Query 009060
Match_columns 545
No_of_seqs 222 out of 1415
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 19:55:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0028 IlvB Thiamine pyrophos 100.0 1.1E-99 2E-104 810.9 46.7 493 26-540 1-510 (550)
2 PLN02573 pyruvate decarboxylas 100.0 4.9E-98 1E-102 812.4 52.0 519 23-541 12-530 (578)
3 PRK08979 acetolactate synthase 100.0 3.5E-94 7.6E-99 784.2 48.0 500 25-540 2-524 (572)
4 TIGR01504 glyox_carbo_lig glyo 100.0 3.8E-94 8.3E-99 784.2 47.8 495 26-540 2-530 (588)
5 PRK07979 acetolactate synthase 100.0 1.1E-93 2.4E-98 781.2 47.6 501 24-540 1-524 (574)
6 PRK06965 acetolactate synthase 100.0 2.2E-93 4.9E-98 779.4 48.3 509 14-540 8-540 (587)
7 PRK09107 acetolactate synthase 100.0 6.3E-93 1.4E-97 775.6 48.3 499 25-540 9-533 (595)
8 PRK07418 acetolactate synthase 100.0 1.2E-92 2.6E-97 777.8 49.9 508 13-540 5-538 (616)
9 PRK06466 acetolactate synthase 100.0 8E-93 1.7E-97 774.4 48.1 499 25-540 2-526 (574)
10 PRK07789 acetolactate synthase 100.0 1.3E-92 2.7E-97 777.1 49.8 501 23-540 27-554 (612)
11 PRK07282 acetolactate synthase 100.0 4.5E-93 9.7E-98 773.9 45.1 497 25-540 8-521 (566)
12 PRK11269 glyoxylate carboligas 100.0 2.1E-92 4.6E-97 773.0 48.6 496 25-540 2-531 (591)
13 PRK06725 acetolactate synthase 100.0 7.3E-92 1.6E-96 763.6 47.9 493 26-540 14-524 (570)
14 TIGR03393 indolpyr_decarb indo 100.0 9.5E-92 2.1E-96 760.5 48.3 501 27-540 1-506 (539)
15 PRK08978 acetolactate synthase 100.0 1.2E-91 2.7E-96 762.1 47.5 490 27-540 1-504 (548)
16 PRK06048 acetolactate synthase 100.0 2.6E-91 5.7E-96 760.5 48.8 496 25-540 6-517 (561)
17 TIGR03457 sulphoacet_xsc sulfo 100.0 3.3E-91 7.2E-96 762.4 49.3 493 26-540 1-533 (579)
18 PRK08527 acetolactate synthase 100.0 3.1E-91 6.8E-96 760.2 47.6 496 26-540 2-517 (563)
19 PRK06456 acetolactate synthase 100.0 5.1E-91 1.1E-95 761.1 48.3 499 27-540 2-524 (572)
20 TIGR03394 indol_phenyl_DC indo 100.0 7E-91 1.5E-95 750.5 48.3 492 28-540 1-499 (535)
21 PLN02470 acetolactate synthase 100.0 4.8E-91 1E-95 761.4 47.6 498 25-540 11-536 (585)
22 PRK08322 acetolactate synthase 100.0 5.3E-91 1.1E-95 758.0 47.5 491 27-540 1-507 (547)
23 CHL00099 ilvB acetohydroxyacid 100.0 1.2E-90 2.5E-95 757.7 48.3 500 24-540 7-534 (585)
24 PRK07710 acetolactate synthase 100.0 1.1E-90 2.3E-95 757.3 47.2 498 24-540 13-527 (571)
25 PRK08273 thiamine pyrophosphat 100.0 1.2E-90 2.5E-95 759.4 46.8 496 25-540 1-525 (597)
26 PRK08155 acetolactate synthase 100.0 2.1E-90 4.6E-95 754.4 48.0 495 26-540 12-522 (564)
27 PRK08617 acetolactate synthase 100.0 1.8E-90 3.8E-95 753.7 46.8 493 26-540 4-515 (552)
28 PRK08611 pyruvate oxidase; Pro 100.0 3.9E-90 8.4E-95 752.3 48.1 492 24-540 1-509 (576)
29 PRK06882 acetolactate synthase 100.0 4.6E-90 9.9E-95 753.8 47.6 501 24-540 1-524 (574)
30 TIGR02418 acolac_catab acetola 100.0 4.4E-90 9.5E-95 748.6 46.7 490 29-540 1-509 (539)
31 PRK09124 pyruvate dehydrogenas 100.0 7.3E-90 1.6E-94 751.7 47.5 491 25-540 1-509 (574)
32 TIGR00118 acolac_lg acetolacta 100.0 1.2E-89 2.7E-94 748.1 47.3 496 27-540 1-515 (558)
33 PRK08199 thiamine pyrophosphat 100.0 1.1E-89 2.4E-94 747.7 46.7 492 25-540 6-517 (557)
34 PRK06154 hypothetical protein; 100.0 2.1E-89 4.5E-94 743.6 48.5 490 23-540 16-531 (565)
35 PRK06276 acetolactate synthase 100.0 1.6E-89 3.5E-94 749.6 47.3 497 27-540 1-522 (586)
36 PRK06546 pyruvate dehydrogenas 100.0 2.3E-89 5E-94 745.9 47.3 490 25-540 1-509 (578)
37 PRK05858 hypothetical protein; 100.0 3.2E-89 6.9E-94 741.2 47.2 489 24-540 2-509 (542)
38 PRK07525 sulfoacetaldehyde ace 100.0 4.1E-89 8.9E-94 746.6 47.5 494 25-540 4-538 (588)
39 PRK06457 pyruvate dehydrogenas 100.0 2.3E-89 5.1E-94 743.4 44.9 480 27-540 2-498 (549)
40 TIGR02720 pyruv_oxi_spxB pyruv 100.0 6.1E-89 1.3E-93 742.8 47.1 492 29-540 1-509 (575)
41 PRK07524 hypothetical protein; 100.0 3.6E-88 7.7E-93 733.0 46.8 488 27-540 2-508 (535)
42 PRK07064 hypothetical protein; 100.0 1.7E-88 3.7E-93 737.9 44.2 486 26-540 2-507 (544)
43 TIGR03254 oxalate_oxc oxalyl-C 100.0 1.2E-87 2.6E-92 731.3 46.7 493 26-540 2-517 (554)
44 COG3961 Pyruvate decarboxylase 100.0 6.8E-88 1.5E-92 675.6 40.2 509 24-540 1-513 (557)
45 PRK08266 hypothetical protein; 100.0 2.5E-87 5.5E-92 727.9 45.5 484 25-540 2-504 (542)
46 PRK09259 putative oxalyl-CoA d 100.0 3.8E-87 8.2E-92 729.0 46.3 494 24-540 7-525 (569)
47 PRK06112 acetolactate synthase 100.0 2.9E-86 6.3E-91 723.9 48.4 500 22-540 9-539 (578)
48 PRK08327 acetolactate synthase 100.0 3.9E-86 8.5E-91 719.9 42.7 492 26-540 6-542 (569)
49 PRK07586 hypothetical protein; 100.0 2.4E-85 5.1E-90 708.1 48.0 472 27-540 1-494 (514)
50 PRK12474 hypothetical protein; 100.0 4.1E-85 9E-90 705.3 46.8 469 25-540 3-498 (518)
51 PRK07092 benzoylformate decarb 100.0 1.3E-84 2.8E-89 703.9 46.9 488 23-540 8-509 (530)
52 KOG1185 Thiamine pyrophosphate 100.0 3.2E-85 6.9E-90 647.2 37.8 495 23-540 10-538 (571)
53 KOG1184 Thiamine pyrophosphate 100.0 3.9E-84 8.5E-89 645.5 39.7 518 25-543 2-519 (561)
54 KOG4166 Thiamine pyrophosphate 100.0 1.3E-85 2.9E-90 637.9 28.2 499 24-540 88-626 (675)
55 PRK07449 2-succinyl-5-enolpyru 100.0 2.2E-83 4.8E-88 700.8 32.2 491 27-540 9-528 (568)
56 PLN02980 2-oxoglutarate decarb 100.0 8.8E-75 1.9E-79 688.2 36.6 497 27-540 301-868 (1655)
57 TIGR00173 menD 2-succinyl-5-en 100.0 1E-70 2.2E-75 580.1 30.1 411 29-453 2-431 (432)
58 COG3960 Glyoxylate carboligase 100.0 3E-69 6.5E-74 510.6 24.3 497 24-540 1-531 (592)
59 COG3962 Acetolactate synthase 100.0 8E-65 1.7E-69 498.6 32.9 505 25-540 5-554 (617)
60 COG1165 MenD 2-succinyl-6-hydr 100.0 1.8E-54 4E-59 439.9 26.1 489 25-540 6-525 (566)
61 cd07039 TPP_PYR_POX Pyrimidine 100.0 1.3E-41 2.9E-46 309.8 18.3 161 28-196 1-162 (164)
62 cd07038 TPP_PYR_PDC_IPDC_like 100.0 6.8E-40 1.5E-44 298.2 19.0 162 31-192 1-162 (162)
63 cd07037 TPP_PYR_MenD Pyrimidin 100.0 1.2E-39 2.7E-44 294.3 16.4 154 31-192 1-162 (162)
64 PF02776 TPP_enzyme_N: Thiamin 100.0 2E-38 4.2E-43 292.7 14.4 164 27-197 1-166 (172)
65 TIGR03336 IOR_alpha indolepyru 100.0 4.6E-32 9.9E-37 295.8 38.2 462 26-539 4-505 (595)
66 TIGR03297 Ppyr-DeCO2ase phosph 100.0 8.7E-32 1.9E-36 273.3 27.5 306 41-541 1-316 (361)
67 cd07035 TPP_PYR_POX_like Pyrim 100.0 1.1E-32 2.3E-37 250.5 17.3 153 31-192 1-155 (155)
68 cd02006 TPP_Gcl Thiamine pyrop 100.0 1.2E-31 2.6E-36 253.8 13.7 148 388-540 5-169 (202)
69 cd02013 TPP_Xsc_like Thiamine 100.0 2.5E-31 5.3E-36 250.2 14.0 147 389-540 2-155 (196)
70 cd07034 TPP_PYR_PFOR_IOR-alpha 100.0 2.9E-30 6.2E-35 235.7 17.3 154 29-190 1-158 (160)
71 cd02010 TPP_ALS Thiamine pyrop 100.0 5.1E-30 1.1E-34 237.1 12.8 143 393-540 1-149 (177)
72 cd02015 TPP_AHAS Thiamine pyro 100.0 1.9E-29 4.2E-34 235.8 13.3 145 391-540 1-153 (186)
73 cd06586 TPP_enzyme_PYR Pyrimid 100.0 1.2E-28 2.6E-33 223.7 17.2 154 31-192 1-154 (154)
74 cd02005 TPP_PDC_IPDC Thiamine 100.0 2.6E-29 5.6E-34 233.7 12.6 150 390-540 1-152 (183)
75 cd02003 TPP_IolD Thiamine pyro 100.0 4.8E-29 1E-33 236.3 12.4 142 394-540 2-163 (205)
76 cd02009 TPP_SHCHC_synthase Thi 100.0 3.5E-29 7.6E-34 231.3 10.1 143 392-540 2-154 (175)
77 cd02014 TPP_POX Thiamine pyrop 100.0 5.2E-28 1.1E-32 224.4 13.1 146 390-540 1-152 (178)
78 cd02004 TPP_BZL_OCoD_HPCL Thia 100.0 4.1E-28 8.9E-33 224.1 12.2 143 393-540 1-151 (172)
79 PRK06163 hypothetical protein; 99.9 6.4E-27 1.4E-31 219.3 13.3 139 389-540 11-152 (202)
80 cd02002 TPP_BFDC Thiamine pyro 99.9 4.9E-27 1.1E-31 218.3 12.4 144 391-540 1-158 (178)
81 TIGR03845 sulfopyru_alph sulfo 99.9 2.9E-26 6.4E-31 206.3 14.6 152 31-194 2-156 (157)
82 cd02001 TPP_ComE_PpyrDC Thiami 99.9 3.3E-26 7.1E-31 207.0 11.6 132 394-540 2-134 (157)
83 cd02008 TPP_IOR_alpha Thiamine 99.9 2E-25 4.3E-30 207.0 12.8 142 387-540 6-153 (178)
84 PF02775 TPP_enzyme_C: Thiamin 99.9 7.1E-26 1.5E-30 205.0 8.3 123 413-540 1-135 (153)
85 TIGR03846 sulfopy_beta sulfopy 99.9 2.8E-25 6E-30 205.5 12.0 133 394-540 2-136 (181)
86 cd03371 TPP_PpyrDC Thiamine py 99.9 3.1E-25 6.7E-30 206.6 11.9 136 394-540 2-142 (188)
87 PF00205 TPP_enzyme_M: Thiamin 99.9 1.4E-24 2.9E-29 192.8 12.1 132 225-358 1-137 (137)
88 cd03372 TPP_ComE Thiamine pyro 99.9 6.7E-24 1.5E-28 196.4 11.8 133 394-540 2-136 (179)
89 cd03376 TPP_PFOR_porB_like Thi 99.9 4.3E-24 9.4E-29 205.6 10.3 149 388-540 8-179 (235)
90 cd03375 TPP_OGFOR Thiamine pyr 99.9 6.3E-24 1.4E-28 199.0 11.2 136 395-540 13-163 (193)
91 cd00568 TPP_enzymes Thiamine p 99.9 1.1E-23 2.4E-28 193.9 12.5 140 396-540 2-148 (168)
92 cd02018 TPP_PFOR Thiamine pyro 99.9 1.4E-23 3E-28 202.5 11.4 151 388-540 8-181 (237)
93 PRK09628 oorB 2-oxoglutarate-a 99.9 4E-22 8.6E-27 195.0 10.5 142 389-540 24-180 (277)
94 PRK11867 2-oxoglutarate ferred 99.9 1.1E-21 2.3E-26 193.3 11.3 130 387-525 19-168 (286)
95 PRK05778 2-oxoglutarate ferred 99.9 1.5E-21 3.2E-26 193.0 11.5 140 391-540 28-182 (301)
96 PRK11869 2-oxoacid ferredoxin 99.8 1.1E-20 2.4E-25 184.4 11.8 131 388-526 11-160 (280)
97 PRK11866 2-oxoacid ferredoxin 99.8 4.2E-20 9.1E-25 180.5 13.0 133 386-526 8-159 (279)
98 TIGR02177 PorB_KorB 2-oxoacid: 99.8 9.4E-20 2E-24 178.5 11.2 86 404-498 26-113 (287)
99 COG4231 Indolepyruvate ferredo 99.8 1.1E-16 2.5E-21 166.4 26.8 454 27-526 16-521 (640)
100 PRK13030 2-oxoacid ferredoxin 99.8 1.3E-15 2.8E-20 172.9 36.0 464 24-525 17-553 (1159)
101 PRK09193 indolepyruvate ferred 99.7 3.5E-15 7.5E-20 168.9 32.4 452 24-525 25-566 (1165)
102 PRK13029 2-oxoacid ferredoxin 99.7 1.6E-13 3.5E-18 155.1 32.6 457 24-525 28-580 (1186)
103 PRK00945 acetyl-CoA decarbonyl 99.5 1.2E-13 2.6E-18 124.2 9.0 129 226-360 25-166 (171)
104 TIGR00315 cdhB CO dehydrogenas 99.5 1.4E-13 3E-18 123.0 8.6 85 226-313 18-111 (162)
105 cd02012 TPP_TK Thiamine pyroph 99.5 7.1E-14 1.5E-18 137.2 6.8 96 436-540 102-205 (255)
106 TIGR03181 PDH_E1_alph_x pyruva 99.4 2.1E-13 4.5E-18 138.9 7.4 94 436-539 119-218 (341)
107 cd02000 TPP_E1_PDC_ADC_BCADC T 99.4 9E-13 1.9E-17 132.0 8.1 89 436-529 101-195 (293)
108 TIGR03182 PDH_E1_alph_y pyruva 99.3 1.7E-12 3.6E-17 130.9 7.3 87 436-527 107-199 (315)
109 CHL00149 odpA pyruvate dehydro 99.3 7.8E-12 1.7E-16 127.0 7.7 92 436-538 125-230 (341)
110 PRK05899 transketolase; Review 99.2 1.2E-11 2.7E-16 136.4 7.5 86 436-526 115-216 (624)
111 PRK11865 pyruvate ferredoxin o 99.1 2.4E-09 5.2E-14 105.6 14.3 136 387-526 20-178 (299)
112 PLN02374 pyruvate dehydrogenas 99.0 3.2E-10 7E-15 117.9 6.2 91 435-531 190-294 (433)
113 PRK11864 2-ketoisovalerate fer 99.0 5.8E-09 1.3E-13 102.9 13.2 136 388-526 21-174 (300)
114 COG4032 Predicted thiamine-pyr 99.0 4.6E-09 1E-13 88.7 10.0 165 24-196 1-167 (172)
115 PRK08659 2-oxoglutarate ferred 99.0 2.8E-08 6.1E-13 102.5 17.7 164 25-196 5-175 (376)
116 PRK09627 oorA 2-oxoglutarate-a 98.9 3E-08 6.5E-13 102.0 16.5 164 25-196 4-174 (375)
117 cd02007 TPP_DXS Thiamine pyrop 98.9 1E-09 2.2E-14 102.9 4.8 62 436-498 72-139 (195)
118 PRK07119 2-ketoisovalerate fer 98.9 4.8E-08 1E-12 100.0 17.3 162 26-196 6-175 (352)
119 TIGR03710 OAFO_sf 2-oxoacid:ac 98.8 4.8E-08 1E-12 106.3 15.6 165 24-196 193-364 (562)
120 PRK05444 1-deoxy-D-xylulose-5- 98.8 2.5E-09 5.5E-14 117.1 4.5 90 436-527 114-210 (580)
121 PRK09622 porA pyruvate flavodo 98.8 1.6E-07 3.5E-12 98.1 16.5 160 25-194 11-177 (407)
122 PRK08366 vorA 2-ketoisovalerat 98.8 1.9E-07 4.1E-12 96.5 15.9 156 26-191 5-165 (390)
123 PRK08367 porA pyruvate ferredo 98.7 3.1E-07 6.8E-12 95.1 16.0 158 26-193 6-170 (394)
124 PF01855 POR_N: Pyruvate flavo 98.7 1.5E-07 3.2E-12 90.4 11.9 151 36-195 2-157 (230)
125 COG1013 PorB Pyruvate:ferredox 98.5 1.1E-06 2.4E-11 87.2 12.1 130 389-526 19-171 (294)
126 PRK12571 1-deoxy-D-xylulose-5- 98.3 1.1E-06 2.4E-11 97.1 6.4 61 437-498 121-183 (641)
127 COG0674 PorA Pyruvate:ferredox 98.3 2.7E-05 5.8E-10 80.1 15.9 160 24-193 3-166 (365)
128 COG1880 CdhB CO dehydrogenase/ 98.2 4.4E-06 9.6E-11 72.4 8.1 122 227-362 27-168 (170)
129 PLN02790 transketolase 98.0 5.7E-06 1.2E-10 91.7 4.1 86 436-526 102-203 (654)
130 cd02011 TPP_PK Thiamine pyroph 97.9 3.9E-05 8.5E-10 72.7 8.7 86 437-527 60-152 (227)
131 PRK12754 transketolase; Review 97.9 8.4E-06 1.8E-10 89.9 4.3 93 436-533 111-220 (663)
132 TIGR00232 tktlase_bact transke 97.9 8.2E-06 1.8E-10 90.5 4.1 86 436-526 107-208 (653)
133 PTZ00089 transketolase; Provis 97.9 9.2E-06 2E-10 90.2 4.3 87 436-527 113-215 (661)
134 PRK12315 1-deoxy-D-xylulose-5- 97.9 1.2E-05 2.7E-10 88.0 4.5 96 437-534 111-219 (581)
135 PRK12753 transketolase; Review 97.8 1E-05 2.2E-10 89.7 3.8 62 437-498 112-189 (663)
136 TIGR02176 pyruv_ox_red pyruvat 97.8 0.00077 1.7E-08 79.3 17.6 157 25-191 2-168 (1165)
137 PF00676 E1_dh: Dehydrogenase 97.7 4.5E-05 9.8E-10 76.5 5.1 87 437-531 99-194 (300)
138 COG1071 AcoA Pyruvate/2-oxoglu 97.5 0.00015 3.3E-09 73.1 5.5 92 436-533 133-232 (358)
139 cd02017 TPP_E1_EcPDC_like Thia 97.5 0.00039 8.4E-09 70.9 8.4 84 437-525 116-214 (386)
140 PF00456 Transketolase_N: Tran 97.4 1.7E-05 3.8E-10 80.2 -1.6 85 436-525 108-208 (332)
141 PF02552 CO_dh: CO dehydrogena 97.4 0.00021 4.5E-09 64.5 4.7 127 224-360 23-165 (167)
142 cd02016 TPP_E1_OGDC_like Thiam 97.3 0.00011 2.3E-09 71.6 1.9 96 435-535 109-219 (265)
143 COG3959 Transketolase, N-termi 97.3 0.00023 5E-09 66.0 3.6 91 437-532 117-214 (243)
144 PF13292 DXP_synthase_N: 1-deo 97.3 0.00048 1E-08 66.1 5.7 107 391-498 44-175 (270)
145 PLN02269 Pyruvate dehydrogenas 97.2 0.00038 8.3E-09 71.4 5.2 62 436-498 135-202 (362)
146 cd03377 TPP_PFOR_PNO Thiamine 97.1 0.0095 2E-07 60.4 13.8 69 458-526 152-233 (365)
147 TIGR00204 dxs 1-deoxy-D-xylulo 97.1 0.00092 2E-08 73.9 6.6 62 436-498 108-175 (617)
148 TIGR03186 AKGDH_not_PDH alpha- 97.0 0.0017 3.7E-08 73.1 8.1 85 436-525 186-285 (889)
149 PLN02234 1-deoxy-D-xylulose-5- 96.9 0.00072 1.6E-08 74.1 4.1 59 436-494 174-238 (641)
150 PRK05261 putative phosphoketol 96.9 0.0013 2.8E-08 73.2 5.9 86 437-527 140-232 (785)
151 KOG0523 Transketolase [Carbohy 96.9 0.0024 5.3E-08 67.4 7.1 65 434-498 113-184 (632)
152 PLN02582 1-deoxy-D-xylulose-5- 96.6 0.0029 6.4E-08 70.0 5.8 60 436-495 141-206 (677)
153 TIGR00759 aceE pyruvate dehydr 96.5 0.011 2.3E-07 66.3 9.0 85 436-525 186-285 (885)
154 PRK09404 sucA 2-oxoglutarate d 96.3 0.0027 5.8E-08 72.3 3.0 93 438-535 313-421 (924)
155 PRK13012 2-oxoacid dehydrogena 96.1 0.027 5.9E-07 64.0 9.6 85 436-525 200-299 (896)
156 COG1154 Dxs Deoxyxylulose-5-ph 96.0 0.0096 2.1E-07 63.4 5.2 65 433-498 109-180 (627)
157 cd07033 TPP_PYR_DXS_TK_like Py 95.9 0.47 1E-05 42.7 15.5 149 29-192 3-156 (156)
158 PLN02225 1-deoxy-D-xylulose-5- 95.9 0.011 2.5E-07 65.1 5.6 108 390-498 122-253 (701)
159 KOG0225 Pyruvate dehydrogenase 95.9 0.008 1.7E-07 59.0 3.9 62 436-498 162-229 (394)
160 PRK09405 aceE pyruvate dehydro 95.8 0.04 8.7E-07 62.4 9.5 85 436-525 192-291 (891)
161 COG0021 TktA Transketolase [Ca 95.8 0.028 6E-07 60.4 7.6 63 436-498 113-191 (663)
162 COG1029 FwdB Formylmethanofura 95.7 0.046 9.9E-07 54.5 8.5 87 221-313 65-151 (429)
163 TIGR00239 2oxo_dh_E1 2-oxoglut 95.5 0.0098 2.1E-07 67.6 3.6 97 434-534 310-421 (929)
164 cd02013 TPP_Xsc_like Thiamine 95.1 0.65 1.4E-05 43.6 13.8 113 77-193 58-179 (196)
165 TIGR02176 pyruv_ox_red pyruvat 94.8 0.26 5.6E-06 58.6 12.4 69 458-526 952-1033(1165)
166 PTZ00182 3-methyl-2-oxobutanat 94.6 6.3 0.00014 40.6 21.1 163 18-195 25-208 (355)
167 PF02775 TPP_enzyme_C: Thiamin 94.6 0.11 2.5E-06 46.5 7.1 119 65-190 18-153 (153)
168 cd02006 TPP_Gcl Thiamine pyrop 94.5 0.79 1.7E-05 43.2 13.0 114 77-193 62-194 (202)
169 cd02004 TPP_BZL_OCoD_HPCL Thia 94.5 0.27 5.9E-06 45.0 9.4 110 76-193 52-172 (172)
170 smart00861 Transket_pyr Transk 94.0 1.5 3.3E-05 39.8 13.4 114 67-193 50-167 (168)
171 cd02005 TPP_PDC_IPDC Thiamine 93.9 2.3 5.1E-05 39.3 14.6 108 79-193 57-174 (183)
172 cd07036 TPP_PYR_E1-PDHc-beta_l 93.2 6.3 0.00014 35.9 15.7 147 29-191 3-166 (167)
173 PRK11866 2-oxoacid ferredoxin 93.1 1.6 3.5E-05 43.2 12.6 158 27-193 16-192 (279)
174 cd02761 MopB_FmdB-FwdB The Mop 92.9 0.28 6.1E-06 51.7 7.5 114 221-340 56-181 (415)
175 cd02008 TPP_IOR_alpha Thiamine 92.8 1.2 2.6E-05 41.0 10.7 110 78-190 57-174 (178)
176 TIGR00232 tktlase_bact transke 92.8 3.1 6.6E-05 46.7 15.7 116 67-193 397-515 (653)
177 cd02003 TPP_IolD Thiamine pyro 92.8 0.51 1.1E-05 44.6 8.3 146 44-194 17-185 (205)
178 cd02010 TPP_ALS Thiamine pyrop 92.7 0.78 1.7E-05 42.2 9.2 110 79-193 55-170 (177)
179 cd02015 TPP_AHAS Thiamine pyro 92.5 1.2 2.5E-05 41.4 10.3 111 77-194 55-175 (186)
180 cd02009 TPP_SHCHC_synthase Thi 92.4 3.8 8.2E-05 37.6 13.4 123 66-193 42-175 (175)
181 cd03375 TPP_OGFOR Thiamine pyr 92.4 1.8 3.9E-05 40.5 11.3 158 27-196 8-187 (193)
182 cd02001 TPP_ComE_PpyrDC Thiami 92.3 6.4 0.00014 35.4 14.4 139 42-193 14-155 (157)
183 TIGR03181 PDH_E1_alph_x pyruva 92.2 1 2.2E-05 46.2 10.2 112 76-193 130-246 (341)
184 PRK11916 electron transfer fla 92.0 0.58 1.3E-05 47.0 7.8 116 232-363 191-311 (312)
185 PLN00022 electron transfer fla 91.6 0.52 1.1E-05 48.2 7.2 112 238-364 239-354 (356)
186 PRK12754 transketolase; Review 91.5 5.4 0.00012 44.7 15.5 116 67-193 403-521 (663)
187 PF09364 XFP_N: XFP N-terminal 91.4 0.18 3.9E-06 50.8 3.5 62 437-498 138-204 (379)
188 PTZ00089 transketolase; Provis 91.0 2.5 5.4E-05 47.5 12.4 115 67-193 404-522 (661)
189 PRK03363 fixB putative electro 90.9 0.66 1.4E-05 46.6 7.1 111 238-363 197-312 (313)
190 PLN02790 transketolase 90.9 7 0.00015 43.9 15.8 116 67-194 393-513 (654)
191 PRK05778 2-oxoglutarate ferred 90.9 3.8 8.2E-05 41.1 12.4 158 27-194 27-204 (301)
