMRFQPRLGRILAAAI--ENYISILDVETQV------------------CRLKLQGHKN 433 (545)
Q Consensus 382 ~-------~~~~~~-~~~~v~~l~~sp~~~~l~~~~~--dg~I~i~d~~~~~------------------~~~~~~~h~~ 433 (545)
- ....+. .......++|+|+ +.|+++.. ++.-.|.-+..+. ++..+..+..
T Consensus 185 ip~~nPf~~~~i~a~G~RNp~Gla~dp~-G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGHRNVQGLAWDDK-QRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp BCTTCSSTTCCEEEBCCSBCCEEEECTT-CCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred ccCCCCCCCCeEEeeCCCCcceEEECCC-CCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 0 011222 2234678999997 45555543 2212222111111 1222222223
Q ss_pred CEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC-cceEEEEeeCCCceEEEEEcCCCCEEEEE
Q 009059 434 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVI 494 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~-~~~i~~~~~~~~~v~~~~~sp~~~~l~~~ 494 (545)
....++|. +|.+++..- .+.|....+..... ......+......+..++..|+|..+++.
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 55677776 455555544 45666666654321 11122233334678888888888644443
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.53 E-value=0.019 Score=55.20 Aligned_cols=225 Identities=8% Similarity=0.018 Sum_probs=115.1
Q ss_pred CEEEEEeC--CCcEEEEEcCCCeEEE--EeccCCccEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCCeeee-Eecc
Q 009059 276 KLLATGGH--DKKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLR-TFTG 346 (545)
Q Consensus 276 ~~latg~~--dg~I~lwd~~~~~~~~--~l~~h~~~V~~l~~sp~~~~l~t~s~d----g~I~vwd~~~~~~~~~-~~~~ 346 (545)
.+++.|+. ...+.+||..+.+-.. .+......-..+.+ ++.+++.|+.+ ..+.+||..+...... .+..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 35556654 3578899988755332 12111112222222 56677777754 5788899887654221 1111
Q ss_pred CcccEEEEEEeCCCCcEEEEEcCC------CcEEEEECCCCceeeEEeccCC--eeEEEEeCCCCEEEEEEC--------
Q 009059 347 HSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI-------- 410 (545)
Q Consensus 347 h~~~V~~l~~~p~~~~ll~s~s~d------g~I~lwd~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~~~~~-------- 410 (545)
.......+.+ + ..+++.|+.+ ..+.+||+.+.+....-..... -..+.. .++..++.|+.
T Consensus 91 ~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 91 PRDSLAACAA--E-GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp CCBSCEEEEE--T-TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCE
T ss_pred cccceeEEEE--C-CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccc
Confidence 1111122222 2 4566666654 4688999988764433222111 112222 24445555543
Q ss_pred -CCeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe-C-----CcEEEEEcCCCCCcceEEEEeeCCCceEE
Q 009059 411 -ENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHS 481 (545)
Q Consensus 411 -dg~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s-d-----g~I~vwd~~~~~~~~~i~~~~~~~~~v~~ 481 (545)
-..+.+||+.+.+-... +.........+.+ ++++++.|+ + ..+.+||+.+.. ...+..+.........
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~ 243 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKC 243 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEE
T ss_pred ccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeE
Confidence 34589999988754332 1111112222222 566666665 3 368899987642 1111111111112222
Q ss_pred EEEcCCCCEEEEEEcC-----CeEEEEeCCCCeEE
Q 009059 482 CVFHPTFPSLLVIGCY-----ETLELWNMTENKTL 511 (545)
Q Consensus 482 ~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~ 511 (545)
+.+ ++..++.|+.+ ..+.+||+.+.+..
T Consensus 244 ~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 244 AAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp EEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred EEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 333 56667777744 47899999887665
No 318
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.51 E-value=0.021 Score=58.60 Aligned_cols=258 Identities=11% Similarity=0.086 Sum_probs=148.9
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEeccC-------------------------CccEE--EEEEcC---CCCEEEEEeC-C
Q 009059 278 LATGGHDKKAVLWCTESFTVKSTLEEH-------------------------TQWIT--DVRFSP---SLSRLATSSA-D 326 (545)
Q Consensus 278 latg~~dg~I~lwd~~~~~~~~~l~~h-------------------------~~~V~--~l~~sp---~~~~l~t~s~-d 326 (545)
+.+|+..|.|+|+-+.+++.+..+.-. .+... .+.+.. ||+||+.-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 678889999999999999888776310 01111 123321 5777877664 5
Q ss_pred CeEEEEECCCCCeeeeEeccCcccEEEEEEe--CCCCcEEEEEc------CCCcE------------EEEECCCCceeeE
Q 009059 327 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCD------NNSEI------------RYWSINNGSCAGV 386 (545)
Q Consensus 327 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~--p~~~~ll~s~s------~dg~I------------~lwd~~~~~~~~~ 386 (545)
..|...+++..+.....-......+..+.|- |+.+++++.+- .||.. ...|..+.+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 6777788877654222223355667778775 66666664441 23321 1123333333333
Q ss_pred EeccCCeeEEEEeCCCCEEEEEECCC---------------eEEEEECCC-------CE-------EEEEecC-------
Q 009059 387 FKCQSGATQMRFQPRLGRILAAAIEN---------------YISILDVET-------QV-------CRLKLQG------- 430 (545)
Q Consensus 387 ~~~~~~v~~l~~sp~~~~l~~~~~dg---------------~I~i~d~~~-------~~-------~~~~~~~------- 430 (545)
+........+...+++++.++.+.+. .+.+|++.. ++ -+..+.+
T Consensus 233 v~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~ 312 (638)
T 3sbq_A 233 VIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKD 312 (638)
T ss_dssp EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBC
T ss_pred EEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccC
Confidence 33344445556677777777666422 255555320 00 0111111
Q ss_pred --------CCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCC---------CCcceEEEEeeCCCceEEEEEcCCCCEE
Q 009059 431 --------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG---------SKGECIHELSCTGNKFHSCVFHPTFPSL 491 (545)
Q Consensus 431 --------h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~---------~~~~~i~~~~~~~~~v~~~~~sp~~~~l 491 (545)
-......+.++|||+++++++ +.++.|+|++.. ....++......+-.....+|.++|...
T Consensus 313 ~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aY 392 (638)
T 3sbq_A 313 SKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAY 392 (638)
T ss_dssp CSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEE
T ss_pred CceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceE
Confidence 123446788999999999988 779999999742 1112222222345667788999999544
Q ss_pred EEEEcCCeEEEEeCCCC----------eEE-EeccCCCCeeEEE------EeCCCCEEEEEe
Q 009059 492 LVIGCYETLELWNMTEN----------KTL-TLSAHDKLVSSLA------ASTVNGMVASAS 536 (545)
Q Consensus 492 ~~~~~dg~I~iwd~~~~----------~~~-~~~~h~~~V~~l~------~spd~~~las~s 536 (545)
.+.--|..|..|++... ..+ .+.-|-. +-.+. -.+||++|++..
T Consensus 393 TtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 393 TTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEE
T ss_pred eeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEec
Confidence 44457889999998643 233 3333332 22332 257888888875
No 319
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.49 E-value=0.074 Score=52.33 Aligned_cols=193 Identities=14% Similarity=0.130 Sum_probs=116.7
Q ss_pred CeEEEEEcCCCCEEEEEe------------CCCcEEEEEcCC--CeEE-EEecc-----CCccEEEEEEcC--CCC-EEE
Q 009059 265 KVESCHFSPDGKLLATGG------------HDKKAVLWCTES--FTVK-STLEE-----HTQWITDVRFSP--SLS-RLA 321 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~------------~dg~I~lwd~~~--~~~~-~~l~~-----h~~~V~~l~~sp--~~~-~l~ 321 (545)
....+++.|+|..+++++ .+|.|.++|..+ .+.. ..+.+ ..-....|.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 344567788875555542 689999999873 2221 12222 234677777765 354 455
Q ss_pred EEe-C--CCeEEEEECCCCCee---eeEeccC-cccEEEEEEeCCCCcEEEEEc-----------------CCCcEEEEE
Q 009059 322 TSS-A--DRTVRVWDTENPDYS---LRTFTGH-STTVMSLDFHPSKEDLLCSCD-----------------NNSEIRYWS 377 (545)
Q Consensus 322 t~s-~--dg~I~vwd~~~~~~~---~~~~~~h-~~~V~~l~~~p~~~~ll~s~s-----------------~dg~I~lwd 377 (545)
.+. . +.+|.+|+++..... +..+.+. -...+.+.+.++|. ++++.. ..|.|+.+|
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 543 2 467888887654321 2233322 24578999999874 444543 124555565
Q ss_pred CCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCC-CE--EEEEecCCCCCEEEEEEcC-CCCEEEEEe-
Q 009059 378 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET-QV--CRLKLQGHKNQVHSVCWNT-SGEYLASVS- 451 (545)
Q Consensus 378 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~-~~--~~~~~~~h~~~I~~l~~sp-~g~~l~s~s- 451 (545)
. +++......-...+.++|+|+++.++++.. .+.|+.|++.. +. ....+ ...+..-.+++.+ +|.+.+++.
T Consensus 210 ~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 210 P--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp T--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred C--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence 5 333333333456789999999988888775 78999999863 32 22333 2346678899999 599888765
Q ss_pred CC-cEEEEEcC
Q 009059 452 DE-LVRVWSIG 461 (545)
Q Consensus 452 dg-~I~vwd~~ 461 (545)
++ .|..|+..
T Consensus 287 ~g~~v~~~~P~ 297 (355)
T 3sre_A 287 NGMRIFFYDAE 297 (355)
T ss_dssp CHHHHHSCCTT
T ss_pred CceEEEEECCC
Confidence 54 55555544
No 320
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.45 E-value=0.012 Score=56.60 Aligned_cols=228 Identities=11% Similarity=0.050 Sum_probs=113.6
Q ss_pred CCEEEEEeCC----CcEEEEEcCCCeEEEE--eccCCccEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCCeeeeE
Q 009059 275 GKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSLRT 343 (545)
Q Consensus 275 g~~latg~~d----g~I~lwd~~~~~~~~~--l~~h~~~V~~l~~sp~~~~l~t~s~d-----g~I~vwd~~~~~~~~~~ 343 (545)
+.+++.|+.+ ..+.+||..+.+-... +......-..+.+ ++.+++.|+.+ ..+.+||..+.......
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 3455566543 4678888877653322 1111111112222 56677777654 35888998876542211
Q ss_pred -eccCcccEEEEEEeCCCCcEEEEEcCCC-----cEEEEECCCCceeeEEeccCC--eeEEEEeCCCCEEEEEEC-----
Q 009059 344 -FTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI----- 410 (545)
Q Consensus 344 -~~~h~~~V~~l~~~p~~~~ll~s~s~dg-----~I~lwd~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~~~~~----- 410 (545)
+.........+.+ + +.+++.|+.++ .+.+||+.+.+....-..... -..++. .++..++.|+.
T Consensus 94 ~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 94 NMRDRRSTLGAAVL--N-GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASR 169 (302)
T ss_dssp CCSSCCBSCEEEEE--T-TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTT
T ss_pred CCCccccceEEEEE--C-CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCC
Confidence 1111111122222 2 35665665443 578899887664443222211 112222 24445555543
Q ss_pred --CCeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe-C-----CcEEEEEcCCCCCcceEEEEeeCCCceE
Q 009059 411 --ENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFH 480 (545)
Q Consensus 411 --dg~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s-d-----g~I~vwd~~~~~~~~~i~~~~~~~~~v~ 480 (545)
-..+.+||+.+.+-... +.........+.+ ++++++.|+ + ..+.+||+.+.. ...+..+.......
T Consensus 170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~r~~~- 245 (302)
T 2xn4_A 170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA-WRQVADMNMCRRNA- 245 (302)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE-EEEECCCSSCCBSC-
T ss_pred ccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC-EeeCCCCCCccccC-
Confidence 24589999988754332 2211112222222 566666665 3 268899987642 11121111111111
Q ss_pred EEEEcCCCCEEEEEEcCC-----eEEEEeCCCCeEEEe
Q 009059 481 SCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTL 513 (545)
Q Consensus 481 ~~~~sp~~~~l~~~~~dg-----~I~iwd~~~~~~~~~ 513 (545)
.++. -++..++.|+.++ .+.+||+.+++...+
T Consensus 246 ~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 246 GVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp EEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred eEEE-ECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence 2222 2566667776553 589999998876654
No 321
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.44 E-value=0.092 Score=50.40 Aligned_cols=233 Identities=12% Similarity=0.176 Sum_probs=153.5
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCc
Q 009059 269 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 348 (545)
Q Consensus 269 l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~ 348 (545)
.-.+|..+.||.-. ...+.|+|+++.+.+..+.-. ..|.-=+|-.+ +.|+-.+ +..|.-|+++....+.+.+..|.
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~-~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSS-SEEEEEE-SSEEEEEESSTTCCCEEEEECCG
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCC-CeEEEEc-CCcEEEEcccCCCCCceeeecch
Confidence 44588888888765 678999999998888777543 56777777654 3455443 45799999987666777777664
Q ss_pred ----ccEEEEEEeCCCCcEEEEEc------CCCcEEEEECCCCceeeEEeccCCeeE-EEEeCCC----CEEEEEEC---
Q 009059 349 ----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRL----GRILAAAI--- 410 (545)
Q Consensus 349 ----~~V~~l~~~p~~~~ll~s~s------~dg~I~lwd~~~~~~~~~~~~~~~v~~-l~~sp~~----~~l~~~~~--- 410 (545)
..|.....+++.+.++++|- -.|.+.+|..+.+.. ..++ +...+ ..+-.++ ..+++-..
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~~ 224 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIE--GHAASFAQFKMEGNAEESTLFCFAVRGQ 224 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEEC--CSEEEEEEECCTTCSSCEEEEEEEEEET
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc-ceee--eeeeeeEEEecCCCCCCceEEEEEEecC
Confidence 45777788888888877663 236788998875432 2222 11111 1121111 12333222
Q ss_pred -CCeEEEEECCCC---------EEEEEecC---CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC
Q 009059 411 -ENYISILDVETQ---------VCRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 476 (545)
Q Consensus 411 -dg~I~i~d~~~~---------~~~~~~~~---h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~ 476 (545)
.+.++|.++... +.+..+-. ..+...++..++.-.+++..+ -|.|++||+.++ .++..-+...
T Consensus 225 ~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTg---t~i~~nrIS~ 301 (365)
T 2xzh_A 225 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISG 301 (365)
T ss_dssp TEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCS
T ss_pred CCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccC---cEEEEeccCC
Confidence 268999988432 11111211 245667788888777777777 899999999998 7888777777
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 477 NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 477 ~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
..|...+.+....-+++....|.|.-..+++...+
T Consensus 302 d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 302 ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp SCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred CceEEecccCCCCcEEEEcCCCEEEEEEECcccEe
Confidence 78877776666555777778887776666655443
No 322
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.37 E-value=0.14 Score=51.04 Aligned_cols=234 Identities=13% Similarity=0.176 Sum_probs=154.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccC
Q 009059 268 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 347 (545)
Q Consensus 268 ~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h 347 (545)
+.-.+|..+.||.=. ...+.|+|+++...+..+.-.+ .|.-=.|-.+ +.|+-. .+..|.-|+++....+.+.+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lV-T~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALV-TDNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEE-CSSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEE-cCCeeEEecccCCCCchhheecc
Confidence 345677777777765 6799999999988887766443 4656666543 355555 35679999998766677777766
Q ss_pred c----ccEEEEEEeCCCCcEEEEEc------CCCcEEEEECCCCceeeEEeccCCeeE-EEEeCCC----CEEEEEEC--
Q 009059 348 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRL----GRILAAAI-- 410 (545)
Q Consensus 348 ~----~~V~~l~~~p~~~~ll~s~s------~dg~I~lwd~~~~~~~~~~~~~~~v~~-l~~sp~~----~~l~~~~~-- 410 (545)
. ..|.....+++.+.++++|- -.|.+.+|..+.+... .++. ...+ ..+-.++ ..+++-..
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIEG--HAASFAQFKMEGNAEESTLFCFAVRG 222 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE-EECC--SEEEEEEEECTTCSSEEEEEEEEECS
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc-hhee--eeeeeEEEecCCCCCCceEEEEEEec
Confidence 4 45777888899888887663 2467889988754322 2221 1111 1121121 12333222
Q ss_pred --CCeEEEEECCCC---------EEEEEec---CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC
Q 009059 411 --ENYISILDVETQ---------VCRLKLQ---GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 475 (545)
Q Consensus 411 --dg~I~i~d~~~~---------~~~~~~~---~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~ 475 (545)
.+.++|.++... +.+..+- ...+...++..++.-.+++..+ -|.|.+||+.++ .++..-...
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg---t~i~~nrIs 299 (494)
T 1bpo_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRIS 299 (494)
T ss_dssp TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECC
T ss_pred CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc---eeeeeeccc
Confidence 378999998532 1111111 1245667888888877777777 889999999998 788877777
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 476 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 476 ~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
...|...+.+....-+++....|.|.-..+++...+
T Consensus 300 ~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 300 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp SSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred CCceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 788877777766666777778887776666655443
No 323
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.33 E-value=0.011 Score=56.69 Aligned_cols=215 Identities=12% Similarity=0.067 Sum_probs=105.7
Q ss_pred CCCEEEEEe-CC-----CeEEEEECCCCCeeee-EeccCcccEEEEEEeCCCCcEEEEEcCC-----CcEEEEECCCCc-
Q 009059 316 SLSRLATSS-AD-----RTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGS- 382 (545)
Q Consensus 316 ~~~~l~t~s-~d-----g~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~~p~~~~ll~s~s~d-----g~I~lwd~~~~~- 382 (545)
++.+++.|+ .+ ..+.+||..+...... .+....... +++.. + +.+++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~-~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV-ASVSL-H-DRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-T-TEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccc-cEEEE-C-CEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 344555555 22 3688888877653211 111111111 22222 2 4566676644 468999998766
Q ss_pred --eeeEEeccCC--eeEEEEeCCCCEEEEEECC-----CeEEEEECCCCEEEE--EecCCCCCEEEEEEcCCCCEEEEEe
Q 009059 383 --CAGVFKCQSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 383 --~~~~~~~~~~--v~~l~~sp~~~~l~~~~~d-----g~I~i~d~~~~~~~~--~~~~h~~~I~~l~~sp~g~~l~s~s 451 (545)
....-..... -..+... ++..++.|+.+ ..+.+||+.+.+-.. .+........++.+ ++++++.|+
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 167 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG 167 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred CeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence 3332221111 1222222 44555555543 468999998765332 22222222222222 566666665
Q ss_pred -C-----CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-----CeEEEEeCCCCeEEEeccCC-CC
Q 009059 452 -D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHD-KL 519 (545)
Q Consensus 452 -d-----g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~-~~ 519 (545)
+ ..+.+||+.+.. ...+..+...... .+++. -++..++.|+.+ ..+.+||+.+.+...+.... ..
T Consensus 168 ~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~-~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 244 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGH-WTNVTPMATKRSG-AGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR 244 (301)
T ss_dssp BCSSCBCCCEEEEETTTTE-EEEECCCSSCCBS-CEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred CCCCcccceEEEEeCCCCc-EEeCCCCCccccc-ceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc
Confidence 3 368899987652 1112111111111 12222 255666666654 47999999988776443211 11
Q ss_pred eeEEEEeCCCCEEEEEeCCC
Q 009059 520 VSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 520 V~~l~~spd~~~las~s~Dg 539 (545)
....+..-++++++.|+.++
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 245 CYVGATVLRGRLYAIAGYDG 264 (301)
T ss_dssp BSCEEEEETTEEEEECCBCS
T ss_pred cceeEEEECCEEEEEcCcCC
Confidence 11112223677777777653
No 324
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.28 E-value=0.035 Score=53.64 Aligned_cols=225 Identities=8% Similarity=0.001 Sum_probs=113.2
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEE-EeccCCccEEEEEEcCCCCEEEEEeC-----C------CeEEEEECCCCCeeeeEe
Q 009059 277 LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA-----D------RTVRVWDTENPDYSLRTF 344 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~~~~-~l~~h~~~V~~l~~sp~~~~l~t~s~-----d------g~I~vwd~~~~~~~~~~~ 344 (545)
+++.|+ ..+.+||..+.+-.. .+..............++.+++.|+. . ..+.+||..+... ..+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW--LGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--EEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE--EEC
Confidence 344555 578999988866432 22222122233333457788888873 1 1377888887653 221
Q ss_pred ccCccc--EEEEEEeCCCCcEEEEEcCC--------CcEEEEECCCCceeeEEeccCC--eeEEEEeCCCCEEEEEEC-C
Q 009059 345 TGHSTT--VMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI-E 411 (545)
Q Consensus 345 ~~h~~~--V~~l~~~p~~~~ll~s~s~d--------g~I~lwd~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~~~~~-d 411 (545)
..-..+ -.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-..+.. -.+++. .++..++.|+. +
T Consensus 83 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~ 159 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGS 159 (315)
T ss_dssp CCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCT
T ss_pred CCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCC
Confidence 111111 1122222 34566666632 4588999987654332222111 122222 34455566655 2
Q ss_pred -----CeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe-CC-----cEEEEEcCCCCCcceEEEEeeCCCc
Q 009059 412 -----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNK 478 (545)
Q Consensus 412 -----g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s-dg-----~I~vwd~~~~~~~~~i~~~~~~~~~ 478 (545)
..+.+||+.+.+-... +........++.+ ++++++.|+ ++ .+.+||+.+.. ...+..+......
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~ 236 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK-WAPFEAFPQERSS 236 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE-EEEECCCSSCCBS
T ss_pred CCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe-EEECCCCCCcccc
Confidence 4799999988743321 1111112222222 566666666 43 58888987641 1122111111111
Q ss_pred eEEEEEcCCCCEEEEEEcC--------------CeEEEEeCCCCeEEEe
Q 009059 479 FHSCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTL 513 (545)
Q Consensus 479 v~~~~~sp~~~~l~~~~~d--------------g~I~iwd~~~~~~~~~ 513 (545)
.+++. -+++.++.|+.+ ..+.+||+.+.+...+
T Consensus 237 -~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 237 -LSLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp -CEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred -eeEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 12222 255666666653 2578999988876644
No 325
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.22 E-value=0.022 Score=56.83 Aligned_cols=132 Identities=18% Similarity=0.207 Sum_probs=89.2
Q ss_pred CCeEEEEECCCCEEEEEecCC----CCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCc---------ceEEEEee---
Q 009059 411 ENYISILDVETQVCRLKLQGH----KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG---------ECIHELSC--- 474 (545)
Q Consensus 411 dg~I~i~d~~~~~~~~~~~~h----~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~---------~~i~~~~~--- 474 (545)
++.|+.-++......+.+... -..|..+..+|+|.+||..++..|.|..+..+... .....+..
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~ 119 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE 119 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence 466666666533223333322 23678899999999999999999999999843210 11223332
Q ss_pred ---CCCceEEEEEcCCC---CEEEEEEcCCeEEEEeCCCCe--EEEe---------ccCCCCeeEEEEeCCCCEEEEEe-
Q 009059 475 ---TGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK--TLTL---------SAHDKLVSSLAASTVNGMVASAS- 536 (545)
Q Consensus 475 ---~~~~v~~~~~sp~~---~~l~~~~~dg~I~iwd~~~~~--~~~~---------~~h~~~V~~l~~spd~~~las~s- 536 (545)
...+|..+.|||-+ ..|++-..|+.|++||+.... +..+ ......|.+++|..++-.|...+
T Consensus 120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~ 199 (452)
T 3pbp_A 120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNT 199 (452)
T ss_dssp C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEEC
T ss_pred ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEec
Confidence 24679999999965 579999999999999997522 1111 12336788999999776555544
Q ss_pred -CCCcEE
Q 009059 537 -HDKCVK 542 (545)
Q Consensus 537 -~Dg~I~ 542 (545)
..|.|+
T Consensus 200 t~~GDIY 206 (452)
T 3pbp_A 200 TEGGDIF 206 (452)
T ss_dssp TTSCEEE
T ss_pred CCCCCEE
Confidence 777775
No 326
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.22 E-value=0.029 Score=53.88 Aligned_cols=210 Identities=10% Similarity=0.032 Sum_probs=105.8
Q ss_pred CEEEEEeC--CCeEEEEECCCCCeeee-EeccCcccEEEEEEeCCCCcEEEEEcCC----CcEEEEECCCCceeeEEecc
Q 009059 318 SRLATSSA--DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFKCQ 390 (545)
Q Consensus 318 ~~l~t~s~--dg~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~~p~~~~ll~s~s~d----g~I~lwd~~~~~~~~~~~~~ 390 (545)
.+++.|+. ...+.+||..+.+.... .+.........+.+ ++.+++.|+.+ ..+.+||+.+.+....-...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 34555654 35788899887654211 11111111222222 24566677644 57889999887654433222
Q ss_pred CC--eeEEEEeCCCCEEEEEECC------CeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe-C-------
Q 009059 391 SG--ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D------- 452 (545)
Q Consensus 391 ~~--v~~l~~sp~~~~l~~~~~d------g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s-d------- 452 (545)
.. -..++. -++..++.|+.+ ..+.+||..+.+-... +.........+.+ ++++++.|+ +
T Consensus 90 ~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 90 TPRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp SCCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCE
T ss_pred ccccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCccc
Confidence 22 112222 244556666654 4699999988754332 1111112222222 566666665 2
Q ss_pred --CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-----CeEEEEeCCCCeEEEeccCC---CCeeE
Q 009059 453 --ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHD---KLVSS 522 (545)
Q Consensus 453 --g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~---~~V~~ 522 (545)
..+.+||+.+.. ...+..+..... -.+++.. +++.++.|+.+ ..+.+||+.+++...+.... ....+
T Consensus 167 ~~~~~~~yd~~~~~-W~~~~~~p~~r~-~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 243 (306)
T 3ii7_A 167 VLNSCEVYDPATET-WTELCPMIEARK-NHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC 243 (306)
T ss_dssp ECCCEEEEETTTTE-EEEECCCSSCCB-SCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred ccceEEEeCCCCCe-EEECCCccchhh-cceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence 348899987752 111211111111 1222222 55666666543 36899999988766443211 11222
Q ss_pred EEEeCCCCEEEEEeCC
Q 009059 523 LAASTVNGMVASASHD 538 (545)
Q Consensus 523 l~~spd~~~las~s~D 538 (545)
+.+ ++++++.|+.+
T Consensus 244 ~~~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 244 AAV--GSIVYVLAGFQ 257 (306)
T ss_dssp EEE--TTEEEEEECBC
T ss_pred EEE--CCEEEEEeCcC
Confidence 222 67788888755
No 327
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.13 E-value=0.022 Score=54.90 Aligned_cols=231 Identities=7% Similarity=0.003 Sum_probs=115.4
Q ss_pred cCCCCEEEEEeCC----CcEEEEEcCCCeEEEE--eccCCccEEEEEEcCCCCEEEEEeC----C-----CeEEEEECCC
Q 009059 272 SPDGKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSA----D-----RTVRVWDTEN 336 (545)
Q Consensus 272 spdg~~latg~~d----g~I~lwd~~~~~~~~~--l~~h~~~V~~l~~sp~~~~l~t~s~----d-----g~I~vwd~~~ 336 (545)
.-++.+++.|+.+ ..+.+||..+.+-... +......-..+.+ ++.+++.|+. + ..+.+||..+
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 3356677777642 4688899877553322 1111111122222 5667777665 2 3588889887
Q ss_pred CCeeee-EeccCcccEEEEEEeCCCCcEEEEEcCC-----CcEEEEECCCCceeeEEeccCC--eeEEEEeCCCCEEEEE
Q 009059 337 PDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAA 408 (545)
Q Consensus 337 ~~~~~~-~~~~h~~~V~~l~~~p~~~~ll~s~s~d-----g~I~lwd~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~~~ 408 (545)
...... .+.........+.+ + ..+++.|+.+ ..+.+||+.+.+....-..... -..++.. ++..++.|
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~G 175 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVG 175 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEC
T ss_pred CeEeECCCCCcCccccEEEEE--C-CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEe
Confidence 653211 11111111222222 3 4566566533 3688899987654433222111 1122222 44555565
Q ss_pred ECC-----CeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe-C-----CcEEEEEcCCCCCcceEEEEeeC
Q 009059 409 AIE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCT 475 (545)
Q Consensus 409 ~~d-----g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s-d-----g~I~vwd~~~~~~~~~i~~~~~~ 475 (545)
+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+ + ..+.+||+.+.. ...+..+...
T Consensus 176 G~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~ 252 (308)
T 1zgk_A 176 GFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET-WTFVAPMKHR 252 (308)
T ss_dssp CBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE-EEECCCCSSC
T ss_pred CCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc-EEECCCCCCC
Confidence 543 4689999987754321 1111112223333 566666665 3 368999987642 1111111111
Q ss_pred CCceEEEEEcCCCCEEEEEEcC-----CeEEEEeCCCCeEEEe
Q 009059 476 GNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTL 513 (545)
Q Consensus 476 ~~~v~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~ 513 (545)
... .+++. -+++.++.|+.+ ..+.+||+.+.+...+
T Consensus 253 r~~-~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 253 RSA-LGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp CBS-CEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred ccc-eEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence 111 12222 256666666644 3788999988876543
No 328
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.13 E-value=0.26 Score=50.27 Aligned_cols=104 Identities=12% Similarity=0.114 Sum_probs=61.4
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee-eeEecc------CcccEEEEEEeCC---CCcEEEEEcC------
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTG------HSTTVMSLDFHPS---KEDLLCSCDN------ 369 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~-~~~~~~------h~~~V~~l~~~p~---~~~ll~s~s~------ 369 (545)
...+.|+|.|+|+++++-...+.|++++..++... +..+.. ....+..|+|+|+ +..++++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45679999999987776544457888876544432 222221 2456789999995 5556555432
Q ss_pred ------CCcEEEEECCCC--c-----eee-EEec--cCCeeEEEEeCCCCEEEEEE
Q 009059 370 ------NSEIRYWSINNG--S-----CAG-VFKC--QSGATQMRFQPRLGRILAAA 409 (545)
Q Consensus 370 ------dg~I~lwd~~~~--~-----~~~-~~~~--~~~v~~l~~sp~~~~l~~~~ 409 (545)
...|.-|++... . .+. .+.. ......+.|.|++..+++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 234555655322 1 111 1111 13368899999987666654
No 329
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.12 E-value=0.13 Score=49.44 Aligned_cols=233 Identities=5% Similarity=-0.074 Sum_probs=132.5
Q ss_pred CCCCEEEEEe--CCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC--------------CeEEEEECCC
Q 009059 273 PDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------------RTVRVWDTEN 336 (545)
Q Consensus 273 pdg~~latg~--~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d--------------g~I~vwd~~~ 336 (545)
.++.+|+... .++.|...+.+... ...+... .+--+++++.+|+.+... ..|+..++..
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 4667776664 24566666654433 3333221 123457788888877543 4677777775
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEE---cCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-CC
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN 412 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~---s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg 412 (545)
... ..+... . +..|+++++.++++- ..+..|+..++........... .+ ..++++++.|+.... ..
T Consensus 98 ~~~--~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~--~~--~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 98 HGS--TVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH--YL--FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp CCC--EEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS--CC--CCSEEETTEEEEECTTTC
T ss_pred Ccc--eEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC--Cc--eEeeEECCEEEEEeCCCc
Confidence 542 223222 1 225677777777665 3455677777764443333322 22 456778888887765 67
Q ss_pred eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-C-C-cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCC
Q 009059 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-E-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 489 (545)
Q Consensus 413 ~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-d-g-~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~ 489 (545)
.|++.++..+.....+.+ ... ..+.|++.+|+-.. + + .|..-++..... . .+. ...+ ..|+|++.
T Consensus 168 ~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~---~Lt--~~~~--~~~~~~g~ 235 (302)
T 3s25_A 168 QLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-V---VLT--EANI--EHYNVYGS 235 (302)
T ss_dssp CEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-E---ECS--CSCE--EEEEEETT
T ss_pred eEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-E---EEe--CCCc--ceEEECCC
Confidence 899999987765544432 222 34568998888776 3 2 566666655432 1 111 2223 34788888
Q ss_pred EEEEEEc--CCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEe
Q 009059 490 SLLVIGC--YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 490 ~l~~~~~--dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s 536 (545)
+|+.+.. .+.|..-++.......+... .+.+ +++.+.+|+-..
T Consensus 236 ~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~--~~~~--i~i~~d~Iy~td 280 (302)
T 3s25_A 236 LIFYQRGGDNPALCVVKNDGTGFKELAKG--EFCN--INVTSQYVYFTD 280 (302)
T ss_dssp EEEEEECSSSCEEEEEETTSCCCEEEEES--CEEE--EEECSSEEEEEE
T ss_pred EEEEEECCCCcEEEEEECCCCccEEeeCC--ccce--EEEeCCEEEEEE
Confidence 8877643 35788888877654433322 2333 334455555444
No 330
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.95 E-value=0.16 Score=48.99 Aligned_cols=226 Identities=8% Similarity=-0.002 Sum_probs=109.5
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEE-EeccCCccEEEEEEcCCCCEEEEEeC----CC-------eEEEEECCCCCeeee-E
Q 009059 277 LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA----DR-------TVRVWDTENPDYSLR-T 343 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~~~~-~l~~h~~~V~~l~~sp~~~~l~t~s~----dg-------~I~vwd~~~~~~~~~-~ 343 (545)
+++.|+. .+.+||..+.+-.. .+..............++.+++.|+. ++ .+.+||..+...... .
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 3444443 47888988766433 12211112222333456778888873 12 277788876553211 1
Q ss_pred eccCcccEEEEEEeCCCCcEEEEEcCC-------CcEEEEECCCCceeeEEeccCCe--eEEEEeCCCCEEEEEEC----
Q 009059 344 FTGHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAI---- 410 (545)
Q Consensus 344 ~~~h~~~V~~l~~~p~~~~ll~s~s~d-------g~I~lwd~~~~~~~~~~~~~~~v--~~l~~sp~~~~l~~~~~---- 410 (545)
+....... +++.. + +.+++.|+.+ ..+.+||+.+.+-...-...... .+++. .++..++.|+.
T Consensus 96 ~p~~r~~~-~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 96 LPSARCLF-GLGEV-D-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDK 171 (318)
T ss_dssp BSSCBCSC-EEEEE-T-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSS
T ss_pred CCcccccc-ceEEE-C-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCC
Confidence 11111111 22222 2 4566566543 25888998876644332222221 12222 34455555553
Q ss_pred --CCeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe-C-----CcEEEEEcCCCCCcceEEEEeeCCCceE
Q 009059 411 --ENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFH 480 (545)
Q Consensus 411 --dg~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s-d-----g~I~vwd~~~~~~~~~i~~~~~~~~~v~ 480 (545)
-..+.+||+.+.+-... +........++.+ ++++++.|+ + ..+.+||+.+.. ...+..+...... .
T Consensus 172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~-~ 247 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK-WEVMTEFPQERSS-I 247 (318)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC-EEECCCCSSCCBS-C
T ss_pred CccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe-EEECCCCCCcccc-e
Confidence 24699999988753332 2111112222222 566666665 2 257788987652 1111111111111 1
Q ss_pred EEEEcCCCCEEEEEEcC--------------CeEEEEeCCCCeEEEe
Q 009059 481 SCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTL 513 (545)
Q Consensus 481 ~~~~sp~~~~l~~~~~d--------------g~I~iwd~~~~~~~~~ 513 (545)
+++. -++..++.|+.+ ..+.+||+.+.+...+
T Consensus 248 ~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 248 SLVS-LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEEE-ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEEE-ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 2222 245666666543 3688999988876644
No 331
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.90 E-value=0.091 Score=50.18 Aligned_cols=183 Identities=9% Similarity=0.083 Sum_probs=93.9
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCeEEEE--eccCCccEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCCeee
Q 009059 274 DGKLLATGGHD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENPDYSL 341 (545)
Q Consensus 274 dg~~latg~~d-----g~I~lwd~~~~~~~~~--l~~h~~~V~~l~~sp~~~~l~t~s~dg-----~I~vwd~~~~~~~~ 341 (545)
++++++.|+.+ ..+.+||..+.+-... +......-..+.+ ++++++.|+.++ .+.+||+.+.....
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 66777777754 3588899877553322 2211112222223 567777777653 57788888765422
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcCC-------CcEEEEECCCCceeeEEeccCC--eeEEEEeCCCCEEEEEECC-
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE- 411 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~d-------g~I~lwd~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~~~~~d- 411 (545)
..-......-.+++.. + ..+++.|+.+ ..+.+||+.+.+....-..... -..+... ++..++.|+.+
T Consensus 139 ~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~ 215 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGVV-G-GLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDG 215 (302)
T ss_dssp ECCCSSCCBSCEEEEE-T-TEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSS
T ss_pred cCCCCCcccCceEEEE-C-CEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCC
Confidence 1111111111122222 2 4566566532 3588999987764443222111 1222222 44556666553
Q ss_pred ----CeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe-CC-----cEEEEEcCCC
Q 009059 412 ----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSG 463 (545)
Q Consensus 412 ----g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s-dg-----~I~vwd~~~~ 463 (545)
..+.+||+++.+-... +.........+.+ ++++++.|+ ++ .+.+||+.+.
T Consensus 216 ~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 216 PLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp SSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 4799999988754332 1111111122222 566666665 43 4888888764
No 332
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.88 E-value=0.27 Score=47.16 Aligned_cols=176 Identities=7% Similarity=0.009 Sum_probs=106.9
Q ss_pred EEEcCCCCEEEEEeCC--------------CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEe--C--CCeEE
Q 009059 269 CHFSPDGKLLATGGHD--------------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--A--DRTVR 330 (545)
Q Consensus 269 l~~spdg~~latg~~d--------------g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s--~--dg~I~ 330 (545)
--++++|++|+.+... ..|+..+++..+...... .. +..|++++++|+-.. . +..|.
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~-~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP-DP----CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC-SC----EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec-CC----ccEEEEeCCEEEEEeecCCCCceEE
Confidence 4457788888877543 357777777655333222 11 236777888888776 3 34555
Q ss_pred EEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC
Q 009059 331 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 410 (545)
Q Consensus 331 vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~ 410 (545)
..++.... ...+..+.. ..|+++++.++++......|.+.++..+.....+. ... ...+.|++++|+....
T Consensus 133 ~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~-~~~~~P~g~~iy~t~~ 203 (302)
T 3s25_A 133 RIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNC-YKPVVLDDTNVYYMDV 203 (302)
T ss_dssp EEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCE-EEEEEEETTEEEEEEG
T ss_pred EEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCc-cceeeecCCEEEEEEc
Confidence 55665332 344444432 45677888888776656789999988766544433 333 2346688899888765
Q ss_pred C--CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe---CCcEEEEEcCCC
Q 009059 411 E--NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSG 463 (545)
Q Consensus 411 d--g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s---dg~I~vwd~~~~ 463 (545)
. ..|..-++..... ..+. ...+ ..|+|++.+|..+. .+.|..-++...
T Consensus 204 ~~~~~I~~~~ldG~~~-~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 204 NRDNAIVHVNINNPNP-VVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp GGTTEEEEECSSSCCC-EECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCcEEEEEECCCCCe-EEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 4 3677777776542 2332 2334 34778888887664 236666666543
No 333
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.87 E-value=0.13 Score=49.57 Aligned_cols=210 Identities=9% Similarity=0.007 Sum_probs=103.2
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcC-----C------CcEEEEECCCCceeeEE
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----N------SEIRYWSINNGSCAGVF 387 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~-----d------g~I~lwd~~~~~~~~~~ 387 (545)
+++.|+ ..+.+||..+.+.....+..............+ +.+++.|+. . ..+..||+.+.+....-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTT-CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEEC-CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344454 568999998877543222211112222222334 345556652 1 12778898877643322
Q ss_pred eccCCe--eEEEEeCCCCEEEEEECC--------CeEEEEECCCCEEEE--EecCCCCCEEEEEEcCCCCEEEEEeC---
Q 009059 388 KCQSGA--TQMRFQPRLGRILAAAIE--------NYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVSD--- 452 (545)
Q Consensus 388 ~~~~~v--~~l~~sp~~~~l~~~~~d--------g~I~i~d~~~~~~~~--~~~~h~~~I~~l~~sp~g~~l~s~sd--- 452 (545)
...... ..++.. ++..++.|+.+ ..+.+||..+.+-.. .+.........+. -++++++.|+.
T Consensus 84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSD 160 (315)
T ss_dssp CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTT
T ss_pred CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCC
Confidence 222211 122222 44455555532 469999998875332 1111111112222 35566666652
Q ss_pred ----CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC-----eEEEEeCCCCeEEEeccCC--CCee
Q 009059 453 ----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHD--KLVS 521 (545)
Q Consensus 453 ----g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-----~I~iwd~~~~~~~~~~~h~--~~V~ 521 (545)
..+.+||+.+.. ...+..+..... -.+++. -+++.++.|+.++ .+.+||+.+.+...+.... ..-.