192 PRK11892 pyruvate dehydrogenas 90.9 6.9 0.00015 41.8 15.0 148 24-189 139-309 (464)
193 cd00568 TPP_enzymes Thiamine p 90.7 2.1 4.6E-05 38.6 9.8 107 77-191 51-167 (168)
194 PRK09212 pyruvate dehydrogenas 90.7 21 0.00046 36.3 18.6 154 25-193 2-175 (327)
195 cd02014 TPP_POX Thiamine pyrop 90.4 14 0.00031 33.8 15.2 112 77-193 56-173 (178)
196 CHL00144 odpB pyruvate dehydro 90.1 9.9 0.00022 38.7 14.9 154 25-193 2-175 (327)
197 PRK12753 transketolase; Review 89.9 6.3 0.00014 44.3 14.3 116 67-193 403-521 (663)
198 TIGR01504 glyox_carbo_lig glyo 89.7 4.1 8.8E-05 45.2 12.6 115 77-194 423-556 (588)
199 PRK13012 2-oxoacid dehydrogena 89.5 14 0.00029 42.8 16.6 175 68-266 576-762 (896)
200 PRK05261 putative phosphoketol 89.5 22 0.00048 40.4 17.9 116 65-193 449-581 (785)
201 cd02002 TPP_BFDC Thiamine pyro 89.1 7.3 0.00016 35.6 12.1 140 45-191 20-177 (178)
202 PRK06163 hypothetical protein; 88.8 21 0.00045 33.6 16.8 157 25-193 11-173 (202)
203 cd02000 TPP_E1_PDC_ADC_BCADC T 88.5 2.7 5.8E-05 42.1 9.3 100 90-195 126-230 (293)
204 PRK09444 pntB pyridine nucleot 88.5 0.34 7.3E-06 50.4 2.8 39 225-263 296-334 (462)
205 TIGR03182 PDH_E1_alph_y pyruva 88.3 3 6.5E-05 42.2 9.6 99 90-194 132-235 (315)
206 PRK09628 oorB 2-oxoglutarate-a 88.2 19 0.00041 35.7 14.9 154 29-194 27-202 (277)
207 PRK12571 1-deoxy-D-xylulose-5- 88.2 15 0.00032 41.2 15.7 150 27-193 319-479 (641)
208 PF00676 E1_dh: Dehydrogenase 88.2 2 4.3E-05 43.2 8.1 99 88-192 120-224 (300)
209 COG2025 FixB Electron transfer 87.8 2 4.3E-05 43.1 7.7 111 239-364 198-312 (313)
210 PRK07525 sulfoacetaldehyde ace 87.6 2.2 4.7E-05 47.4 8.7 113 77-193 440-562 (588)
211 PF02779 Transket_pyr: Transke 87.3 7.5 0.00016 35.7 10.9 118 67-194 49-174 (178)
212 PRK11269 glyoxylate carboligas 87.3 6.5 0.00014 43.6 12.3 116 77-193 424-556 (591)
213 TIGR03846 sulfopy_beta sulfopy 87.2 4.9 0.00011 37.1 9.6 105 78-193 48-156 (181)
214 PRK14138 NAD-dependent deacety 87.1 1 2.2E-05 43.8 5.2 68 295-362 171-241 (244)
215 PRK07979 acetolactate synthase 87.0 11 0.00023 41.8 13.7 114 77-193 426-548 (574)
216 PRK06546 pyruvate dehydrogenas 86.9 8.4 0.00018 42.6 12.9 111 78-193 414-530 (578)
217 CHL00099 ilvB acetohydroxyacid 86.9 11 0.00025 41.6 13.9 158 27-193 383-555 (585)
218 TIGR03394 indol_phenyl_DC indo 86.8 3.8 8.2E-05 44.9 10.0 107 80-193 411-521 (535)
219 cd03376 TPP_PFOR_porB_like Thi 86.7 10 0.00022 36.7 11.8 101 90-196 82-203 (235)
220 cd03371 TPP_PpyrDC Thiamine py 86.6 6.7 0.00015 36.4 10.2 107 77-194 53-164 (188)
221 PRK09107 acetolactate synthase 86.6 13 0.00028 41.4 14.1 111 77-194 435-555 (595)
222 TIGR03457 sulphoacet_xsc sulfo 86.6 8.4 0.00018 42.6 12.7 164 27-193 381-557 (579)
223 TIGR00204 dxs 1-deoxy-D-xylulo 86.5 7.5 0.00016 43.3 12.2 154 27-194 310-471 (617)
224 cd02018 TPP_PFOR Thiamine pyro 86.5 7.4 0.00016 37.6 10.8 88 104-195 103-205 (237)
225 TIGR03297 Ppyr-DeCO2ase phosph 86.4 35 0.00076 35.3 16.1 158 26-194 171-337 (361)
226 cd03372 TPP_ComE Thiamine pyro 86.3 26 0.00056 32.2 13.8 103 79-193 49-155 (179)
227 CHL00149 odpA pyruvate dehydro 86.2 5.1 0.00011 41.0 9.9 96 91-192 158-258 (341)
228 PRK09124 pyruvate dehydrogenas 86.0 16 0.00035 40.3 14.5 112 77-193 413-530 (574)
229 PRK08611 pyruvate oxidase; Pro 85.5 3.8 8.2E-05 45.3 9.2 113 77-194 413-531 (576)
230 COG0028 IlvB Thiamine pyrophos 85.4 2.8 6.2E-05 45.9 8.0 108 80-194 416-532 (550)
231 PRK08327 acetolactate synthase 85.4 3.2 7E-05 45.8 8.6 115 77-193 435-567 (569)
232 COG1282 PntB NAD/NADP transhyd 85.3 0.78 1.7E-05 46.0 3.3 78 225-312 298-393 (463)
233 PRK00481 NAD-dependent deacety 85.2 1.7 3.6E-05 42.3 5.6 68 295-362 170-240 (242)
234 PF02233 PNTB: NAD(P) transhyd 85.1 0.4 8.7E-06 50.4 1.3 78 225-312 297-392 (463)
235 PRK06882 acetolactate synthase 85.1 12 0.00027 41.2 13.1 112 77-194 426-547 (574)
236 PRK12315 1-deoxy-D-xylulose-5- 85.0 7.7 0.00017 42.9 11.3 152 26-194 277-438 (581)
237 PRK06154 hypothetical protein; 85.0 5.1 0.00011 44.2 10.0 114 77-194 436-556 (565)
238 PRK08527 acetolactate synthase 84.9 18 0.00038 39.9 14.1 113 77-194 419-539 (563)
239 PRK05858 hypothetical protein; 84.8 3.2 6.9E-05 45.5 8.2 110 78-193 413-530 (542)
240 PRK11869 2-oxoacid ferredoxin 84.7 16 0.00035 36.3 12.2 156 28-193 18-193 (280)
241 PLN02374 pyruvate dehydrogenas 84.5 6.9 0.00015 41.4 10.1 96 91-192 224-324 (433)
242 PRK05444 1-deoxy-D-xylulose-5- 84.4 9.7 0.00021 42.2 11.8 152 27-194 279-440 (580)
243 TIGR03186 AKGDH_not_PDH alpha- 84.2 16 0.00036 42.0 13.5 179 68-265 563-753 (889)
244 PLN02573 pyruvate decarboxylas 84.2 6.2 0.00013 43.6 10.2 112 77-193 433-552 (578)
245 PRK08617 acetolactate synthase 84.2 16 0.00034 40.2 13.4 109 80-193 422-536 (552)
246 TIGR03129 one_C_dehyd_B formyl 83.9 2.9 6.2E-05 44.1 7.2 113 221-340 62-187 (421)
247 TIGR02418 acolac_catab acetola 83.9 9.7 0.00021 41.7 11.5 112 77-193 413-530 (539)
248 PRK06466 acetolactate synthase 83.8 18 0.00039 39.9 13.7 114 77-194 428-549 (574)
249 PRK06725 acetolactate synthase 83.8 17 0.00037 40.1 13.4 110 77-193 427-545 (570)
250 TIGR03336 IOR_alpha indolepyru 83.7 6.8 0.00015 43.5 10.3 115 78-195 409-532 (595)
251 PLN02470 acetolactate synthase 83.5 32 0.00069 38.1 15.4 114 76-194 430-558 (585)
252 PRK05899 transketolase; Review 83.3 13 0.00029 41.5 12.4 116 67-193 368-486 (624)
253 PRK07586 hypothetical protein; 83.3 8.7 0.00019 41.8 10.8 143 43-191 353-513 (514)
254 TIGR02720 pyruv_oxi_spxB pyruv 83.2 7.7 0.00017 42.9 10.4 113 77-194 413-533 (575)
255 PRK08322 acetolactate synthase 83.2 22 0.00049 38.9 14.0 110 77-193 411-528 (547)
256 PRK07418 acetolactate synthase 82.5 13 0.00029 41.4 12.0 152 33-193 392-559 (616)
257 COG1071 AcoA Pyruvate/2-oxoglu 82.4 12 0.00026 38.3 10.4 121 66-191 134-259 (358)
258 PRK11867 2-oxoglutarate ferred 82.4 9.3 0.0002 38.1 9.6 160 28-195 27-204 (286)
259 COG3957 Phosphoketolase [Carbo 82.3 1.1 2.4E-05 48.9 3.1 84 437-525 151-241 (793)
260 PLN02582 1-deoxy-D-xylulose-5- 82.1 16 0.00034 41.1 12.2 151 27-194 356-517 (677)
261 TIGR00118 acolac_lg acetolacta 81.9 25 0.00055 38.7 13.8 111 77-194 417-537 (558)
262 PRK08978 acetolactate synthase 81.9 32 0.00069 37.8 14.6 113 77-194 406-526 (548)
263 PRK06456 acetolactate synthase 81.7 4.6 0.0001 44.6 8.0 109 79-194 428-546 (572)
264 KOG1182 Branched chain alpha-k 81.6 2.1 4.6E-05 42.1 4.5 60 438-498 192-258 (432)
265 PRK07789 acetolactate synthase 81.6 20 0.00044 39.9 13.0 158 33-194 403-577 (612)
266 PRK06965 acetolactate synthase 81.6 25 0.00053 39.0 13.7 112 76-193 441-562 (587)
267 PRK08979 acetolactate synthase 81.5 31 0.00067 38.1 14.3 114 77-194 426-547 (572)
268 TIGR02177 PorB_KorB 2-oxoacid: 81.3 12 0.00026 37.3 9.8 154 29-194 12-187 (287)
269 PRK07524 hypothetical protein; 80.9 26 0.00055 38.4 13.4 113 77-195 412-531 (535)
270 PTZ00408 NAD-dependent deacety 80.8 3.1 6.7E-05 40.4 5.5 68 295-362 165-235 (242)
271 PRK07710 acetolactate synthase 80.7 37 0.0008 37.5 14.6 112 77-194 429-549 (571)
272 PRK07064 hypothetical protein; 80.6 8.4 0.00018 42.2 9.5 110 79-193 412-528 (544)
273 PRK07449 2-succinyl-5-enolpyru 80.5 20 0.00042 39.6 12.4 122 66-193 416-549 (568)
274 cd01408 SIRT1 SIRT1: Eukaryoti 80.1 2.1 4.6E-05 41.3 4.1 64 295-358 168-235 (235)
275 PRK08155 acetolactate synthase 80.1 41 0.00088 37.1 14.7 122 66-194 410-544 (564)
276 PRK06112 acetolactate synthase 79.9 15 0.00033 40.6 11.3 138 50-193 411-560 (578)
277 cd02768 MopB_NADH-Q-OR-NuoG2 M 79.6 5.8 0.00012 41.3 7.5 112 221-338 71-189 (386)
278 cd02750 MopB_Nitrate-R-NarG-li 79.2 4.1 8.8E-05 43.7 6.3 116 221-340 87-212 (461)
279 PF00766 ETF_alpha: Electron t 78.9 2.2 4.9E-05 33.9 3.1 63 238-312 9-73 (86)
280 TIGR03254 oxalate_oxc oxalyl-C 78.8 11 0.00023 41.5 9.6 112 77-193 422-538 (554)
281 cd07035 TPP_PYR_POX_like Pyrim 78.3 7.2 0.00016 34.7 6.8 84 444-539 46-129 (155)
282 PRK08199 thiamine pyrophosphat 77.8 8 0.00017 42.6 8.2 110 78-193 421-538 (557)
283 PRK08266 hypothetical protein; 77.5 13 0.00028 40.8 9.7 111 79-194 409-526 (542)
284 cd02752 MopB_Formate-Dh-Na-lik 77.5 2.4 5.1E-05 47.4 3.9 115 221-340 73-212 (649)
285 TIGR03393 indolpyr_decarb indo 77.0 15 0.00032 40.3 9.9 108 80-193 412-527 (539)
286 PRK05333 NAD-dependent deacety 76.5 4.6 0.0001 40.3 5.4 69 295-363 207-278 (285)
287 PRK07092 benzoylformate decarb 76.5 16 0.00036 39.8 10.2 109 77-193 412-530 (530)
288 PRK06276 acetolactate synthase 76.5 1E+02 0.0022 34.2 16.5 112 77-193 424-543 (586)
289 cd01412 SIRT5_Af1_CobB SIRT5_A 75.8 4.2 9.2E-05 38.9 4.8 63 296-358 158-223 (224)
290 PLN02683 pyruvate dehydrogenas 75.8 93 0.002 32.1 14.8 153 25-191 25-196 (356)
291 PLN02234 1-deoxy-D-xylulose-5- 75.6 88 0.0019 35.0 15.3 152 26-194 356-518 (641)
292 PRK06048 acetolactate synthase 75.2 48 0.001 36.5 13.5 124 66-194 405-539 (561)
293 PRK08273 thiamine pyrophosphat 74.4 64 0.0014 35.8 14.3 154 33-193 371-546 (597)
294 PRK09259 putative oxalyl-CoA d 73.7 10 0.00022 41.9 7.7 113 77-194 429-547 (569)
295 cd02773 MopB_Res-Cmplx1_Nad11 72.9 11 0.00024 39.0 7.5 110 221-338 70-186 (375)
296 cd00368 Molybdopterin-Binding 72.8 2.7 5.9E-05 43.4 2.8 116 221-340 73-198 (374)
297 PRK12474 hypothetical protein; 72.8 17 0.00037 39.6 9.1 108 78-191 395-517 (518)
298 cd02774 MopB_Res-Cmplx1_Nad11- 72.8 22 0.00048 36.8 9.4 113 221-340 71-190 (366)
299 PRK11865 pyruvate ferredoxin o 72.2 45 0.00097 33.5 11.0 157 29-192 29-210 (299)
300 COG2247 LytB Putative cell wal 72.2 9.9 0.00022 37.8 6.2 43 254-313 43-86 (337)
301 TIGR01973 NuoG NADH-quinone ox 72.2 9.2 0.0002 42.6 6.9 114 220-340 287-405 (603)
302 TIGR03479 DMSO_red_II_alp DMSO 72.0 10 0.00022 44.5 7.5 116 221-340 141-266 (912)
303 TIGR00853 pts-lac PTS system, 71.6 6 0.00013 32.3 4.0 33 235-267 3-35 (95)
304 PRK10886 DnaA initiator-associ 70.9 30 0.00066 32.3 9.0 101 27-128 28-149 (196)
305 cd02012 TPP_TK Thiamine pyroph 70.1 44 0.00095 32.6 10.5 94 92-194 129-228 (255)
306 COG3958 Transketolase, C-termi 70.0 58 0.0013 32.3 10.8 155 27-193 7-168 (312)
307 cd01413 SIR2_Af2 SIR2_Af2: Arc 70.0 4.2 9.2E-05 38.9 3.2 46 295-340 164-211 (222)
308 cd01410 SIRT7 SIRT7: Eukaryoti 69.8 4.2 9E-05 38.5 3.1 46 295-340 148-195 (206)
309 cd02772 MopB_NDH-1_NuoG2 MopB_ 69.3 11 0.00025 39.6 6.6 112 221-338 71-192 (414)
310 PTZ00409 Sir2 (Silent Informat 69.2 4.6 9.9E-05 39.9 3.3 46 295-340 192-239 (271)
311 PLN02225 1-deoxy-D-xylulose-5- 69.2 1.4E+02 0.003 33.8 14.9 155 26-194 380-542 (701)
312 PLN02269 Pyruvate dehydrogenas 68.9 36 0.00078 35.2 9.9 117 67-191 137-257 (362)
313 PRK06457 pyruvate dehydrogenas 68.9 98 0.0021 34.0 14.0 109 80-193 404-519 (549)
314 cd01409 SIRT4 SIRT4: Eukaryoti 68.4 5.2 0.00011 39.3 3.5 47 295-341 197-245 (260)
315 TIGR01591 Fdh-alpha formate de 68.2 8.6 0.00019 43.4 5.7 115 221-340 70-197 (671)
316 cd02767 MopB_ydeP The MopB_yde 68.0 9 0.0002 42.3 5.6 114 220-338 82-203 (574)
317 PRK11864 2-ketoisovalerate fer 67.6 47 0.001 33.3 10.1 124 65-191 63-205 (300)
318 cd01411 SIR2H SIR2H: Uncharact 67.4 4.8 0.0001 38.6 3.0 46 296-341 165-211 (225)
319 PRK00414 gmhA phosphoheptose i 66.6 52 0.0011 30.6 9.7 101 27-128 31-151 (192)
320 cd05564 PTS_IIB_chitobiose_lic 65.7 10 0.00022 30.9 4.2 30 237-266 1-30 (96)
321 PLN02980 2-oxoglutarate decarb 65.5 22 0.00048 44.5 8.9 112 78-194 767-890 (1655)
322 COG1029 FwdB Formylmethanofura 65.0 14 0.00031 37.3 5.7 111 222-338 232-370 (429)
323 cd02007 TPP_DXS Thiamine pyrop 64.9 58 0.0012 30.4 9.7 87 91-191 98-188 (195)
324 PRK13936 phosphoheptose isomer 64.7 66 0.0014 30.0 10.1 101 28-128 31-151 (197)
325 PF02603 Hpr_kinase_N: HPr Ser 62.5 7.5 0.00016 33.6 3.0 48 222-272 67-114 (127)
326 PF02776 TPP_enzyme_N: Thiamin 61.6 50 0.0011 29.9 8.5 96 429-540 39-136 (172)
327 TIGR00300 conserved hypothetic 60.6 9.6 0.00021 39.0 3.7 101 255-363 296-405 (407)
328 cd05565 PTS_IIB_lactose PTS_II 60.5 14 0.0003 30.5 4.0 31 237-267 2-32 (99)
329 PRK09405 aceE pyruvate dehydro 60.0 2.3E+02 0.005 33.0 14.9 174 68-265 568-756 (891)
330 TIGR01701 Fdhalpha-like oxidor 59.8 15 0.00032 42.0 5.6 113 221-338 118-238 (743)
331 cd02753 MopB_Formate-Dh-H Form 59.7 16 0.00034 39.7 5.7 115 221-340 71-198 (512)
332 cd06586 TPP_enzyme_PYR Pyrimid 59.5 34 0.00073 30.0 6.9 51 444-496 47-98 (154)
333 cd01407 SIR2-fam SIR2 family o 59.2 7.4 0.00016 37.1 2.6 46 295-340 160-207 (218)
334 PRK09130 NADH dehydrogenase su 58.9 25 0.00054 39.8 7.1 110 220-337 288-404 (687)
335 TIGR00441 gmhA phosphoheptose 56.9 1.1E+02 0.0023 27.2 9.6 98 31-128 2-119 (154)
336 cd02766 MopB_3 The MopB_3 CD i 56.9 9 0.00019 41.6 3.1 115 221-340 75-199 (501)
337 COG2609 AceE Pyruvate dehydrog 56.3 33 0.00071 38.0 6.9 58 437-494 190-260 (887)
338 PRK09939 putative oxidoreducta 56.0 10 0.00022 43.2 3.5 115 220-338 126-248 (759)
339 PRK13937 phosphoheptose isomer 56.0 93 0.002 28.7 9.4 102 27-128 25-146 (188)
340 PRK07119 2-ketoisovalerate fer 55.7 19 0.00041 37.1 5.1 49 444-494 60-108 (352)
341 PRK13761 hypothetical protein; 55.2 26 0.00057 33.1 5.3 48 221-269 53-100 (248)
342 PF02302 PTS_IIB: PTS system, 55.0 12 0.00026 29.7 2.9 32 237-268 1-33 (90)
343 cd05569 PTS_IIB_fructose PTS_I 55.0 52 0.0011 26.8 6.6 77 239-336 4-81 (96)
344 TIGR02717 AcCoA-syn-alpha acet 54.9 2.3E+02 0.0049 30.3 13.3 43 226-271 391-434 (447)
345 COG0552 FtsY Signal recognitio 54.7 23 0.0005 35.8 5.2 49 221-269 152-200 (340)
346 TIGR03845 sulfopyru_alph sulfo 53.5 28 0.00061 31.2 5.3 55 442-498 44-99 (157)
347 cd02761 MopB_FmdB-FwdB The Mop 53.4 76 0.0016 33.2 9.4 42 222-263 222-267 (415)
348 PRK09860 putative alcohol dehy 53.2 40 0.00087 35.1 7.1 76 224-311 18-97 (383)
349 TIGR01553 formate-DH-alph form 51.5 17 0.00038 42.9 4.5 115 221-339 125-262 (1009)
350 PRK09129 NADH dehydrogenase su 51.3 34 0.00074 39.4 6.8 115 220-340 288-412 (776)
351 COG0846 SIR2 NAD-dependent pro 51.2 22 0.00048 34.6 4.5 66 295-362 175-245 (250)
352 PRK07282 acetolactate synthase 50.8 2.8E+02 0.006 30.6 13.6 109 77-193 423-541 (566)
353 cd00368 Molybdopterin-Binding 50.7 74 0.0016 32.6 8.7 87 222-316 230-320 (374)
354 PF01855 POR_N: Pyruvate flavo 50.6 19 0.00041 34.7 3.8 49 444-494 48-96 (230)
355 PRK13938 phosphoheptose isomer 49.5 1.1E+02 0.0023 28.7 8.6 101 27-128 32-153 (196)
356 PF07894 DUF1669: Protein of u 49.4 42 0.0009 33.2 6.0 71 457-544 146-218 (284)
357 cd08193 HVD 5-hydroxyvalerate 48.7 64 0.0014 33.5 7.8 77 224-312 13-93 (376)
358 TIGR00274 N-acetylmuramic acid 48.3 71 0.0015 31.9 7.6 100 28-128 45-166 (291)
359 cd08194 Fe-ADH6 Iron-containin 47.8 57 0.0012 33.9 7.2 76 224-311 10-89 (375)
360 COG0541 Ffh Signal recognition 47.5 38 0.00083 35.5 5.6 48 222-269 114-161 (451)
361 PRK09330 cell division protein 47.3 39 0.00085 35.1 5.8 79 221-310 84-167 (384)
362 KOG1905 Class IV sirtuins (SIR 45.6 66 0.0014 31.8 6.6 70 295-364 209-281 (353)
363 COG1454 EutG Alcohol dehydroge 45.2 69 0.0015 33.3 7.1 76 224-312 16-96 (377)
364 cd08185 Fe-ADH1 Iron-containin 45.1 60 0.0013 33.8 6.9 76 224-311 13-92 (380)
365 cd02016 TPP_E1_OGDC_like Thiam 44.7 1.7E+02 0.0036 28.9 9.4 96 90-191 140-244 (265)
366 cd07039 TPP_PYR_POX Pyrimidine 44.5 90 0.0019 28.1 7.1 81 446-539 52-133 (164)
367 PRK13982 bifunctional SbtC-lik 44.4 91 0.002 33.5 8.1 90 391-491 233-340 (475)
368 cd08176 LPO Lactadehyde:propan 44.1 64 0.0014 33.5 6.9 76 224-311 15-94 (377)
369 TIGR02638 lactal_redase lactal 44.0 63 0.0014 33.6 6.9 75 225-311 17-95 (379)
370 PRK13398 3-deoxy-7-phosphohept 44.0 96 0.0021 30.5 7.7 52 221-272 39-100 (266)
371 COG2204 AtoC Response regulato 43.9 2.6E+02 0.0055 30.0 11.2 132 100-268 62-197 (464)
372 cd02774 MopB_Res-Cmplx1_Nad11- 43.7 26 0.00057 36.3 3.9 38 227-264 213-254 (366)
373 cd08190 HOT Hydroxyacid-oxoaci 43.6 69 0.0015 33.8 7.2 76 225-312 11-90 (414)
374 PRK15454 ethanol dehydrogenase 43.6 69 0.0015 33.6 7.1 43 225-267 37-81 (395)
375 PRK08366 vorA 2-ketoisovalerat 43.6 40 0.00086 35.2 5.2 46 444-491 61-106 (390)
376 PF13580 SIS_2: SIS domain; PD 43.3 1.3E+02 0.0028 26.2 7.7 95 27-123 22-138 (138)
377 PF00465 Fe-ADH: Iron-containi 43.2 20 0.00042 37.1 2.9 76 225-312 11-88 (366)
378 cd02201 FtsZ_type1 FtsZ is a G 42.9 59 0.0013 32.7 6.3 47 222-268 72-119 (304)
379 COG1701 Uncharacterized protei 42.9 54 0.0012 30.7 5.2 48 221-269 55-102 (256)
380 TIGR00065 ftsZ cell division p 42.4 61 0.0013 33.3 6.3 81 222-310 89-171 (349)
381 cd08181 PPD-like 1,3-propanedi 42.3 75 0.0016 32.7 7.0 76 225-312 14-93 (357)
382 PRK07860 NADH dehydrogenase su 42.3 43 0.00094 38.6 5.8 113 220-338 295-417 (797)
383 PTZ00410 NAD-dependent SIR2; P 42.3 22 0.00048 36.3 3.0 43 296-338 199-242 (349)
384 cd02754 MopB_Nitrate-R-NapA-li 41.9 24 0.00051 38.9 3.5 118 220-339 71-200 (565)
385 cd08192 Fe-ADH7 Iron-containin 41.8 73 0.0016 33.0 6.9 76 224-311 11-90 (370)
386 cd08178 AAD_C C-terminal alcoh 41.6 75 0.0016 33.3 7.0 74 226-311 12-87 (398)
387 cd00296 SIR2 SIR2 superfamily 41.4 21 0.00046 33.9 2.7 45 296-340 163-209 (222)
388 cd02751 MopB_DMSOR-like The Mo 41.2 46 0.001 37.1 5.7 119 221-340 78-219 (609)
389 cd05007 SIS_Etherase N-acetylm 41.1 1.5E+02 0.0032 29.0 8.6 102 27-128 36-158 (257)
390 cd08189 Fe-ADH5 Iron-containin 41.0 77 0.0017 32.9 7.0 75 225-311 14-92 (374)
391 PRK08659 2-oxoglutarate ferred 40.8 49 0.0011 34.4 5.4 50 444-495 60-109 (376)
392 cd08188 Fe-ADH4 Iron-containin 40.3 80 0.0017 32.8 7.0 76 224-311 15-94 (377)
393 COG0794 GutQ Predicted sugar p 40.3 1.2E+02 0.0026 28.5 7.2 37 92-128 89-126 (202)
394 PRK10624 L-1,2-propanediol oxi 40.0 80 0.0017 32.9 6.9 76 224-311 17-96 (382)