T Consensus 161 ~~~~~~~~~yd~~~~~-W~~~~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 237 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFE-WKELAPMQTARS-LFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSL 237 (315)
T ss_dssp SCBCCCEEEEETTTTE-EEECCCCSSCCB-SCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSC
T ss_pred CcccceEEEEeCCCCe-EEECCCCCCchh-ceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccce
Confidence 368899987642 111111111111 112222 2566677777654 6899999988776543211 1111
Q ss_pred EEEEeCCCCEEEEEeCC
Q 009059 522 SLAASTVNGMVASASHD 538 (545)
Q Consensus 522 ~l~~spd~~~las~s~D 538 (545)
+++. -++++++.|+.+
T Consensus 238 ~~~~-~~~~l~v~GG~~ 253 (315)
T 4asc_A 238 SLVS-LVGTLYAIGGFA 253 (315)
T ss_dssp EEEE-ETTEEEEEEEEE
T ss_pred eEEE-ECCEEEEECCcc
Confidence 2222 356777777764
No 334
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.85 E-value=0.042 Score=54.04 Aligned_cols=231 Identities=8% Similarity=-0.070 Sum_probs=112.3
Q ss_pred CCCEEEEEeCC-CcEEEEEcCC--C--eEEEEec-cCCccEEEEEEcCCCCEEEEEeC-C---------CeEEEEECCCC
Q 009059 274 DGKLLATGGHD-KKAVLWCTES--F--TVKSTLE-EHTQWITDVRFSPSLSRLATSSA-D---------RTVRVWDTENP 337 (545)
Q Consensus 274 dg~~latg~~d-g~I~lwd~~~--~--~~~~~l~-~h~~~V~~l~~sp~~~~l~t~s~-d---------g~I~vwd~~~~ 337 (545)
++++++.|+.+ ..+.+||..+ . +.+..+. .....-.++.+ ++++++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56677777643 5688888863 2 2222222 11111222223 5667777765 2 36888998876
Q ss_pred CeeeeEecc-CcccEEEEEEeCCCCcEEEEEcCC---------------------------------------CcEEEEE
Q 009059 338 DYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN---------------------------------------SEIRYWS 377 (545)
Q Consensus 338 ~~~~~~~~~-h~~~V~~l~~~p~~~~ll~s~s~d---------------------------------------g~I~lwd 377 (545)
......... ....-.++.. .+ ..+++.|+.+ ..+.+||
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV-HN-GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE-ET-TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred cEEECCCCCCcccccceEEE-EC-CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 542211111 1111112222 23 4566677644 4789999
Q ss_pred CCCCceeeEEeccC--Ce-eEEEEeCCCCEEEEEEC------CCeEEEEEC--CCCEEEE--EecCCCCCEEEEEEcCCC
Q 009059 378 INNGSCAGVFKCQS--GA-TQMRFQPRLGRILAAAI------ENYISILDV--ETQVCRL--KLQGHKNQVHSVCWNTSG 444 (545)
Q Consensus 378 ~~~~~~~~~~~~~~--~v-~~l~~sp~~~~l~~~~~------dg~I~i~d~--~~~~~~~--~~~~h~~~I~~l~~sp~g 444 (545)
+.+.+....-.... .. .+++.. ++..++.|+. ...+.+||+ .+.+-.. .+..........+...++
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 253 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND 253 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECC
Confidence 98876554433222 12 233333 4355555543 346788887 4433221 111111111111122356
Q ss_pred CEEEEEe-C----------------------CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---
Q 009059 445 EYLASVS-D----------------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--- 498 (545)
Q Consensus 445 ~~l~s~s-d----------------------g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg--- 498 (545)
++++.|+ + ..+.+||+.+.. ...+..+........ ++..+++.++.|+.++
T Consensus 254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~ 330 (357)
T 2uvk_A 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-WDKSGELSQGRAYGV--SLPWNNSLLIIGGETAGGK 330 (357)
T ss_dssp EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBSSE--EEEETTEEEEEEEECGGGC
T ss_pred EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-eeeCCCCCCCcccce--eEEeCCEEEEEeeeCCCCC
Confidence 6666665 2 257889987653 233333332222222 2334677778888653
Q ss_pred ---eEEEEeCCCCeEEE
Q 009059 499 ---TLELWNMTENKTLT 512 (545)
Q Consensus 499 ---~I~iwd~~~~~~~~ 512 (545)
.|.++++++++.+.
T Consensus 331 ~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 331 AVTDSVLITVKDNKVTV 347 (357)
T ss_dssp EEEEEEEEEC-CCSCEE
T ss_pred EeeeEEEEEEcCcEeEe
Confidence 57777999888774
No 335
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.80 E-value=0.13 Score=51.20 Aligned_cols=142 Identities=11% Similarity=0.108 Sum_probs=93.2
Q ss_pred eCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-----CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCE--------
Q 009059 357 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQMRFQPRLGRILAAAIENYISILDVETQV-------- 423 (545)
Q Consensus 357 ~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-----~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~-------- 423 (545)
..++..+++.- ++.||.-++......+.+... ..+..+..+|+|.+++.. .+..|.|..+..+.
T Consensus 29 ~~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 29 SQNGTRIVFIQ--DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp ETTTTEEEEEE--TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHH
T ss_pred EcCCCEEEEEE--CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCccccc
Confidence 34455555333 578888888755545555544 257889999997666555 56688888887321
Q ss_pred ----EEEEecC------CCCCEEEEEEcCCC---CEEEEEe-CCcEEEEEcCCCCCcceEEEEe---------eCCCceE
Q 009059 424 ----CRLKLQG------HKNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELS---------CTGNKFH 480 (545)
Q Consensus 424 ----~~~~~~~------h~~~I~~l~~sp~g---~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~---------~~~~~v~ 480 (545)
..+.+.- ...+|..+.|+|-+ ..|++-. |+.|++||+..... ... .++ .....|.
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~-~P~-~L~k~~~~fg~d~~~~ev~ 183 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE-KPI-VLNKPNNSFGLDARVNDIT 183 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS-CCE-EESCCCSEEESCSSCCCEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC-CCc-chhccccccCCCcccceEE
Confidence 1122221 25689999999954 4555555 99999999987322 222 222 2236788
Q ss_pred EEEEcCCCCEEEEEE--cCCeEEEE
Q 009059 481 SCVFHPTFPSLLVIG--CYETLELW 503 (545)
Q Consensus 481 ~~~~sp~~~~l~~~~--~dg~I~iw 503 (545)
+++|..++-.|++.. ..|.|+-.
T Consensus 184 S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 184 DLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEcCCCcEEEEEecCCCCCEEEE
Confidence 999999988888866 77877643
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.039 Score=53.84 Aligned_cols=191 Identities=6% Similarity=-0.016 Sum_probs=103.2
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccC-cccEEEEEE--eCCCCcEEEEE-cCCCcEEEEECCCCceeeEEeccCCe
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDF--HPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGA 393 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h-~~~V~~l~~--~p~~~~ll~s~-s~dg~I~lwd~~~~~~~~~~~~~~~v 393 (545)
.+++.++.||.|.-+|..+++. +..+... ..++....- .+.+..+++.. ..||.|+.++..+|.....+....-+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~-~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHI-IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEE-EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcE-EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 4788899999999999998875 4444322 122222110 01122444343 57999999999988665544432211
Q ss_pred e--EEEEe-----------CCCCEEEEEECCCeEEEEECCCCEEEEEecCCC--CC-----EEEEEEc-----CCCCEEE
Q 009059 394 T--QMRFQ-----------PRLGRILAAAIENYISILDVETQVCRLKLQGHK--NQ-----VHSVCWN-----TSGEYLA 448 (545)
Q Consensus 394 ~--~l~~s-----------p~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~--~~-----I~~l~~s-----p~g~~l~ 448 (545)
. -+... ..++.+++++.+|.++..|+++|+.+..+.... .. ..|.... ..+..|+
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1 01111 145788999999999999999999999886431 10 1112111 1234555
Q ss_pred EEe-CCcEEEEEcCCCCCcce-EEEEeeCCCc--e-EEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 449 SVS-DELVRVWSIGSGSKGEC-IHELSCTGNK--F-HSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 449 s~s-dg~I~vwd~~~~~~~~~-i~~~~~~~~~--v-~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
.+. +..+.+.+ +++..... .......... + ..-..+.++.+ ++++.||.|+.+|..+++.+
T Consensus 170 ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~ 235 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIAR 235 (339)
T ss_dssp EEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEE
T ss_pred EecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEE
Confidence 555 66666665 33321111 1111111000 0 00001123554 55788888888888777765
No 337
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.73 E-value=0.079 Score=47.87 Aligned_cols=172 Identities=14% Similarity=0.021 Sum_probs=98.2
Q ss_pred CcEEEEEcCCCcEEEEECCCCc------eeeEEec--cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE------EE
Q 009059 361 EDLLCSCDNNSEIRYWSINNGS------CAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVC------RL 426 (545)
Q Consensus 361 ~~ll~s~s~dg~I~lwd~~~~~------~~~~~~~--~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~------~~ 426 (545)
+.+|+...+| +++.=....+. ....+.. -..+..++|+|++. |+++ .+|.++-.+..+... -.
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE-eCCeEEEECCCCCCccccccccc
Confidence 3455566666 66665555443 1122222 14678999999755 5555 888888888755111 11
Q ss_pred Eec--CCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcce----EEEEeeCCCceEEEEEcCCCCEEEEEEcCCeE
Q 009059 427 KLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC----IHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 500 (545)
Q Consensus 427 ~~~--~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~----i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I 500 (545)
.+- +-. .-.++.|.|+|.+.++ +||.|+-++-.+.....- ...-...-..+..+.|.|+|. |+++. ++.+
T Consensus 81 ~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~-dg~l 156 (236)
T 1tl2_A 81 KIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH-GQQF 156 (236)
T ss_dssp EEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE-TTEE
T ss_pred Eecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe-CCcE
Confidence 111 111 1468899999998888 889888777533221111 111111225689999999998 45555 8876
Q ss_pred EEEeCCCCeE------EEec--cCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 009059 501 ELWNMTENKT------LTLS--AHDKLVSSLAASTVNGMVASASHDKCV 541 (545)
Q Consensus 501 ~iwd~~~~~~------~~~~--~h~~~V~~l~~spd~~~las~s~Dg~I 541 (545)
+-+....... .... ..-..-..+.|.+++.+.++. +|.+
T Consensus 157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 5443332210 0111 222334456788988877666 6654
No 338
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.51 E-value=0.12 Score=59.07 Aligned_cols=218 Identities=10% Similarity=0.172 Sum_probs=130.4
Q ss_pred CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcE
Q 009059 284 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 363 (545)
Q Consensus 284 dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l 363 (545)
...|.|.|+.....+.+-.- .--+.-.+|..+.||.-. ..++.|||+++... +..+.- ...|.-=.|-... .+
T Consensus 47 ~~~vvIidl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~k-lks~~~-~e~VvfWkWis~~-~l 119 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLN-TV 119 (1630)
T ss_pred CceEEEEECCCCCCcccccc---cchhhccCCCcceEEEec-CCeEEEeehHHhhh-hccccc-CCCceEEEecCCC-ee
Confidence 34788888877554422110 111234577777666654 67999999997654 555543 3456666776543 23
Q ss_pred EEEEcCCCcEEEEECCC-CceeeEEec-----cCCeeEEEEeCCCCEEEEEEC-------CCeEEEEECCCCEEEEEecC
Q 009059 364 LCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG 430 (545)
Q Consensus 364 l~s~s~dg~I~lwd~~~-~~~~~~~~~-----~~~v~~l~~sp~~~~l~~~~~-------dg~I~i~d~~~~~~~~~~~~ 430 (545)
.+++ +..|+.|++.. ..+++.|.. ...|.....+++.++++..+- .|.+.+|..+.+.. ..+.|
T Consensus 120 ~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~ieg 196 (1630)
T 1xi4_A 120 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEG 196 (1630)
T ss_pred EEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhH
Confidence 3233 66899999974 344444432 234677778888888776552 47888888875532 23455
Q ss_pred CCCCEEEEEEc---CCCCEEEEEe----CCcEEEEEcCCCCC-----c-ceEEEEe---eCCCceEEEEEcCCCCEEEEE
Q 009059 431 HKNQVHSVCWN---TSGEYLASVS----DELVRVWSIGSGSK-----G-ECIHELS---CTGNKFHSCVFHPTFPSLLVI 494 (545)
Q Consensus 431 h~~~I~~l~~s---p~g~~l~s~s----dg~I~vwd~~~~~~-----~-~~i~~~~---~~~~~v~~~~~sp~~~~l~~~ 494 (545)
|.+....+... +...+++.+. .+.++|.++..... . ..+..+- ....-..++..++....++..
T Consensus 197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~i 276 (1630)
T 1xi4_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (1630)
T ss_pred hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEE
Confidence 54443333321 1122333333 25888988865300 0 0111111 112334567888888999999
Q ss_pred EcCCeEEEEeCCCCeEE
Q 009059 495 GCYETLELWNMTENKTL 511 (545)
Q Consensus 495 ~~dg~I~iwd~~~~~~~ 511 (545)
+..|.|++||+.++.++
T Consensus 277 tk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 277 TKYGYIHLYDLETGTCI 293 (1630)
T ss_pred ecCceEEEEecccchhh
Confidence 99999999999999877
No 339
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.46 E-value=0.088 Score=50.58 Aligned_cols=214 Identities=7% Similarity=-0.014 Sum_probs=103.9
Q ss_pred CCCEEEEEeCC----CeEEEEECCCCCeeee-EeccCcccEEEEEEeCCCCcEEEEEcC----C-----CcEEEEECCCC
Q 009059 316 SLSRLATSSAD----RTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDN----N-----SEIRYWSINNG 381 (545)
Q Consensus 316 ~~~~l~t~s~d----g~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~~p~~~~ll~s~s~----d-----g~I~lwd~~~~ 381 (545)
++.+++.|+.+ ..+.+||..+...... .+....... +++.. + +.+++.|+. + ..+.+||+.+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-G-GLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-T-TEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-C-CEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 44555555531 3578888876553211 111111111 22222 2 456666654 2 46888999876
Q ss_pred ceeeEEeccCC--eeEEEEeCCCCEEEEEECC-----CeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe-
Q 009059 382 SCAGVFKCQSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS- 451 (545)
Q Consensus 382 ~~~~~~~~~~~--v~~l~~sp~~~~l~~~~~d-----g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s- 451 (545)
+....-..... -..++.. ++..++.|+.+ ..+.+||+.+.+-... +.........+.+ ++++++.|+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 177 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF 177 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred eEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence 54432221111 1122222 44555555532 4689999988754332 1111112222333 566666665
Q ss_pred C-----CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-----CeEEEEeCCCCeEEEeccCCC--C
Q 009059 452 D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDK--L 519 (545)
Q Consensus 452 d-----g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~~--~ 519 (545)
+ ..+.+||+.+..- ..+..+.........+.+ ++..++.|+.+ ..+.+||+.+.+...+..... .
T Consensus 178 ~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 254 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEW-RMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS 254 (308)
T ss_dssp CSSCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB
T ss_pred CCCCcCceEEEEeCCCCeE-eeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc
Confidence 3 3688999876421 111111111111222222 56666666654 479999999887764432111 1
Q ss_pred eeEEEEeCCCCEEEEEeCCC
Q 009059 520 VSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 520 V~~l~~spd~~~las~s~Dg 539 (545)
-.+++. -++++++.|+.++
T Consensus 255 ~~~~~~-~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 255 ALGITV-HQGRIYVLGGYDG 273 (308)
T ss_dssp SCEEEE-ETTEEEEECCBCS
T ss_pred ceEEEE-ECCEEEEEcCcCC
Confidence 112222 2567777777553
No 340
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.44 E-value=0.12 Score=59.10 Aligned_cols=235 Identities=12% Similarity=0.168 Sum_probs=140.5
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccC-
Q 009059 269 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH- 347 (545)
Q Consensus 269 l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h- 347 (545)
.-.+|..+.||.-. ..++.|+|+++...+..+.- ...|.-=.|-.+. .|+-.+ +..|..|++.....+.+.+..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 34567777777654 67999999998777666543 3456666775443 444442 4579999998655566666655
Q ss_pred ---cccEEEEEEeCCCCcEEEEEc------CCCcEEEEECCCCceeeEEeccC-CeeEEEE--eCCCCEEEEEEC----C
Q 009059 348 ---STTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQS-GATQMRF--QPRLGRILAAAI----E 411 (545)
Q Consensus 348 ---~~~V~~l~~~p~~~~ll~s~s------~dg~I~lwd~~~~~~~~~~~~~~-~v~~l~~--sp~~~~l~~~~~----d 411 (545)
...|.....+++.+.++++|= -.|.+.+|.++.+.... +..+. ....+.. .+....+++-.. .
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~-iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-IEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh-hhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 456777788888888887663 35788889887543211 11110 0111111 111122333222 3
Q ss_pred CeEEEEECCCC---EE------EEEecC---CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCc
Q 009059 412 NYISILDVETQ---VC------RLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 478 (545)
Q Consensus 412 g~I~i~d~~~~---~~------~~~~~~---h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~ 478 (545)
+.++|.++... .. +..+.. ..+...++..++.-.++...+ -|.|.+||+.++ .++..-......
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~---~~i~~~ris~~~ 302 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGET 302 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc---hhhhhccccCCc
Confidence 68888888542 11 111111 133455677777666666666 889999999998 566655555666
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 479 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 479 v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
|...+.+....-+++....|.|.-..+++...+
T Consensus 303 iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 303 IFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred eEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 666655554444666667777766666665554
No 341
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.42 E-value=0.99 Score=45.94 Aligned_cols=106 Identities=17% Similarity=0.159 Sum_probs=62.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE--EEecc------CCccEEEEEEcCC---CCEEEEEeC------
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEE------HTQWITDVRFSPS---LSRLATSSA------ 325 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~--~~l~~------h~~~V~~l~~sp~---~~~l~t~s~------ 325 (545)
-...+.++|.|+|+++++-...+.|++++..+++.. ..+.. ....+..|+|+|+ +.+|+.+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345779999999998777544457888876555432 22321 2456789999995 555554432
Q ss_pred -------CCeEEEEECCCCC-------eeeeEecc-CcccEEEEEEeCCCCcEEEEEc
Q 009059 326 -------DRTVRVWDTENPD-------YSLRTFTG-HSTTVMSLDFHPSKEDLLCSCD 368 (545)
Q Consensus 326 -------dg~I~vwd~~~~~-------~~~~~~~~-h~~~V~~l~~~p~~~~ll~s~s 368 (545)
...|.-|++.... ..+..+.. .......|+|.|+|..++..|+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 2345555553321 11111221 1234789999999865554443
No 342
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.42 E-value=0.22 Score=47.98 Aligned_cols=202 Identities=10% Similarity=0.037 Sum_probs=98.3
Q ss_pred eEEEEECCCCCeeeeEeccC-cccEEEEEEeCCCCcEEEEEcC----CC-------cEEEEECCCCceeeEEeccCC--e
Q 009059 328 TVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDN----NS-------EIRYWSINNGSCAGVFKCQSG--A 393 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~ll~s~s~----dg-------~I~lwd~~~~~~~~~~~~~~~--v 393 (545)
.+.+||..+.+......... ...-.+++ ..+ +.+++.|+. ++ .+..||+.+.+....-..... -
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIV-TQQ-NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEE-CSS-SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred ceEEECCCCCceecccCCccCCccceEEE-EEC-CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 47889988776533222211 11122222 233 456666662 12 277889887665432222111 1
Q ss_pred eEEEEeCCCCEEEEEECC-------CeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe--C-----CcEEE
Q 009059 394 TQMRFQPRLGRILAAAIE-------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS--D-----ELVRV 457 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~d-------g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s--d-----g~I~v 457 (545)
..++.. ++..++.|+.+ ..+.+||..+.+-... +....... +++. .++++++.|+ + ..+.+
T Consensus 103 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~ 179 (318)
T 2woz_A 103 FGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLGGKTDDKKCTNRVFI 179 (318)
T ss_dssp CEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ETTEEEEECCEESSSCBCCCEEE
T ss_pred cceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-ECCEEEEEcCCCCCCCccceEEE
Confidence 222222 44566666653 3588999988754332 11111111 1222 3566666665 2 25899
Q ss_pred EEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-----CeEEEEeCCCCeEEEeccCCC--CeeEEEEeCCCC
Q 009059 458 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDK--LVSSLAASTVNG 530 (545)
Q Consensus 458 wd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~~--~V~~l~~spd~~ 530 (545)
||+.+.. ...+..+..... -.+++. -++..++.|+.+ ..+.+||+.+++...+..... .-.++. .-+++
T Consensus 180 yd~~~~~-W~~~~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~ 255 (318)
T 2woz_A 180 YNPKKGD-WKDLAPMKTPRS-MFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGS 255 (318)
T ss_dssp EETTTTE-EEEECCCSSCCB-SCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTE
T ss_pred EcCCCCE-EEECCCCCCCcc-cceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCE
Confidence 9987652 111111111111 122222 255666666653 268899998887664432211 111222 23567
Q ss_pred EEEEEeCC
Q 009059 531 MVASASHD 538 (545)
Q Consensus 531 ~las~s~D 538 (545)
+++.|+.+
T Consensus 256 i~v~GG~~ 263 (318)
T 2woz_A 256 LYAIGGFA 263 (318)
T ss_dssp EEEECCBC
T ss_pred EEEECCee
Confidence 77777754
No 343
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.36 E-value=0.18 Score=45.60 Aligned_cols=175 Identities=10% Similarity=-0.070 Sum_probs=95.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCCe-----eeeEeccC--cccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec
Q 009059 317 LSRLATSSADRTVRVWDTENPDY-----SLRTFTGH--STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 389 (545)
Q Consensus 317 ~~~l~t~s~dg~I~vwd~~~~~~-----~~~~~~~h--~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~ 389 (545)
..+|+....| +|+.=....... ....+ +. =..+..++|+|++. |.++ .+|.++-.+..+.....-+..
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCccccccc
Confidence 4567777777 655544443321 11111 22 13677999999765 5544 578877777655322211111
Q ss_pred cC--------CeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE-------EEEecCCCCCEEEEEEcCCCCEEEEEeCCc
Q 009059 390 QS--------GATQMRFQPRLGRILAAAIENYISILDVETQVC-------RLKLQGHKNQVHSVCWNTSGEYLASVSDEL 454 (545)
Q Consensus 390 ~~--------~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~-------~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~ 454 (545)
.. .-..+.|.+++..+++ .||.|+-++..+... ...-..-=..+..|.+.|+|.+.++. |+.
T Consensus 79 ~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ 155 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQ 155 (236)
T ss_dssp CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTE
T ss_pred ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCc
Confidence 11 1378899999665555 669998888643110 11111111467999999999999988 887
Q ss_pred EEEEEcCCCCC--c-ceEEEEe-eCCCceEEEEEcCCCCEEEEEEcCCeEE
Q 009059 455 VRVWSIGSGSK--G-ECIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLE 501 (545)
Q Consensus 455 I~vwd~~~~~~--~-~~i~~~~-~~~~~v~~~~~sp~~~~l~~~~~dg~I~ 501 (545)
++-+...+... . .....+- ..-....-+.|.+++...++. ++.++
T Consensus 156 lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 156 FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred EEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 54433221110 0 0111111 222334556688888754444 66443
No 344
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.14 Score=49.81 Aligned_cols=186 Identities=8% Similarity=0.007 Sum_probs=101.1
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEeccC-CccEEEEEEc--CCCCEEEEE--eCCCeEEEEECCCCCeeeeEecc----
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFS--PSLSRLATS--SADRTVRVWDTENPDYSLRTFTG---- 346 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~h-~~~V~~l~~s--p~~~~l~t~--s~dg~I~vwd~~~~~~~~~~~~~---- 346 (545)
.+++.++.||.|.-.|.++|+.+..++.. ..++....-. +.+..++.+ ..||.|..++..++.... .+.-
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~-~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL-PLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE-EEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe-eeccccce
Confidence 36888899999999999999999888654 1222221100 112234433 579999999988764322 1110
Q ss_pred CcccEEE---EEE-eC---CCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCee--------EEEEe-----CCCCEEE
Q 009059 347 HSTTVMS---LDF-HP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT--------QMRFQ-----PRLGRIL 406 (545)
Q Consensus 347 h~~~V~~---l~~-~p---~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~--------~l~~s-----p~~~~l~ 406 (545)
...++.. ..+ .+ .....+++|+.+|.+...|+.+|+.+..+....... |.... ..++.++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1112221 000 00 013466789999999999999999999887543211 11111 1235677
Q ss_pred EEECCCeEEEEECCCCEEEEEe-----cCCCCC--E-EEEEEcCCCCEEEEEeCCcEEEEEcCCCC
Q 009059 407 AAAIENYISILDVETQVCRLKL-----QGHKNQ--V-HSVCWNTSGEYLASVSDELVRVWSIGSGS 464 (545)
Q Consensus 407 ~~~~dg~I~i~d~~~~~~~~~~-----~~h~~~--I-~~l~~sp~g~~l~s~sdg~I~vwd~~~~~ 464 (545)
.+..+..+.+.+ ++++ +..+ ..+... + ..-..+.++.++++..||.|.-+|..++.
T Consensus 170 ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~ 233 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRI 233 (339)
T ss_dssp EEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCC
T ss_pred EecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCCc
Confidence 777777777766 4443 2111 111000 0 00000123566554447888887777663
No 345
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.95 E-value=0.36 Score=47.20 Aligned_cols=185 Identities=10% Similarity=-0.023 Sum_probs=89.4
Q ss_pred CCCEEEEEeC-C---------CcEEEEEcCCCeEEEE--ec-cCCccEEEEEEcCCCCEEEEEeCC--------------
Q 009059 274 DGKLLATGGH-D---------KKAVLWCTESFTVKST--LE-EHTQWITDVRFSPSLSRLATSSAD-------------- 326 (545)
Q Consensus 274 dg~~latg~~-d---------g~I~lwd~~~~~~~~~--l~-~h~~~V~~l~~sp~~~~l~t~s~d-------------- 326 (545)
++++++.|+. + ..+.+||..+.+-... +. .......++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ 142 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEA 142 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhc
Confidence 5677777775 2 4688899887543321 11 1111222222 467788888765
Q ss_pred -------------------------CeEEEEECCCCCeeeeEeccCcccE-EEEEEeCCCCcEEEEEcC------CCcEE
Q 009059 327 -------------------------RTVRVWDTENPDYSLRTFTGHSTTV-MSLDFHPSKEDLLCSCDN------NSEIR 374 (545)
Q Consensus 327 -------------------------g~I~vwd~~~~~~~~~~~~~h~~~V-~~l~~~p~~~~ll~s~s~------dg~I~ 374 (545)
..+.+||..+.......-....... .+++.. ++.+++.|+. ...+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~ 220 (357)
T 2uvk_A 143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVF 220 (357)
T ss_dssp TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEE
T ss_pred CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceE
Confidence 4788999987654322111111111 223333 2456656653 34577
Q ss_pred EEEC--CCCceeeEEec--cCC-eeEEEEeCCCCEEEEEECC----------------------CeEEEEECCCC--EEE
Q 009059 375 YWSI--NNGSCAGVFKC--QSG-ATQMRFQPRLGRILAAAIE----------------------NYISILDVETQ--VCR 425 (545)
Q Consensus 375 lwd~--~~~~~~~~~~~--~~~-v~~l~~sp~~~~l~~~~~d----------------------g~I~i~d~~~~--~~~ 425 (545)
+||+ .+.+....-.. ... ....+...++..++.|+.+ ..+.+||+.+. ..+
T Consensus 221 ~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~ 300 (357)
T 2uvk_A 221 ELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS 300 (357)
T ss_dssp EEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE
T ss_pred EEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC
Confidence 7887 44333222111 111 1112223344555666532 25789998865 334
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEe-CC------cEEEEEcCCCC
Q 009059 426 LKLQGHKNQVHSVCWNTSGEYLASVS-DE------LVRVWSIGSGS 464 (545)
Q Consensus 426 ~~~~~h~~~I~~l~~sp~g~~l~s~s-dg------~I~vwd~~~~~ 464 (545)
..+......-.++. -++++++.|+ ++ .|.++++++++
T Consensus 301 ~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 301 GELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp EECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred CCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 33433222222332 3566666666 32 35556777653
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.93 E-value=0.22 Score=54.01 Aligned_cols=222 Identities=5% Similarity=0.000 Sum_probs=113.4
Q ss_pred CCCCEEEEEeCC----CeEEEEECCCCCeeeeEec------cCcccEEEEEEeC-CCCcEEEEEcCC------CcEEEEE
Q 009059 315 PSLSRLATSSAD----RTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHP-SKEDLLCSCDNN------SEIRYWS 377 (545)
Q Consensus 315 p~~~~l~t~s~d----g~I~vwd~~~~~~~~~~~~------~h~~~V~~l~~~p-~~~~ll~s~s~d------g~I~lwd 377 (545)
.++.+++.|+.+ ..+.+||..+.......+. .....-.+++..+ + +.+++.|+.+ ..+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~-~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN-NQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT-TEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC-CEEEEEcCCCCCCCccccEEEEe
Confidence 456677777653 3588888887654322201 1111112333333 4 3566666543 3588899
Q ss_pred CCCCceeeEEeccC--CeeEEEEeCCCCEEEEEECCC--eEEEEECCCCEEEEEe-----cCCCCCEEEEEEcCC-CCEE
Q 009059 378 INNGSCAGVFKCQS--GATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKL-----QGHKNQVHSVCWNTS-GEYL 447 (545)
Q Consensus 378 ~~~~~~~~~~~~~~--~v~~l~~sp~~~~l~~~~~dg--~I~i~d~~~~~~~~~~-----~~h~~~I~~l~~sp~-g~~l 447 (545)
+.+.+....-.... .-.+++...++..++.|+.++ .+.+||..+..-...- ........++.+..+ ++++
T Consensus 475 ~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 98765443222111 122333334667777777644 7999999987543321 111222233555554 6666
Q ss_pred EEEe---C-----CcEEEEEcCCCCC-----cceEEEEeeCCCceEEEEEcCCCCEEEEEEc--------CCeEEEEeCC
Q 009059 448 ASVS---D-----ELVRVWSIGSGSK-----GECIHELSCTGNKFHSCVFHPTFPSLLVIGC--------YETLELWNMT 506 (545)
Q Consensus 448 ~s~s---d-----g~I~vwd~~~~~~-----~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~--------dg~I~iwd~~ 506 (545)
+.|+ + +.+.+||+.+..- ...+.........-.+++...++..++.||. ...|.+||+.
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 6665 2 2588999987641 1222221111111223333343666677764 2469999999
Q ss_pred CCeEEEeccCC--------CCe-eEEEEeCCCCEEEEEeC
Q 009059 507 ENKTLTLSAHD--------KLV-SSLAASTVNGMVASASH 537 (545)
Q Consensus 507 ~~~~~~~~~h~--------~~V-~~l~~spd~~~las~s~ 537 (545)
+++........ ..+ .++....++++++.||.
T Consensus 635 t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 635 SETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp TTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred CCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence 88766322100 000 23334455677777764
No 347
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=95.16 E-value=2.8 Score=41.46 Aligned_cols=255 Identities=7% Similarity=-0.033 Sum_probs=120.0
Q ss_pred CCeEEEEEcC--CCCEEEEEeCCC----cEEEEEcCCCeEEEEec------c--------CCccEEEEEEcC-C-CCEEE
Q 009059 264 SKVESCHFSP--DGKLLATGGHDK----KAVLWCTESFTVKSTLE------E--------HTQWITDVRFSP-S-LSRLA 321 (545)
Q Consensus 264 ~~V~~l~~sp--dg~~latg~~dg----~I~lwd~~~~~~~~~l~------~--------h~~~V~~l~~sp-~-~~~l~ 321 (545)
..|.+|++.| ++.++| ++..+ .|...+ +.++.-..+. . +...|.+|++.| + ...|+
T Consensus 55 ~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp SEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 4699999998 454544 44444 343332 2232222211 1 113588899987 2 45566
Q ss_pred EEeCCCeEEEEECCCCCeeeeEecc-------------------CcccEEEEEEeCCC-CcEEEEEcCCCcEEEEECCCC
Q 009059 322 TSSADRTVRVWDTENPDYSLRTFTG-------------------HSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNG 381 (545)
Q Consensus 322 t~s~dg~I~vwd~~~~~~~~~~~~~-------------------h~~~V~~l~~~p~~-~~ll~s~s~dg~I~lwd~~~~ 381 (545)
.+...+.|... .++......+.. ....+.+|.+.|.. ..++ .+..++.|...+ ..+
T Consensus 133 ~g~~~ggl~~S--~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~-vg~~~ggl~~s~-DgG 208 (394)
T 3b7f_A 133 AGTSPQGLFRS--TDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY-IGMSSGGVFEST-DAG 208 (394)
T ss_dssp EEEETTEEEEE--SSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE-EEEETBEEEEES-STT
T ss_pred EEecCCcEEEE--cCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE-EEECCCCEEEEC-CCC
Confidence 66555544433 322221222211 12357899998843 3444 333344444332 222
Q ss_pred ceeeEEec--------------cCCeeEEEEeCC-CCEEEEEECCCeEEEEECCCCEEEEEecC--CC---CCEEEEEEc
Q 009059 382 SCAGVFKC--------------QSGATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQG--HK---NQVHSVCWN 441 (545)
Q Consensus 382 ~~~~~~~~--------------~~~v~~l~~sp~-~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h~---~~I~~l~~s 441 (545)
+.-..+.. ...+.++.+.|. .+.++++.. +.|+..+-... .-..+.. .. ..+.++.++
T Consensus 209 ~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-~gl~~s~D~G~-tW~~~~~~l~~~~~~~~~~i~~~ 286 (394)
T 3b7f_A 209 TDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-CGIYRMDRREG-VWKRIGDAMPREVGDIGFPIVVH 286 (394)
T ss_dssp SSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-TEEEEEETTTT-EEECGGGGSCTTTCSCEEEEEEC
T ss_pred CCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-CeEEEeCCCCC-cceECCCCCCCCCccceEEEEEC
Confidence 22111110 123778889885 356666654 44555543322 2222211 11 346778887
Q ss_pred CC--CCEEEEEe-----------CCcEEEEEcCC-CCCcceEEE-EeeCCC----ceEEEEEcCCC-CEEEEEEcCCeEE
Q 009059 442 TS--GEYLASVS-----------DELVRVWSIGS-GSKGECIHE-LSCTGN----KFHSCVFHPTF-PSLLVIGCYETLE 501 (545)
Q Consensus 442 p~--g~~l~s~s-----------dg~I~vwd~~~-~~~~~~i~~-~~~~~~----~v~~~~~sp~~-~~l~~~~~dg~I~ 501 (545)
|. +.+++... ++...||.... +.....+.. +..... ....++++|.. ..|++++..+.|+
T Consensus 287 p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 287 QRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIW 366 (394)
T ss_dssp SSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred CCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence 63 34444431 22345665544 222222211 110000 11357787753 4577776666665
Q ss_pred EEeCCCCeEEEeccCCCCeeEEEEe
Q 009059 502 LWNMTENKTLTLSAHDKLVSSLAAS 526 (545)
Q Consensus 502 iwd~~~~~~~~~~~h~~~V~~l~~s 526 (545)
.-+-.......+..+-..+.+|.|.
T Consensus 367 ~S~D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 367 ASADEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp EESSTTSBCEEEECSCSCEEEEEEE
T ss_pred EECCCCCCceEcccCCCCeeEEEEe
Confidence 5433222233444444567777764
No 348
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.35 E-value=1.3 Score=41.77 Aligned_cols=240 Identities=13% Similarity=0.036 Sum_probs=121.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEe
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 344 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~ 344 (545)
.|..++....- .++. . ||.|+.|-....-.+-.-......|..|+...... ++. . ||.|..|-...... +-.-
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gq-lg~P 97 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQ-TTVP 97 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTST-TCCC
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCC-CCCC
Confidence 45566655332 2333 4 88888886543211111111233577777654433 333 4 89999998764332 1111
Q ss_pred ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee-eEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCE
Q 009059 345 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 423 (545)
Q Consensus 345 ~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~ 423 (545)
..-...|..++.... ..+ .-. +|.|+.|-......+ ........+..++.... ..++.. +|.|+.|-....-
T Consensus 98 ~~~~~~v~~ia~G~~--hs~-al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 98 AEARSGVDAIAAGAW--ASY-ALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFG 170 (282)
T ss_dssp GGGSSSEEEEEEETT--EEE-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTS
T ss_pred cccCCCeEEEECcCC--EEE-EEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCC
Confidence 111346777877643 333 334 899999976542221 11122344666655443 333344 7999998765321
Q ss_pred EEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEE
Q 009059 424 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 503 (545)
Q Consensus 424 ~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iw 503 (545)
.+-.-..-...|..|+..... .++. .|+.|+.|-........ .-......|..++..... .++.. ++.|+.|
T Consensus 171 qlg~p~~~~~~v~~i~~G~~h-s~al-~~G~v~~wG~n~~gqlg---~p~~~~~~v~~i~~G~~h--~~al~-~g~v~~w 242 (282)
T 3qhy_B 171 QTTVPAEAQSGVDDVAGGIFH-SLAL-KDGKVIAWGDNRYKQTT---VPTEALSGVSAIASGEWY--SLALK-NGKVIAW 242 (282)
T ss_dssp TTSCCGGGGSSEEEEEECSSE-EEEE-ETTEEEEEECCTTSTTC---CCGGGGSSCCEEEECSSC--EEEEE-TTEEEEE
T ss_pred CCCCceecCCCeEEEEecCCE-EEEE-ECCeEEEEECCCCCCCC---CCcccCCCceEEEcCCCE--EEEEE-CCEEEEe
Confidence 110000113467777765433 3444 68899999765421110 000112345555544333 34444 9999999
Q ss_pred eCCCCeEEEeccCCCCeeEEEEeCCC
Q 009059 504 NMTENKTLTLSAHDKLVSSLAASTVN 529 (545)
Q Consensus 504 d~~~~~~~~~~~h~~~V~~l~~spd~ 529 (545)
-......+.+ ...|..|+.....
T Consensus 243 G~n~~gq~~v---~~~v~~iaaG~~h 265 (282)
T 3qhy_B 243 GSSRTAPSSV---QSGVSSIEAGPNA 265 (282)
T ss_dssp STTCCCCGGG---SSCEEEEEECSSC
T ss_pred cCCCCccccC---CCCcEEEEECcCe
Confidence 7665433322 3457777665444
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.00 E-value=6 Score=40.19 Aligned_cols=232 Identities=10% Similarity=0.011 Sum_probs=113.3
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCe---EEEEec---------cCCccEEEEEEcCC----CCEEEEEeC-
Q 009059 264 SKVESCHFSPDGK-LLATGGHDKKAVLWCTESFT---VKSTLE---------EHTQWITDVRFSPS----LSRLATSSA- 325 (545)
Q Consensus 264 ~~V~~l~~spdg~-~latg~~dg~I~lwd~~~~~---~~~~l~---------~h~~~V~~l~~sp~----~~~l~t~s~- 325 (545)
..-+.|+|.|||. .|+++...|.|++++..... .+..+. ........|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3467899999996 44455678999999754321 222221 11456889999996 333333221
Q ss_pred -C----------CeEEEEECCCC---------CeeeeEec--cCcccEEEEEEeCCCCcEEEEEcCC-------------
Q 009059 326 -D----------RTVRVWDTENP---------DYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNN------------- 370 (545)
Q Consensus 326 -d----------g~I~vwd~~~~---------~~~~~~~~--~h~~~V~~l~~~p~~~~ll~s~s~d------------- 370 (545)
+ ..|.-|.+... ...+..+. ........|.|.||+..++.+|+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 13444655421 11122221 1123467899999986555444321
Q ss_pred ---CcEEEEECCCCc-------------------eeeEEe-ccCCeeEEEEeCCC-----C-EEEEEECCC----eEEEE
Q 009059 371 ---SEIRYWSINNGS-------------------CAGVFK-CQSGATQMRFQPRL-----G-RILAAAIEN----YISIL 417 (545)
Q Consensus 371 ---g~I~lwd~~~~~-------------------~~~~~~-~~~~v~~l~~sp~~-----~-~l~~~~~dg----~I~i~ 417 (545)
|.|.-.|..... ....+. .......++|.|.. . +++++...| .-.|.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~ 253 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARIL 253 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCCCCCeEe
Confidence 234334444310 001111 12346678999973 2 344333212 12233
Q ss_pred ECCCC------EEEEEecCCC-CCEEEEEEcCC-------CCEEEEEeCCcEEEEEcCCCCCcceEEEE-e--------e
Q 009059 418 DVETQ------VCRLKLQGHK-NQVHSVCWNTS-------GEYLASVSDELVRVWSIGSGSKGECIHEL-S--------C 474 (545)
Q Consensus 418 d~~~~------~~~~~~~~h~-~~I~~l~~sp~-------g~~l~s~sdg~I~vwd~~~~~~~~~i~~~-~--------~ 474 (545)
.+..+ .++..+..|. ..+..+.|... |.+|+..-.+.|....+...........+ . .
T Consensus 254 ~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 333 (463)
T 2wg3_C 254 QIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGY 333 (463)
T ss_dssp EEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSCSC
T ss_pred eeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCccccccc
Confidence 33222 2333443221 46778877532 34555444666665555433211111122 1 1
Q ss_pred CCCceEEEEEcCCCCEEEEEE
Q 009059 475 TGNKFHSCVFHPTFPSLLVIG 495 (545)
Q Consensus 475 ~~~~v~~~~~sp~~~~l~~~~ 495 (545)
....+..+.+.|+|..+++..
T Consensus 334 ~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 334 FSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp CCSEEEEEEECTTCCEEEEEE
T ss_pred ccCcceEEEECCCCCEEEEec
Confidence 235689999999998666655
No 350
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=93.91 E-value=6.5 Score=42.33 Aligned_cols=235 Identities=9% Similarity=0.013 Sum_probs=121.0
Q ss_pred EcCCCCEEEEEeC-----CCcEEEEEcCCCeEEE-Eec-cCCc------cEEEEEEcCCCCEEEEEe----------CCC
Q 009059 271 FSPDGKLLATGGH-----DKKAVLWCTESFTVKS-TLE-EHTQ------WITDVRFSPSLSRLATSS----------ADR 327 (545)
Q Consensus 271 ~spdg~~latg~~-----dg~I~lwd~~~~~~~~-~l~-~h~~------~V~~l~~sp~~~~l~t~s----------~dg 327 (545)
++||+++++.+-. ...|+++|+++++.+. .+. .-+. ....++|..+...+++.. .-.