395 PF09936 Methyltrn_RNA_4: SAM- 39.2 80 0.0017 29.0 5.7 64 225-307 90-157 (185)
396 PF00448 SRP54: SRP54-type pro 38.6 50 0.0011 30.8 4.6 47 223-269 16-62 (196)
397 cd01460 vWA_midasin VWA_Midasi 37.9 3.2E+02 0.0069 26.9 10.2 77 459-540 166-248 (266)
398 COG2006 Uncharacterized conser 37.9 3.9E+02 0.0085 26.4 10.4 125 160-310 8-142 (293)
399 cd08191 HHD 6-hydroxyhexanoate 37.8 1.2E+02 0.0026 31.6 7.9 43 225-267 11-54 (386)
400 PRK12270 kgd alpha-ketoglutara 37.7 60 0.0013 37.7 5.6 68 459-531 649-722 (1228)
401 cd08663 DAP_dppA_1 Peptidase M 37.0 27 0.0006 34.2 2.6 140 30-180 39-204 (266)
402 PRK05333 NAD-dependent deacety 36.6 30 0.00065 34.5 3.0 29 220-248 4-32 (285)
403 cd08170 GlyDH Glycerol dehydro 35.8 96 0.0021 31.8 6.7 41 225-266 11-52 (351)
404 cd08187 BDH Butanol dehydrogen 35.5 93 0.002 32.4 6.6 72 226-311 18-95 (382)
405 cd08551 Fe-ADH iron-containing 35.5 1.2E+02 0.0026 31.4 7.3 77 224-312 10-90 (370)
406 COG3925 N-terminal domain of t 35.5 42 0.00092 27.0 2.9 32 301-338 39-70 (103)
407 COG0054 RibH Riboflavin syntha 35.4 2E+02 0.0043 25.7 7.4 55 34-88 35-104 (152)
408 KOG0081 GTPase Rab27, small G 35.2 50 0.0011 29.6 3.6 40 235-274 122-166 (219)
409 PF07085 DRTGG: DRTGG domain; 34.7 38 0.00081 27.9 2.8 36 232-271 58-93 (105)
410 KOG3954 Electron transfer flav 34.4 1.1E+02 0.0023 29.9 5.9 120 229-364 204-335 (336)
411 cd05006 SIS_GmhA Phosphoheptos 34.4 3E+02 0.0064 24.9 9.1 35 94-128 106-141 (177)
412 cd08175 G1PDH Glycerol-1-phosp 34.3 1.1E+02 0.0025 31.2 6.9 77 225-311 11-89 (348)
413 PF12804 NTP_transf_3: MobA-li 34.3 3.2E+02 0.0068 23.8 10.9 98 24-124 21-124 (160)
414 COG3142 CutC Uncharacterized p 34.2 67 0.0014 30.6 4.6 42 221-266 154-196 (241)
415 PRK02399 hypothetical protein; 34.1 5.8E+02 0.012 26.8 12.9 181 26-248 197-387 (406)
416 PTZ00254 40S ribosomal protein 34.0 1.1E+02 0.0024 29.8 6.1 75 223-316 56-132 (249)
417 PRK09590 celB cellobiose phosp 34.0 35 0.00077 28.3 2.5 32 236-267 2-33 (104)
418 cd08769 DAP_dppA_2 Peptidase M 33.9 10 0.00022 37.3 -0.9 143 29-181 38-205 (270)
419 COG1440 CelA Phosphotransferas 33.8 84 0.0018 25.9 4.5 56 236-312 2-57 (102)
420 TIGR03012 sulf_tusD_dsrE sulfu 33.7 1.3E+02 0.0029 25.8 6.1 86 222-309 17-127 (127)
421 cd07034 TPP_PYR_PFOR_IOR-alpha 33.5 1E+02 0.0023 27.3 5.8 53 443-497 52-104 (160)
422 cd08186 Fe-ADH8 Iron-containin 33.4 1.5E+02 0.0032 30.9 7.7 75 225-311 11-93 (383)
423 cd08182 HEPD Hydroxyethylphosp 32.9 1.5E+02 0.0033 30.5 7.6 72 225-311 11-86 (367)
424 PF13380 CoA_binding_2: CoA bi 32.8 65 0.0014 27.2 4.0 42 28-70 66-107 (116)
425 cd02771 MopB_NDH-1_NuoG2-N7 Mo 32.6 80 0.0017 33.8 5.7 87 221-315 71-158 (472)
426 PRK12570 N-acetylmuramic acid- 32.6 2.4E+02 0.0053 28.2 8.7 102 27-128 45-167 (296)
427 cd02759 MopB_Acetylene-hydrata 32.4 47 0.001 35.7 3.8 115 222-339 76-202 (477)
428 PRK10427 putative PTS system f 32.3 1.3E+02 0.0028 25.4 5.6 83 250-362 20-103 (114)
429 cd02772 MopB_NDH-1_NuoG2 MopB_ 31.4 48 0.001 34.8 3.7 43 222-264 238-284 (414)
430 PRK05441 murQ N-acetylmuramic 31.3 2.2E+02 0.0048 28.5 8.2 101 28-128 50-171 (299)
431 PRK00771 signal recognition pa 31.3 1.3E+02 0.0029 31.9 6.8 48 223-270 110-157 (437)
432 cd02762 MopB_1 The MopB_1 CD i 30.7 78 0.0017 34.6 5.3 114 221-340 71-204 (539)
433 cd02771 MopB_NDH-1_NuoG2-N7 Mo 30.2 75 0.0016 34.0 5.0 44 222-265 252-295 (472)
434 PRK05579 bifunctional phosphop 30.2 2.3E+02 0.0049 29.8 8.3 97 391-498 168-279 (399)
435 TIGR01012 Sa_S2_E_A ribosomal 30.1 3.3E+02 0.0072 25.4 8.5 73 223-314 47-120 (196)
436 TIGR00162 conserved hypothetic 30.0 4.1E+02 0.0088 24.6 9.1 26 27-52 33-58 (188)
437 PRK10586 putative oxidoreducta 29.8 1.7E+02 0.0037 30.2 7.3 41 224-265 21-63 (362)
438 cd06348 PBP1_ABC_ligand_bindin 29.6 1.2E+02 0.0027 30.5 6.3 56 224-282 55-110 (344)
439 cd02757 MopB_Arsenate-R This C 29.4 54 0.0012 35.8 3.7 112 221-340 81-206 (523)
440 cd02072 Glm_B12_BD B12 binding 28.8 78 0.0017 27.4 3.8 31 31-62 98-128 (128)
441 TIGR01580 narG respiratory nit 28.8 96 0.0021 37.2 5.6 116 221-340 162-287 (1235)
442 PRK11557 putative DNA-binding 28.8 1.2E+02 0.0025 29.8 5.7 69 221-309 114-182 (278)
443 PRK08367 porA pyruvate ferredo 28.6 87 0.0019 32.8 4.9 45 444-490 62-106 (394)
444 PF04273 DUF442: Putative phos 28.5 2.6E+02 0.0055 23.4 6.8 77 34-111 20-108 (110)
445 PRK09622 porA pyruvate flavodo 28.4 90 0.0019 32.9 5.0 50 444-495 68-117 (407)
446 PRK04020 rps2P 30S ribosomal p 28.4 3.7E+02 0.008 25.3 8.5 73 223-314 53-126 (204)
447 PRK08285 cobH precorrin-8X met 28.3 1.1E+02 0.0024 28.9 5.0 53 222-274 137-191 (208)
448 PF07905 PucR: Purine cataboli 28.2 1.4E+02 0.0029 25.5 5.3 49 222-270 58-106 (123)
449 TIGR01357 aroB 3-dehydroquinat 28.2 1.4E+02 0.0031 30.4 6.4 41 225-266 10-50 (344)
450 COG0021 TktA Transketolase [Ca 28.1 4.4E+02 0.0096 29.3 10.0 160 24-193 354-521 (663)
451 PF02146 SIR2: Sir2 family; I 28.1 56 0.0012 29.8 3.1 20 295-314 156-175 (178)
452 PRK10499 PTS system N,N'-diace 28.1 89 0.0019 26.0 4.0 33 236-268 4-36 (106)
453 TIGR00789 flhB_rel flhB C-term 28.0 70 0.0015 25.3 3.1 32 236-270 16-47 (82)
454 cd02770 MopB_DmsA-EC This CD ( 28.0 81 0.0018 35.2 4.9 114 222-339 81-210 (617)
455 COG3960 Glyoxylate carboligase 27.7 2.2E+02 0.0048 28.7 7.1 114 80-193 427-556 (592)
456 TIGR00679 hpr-ser Hpr(Ser) kin 27.6 1.1E+02 0.0023 30.8 5.1 46 224-272 70-115 (304)
457 cd08183 Fe-ADH2 Iron-containin 27.5 2E+02 0.0043 29.8 7.4 72 225-312 11-85 (374)
458 PF07355 GRDB: Glycine/sarcosi 27.4 1.6E+02 0.0035 30.0 6.3 50 221-270 65-118 (349)
459 PF06792 UPF0261: Uncharacteri 27.1 7.5E+02 0.016 26.0 12.8 188 25-250 195-389 (403)
460 PRK13532 nitrate reductase cat 27.1 1.3E+02 0.0028 35.0 6.5 41 299-339 203-249 (830)
461 TIGR00829 FRU PTS system, fruc 26.6 1.7E+02 0.0037 23.2 5.2 66 251-336 16-81 (85)
462 PRK15138 aldehyde reductase; P 26.6 1.3E+02 0.0028 31.4 5.8 37 224-260 18-55 (387)
463 PF04951 Peptidase_M55: D-amin 26.4 7.4 0.00016 38.2 -3.2 141 30-181 39-205 (265)
464 cd05005 SIS_PHI Hexulose-6-pho 25.9 1.1E+02 0.0025 27.7 4.7 46 221-268 19-64 (179)
465 PRK05428 HPr kinase/phosphoryl 25.8 1.2E+02 0.0026 30.5 5.0 48 222-272 68-115 (308)
466 PF06711 DUF1198: Protein of u 25.8 52 0.0011 28.7 2.1 31 238-268 11-41 (148)
467 COG1419 FlhF Flagellar GTP-bin 25.7 1.4E+02 0.0031 31.2 5.7 56 234-308 232-287 (407)
468 cd05013 SIS_RpiR RpiR-like pro 25.4 1.2E+02 0.0027 25.5 4.7 43 224-268 2-44 (139)
469 TIGR03405 Phn_Fe-ADH phosphona 25.3 1.4E+02 0.0031 30.6 5.8 35 225-260 14-48 (355)
470 PF00455 DeoRC: DeoR C termina 25.1 3.3E+02 0.0072 24.3 7.5 86 394-489 7-98 (161)
471 PRK09130 NADH dehydrogenase su 25.1 84 0.0018 35.6 4.3 38 226-263 428-469 (687)
472 TIGR00521 coaBC_dfp phosphopan 24.9 2.9E+02 0.0063 28.9 7.9 98 390-498 163-277 (390)
473 cd06259 YdcF-like YdcF-like. Y 24.9 1.9E+02 0.0041 25.2 5.9 46 221-266 19-67 (150)
474 TIGR03710 OAFO_sf 2-oxoacid:ac 24.8 94 0.002 34.3 4.5 51 444-496 249-299 (562)
475 COG1915 Uncharacterized conser 24.5 26 0.00057 34.6 0.1 99 259-364 299-405 (415)
476 COG0777 AccD Acetyl-CoA carbox 24.3 3E+02 0.0065 27.1 7.2 63 436-498 129-210 (294)
477 TIGR00644 recJ single-stranded 24.1 3E+02 0.0065 30.2 8.3 85 221-316 40-125 (539)
478 PRK09627 oorA 2-oxoglutarate-a 23.9 1.3E+02 0.0028 31.4 5.0 47 444-492 59-105 (375)
479 TIGR03127 RuMP_HxlB 6-phospho 23.8 4.4E+02 0.0096 23.7 8.3 89 30-128 20-112 (179)
480 TIGR01706 NAPA periplasmic nit 23.7 1.5E+02 0.0032 34.5 6.1 41 299-339 203-249 (830)
481 cd05005 SIS_PHI Hexulose-6-pho 23.6 5.1E+02 0.011 23.3 8.6 88 30-128 23-115 (179)
482 PRK10411 DNA-binding transcrip 23.4 4E+02 0.0086 25.7 8.1 84 395-489 82-171 (240)
483 PRK04175 rpl7ae 50S ribosomal 23.2 1.9E+02 0.0041 24.8 5.2 44 226-269 36-79 (122)
484 cd02755 MopB_Thiosulfate-R-lik 22.9 50 0.0011 35.3 1.9 107 222-335 77-194 (454)
485 PRK13018 cell division protein 22.7 1.4E+02 0.003 31.1 5.0 81 222-310 100-182 (378)
486 PRK08493 NADH dehydrogenase su 22.6 94 0.002 35.9 4.1 107 222-335 297-408 (819)
487 cd02191 FtsZ FtsZ is a GTPase 22.6 2.7E+02 0.0059 27.9 7.0 81 222-310 72-154 (303)
488 cd02765 MopB_4 The MopB_4 CD i 22.6 2.3E+02 0.005 31.2 7.1 41 300-340 157-201 (567)
489 PRK11382 frlB fructoselysine-6 22.5 3.4E+02 0.0074 27.6 7.9 94 31-128 33-132 (340)
490 cd07038 TPP_PYR_PDC_IPDC_like 22.5 1.8E+02 0.0039 26.0 5.2 49 444-494 47-96 (162)
491 PRK11337 DNA-binding transcrip 22.4 5.5E+02 0.012 25.2 9.3 94 31-128 131-227 (292)
492 cd01822 Lysophospholipase_L1_l 22.4 2.7E+02 0.0058 24.6 6.5 49 222-270 87-142 (177)
493 PF00384 Molybdopterin: Molybd 22.3 24 0.00052 37.1 -0.7 115 222-336 23-150 (432)
494 PF10686 DUF2493: Protein of u 22.2 3.1E+02 0.0066 20.9 5.6 47 221-268 16-62 (71)
495 PRK14974 cell division protein 22.1 1.8E+02 0.0039 29.7 5.7 48 221-268 153-200 (336)
496 COG2086 FixA Electron transfer 22.1 1.1E+02 0.0023 30.1 3.9 42 229-270 104-145 (260)
497 PRK05954 precorrin-8X methylmu 22.0 1.8E+02 0.004 27.3 5.2 53 221-274 130-183 (203)
498 cd03415 CbiX_CbiC Archaeal sir 21.9 94 0.002 26.7 3.0 26 238-263 2-27 (125)
499 cd02763 MopB_2 The MopB_2 CD i 21.9 1.2E+02 0.0025 34.4 4.6 112 221-340 75-197 (679)
500 PRK11302 DNA-binding transcrip 21.8 1.2E+02 0.0026 29.8 4.3 46 221-268 114-159 (284)
No 1
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.1e-99 Score=810.89 Aligned_cols=493 Identities=26% Similarity=0.389 Sum_probs=415.3
Q ss_pred CccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHH
Q 009060 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (545)
.||++|+|++.|+++||++|||+||+.+++++|+|.++ +|++|.+|||++|+|||+||+|+|| ||||++|+|||++|+
T Consensus 1 ~~~ga~~lv~~L~~~GV~~VFGiPG~~i~~~~dal~~~-~i~~I~~RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~ 79 (550)
T COG0028 1 MMTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDS-GIRHILVRHEQGAAFAADGYARATGKPGVCLVTSGPGATNL 79 (550)
T ss_pred CCcHHHHHHHHHHHcCCcEEEeCCCccHHHHHHHHHhC-CCcEEEeccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHH
Confidence 48999999999999999999999999999999999986 9999999999999999999999999 999999999999999
Q ss_pred HHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-C
Q 009060 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (545)
Q Consensus 105 ~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (545)
++||++|+.|++|||+||||.++...+++ .+|+ .||..|+++++||++++.+++++++.+++||++|.++ |
T Consensus 80 ~tgla~A~~d~~Pll~itGqv~~~~~g~~-----afQe---~D~~~l~~p~tk~~~~v~~~~~ip~~i~~Af~~A~sgrp 151 (550)
T COG0028 80 LTGLADAYMDSVPLLAITGQVPTSLIGTD-----AFQE---VDQVGLFRPITKYNFEVRSPEDIPEVVARAFRIALSGRP 151 (550)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccccCcc-----hhhh---cchhhHhhhhheeEEEeCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999988887 3443 4899999999999999999999999999999999996 6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhC
Q 009060 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (545)
Q Consensus 184 GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~ 263 (545)
|||||+||.|++.++.....+.... .....+..... +++++++++|.+||||+|++|+|+.++++.+++++|+|+++
T Consensus 152 Gpv~i~iP~Dv~~~~~~~~~~~~~~--~~~~~p~~~~~-~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~ 228 (550)
T COG0028 152 GPVVVDLPKDVLAAEAEEPGPEPAI--LPPYRPAPPPP-EAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLG 228 (550)
T ss_pred ceEEEEcChhHhhcccccccccccc--cccCCCCCCcH-HHHHHHHHHHHhCCCCEEEECCCccccccHHHHHHHHHHHC
Confidence 9999999999988532221111111 11111111122 78999999999999999999999999999999999999999
Q ss_pred CceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecCC
Q 009060 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (545)
Q Consensus 264 ~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 343 (545)
+||++|++|||.+|++||+++|.. |..++..++.++++||+||++|++++++.+. +..+.++.++||||+|+.+++ +
T Consensus 229 ~Pv~~t~~gkg~~p~~hp~~lG~~-g~~g~~~a~~~~~~aDlll~vG~rf~~~~~~-~~~f~~~~~ii~iDidp~ei~-k 305 (550)
T COG0028 229 APVVTTLMGKGAVPEDHPLSLGML-GMHGTKAANEALEEADLLLAVGARFDDRVTG-YSGFAPPAAIIHIDIDPAEIG-K 305 (550)
T ss_pred CCEEEccCcCccCCCCCccccccc-cccccHHHHHHhhcCCEEEEecCCCcccccc-hhhhCCcCCEEEEeCChHHhC-C
Confidence 999999999999999999999996 8888888999999999999999999999887 666655434999999999998 4
Q ss_pred Ccccc----ccHHHHHHHHHHHhccC-chhhh---hhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCC
Q 009060 344 PSLGW----VFMADFLSALAKKLRKN-TTALE---NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415 (545)
Q Consensus 344 ~~~~~----~d~~~~l~~L~~~l~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G 415 (545)
++..+ .|++.+|++|.+.++.. ..++. ++++.+.... .........+|.++++.|++.+++|+|++.|+|
T Consensus 306 ~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~v~~~l~~~~~~daiv~~d~G 383 (550)
T COG0028 306 NYPVDVPIVGDAKATLEALLEELKPERAAWLEELLEARAAYRDLA--LEELADDGIKPQYVIKVLRELLPDDAIVVTDVG 383 (550)
T ss_pred CCCCCeeEeccHHHHHHHHHHhhhhcchHHHHHHHHHHHhhhhhh--hhccCCCccCHHHHHHHHHHhCCCCeEEEeCCc
Confidence 43333 38999999999998753 22221 1111111110 011112223899999999999999999999999
Q ss_pred cccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCC
Q 009060 416 DSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNG 494 (545)
Q Consensus 416 ~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~ 494 (545)
++..|. +++...++++++.+.++|+||||+|+|||||++.|+|+||+|+|||||+|++|||+|++||++|+++||+||+
T Consensus 384 ~~~~w~a~~~~~~~p~~~~~s~~~GtMG~glPaAIGAkla~P~r~Vv~i~GDG~F~m~~qEL~Ta~r~~lpv~ivv~nN~ 463 (550)
T COG0028 384 QHQMWAARYFDFYRPRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAIAGDGGFMMNGQELETAVRYGLPVKIVVLNNG 463 (550)
T ss_pred HHHHHHHHhcccCCCCcEEcCCCCccccchHHHHHHHHhhCCCCcEEEEEcccHHhccHHHHHHHHHhCCCEEEEEEECC
Confidence 998875 4556666778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhh----hhhhcCCC--CCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 495 GYTI----EVEIHDGP--YNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 495 ~~g~----~~~~~~~~--~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+||+ +..++... ..++.+++|.++||+||++ +++|++.+|+
T Consensus 464 ~~g~v~~~q~~~~~~~~~~~~~~~~~f~klAea~G~~-----g~~v~~~~el 510 (550)
T COG0028 464 GYGMVRQWQELFYGGRYSGTDLGNPDFVKLAEAYGAK-----GIRVETPEEL 510 (550)
T ss_pred ccccchHHHHHhcCCCcceeecCCccHHHHHHHcCCe-----eEEeCCHHHH
Confidence 9999 22233332 2456544499999999996 6788888776
No 2
>PLN02573 pyruvate decarboxylase
Probab=100.00 E-value=4.9e-98 Score=812.36 Aligned_cols=519 Identities=85% Similarity=1.383 Sum_probs=431.2
Q ss_pred CCCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcchH
Q 009060 23 GASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 102 (545)
Q Consensus 23 ~~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~ 102 (545)
+++.++++|+|++.|+++||+||||+||+.+++|+++|.+.++|++|.+|||++|+|||+||+|+||+|||++|+|||++
T Consensus 12 ~~~~~~~a~~l~~~L~~~Gv~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyaR~tg~gv~~~t~GpG~~ 91 (578)
T PLN02573 12 SSSDATLGRHLARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARARGVGACVVTFTVGGL 91 (578)
T ss_pred ccccccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHhCCCeEEEecCccHH
Confidence 67889999999999999999999999999999999999655579999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC
Q 009060 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (545)
Q Consensus 103 n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (545)
|+++|+++||.+++|||+|+|+.++...+++..+||.+..+++.++.++|+++|||+.++.+++++++.+++||+.|+++
T Consensus 92 n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~ 171 (578)
T PLN02573 92 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVINNLEDAHELIDTAISTALKE 171 (578)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988888877777765444556778999999999999999999999999999999998
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHh
Q 009060 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (545)
Q Consensus 183 ~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~ 262 (545)
||||||+||.|++..+.+.....+.+....+......+++..+++++++|++||||+|++|.|+.++++.+++++|+|++
T Consensus 172 ~gPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~ 251 (578)
T PLN02573 172 SKPVYISVSCNLAAIPHPTFSREPVPFFLTPRLSNKMSLEAAVEAAAEFLNKAVKPVLVGGPKLRVAKACKAFVELADAS 251 (578)
T ss_pred CCCEEEEeehhhhcCccccccCCCCCcccccCCCChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccchHHHHHHHHHHh
Confidence 89999999999987432111111111111111111123567799999999999999999999999999999999999999
Q ss_pred CCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecC
Q 009060 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (545)
Q Consensus 263 ~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (545)
|+||+||++|||+||++||+|+|++.|..+++.+++++++||+||++|+++++..+..|..+.++.++||||.|+.++++
T Consensus 252 ~~PV~tt~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~~ 331 (578)
T PLN02573 252 GYPVAVMPSAKGLVPEHHPHFIGTYWGAVSTPFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVTIGN 331 (578)
T ss_pred CCCEEECcccCCCCCCcCCCceEEeeCCCCCHHHHHHHHhCCEEEEECCccCCcccccccccCCCCcEEEEeCCEEEECC
Confidence 99999999999999999999999987888999999999999999999999998887766555567789999999999973
Q ss_pred CCccccccHHHHHHHHHHHhccCchhhhhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccccc
Q 009060 343 GPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQ 422 (545)
Q Consensus 343 ~~~~~~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~ 422 (545)
.......+++++|++|++.++.+...|..|++...............++++.++++.|++.+++|++++.|+|++++...