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~ 216 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPN 216 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBC
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCC
Confidence 7899998776522 2479999999988773 122 0000 113347764443444321 125
Q ss_pred eEEEEECCCCCe-eeeEeccCcccE-EEEEEeCCCCc----EEEEEc---CCCcEEEEECCC--CceeeEEeccCCeeEE
Q 009059 328 TVRVWDTENPDY-SLRTFTGHSTTV-MSLDFHPSKED----LLCSCD---NNSEIRYWSINN--GSCAGVFKCQSGATQM 396 (545)
Q Consensus 328 ~I~vwd~~~~~~-~~~~~~~h~~~V-~~l~~~p~~~~----ll~s~s---~dg~I~lwd~~~--~~~~~~~~~~~~v~~l 396 (545)
.|+.|.+.+... ....+.+....+ .....++++.. ++++.+ ....+++.+... ++.. .+..+.... +
T Consensus 217 ~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~-~ 294 (711)
T 4hvt_A 217 SLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KINMPSDAT-L 294 (711)
T ss_dssp EEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECCSCTTCE-E
T ss_pred EEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-EeecCCcce-E
Confidence 689998876532 223444333333 33445566653 444433 224567777653 3322 222222222 2
Q ss_pred EEeCCCCEEEEE-----------ECCCeEEEEECCCCE-------EEEE-ec-CCCCCEEEEEEcCCCCEEEEEe-CC--
Q 009059 397 RFQPRLGRILAA-----------AIENYISILDVETQV-------CRLK-LQ-GHKNQVHSVCWNTSGEYLASVS-DE-- 453 (545)
Q Consensus 397 ~~sp~~~~l~~~-----------~~dg~I~i~d~~~~~-------~~~~-~~-~h~~~I~~l~~sp~g~~l~s~s-dg-- 453 (545)
....+ +.+++. ...+.|.+.|+.+.. .... +. .....+..+.|..+ .++++.. ++
T Consensus 295 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~ 372 (711)
T 4hvt_A 295 QGSFK-EYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVA 372 (711)
T ss_dssp EEEET-TEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEE
T ss_pred eeeEC-CEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEE
Confidence 23334 344332 235679999987531 1122 22 23346778888865 4555555 66
Q ss_pred cEEEEEcCCCC-CcceEEEEeeCCCceEEEEEcCCCCEEEEE-EcC---CeEEEEeCCCCeEE
Q 009059 454 LVRVWSIGSGS-KGECIHELSCTGNKFHSCVFHPTFPSLLVI-GCY---ETLELWNMTENKTL 511 (545)
Q Consensus 454 ~I~vwd~~~~~-~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~-~~d---g~I~iwd~~~~~~~ 511 (545)
.|.++++.++. ....+..+.. ...+....+.+++..++.. ++. ..++.+|+. ++..
T Consensus 373 ~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~ 433 (711)
T 4hvt_A 373 KVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELK 433 (711)
T ss_dssp EEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEE
T ss_pred EEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEE
Confidence 57788776542 1111111211 2456666666776554444 332 388888887 5443
No 351
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.84 E-value=0.77 Score=49.62 Aligned_cols=156 Identities=12% Similarity=0.130 Sum_probs=84.6
Q ss_pred EEEcCCCCEEEEEeCC------CcEEEEEcCCCeEEE--EeccCCccEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCC
Q 009059 269 CHFSPDGKLLATGGHD------KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPD 338 (545)
Q Consensus 269 l~~spdg~~latg~~d------g~I~lwd~~~~~~~~--~l~~h~~~V~~l~~sp~~~~l~t~s~dg--~I~vwd~~~~~ 338 (545)
+.+..++++++.||.+ ..+.+||..+.+-.. .+...... .+++...++++++.|+.++ .+.+||..+..
T Consensus 446 ~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~ 524 (695)
T 2zwa_A 446 TTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEI 524 (695)
T ss_dssp EEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTE
T ss_pred EEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCc
Confidence 3333277788888754 357888987743322 22211111 1223323778888887654 68999998765
Q ss_pred eeeeEe----ccCcccEEEEEEeCCCCcEEEEEcC--C-----CcEEEEECCCCc------eeeEEec--cCC-eeEEEE
Q 009059 339 YSLRTF----TGHSTTVMSLDFHPSKEDLLCSCDN--N-----SEIRYWSINNGS------CAGVFKC--QSG-ATQMRF 398 (545)
Q Consensus 339 ~~~~~~----~~h~~~V~~l~~~p~~~~ll~s~s~--d-----g~I~lwd~~~~~------~~~~~~~--~~~-v~~l~~ 398 (545)
...... ........++.+..+...+++.|+. + ..+.+||+.+.. ....... ... -..+..
T Consensus 525 W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~ 604 (695)
T 2zwa_A 525 FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY 604 (695)
T ss_dssp EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEE
T ss_pred eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEE
Confidence 422221 1111222334555553456667764 2 458899998876 2222111 111 123333
Q ss_pred eCCCCEEEEEEC--------CCeEEEEECCCCEEE
Q 009059 399 QPRLGRILAAAI--------ENYISILDVETQVCR 425 (545)
Q Consensus 399 sp~~~~l~~~~~--------dg~I~i~d~~~~~~~ 425 (545)
..++..++.|+. ...|.+||+.+.+-.
T Consensus 605 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 605 ITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred eCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 333466666664 346999999987544
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.72 E-value=1.9 Score=40.63 Aligned_cols=217 Identities=11% Similarity=0.010 Sum_probs=111.9
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 385 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~ 385 (545)
..|..|+.... ..+.-. ||.|..|-...... +-.-......|..++.... ..++. . ||.|+.|-....-.+.
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gq-lg~p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQ-LTMPAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSST-TSCCGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCC-CCCCccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCC
Confidence 35777776543 333335 89999998664332 1111112335777766533 34434 4 8999999865422111
Q ss_pred -EEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCC
Q 009059 386 -VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS 464 (545)
Q Consensus 386 -~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~ 464 (545)
.......+..++... ...++.. +|.|+.|-....-.+-........|..++......+ +.. |+.|+.|-.....
T Consensus 96 ~P~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~-~l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 96 VPAEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTAL-AVK-NGGVIAWGDNYFG 170 (282)
T ss_dssp CCGGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEE-EEE-TTEEEEEECCTTS
T ss_pred CCcccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEE-EEE-CCEEEEecCCCCC
Confidence 111224566666655 3455556 999999976532110000112345777765443322 223 7888888765421
Q ss_pred CcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 465 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 465 ~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
... ........|..++..... .++. .++.|+.|-......+ .-......|..|+..... .++.. ||.|..
T Consensus 171 qlg---~p~~~~~~v~~i~~G~~h--s~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al~--~g~v~~ 241 (282)
T 3qhy_B 171 QTT---VPAEAQSGVDDVAGGIFH--SLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLALK--NGKVIA 241 (282)
T ss_dssp TTS---CCGGGGSSEEEEEECSSE--EEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEEE--TTEEEE
T ss_pred CCC---CceecCCCeEEEEecCCE--EEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEEE--CCEEEE
Confidence 111 000112345555544333 3333 6889999976543222 111122457777755433 33333 888888
Q ss_pred c
Q 009059 544 W 544 (545)
Q Consensus 544 W 544 (545)
|
T Consensus 242 w 242 (282)
T 3qhy_B 242 W 242 (282)
T ss_dssp E
T ss_pred e
Confidence 7
No 353
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.67 E-value=0.51 Score=48.58 Aligned_cols=126 Identities=13% Similarity=0.147 Sum_probs=84.1
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC------ce-------eeEEeccCCeeEEEEeCCCCEEEEEECCCeEE
Q 009059 349 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG------SC-------AGVFKCQSGATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 349 ~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~------~~-------~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
.....+.++|+|+++++++-.+.++.++|++.- +. ....+..-+....+|.++|.-+.+..-|..|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence 345577889999999999989999999998741 11 22334456688999999974444444699999
Q ss_pred EEECCCC----------EEEEEecCCCCCEEEEEE------cCCCCEEEEEe----CCc----------EEEEEcCCCCC
Q 009059 416 ILDVETQ----------VCRLKLQGHKNQVHSVCW------NTSGEYLASVS----DEL----------VRVWSIGSGSK 465 (545)
Q Consensus 416 i~d~~~~----------~~~~~~~~h~~~I~~l~~------sp~g~~l~s~s----dg~----------I~vwd~~~~~~ 465 (545)
.|++... ..+..+.-|-.+ -.+.- .++|++|++.. |.. -.++|+.. .+
T Consensus 403 kWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG-dk 480 (638)
T 3sbq_A 403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG-DE 480 (638)
T ss_dssp EEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS-SS
T ss_pred EEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC-Cc
Confidence 9998753 345555555433 23332 57899999876 432 36788854 34
Q ss_pred cceEEEEeeCC
Q 009059 466 GECIHELSCTG 476 (545)
Q Consensus 466 ~~~i~~~~~~~ 476 (545)
...++......
T Consensus 481 M~lv~D~P~~~ 491 (638)
T 3sbq_A 481 MKLVHDGPTFA 491 (638)
T ss_dssp CEEEEEEEESS
T ss_pred eEEEecCCCCC
Confidence 45666554433
No 354
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=93.02 E-value=7.4 Score=38.25 Aligned_cols=164 Identities=10% Similarity=0.094 Sum_probs=97.2
Q ss_pred cEEEEECCCC--ceeeEEeccC-------CeeEEEEe---CC----CCEEEEEEC-CCeEEEEECCCCEEEEEec----C
Q 009059 372 EIRYWSINNG--SCAGVFKCQS-------GATQMRFQ---PR----LGRILAAAI-ENYISILDVETQVCRLKLQ----G 430 (545)
Q Consensus 372 ~I~lwd~~~~--~~~~~~~~~~-------~v~~l~~s---p~----~~~l~~~~~-dg~I~i~d~~~~~~~~~~~----~ 430 (545)
.|.+||+.+. +.++.+..+. ....+.+. +. +.+.+.+.. .+.|.|||+.+++..+.+. .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4667888887 7777776532 36777777 22 344455543 6789999999987665442 1
Q ss_pred C--------------CCCEEEEEEcCC----CCEEEEEe-CCcEEEEEcC-----CCCCcceEEEEeeCC--CceEEEEE
Q 009059 431 H--------------KNQVHSVCWNTS----GEYLASVS-DELVRVWSIG-----SGSKGECIHELSCTG--NKFHSCVF 484 (545)
Q Consensus 431 h--------------~~~I~~l~~sp~----g~~l~s~s-dg~I~vwd~~-----~~~~~~~i~~~~~~~--~~v~~~~~ 484 (545)
. ...|..|+++|+ ++.|.... .+ -++|.+. .......+..+-... ..-..+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 1 247888999998 77777776 33 2344332 222112233222222 33445667
Q ss_pred c-CCCCEEEEEEcCCeEEEEeCCC-C----eEE--EeccCCCCeeEEEEeCCCCEEEEEe
Q 009059 485 H-PTFPSLLVIGCYETLELWNMTE-N----KTL--TLSAHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 485 s-p~~~~l~~~~~dg~I~iwd~~~-~----~~~--~~~~h~~~V~~l~~spd~~~las~s 536 (545)
. .+|..+++--....|..|+..+ . ... .....-..+..+.+..++.+.+...
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 5 5666555555667999999876 1 111 2222223577888877877665553
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.35 E-value=11 Score=38.35 Aligned_cols=229 Identities=13% Similarity=0.074 Sum_probs=115.4
Q ss_pred ccEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCC--eeeeEec---------cCcccEEEEEEeCC---CCcEEEEEcC-
Q 009059 306 QWITDVRFSPSLS-RLATSSADRTVRVWDTENPD--YSLRTFT---------GHSTTVMSLDFHPS---KEDLLCSCDN- 369 (545)
Q Consensus 306 ~~V~~l~~sp~~~-~l~t~s~dg~I~vwd~~~~~--~~~~~~~---------~h~~~V~~l~~~p~---~~~ll~s~s~- 369 (545)
...+.|+|.|++. .|+++...|.|++++..... ..+..+. ........|+|+|+ ...++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3467899999986 56666789999999754221 1112111 11456889999996 2334433321
Q ss_pred -C----------CcEEEEECCCC----------ceeeEEec---cCCeeEEEEeCCCCEEEEEECCC-------------
Q 009059 370 -N----------SEIRYWSINNG----------SCAGVFKC---QSGATQMRFQPRLGRILAAAIEN------------- 412 (545)
Q Consensus 370 -d----------g~I~lwd~~~~----------~~~~~~~~---~~~v~~l~~sp~~~~l~~~~~dg------------- 412 (545)
+ ..|.-|.+..+ +.+..+.. ......|.|.|++..+++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 13444555421 22222221 22367899999986666555432
Q ss_pred ----eEEEEECCCC---------------------EEEEEecCCCCCEEEEEEcCC-----CCE-EEEEeC-C----cEE
Q 009059 413 ----YISILDVETQ---------------------VCRLKLQGHKNQVHSVCWNTS-----GEY-LASVSD-E----LVR 456 (545)
Q Consensus 413 ----~I~i~d~~~~---------------------~~~~~~~~h~~~I~~l~~sp~-----g~~-l~s~sd-g----~I~ 456 (545)
.|.-+|.... ..+.. .+|. ....++|+|. |.+ +..+.. + .-.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~R-Np~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLH-DPGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCS-SCCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCC-CcceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 2333444331 01111 1232 2356889986 443 433321 2 233
Q ss_pred EEEcCCCCC---cceEEEEeeCC-CceEEEEEcCCCC------EEEEEEcCCeEEEEeCCCCe----EEEec-c------
Q 009059 457 VWSIGSGSK---GECIHELSCTG-NKFHSCVFHPTFP------SLLVIGCYETLELWNMTENK----TLTLS-A------ 515 (545)
Q Consensus 457 vwd~~~~~~---~~~i~~~~~~~-~~v~~~~~sp~~~------~l~~~~~dg~I~iwd~~~~~----~~~~~-~------ 515 (545)
|..+..+.. ...+..+..+. ..+..+.|-.... .++++...+.|....++... ...+. +
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 331 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR 331 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence 444433221 12333333221 4567777743321 25566666777666665432 11221 1
Q ss_pred --CCCCeeEEEEeCCCCEEEEEe
Q 009059 516 --HDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 516 --h~~~V~~l~~spd~~~las~s 536 (545)
....+..+.+.|||.++++..
T Consensus 332 ~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 332 GYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp SCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccCcceEEEECCCCCEEEEec
Confidence 235789999999999877765
No 356
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.04 E-value=9.9 Score=37.35 Aligned_cols=211 Identities=9% Similarity=-0.024 Sum_probs=98.5
Q ss_pred EEEEEeCCCcEEEEEcCC-CeEEEEe--ccCCccEEEEEEcC-CCCEEEEEeCCCe--EEEEECCCCCeeeeEec-----
Q 009059 277 LLATGGHDKKAVLWCTES-FTVKSTL--EEHTQWITDVRFSP-SLSRLATSSADRT--VRVWDTENPDYSLRTFT----- 345 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~-~~~~~~l--~~h~~~V~~l~~sp-~~~~l~t~s~dg~--I~vwd~~~~~~~~~~~~----- 345 (545)
.|..|+..| +.+++... ++.-..+ ......|.+|++.| +...|+.+...|. ..||...++......+.
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~ 102 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAF 102 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCC
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccC
Confidence 566677666 55554332 2211111 12235699999998 3334444444440 12332222221122211
Q ss_pred -c--------CcccEEEEEEeCC--CCcEEEEEcCCCcEEEEECCCCceeeEEe--------------------ccCCee
Q 009059 346 -G--------HSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--------------------CQSGAT 394 (545)
Q Consensus 346 -~--------h~~~V~~l~~~p~--~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--------------------~~~~v~ 394 (545)
. ....|.++++.|. ...++ .+...+.|...+- .++.-..+. ....+.
T Consensus 103 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~-~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~ 180 (394)
T 3b7f_A 103 NKAPEGETGRVVDHVFWLTPGHASEPGTWY-AGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMH 180 (394)
T ss_dssp CCCC----CCCCCEEEEEEECCTTSTTCEE-EEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEE
T ss_pred CCcccccccccccceeEEEeCCCCCCCEEE-EEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCcee
Confidence 0 1125788999873 34454 4444555554432 222211111 112367
Q ss_pred EEEEeCC-CCEEEEEECCCeEEEEECCCCEEEEEecC-----C--------CCCEEEEEEcCC-CCEEEEEeCCcEEEEE
Q 009059 395 QMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQG-----H--------KNQVHSVCWNTS-GEYLASVSDELVRVWS 459 (545)
Q Consensus 395 ~l~~sp~-~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-----h--------~~~I~~l~~sp~-g~~l~s~sdg~I~vwd 459 (545)
.+.+.|. .+.++++..++.|+..+-.. +.-..+.. + ...+.+|.++|. ...|.++.++.|...+
T Consensus 181 ~i~~d~~~~~~l~vg~~~ggl~~s~DgG-~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~ 259 (394)
T 3b7f_A 181 SILVDPRDPKHLYIGMSSGGVFESTDAG-TDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMD 259 (394)
T ss_dssp EEEECTTCTTCEEEEEETBEEEEESSTT-SSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEE
T ss_pred EEEECCCCCCEEEEEECCCCEEEECCCC-CCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeC
Confidence 8888873 45677776666555543222 11111110 0 124899999986 3566666655555444
Q ss_pred cCCCCCcceEEEEee--CC---CceEEEEEcCC-CCEEEEEE
Q 009059 460 IGSGSKGECIHELSC--TG---NKFHSCVFHPT-FPSLLVIG 495 (545)
Q Consensus 460 ~~~~~~~~~i~~~~~--~~---~~v~~~~~sp~-~~~l~~~~ 495 (545)
-. + .....+.. .. ..+..+.++|. ...|+++.
T Consensus 260 D~-G---~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 260 RR-E---GVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp TT-T---TEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred CC-C---CcceECCCCCCCCCccceEEEEECCCCCCEEEEEe
Confidence 21 2 11222111 11 23567788763 34455554
No 357
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=91.38 E-value=11 Score=36.34 Aligned_cols=262 Identities=8% Similarity=0.014 Sum_probs=135.8
Q ss_pred CEEEEEeCCCcEEEEEcCCC-------eEE--EEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEE---ECCCCC-----
Q 009059 276 KLLATGGHDKKAVLWCTESF-------TVK--STLEEHTQWITDVRFSPSLSRLATSSADRTVRVW---DTENPD----- 338 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~-------~~~--~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vw---d~~~~~----- 338 (545)
..+++.+.+|.|+--.+.+. +-+ ..++ ..+.+..+........|+.-+..|.+.-. ++....
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 46677788888886654321 111 1222 23445555554555667766777766544 443221
Q ss_pred eeeeEec--cCcccEEEEEEeCC--CCcEEEEEcCCCcEEEEECCCCc-------eeeEEeccCCeeEEEEeCCCCEEEE
Q 009059 339 YSLRTFT--GHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGS-------CAGVFKCQSGATQMRFQPRLGRILA 407 (545)
Q Consensus 339 ~~~~~~~--~h~~~V~~l~~~p~--~~~ll~s~s~dg~I~lwd~~~~~-------~~~~~~~~~~v~~l~~sp~~~~l~~ 407 (545)
.++..+. .....|.++...++ .+..++..+.+|.|+-..+.... ....++....+..+........++.
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEE
Confidence 1111111 12345666554432 23455588889999988765422 2222333445666666666688999
Q ss_pred EECCCeEEEEECC--C---------CEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCc----ceEEE
Q 009059 408 AAIENYISILDVE--T---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG----ECIHE 471 (545)
Q Consensus 408 ~~~dg~I~i~d~~--~---------~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~----~~i~~ 471 (545)
.+..|.+..+.+. . |.....+. ....|.++...+.+.+|+..+ .|.++.-.+...... .-+..
T Consensus 163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~ 241 (327)
T 3uc1_A 163 VSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT 241 (327)
T ss_dssp EETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred EECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence 9999999888776 2 22222232 345677777666666777766 888888876532110 11222
Q ss_pred --EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-------Eec--cCCCCeeEEEEeCC-CCEEEEEeCCC
Q 009059 472 --LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-------TLS--AHDKLVSSLAASTV-NGMVASASHDK 539 (545)
Q Consensus 472 --~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-------~~~--~h~~~V~~l~~spd-~~~las~s~Dg 539 (545)
+......+..+....+...++..+..|.+.-++...-... ... .....|.++...+. ...+.+.+.+|
T Consensus 242 ~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 242 VMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp SCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred EEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence 2221334555544445566888888887777765432211 111 22345666655443 34566666555
No 358
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=89.45 E-value=21 Score=38.36 Aligned_cols=224 Identities=9% Similarity=0.050 Sum_probs=113.9
Q ss_pred EEEEE-EcCCCCEEEEE-eC----CCeEEEEECCCCCeeeeEec-cCcc------cEEEEEEeCCCCcEEEEEc------
Q 009059 308 ITDVR-FSPSLSRLATS-SA----DRTVRVWDTENPDYSLRTFT-GHST------TVMSLDFHPSKEDLLCSCD------ 368 (545)
Q Consensus 308 V~~l~-~sp~~~~l~t~-s~----dg~I~vwd~~~~~~~~~~~~-~h~~------~V~~l~~~p~~~~ll~s~s------ 368 (545)
...+. ++|++++++.+ +. -..|+++|+.+++..-..+. .-+. ....++|..+ +.++++..
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCc
Confidence 33444 78888877664 22 24799999998765222222 0000 1134477633 45554321
Q ss_pred ----CCCcEEEEECCCCc--eeeEEeccCC--eeEEEEeCCCCE-----EEEEEC---CCeEEEEECCC--CEEEEEecC
Q 009059 369 ----NNSEIRYWSINNGS--CAGVFKCQSG--ATQMRFQPRLGR-----ILAAAI---ENYISILDVET--QVCRLKLQG 430 (545)
Q Consensus 369 ----~dg~I~lwd~~~~~--~~~~~~~~~~--v~~l~~sp~~~~-----l~~~~~---dg~I~i~d~~~--~~~~~~~~~ 430 (545)
....|+.|.+-+.. -...+..... ......+.++++ ++..+. ...+++.|... ++. ..+..
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 288 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINM 288 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCS
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeec
Confidence 12468888887643 2233332222 234445566553 333332 24677777653 332 22322
Q ss_pred CCCCEEEEEEcCCCCEEEEE-----------eCCcEEEEEcCCCCCc----ceEEE-E-eeCCCceEEEEEcCCCCEEEE
Q 009059 431 HKNQVHSVCWNTSGEYLASV-----------SDELVRVWSIGSGSKG----ECIHE-L-SCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 431 h~~~I~~l~~sp~g~~l~s~-----------sdg~I~vwd~~~~~~~----~~i~~-~-~~~~~~v~~~~~sp~~~~l~~ 493 (545)
..... +....++.+++.. ..+.|.+.++.++... ..... + ......+..+.|..+ ..+++
T Consensus 289 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSDAT--LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTTCE--EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCcce--EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 22221 2334455555532 1457899998764210 11122 2 223445777888876 45556
Q ss_pred EEcCC--eEEEEeCCCCe--EEE-ec-cCCCCeeEEEEeCCCC-EEEEEe
Q 009059 494 IGCYE--TLELWNMTENK--TLT-LS-AHDKLVSSLAASTVNG-MVASAS 536 (545)
Q Consensus 494 ~~~dg--~I~iwd~~~~~--~~~-~~-~h~~~V~~l~~spd~~-~las~s 536 (545)
...++ .|+++|+.++. ... +. ...+.+..+.+.+++. ++++.+
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~s 415 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIE 415 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEE
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEe
Confidence 66666 67888876664 212 21 1134566666667665 444444
No 359
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=88.26 E-value=18 Score=34.36 Aligned_cols=232 Identities=9% Similarity=0.068 Sum_probs=122.7
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEE---------EeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC---CCCC--
Q 009059 273 PDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPD-- 338 (545)
Q Consensus 273 pdg~~latg~~dg~I~lwd~~~~~~~~---------~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~---~~~~-- 338 (545)
|+..++++.+.+|.|+--.+...+... .++.+ +.+..+........|+..+..|.+.-+.. ....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 345678888999999877765433221 12233 33444444445567777778887655543 3221
Q ss_pred ---eeee---EeccCcccEEEEEEeC--CCCcEEEEEcCCCcEEEEECCC-------CceeeEEeccCCeeEEEEeCCCC
Q 009059 339 ---YSLR---TFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRLG 403 (545)
Q Consensus 339 ---~~~~---~~~~h~~~V~~l~~~p--~~~~ll~s~s~dg~I~lwd~~~-------~~~~~~~~~~~~v~~l~~sp~~~ 403 (545)
.++. .+. ....|.++...+ +....++..+.+|.++-..+.. +.....+.....+..+.......
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED 158 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTC
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCC
Confidence 1111 122 334566664432 1233344777899999887642 11112223334555555555567
Q ss_pred EEEEEECCCeEEEEECCC---------CEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC------Ccc
Q 009059 404 RILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KGE 467 (545)
Q Consensus 404 ~l~~~~~dg~I~i~d~~~---------~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~------~~~ 467 (545)
.++..+.+|.+..++... |.....+. ....|.++....++..|+..+ .|.++..++.... ...
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 899999999988887642 22222233 345677776555556666666 7888888764321 111
Q ss_pred eEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 468 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 468 ~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
....+......+..+....+...++..+.+|.+.-+++..
T Consensus 238 ~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp ESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 1112222224444444433445577777777666665543
No 360
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=88.01 E-value=34 Score=37.28 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=78.8
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCeEEEEeccC-------CccEEEEEEcCC-CCEEEEEeCCCe----E
Q 009059 263 TSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPS-LSRLATSSADRT----V 329 (545)
Q Consensus 263 ~~~V~~l~~spd-g~~latg~~dg~I~lwd~~~~~~~~~l~~h-------~~~V~~l~~sp~-~~~l~t~s~dg~----I 329 (545)
.+.|.+|+++|. ...++.++..+.|...+ +.++.-..+..+ ...|.+|++.|. ...++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 357999999995 45666677677766555 334433333322 246999999984 344544443211 3
Q ss_pred EEEECCCCCeeeeEecc---------CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-------ccCCe
Q 009059 330 RVWDTENPDYSLRTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------CQSGA 393 (545)
Q Consensus 330 ~vwd~~~~~~~~~~~~~---------h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-------~~~~v 393 (545)
.||...++......... ....+..++++|.....++.+...+.|. .....++.-..+. ....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 45544433322222211 0113566888886555555665344332 2222232222221 11357
Q ss_pred eEEEEeCC-CCEEEEEECC-CeEE
Q 009059 394 TQMRFQPR-LGRILAAAIE-NYIS 415 (545)
Q Consensus 394 ~~l~~sp~-~~~l~~~~~d-g~I~ 415 (545)
..+.+.|. .+.++++..+ +.|+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp EEEEECTTSTTCEEEEESSTTCEE
T ss_pred EEEEECCCCCCEEEEEEcCCCeEE
Confidence 78888884 4467777665 4433
No 361
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=86.16 E-value=22 Score=33.16 Aligned_cols=196 Identities=10% Similarity=-0.024 Sum_probs=105.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEE---EECCCCCeeeeEeccCcccEEEEEEeCC-CCcEEEEEcCCCcEEEEECCCCc
Q 009059 307 WITDVRFSPSLSRLATSSADRTVRV---WDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGS 382 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s~dg~I~v---wd~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~ll~s~s~dg~I~lwd~~~~~ 382 (545)
.+..+.......+|+..+.+|.++- |++......- .+. ....|..+.. .+ .+..++..+.+|.++-..+..-.
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 3444433333445555556665543 3332211100 122 3445666543 32 23455578889999998865432
Q ss_pred ------eeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC---------CEEEEEecCCCCCEEEEEEcCCCCEE
Q 009059 383 ------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYL 447 (545)
Q Consensus 383 ------~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~---------~~~~~~~~~h~~~I~~l~~sp~g~~l 447 (545)
....++....+..+........++..+..|.++.+.... |.....+. ....|..+...+++.++
T Consensus 102 ~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 102 YKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYL 180 (276)
T ss_dssp TCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEE
T ss_pred hhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEE
Confidence 222233344566666655667899999999998887532 22222333 23566666555556566
Q ss_pred EEEe-CCcEEEEEcCCCCC----cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE--EeCCC
Q 009059 448 ASVS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTE 507 (545)
Q Consensus 448 ~s~s-dg~I~vwd~~~~~~----~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i--wd~~~ 507 (545)
+..+ .|.++...+..... ..-+..+ .....+..+....+...++..+..|.+.. ++..+
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 6666 88888888753211 1112222 23344544444344456777888887766 76543
No 362
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=85.70 E-value=26 Score=33.54 Aligned_cols=232 Identities=8% Similarity=0.034 Sum_probs=123.8
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCe----EEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC---CCCC-----ee
Q 009059 273 PDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPD-----YS 340 (545)
Q Consensus 273 pdg~~latg~~dg~I~lwd~~~~~----~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~---~~~~-----~~ 340 (545)
|+..++++.+.+|.|+--.+...+ ....++.+ +.+..+........|+..+..|.+.-+.. .... .+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 556678888999999877554221 11123333 33444444445567777778887655543 2211 11
Q ss_pred ee---EeccCcccEEEEEEeCC--CCcEEEEEcCCCcEEEEECCC--------CceeeEEeccCCeeEEEEeCCCCEEEE
Q 009059 341 LR---TFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN--------GSCAGVFKCQSGATQMRFQPRLGRILA 407 (545)
Q Consensus 341 ~~---~~~~h~~~V~~l~~~p~--~~~ll~s~s~dg~I~lwd~~~--------~~~~~~~~~~~~v~~l~~sp~~~~l~~ 407 (545)
+. .+. ....|.++...++ ....++..+.+|.++-..+.. +.....+.....+..+........++.
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEE
T ss_pred hhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEE
Confidence 11 111 2334665544332 123344778899999887742 222222333345555555555678999
Q ss_pred EECCCeEEEEECCC---------CEEEEEecCCCCCEEEEEEcCCCC-EEEEEe-CCcEEEEEcCCCCC----cceEEE-
Q 009059 408 AAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSK----GECIHE- 471 (545)
Q Consensus 408 ~~~dg~I~i~d~~~---------~~~~~~~~~h~~~I~~l~~sp~g~-~l~s~s-dg~I~vwd~~~~~~----~~~i~~- 471 (545)
.+.+|.+..|.... |.....+. ....|.++...+++. .|+..+ .|..+..++..-.. ..-+..
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~ 239 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVIL 239 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECS
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECe
Confidence 99999998887642 22222232 345566665544444 555555 78877777754110 011111
Q ss_pred --EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 472 --LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 472 --~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
+......+..+....+...++..+..|.+..+.+..
T Consensus 240 ~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 240 RELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred eecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 212222454433333445577777777666665543
No 363
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=85.28 E-value=26 Score=33.27 Aligned_cols=186 Identities=11% Similarity=0.104 Sum_probs=108.0
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEE---------EEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CC--
Q 009059 273 PDGKLLATGGHDKKAVLWCTESFTVK---------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---PD-- 338 (545)
Q Consensus 273 pdg~~latg~~dg~I~lwd~~~~~~~---------~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~---~~-- 338 (545)
++..++++.+.+|.|+--.+...+.. ..++.. +.+..+........++..+..|.++-+.... ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 45668888999999998876543221 122333 3455555555566788888899877665431 11
Q ss_pred ---ee---eeEeccCcccEEEEEEeC---CCCcEEEEEcCCCcEEEEECCC-------CceeeEEeccCCeeEEEEeCCC
Q 009059 339 ---YS---LRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRL 402 (545)
Q Consensus 339 ---~~---~~~~~~h~~~V~~l~~~p---~~~~ll~s~s~dg~I~lwd~~~-------~~~~~~~~~~~~v~~l~~sp~~ 402 (545)
.. ...+. ....|.++...+ +..+++ ..+..|.++...+.. |.....+.....+..+......
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll-~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLL-LTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEE-EEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTT
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEE-EEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCC
Confidence 00 01122 223455554433 233444 667799998887743 2222233334456666665556
Q ss_pred CEEEEEECCCeEEEEECCC---------CEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCC
Q 009059 403 GRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 462 (545)
Q Consensus 403 ~~l~~~~~dg~I~i~d~~~---------~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~ 462 (545)
..++..+.+|.+..+.... |.....+. ....|..+....++..|++.+ .|..+..++..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 7899999999999997643 22233333 245666666655555555555 88888888753
No 364
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=84.22 E-value=33 Score=33.52 Aligned_cols=232 Identities=10% Similarity=0.034 Sum_probs=126.3
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCC---------CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE---CCCC-
Q 009059 271 FSPDGKLLATGGHDKKAVLWCTES---------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD---TENP- 337 (545)
Q Consensus 271 ~spdg~~latg~~dg~I~lwd~~~---------~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd---~~~~- 337 (545)
+-|+..++++.+.+|.|+--.+.. +..-..++. .+.+..+........|+..+..|.+.-+. +...
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 346778999999999999765432 122233443 45566666655666777777888766554 3321
Q ss_pred ----Ceeee---EeccCcccEEEEEEeCC--CCcEEEEEcCCCcEEEEECCCC-------ceeeEEeccCCeeEEEEeCC
Q 009059 338 ----DYSLR---TFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNG-------SCAGVFKCQSGATQMRFQPR 401 (545)
Q Consensus 338 ----~~~~~---~~~~h~~~V~~l~~~p~--~~~ll~s~s~dg~I~lwd~~~~-------~~~~~~~~~~~v~~l~~sp~ 401 (545)
...+. .+. ....|.++....+ ....++.++..|.++...+... .....+.....+..+.....
T Consensus 82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~ 160 (370)
T 3l6v_A 82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDG 160 (370)
T ss_dssp TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECS
T ss_pred cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCC
Confidence 11111 122 2345666554321 2334557778999998876432 22222333344555555555
Q ss_pred CCEEEEEECCCeEEEEECCC---------CEEEEEecCCCCCEEEEEEcC------------------------------
Q 009059 402 LGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNT------------------------------ 442 (545)
Q Consensus 402 ~~~l~~~~~dg~I~i~d~~~---------~~~~~~~~~h~~~I~~l~~sp------------------------------ 442 (545)
...++..+..|.+..|+... |.....+. ....|.++...+
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~ 239 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVID 239 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccccccccccccccccc
Confidence 67899999999988887542 22222232 234555554443
Q ss_pred -----CCCEEEEEe-CCcEEEEEcCCCCC----cceEE--EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 443 -----SGEYLASVS-DELVRVWSIGSGSK----GECIH--ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 443 -----~g~~l~s~s-dg~I~vwd~~~~~~----~~~i~--~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
++.+|++.+ .|..+...+..... ..=+. .+....+.+..+.+..+...++..+..|.+.-..+
T Consensus 240 ~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v 314 (370)
T 3l6v_A 240 VADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRG 314 (370)
T ss_dssp -------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEG
T ss_pred cccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeH
Confidence 345666666 78888877653211 01111 22222334544444444455667777775555544
No 365
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=79.81 E-value=43 Score=31.96 Aligned_cols=194 Identities=11% Similarity=0.028 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEE---cCC------CeEEEE---eccCCccEEEE-EEcC--CCCEEEEEeCCCeEE
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWC---TES------FTVKST---LEEHTQWITDV-RFSP--SLSRLATSSADRTVR 330 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd---~~~------~~~~~~---l~~h~~~V~~l-~~sp--~~~~l~t~s~dg~I~ 330 (545)
+..+........|+.-+..|.++... +.. |..+.. +. ....|..+ .+.. +..++++++.+|.|+
T Consensus 44 ~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iK 122 (327)
T 3uc1_A 44 VAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVK 122 (327)
T ss_dssp EEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEE
Confidence 44444444445565566677665543 332 333211 22 23445554 4432 577999999999999
Q ss_pred EEECCCCC------eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC--CC---------ceeeEEeccCCe
Q 009059 331 VWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NG---------SCAGVFKCQSGA 393 (545)
Q Consensus 331 vwd~~~~~------~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~--~~---------~~~~~~~~~~~v 393 (545)
...+..-. .....+.. .+.+..+........++ ..+..|.+..+.+. .- .....+.....+
T Consensus 123 r~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il-l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~V 200 (327)
T 3uc1_A 123 KSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL-LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRL 200 (327)
T ss_dssp EEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE-EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCE
T ss_pred EeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE-EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEE
Confidence 98765421 11122333 34455555544445555 45567887777765 21 111123334457
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEEECCCC-------EEEE--EecCCCCCEEEEEEcCC-CCEEEEEeCCcEEEEEcCC
Q 009059 394 TQMRFQPRLGRILAAAIENYISILDVETQ-------VCRL--KLQGHKNQVHSVCWNTS-GEYLASVSDELVRVWSIGS 462 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~dg~I~i~d~~~~-------~~~~--~~~~h~~~I~~l~~sp~-g~~l~s~sdg~I~vwd~~~ 462 (545)
..+...+.+..++.++..|.++...+..- +-+. .+....+.+..+....+ ..+++...+|.+..++...
T Consensus 201 v~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 201 LSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 77766666678999999999988875421 1122 22221344555444333 3444444477777777643
No 366
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=79.32 E-value=76 Score=34.46 Aligned_cols=145 Identities=12% Similarity=0.145 Sum_probs=71.5
Q ss_pred CccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeeeEeccC-------cccEEEEEEeCCCCcEEEEEcCCCc----
Q 009059 305 TQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDNNSE---- 372 (545)
Q Consensus 305 ~~~V~~l~~sp~-~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h-------~~~V~~l~~~p~~~~ll~s~s~dg~---- 372 (545)
...|.+|+++|. ...++++...+.|...+ ++......+..+ ...|.+|++.|.....++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 468999999985 45666777666655443 222223333221 2469999999854444434332211
Q ss_pred EEEE-ECCCCceeeEEecc----------CCeeEEEEeCCC-CEEEEEECCCeEEEE-EC-CCCEEEEEec---CCCCCE
Q 009059 373 IRYW-SINNGSCAGVFKCQ----------SGATQMRFQPRL-GRILAAAIENYISIL-DV-ETQVCRLKLQ---GHKNQV 435 (545)
Q Consensus 373 I~lw-d~~~~~~~~~~~~~----------~~v~~l~~sp~~-~~l~~~~~dg~I~i~-d~-~~~~~~~~~~---~h~~~I 435 (545)
-.|| ....++.-..+... ..+..+++.|.. +.++++...+.|..= |- ++.+.+..+. .....+
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCCSTTTCE
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCccccCCCCCe
Confidence 2233 33334333332211 124568888753 455555534443321 11 1223222111 112468
Q ss_pred EEEEEcCC-CCEEEEEe
Q 009059 436 HSVCWNTS-GEYLASVS 451 (545)
Q Consensus 436 ~~l~~sp~-g~~l~s~s 451 (545)
..|.++|. +..|+++.
T Consensus 172 ~~i~~~p~~~~~~~~~~ 188 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASA 188 (789)
T ss_dssp EEEEECTTSTTCEEEEE
T ss_pred EEEEECCCCCCEEEEEE
Confidence 88999884 33444444
No 367
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=77.08 E-value=47 Score=30.82 Aligned_cols=194 Identities=11% Similarity=0.015 Sum_probs=105.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEE---EEcCCCeEEEEeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCC-
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVL---WCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD- 338 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~l---wd~~~~~~~~~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~- 338 (545)
+.+..+.......+|+.-+..|.++- |++..+.....+. ....|..+.... +..+++.++.+|.|+...+.+-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 44555555554556666667787664 3333222111143 345566664421 46799999999999998875421
Q ss_pred ----eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC---------CceeeEEeccCCeeEEEEeCCCCEE
Q 009059 339 ----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRFQPRLGRI 405 (545)
Q Consensus 339 ----~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~---------~~~~~~~~~~~~v~~l~~sp~~~~l 405 (545)
.....+.. .+.+..+........++ ..+..|.++.+.... |.....+.....+..+....++..+
T Consensus 103 ~~~G~~~i~lke-gD~l~~~~~~~~~~~il-l~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 103 KAQGMPIIKLTE-GDEVVSIASSVDETHIL-LFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYL 180 (276)
T ss_dssp CSTTEECSCCCT-TCCEEEEEECCSSCEEE-EEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEE
T ss_pred hcCCeEEEecCC-CCEEEEEEEeCCCCEEE-EEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEE
Confidence 11122332 34555555544444455 556688877776532 1111223334456666666666789
Q ss_pred EEEECCCeEEEEECCC-------CEEEEEecCCCCCEEEEEE-cCCCCEEEEEeCCcEEE--EEcC
Q 009059 406 LAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCW-NTSGEYLASVSDELVRV--WSIG 461 (545)
Q Consensus 406 ~~~~~dg~I~i~d~~~-------~~~~~~~~~h~~~I~~l~~-sp~g~~l~s~sdg~I~v--wd~~ 461 (545)
+..+..|.++...+.. ++-+..+ ...+.+..+.. ..+..+++...+|.+.. ++..