T Consensus 332 ~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iiv~D~G~~~~~~~ 411 (578)
T PLN02573 332 GPAFGCVLMKDFLEALAKRVKKNTTAYENYKRIFVPEGEPLKSEPGEPLRVNVLFKHIQKMLSGDTAVIAETGDSWFNCQ 411 (578)
T ss_pred cceECCcCHHHHHHHHHHHhhccccccccccccccCcccCCCCCCCCccCHHHHHHHHHHhcCCCCEEEEecccchhhHH
Confidence 22233347899999999988643222333322211111111112345699999999999999999999999999744334
Q ss_pred cccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhh
Q 009060 423 KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEI 502 (545)
Q Consensus 423 ~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~ 502 (545)
++..+++..++.+.++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|+++||+||++|++.+..
T Consensus 412 ~~~~~~~~~~~~~~~~gsmG~glpaaiGa~lA~p~r~vv~i~GDG~f~m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~ 491 (578)
T PLN02573 412 KLKLPEGCGYEFQMQYGSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVTAQDVSTMIRCGQKSIIFLINNGGYTIEVEI 491 (578)
T ss_pred hccCCCCCeEEeecchhhhhhhhhHHHHHHHhCCCCceEEEEeccHHHhHHHHHHHHHHcCCCCEEEEEeCCceeEEEee
Confidence 56667777788999999999999999999999999999999999999999999999999999999999999999983332
Q ss_pred cCCCCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceeeE
Q 009060 503 HDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMCV 541 (545)
Q Consensus 503 ~~~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~~ 541 (545)
++..+.+++++||+++|++||..++.+.+.+|++.+||.
T Consensus 492 ~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~~~~eL~ 530 (578)
T PLN02573 492 HDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVRTEEELI 530 (578)
T ss_pred cccCccccCCCCHHHHHHHhcCcCCceeEEEecCHHHHH
Confidence 334456668899999999997322224678999988873
No 3
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=3.5e-94 Score=784.16 Aligned_cols=500 Identities=20% Similarity=0.247 Sum_probs=413.4
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHH
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (545)
..+|++|+|++.|+++||+||||+||+.+++|+++|.+.++|++|.+|||++|+|||+||+|+|| +|||++|+|||++|
T Consensus 2 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n 81 (572)
T PRK08979 2 EMLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTSGPGATN 81 (572)
T ss_pred CcccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEECCCchHhH
Confidence 45799999999999999999999999999999999976557999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (545)
+++||++||.+++|||+|+|+.++...+++ .+| ..||..+++++|||+.++++++++++.+++|++.|.++
T Consensus 82 ~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~-----~~q---~~d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~ 153 (572)
T PRK08979 82 TITGIATAYMDSIPMVVLSGQVPSNLIGND-----AFQ---ECDMIGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGR 153 (572)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCC-----CCc---ccchhHHhhhceeEEEecCCHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999998866654 233 25789999999999999999999999999999999995
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHh
Q 009060 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (545)
Q Consensus 183 ~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~ 262 (545)
+|||||+||.|++.+..+.....+.+....+..+...+++..+++++++|.+||||+|++|.|++++++.++|++|+|++
T Consensus 154 ~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~ 233 (572)
T PRK08979 154 PGPVVIDLPKDCLNPAILHPYEYPESIKMRSYNPTTSGHKGQIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKL 233 (572)
T ss_pred CCcEEEecCHhHhhhhhcccccCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHh
Confidence 79999999999976422110000111000000011122466899999999999999999999999889999999999999
Q ss_pred CCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecC
Q 009060 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (545)
Q Consensus 263 ~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (545)
++||+||++|||.||++||+|+|++ |..+++.+++++++||+||+||+++++..+..|..+.++.++||||.|+.+++
T Consensus 234 ~~pv~tt~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~~~~aD~vl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~- 311 (572)
T PRK08979 234 NLPVVSTLMGLGAFPGTHKNSLGML-GMHGRYEANMAMHNADLIFGIGVRFDDRTTNNLEKYCPNATILHIDIDPSSIS- 311 (572)
T ss_pred CCCEEEcccccccCCCCCcccccCC-ccCCCHHHHHHHHhCCEEEEEcCCCCccccCchhhcCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999997 88899999999999999999999999887766655556778999999999997
Q ss_pred CCcccc----ccHHHHHHHHHHHhccCc-----hhhhhhh----hhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCE
Q 009060 343 GPSLGW----VFMADFLSALAKKLRKNT-----TALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTA 409 (545)
Q Consensus 343 ~~~~~~----~d~~~~l~~L~~~l~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i 409 (545)
+.+..+ .|++.+|++|.+.+..+. .....|. +.+....... .....++++.++++.|++.+++|++
T Consensus 312 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~l~~~l~~d~i 390 (572)
T PRK08979 312 KTVRVDIPIVGSADKVLDSMLALLDESGETNDEAAIASWWNEIEVWRSRNCLAY-DKSSERIKPQQVIETLYKLTNGDAY 390 (572)
T ss_pred CccCCceEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhCchhc-cCCCCCcCHHHHHHHHHHhcCCCeE
Confidence 333333 389999999988775421 0001221 1111000000 1123469999999999999999999
Q ss_pred EEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEE
Q 009060 410 VIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSII 488 (545)
Q Consensus 410 vv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~i 488 (545)
++.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++|+|+|+||+++|||||+|++|||+|++||++|+++
T Consensus 391 vv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~r~~lpv~~ 470 (572)
T PRK08979 391 VASDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCVTGDGSIQMNIQELSTALQYDIPVKI 470 (572)
T ss_pred EEECCcHHHHHHHHhcCcCCCCeEEccCCcccccchhhHHHhhhhhCCCCeEEEEEcchHhhccHHHHHHHHHcCCCeEE
Confidence 999999987654 4566777778999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCchhhhh----hhcCCCCC--CC-CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 489 FLINNGGYTIEV----EIHDGPYN--VI-KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 489 vV~NN~~~g~~~----~~~~~~~~--~l-~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
||+||++|++.+ .++++.+. .+ .++||+++|++||++ +.+|++.+||
T Consensus 471 vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~-----~~~v~~~~eL 524 (572)
T PRK08979 471 INLNNRFLGMVKQWQDMIYQGRHSHSYMDSVPDFAKIAEAYGHV-----GIRISDPDEL 524 (572)
T ss_pred EEEeCCccHHHHHHHHHHhCCcccccCCCCCCCHHHHHHHCCCe-----EEEECCHHHH
Confidence 999999999822 12233222 22 468999999999995 6799998887
No 4
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=100.00 E-value=3.8e-94 Score=784.17 Aligned_cols=495 Identities=17% Similarity=0.212 Sum_probs=409.3
Q ss_pred CccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhc-C-ceEEEEcCCcchHH
Q 009060 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSR-G-VGACVVTFTVGGLS 103 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~t-g-~gv~~~t~GpG~~n 103 (545)
.|+++|+|++.|+++||+||||+||+.+++|++++.++++|++|.+|||++|+|||+||+|+| | +|||++|+|||++|
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~V~~rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N 81 (588)
T TIGR01504 2 RMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 81 (588)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHH
Confidence 578999999999999999999999999999999997655899999999999999999999999 8 99999999999999
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (545)
+++||++||.+++|||+|+|+.++...+++ .++ .+||..+|+++|||+.++.++++++++|++||+.|+++
T Consensus 82 ~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~-----~~q---~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~A~~~A~~~~ 153 (588)
T TIGR01504 82 MITGLYSASADSIPILCITGQAPRARLHKE-----DFQ---AVDIAAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGR 153 (588)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCC-----ccc---ccCHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999998866654 233 35789999999999999999999999999999999986
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHh
Q 009060 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (545)
Q Consensus 183 ~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~ 262 (545)
+|||||+||.|++.++.+...+...+. .... +.+++..+++++++|.+||||+|++|.|+.++++.++|.+|+|++
T Consensus 154 ~GPV~l~iP~Dv~~~~~~~~~~~~~~~--~~~~--~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~ 229 (588)
T TIGR01504 154 PGPVLIDLPFDVQVAEIEFDPDTYEPL--PVYK--PAATRAQIEKAVEMLNAAERPLIVAGGGVINADAADLLQEFAELT 229 (588)
T ss_pred CCeEEEEeCcchhhcccCCcccccccc--cCCC--CCCCHHHHHHHHHHHHhCCCcEEEECCCcchhhhHHHHHHHHHHh
Confidence 799999999999874322110000011 1101 123567899999999999999999999999999999999999999
Q ss_pred CCceEeCCCCccCCCCCCCCccceecCCC-CCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceec
Q 009060 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAV-SSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (545)
Q Consensus 263 ~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~-~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 341 (545)
++||+||++|||+||++||+++|++ |.. +++.+++++++||+||++|+++++..+..|..+.++.++||||.|+.+++
T Consensus 230 g~PV~tt~~gkg~~p~~hpl~~G~~-g~~~~~~~a~~~l~~aD~iL~lG~~l~~~~t~~~~~~~~~~~~I~id~d~~~i~ 308 (588)
T TIGR01504 230 GVPVIPTLMGWGCIPDDHELMAGMV-GLQTSHRYGNATLLESDFVFGIGNRWANRHTGSVDVYTEGRKFVHVDIEPTQIG 308 (588)
T ss_pred CCCeEEcCccCCCCCCCChhhCcCC-CCCCCcHHHHHHHHhCCEEEEECCCCCccccCcccccCCCCeEEEeeCCHHHhc
Confidence 9999999999999999999999997 543 67788899999999999999998887766655556778999999999997
Q ss_pred CCCcccc----ccHHHHHHHHHHHhccC----c-hhhhhhh----hhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCC
Q 009060 342 NGPSLGW----VFMADFLSALAKKLRKN----T-TALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDT 408 (545)
Q Consensus 342 ~~~~~~~----~d~~~~l~~L~~~l~~~----~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 408 (545)
+++..+ .|++.+|++|.+.+... . ..+..|. +.+.. ........+.++++.++++.|++.|+++.
T Consensus 309 -~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~p~~~~~~l~~~l~~d~ 386 (588)
T TIGR01504 309 -RVFAPDLGIVSDAKAALKLLVEVAQELKKAGRLPDRSEWAADCQQRKRT-LLRKTHFDNVPVKPQRVYEEMNKAFGRDV 386 (588)
T ss_pred -CcCCCCeEEEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHh-CcccccCCCCCcCHHHHHHHHHHhCCCCC
Confidence 433333 38999999998866321 0 1111221 11100 00001123346999999999999999999
Q ss_pred EEEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeE
Q 009060 409 AVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSI 487 (545)
Q Consensus 409 ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ 487 (545)
+++.|+|++..|. .++..+++++|+.+.++|+|||++|+|||+|+|.|+|+||+|+|||||+|++|||+|++||++|++
T Consensus 387 ivv~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~pdr~Vv~i~GDG~f~m~~~EL~Ta~r~~lpvv 466 (588)
T TIGR01504 387 CYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTIPAALGVCAADPKRNVVALSGDYDFQFMIEELAVGAQHNIPYI 466 (588)
T ss_pred EEEECCcHHHHHHHHhccccCCCcEEeCCccccccchHhHHHhhhhhCCCCcEEEEEcchHhhccHHHHHHHHHhCCCeE
Confidence 9999999998764 456666677799999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCchhhhh----hhcCCC-----CC-------CCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 488 IFLINNGGYTIEV----EIHDGP-----YN-------VIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 488 ivV~NN~~~g~~~----~~~~~~-----~~-------~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+||+||++|++.+ ..++.. +. +++++||+++|++||++ +.+|++.+||
T Consensus 467 ~iV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~-----~~~V~~~~eL 530 (588)
T TIGR01504 467 HVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCK-----AIRVFKPEEI 530 (588)
T ss_pred EEEEeCCchHHHHHHHHHhcccccceeeccccccccccCCCCCHHHHHHHCCCE-----EEEECCHHHH
Confidence 9999999999822 111111 11 12369999999999995 6889998876
No 5
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.1e-93 Score=781.16 Aligned_cols=501 Identities=19% Similarity=0.242 Sum_probs=413.7
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchH
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGL 102 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~ 102 (545)
|..+|++|+|++.|+++||+||||+||+.+++|++++.+.++|++|.+|||++|+|||+||+|+|| +|||++|+|||++
T Consensus 1 ~~~~~~a~~l~~~L~~~Gv~~vFgvpG~~~~~l~d~l~~~~~i~~i~~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~ 80 (574)
T PRK07979 1 MEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGAT 80 (574)
T ss_pred CCcccHHHHHHHHHHHcCCCEEEEccCcchHHHHHHHHhcCCceEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCccHh
Confidence 345799999999999999999999999999999999975457999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC
Q 009060 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (545)
Q Consensus 103 n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (545)
|+++||++||.+++|||+|+|+.+....+++ .+| ..|+..+++++|||+.++++++++++.+++||+.|.++
T Consensus 81 n~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~q---~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~ 152 (574)
T PRK07979 81 NAITGIATAYMDSIPLVVLSGQVATSLIGYD-----AFQ---ECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASG 152 (574)
T ss_pred hhHHHHHHHhhcCCCEEEEECCCChhccCCC-----CCc---eecHHHHhhcccceEEEeCCHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999998876665 233 25789999999999999999999999999999999996
Q ss_pred -CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHH
Q 009060 183 -SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (545)
Q Consensus 183 -~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~ 261 (545)
+|||||+||.|++....+.....+.+....+..+...++++.+++++++|.+||||+|++|.|++++++.++|++|+|+
T Consensus 153 ~~GPv~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~ 232 (574)
T PRK07979 153 RPGPVVVDLPKDILNPANKLPYVWPESVSMRSYNPTTQGHKGQIKRALQTLVAAKKPVVYVGGGAINAACHQQLKELVEK 232 (574)
T ss_pred CCCcEEEEcChhhhhhhhccccccCcccccccCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHH
Confidence 6999999999998632111000011100000011112356789999999999999999999999998999999999999
Q ss_pred hCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceec
Q 009060 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (545)
Q Consensus 262 ~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 341 (545)
+++||+||+++||.||++||+++|++ |..++..+++++++||+||+||+++++..+..|..+.++.++||||.|+.+++
T Consensus 233 ~~~pv~tt~~gkg~~p~~hp~~~G~~-G~~~~~~~~~~l~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~ 311 (574)
T PRK07979 233 LNLPVVSSLMGLGAFPATHRQSLGML-GMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSIS 311 (574)
T ss_pred hCCCEEEccccCCCCCCCCcccccCC-cCCCCHHHHHHHHhCCEEEEeCCCCcccccCChhhcCCCCeEEEEECCHHHhC
Confidence 99999999999999999999999996 88888999999999999999999998888766655556778999999999997
Q ss_pred CCCcccc----ccHHHHHHHHHHHhccCc-----hhhhhhh----hhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCC
Q 009060 342 NGPSLGW----VFMADFLSALAKKLRKNT-----TALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDT 408 (545)
Q Consensus 342 ~~~~~~~----~d~~~~l~~L~~~l~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 408 (545)
+.+..+ .|++.+|++|++.+..+. .....|. +.+..... .......++++..+++.|++.+++|+
T Consensus 312 -~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~~~l~~d~ 389 (574)
T PRK07979 312 -KTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRARQCL-KYDTHSEKIKPQAVIETLWRLTKGDA 389 (574)
T ss_pred -CcccCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChh-hccCCCCCcCHHHHHHHHHhhcCCCE
Confidence 333333 489999999988775321 0111221 11100000 01111346999999999999999999
Q ss_pred EEEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeE
Q 009060 409 AVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSI 487 (545)
Q Consensus 409 ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ 487 (545)
+++.|+|++..|. .++..+++.+|+.++++|+|||++|+|||+++|+|+|+||+++|||||+|++|||+|++||++|++
T Consensus 390 ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~r~~l~v~ 469 (574)
T PRK07979 390 YVTSDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVL 469 (574)
T ss_pred EEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHHhCCCeE
Confidence 9999999987654 556667777799999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCchhhhh----hhcCCCCC--CC-CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 488 IFLINNGGYTIEV----EIHDGPYN--VI-KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 488 ivV~NN~~~g~~~----~~~~~~~~--~l-~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+||+||++|++.+ ..+.+.+. .+ +++||+++|++||++ +++|++.+||
T Consensus 470 ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~-----g~~v~~~~eL 524 (574)
T PRK07979 470 VLNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHV-----GIQISHPDEL 524 (574)
T ss_pred EEEEeCchhhHHHHHHHHhcCCccccccCCCCCCHHHHHHHCCCE-----EEEECCHHHH
Confidence 9999999999822 12233222 22 468999999999985 6789998876
No 6
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=2.2e-93 Score=779.41 Aligned_cols=509 Identities=20% Similarity=0.260 Sum_probs=417.7
Q ss_pred CCCCCCcccCCCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceE
Q 009060 14 GSAPAPVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGA 92 (545)
Q Consensus 14 ~~~~~~~~~~~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv 92 (545)
+|..-...++...||++|+|++.|+++||+||||+||+++++|+++|.+.++|++|.+|||++|+|||+||+|+|| ++|
T Consensus 8 ~~~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~AdgYar~tg~~gv 87 (587)
T PRK06965 8 FSTAESLSPPAADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAAVHAADGYARATGKVGV 87 (587)
T ss_pred cccccccCCCchhccHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCeE
Confidence 3444445556788999999999999999999999999999999999976568999999999999999999999999 999
Q ss_pred EEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHH
Q 009060 93 CVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELI 172 (545)
Q Consensus 93 ~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l 172 (545)
|++|+|||++|+++||++||.+++|||+|+|+.++...+++ .+| ..||..+|+++|||+.++.+++++++.+
T Consensus 88 ~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~q---~~d~~~l~~~itk~~~~v~~~~~~~~~i 159 (587)
T PRK06965 88 ALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQD-----AFQ---ECDTVGITRPIVKHNFLVKDVRDLAETV 159 (587)
T ss_pred EEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccCCC-----Ccc---cccHHHHhcCCcceeEEeCCHHHHHHHH
Confidence 99999999999999999999999999999999998876654 233 2578999999999999999999999999
Q ss_pred HHHHHHhhhC-CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccch
Q 009060 173 DTAISTALKE-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKA 251 (545)
Q Consensus 173 ~~A~~~a~~~-~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a 251 (545)
+||++.|+++ +|||||+||.|++..+.+...+.+.+.. ...+. ..++++.+++++++|.+||||+|++|.|++++++
T Consensus 160 ~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a 237 (587)
T PRK06965 160 KKAFYIARTGRPGPVVVDIPKDVSKTPCEYEYPKSVEMR-SYNPV-TKGHSGQIRKAVSLLLSAKRPYIYTGGGVILANA 237 (587)
T ss_pred HHHHHHHhcCCCCeEEEEeChhhhhChhccccCcccccc-CCCCC-CCCCHHHHHHHHHHHHhcCCCEEEECCCccccch
Confidence 9999999996 6999999999998742111011111110 00111 1224678999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCC-CCCcE
Q 009060 252 QKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLI-KKEKA 330 (545)
Q Consensus 252 ~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~-~~~~~ 330 (545)
.+++++|+|++|+||+||++|||.||++||+++|++ |..+++.+++++++||+||+||++++++.+..+..+. ++.++
T Consensus 238 ~~~l~~lae~~g~pv~tt~~gkg~~~~~hpl~~G~~-G~~~~~~a~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~ 316 (587)
T PRK06965 238 SRELRQLADLLGYPVTNTLMGLGAYPASDKKFLGML-GMHGTYEANMAMQHCDVLIAIGARFDDRVIGNPAHFASRPRKI 316 (587)
T ss_pred HHHHHHHHHHhCCCEEEccccCCCCCCCChhhcCCC-CCCCCHHHHHHHHhCCEEEEECCCCcccccCChhhcCCCCceE
Confidence 999999999999999999999999999999999997 8888889999999999999999999887665443343 34689
Q ss_pred EEEcCCcceecCCCcccc----ccHHHHHHHHHHHhccCc-----hhhhhhh----hhcCCCCCCCcCCCCCCcCHHHHH
Q 009060 331 IIVQPHRVTVGNGPSLGW----VFMADFLSALAKKLRKNT-----TALENYR----RIYVPPGIPVKRAQNEPLRVNVLF 397 (545)
Q Consensus 331 i~id~d~~~~~~~~~~~~----~d~~~~l~~L~~~l~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 397 (545)
||||.|+.+++ +.+..+ .|++.+|++|++.+.... .....|. +.+...... ......++++..++
T Consensus 317 i~id~d~~~~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~ 394 (587)
T PRK06965 317 IHIDIDPSSIS-KRVKVDIPIVGDVKEVLKELIEQLQTAEHGPDADALAQWWKQIEGWRSRDCLK-YDRESEIIKPQYVV 394 (587)
T ss_pred EEEeCCHHHhC-CcCCCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhh-ccccCCCcCHHHHH
Confidence 99999999887 332222 489999999998764321 0111221 111000000 01123469999999
Q ss_pred HHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHH
Q 009060 398 KHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEI 476 (545)
Q Consensus 398 ~~l~~~l~~~~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL 476 (545)
+.|++.+|+|+|++.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++|+|+|+||+|+|||||+|++|||
T Consensus 395 ~~l~~~l~~d~ii~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~eL 474 (587)
T PRK06965 395 EKLWELTDGDAFVCSDVGQHQMWAAQFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCITGEGSIQMCIQEL 474 (587)
T ss_pred HHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhcCHHHH
Confidence 999999999999999999987654 4566777778999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEEeCCchhhhh----hhcCCCC--CCC-CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 477 STMIRCGQRSIIFLINNGGYTIEV----EIHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 477 ~ta~~~~lpi~ivV~NN~~~g~~~----~~~~~~~--~~l-~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+|++||++|+++||+||++|++.+ ..+.+.+ ..+ .++||+++|++||++ +++|++.+||
T Consensus 475 ~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~-----~~~v~~~~eL 540 (587)
T PRK06965 475 STCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKRYSHSYMDALPDFVKLAEAYGHV-----GMRIEKTSDV 540 (587)
T ss_pred HHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCCccccCCCCCCCHHHHHHHCCCE-----EEEECCHHHH
Confidence 999999999999999999999822 1223333 233 468999999999995 6789988876
No 7
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=6.3e-93 Score=775.61 Aligned_cols=499 Identities=20% Similarity=0.279 Sum_probs=411.8
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHH
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (545)
+.||++|+|++.|+++||+||||+||+++++|+++|.+.++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|
T Consensus 9 ~~~t~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~I~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 88 (595)
T PRK09107 9 RQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEGYARSTGKPGVVLVTSGPGATN 88 (595)
T ss_pred hhhhHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCCeEEEECChHHHHHHHHHHHHHhCCCEEEEECCCccHhH
Confidence 55899999999999999999999999999999999976568999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (545)
+++||++||.+++|||+|+|+.++...+++ .+| ..||..+++++|||+.++.+++++++.+++|++.|+++
T Consensus 89 ~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~-----~~q---~~d~~~l~~~vtk~~~~v~~~~~i~~~l~~A~~~A~s~~ 160 (595)
T PRK09107 89 AVTPLQDALMDSIPLVCITGQVPTHLIGSD-----AFQ---ECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGR 160 (595)
T ss_pred HHHHHHHHhhcCCCEEEEEcCCChhhcCCC-----CCc---ccchhhhhhhheEEEEEeCCHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998866654 233 25789999999999999999999999999999999996
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccc--hHHHHHHHHH
Q 009060 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAK--AQKAFIELAD 260 (545)
Q Consensus 183 ~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~--a~~~l~~lae 260 (545)
+|||||+||.|++..+.+...+...+. ..+..+...++.+.+++++++|.+||||+|++|.|+.+++ +.+++++|+|
T Consensus 161 ~GPV~l~iP~Dv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~a~~~L~~A~rPvil~G~g~~~~~~~a~~~l~~lae 239 (595)
T PRK09107 161 PGPVVVDIPKDVQFATGTYTPPQKAPV-HVSYQPKVKGDAEAITEAVELLANAKRPVIYSGGGVINSGPEASRLLRELVE 239 (595)
T ss_pred CceEEEecCCChhhccccccccccccc-ccCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCcccccchhHHHHHHHHHH
Confidence 799999999999763211101111010 0010111123566899999999999999999999998875 8999999999
Q ss_pred HhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCccee
Q 009060 261 ATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTV 340 (545)
Q Consensus 261 ~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~ 340 (545)
++|+||+||+++||+||++||+|+|++ |..++..+++++++||+||+||+++++..+..|..+.++.++||||.|+.++
T Consensus 240 ~lg~pv~tt~~gkg~~p~~hpl~~G~~-G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~i 318 (595)
T PRK09107 240 LTGFPITSTLMGLGAYPASGKNWLGML-GMHGTYEANMAMHDCDVMLCVGARFDDRITGRLDAFSPNSKKIHIDIDPSSI 318 (595)
T ss_pred HHCCCEEECccccccCCCCCCcccCCC-CCCccHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHh
Confidence 999999999999999999999999997 7888888999999999999999999888776665556677899999999998
Q ss_pred cCCCcccc----ccHHHHHHHHHHHhccCc-----hhhhhhh----hhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCC-C
Q 009060 341 GNGPSLGW----VFMADFLSALAKKLRKNT-----TALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLS-G 406 (545)
Q Consensus 341 ~~~~~~~~----~d~~~~l~~L~~~l~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~ 406 (545)
+ +.+..+ .|++.+|++|.+.+..+. .....|. +.+....... .....++++.++++.|++.++ +
T Consensus 319 ~-~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~l~~~l~~~ 396 (595)
T PRK09107 319 N-KNVRVDVPIIGDVGHVLEDMLRLWKARGKKPDKEALADWWGQIARWRARNSLAY-TPSDDVIMPQYAIQRLYELTKGR 396 (595)
T ss_pred C-CCCCCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhc-cCCCCCcCHHHHHHHHHHhCCCC
Confidence 7 333322 389999999988774321 0111221 1111000000 112346999999999999997 5
Q ss_pred CCEEEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCC
Q 009060 407 DTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQR 485 (545)
Q Consensus 407 ~~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lp 485 (545)
|.+++.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++|+|+|+||+|+|||||+|++|||+|++||++|
T Consensus 397 d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG~f~m~~~EL~Ta~r~~lp 476 (595)
T PRK09107 397 DTYITTEVGQHQMWAAQFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQEMSTAVQYNLP 476 (595)
T ss_pred CeEEEECCcHHHHHHHHhcccCCCCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEEEcCchhhccHHHHHHHHHhCCC
Confidence 888999999987765 4566777788999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCchhhhh----hhcCCCCC--CC-CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 486 SIIFLINNGGYTIEV----EIHDGPYN--VI-KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 486 i~ivV~NN~~~g~~~----~~~~~~~~--~l-~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+++||+||++|++.+ .+++..+. .+ +++||+++|++||++ +++|++.+||
T Consensus 477 vi~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~-----~~~v~~~~el 533 (595)
T PRK09107 477 VKIFILNNQYMGMVRQWQQLLHGNRLSHSYTEAMPDFVKLAEAYGAV-----GIRCEKPGDL 533 (595)
T ss_pred eEEEEEeCCccHHHHHHHHHHhCCccccccCCCCCCHHHHHHHCCCe-----EEEECCHHHH
Confidence 999999999999822 22333332 22 468999999999995 6799998886
No 8
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=1.2e-92 Score=777.79 Aligned_cols=508 Identities=22% Similarity=0.264 Sum_probs=417.4
Q ss_pred CCCCCCCcccCCCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEecCchhHHHHHHhHHhhhcC
Q 009060 13 PGSAPAPVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRG 89 (545)
Q Consensus 13 ~~~~~~~~~~~~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~---~~i~~i~~~hE~~A~~~A~gyar~tg 89 (545)
|.-.+..++-+.++++++|+|++.|+++||+||||+||+.+.+|+++|.+. .+|++|.+|||++|+|||+||+|+||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~~~i~~i~~rhE~~Aa~aA~gyar~tg 84 (616)
T PRK07418 5 PPKIGDSTTVTPQRATGAYALMDSLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATG 84 (616)
T ss_pred CCCCCCccccCCccccHHHHHHHHHHHcCCCEEEeCcCcchHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHhC
Confidence 333444455567889999999999999999999999999999999999642 36999999999999999999999999
Q ss_pred -ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhH
Q 009060 90 -VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDA 168 (545)
Q Consensus 90 -~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~ 168 (545)
+|||++|+|||++|+++||++|+.+++|||+|+|+.++...+++ .+|+ .||..+++++|||+.++.+++++
T Consensus 85 k~gv~~~t~GPG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~-----~~Qe---~d~~~~~~~vtk~~~~v~~~~~i 156 (616)
T PRK07418 85 KVGVCFGTSGPGATNLVTGIATAQMDSVPMVVITGQVPRPAIGTD-----AFQE---TDIFGITLPIVKHSYVVRDPSDM 156 (616)
T ss_pred CCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCccccCCC-----Cccc---ccHHHHhhhcceeEEEeCCHHHH
Confidence 99999999999999999999999999999999999998876665 3332 57899999999999999999999
Q ss_pred HHHHHHHHHHhhhC-CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCcccc
Q 009060 169 HELIDTAISTALKE-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIR 247 (545)
Q Consensus 169 ~~~l~~A~~~a~~~-~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~ 247 (545)
+++|++||+.|.++ +|||||+||.|++..+.+.....+.............++++.+++++++|++||||+|++|.|+.