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 9999999988887642 1222223 22344544433 22333444444776666 6654
No 368
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=76.80 E-value=58 Score=31.73 Aligned_cols=226 Identities=7% Similarity=0.005 Sum_probs=117.0
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCC------C--CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEE---ECCC-
Q 009059 313 FSPSLSRLATSSADRTVRVWDTEN------P--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW---SINN- 380 (545)
Q Consensus 313 ~sp~~~~l~t~s~dg~I~vwd~~~------~--~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lw---d~~~- 380 (545)
+-++..++++.+.+|.|+--.+.. + ......+. ..+.+..+........+++. +..|.++-+ ++..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~f-T~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTF-TSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEE-ETTSEEEEEEGGGSCBC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEE-eCCCeEEEEEHHHCcCC
Confidence 346778999999999999765431 1 11122233 34456555555554555544 446665544 4432
Q ss_pred -----Cceee---EEeccCCeeEEEEeC---CCCEEEEEECCCeEEEEECCC-------CEEEEEecCCCCCEEEEEEcC
Q 009059 381 -----GSCAG---VFKCQSGATQMRFQP---RLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNT 442 (545)
Q Consensus 381 -----~~~~~---~~~~~~~v~~l~~sp---~~~~l~~~~~dg~I~i~d~~~-------~~~~~~~~~h~~~I~~l~~sp 442 (545)
|..+. .+.....|..+.... .+.+++.++..|.++...+.. +.....+.. .+.+..+....
T Consensus 81 ~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~ 159 (370)
T 3l6v_A 81 GSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTD 159 (370)
T ss_dssp CTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEEC
T ss_pred CcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeC
Confidence 22211 123334566555432 346899999999999887642 222233433 34555555444
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCC----CcceEEEEe-eCCCceEEEEEcC------------------------------
Q 009059 443 SGEYLASVS-DELVRVWSIGSGS----KGECIHELS-CTGNKFHSCVFHP------------------------------ 486 (545)
Q Consensus 443 ~g~~l~s~s-dg~I~vwd~~~~~----~~~~i~~~~-~~~~~v~~~~~sp------------------------------ 486 (545)
....|+..+ .|.+..|+...-. ...-+..+. .....|..+...+
T Consensus 160 ~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~ 239 (370)
T 3l6v_A 160 GDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVID 239 (370)
T ss_dssp SCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC----------------------------
T ss_pred CCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccc
Confidence 444444444 8877777754311 001111111 1233444444333
Q ss_pred -----CCCEEEEEEcCCeEEEEeCCCCeE--------E--EeccCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 009059 487 -----TFPSLLVIGCYETLELWNMTENKT--------L--TLSAHDKLVSSLAASTVNGMVASASHDKCV 541 (545)
Q Consensus 487 -----~~~~l~~~~~dg~I~iwd~~~~~~--------~--~~~~h~~~V~~l~~spd~~~las~s~Dg~I 541 (545)
.+..+++.+..|..+...+..-.. . .+....+.+..+.+..+...|+..+..|.+
T Consensus 240 ~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~ 309 (370)
T 3l6v_A 240 VADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTL 309 (370)
T ss_dssp -------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCE
T ss_pred cccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeE
Confidence 446799999999888877643221 1 222223445554444444455555555544
No 369
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=72.73 E-value=73 Score=31.01 Aligned_cols=229 Identities=10% Similarity=0.113 Sum_probs=113.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe----------eeeEecc-CcccEEEEEEeCCCCcEEEEEcCCCcEEE
Q 009059 307 WITDVRFSPSLSRLATSSADRTVRVWDTENPDY----------SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRY 375 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~----------~~~~~~~-h~~~V~~l~~~p~~~~ll~s~s~dg~I~l 375 (545)
.|..|+. .....+.-..||.|..|-...... ....+.. ....+..+++.......+ .-..||.|+.
T Consensus 54 ~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~-al~~~G~v~~ 130 (389)
T 3kci_A 54 RPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCL-ALSSEGEVYS 130 (389)
T ss_dssp CEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEE-EEETTSCEEE
T ss_pred ceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEE-EEcCCCCEEE
Confidence 3445544 334556667899999996542110 0111111 122344455544434444 4566999999
Q ss_pred EECCCCc---------ee--eEEeccC--CeeEEEEeCCCCEEEEEECCCeEEEEECCC-----------CEEEEEecC-
Q 009059 376 WSINNGS---------CA--GVFKCQS--GATQMRFQPRLGRILAAAIENYISILDVET-----------QVCRLKLQG- 430 (545)
Q Consensus 376 wd~~~~~---------~~--~~~~~~~--~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~-----------~~~~~~~~~- 430 (545)
|-....- .. ..+.... .+..++. .....++...+|.|+.|-... ......+..
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~ 208 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEAL 208 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGG
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEeccc
Confidence 9654211 00 1111111 3444443 346677788899999996532 011112221
Q ss_pred CCCCEEEEEEcCC-CCEEEEEeCCcEEEEEcCCC------CCcc-eE-EEEee-CCCceEEEEEcCCCCEEEEEEcCCeE
Q 009059 431 HKNQVHSVCWNTS-GEYLASVSDELVRVWSIGSG------SKGE-CI-HELSC-TGNKFHSCVFHPTFPSLLVIGCYETL 500 (545)
Q Consensus 431 h~~~I~~l~~sp~-g~~l~s~sdg~I~vwd~~~~------~~~~-~i-~~~~~-~~~~v~~~~~sp~~~~l~~~~~dg~I 500 (545)
....|..++.... ...++...|+.|+.|-.... .... .. ..+.. ....|..++. ...+.++...++.|
T Consensus 209 ~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~--G~~hs~alt~~G~v 286 (389)
T 3kci_A 209 QGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC--GSQFSVALTKSGAV 286 (389)
T ss_dssp TTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEE--ETTEEEEEETTSCE
T ss_pred CCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeC--CCCEEEEEeCCCeE
Confidence 2346777776543 33444445899999965321 0001 11 11111 1223444443 33446666788899
Q ss_pred EEEeCCCC----------e--EEEecc-CCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 501 ELWNMTEN----------K--TLTLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 501 ~iwd~~~~----------~--~~~~~~-h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
+.|-.... . +..+.. ....|..|+.. ....+....||.|..|
T Consensus 287 ~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~w 341 (389)
T 3kci_A 287 YTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTW 341 (389)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEE
T ss_pred EEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEe
Confidence 99965321 1 112221 12345555543 3344555678888877
No 370
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=66.93 E-value=85 Score=29.50 Aligned_cols=223 Identities=10% Similarity=0.031 Sum_probs=113.9
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCee--------eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEE---CCC---
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYS--------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INN--- 380 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~--------~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd---~~~--- 380 (545)
|+..++++.+.+|.|+--.+.+-... ...+..+ +.+..+........++ ..+..|.++-+. +..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll-~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHIL-CFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCCCCS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEE-EEECCCEEEEEEhhHCcCCCC
Confidence 34567888999999987766532110 0112222 3343333333334555 344467655443 332
Q ss_pred ---Cceee---EEeccCCeeEEEEe---CCCCEEEEEECCCeEEEEECCC-------CEEEEEecCCCCCEEEEEEcCC-
Q 009059 381 ---GSCAG---VFKCQSGATQMRFQ---PRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTS- 443 (545)
Q Consensus 381 ---~~~~~---~~~~~~~v~~l~~s---p~~~~l~~~~~dg~I~i~d~~~-------~~~~~~~~~h~~~I~~l~~sp~- 443 (545)
|..+. .+.....+..+... .++.+++..+..|.++...+.. +.....+..+ +.+..+.....
T Consensus 79 ~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 79 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 22111 12333446555442 3456799999999999987642 2222334433 55555544444
Q ss_pred CCEEEEEeCCcEEEEEcCCCCC------cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe--------
Q 009059 444 GEYLASVSDELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-------- 509 (545)
Q Consensus 444 g~~l~s~sdg~I~vwd~~~~~~------~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-------- 509 (545)
..+++...+|.+..++...-.. +.....+. ....|..+....++..+++.+..|.++-.++..-.
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG 236 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 236 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC
Confidence 4444445588887777643211 11111122 24556666555556678999999988887763321
Q ss_pred EE--EeccCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 009059 510 TL--TLSAHDKLVSSLAASTVNGMVASASHDKCV 541 (545)
Q Consensus 510 ~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~I 541 (545)
.. .+..-.+.+..+....+..-|+..+.+|.+
T Consensus 237 ~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ 270 (307)
T 1zi0_A 237 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTL 270 (307)
T ss_dssp EESSCCCTTTCSEEEEEEECTTCEEEEEESSCCE
T ss_pred EEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcE
Confidence 11 222223455454443344445555666654
No 371
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=63.99 E-value=26 Score=39.11 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=33.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL 301 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l 301 (545)
..|.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 35788888888899999999999999999999988765
No 372
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=60.69 E-value=1.1e+02 Score=28.73 Aligned_cols=190 Identities=11% Similarity=0.062 Sum_probs=105.7
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCe------ee--eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC---CC--
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDY------SL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NG-- 381 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~------~~--~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~---~~-- 381 (545)
++..++++.+.+|.|+--.+..-.. -+ ..+... +.+..+........++ ..+..|.++-+... ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll-~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLF-MISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEE-EEECCCeEEEEEHHHCCCCCc
Confidence 4567889999999999886643211 01 112222 3344444433334444 45567876665542 21
Q ss_pred ----ce---eeEEeccCCeeEEEEeC---CCCEEEEEECCCeEEEEECCC-------CEEEEEecCCCCCEEEEEEcCCC
Q 009059 382 ----SC---AGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTSG 444 (545)
Q Consensus 382 ----~~---~~~~~~~~~v~~l~~sp---~~~~l~~~~~dg~I~i~d~~~-------~~~~~~~~~h~~~I~~l~~sp~g 444 (545)
.. ...+.....+..+...+ ...+++..+..|.++...+.. +.....+.. .+.+..+.....+
T Consensus 84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 11 11123334455554433 457899999999999887743 333333443 4566666554444
Q ss_pred CEEEEEe-CCcEEEEEcCCC----CCcceEEEEee-CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 445 EYLASVS-DELVRVWSIGSG----SKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 445 ~~l~s~s-dg~I~vwd~~~~----~~~~~i~~~~~-~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
..++..+ +|.+..+....- ....-+..+.. ....|..+....++..+++.+..|..+..++..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 4454444 888888887541 11111222221 245566666655667789999999888887744
No 373
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=58.29 E-value=1.4e+02 Score=29.08 Aligned_cols=166 Identities=7% Similarity=0.066 Sum_probs=91.1
Q ss_pred CcEEEEEcCCC--eEEEEecc------CCccEEEEEEc---CC----CCEEEEEe-CCCeEEEEECCCCCeeeeEec---
Q 009059 285 KKAVLWCTESF--TVKSTLEE------HTQWITDVRFS---PS----LSRLATSS-ADRTVRVWDTENPDYSLRTFT--- 345 (545)
Q Consensus 285 g~I~lwd~~~~--~~~~~l~~------h~~~V~~l~~s---p~----~~~l~t~s-~dg~I~vwd~~~~~~~~~~~~--- 345 (545)
-+|.+||+.+. ++++++.- ....+..+++. ++ +.+++.+. ..+-|.|+|+.+++. .+.+.
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s-wRv~~~~~ 201 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS-WNVTHPTF 201 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE-EEEECGGG
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE-EEEccCCC
Confidence 36888899888 88776642 23468888887 22 33444443 467899999987653 33221
Q ss_pred -----------cC----cccEEEEEEeCC----CCcEEEEEcCCCcEEEEE---CCCC---ceeeEEecc---CCeeEEE
Q 009059 346 -----------GH----STTVMSLDFHPS----KEDLLCSCDNNSEIRYWS---INNG---SCAGVFKCQ---SGATQMR 397 (545)
Q Consensus 346 -----------~h----~~~V~~l~~~p~----~~~ll~s~s~dg~I~lwd---~~~~---~~~~~~~~~---~~v~~l~ 397 (545)
+. ...|..|+++|+ ++.|.+..-....++--. +++. ..+..+... .....++
T Consensus 202 ~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 202 KAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA 281 (381)
T ss_dssp SCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE
T ss_pred ccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE
Confidence 10 236788888887 555555543333333222 1121 122222222 2234566
Q ss_pred EeCCCCEEEEE-ECCCeEEEEECCC-C----E-EEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 009059 398 FQPRLGRILAA-AIENYISILDVET-Q----V-CRLKLQGHKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 398 ~sp~~~~l~~~-~~dg~I~i~d~~~-~----~-~~~~~~~h~~~I~~l~~sp~g~~l~s~s 451 (545)
+.+..+.++.+ -..+.|..|+..+ . . .+......-..+..+.+..+|.+.+...
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 76443554444 4578999999876 1 1 1111111233577787777776555443
No 374
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=56.99 E-value=1.4e+02 Score=28.82 Aligned_cols=195 Identities=10% Similarity=0.084 Sum_probs=102.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC----------eeeeEecc-CcccEEEEEEeCCCCcEEEEEcCCCcEEE
Q 009059 307 WITDVRFSPSLSRLATSSADRTVRVWDTENPD----------YSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRY 375 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~----------~~~~~~~~-h~~~V~~l~~~p~~~~ll~s~s~dg~I~l 375 (545)
.+..++.+......+.-..||.|..|-..... .....+.. ....|..++... ...+.-..+|.|+.
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~---~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG---AHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECS---SEEEEEETTSCEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCc---CeEEEEeCCCeEEE
Confidence 45556776666677777889999999654211 00111111 122566666543 23334456899999
Q ss_pred EECCCC-c--------eee--EEec--cCCeeEEEEeCCCCEEEEEECCCeEEEEECCC----------C-EEEEEecC-
Q 009059 376 WSINNG-S--------CAG--VFKC--QSGATQMRFQPRLGRILAAAIENYISILDVET----------Q-VCRLKLQG- 430 (545)
Q Consensus 376 wd~~~~-~--------~~~--~~~~--~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~----------~-~~~~~~~~- 430 (545)
|-.... + ... .+.. ...+..++........++...+|.|+.|-... . .....+..
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 262 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL 262 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGG
T ss_pred eCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEeccc
Confidence 975431 1 000 1111 12355565544346777888899999996432 0 11122222
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCC------CCcce--EEEEee-CCCceEEEEEcCCCCEEEEEEcCCeEE
Q 009059 431 HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG------SKGEC--IHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLE 501 (545)
Q Consensus 431 h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~------~~~~~--i~~~~~-~~~~v~~~~~sp~~~~l~~~~~dg~I~ 501 (545)
....|..|+... ...++...+|.|+.|-.... ..... ...+.. ....|..++. ...+.++...++.|+
T Consensus 263 ~~~~v~~v~~G~-~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v~ 339 (389)
T 3kci_A 263 TGLGVVKVECGS-QFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEVY 339 (389)
T ss_dssp TTSCEEEEEEET-TEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTCCEE
T ss_pred CCCcEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCCCCEE
Confidence 223566666532 22344445889999975321 00011 111111 1234554444 344566778899999
Q ss_pred EEeCCC
Q 009059 502 LWNMTE 507 (545)
Q Consensus 502 iwd~~~ 507 (545)
.|=...
T Consensus 340 ~wG~n~ 345 (389)
T 3kci_A 340 TWGDND 345 (389)
T ss_dssp EEECCT
T ss_pred EeeCCC
Confidence 996643
No 375
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=53.94 E-value=1.7e+02 Score=28.64 Aligned_cols=225 Identities=4% Similarity=-0.011 Sum_probs=115.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe------------eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEE
Q 009059 307 WITDVRFSPSLSRLATSSADRTVRVWDTENPDY------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~------------~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~ 374 (545)
.|..|+.. ..+.+.-..||.|..|-...... ....+. ....|..|+... ...+.-..||.|+
T Consensus 76 ~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G~---~hs~al~~~G~v~ 149 (423)
T 3mvd_K 76 DAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAGD---SHSACLLEDGRVF 149 (423)
T ss_dssp SEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEECS---SEEEEEETTSCEE
T ss_pred CceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcCc---CeEEEEeCCCeEE
Confidence 46666654 44666667899999996543110 011111 234566666543 2333445689999
Q ss_pred EEEC--CC-Cce--------eeEEec--cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCC-------------------
Q 009059 375 YWSI--NN-GSC--------AGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQ------------------- 422 (545)
Q Consensus 375 lwd~--~~-~~~--------~~~~~~--~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~------------------- 422 (545)
.|-. .. +++ ...... ...|..++. ...+.++...+|.|+.|-....
T Consensus 150 ~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~ 227 (423)
T 3mvd_K 150 AWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIAS--GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGK 227 (423)
T ss_dssp EEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTT
T ss_pred EEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEec--CCCeEEEEecCCeEEEeeCCcCCccCCCccccccccccccc
Confidence 9985 32 221 011111 223444544 3356777888999999953211
Q ss_pred ----EEEEEecCCCCCEEEEEEcCCCCEEEE-EeCCcEEEEEcCCCC--------CcceEEEEeeCCCceEEEEEcCCCC
Q 009059 423 ----VCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSIGSGS--------KGECIHELSCTGNKFHSCVFHPTFP 489 (545)
Q Consensus 423 ----~~~~~~~~h~~~I~~l~~sp~g~~l~s-~sdg~I~vwd~~~~~--------~~~~i~~~~~~~~~v~~~~~sp~~~ 489 (545)
.+..........|..++.... ..++. ..++.|+.|-..... ..............|..++. ...
T Consensus 228 ~~~~~p~~v~~~~~~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G~~ 304 (423)
T 3mvd_K 228 RDLLRPTQLIITRAKPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQH 304 (423)
T ss_dssp TTTSSCEEECCTTCCCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--CSS
T ss_pred ccccCCeEEeecCCccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--ccC
Confidence 111111122345666655432 22233 248888888654311 01111111112344554443 344
Q ss_pred EEEEEEcCCeEEEEeCCCC-------------eEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 490 SLLVIGCYETLELWNMTEN-------------KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 490 ~l~~~~~dg~I~iwd~~~~-------------~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
+.++...++.|+.|=.... .+..+..-...|..|+... ...+.-..||.|+.|
T Consensus 305 ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~--~hs~alt~~G~v~~w 370 (423)
T 3mvd_K 305 HTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE--VCSYAVTIDGKLYSW 370 (423)
T ss_dssp EEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET--TEEEEEETTSCEEEE
T ss_pred eEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCC--CeEEEEcCCCCEEEE
Confidence 5677788899999964321 1112222233576776543 333444678888887
No 376
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=50.26 E-value=2.6e+02 Score=29.80 Aligned_cols=103 Identities=11% Similarity=0.079 Sum_probs=53.2
Q ss_pred cEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeeeEeccC-------cccEEEEEEeCCC-CcEEEEEcC-C-----C
Q 009059 307 WITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGH-------STTVMSLDFHPSK-EDLLCSCDN-N-----S 371 (545)
Q Consensus 307 ~V~~l~~sp~~-~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h-------~~~V~~l~~~p~~-~~ll~s~s~-d-----g 371 (545)
.|..|+++|.. ..++.+...+.|..++-. ......+..+ ...|.+|+++|.. +.+++..+. . +
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~--G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPS--TETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETT--TTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCC--CCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 79999999863 456666656655544422 2223333221 2459999999854 344444321 0 1
Q ss_pred cEEEEEC-CCCceeeEEecc----------CCeeEEEEeCCC-CEEEEEECC
Q 009059 372 EIRYWSI-NNGSCAGVFKCQ----------SGATQMRFQPRL-GRILAAAIE 411 (545)
Q Consensus 372 ~I~lwd~-~~~~~~~~~~~~----------~~v~~l~~sp~~-~~l~~~~~d 411 (545)
...||.- ..++.-..+... ..+..++++|.. +.++++...
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 2334433 333322222211 113678888854 556666533
No 377
>4a9z_A Tumor protein 63; transcription; HET: PE4; 2.29A {Homo sapiens}
Probab=49.32 E-value=9.7 Score=26.01 Aligned_cols=12 Identities=17% Similarity=0.490 Sum_probs=8.1
Q ss_pred CCchhhhhhchH
Q 009059 62 GDNDLLIKLTTT 73 (545)
Q Consensus 62 ~~~~~~~~~~~~ 73 (545)
..-+||.|++..