T Consensus 157 ~~~l~~A~~~A~~~~~GPv~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~AkrPvI~~G~g~~ 236 (616)
T PRK07418 157 ARIVAEAFHIASSGRPGPVLIDIPKDVGQEEFDYVPVEPGSVKPPGYRPTVKGNPRQINAALKLIEEAERPLLYVGGGAI 236 (616)
T ss_pred HHHHHHHHHHHhcCCCCcEEEecchhhhhchhcccccCccccccCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 99999999999986 69999999999987422211000000000000011123567899999999999999999999999
Q ss_pred ccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCC
Q 009060 248 VAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKK 327 (545)
Q Consensus 248 ~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~ 327 (545)
++++.++|++|||++++||++|++|||+||++||+++|.+ |..+++.+++++++||+||+||+++++..+..|..+.++
T Consensus 237 ~~~a~~~l~~lae~l~~pV~tt~~gkg~~p~~hpl~~G~~-G~~g~~~~~~~l~~aDlvL~vG~~~~~~~~~~~~~~~~~ 315 (616)
T PRK07418 237 SAGAHAELKELAERFQIPVTTTLMGKGAFDEHHPLSVGML-GMHGTAYANFAVTECDLLIAVGARFDDRVTGKLDEFASR 315 (616)
T ss_pred cccHHHHHHHHHHHHCCCEEEccCCCcCCCCCCcccccCC-CCCCCHHHHHHHHhCCEEEEEcCCCCccccCChhhcCCC
Confidence 8899999999999999999999999999999999999986 888888999999999999999999988777555555567
Q ss_pred CcEEEEcCCcceecCCCcccc----ccHHHHHHHHHHHhccCc-----hhhh----hhhhhcCCCCCCCcCCCCCCcCHH
Q 009060 328 EKAIIVQPHRVTVGNGPSLGW----VFMADFLSALAKKLRKNT-----TALE----NYRRIYVPPGIPVKRAQNEPLRVN 394 (545)
Q Consensus 328 ~~~i~id~d~~~~~~~~~~~~----~d~~~~l~~L~~~l~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 394 (545)
.++||||.|+.+++ +++..+ .|++.+|++|++.++.+. ..|. .|++.... .......++++.
T Consensus 316 ~~~i~id~d~~~ig-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~ 390 (616)
T PRK07418 316 AKVIHIDIDPAEVG-KNRRPDVPIVGDVRKVLVKLLERSLEPTTPPRTQAWLERINRWKQDYPL----VVPPYEGEIYPQ 390 (616)
T ss_pred CeEEEEeCCHHHhC-CccCCCeEEecCHHHHHHHHHHhhhccccccchHHHHHHHHHHHHhCcc----cccCCCCCcCHH
Confidence 78999999999997 433333 489999999999875422 1221 22211110 111224579999
Q ss_pred HHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHH
Q 009060 395 VLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQ 474 (545)
Q Consensus 395 ~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~ 474 (545)
+++++|++.++ +++++.|+|++..|...+...++.+++.+.++|+|||++|+|||+++|.|+|+||+|+|||||+|++|
T Consensus 391 ~v~~~l~~~~~-d~i~~~D~G~~~~~~~~~~~~~p~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~m~~~ 469 (616)
T PRK07418 391 EVLLAVRDLAP-DAYYTTDVGQHQMWAAQFLRNGPRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICIAGDASFLMNIQ 469 (616)
T ss_pred HHHHHHHhhCC-CcEEEECChHHHHHHHHhhhcCCCeEEcCCCccccccHHHHHHHHHHhCCCCcEEEEEcchHhhhhHH
Confidence 99999999998 59999999998877654333455669999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEeCCchhhhh-h---hcCCCC--CCC--CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 475 EISTMIRCGQRSIIFLINNGGYTIEV-E---IHDGPY--NVI--KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 475 eL~ta~~~~lpi~ivV~NN~~~g~~~-~---~~~~~~--~~l--~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
||+|++||++|+++||+||++|++.+ . .++..+ .++ +.+||+++|++||++ +++|++.+|+
T Consensus 470 eL~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~-----g~~V~~~~el 538 (616)
T PRK07418 470 ELGTLAQYGINVKTVIINNGWQGMVRQWQESFYGERYSASNMEPGMPDFVKLAEAFGVK-----GMVISERDQL 538 (616)
T ss_pred HHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHCCCe-----EEEeCCHHHH
Confidence 99999999999999999999999822 1 122233 233 569999999999996 6899998886
No 9
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=8e-93 Score=774.43 Aligned_cols=499 Identities=21% Similarity=0.285 Sum_probs=411.6
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHH
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (545)
..|+++|+|++.|+++||++|||+||+++++|+++|.++++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|
T Consensus 2 ~~~~~a~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N 81 (574)
T PRK06466 2 ELLSGAEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARATGKTGVVLVTSGPGATN 81 (574)
T ss_pred CcccHHHHHHHHHHHcCCCEEEECCCcchhHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 34799999999999999999999999999999999976568999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (545)
+++||++||.+++|||+|+|+.++...+++ .+| ..||..+++++|||+.++.+++++++.++||++.|.++
T Consensus 82 ~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~q---~~d~~~l~~~itk~s~~v~~~~~~~~~~~rA~~~A~~~~ 153 (574)
T PRK06466 82 AITGIATAYMDSIPMVVLSGQVPSTLIGED-----AFQ---ETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGR 153 (574)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCccccCCC-----ccc---ccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998876654 233 35789999999999999999999999999999999986
Q ss_pred CCcEEEEeCCCCCCCCCCCC--CCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHH
Q 009060 183 SKPVYISISCNLPGIPHPTF--ARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELAD 260 (545)
Q Consensus 183 ~GPV~l~iP~dv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae 260 (545)
||||||+||.|++....+.. .+.+.+.. ...+. ..++++.+++++++|.+||||+|++|.|+.++++.++|++|+|
T Consensus 154 ~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae 231 (574)
T PRK06466 154 PGPVVVDIPKDMTNPAEKFEYEYPKKVKLR-SYSPA-VRGHSGQIRKAVEMLLAAKRPVIYSGGGVVLGNASALLTELAH 231 (574)
T ss_pred CCcEEEEcCHhHhhhhhccccccCcccccc-cCCCC-CCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHH
Confidence 79999999999975211110 01111110 00111 1224567899999999999999999999998899999999999
Q ss_pred HhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCccee
Q 009060 261 ATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTV 340 (545)
Q Consensus 261 ~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~ 340 (545)
++++||++|+++||.||++||+++|++ |..+....++++++||+||++|++++++.+..|..+.++.++||||.|+.++
T Consensus 232 ~~g~pv~tt~~~kg~~~~~hp~~~G~~-G~~~~~~~~~~l~~aD~il~vG~~~~~~~~~~~~~~~~~~~vi~id~d~~~i 310 (574)
T PRK06466 232 LLNLPVTNTLMGLGGFPGTDRQFLGML-GMHGTYEANMAMHHADVILAVGARFDDRVTNGPAKFCPNAKIIHIDIDPASI 310 (574)
T ss_pred HhCCCEEEcCccCCCCCCCChhhcCCC-ccccCHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHh
Confidence 999999999999999999999999997 8888888999999999999999999888776665555667899999999999
Q ss_pred cCCCcccc----ccHHHHHHHHHHHhccCc-----hhhhhhh----hhcCCCCC-CCcCCCCCCcCHHHHHHHHHhhCCC
Q 009060 341 GNGPSLGW----VFMADFLSALAKKLRKNT-----TALENYR----RIYVPPGI-PVKRAQNEPLRVNVLFKHIQDMLSG 406 (545)
Q Consensus 341 ~~~~~~~~----~d~~~~l~~L~~~l~~~~-----~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~ 406 (545)
+ +.+..+ .|++.+|++|++.+.... ..+..|. +.+..... ........++++.++++.|++.+|+
T Consensus 311 ~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~ 389 (574)
T PRK06466 311 S-KTIKADIPIVGPVESVLTEMLAILKEIGEKPDKEALAAWWKQIDEWRGRHGLFPYDKGDGGIIKPQQVVETLYEVTNG 389 (574)
T ss_pred C-CccCCCeEEecCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCcchhcccCCCCCcCHHHHHHHHHhhCCC
Confidence 7 333323 489999999988764321 1111221 11111000 1111123469999999999999999
Q ss_pred CCEEEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCC
Q 009060 407 DTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQR 485 (545)
Q Consensus 407 ~~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lp 485 (545)
|.|++.|+|++..|. .++..+++.+|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|
T Consensus 390 ~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~lp 469 (574)
T PRK06466 390 DAYVTSDVGQHQMFAAQYYKFNKPNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACVTGEGSIQMNIQELSTCLQYGLP 469 (574)
T ss_pred CeEEEECCcHHHHHHHHhccccCCCcEEcCCCcchhhchHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHHhCCC
Confidence 999999999987654 4566666777999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCchhhhh----hhcCCCC--CCC-CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 486 SIIFLINNGGYTIEV----EIHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 486 i~ivV~NN~~~g~~~----~~~~~~~--~~l-~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+++||+||++|++.+ ..+++.+ ..+ +.+||.++|++||++ +.+|++.+||
T Consensus 470 v~ivV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~-----~~~v~~~~el 526 (574)
T PRK06466 470 VKIINLNNGALGMVRQWQDMQYEGRHSHSYMESLPDFVKLAEAYGHV-----GIRITDLKDL 526 (574)
T ss_pred eEEEEEeCCccHHHHHHHHHhcCCceeecCCCCCCCHHHHHHHCCCe-----EEEECCHHHH
Confidence 999999999999822 1223332 223 468999999999996 6789998876
No 10
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=100.00 E-value=1.3e-92 Score=777.09 Aligned_cols=501 Identities=22% Similarity=0.278 Sum_probs=414.0
Q ss_pred CCCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcch
Q 009060 23 GASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGG 101 (545)
Q Consensus 23 ~~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~ 101 (545)
.+.+||++|+|++.|+++||+||||+||+.+++|+++|.++++|++|.+|||++|+|||+||+|+|| ++||++|+|||+
T Consensus 27 ~~~~~~~a~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~ 106 (612)
T PRK07789 27 APERMTGAQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDSTKVRHVLVRHEQGAGHAAEGYAQATGRVGVCMATSGPGA 106 (612)
T ss_pred ccccccHHHHHHHHHHHCCCCEEEEcCCcchHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccH
Confidence 4677899999999999999999999999999999999976568999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhh
Q 009060 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK 181 (545)
Q Consensus 102 ~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~ 181 (545)
+|+++||++||.+++|||+|+|+.+....+++ .+| ..||..+++++|||+.++++++++++++++|++.|++
T Consensus 107 ~N~l~gl~~A~~~~~PllvI~G~~~~~~~~~~-----~~q---~~d~~~l~~~~tk~s~~v~~~~~i~~~l~~A~~~A~~ 178 (612)
T PRK07789 107 TNLVTPIADANMDSVPVVAITGQVGRGLIGTD-----AFQ---EADIVGITMPITKHNFLVTDADDIPRVIAEAFHIAST 178 (612)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCCccccCCC-----cCc---ccchhhhhhcceeEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998866654 233 2588999999999999999999999999999999998
Q ss_pred C-CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHH
Q 009060 182 E-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELAD 260 (545)
Q Consensus 182 ~-~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae 260 (545)
+ +|||||+||.|++.++.+...+...+. ....+...+++..+++++++|.+||||+|++|.|+.++++.+++++|+|
T Consensus 179 ~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~--~~~~~~~~p~~~~i~~~~~~L~~AkrPlIl~G~g~~~~~a~~~l~~lae 256 (612)
T PRK07789 179 GRPGPVLVDIPKDALQAQTTFSWPPRMDL--PGYRPVTKPHGKQIREAAKLIAAARRPVLYVGGGVIRAEASAELRELAE 256 (612)
T ss_pred CCCceEEEEEccchhhcccccccCccccc--cCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHH
Confidence 6 799999999999874321100110011 0000111234667999999999999999999999998899999999999
Q ss_pred HhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCccee
Q 009060 261 ATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTV 340 (545)
Q Consensus 261 ~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~ 340 (545)
++|+||+||+++||.||++||+++|.+ |..++..+++++++||+||++|+++++..+..+..+.++.++||||.|+.++
T Consensus 257 ~l~~PV~tt~~~kg~~p~~hpl~~G~~-G~~~~~~~~~~l~~aDlvL~lG~~l~~~~t~~~~~~~~~~~~i~Id~d~~~i 335 (612)
T PRK07789 257 LTGIPVVTTLMARGAFPDSHPQHLGMP-GMHGTVAAVAALQRSDLLIALGARFDDRVTGKLDSFAPDAKVIHADIDPAEI 335 (612)
T ss_pred HHCCCEEEcccccccCCCCChhhccCC-cccCcHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCcEEEEECCHHHh
Confidence 999999999999999999999999986 8888888899999999999999999887765554455677899999999998
Q ss_pred cCCCcccc----ccHHHHHHHHHHHhccCc-----hhhhhhh----hhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCC
Q 009060 341 GNGPSLGW----VFMADFLSALAKKLRKNT-----TALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGD 407 (545)
Q Consensus 341 ~~~~~~~~----~d~~~~l~~L~~~l~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 407 (545)
+ +++..+ .|++.+|++|++.+..+. ..+..|. +.+...........+.++++.++++.|++.++++
T Consensus 336 ~-~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~ 414 (612)
T PRK07789 336 G-KNRHADVPIVGDVKEVIAELIAALRAEHAAGGKPDLTAWWAYLDGWRETYPLGYDEPSDGSLAPQYVIERLGEIAGPD 414 (612)
T ss_pred C-CCCCCCeEEecCHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHHhCccccccccCCCcCHHHHHHHHHhhCCCC
Confidence 7 333323 489999999998775321 1112222 1111000011112245799999999999999999
Q ss_pred CEEEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCe
Q 009060 408 TAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRS 486 (545)
Q Consensus 408 ~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi 486 (545)
++++.|+|++..|. .++..+.+.+|+.+.++|+|||++|+|||+++++|+|+||+++|||||+|++|||||++||++|+
T Consensus 415 ~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~lpv 494 (612)
T PRK07789 415 AIYVAGVGQHQMWAAQFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDGDGCFQMTNQELATCAIEGIPI 494 (612)
T ss_pred eEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchhhhHHhhhccCCCCcEEEEEcchhhhccHHHHHHHHHcCCCe
Confidence 99999999987665 45666666779999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCchhhhh----hhcCCCCC--CC-----CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 487 IIFLINNGGYTIEV----EIHDGPYN--VI-----KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 487 ~ivV~NN~~~g~~~----~~~~~~~~--~l-----~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
++||+||++|++.+ ..++..+. ++ +.+||+++|++||++ +++|++.+||
T Consensus 495 ~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~-----~~~V~~~~eL 554 (612)
T PRK07789 495 KVALINNGNLGMVRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGCV-----GLRCEREEDV 554 (612)
T ss_pred EEEEEECCchHHHHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCCe-----EEEECCHHHH
Confidence 99999999999822 12233222 22 348999999999996 6789998876
No 11
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=4.5e-93 Score=773.88 Aligned_cols=497 Identities=20% Similarity=0.248 Sum_probs=413.4
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHH
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (545)
.++|++++|++.|+++||+||||+||+++++|+++|.+.++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|
T Consensus 8 ~~~~~~~~i~~~L~~~Gv~~vFgipG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 87 (566)
T PRK07282 8 SPKSGSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAVVTSGPGATN 87 (566)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCceEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 46799999999999999999999999999999999976568999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (545)
+++||++||.+++|||+|+|+.++...+++ .+| ..||..+++++|||+.++++++++++.+++|++.|+++
T Consensus 88 ~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~-----~~q---~~d~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~ 159 (566)
T PRK07282 88 AITGIADAMSDSVPLLVFTGQVARAGIGKD-----AFQ---EADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGR 159 (566)
T ss_pred HHHHHHHHhhcCCCEEEEecccccccCCCC-----Ccc---ccChhchhcCCCceeEEcCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999988866654 233 24788999999999999999999999999999999996
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHh
Q 009060 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (545)
Q Consensus 183 ~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~ 262 (545)
||||||+||.|++..+.+.......+.... . +...+++..+++++++|.+||||+|++|.|+.++++.++|++|+|++
T Consensus 160 ~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l 237 (566)
T PRK07282 160 PGPVVIDLPKDVSALETDFIYDPEVNLPSY-Q-PTLEPNDMQIKKILKQLSKAKKPVILAGGGINYAEAATELNAFAERY 237 (566)
T ss_pred CCeEEEeCChhhhhhhhcccccccccccCC-C-CCCCCCHHHHHHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHh
Confidence 699999999999874321100100111000 1 11123466799999999999999999999999999999999999999
Q ss_pred CCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecC
Q 009060 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (545)
Q Consensus 263 ~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (545)
++||+||++|||.||++||+++|.+ |..++...++++++||+||+||+++++..+..+..+.++.++||||.|+.+++
T Consensus 238 ~~pv~tt~~gkg~ip~~hpl~~G~~-G~~~~~~~~~~~~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~i~- 315 (566)
T PRK07282 238 QIPVVTTLLGQGTIATSHPLFLGMG-GMHGSYAANIAMTEADFMINIGSRFDDRLTGNPKTFAKNAKVAHIDIDPAEIG- 315 (566)
T ss_pred CCCEEeccccCCCCCCCChhhcCCC-CCCCCHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999986 77888889999999999999999998887765554556778999999999997
Q ss_pred CCcccc----ccHHHHHHHHHHHhccCc--hhh-hhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCC
Q 009060 343 GPSLGW----VFMADFLSALAKKLRKNT--TAL-ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415 (545)
Q Consensus 343 ~~~~~~----~d~~~~l~~L~~~l~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G 415 (545)
+++..+ .|++.+|++|++.+..+. ..| +.+.+.+.... .......++++.++++.|++.++++++++.|+|
T Consensus 316 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~l~~~~~~~~ivv~d~G 393 (566)
T PRK07282 316 KIIKTDIPVVGDAKKALQMLLAEPTVHNNTEKWIEKVTKDKNRVR--SYDKKERVVQPQAVIERIGELTNGDAIVVTDVG 393 (566)
T ss_pred CCCCCCeEEecCHHHHHHHHHHhhcccCChHHHHHHHHHHHHhch--hccCcCCCcCHHHHHHHHHhhcCCCeEEEECCc
Confidence 333222 489999999998875421 122 11111110000 011123479999999999999999999999999
Q ss_pred cccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCC
Q 009060 416 DSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNG 494 (545)
Q Consensus 416 ~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~ 494 (545)
++..|. .++..+++.+|+.+.++|+|||++|+|||+++|.|+|+||+++|||||+|++|||+|++||++|+++||+||+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~vV~NN~ 473 (566)
T PRK07282 394 QHQMWAAQYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILFVGDGGFQMTNQELAILNIYKVPIKVVMLNNH 473 (566)
T ss_pred HHHHHHHHhcccCCCCcEecCCccccccchhhHhheeheecCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEeCC
Confidence 987664 4566777777999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhh----hhcCCCC--CCC-CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 495 GYTIEV----EIHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 495 ~~g~~~----~~~~~~~--~~l-~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+|++.+ .++++.+ ..+ +++||+++|++||++ +++|+|.+||
T Consensus 474 ~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~-----~~~v~~~~el 521 (566)
T PRK07282 474 SLGMVRQWQESFYEGRTSESVFDTLPDFQLMAQAYGIK-----HYKFDNPETL 521 (566)
T ss_pred CchHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCE-----EEEECCHHHH
Confidence 999822 2233322 234 578999999999995 6899998876
No 12
>PRK11269 glyoxylate carboligase; Provisional
Probab=100.00 E-value=2.1e-92 Score=772.98 Aligned_cols=496 Identities=18% Similarity=0.226 Sum_probs=408.9
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhc-C-ceEEEEcCCcchH
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSR-G-VGACVVTFTVGGL 102 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~t-g-~gv~~~t~GpG~~ 102 (545)
..||++++|++.|+++||+||||+||+++++|+++|.++++|++|.+|||++|+|||+||+|+| | ++||++|+|||++
T Consensus 2 ~~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~ 81 (591)
T PRK11269 2 AKMRAVDAAVLVLEKEGVTTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGT 81 (591)
T ss_pred CcccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHH
Confidence 4589999999999999999999999999999999997656899999999999999999999999 9 9999999999999
Q ss_pred HHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC
Q 009060 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (545)
Q Consensus 103 n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (545)
|+++|+++||.+++|||+|+|++++...+++ .+| ..||..+|+++|||+.++.++++++++++|||+.|+++
T Consensus 82 N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~q---~~d~~~l~~~itk~s~~v~~~~~~~~~i~~A~~~A~~~ 153 (591)
T PRK11269 82 DMITGLYSASADSIPILCITGQAPRARLHKE-----DFQ---AVDIESIAKPVTKWAVTVREPALVPRVFQQAFHLMRSG 153 (591)
T ss_pred HHHHHHHHHhhcCCCEEEEecCCCccccCCC-----ccc---ccChhhHhhcceeEEEEcCCHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999998876654 232 35789999999999999999999999999999999996
Q ss_pred -CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHH
Q 009060 183 -SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (545)
Q Consensus 183 -~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~ 261 (545)
+|||||+||.|++..+.+. ..+........ .+.++++.+++++++|.+||||+|++|.|+.++++.+++++|+|+
T Consensus 154 ~~GPV~l~iP~Dv~~~~~~~--~~~~~~~~~~~--~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~ 229 (591)
T PRK11269 154 RPGPVLIDLPFDVQVAEIEF--DPDTYEPLPVY--KPAATRAQIEKALEMLNAAERPLIVAGGGVINADASDLLVEFAEL 229 (591)
T ss_pred CCCeEEEEeChhhhhccccc--ccccccccccC--CCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccCHHHHHHHHHHH
Confidence 6999999999997642111 11111001111 112356789999999999999999999999988999999999999
Q ss_pred hCCceEeCCCCccCCCCCCCCccceecCC-CCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCccee
Q 009060 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGA-VSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTV 340 (545)
Q Consensus 262 ~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~-~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~ 340 (545)
+|+||+||++|||.||++||+++|.+ |. .+.+.+++++++||+||+||+++++..+..|..+.++.++||||.|+.++
T Consensus 230 ~g~PV~tt~~gkg~~p~~hpl~~G~~-g~~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~Vd~d~~~~ 308 (591)
T PRK11269 230 TGVPVIPTLMGWGAIPDDHPLMAGMV-GLQTSHRYGNATLLASDFVLGIGNRWANRHTGSVEVYTKGRKFVHVDIEPTQI 308 (591)
T ss_pred hCCCeEecccccCcCCCCChhhccCC-cCCCCcHHHHHHHHhCCEEEEeCCCCCccccCchhhcCCCCeEEEeeCCHHHh
Confidence 99999999999999999999999987 44 36677888999999999999999988776665555667899999999998
Q ss_pred cCCCcccc----ccHHHHHHHHHHHhccC------c--hhh-hhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCC
Q 009060 341 GNGPSLGW----VFMADFLSALAKKLRKN------T--TAL-ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGD 407 (545)
Q Consensus 341 ~~~~~~~~----~d~~~~l~~L~~~l~~~------~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 407 (545)
+ +.+..+ .|++.+|++|.+.+... . ..| +.+.+.+... .......+.++++..+++.|++.+|++
T Consensus 309 ~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~l~~~l~~d 386 (591)
T PRK11269 309 G-RVFGPDLGIVSDAKAALELLVEVAREWKAAGRLPDRSAWVADCQERKRTL-LRKTHFDNVPIKPQRVYEEMNKAFGRD 386 (591)
T ss_pred C-CCCCCCeEEEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhc-hhhccCCCCCcCHHHHHHHHHHhcCCC
Confidence 7 332222 48999999998877431 0 112 1111111110 000112234699999999999999999
Q ss_pred CEEEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCe
Q 009060 408 TAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRS 486 (545)
Q Consensus 408 ~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi 486 (545)
++++.|+|++..|. .++..+++..|+.++++|+|||++|+|||++++.|+|+||+++|||||+|++|||+|++||++|+
T Consensus 387 ~ivv~d~g~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~~~~lpv 466 (591)
T PRK11269 387 TCYVSTIGLSQIAAAQFLHVYKPRHWINCGQAGPLGWTIPAALGVRAADPDRNVVALSGDYDFQFLIEELAVGAQFNLPY 466 (591)
T ss_pred cEEEECCcHHHHHHHHhcccCCCCcEEeCCccccccchhhhHHhhhhhCCCCcEEEEEccchhhcCHHHHHHHHHhCCCe
Confidence 99999999987654 45566666778888899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCchhhhhh----hcCC-----CCCC-------CCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 487 IIFLINNGGYTIEVE----IHDG-----PYNV-------IKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 487 ~ivV~NN~~~g~~~~----~~~~-----~~~~-------l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
++||+||++||+.+. ++.. .+.. .+++||+++|++||++ +.+|++.+||
T Consensus 467 ~~vV~NN~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~-----~~~v~~~~eL 531 (591)
T PRK11269 467 IHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCK-----AIRVFKPEDI 531 (591)
T ss_pred EEEEEeCCchhHHHHHHHHhccCccceeeccccccccccCCCCCHHHHHHHCCCe-----EEEECCHHHH
Confidence 999999999998221 1111 1111 2469999999999995 6789998886
No 13
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=7.3e-92 Score=763.60 Aligned_cols=493 Identities=20% Similarity=0.257 Sum_probs=412.4
Q ss_pred CccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHH
Q 009060 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (545)
.+|++|+|++.|+++||+||||+||+.+++|++++.+ ++|++|.+|||++|+|||+||+|+|| +|||++|+|||++|+
T Consensus 14 ~~~~a~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~-~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~ 92 (570)
T PRK06725 14 EVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYE-SGLKHILTRHEQAAIHAAEGYARASGKVGVVFATSGPGATNL 92 (570)
T ss_pred cccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHh-cCCcEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHH
Confidence 5899999999999999999999999999999999975 47999999999999999999999999 999999999999999
Q ss_pred HHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-C
Q 009060 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (545)
Q Consensus 105 ~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (545)
++||++||.+++|||+|+|+.++...+++ .+| ..||..+++++|||+.++.+++++++.+++||+.|+++ +
T Consensus 93 ~~gla~A~~~~~Pvl~I~G~~~~~~~~~~-----~~q---~~d~~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~s~~~ 164 (570)
T PRK06725 93 VTGLADAYMDSIPLVVITGQVATPLIGKD-----GFQ---EADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRP 164 (570)
T ss_pred HHHHHHHhhcCcCEEEEecCCCcccccCC-----CCc---ccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998866654 233 25889999999999999999999999999999999996 6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhC
Q 009060 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (545)
Q Consensus 184 GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~ 263 (545)
|||||+||.|++..+.+.......+. .+..+...+++..+++++++|.+||||+|++|.|+.++++.++|.+|+|+++
T Consensus 165 GPV~l~iP~Dv~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~ 242 (570)
T PRK06725 165 GPVLIDIPKDVQNEKVTSFYNEVVEI--PGYKPEPRPDSMKLREVAKAISKAKRPLLYIGGGVIHSGGSEELIEFARENR 242 (570)
T ss_pred CcEEEccccchhhcccccccCccccc--ccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHHHHHHhC
Confidence 99999999999864221100100010 0000111235667999999999999999999999999999999999999999
Q ss_pred CceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecCC
Q 009060 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (545)
Q Consensus 264 ~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 343 (545)
+||+||+++||.||++||+++|++ |..+++.+++++++||+||++|+++++..+..+..+.++.++||||.|+.+++ +
T Consensus 243 ~PV~tt~~~kg~~p~~hp~~~G~~-G~~~~~~~~~~l~~aDlil~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~-~ 320 (570)
T PRK06725 243 IPVVSTLMGLGAYPPGDPLFLGML-GMHGTYAANMAVTECDLLLALGVRFDDRVTGKLELFSPHSKKVHIDIDPSEFH-K 320 (570)
T ss_pred CCEEECCccCcCCCCCChhhcCCC-CCCCCHHHHHHHHhCCEEEEeCCCCCccccCcccccCCCCeEEEEeCCHHHhC-C
Confidence 999999999999999999999997 88888889999999999999999998887765544556678999999999997 4
Q ss_pred Ccccc----ccHHHHHHHHHHHhccCc-hhh----hhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecC
Q 009060 344 PSLGW----VFMADFLSALAKKLRKNT-TAL----ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAET 414 (545)
Q Consensus 344 ~~~~~----~d~~~~l~~L~~~l~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~ 414 (545)
++..+ .|+..+|++|.+.+.... ..| ..|++..... .. ....++++.++++.|++.+|+|++++.|+
T Consensus 321 ~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~l~~~~~~~~l~~~l~~d~iiv~d~ 396 (570)
T PRK06725 321 NVAVEYPVVGDVKKALHMLLHMSIHTQTDEWLQKVKTWKEEYPLS---YK-QKESELKPQHVINLVSELTNGEAIVTTEV 396 (570)
T ss_pred CCCCCeEEecCHHHHHHHHHHhccccCcHHHHHHHHHHHHhChhh---hc-ccCCCcCHHHHHHHHHhhCCCCcEEEeCC
Confidence 33333 389999999998775421 122 1122111100 01 12346999999999999999999999999
Q ss_pred Ccccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeC
Q 009060 415 GDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINN 493 (545)
Q Consensus 415 G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN 493 (545)
|++..|. .++..+.+.+|+.+.++|+|||++|+|||+++|.|+|+||+++|||||+|+++||+|++||++|+++||+||
T Consensus 397 g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~Ta~~~~lpi~~vV~NN 476 (570)
T PRK06725 397 GQHQMWAAHFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICIAGDASFQMNIQELQTIAENNIPVKVFIINN 476 (570)
T ss_pred cHHHHHHHHhccccCCCeEEccCCcccccchhhHHHhhHhhcCCCeEEEEEecchhhccHHHHHHHHHhCCCeEEEEEEC
Confidence 9987654 456677777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cchhhhhh----hcCCCC--CCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 494 GGYTIEVE----IHDGPY--NVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 494 ~~~g~~~~----~~~~~~--~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
++|++.+. .++..+ .++.++||.++|++||++ +.+|++.+|+
T Consensus 477 ~~~~~~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~~l 524 (570)
T PRK06725 477 KFLGMVRQWQEMFYENRLSESKIGSPDFVKVAEAYGVK-----GLRATNSTEA 524 (570)
T ss_pred CccHHHHHHHHHhcCCccccCcCCCCCHHHHHHHCCCe-----EEEeCCHHHH
Confidence 99998321 223333 355689999999999996 6788887776
No 14
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=100.00 E-value=9.5e-92 Score=760.49 Aligned_cols=501 Identities=35% Similarity=0.524 Sum_probs=413.7
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcchHHHHH
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLN 106 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~~ 106 (545)
.|++|+|++.|+++||++|||+||+.+++|++++.++++|++|.+|||++|+|||+||+|+||++||++|+|||++|+++
T Consensus 1 ~t~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdgyar~tg~gv~~~t~GPG~~n~~~ 80 (539)
T TIGR03393 1 YTVGDYLLDRLTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKGAAALLTTFGVGELSAIN 80 (539)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCcEeccCCcccHHHHhhhhhhhcCceEEEEecCccHHHHhh
Confidence 37899999999999999999999999999999997656899999999999999999999999999999999999999999
Q ss_pred HHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcE
Q 009060 107 AIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPV 186 (545)
Q Consensus 107 ~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV 186 (545)
||++||.+++|||+|+|+.++...+++..+|+.++...+.+..++++++|||+..+ +++++++.+++|++.|.+++|||
T Consensus 81 gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~itk~~~~~-~~~~~~~~i~~a~~~A~~~~gPv 159 (539)
T TIGR03393 81 GIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFYRMAAEVTVAQAVL-TEQNATAEIDRVITTALRERRPG 159 (539)
T ss_pred HHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHHHHHhhceEEEEEEe-ChhhhHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998876666666665555444545578999999999866 78999999999999999988999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCce
Q 009060 187 YISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (545)
Q Consensus 187 ~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv 266 (545)
||+||.|++..+ ...+ ..+............+++.+++++++|++||||+|++|.|+.++++.++|.+|+|++++||
T Consensus 160 ~l~iP~Dv~~~~--~~~~-~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv 236 (539)
T TIGR03393 160 YLMLPVDVAAKA--VTPP-VNPLVTHKPAHADSALRAFRDAAENKLAMAKRVSLLADFLALRHGLKHALQKWVKEVPMPH 236 (539)
T ss_pred EEEecccccCCc--cCCC-CcccCcCCCCCChHHHHHHHHHHHHHHHhCCCCEEEeChhhcccChHHHHHHHHHHhCCCE
Confidence 999999998743 2111 1111010001111122345899999999999999999999998899999999999999999
Q ss_pred EeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecCCCcc
Q 009060 267 AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSL 346 (545)
Q Consensus 267 ~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~ 346 (545)
+||++|||+||++||+++|.+.|..+.+.+++++++||+||++|+++++..+..|....+..++||||.|+.+++ +...
T Consensus 237 ~tt~~gkg~~~~~hpl~lG~~~g~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~~~~~~~-~~~~ 315 (539)
T TIGR03393 237 ATLLMGKGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICVGVRFTDTITAGFTHQLTPEQTIDVQPHAARVG-NVWF 315 (539)
T ss_pred EECcccCccccCcCCCeEEEEeCCCCCHHHHHHHhhCCEEEEECCcccccccceeeccCCcccEEEEcCCeEEEC-ceEe
Confidence 999999999999999999998777777889999999999999999999887766643223468999999999886 3332
Q ss_pred cc---ccHHHHHHHHHHHhccCchhhhhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcccccccc
Q 009060 347 GW---VFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQK 423 (545)
Q Consensus 347 ~~---~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~ 423 (545)
.+ .|+..+|++|++.+... |.... ..+.. .......++++..+++.|++.+|++++++.|+|++.++..+
T Consensus 316 ~~~~i~D~~~~l~~l~~~l~~~---~~~~~--~~~~~--~~~~~~~~l~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~ 388 (539)
T TIGR03393 316 TGIPMNDAIETLVELCEHAGLM---WSSSG--AIPFP--QPDESRSALSQENFWQTLQTFLRPGDIILADQGTSAFGAAD 388 (539)
T ss_pred CCcCHHHHHHHHHHHhhhcccc---ccccc--ccCcC--CCCCCCCccCHHHHHHHHHHhcCCCCEEEEccCchhhhhhh
Confidence 22 47788888888776421 11110 00100 01112246999999999999999999999999998755556
Q ss_pred ccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc
Q 009060 424 LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH 503 (545)
Q Consensus 424 ~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~ 503 (545)
+..+.+.+++.+.++|+|||++|+|||+++|.|+|+||+++|||||+|++|||+|++||++|+++||+||++|++.+.++
T Consensus 389 ~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~ 468 (539)
T TIGR03393 389 LRLPADVNFIVQPLWGSIGYTLPAAFGAQTACPNRRVILLIGDGSAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIH 468 (539)
T ss_pred ccCCCCCeEEechhhhhhhhHHHHHHHHHhcCCCCCeEEEEcCcHHHhHHHHHHHHHHcCCCCEEEEEeCCceEEEEeec
Confidence 66777777999999999999999999999999999999999999999999999999999999999999999999833222
Q ss_pred --CCCCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 504 --DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 504 --~~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+..+.+++++||+++|++||+++ -+.+++|++.+||
T Consensus 469 ~~~~~~~~~~~~df~~la~a~G~~~-~~~~~~v~~~~el 506 (539)
T TIGR03393 469 GAEQRYNDIALWNWTHLPQALSLDP-QSECWRVSEAEQL 506 (539)
T ss_pred CCCCCcCcCCCCCHHHHHHHcCCCC-ccceEEeccHHHH
Confidence 23566778899999999999963 2347899998876
No 15
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=100.00 E-value=1.2e-91 Score=762.13 Aligned_cols=490 Identities=23% Similarity=0.309 Sum_probs=409.8
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHH
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (545)
||++++|++.|+++||++|||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+|| ++||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~v~~~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~ 79 (548)
T PRK08978 1 MNGAQWVVHALRAQGVDTVFGYPGGAIMPVYDALYD-GGVEHLLCRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLI 79 (548)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHh-cCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence 689999999999999999999999999999999975 48999999999999999999999999 9999999999999999
Q ss_pred HHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-CC
Q 009060 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (545)
Q Consensus 106 ~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~G 184 (545)
+||++||.+++|||+|+|++++...+++ .+| ..||..+++++|||+.+++++++++++++||++.|.++ +|
T Consensus 80 ~~l~~A~~~~~Pvl~i~g~~~~~~~~~~-----~~q---~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~G 151 (548)
T PRK08978 80 TGLADALLDSVPVVAITGQVSSPLIGTD-----AFQ---EIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPG 151 (548)
T ss_pred HHHHHHhhcCCCEEEEecCCCccccCCC-----CCc---ccchhccccCceeeEEEECCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998866654 233 35789999999999999999999999999999999996 79
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCC
Q 009060 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (545)
Q Consensus 185 PV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~ 264 (545)
||||+||.|++..+.+ ...+.+ ... ....++++.+++++++|.+||||+|++|.|+.++++.+++++|||++|+
T Consensus 152 PV~l~iP~dv~~~~~~--~~~~~~--~~~--~~~~~~~~~l~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~ 225 (548)
T PRK08978 152 PVLVDIPKDIQLAEGE--LEPHLT--TVE--NEPAFPAAELEQARALLAQAKKPVLYVGGGVGMAGAVPALREFLAATGM 225 (548)
T ss_pred cEEEecChhhhhcccc--cccccc--ccC--CCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHCC
Confidence 9999999999864322 111111 100 1112356689999999999999999999999988899999999999999
Q ss_pred ceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecCCC
Q 009060 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (545)
Q Consensus 265 Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~ 344 (545)
||+||++|||.||++||+++|.+ |..+.+.+++++++||+||++|+++++..+..+..+.++.++||||.|+.+++ +.
T Consensus 226 Pv~tt~~gkg~~~~~hp~~~G~~-g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~ 303 (548)
T PRK08978 226 PAVATLKGLGAVEADHPYYLGML-GMHGTKAANLAVQECDLLIAVGARFDDRVTGKLNTFAPHAKVIHLDIDPAEIN-KL 303 (548)
T ss_pred CEEEccccCCCCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEEcCCCCccccCCccccCCCCeEEEEECCHHHhC-CC
Confidence 99999999999999999999986 77788889999999999999999998877655555566778999999999987 33
Q ss_pred cccc----ccHHHHHHHHHHHhccCchhhhhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccc
Q 009060 345 SLGW----VFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFN 420 (545)
Q Consensus 345 ~~~~----~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~ 420 (545)
+..+ .|++.+|++|.+.+.... +.+.+.+.+....... .....++++.+++++|++.+|++++++.|+|++..|
T Consensus 304 ~~~~~~i~~d~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~iiv~d~g~~~~~ 381 (548)
T PRK08978 304 RQAHVALQGDLNALLPALQQPLNIDA-WRQHCAQLRAEHAWRY-DHPGEAIYAPALLKQLSDRKPADTVVTTDVGQHQMW 381 (548)
T ss_pred CCCCeEEecCHHHHHHHHHHhccchH-HHHHHHHHHHhCchhc-cCCCCCcCHHHHHHHHHHhCCCCcEEEecCcHHHHH
Confidence 2222 489999999988664221 1112211110000001 112346999999999999999999999999998765
Q ss_pred c-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhh
Q 009060 421 C-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIE 499 (545)
Q Consensus 421 ~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~ 499 (545)
. .++..+++.+|+.+.++|+|||++|+|||++++.|+|+||+++|||||+|++|||+|++||++|+++||+||++|++.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~l~v~ivV~NN~~~~~~ 461 (548)
T PRK08978 382 VAQHMRFTRPENFITSSGLGTMGFGLPAAIGAQVARPDDTVICVSGDGSFMMNVQELGTIKRKQLPVKIVLLDNQRLGMV 461 (548)
T ss_pred HHHhcccCCCCeEEeCCchhhhhchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCccHHH
Confidence 4 456666777899999999999999999999999999999999999999999999999999999999999999999982
Q ss_pred h----hhcCCCC--CCC-CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 500 V----EIHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 500 ~----~~~~~~~--~~l-~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+ ..+++.+ .++ +++||+++|++||++ +++|++.+|+
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~-----~~~v~~~~el 504 (548)
T PRK08978 462 RQWQQLFFDERYSETDLSDNPDFVMLASAFGIP-----GQTITRKDQV 504 (548)
T ss_pred HHHHHHHhCCcceecCCCCCCCHHHHHHHCCCe-----EEEECCHHHH
Confidence 2 2223333 234 579999999999996 6789988876
No 16
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=2.6e-91 Score=760.52 Aligned_cols=496 Identities=22% Similarity=0.301 Sum_probs=410.9
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHH
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (545)
+.||++|+|++.|+++||++|||+||+++++|+++|.+ ++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|
T Consensus 6 ~~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~-~~i~~v~~~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n 84 (561)
T PRK06048 6 EKMTGARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYD-SDLRHILVRHEQAAAHAADGYARATGKVGVCVATSGPGATN 84 (561)
T ss_pred ccccHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhh-CCCeEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHH
Confidence 45899999999999999999999999999999999965 58999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (545)
+++||++||.+++|||+|+|+.+....+++ .+| ..||..+++++|||+.++++++++++.++||++.|.++
T Consensus 85 ~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~q---~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A~~~A~~~~ 156 (561)
T PRK06048 85 LVTGIATAYMDSVPIVALTGQVPRSMIGND-----AFQ---EADITGITMPITKHNYLVQDAKDLPRIIKEAFHIASTGR 156 (561)
T ss_pred HHHHHHHHhhcCCCEEEEeccCCccccCCC-----Ccc---ccchhhhccCcceEEEEeCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998866654 232 25789999999999999999999999999999999996
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHh
Q 009060 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (545)
Q Consensus 183 ~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~ 262 (545)
||||||+||.|++..+.+...+...+... ..+. ..++.+.+++++++|.+||||+|++|.|++++++.+++++|+|++
T Consensus 157 ~GPV~l~iP~dv~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~i~~~a~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~l 234 (561)
T PRK06048 157 PGPVLIDLPKDVTTAEIDFDYPDKVELRG-YKPT-YKGNPQQIKRAAELIMKAERPIIYAGGGVISSNASEELVELAETI 234 (561)
T ss_pred CCeEEEecChhhhhcccccccCccccccc-CCCC-CCCCHHHHHHHHHHHHhCCCCEEEECCCcccccHHHHHHHHHHHh
Confidence 79999999999986422110011111100 0111 123466899999999999999999999999989999999999999
Q ss_pred CCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecC
Q 009060 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (545)
Q Consensus 263 ~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (545)
|+||+||+++||.||++||+++|.+ |..+.+.+++++++||+||++|+++++..+..+..+.+..++||||.|+.+++
T Consensus 235 g~pV~tt~~~kg~~~~~hpl~~G~~-g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~- 312 (561)
T PRK06048 235 PAPVTTTLMGIGAIPTEHPLSLGML-GMHGTKYANYAIQESDLIIAVGARFDDRVTGKLASFAPNAKIIHIDIDPAEIS- 312 (561)
T ss_pred CCCEEEccccCccCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999986 88888899999999999999999998877765555556778999999999887
Q ss_pred CCcccc----ccHHHHHHHHHHHhccCc-hhhh-hhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCc
Q 009060 343 GPSLGW----VFMADFLSALAKKLRKNT-TALE-NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGD 416 (545)
Q Consensus 343 ~~~~~~----~d~~~~l~~L~~~l~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~ 416 (545)
+++..+ .|++++|++|++.++.+. ..|. .+.+.+........ ....++++.++++.|++.+| +++++.|+|+
T Consensus 313 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~l~~~~p-~~iiv~d~g~ 390 (561)
T PRK06048 313 KNVKVDVPIVGDAKQVLKSLIKYVQYCDRKEWLDKINQWKKEYPLKYK-EREDVIKPQYVIEQIYELCP-DAIIVTEVGQ 390 (561)
T ss_pred CCCCCCeEEEeCHHHHHHHHHHhccccCcHHHHHHHHHHHHhChhhcc-CCCCCcCHHHHHHHHHhhCC-CcEEEEcCcH
Confidence 333332 489999999999876432 1221 11111100000001 12347999999999999998 7999999999
Q ss_pred ccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCc
Q 009060 417 SWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGG 495 (545)
Q Consensus 417 ~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~ 495 (545)
+..|. .++..+++.+|+.+.++|+|||++|+|||++++.|+|+||+++|||||+|++|||||++||++|+++||+||++
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~vV~NN~~ 470 (561)
T PRK06048 391 HQMWAAQYFKYKYPRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDIAGDGSFQMNSQELATAVQNDIPVIVAILNNGY 470 (561)
T ss_pred HHHHHHHhcccCCCCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEEEeCchhhccHHHHHHHHHcCCCeEEEEEECCc
Confidence 86654 45666677789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhh----hhcCCCC--CCC-CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 496 YTIEV----EIHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 496 ~g~~~----~~~~~~~--~~l-~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
|++.+ .+++..+ .++ +++||.++|++||++ +.+|++.+|+
T Consensus 471 y~~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~-----~~~v~t~~el 517 (561)
T PRK06048 471 LGMVRQWQELFYDKRYSHTCIKGSVDFVKLAEAYGAL-----GLRVEKPSEV 517 (561)
T ss_pred cHHHHHHHHHHcCCcccccCCCCCCCHHHHHHHCCCe-----EEEECCHHHH
Confidence 99832 2223333 233 679999999999996 6789998876
No 17
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=100.00 E-value=3.3e-91 Score=762.44 Aligned_cols=493 Identities=19% Similarity=0.279 Sum_probs=408.9
Q ss_pred CccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHH
Q 009060 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (545)
+||++++|++.|+++||++|||+||+.+++|++++.+ ++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|+
T Consensus 1 ~~~~~~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~-~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~ 79 (579)
T TIGR03457 1 KMTPSEAFVEVLVANGVTHAFGIMGSAFMDAMDLFPP-AGIRFIPVVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNC 79 (579)
T ss_pred CCcHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhh-cCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHH
Confidence 5899999999999999999999999999999999975 58999999999999999999999999 999999999999999
Q ss_pred HHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCC
Q 009060 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (545)
Q Consensus 105 ~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~G 184 (545)
++||++||.+++|||+|+|+.++...+++ .+| ..||..+|+++|||+.++++++++++.+++|++.|.+++|
T Consensus 80 ~~gla~A~~~~~Pvl~I~g~~~~~~~~~~-----~~Q---~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~G 151 (579)
T TIGR03457 80 VTAIAAAYWAHTPVVIVTPEAGTKTIGLG-----GFQ---EADQLPMFQEFTKYQGHVRHPSRMAEVLNRCFERAWREMG 151 (579)
T ss_pred HHHHHHHhhcCCCEEEEeCCCccccCCCC-----CCc---ccchhhhhhcceeEEEecCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998866654 233 2478999999999999999999999999999999999889
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCC
Q 009060 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (545)
Q Consensus 185 PV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~ 264 (545)
||||+||.|++..+.+ ...+.+.... . ..+++..+++++++|.+||||+|++|.|+.++++.++|++|+|++|+
T Consensus 152 PV~l~iP~Dv~~~~~~--~~~~~~~~~~--~--~~~~~~~i~~~~~~L~~A~rP~i~~G~g~~~~~a~~~l~~lae~~~~ 225 (579)
T TIGR03457 152 PAQLNIPRDYFYGEID--VEIPRPVRLD--R--GAGGATSLAQAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGA 225 (579)
T ss_pred CEEEEeCcchhhhhcc--cccCcccccC--C--CCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHhCC
Confidence 9999999999874322 1111111111 1 12356679999999999999999999999999999999999999999
Q ss_pred ceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCccc-cc--ccCCCCCcEEEEcCCcceec
Q 009060 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSV-GY--SLLIKKEKAIIVQPHRVTVG 341 (545)
Q Consensus 265 Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~-~~--~~~~~~~~~i~id~d~~~~~ 341 (545)
||+||+++||.||++||+++|++ |..+++..++++++||+||+||++++++.+. .| ..+.++.++||||.|+.+++
T Consensus 226 PV~tt~~gkg~~p~~hp~~~G~~-g~~g~~~~~~~l~~aDlil~lG~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~ 304 (579)
T TIGR03457 226 PVVNSYLHNDSFPASHPLWVGPL-GYQGSKAAMKLISDADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIG 304 (579)
T ss_pred CEEEcccccccCCCCCchhccCC-cCcchHHHHHHHHhCCEEEEECCCCcccccccccccccCCCCCeEEEEeCCHHHhC
Confidence 99999999999999999999985 7888888899999999999999999866442 12 23345678999999999987
Q ss_pred CCCcccc----ccHHHHHHHHHHHhccCc-------------hhhhhhhh----hcC-CCCCC------CcCCCCCCcCH
Q 009060 342 NGPSLGW----VFMADFLSALAKKLRKNT-------------TALENYRR----IYV-PPGIP------VKRAQNEPLRV 393 (545)
Q Consensus 342 ~~~~~~~----~d~~~~l~~L~~~l~~~~-------------~~~~~~~~----~~~-~~~~~------~~~~~~~~~~~ 393 (545)
+++..+ .|++.+|++|.+.+..+. ..+..|.+ .+. ..... .......++++
T Consensus 305 -~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 383 (579)
T TIGR03457 305 -LVKKVTVGICGDAKAAAAEILQRLAGKAGDANRAERKAKIQAERSAWEQELSEMTHERDPFSLDMIVEQRQEEGNWLHP 383 (579)
T ss_pred -CCCCCCeeEecCHHHHHHHHHHhhhhcccccchhhhhhhhhhhHHHHHHHHHHHHhhccccccccccccccCCCCCcCH
Confidence 333232 489999999988774320 01112211 100 00000 00123356999
Q ss_pred HHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhccc
Q 009060 394 NVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT 472 (545)
Q Consensus 394 ~~~~~~l~~~l~~~~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~ 472 (545)
.++++.|++.+++|++++.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++++|+|+||+++|||||+|+
T Consensus 384 ~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~Vv~i~GDG~f~m~ 463 (579)