T Consensus 15 e~yE~L~kinEs 26 (61)
T 4a9z_A 15 ETYEMLLKIKES 26 (61)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 345788887765
No 378
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=49.00 E-value=88 Score=23.96 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=16.1
Q ss_pred EEEEcCCCCEEEEEeCCcEEEEEcCC
Q 009059 437 SVCWNTSGEYLASVSDELVRVWSIGS 462 (545)
Q Consensus 437 ~l~~sp~g~~l~s~sdg~I~vwd~~~ 462 (545)
.+.+..+|.+++...++. .+|...+
T Consensus 54 ~L~l~~dGnLvL~d~~~~-~vWss~t 78 (105)
T 4h3o_A 54 SAVLQSDGNFVVYDSSGR-SLWASHS 78 (105)
T ss_dssp EEEECTTSCEEEECTTCC-EEEECCC
T ss_pred EEEEeCCccEEEECCCcE-EEEEecC
Confidence 477778888777655543 4676543
No 379
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=44.81 E-value=67 Score=33.51 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=41.4
Q ss_pred eEEEEEcCCCCEEEEEeCC------------CcEEEEEcCCCeEEEEeccC-CccEEEEEEcCCCCEEEEE
Q 009059 266 VESCHFSPDGKLLATGGHD------------KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATS 323 (545)
Q Consensus 266 V~~l~~spdg~~latg~~d------------g~I~lwd~~~~~~~~~l~~h-~~~V~~l~~sp~~~~l~t~ 323 (545)
.--|+|+|.|.+++.-..+ +.+.+.+..+++....+.++ ...++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4568999999876654322 23556676777777666554 4679999999999887765
No 380
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=43.94 E-value=88 Score=32.42 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=42.8
Q ss_pred eeEEEEeCCCCEEEEEEC------------CCeEEEEECCCCEEEEEecCC-CCCEEEEEEcCCCCEEEEEe
Q 009059 393 ATQMRFQPRLGRILAAAI------------ENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~------------dg~I~i~d~~~~~~~~~~~~h-~~~I~~l~~sp~g~~l~s~s 451 (545)
...|.|.++|..+++... .+.|+.++..+++....+.+. ...++.++|+||++.|++.-
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 567999999766654332 126888888888776666543 45799999999999887754
No 381
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=43.47 E-value=98 Score=32.06 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=43.1
Q ss_pred CCeEEEEEcCCCCEEEEEeC------------CCcEEEEEcCCCeEEEEeccC-CccEEEEEEcCCCCEEEEE
Q 009059 264 SKVESCHFSPDGKLLATGGH------------DKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATS 323 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~------------dg~I~lwd~~~~~~~~~l~~h-~~~V~~l~~sp~~~~l~t~ 323 (545)
.....|.|.++|.+.+.... ...|..++..++++...+... ...++.++|+||++.|+++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 45678999999987773321 125667777778776666543 3568999999999988776
No 382
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=43.21 E-value=1.1e+02 Score=23.63 Aligned_cols=59 Identities=10% Similarity=-0.044 Sum_probs=30.3
Q ss_pred CEEEEEECCCeEEEEECCCCEEEEEecCC-CCCEEEEEEcCCCCEEEEEeCCcEEEEEcCC
Q 009059 403 GRILAAAIENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVSDELVRVWSIGS 462 (545)
Q Consensus 403 ~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~ 462 (545)
.+.+.-..||.+.+|+...+..+..-... ...-..+.+..+|.+++...++.+ +|...+
T Consensus 25 ~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 25 DYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp TEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECTTSCE-EEECSC
T ss_pred CEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECCCCCE-EEECCC
Confidence 44444445555666654333333322211 112245677788888776555544 787554
No 383
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.86 E-value=4e+02 Score=29.49 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=32.2
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 429 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~ 429 (545)
+.++...++..++++.+.|+.+++|++.++.++.+..
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 5677778888899999999999999999999887653
No 384
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=41.85 E-value=70 Score=33.36 Aligned_cols=58 Identities=14% Similarity=0.074 Sum_probs=41.4
Q ss_pred eeEEEEeCCCCEEEEEECC------------CeEEEEECCCCEEEEEecCC-CCCEEEEEEcCCCCEEEEE
Q 009059 393 ATQMRFQPRLGRILAAAIE------------NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASV 450 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~d------------g~I~i~d~~~~~~~~~~~~h-~~~I~~l~~sp~g~~l~s~ 450 (545)
.-.|+|++.|..+++-..+ +.+.+.+..+++....+.++ ...++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4678999997754443322 24677777788776666554 4689999999999888764
No 385
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=41.14 E-value=55 Score=37.30 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=31.2
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 429 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~ 429 (545)
+.+++..++..++++.+.|+.+++|++.++.++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4556667777899999999999999999999988753
No 386
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=39.63 E-value=2.5e+02 Score=26.49 Aligned_cols=194 Identities=6% Similarity=0.023 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcC---------CCeEEEE---eccCCccEEEE-EEcC--CCCEEEEEeCCCeEE
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTE---------SFTVKST---LEEHTQWITDV-RFSP--SLSRLATSSADRTVR 330 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~---------~~~~~~~---l~~h~~~V~~l-~~sp--~~~~l~t~s~dg~I~ 330 (545)
+..+........|+..+..|.++-+... .|.++.. +. ....|..+ .... ++.+|+.++.+|.++
T Consensus 41 l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iK 119 (323)
T 1wp5_A 41 LLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVK 119 (323)
T ss_dssp EEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEE
T ss_pred EEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEE
Confidence 3333333444566666777876665432 2332211 22 22345544 3432 256899999999999
Q ss_pred EEECCCC-------CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC----c---eee--EEeccCCee
Q 009059 331 VWDTENP-------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----S---CAG--VFKCQSGAT 394 (545)
Q Consensus 331 vwd~~~~-------~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~----~---~~~--~~~~~~~v~ 394 (545)
...+..- ......+... +.+..+........++ ..+.+|.+..+....- + -+. .+.....+.
T Consensus 120 rt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~-l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv 197 (323)
T 1wp5_A 120 KTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELF-LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIV 197 (323)
T ss_dssp EEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEE-EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEE
T ss_pred EeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEE-EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEE
Confidence 9877421 1111123322 4555555544444455 5566888777766421 1 111 222334466
Q ss_pred EEEEeCCCC-EEEEEECCCeEEEEECCC-------CEEEEEe---cCCCCCEEEE-EEcCCCCEEEEEeCCcEEEEEcCC
Q 009059 395 QMRFQPRLG-RILAAAIENYISILDVET-------QVCRLKL---QGHKNQVHSV-CWNTSGEYLASVSDELVRVWSIGS 462 (545)
Q Consensus 395 ~l~~sp~~~-~l~~~~~dg~I~i~d~~~-------~~~~~~~---~~h~~~I~~l-~~sp~g~~l~s~sdg~I~vwd~~~ 462 (545)
.+...+++. .+++.+..|..+..++.. ++-+..+ +.....+..+ .+.++..+++....|.+..+.+..
T Consensus 198 ~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 198 SGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp EEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred EEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 665544445 788899999888877643 1112222 1222245433 344444455545577666666543
No 387
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=38.50 E-value=23 Score=40.50 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=32.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL 301 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l 301 (545)
..|.+++..++..+|++-+.|+++|||++.+++++.+.
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 34566777788899999999999999999999988765
No 388
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=37.49 E-value=2.3e+02 Score=25.60 Aligned_cols=141 Identities=10% Similarity=0.052 Sum_probs=74.5
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEE---ECCC----Ccee---eEEe
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW---SINN----GSCA---GVFK 388 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lw---d~~~----~~~~---~~~~ 388 (545)
.+++.+.+|.|+--...........+.... .+..+........+++ .+..|.++-+ ++.. |..+ ..+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~D-~l~~~~~~~t~~~ll~-~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAGD-SFKAAVKGKSNQPVVF-VDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTTC-CEEEEEEEETTSCEEE-EETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCCC-EEEEEEEeCCCCEEEE-EeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 456677888887665543211111233333 3434333333345553 4446765554 4422 2211 1122
Q ss_pred ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC-------CEEEEEecCCCCCEEEEEEc-CCCCEEEEEe-CCcEEEEE
Q 009059 389 CQSGATQMRFQPRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWN-TSGEYLASVS-DELVRVWS 459 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~-------~~~~~~~~~h~~~I~~l~~s-p~g~~l~s~s-dg~I~vwd 459 (545)
....+..+....++.+++.++..|.++...+.. +.....+.. .+.+..+... ..+..|+..+ +|.+..+.
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 334566664434557788999999999987742 333444442 3455555554 2344455555 88888888
Q ss_pred cCC
Q 009059 460 IGS 462 (545)
Q Consensus 460 ~~~ 462 (545)
+..
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 753
No 389
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=36.93 E-value=50 Score=35.22 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=29.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE 303 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~ 303 (545)
.|.|+.+ +..+|++-+.|+++|+|++.+++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555555 367999999999999999999998876543
No 390
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=36.82 E-value=2.4e+02 Score=25.53 Aligned_cols=142 Identities=9% Similarity=-0.029 Sum_probs=74.8
Q ss_pred EEEEEeCCCcEEEEEcCCCeE-EEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC---CC---Ceeee---Eecc
Q 009059 277 LLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NP---DYSLR---TFTG 346 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~~-~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~---~~---~~~~~---~~~~ 346 (545)
.+++.+.+|.|+--....... ...++... .+..+........|+..+..|.+.-+... .. ..++. .+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~D-~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~- 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAGD-SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP- 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTTC-CEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCCC-EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-
Confidence 345556666665544332111 11233333 34444333344466666778876555432 11 11111 122
Q ss_pred CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-------CceeeEEeccCCeeEEEEe-CCCCEEEEEECCCeEEEEE
Q 009059 347 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQ-PRLGRILAAAIENYISILD 418 (545)
Q Consensus 347 h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~-------~~~~~~~~~~~~v~~l~~s-p~~~~l~~~~~dg~I~i~d 418 (545)
....|.++....++.+++ .++..|.++...+.. +.....+.....+..+... ..+..++..+.+|.+..|.
T Consensus 82 ~~e~Iv~~~~~~~~~~ll-l~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLL-MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTTCEEE-EEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCCCEEE-EEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 234676664433434444 778899999887742 2222333333445555554 3456899999999998888
Q ss_pred CCC
Q 009059 419 VET 421 (545)
Q Consensus 419 ~~~ 421 (545)
+..
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 753
No 391
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=35.19 E-value=3.2e+02 Score=26.46 Aligned_cols=229 Identities=12% Similarity=0.156 Sum_probs=110.9
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe----------eeeEecc-CcccEEEEEEeCCCCcEEEEEcCCCcE
Q 009059 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----------SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEI 373 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~----------~~~~~~~-h~~~V~~l~~~p~~~~ll~s~s~dg~I 373 (545)
...|..|+.- ....+.-..||.|..|-...... ....+.. ....|..++.-.. +.++....++.|
T Consensus 15 ~~~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~--ht~al~~~gg~v 90 (406)
T 4d9s_A 15 PRKVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD--HTVAYSQSGMEV 90 (406)
T ss_dssp CCCEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--EEEEEETTTTEE
T ss_pred ccceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcc--eEEEEECCCCEE
Confidence 3456666653 33555556788888886543210 0111111 1235777766532 344344434589
Q ss_pred EEEECCCC------c---eeeE--Eec--cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCC-----------EEEEEec
Q 009059 374 RYWSINNG------S---CAGV--FKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQ-----------VCRLKLQ 429 (545)
Q Consensus 374 ~lwd~~~~------~---~~~~--~~~--~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~-----------~~~~~~~ 429 (545)
+.|-.... . .... +.. ...|..++. ...+.++...+|.|+.|-.... .....+.
T Consensus 91 ~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~--G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 91 YSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIAC--GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEE--ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 99965321 1 1111 111 113555544 3467777888999999965421 1112222
Q ss_pred C-CCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCC------Ccce-EE-EEe-eCCCceEEEEEcCCCCEEEEEEcCCe
Q 009059 430 G-HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS------KGEC-IH-ELS-CTGNKFHSCVFHPTFPSLLVIGCYET 499 (545)
Q Consensus 430 ~-h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~------~~~~-i~-~~~-~~~~~v~~~~~sp~~~~l~~~~~dg~ 499 (545)
. ....|..++... ...++...+|.|+.|-..... .... .. .+. .....|..++. ...+.++...++.
T Consensus 169 ~~~~~~i~~va~G~-~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~--G~~ht~~l~~~G~ 245 (406)
T 4d9s_A 169 AFEGIRIKMVAAGA-EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC--GWRHTISVSYSGA 245 (406)
T ss_dssp GGTTCCEEEEEECS-SEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEE--CSSEEEEEETTCC
T ss_pred ccCCCcEEEEecCC-CeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEE--CCCcEEEEcCCCC
Confidence 1 223677776532 233344448899999753311 0011 11 111 11233444443 3445667778889
Q ss_pred EEEEeCCCCe----------EE--Eecc-CCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 500 LELWNMTENK----------TL--TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 500 I~iwd~~~~~----------~~--~~~~-h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
|+.|-....- .. .+.. ....|..|+.- ....+.-..||.|+.|
T Consensus 246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~~hs~alt~~G~v~~w 301 (406)
T 4d9s_A 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG--WRHTMALTSDGKLYGW 301 (406)
T ss_dssp EEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred EEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec--CCEEEEEcCCCeEEEe
Confidence 9998643221 11 1111 12335555432 3344444567777766
No 392
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=32.91 E-value=1.6e+02 Score=31.46 Aligned_cols=61 Identities=7% Similarity=-0.002 Sum_probs=40.0
Q ss_pred CCCEEEEEECCCeEEEEECCCCEEEEEecCCCC-------------CEEEEEEcCCCCEEEEEe---CCcEEEEEcCCC
Q 009059 401 RLGRILAAAIENYISILDVETQVCRLKLQGHKN-------------QVHSVCWNTSGEYLASVS---DELVRVWSIGSG 463 (545)
Q Consensus 401 ~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~-------------~I~~l~~sp~g~~l~s~s---dg~I~vwd~~~~ 463 (545)
+..++++.+.|..+++|+++++.++....-... .-.-+.. -+.++++-. +|..++|.+...
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl--~~~~lv~y~P~~~G~Fk~~~l~~~ 306 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSL--YNNTLVTLLPLENGLFQMGTLLVD 306 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEE--SSSEEEEEETTTTCEEEEEEEEC-
T ss_pred CCcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhh--eeeEEEEEecCCCCeEEEEEEEEc
Confidence 358999999999999999999998876543111 0011111 125555443 668999988654
No 393
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=28.62 E-value=4.1e+02 Score=25.67 Aligned_cols=267 Identities=9% Similarity=0.063 Sum_probs=128.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-C----------eEEEEecc-CCccEEEEEEcCCCCEEEEEeCC-CeEE
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTES-F----------TVKSTLEE-HTQWITDVRFSPSLSRLATSSAD-RTVR 330 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~-~----------~~~~~l~~-h~~~V~~l~~sp~~~~l~t~s~d-g~I~ 330 (545)
..|..++... ...+.-..|+.|+.|=... + .....+.. ....|..|+...+ +.+....| +.|.
T Consensus 16 ~~v~~ia~G~--~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~--ht~al~~~gg~v~ 91 (406)
T 4d9s_A 16 RKVLIISAGA--SHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD--HTVAYSQSGMEVY 91 (406)
T ss_dssp CCEEEEEECS--SEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--EEEEEETTTTEEE
T ss_pred cceEEEecCC--CeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcc--eEEEEECCCCEEE
Confidence 3465565543 2334445678888884322 1 11112211 2235777776433 33333455 5899
Q ss_pred EEECCCCCe----------eeeEecc-CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce---------e--eEEe
Q 009059 331 VWDTENPDY----------SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---------A--GVFK 388 (545)
Q Consensus 331 vwd~~~~~~----------~~~~~~~-h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~---------~--~~~~ 388 (545)
.|-...... ....+.. ....|..|+.-. ...+.-..+|.|+.|-....-. . ..+.
T Consensus 92 ~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~---~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 92 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGD---SHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEECh---hheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 996532110 0111111 223577776642 2333455689999997543211 0 1111
Q ss_pred ccC--CeeEEEEeCCCCEEEEEECCCeEEEEECCCC----------E-EEEEecC-CCCCEEEEEEcCCCCEEEEEeCCc
Q 009059 389 CQS--GATQMRFQPRLGRILAAAIENYISILDVETQ----------V-CRLKLQG-HKNQVHSVCWNTSGEYLASVSDEL 454 (545)
Q Consensus 389 ~~~--~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~----------~-~~~~~~~-h~~~I~~l~~sp~g~~l~s~sdg~ 454 (545)
... .+..++. ...+.++...+|.|+.|-.... . ....+.. ....|..++... ...++...+|.
T Consensus 169 ~~~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~-~ht~~l~~~G~ 245 (406)
T 4d9s_A 169 AFEGIRIKMVAA--GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW-RHTISVSYSGA 245 (406)
T ss_dssp GGTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECS-SEEEEEETTCC
T ss_pred ccCCCcEEEEec--CCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECC-CcEEEEcCCCC
Confidence 111 3444443 3456777788999999964321 1 1111211 224566666532 23344444888
Q ss_pred EEEEEcCCCCC------cce-E-EEEee-CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC----------e--EEEe
Q 009059 455 VRVWSIGSGSK------GEC-I-HELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN----------K--TLTL 513 (545)
Q Consensus 455 I~vwd~~~~~~------~~~-i-~~~~~-~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~----------~--~~~~ 513 (545)
|+.|-...... ... . ..+.. ....|..++. ...+.++...++.|+.|=.... . +..+
T Consensus 246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 323 (406)
T 4d9s_A 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG--GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQV 323 (406)
T ss_dssp EEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEE
T ss_pred EEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEe--cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEE
Confidence 88887543210 011 1 11111 1223444433 3445667778889999964321 1 1111
Q ss_pred c-cCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 514 S-AHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 514 ~-~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
. .....|..|+.- ....+.-..||.|+.|
T Consensus 324 ~~~~~~~v~~va~G--~~hs~alt~~G~v~~w 353 (406)
T 4d9s_A 324 RFPDDQKVVQVSCG--WRHTLAVTERNNVFAW 353 (406)
T ss_dssp CCGGGCCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred eccCCCcEEEEEeC--CCeEEEEeCCCCEEEe
Confidence 1 122345555543 3344555677888777
No 394
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=25.07 E-value=2.3e+02 Score=21.69 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=14.7
Q ss_pred EEEEcCCCCEEEEEeCCcEEEEEc
Q 009059 437 SVCWNTSGEYLASVSDELVRVWSI 460 (545)
Q Consensus 437 ~l~~sp~g~~l~s~sdg~I~vwd~ 460 (545)
.+.+..+|.+++...++.+.+|..
T Consensus 53 ~l~l~~dGNLVl~~~~~~~~vW~S 76 (111)
T 3mez_A 53 TLRLNNRGQLEIHSANSNTPVWVY 76 (111)
T ss_dssp EEEECTTSCEEEECSSCSSCSEEE
T ss_pred EEEEcCCCcEEEEeCCCCEEEEEe
Confidence 456677777776654544456654
No 395
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=24.85 E-value=6.4e+02 Score=26.68 Aligned_cols=103 Identities=12% Similarity=0.088 Sum_probs=55.9
Q ss_pred CeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCeEEEEeccC-------CccEEEEEEcC-CCCEEEEEeCC-------Ce
Q 009059 265 KVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSP-SLSRLATSSAD-------RT 328 (545)
Q Consensus 265 ~V~~l~~spdg-~~latg~~dg~I~lwd~~~~~~~~~l~~h-------~~~V~~l~~sp-~~~~l~t~s~d-------g~ 328 (545)
.|..|+++|.. ..|..+...+.|..++- .++.-..+..+ ...|.+|++.| +...++.+... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 79999999953 45556665666666552 33333333222 24599999998 33444444321 12
Q ss_pred EEEEECCCCCeeeeEec-cC--------cccEEEEEEeCCCCcEEEEEc
Q 009059 329 VRVWDTENPDYSLRTFT-GH--------STTVMSLDFHPSKEDLLCSCD 368 (545)
Q Consensus 329 I~vwd~~~~~~~~~~~~-~h--------~~~V~~l~~~p~~~~ll~s~s 368 (545)
..||...++........ .. ...+..|+++|.....++.+.
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 45665554432222221 11 012467889887655555555
No 396
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=21.82 E-value=2.7e+02 Score=21.18 Aligned_cols=25 Identities=8% Similarity=0.304 Sum_probs=15.5
Q ss_pred EEEEEcCCCCEEEEEeCCcEEEEEcC
Q 009059 436 HSVCWNTSGEYLASVSDELVRVWSIG 461 (545)
Q Consensus 436 ~~l~~sp~g~~l~s~sdg~I~vwd~~ 461 (545)
..+.+..+|.+++...++. .+|...
T Consensus 52 ~~l~l~~dGNLvl~~~~~~-~~W~S~ 76 (109)
T 3dzw_A 52 CHLSMQSDGNLVVYSPRNN-PIWASN 76 (109)
T ss_dssp CEEEECTTSCEEEECTTSC-EEEECC
T ss_pred EEEEEeCCCCEEEECCCCC-EEEECC
Confidence 3466777888777644443 477644
No 397
>3p57_P Histone acetyltransferase P300; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3io2_A
Probab=20.40 E-value=46 Score=26.16 Aligned_cols=14 Identities=36% Similarity=0.204 Sum_probs=9.1
Q ss_pred hhhhchHHHHHHHH
Q 009059 67 LIKLTTTQIQQQQQ 80 (545)
Q Consensus 67 ~~~~~~~q~qq~~q 80 (545)
-||.+++|+|.|+.
T Consensus 85 ~iK~~~~q~q~q~r 98 (112)
T 3p57_P 85 NIKQKLRQQQLQHR 98 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 47777776665544
Done!