T TIGR03457 384 RQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAWGMS 463 (579)
T ss_pred HHHHHHHHHhCCCCeEEEECCchhHHHHHHhcCcCCCCeEEcCCccccccchHHHHHhhhhhCCCCcEEEEEcchHHhcc
Confidence 9999999999999999999999987665 456677778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCchhhhh----hhcCCCC--CCCCC-CCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 473 AQEISTMIRCGQRSIIFLINNGGYTIEV----EIHDGPY--NVIKN-WDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 473 ~~eL~ta~~~~lpi~ivV~NN~~~g~~~----~~~~~~~--~~l~~-~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+|||+|++||++|+++||+||++|++.+ ..+++.+ .+++. +||+++|++||++ +++|++.+||
T Consensus 464 ~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~-----g~~v~~~~el 533 (579)
T TIGR03457 464 MNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESELSFAGIADAMGAK-----GVVVDKPEDV 533 (579)
T ss_pred HHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcceeccCCCCCCHHHHHHHCCCe-----EEEECCHHHH
Confidence 9999999999999999999999999822 2223333 24544 7999999999995 6789998876
No 18
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=3.1e-91 Score=760.22 Aligned_cols=496 Identities=20% Similarity=0.262 Sum_probs=412.4
Q ss_pred CccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHH
Q 009060 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (545)
+++++++|++.|+++||+||||+||+++++|++++.++++|++|.+|||++|+|||+||+|+|| +|||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~~l~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~ 81 (563)
T PRK08527 2 KLSGSQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYARASGKVGVAIVTSGPGFTNA 81 (563)
T ss_pred CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHH
Confidence 4789999999999999999999999999999999976568999999999999999999999999 999999999999999
Q ss_pred HHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-C
Q 009060 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (545)
Q Consensus 105 ~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (545)
++||++||.+++|||+|+|+.++...+++ .+| ..||..+++++|||+.++++++++++.|++|++.|+++ |
T Consensus 82 ~~gla~A~~~~~Pvl~i~G~~~~~~~~~~-----~~q---~~d~~~~~~~~tk~s~~v~~~~~i~~~l~~A~~~a~s~~~ 153 (563)
T PRK08527 82 VTGLATAYMDSIPLVLISGQVPNSLIGTD-----AFQ---EIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRP 153 (563)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCC-----CCc---ccchhhhhhcccceEEEcCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998765553 233 35789999999999999999999999999999999996 7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCcc-cCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHh
Q 009060 184 KPVYISISCNLPGIPHPTFARDPVPFF-LAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (545)
Q Consensus 184 GPV~l~iP~dv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~ 262 (545)
|||||+||.|++..+.+...+.+.+.. ..+. ..++++.+++++++|.+||||+|++|.|+.++++.++|++|+|++
T Consensus 154 GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~L~~A~rPviv~G~g~~~~~a~~~l~~lae~~ 230 (563)
T PRK08527 154 GPVHIDIPKDVTATLGEFEYPKEISLKTYKPT---YKGNSRQIKKAAEAIKEAKKPLFYLGGGAILSNASEEIRELVKKT 230 (563)
T ss_pred CcEEEEcCHhHhhhhhccccccccccccCCCC---CCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHH
Confidence 999999999997642111011111110 1111 122466799999999999999999999999999999999999999
Q ss_pred CCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecC
Q 009060 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (545)
Q Consensus 263 ~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (545)
++||+||+++||+||++||+++|.+ |..+++..++++++||+||+||+++++..+..|..+.++.++||||.|+.+++
T Consensus 231 ~~pV~tt~~~kg~~~~~hpl~~G~~-g~~~~~~~~~~l~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~~~- 308 (563)
T PRK08527 231 GIPAVETLMARGVLRSDDPLLLGML-GMHGSYAANMAMSECDLLISLGARFDDRVTGKLSEFAKHAKIIHVDIDPSSIS- 308 (563)
T ss_pred CCCEEEccccCCCCCCCChhhcCCC-cccCCHHHHHHHHhCCEEEEeCCCCCccccCChhhcCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999996 88888999999999999999999998887766655666778999999999886
Q ss_pred CCccc----cccHHHHHHHHHHHhccCc----hhhhh-hhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEec
Q 009060 343 GPSLG----WVFMADFLSALAKKLRKNT----TALEN-YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAE 413 (545)
Q Consensus 343 ~~~~~----~~d~~~~l~~L~~~l~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d 413 (545)
+.+.. ..|++.+|++|++.++.+. ..|.+ +.+.+...... ......++++.++++.|++.+|++++++.|
T Consensus 309 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d 387 (563)
T PRK08527 309 KIVNADYPIVGDLKNVLKEMLEELKEENPTTYKEWREILKRYNELHPLS-YEDSDEVLKPQWVIERVGELLGDDAIISTD 387 (563)
T ss_pred CCCCCCeEEecCHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhCccc-ccCCCCCcCHHHHHHHHHhhCCCCeEEEEC
Confidence 32222 2489999999999875431 11211 11111110000 111234799999999999999999999999
Q ss_pred CCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEe
Q 009060 414 TGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLIN 492 (545)
Q Consensus 414 ~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~N 492 (545)
+|++..|. .++..+++.+|+.+.++|+|||++|+|||++++.|+|+||+++|||||+|++|||+|++||++|+++||+|
T Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~lpvi~vV~N 467 (563)
T PRK08527 388 VGQHQMWVAQFYPFNYPRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINFTGDGSILMNIQELMTAVEYKIPVINIILN 467 (563)
T ss_pred CcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEecCchhcccHHHHHHHHHhCCCeEEEEEE
Confidence 99987654 45666677779999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhh----hcCCCC--CCC-CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 493 NGGYTIEVE----IHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 493 N~~~g~~~~----~~~~~~--~~l-~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
|++|++.+. .++..+ .++ +++||.++|++||++ +++|++.+|+
T Consensus 468 N~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~el 517 (563)
T PRK08527 468 NNFLGMVRQWQTFFYEERYSETDLSTQPDFVKLAESFGGI-----GFRVTTKEEF 517 (563)
T ss_pred CCcchhHHHHHHhhcCCceeeccCCCCCCHHHHHHHCCCe-----EEEECCHHHH
Confidence 999998322 123333 244 468999999999985 6789988876
No 19
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=5.1e-91 Score=761.08 Aligned_cols=499 Identities=22% Similarity=0.264 Sum_probs=408.5
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhc---CCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchH
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA---EPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGL 102 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~---~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~ 102 (545)
++++|+|++.|+++||+||||+||+++++|+++|.+ +++|++|.+|||++|+|||+||+|+|| ++||++|+|||++
T Consensus 2 ~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 81 (572)
T PRK06456 2 PTGARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGYARASGVPGVCTATSGPGTT 81 (572)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhhccCCCCeEEEeCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHH
Confidence 479999999999999999999999999999999964 246999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC
Q 009060 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (545)
Q Consensus 103 n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (545)
|+++||++||.+++|||+|+|+.++...+++ .+| ..||..+|+++|||+.++++++++++.+++|++.|+++
T Consensus 82 N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~q---~~d~~~i~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~ 153 (572)
T PRK06456 82 NLVTGLITAYWDSSPVIAITGQVPRSVMGKM-----AFQ---EADAMGVFENVTKYVIGIKRIDEIPQWIKNAFYIATTG 153 (572)
T ss_pred HHHHHHHHHHhhCCCEEEEecCCCccccCCC-----Ccc---ccchhhhhhccceeEEEeCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998876665 232 25789999999999999999999999999999999996
Q ss_pred -CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHH
Q 009060 183 -SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (545)
Q Consensus 183 -~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~ 261 (545)
+|||||+||.|++..+.+.......+......+....++++.+++++++|.+||||+|++|.|++++++.++|++|+|+
T Consensus 154 ~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~ 233 (572)
T PRK06456 154 RPGPVVIDIPRDIFYEKMEEIKWPEKPLVKGYRDFPTRIDRLALKKAAEILINAERPIILVGTGVVWSNATPEVLELAEL 233 (572)
T ss_pred CCCcEEEecChhHhhcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccchHHHHHHHHHH
Confidence 6999999999998743221100000100000010112356689999999999999999999999998999999999999
Q ss_pred hCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCC-CCcEEEEcCCccee
Q 009060 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIK-KEKAIIVQPHRVTV 340 (545)
Q Consensus 262 ~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~ 340 (545)
+++||+||+++||.||++||+++|++ |..++..+++.+++||+||++|++++++.+..|..+.+ ..++||||.|+.++
T Consensus 234 ~~~pv~tt~~gkg~i~~~hp~~~G~~-g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~ 312 (572)
T PRK06456 234 LHIPIVSTFPGKTAIPHDHPLYFGPM-GYYGRAEASMAALESDAMLVVGARFSDRTFTSYDEMVETRKKFIMVNIDPTDG 312 (572)
T ss_pred hCCCEEEcCccCcCCCCCCccccccC-CCCCCHHHHHHHHhCCEEEEECCCCchhhccccccccCCCCeEEEEeCChHHh
Confidence 99999999999999999999999986 78888888899999999999999998887666554433 56899999999988
Q ss_pred cCCCccc----cccHHHHHHHHHHHhccCc-----hhhhh-hhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEE
Q 009060 341 GNGPSLG----WVFMADFLSALAKKLRKNT-----TALEN-YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAV 410 (545)
Q Consensus 341 ~~~~~~~----~~d~~~~l~~L~~~l~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv 410 (545)
+ +.+.. ..|++.+|++|.+.+..+. ..|.+ +...+.............++++.++++.|++.+++++++
T Consensus 313 ~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii 391 (572)
T PRK06456 313 E-KAIKVDVGIYGNAKIILRELIKAITELGQKRDRSAWLKRVKEYKEYYSQFYYTEENGKLKPWKIMKTIRQALPRDAIV 391 (572)
T ss_pred C-CccCCCeEEecCHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHhchhhcccccCCCcCHHHHHHHHHHhCCCCEEE
Confidence 6 33222 2489999999988775321 12211 111110000000011234699999999999999999999
Q ss_pred EecCCccccccc-cccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEE
Q 009060 411 IAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIF 489 (545)
Q Consensus 411 v~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~iv 489 (545)
+.|+|++.+|.. ++..+++.+++.+.++|+|||++|+|||++++.|+|+||+++|||||+|++|||+|++||++|+++|
T Consensus 392 ~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~l~i~iv 471 (572)
T PRK06456 392 TTGVGQHQMWAEVFWEVLEPRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSFLMTGTNLATAVDEHIPVISV 471 (572)
T ss_pred EECCcHHHHHHHHhcCcCCCCcEEcCCCcccccchhHHHHHHHHhCCCCeEEEEEccchHhcchHHHHHHHHhCCCeEEE
Confidence 999999877654 4455666679999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCchhhhhh----hcCCCC--CCC-CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 490 LINNGGYTIEVE----IHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 490 V~NN~~~g~~~~----~~~~~~--~~l-~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
|+||++|++.+. ++++.+ .++ +++||+++|++||++ +++|++.+||
T Consensus 472 V~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~-----~~~v~~~~eL 524 (572)
T PRK06456 472 IFDNRTLGLVRQVQDLFFGKRIVGVDYGPSPDFVKLAEAFGAL-----GFNVTTYEDI 524 (572)
T ss_pred EEECCchHHHHHHHHHhhCCCcccccCCCCCCHHHHHHHCCCe-----eEEeCCHHHH
Confidence 999999998322 223322 244 569999999999996 6789998887
No 20
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=100.00 E-value=7e-91 Score=750.46 Aligned_cols=492 Identities=25% Similarity=0.403 Sum_probs=399.8
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHHH
Q 009060 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLN 106 (545)
Q Consensus 28 ~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~ 106 (545)
|.+|+|++.|+++||++|||+||+++++|++++.+.++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFGvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~ 80 (535)
T TIGR03394 1 KLAEALLRALKDRGAQEMFGIPGDFALPFFKVIEETGILPLHTLSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVN 80 (535)
T ss_pred CHHHHHHHHHHHcCCCEEEECCCcccHHHHHHHhhCCCCeEEcccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhh
Confidence 57899999999999999999999999999999976545999999999999999999999999 99999999999999999
Q ss_pred HHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcE
Q 009060 107 AIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPV 186 (545)
Q Consensus 107 ~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV 186 (545)
||++||.+++|||+|+|+.++...+++..+|+.. .+..+|.++|+++|||+.++.+++++++.++||++.|+++||||
T Consensus 81 gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~~~gPv 158 (535)
T TIGR03394 81 AIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQG--RTLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARELSRPV 158 (535)
T ss_pred HHHHHhhcCCCEEEEECCCCcccccCCceeEeec--cchHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHHCCCCE
Confidence 9999999999999999999988777765554422 23336889999999999999999999999999999999989999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCce
Q 009060 187 YISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (545)
Q Consensus 187 ~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv 266 (545)
||+||.|++..+ .......+ . .+......+..+++++++|++||||+|++|+|+.++++.++|++|||++|+||
T Consensus 159 ~i~iP~Dv~~~~--~~~~~~~~--~--~~~~~~~~~~~v~~~~~~l~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv 232 (535)
T TIGR03394 159 YLEIPRDMVNAE--VEPVPDDP--A--WPVDRDALDACADEVLARMRSATSPVMMVCVEVRRYGLEAKVAELAQRLGVPV 232 (535)
T ss_pred EEEechhhccCc--cCCCCCCC--C--CCCChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccCcHHHHHHHHHHhCCCE
Confidence 999999998743 21111111 1 11111234567899999999999999999999999999999999999999999
Q ss_pred EeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecCCCcc
Q 009060 267 AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSL 346 (545)
Q Consensus 267 ~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~ 346 (545)
+||++|||+||++||+++|++.|..+++..++++++||+||++|+++++..+..+..+.++.++||||.|+.+++ +++.
T Consensus 233 ~tT~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~l~~aDliL~iG~~l~~~~~~~~~~~~~~~~~I~id~~~~~~~-~~~~ 311 (535)
T TIGR03394 233 VTTFMGRGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGVILSDTNFAVSQRKIDLRRTIHAFDRAVTLG-YHVY 311 (535)
T ss_pred EEccccCcCCCCCCccccccccCCCCCHHHHHHHHhCCEEEEECCcccccccccccccCCCCcEEEEeCCEEEEC-CeeE
Confidence 999999999999999999977788899999999999999999999998775533323345678999999999987 4444
Q ss_pred ccccH---HHHHHHHHHHhccCchhhhhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCC--CEEEecCCcccccc
Q 009060 347 GWVFM---ADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGD--TAVIAETGDSWFNC 421 (545)
Q Consensus 347 ~~~d~---~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~ivv~d~G~~~~~~ 421 (545)
.++.+ ...|.+|++.+......+ +.... ............++++.++++.|++.++++ .+++.|+|++.+++
T Consensus 312 ~~~~i~d~~~~L~~l~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~i~p~~~~~~l~~~l~~~~~~ii~~D~G~~~~~~ 388 (535)
T TIGR03394 312 ADIPLAGLVDALLALLCGLPPSDRTT--RGKGP-HAYPRGLQADAEPIAPMDIARAVNDRFARHGQMPLAADIGDCLFTA 388 (535)
T ss_pred CCccHHHHHHHHHHhhhccccccccc--ccccc-cccccccCCCCCCcCHHHHHHHHHHHhCCCCCEEEEEccCHHHHHH
Confidence 55444 444555444332111110 11000 000000012234699999999999999876 46899999987666
Q ss_pred ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhh
Q 009060 422 QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVE 501 (545)
Q Consensus 422 ~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~ 501 (545)
..+. +.+++.+.++|+|||++|+|||+++|.+ +++|+++|||||+|++|||+|++||++|+++||+||++|++.+.
T Consensus 389 ~~~~---~~~~~~~~~~g~mG~glpaaiGa~lA~~-~r~v~i~GDG~f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~ 464 (535)
T TIGR03394 389 MDMD---DAGLMAPGYYAGMGFGVPAGIGAQCTSG-KRILTLVGDGAFQMTGWELGNCRRLGIDPIVILFNNASWEMLRV 464 (535)
T ss_pred HhcC---CCcEECcCccchhhhHHHHHHHHHhCCC-CCeEEEEeChHHHhHHHHHHHHHHcCCCcEEEEEECCccceeeh
Confidence 4442 3568888999999999999999999975 55688999999999999999999999999999999999998433
Q ss_pred hcC-CCCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 502 IHD-GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 502 ~~~-~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
.+. ..+.+++++||+++|++||++ +.+|++.+||
T Consensus 465 ~~~~~~~~~~~~~d~~~lA~a~G~~-----~~~v~~~~eL 499 (535)
T TIGR03394 465 FQPESAFNDLDDWRFADMAAGMGGD-----GVRVRTRAEL 499 (535)
T ss_pred hccCCCcccCCCCCHHHHHHHcCCC-----ceEeCCHHHH
Confidence 332 245677789999999999997 5688888776
No 21
>PLN02470 acetolactate synthase
Probab=100.00 E-value=4.8e-91 Score=761.41 Aligned_cols=498 Identities=19% Similarity=0.248 Sum_probs=407.2
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHH
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (545)
..|+++|+|++.|+++||+||||+||+++++|+++|.+.++|++|.+|||++|+|||+||+|+|| +|||++|+|||++|
T Consensus 11 ~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N 90 (585)
T PLN02470 11 EPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGPGATN 90 (585)
T ss_pred ccccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 34899999999999999999999999999999999976557999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (545)
+++||++||.+++|||+|+|+.++...+++ .+| ..||..+++++|||+.++.+++++++.+++|++.|.++
T Consensus 91 ~l~gia~A~~~~~Pvl~I~G~~~~~~~~~~-----~~q---~~d~~~l~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~ 162 (585)
T PLN02470 91 LVTGLADALLDSVPLVAITGQVPRRMIGTD-----AFQ---ETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGR 162 (585)
T ss_pred HHHHHHHHHhcCCcEEEEecCCChhhcCCC-----cCc---ccchhhhhhhheEEEEEcCCHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998866654 233 25789999999999999999999999999999999996
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHh
Q 009060 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (545)
Q Consensus 183 ~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~ 262 (545)
+|||||+||.|++..+.......+.+...........++++.+++++++|.+||||+|++|.|+. ++.++|++|+|++
T Consensus 163 ~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~A~rPvI~~G~g~~--~a~~~l~~lae~~ 240 (585)
T PLN02470 163 PGPVLVDIPKDIQQQLAVPNWNQPMKLPGYLSRLPKPPEKSQLEQIVRLISESKRPVVYVGGGCL--NSSEELREFVELT 240 (585)
T ss_pred CCeEEEEecCchhhhhccccccccccccccCCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCChh--hhHHHHHHHHHHh
Confidence 69999999999986421110001111000000001123466899999999999999999999987 4789999999999
Q ss_pred CCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecC
Q 009060 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (545)
Q Consensus 263 ~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (545)
++||+||+++||.||++||+++|.+ |..+.+.+++++++||+||+||+++++..+..+..+.+..++||||.|+.+++
T Consensus 241 ~~pv~tt~~gkg~~~~~hpl~~G~~-G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~- 318 (585)
T PLN02470 241 GIPVASTLMGLGAFPASDELSLQML-GMHGTVYANYAVDSADLLLAFGVRFDDRVTGKLEAFASRASIVHIDIDPAEIG- 318 (585)
T ss_pred CCCEEEccCccccCCCCCcccccCC-CCCCCHHHHHHHHhCCEEEEECCCCcccccCChhhcCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999986 78888889999999999999999998887655554556678999999999997
Q ss_pred CCcccc----ccHHHHHHHHHHHhccCc---hhhhhhh----hhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEE
Q 009060 343 GPSLGW----VFMADFLSALAKKLRKNT---TALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (545)
Q Consensus 343 ~~~~~~----~d~~~~l~~L~~~l~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv 411 (545)
+++..+ .|++.+|++|++.+.... ..+..|. +.+..... .......++++.++++.|++.+|+|++++
T Consensus 319 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~l~~~~~~d~iv~ 397 (585)
T PLN02470 319 KNKQPHVSVCADVKLALQGLNKLLEERKAKRPDFSAWRAELDEQKEKFPL-SYPTFGDAIPPQYAIQVLDELTDGNAIIS 397 (585)
T ss_pred CCcCCCeEEecCHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHhChh-cccCCCCCcCHHHHHHHHHhhCCCCEEEE
Confidence 333332 489999999998775421 0111221 11100000 00111247999999999999999999999
Q ss_pred ecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEE
Q 009060 412 AETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFL 490 (545)
Q Consensus 412 ~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV 490 (545)
.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|+++||
T Consensus 398 ~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~v~ivV 477 (585)
T PLN02470 398 TGVGQHQMWAAQWYKYKEPRRWLTSGGLGAMGFGLPAAIGAAAANPDAIVVDIDGDGSFIMNIQELATIHVENLPVKIMV 477 (585)
T ss_pred ECCcHHHHHHHHhcccCCCCeEEcCCccccccchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEE
Confidence 9999987654 456666777799999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCchhhhhh----hcCCCC--CCCC--------CCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 491 INNGGYTIEVE----IHDGPY--NVIK--------NWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 491 ~NN~~~g~~~~----~~~~~~--~~l~--------~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+||++|++.+. .++..+ ..+. .+||+++|++||++ +.+|++.+|+
T Consensus 478 ~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~-----~~~v~~~~el 536 (585)
T PLN02470 478 LNNQHLGMVVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIP-----AARVTRKSDL 536 (585)
T ss_pred EeCCcchHHHHHHHHHhCCceeeeecCccccccCCCCCHHHHHHHCCCe-----EEEECCHHHH
Confidence 99999998321 222211 1121 38999999999996 6789998886
No 22
>PRK08322 acetolactate synthase; Reviewed
Probab=100.00 E-value=5.3e-91 Score=758.04 Aligned_cols=491 Identities=20% Similarity=0.267 Sum_probs=408.2
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHH
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (545)
|+++++|++.|+++||+||||+||+++++|++++.+ ++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|++
T Consensus 1 m~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~-~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~ 79 (547)
T PRK08322 1 MKAADLFVKCLENEGVEYIFGIPGEENLDLLEALRD-SSIKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLV 79 (547)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHh-cCCcEEEeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHH
Confidence 689999999999999999999999999999999964 68999999999999999999999999 9999999999999999
Q ss_pred HHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-CC
Q 009060 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (545)
Q Consensus 106 ~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~G 184 (545)
+||++||.+++|||+|+|++++...+++ .+ |..||.++|+++|||+.++++++++++.+++|++.|+++ +|
T Consensus 80 ~~i~~A~~~~~Pll~i~g~~~~~~~~~~-----~~---q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~G 151 (547)
T PRK08322 80 TGVAYAQLGGMPMVAITGQKPIKRSKQG-----SF---QIVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPG 151 (547)
T ss_pred HHHHHHhhcCCCEEEEeccccccccCCC-----cc---ccccHHHHhhhheeEEEEeCCHHHHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999998866654 22 235789999999999999999999999999999999996 79
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCC
Q 009060 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (545)
Q Consensus 185 PV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~ 264 (545)
||||+||.|++..+ ... .+.+...... ..++...+++++++|.+||||+|++|.|+.++++.++|.+|||++++
T Consensus 152 PV~l~iP~dv~~~~--~~~-~~~~~~~~~~---~~~~~~~i~~~~~~l~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~ 225 (547)
T PRK08322 152 AVHLELPEDIAAEE--TDG-KPLPRSYSRR---PYASPKAIERAAEAIQAAKNPLILIGAGANRKTASKALTEFVDKTGI 225 (547)
T ss_pred cEEEEcChhhhhCc--ccc-ccccccCCCC---CCCCHHHHHHHHHHHHhCCCcEEEECCCcchhcHHHHHHHHHHHhCC
Confidence 99999999997642 211 1111111111 12346679999999999999999999999988899999999999999
Q ss_pred ceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecCCC
Q 009060 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (545)
Q Consensus 265 Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~ 344 (545)
||+||++|||.||++||+++|.+ |..+.+.+++++++||+||++|+++.++.+..|. ..++.++||||.|+.+++ +.
T Consensus 226 pv~tt~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~l~~aDlil~lG~~l~~~~~~~~~-~~~~~~~i~id~d~~~~~-~~ 302 (547)
T PRK08322 226 PFFTTQMGKGVIPETHPLSLGTA-GLSQGDYVHCAIEHADLIINVGHDVIEKPPFFMN-PNGDKKVIHINFLPAEVD-PV 302 (547)
T ss_pred CEEEccccCCcCCCCCchhccCC-CCCCCHHHHHHHHhCCEEEEECCCCccccccccC-CCCCCeEEEEeCCHHHcC-CC
Confidence 99999999999999999999985 7778888899999999999999999877665554 234568999999999886 33
Q ss_pred cccc----ccHHHHHHHHHHHhccCch----hhhhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCc
Q 009060 345 SLGW----VFMADFLSALAKKLRKNTT----ALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGD 416 (545)
Q Consensus 345 ~~~~----~d~~~~l~~L~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~ 416 (545)
...+ .|++.+|++|.+.++.+.. ++..+++...............++++.++++.|++.+|++++++.|+|+
T Consensus 303 ~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ii~~d~G~ 382 (547)
T PRK08322 303 YFPQVEVVGDIANSLWQLKERLADQPHWDFPRFLKIREAIEAHLEEGADDDRFPMKPQRIVADLRKVMPDDDIVILDNGA 382 (547)
T ss_pred cCCCeEEecCHHHHHHHHHHhccccccccHHHHHHHHHHHHHhhhhcccCCCCCcCHHHHHHHHHHHCCCCeEEEECCcH
Confidence 3222 4899999999987753221 1222222111100000111234689999999999999999999999999
Q ss_pred cccccc-cccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCc
Q 009060 417 SWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGG 495 (545)
Q Consensus 417 ~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~ 495 (545)
+..|.. ++...++.+++.+.++|+|||++|+|||+++++|+|+||+++|||||+|+++||+|++||++|+++||+||++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iiV~NN~~ 462 (547)
T PRK08322 383 YKIWFARNYRAYEPNTCLLDNALATMGAGLPSAIAAKLVHPDRKVLAVCGDGGFMMNSQELETAVRLGLPLVVLILNDNA 462 (547)
T ss_pred HHHHHHHhcccCCCCCEEcCCCcccccchhHHHHHHHHhCCCCcEEEEEcchhHhccHHHHHHHHHhCCCeEEEEEeCCC
Confidence 876643 4555666679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhh----hcCC-CCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 496 YTIEVE----IHDG-PYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 496 ~g~~~~----~~~~-~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
|++.+. .+.. .+.+++++||+++|++||++ +.+|++.+||
T Consensus 463 ~g~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~-----~~~v~~~~eL 507 (547)
T PRK08322 463 YGMIRWKQENMGFEDFGLDFGNPDFVKYAESYGAK-----GYRVESADDL 507 (547)
T ss_pred cchHHHHHHhhcCCcccccCCCCCHHHHHHHCCCe-----EEEeCCHHHH
Confidence 998321 1221 23456779999999999996 6789988876
No 23
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=100.00 E-value=1.2e-90 Score=757.74 Aligned_cols=500 Identities=21% Similarity=0.254 Sum_probs=408.1
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCc
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTV 99 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~---~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~Gp 99 (545)
-+.++++++|++.|+++||++|||+||+++++|+|+|.+. ++|++|.+|||++|+|||+||+|+|| ++||++|+||
T Consensus 7 ~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~d~l~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GP 86 (585)
T CHL00099 7 LREKTGAFALIDSLVRHGVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYARSTGKVGVCFATSGP 86 (585)
T ss_pred cccccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCcCCCceEEEecCHHHHHHHHHHHHHhcCCcEEEEECCCC
Confidence 3558999999999999999999999999999999999642 25999999999999999999999999 9999999999
Q ss_pred chHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHh
Q 009060 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTA 179 (545)
Q Consensus 100 G~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a 179 (545)
|++|+++||++||.+++|||+|+|+.++...+++ .+| ..||..+++++|||+.++.+++++++.++|||+.|
T Consensus 87 G~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~q---~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A 158 (585)
T CHL00099 87 GATNLVTGIATAQMDSVPLLVITGQVGRAFIGTD-----AFQ---EVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIA 158 (585)
T ss_pred cHHHHHHHHHHHhhcCCCEEEEecCCCccccCCC-----Ccc---ccchhhhhcCceeEEEEeCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988766554 233 25788999999999999999999999999999999
Q ss_pred hhC-CCcEEEEeCCCCCCCCCCCCCCCCCC--cccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHH
Q 009060 180 LKE-SKPVYISISCNLPGIPHPTFARDPVP--FFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFI 256 (545)
Q Consensus 180 ~~~-~GPV~l~iP~dv~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~ 256 (545)
.++ ||||||+||.|++..+.+.....+.. ...........++++.+++++++|.+||||+|++|.|+.++++.++|+
T Consensus 159 ~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~ 238 (585)
T CHL00099 159 KHGRPGPVLIDIPKDVGLEKFDYYPPEPGNTIIKILGCRPIYKPTIKRIEQAAKLILQSSQPLLYVGGGAIISDAHQEIT 238 (585)
T ss_pred ccCCCCeEEEecChhhhhhhcccccccccccccccccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCCchhchHHHHH
Confidence 985 79999999999976322111111100 001110111123566899999999999999999999999889999999
Q ss_pred HHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCC
Q 009060 257 ELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPH 336 (545)
Q Consensus 257 ~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d 336 (545)
+|+|++|+||+||+++||.||++||+++|.+ |..+...+++++++||+||++|+++++..+..+..+.++.++||||.|
T Consensus 239 ~lae~lg~PV~tt~~~kg~~~~~hpl~~G~~-G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d 317 (585)
T CHL00099 239 ELAELYKIPVTTTLMGKGIFDEDHPLCLGML-GMHGTAYANFAVSECDLLIALGARFDDRVTGKLDEFACNAQVIHIDID 317 (585)
T ss_pred HHHHHHCCCEEEccccCcCCCCCCCcccCCC-CCCCCHHHHHHHHhCCEEEEECCCCcccccCCHhHcCCCCeEEEEECC
Confidence 9999999999999999999999999999986 788888899999999999999999988876655445567789999999
Q ss_pred cceecCCCcccc----ccHHHHHHHHHHHhccCc--------hhhh-hhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhh
Q 009060 337 RVTVGNGPSLGW----VFMADFLSALAKKLRKNT--------TALE-NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDM 403 (545)
Q Consensus 337 ~~~~~~~~~~~~----~d~~~~l~~L~~~l~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (545)
+.+++ +++..+ .|++.+|++|++.+..+. ..|. .+++.+ ............++++.++++.|++.
T Consensus 318 ~~~i~-~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~l~~~ 395 (585)
T CHL00099 318 PAEIG-KNRIPQVAIVGDVKKVLQELLELLKNSPNLLESEQTQAWRERINRWR-KEYPLLIPKPSTSLSPQEVINEISQL 395 (585)
T ss_pred HHHhC-CCCCCCeEEecCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHH-HhChhhccccCCCcCHHHHHHHHHhh
Confidence 99887 333332 489999999998775321 1121 111111 00000001123579999999999999
Q ss_pred CCCCCEEEecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhC
Q 009060 404 LSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCG 483 (545)
Q Consensus 404 l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~ 483 (545)
+| |++++.|+|++..|...+...++.+|+.+.++|+|||++|+|||+++++|+|+||+|+|||||+|++|||+|++||+
T Consensus 396 ~~-d~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGaala~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~ 474 (585)
T CHL00099 396 AP-DAYFTTDVGQHQMWAAQFLKCKPRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICISGDASFQMNLQELGTIAQYN 474 (585)
T ss_pred CC-CeEEEECCcHHHHHHHHhccCCCCcEEcCccccchhhhHHHHHHHHHhCCCCeEEEEEcchhhhhhHHHHHHHHHhC
Confidence 99 89999999998776544333345679989999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCchhhhh----hhcCCCCC----CCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 484 QRSIIFLINNGGYTIEV----EIHDGPYN----VIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 484 lpi~ivV~NN~~~g~~~----~~~~~~~~----~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+|+++||+||++|++.+ ..++..+. ..+++||.++|++||++ +.+|++.+||
T Consensus 475 l~~~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~G~~-----~~~v~~~~el 534 (585)
T CHL00099 475 LPIKIIIINNKWQGMVRQWQQAFYGERYSHSNMEEGAPDFVKLAEAYGIK-----GLRIKSRKDL 534 (585)
T ss_pred CCeEEEEEECCcchHHHHHHHHhcCCCcccccCCCCCCCHHHHHHHCCCe-----EEEeCCHHHH
Confidence 99999999999999822 12233332 22468999999999996 6789988876
No 24
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=1.1e-90 Score=757.28 Aligned_cols=498 Identities=20% Similarity=0.241 Sum_probs=411.5
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchH
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGL 102 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~ 102 (545)
.+++|++|+|++.|+++||+||||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+|| ++||++|+|||++
T Consensus 13 ~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~ 91 (571)
T PRK07710 13 EKLMTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYD-CGIPHILTRHEQGAIHAAEGYARISGKPGVVIATSGPGAT 91 (571)
T ss_pred cccchHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHh-cCCcEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHH
Confidence 345899999999999999999999999999999999975 48999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC
Q 009060 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (545)
Q Consensus 103 n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (545)
|+++||++||.+++|||+|||++++...+++ .+| ..||..+|+++|||+.++.+++++++.++||++.|.++
T Consensus 92 N~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~-----~~q---~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~ 163 (571)
T PRK07710 92 NVVTGLADAMIDSLPLVVFTGQVATSVIGSD-----AFQ---EADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATTG 163 (571)
T ss_pred HHHHHHHHHhhcCCCEEEEeccCCccccCCC-----Ccc---ccchhhhhhcccceEEecCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998866654 232 35889999999999999999999999999999999986
Q ss_pred -CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHH
Q 009060 183 -SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (545)
Q Consensus 183 -~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~ 261 (545)
||||||+||.|++..+.+.......+.... . +...+++..+++++++|.+||||+|++|.|+.++++.++|++|+|+
T Consensus 164 ~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~i~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~ 241 (571)
T PRK07710 164 RPGPVLIDIPKDMVVEEGEFCYDVQMDLPGY-Q-PNYEPNLLQIRKLVQAVSVAKKPVILAGAGVLHAKASKELTSYAEQ 241 (571)
T ss_pred CCCcEEEEcChhHhhccccccccccccccCC-C-CCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCccchHHHHHHHHHH
Confidence 799999999999864211100000111000 0 1112345678999999999999999999999888899999999999
Q ss_pred hCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceec
Q 009060 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (545)
Q Consensus 262 ~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 341 (545)
+|+||+||+++||.||++||+++|.+ |..+.+.++++++++|+||++|+++++..+..+..+.++.++||||.|+.+++
T Consensus 242 ~~~pv~tt~~~kg~i~~~hpl~~G~~-G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ig 320 (571)
T PRK07710 242 QEIPVVHTLLGLGGFPADHPLFLGMA-GMHGTYTANMALYECDLLINIGARFDDRVTGNLAYFAKEATVAHIDIDPAEIG 320 (571)
T ss_pred hCCCEEEcCccCccCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEeCCCCCccccCchhhcCCCCeEEEEECCHHHhc
Confidence 99999999999999999999999985 88889999999999999999999998877655555566778999999999987
Q ss_pred CCCcccc----ccHHHHHHHHHHHhccCc--hhhh-hhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecC
Q 009060 342 NGPSLGW----VFMADFLSALAKKLRKNT--TALE-NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAET 414 (545)
Q Consensus 342 ~~~~~~~----~d~~~~l~~L~~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~ 414 (545)
+.+..+ .|++.+|++|++.+..+. ..|. .+++.+........ ....++++..+++.|++.+|++++++.|+
T Consensus 321 -~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~iv~~d~ 398 (571)
T PRK07710 321 -KNVPTEIPIVADAKQALQVLLQQEGKKENHHEWLSLLKNWKEKYPLSYK-RNSESIKPQKAIEMLYEITKGEAIVTTDV 398 (571)
T ss_pred -CcCCCCeEEecCHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhChhhhc-CCCCCcCHHHHHHHHHhhCCCCeEEEECC
Confidence 333222 489999999988765321 1221 11111100000001 11346999999999999999999999999
Q ss_pred Ccccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeC
Q 009060 415 GDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINN 493 (545)
Q Consensus 415 G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN 493 (545)
|++..|. .++..+++.+|+.+.++|+|||++|+|||++++.|+|+||+++|||||+|+++||+|++||++|+++||+||
T Consensus 399 g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGaala~p~~~vv~i~GDGsf~m~~~eL~ta~r~~lpi~ivV~NN 478 (571)
T PRK07710 399 GQHQMWAAQYYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAIVGDGGFQMTLQELSVIKELSLPVKVVILNN 478 (571)
T ss_pred cHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHHhCCCeEEEEEEC
Confidence 9987654 456667777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cchhhhhh----hcCCCC--CCC-CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 494 GGYTIEVE----IHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 494 ~~~g~~~~----~~~~~~--~~l-~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
++|++.+. +++..+ .++ +++||+++|++||++ +++|++.+|+
T Consensus 479 ~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~-----~~~v~~~~el 527 (571)
T PRK07710 479 EALGMVRQWQEEFYNQRYSHSLLSCQPDFVKLAEAYGIK-----GVRIDDELEA 527 (571)
T ss_pred chHHHHHHHHHHHhCCcceeccCCCCCCHHHHHHHCCCe-----EEEECCHHHH
Confidence 99998322 223333 233 569999999999996 6789988876
No 25
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=100.00 E-value=1.2e-90 Score=759.44 Aligned_cols=496 Identities=20% Similarity=0.241 Sum_probs=404.4
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-CCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchH
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGL 102 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~-~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~ 102 (545)
|++|++|+|++.|+++||+||||+||+++++|+++|.+. ++|++|.+|||++|+|||+||+|+|| +|||++|+|||++
T Consensus 1 ~~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~ 80 (597)
T PRK08273 1 MSQTVADFILERLREWGVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAI 80 (597)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHH
Confidence 458999999999999999999999999999999999753 46999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhce-eEEEEeCChhhHHHHHHHHHHHhhh
Q 009060 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAIT-CSQAVVNNLGDAHELIDTAISTALK 181 (545)
Q Consensus 103 n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-k~~~~v~~~~~~~~~l~~A~~~a~~ 181 (545)
|+++||++||.+++|||+|+|+.++...+++ .+| ..||..+|+++| ||+.++.+++++++.+++|++.|++
T Consensus 81 n~~~gi~~A~~d~vPvl~I~G~~~~~~~~~~-----~~q---~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~ 152 (597)
T PRK08273 81 HLLNGLYDAKLDHVPVVAIVGQQARAALGGH-----YQQ---EVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALA 152 (597)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCchhhcCCC-----CCC---ccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998876665 233 257889999999 9999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCC--CCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHH
Q 009060 182 ESKPVYISISCNLPGIPHPTFARDP--VPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELA 259 (545)
Q Consensus 182 ~~GPV~l~iP~dv~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~la 259 (545)
++|||||+||.|++..+.+...... .............++++.+++++++|.+||||+|++|.|+. ++.++|.+||
T Consensus 153 ~~gPV~i~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvi~~G~g~~--~a~~~l~~la 230 (597)
T PRK08273 153 ERTVTAVILPNDVQELEYEPPPHAHGTVHSGVGYTRPRVVPYDEDLRRAAEVLNAGRKVAILVGAGAL--GATDEVIAVA 230 (597)
T ss_pred CCCCEEEEeCcchhhCcccCccccccccccccCCCCCCCCCCHHHHHHHHHHHhcCCCEEEEECcchH--hHHHHHHHHH
Confidence 8899999999999863211100000 00000000011123567899999999999999999999996 6899999999
Q ss_pred HHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcce
Q 009060 260 DATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVT 339 (545)
Q Consensus 260 e~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ 339 (545)
|++++||+||++|||.||++||+++|++ |..+++.+++++++||+||+||++++... +....++.++||||.|+.+
T Consensus 231 e~~~~PV~tt~~gkg~~~e~hp~~~G~~-G~~g~~~a~~~~~~aDlvl~lG~~~~~~~---~~~~~~~~~~i~Id~d~~~ 306 (597)
T PRK08273 231 ERLGAGVAKALLGKAALPDDLPWVTGSI-GLLGTKPSYELMRECDTLLMVGSSFPYSE---FLPKEGQARGVQIDIDGRM 306 (597)
T ss_pred HHhCCceeecccCcccCCCCCccceecC-CCCccHHHHHHHHhCCEEEEeCCCCCHHh---cCCCCCCCeEEEEeCCHHH
Confidence 9999999999999999999999999996 88899999999999999999999985321 1111235689999999998
Q ss_pred ecCCCcccc----ccHHHHHHHHHHHhccCc-hhh-hh---hhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEE
Q 009060 340 VGNGPSLGW----VFMADFLSALAKKLRKNT-TAL-EN---YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAV 410 (545)
Q Consensus 340 ~~~~~~~~~----~d~~~~l~~L~~~l~~~~-~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv 410 (545)
++ +.+..+ .|++.+|++|++.+..+. ..| +. +++.+.............++++.++++.|++.+|+|+++
T Consensus 307 ~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~~~iv 385 (597)
T PRK08273 307 LG-LRYPMEVNLVGDAAETLRALLPLLERKKDRSWRERIEKWVARWWETLEARAMVPADPVNPQRVFWELSPRLPDNAIL 385 (597)
T ss_pred cC-CCCCCCceEecCHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhHhhhhhhhcCCCCCcCHHHHHHHHHhhCCCCeEE
Confidence 86 322222 489999999998776432 112 11 111111000000112235799999999999999999999
Q ss_pred EecCCccccc-cccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhccc-HHHHHHHHHh-----C
Q 009060 411 IAETGDSWFN-CQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT-AQEISTMIRC-----G 483 (545)
Q Consensus 411 v~d~G~~~~~-~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~-~~eL~ta~~~-----~ 483 (545)
+.|+|++..| ..++..+++.+++.+.++|+|||++|+|||+++|+|+|+||+|+|||||+|+ +|||+|++|| +
T Consensus 386 v~d~G~~~~~~~~~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~~EL~Ta~r~~~~~~~ 465 (597)
T PRK08273 386 TADSGSCANWYARDLRMRRGMMASLSGTLATMGPAVPYAIAAKFAHPDRPVIALVGDGAMQMNGMAELITVAKYWRQWSD 465 (597)
T ss_pred EECCcHHHHHHHHhCCCCCCCeEEecCccccccchHHHHHHHHHhCCCCcEEEEEcchhHhccchHHHHHHHHHhhcccC
Confidence 9999998755 4456666677799999999999999999999999999999999999999999 6999999999 8
Q ss_pred CCeEEEEEeCCchhhh----hhhcCCC----CCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 484 QRSIIFLINNGGYTIE----VEIHDGP----YNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 484 lpi~ivV~NN~~~g~~----~~~~~~~----~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+|+++||+||++|++. +.++++. +.+++++||+++|++||++ +++|++.+||
T Consensus 466 lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~-----~~~v~~~~eL 525 (597)
T PRK08273 466 PRLIVLVLNNRDLNQVTWEQRVMEGDPKFEASQDLPDVPYARFAELLGLK-----GIRVDDPEQL 525 (597)
T ss_pred CCEEEEEEeCCcchHHHHHHHHhcCCCcccccccCCCCCHHHHHHHCCCE-----EEEECCHHHH
Confidence 9999999999999982 1122221 2356789999999999996 6799998887
No 26
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=2.1e-90 Score=754.40 Aligned_cols=495 Identities=21% Similarity=0.268 Sum_probs=410.7
Q ss_pred CccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHH
Q 009060 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (545)
.+|++++|++.|+++||+||||+||+++++|+++|.++++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|+
T Consensus 12 ~~~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~ 91 (564)
T PRK08155 12 RFTGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNL 91 (564)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHH
Confidence 4799999999999999999999999999999999976668999999999999999999999999 999999999999999
Q ss_pred HHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-C
Q 009060 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (545)
Q Consensus 105 ~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (545)
++||++||.+++|||+|+|+.++...+++ .+| ..||..+++++|||+.++++++++++.+++|++.|+++ +
T Consensus 92 l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~q---~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~ 163 (564)
T PRK08155 92 VTAIADARLDSIPLVCITGQVPASMIGTD-----AFQ---EVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRP 163 (564)
T ss_pred HHHHHHHHhcCCCEEEEeccCCcccccCC-----Ccc---ccchhhhhhccceEEEEcCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998866654 233 25788999999999999999999999999999999986 6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhC
Q 009060 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (545)
Q Consensus 184 GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~ 263 (545)
|||||+||.|++..+.+.. ..+.+. ... ....++++.+++++++|.+||||+|++|.|+.++++.+++++|+|+++
T Consensus 164 GPV~i~iP~Dv~~~~~~~~-~~~~~~--~~~-~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~~ 239 (564)
T PRK08155 164 GPVWIDIPKDVQTAVIELE-ALPAPA--EKD-AAPAFDEESIRDAAAMINAAKRPVLYLGGGVINSGAPARARELAEKAQ 239 (564)
T ss_pred CcEEEEcCHhHHhhhcccc-cCCCcc--ccC-CCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHHHHHHHHC
Confidence 9999999999976422110 111111 000 111234567999999999999999999999998889999999999999
Q ss_pred CceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecCC
Q 009060 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (545)
Q Consensus 264 ~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 343 (545)
+||+||+++||.||++||+++|.+ |..+.+..++++++||+||++|+++++..+..+..+.+..++||||.|+.+++ +
T Consensus 240 ~pv~tt~~~kg~i~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~-~ 317 (564)
T PRK08155 240 LPTTMTLMALGMLPKAHPLSLGML-GMHGARSTNYILQEADLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELG-K 317 (564)
T ss_pred CCEEEcccccccCCCCChhhccCC-CCCCCHHHHHHHHhCCEEEEECCCCCccccCCHhhcCCCCeEEEEECCHHHhC-C
Confidence 999999999999999999999997 77788888999999999999999998887755544556778999999999886 3
Q ss_pred Cccc----cccHHHHHHHHHHHhccCc-hhhh-hhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcc
Q 009060 344 PSLG----WVFMADFLSALAKKLRKNT-TALE-NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS 417 (545)
Q Consensus 344 ~~~~----~~d~~~~l~~L~~~l~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~ 417 (545)
.... ..|++.+|++|++.+..+. ..|. .+...+........ ....++++.++++.|++.+|+|++++.|+|++
T Consensus 318 ~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~v~~~l~~~l~~~~iv~~D~G~~ 396 (564)
T PRK08155 318 IKQPHVAIQADVDDVLAQLLPLVEAQPRAEWHQLVADLQREFPCPIP-KADDPLSHYGLINAVAACVDDNAIITTDVGQH 396 (564)
T ss_pred CcCCCeEEecCHHHHHHHHHHhhcccchHHHHHHHHHHHHhChhhcc-cCCCCcCHHHHHHHHHHhCCCCeEEEECCchH
Confidence 3222 2489999999988775422 1221 11111100000011 11347999999999999999999999999998
Q ss_pred cccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCch
Q 009060 418 WFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGY 496 (545)
Q Consensus 418 ~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~~ 496 (545)
..|. .++..+++.+|+.+.++|+|||++|+|||++++.|+|+||+++|||||+|+++||+|++||++|+++||+||++|
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~~~~~eL~ta~~~~lpvi~vV~NN~~~ 476 (564)
T PRK08155 397 QMWTAQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGSLMMNIQEMATAAENQLDVKIILMNNEAL 476 (564)
T ss_pred HHHHHHhccccCCCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCcc
Confidence 7653 456667777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh----hhcCCCC--CCC-CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 497 TIEV----EIHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 497 g~~~----~~~~~~~--~~l-~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
++.+ .++...+ .++ +++||+++|++||++ +.+|++++|+
T Consensus 477 g~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~el 522 (564)
T PRK08155 477 GLVHQQQSLFYGQRVFAATYPGKINFMQIAAGFGLE-----TCDLNNEADP 522 (564)
T ss_pred cccHHHHHHhcCCCeeeccCCCCCCHHHHHHHCCCe-----EEEeCCHHHH
Confidence 9821 2222222 233 569999999999996 6789888876
No 27
>PRK08617 acetolactate synthase; Reviewed
Probab=100.00 E-value=1.8e-90 Score=753.75 Aligned_cols=493 Identities=20% Similarity=0.228 Sum_probs=406.8
Q ss_pred CccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHH
Q 009060 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (545)
.||++++|++.|+++||++|||+||+++++|++++.+ ++|++|.+|||++|+|||+||+|+|| +|||++|+|||++|+
T Consensus 4 ~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~-~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~ 82 (552)
T PRK08617 4 KKYGADLVVDSLINQGVKYVFGIPGAKIDRVFDALED-SGPELIVTRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNL 82 (552)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhh-CCCCEEEeccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHh
Confidence 4799999999999999999999999999999999975 58999999999999999999999999 999999999999999
Q ss_pred HHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-C
Q 009060 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (545)
Q Consensus 105 ~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (545)
++||++||.+++|||+|+|+.++...+++ .+| .+||.++|+++|||+.++++++++++.+++|++.|.++ |
T Consensus 83 l~gl~~A~~~~~PvlvisG~~~~~~~~~~-----~~q---~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~ 154 (552)
T PRK08617 83 ATGLVTATAEGDPVVAIGGQVKRADRLKR-----THQ---SMDNVALFRPITKYSAEVQDPDNLSEVLANAFRAAESGRP 154 (552)
T ss_pred HHHHHHHhhcCCCEEEEecCCcccccCCC-----Ccc---ccchhhhhhhhcceEEEeCCHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999998866654 222 35889999999999999999999999999999999996 7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhC
Q 009060 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (545)
Q Consensus 184 GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~ 263 (545)
|||||+||.|++..+ .......+. ..+ ....+++..+++++++|.+||||+|++|.|++++++.+++++|+|++|
T Consensus 155 GPV~l~iP~dv~~~~--~~~~~~~~~-~~~--~~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~ 229 (552)
T PRK08617 155 GAAFVSLPQDVVDAP--VTSKAIAPL-SKP--KLGPASPEDINYLAELIKNAKLPVLLLGMRASSPEVTAAIRRLLERTN 229 (552)
T ss_pred CcEEEeChhhhhhcc--ccccccccc-cCC--CCCCCCHHHHHHHHHHHHhCCCCEEEECCCcchhhHHHHHHHHHHHhC
Confidence 999999999998743 211111111 111 111224567899999999999999999999998889999999999999
Q ss_pred CceEeCCCCccCCCCCCC-CccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecC
Q 009060 264 YPIAIMPSGKGLVPEHHP-HFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (545)
Q Consensus 264 ~Pv~tt~~~kg~~~~~hp-l~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (545)
+||+||++|||.||++|| +++|.+ |..+.+.+++++++||+||++|+++.++....|... ++.++||||.|+.+++
T Consensus 230 ~pV~tt~~gkg~~~~~hp~~~~G~~-g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~- 306 (552)
T PRK08617 230 LPVVETFQAAGVISRELEDHFFGRV-GLFRNQPGDELLKKADLVITIGYDPIEYEPRNWNSE-GDATIIHIDVLPAEID- 306 (552)
T ss_pred CCEEeccccCccCCCCCchhhccCC-cCCCcHHHHHHHHhCCEEEEecCccccccccccccC-CCCcEEEEeCChHHhC-
Confidence 999999999999999998 699985 777888889999999999999999876665545422 3568999999999987
Q ss_pred CCcccc----ccHHHHHHHHHHHhccCc------hhhhhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEe
Q 009060 343 GPSLGW----VFMADFLSALAKKLRKNT------TALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIA 412 (545)
Q Consensus 343 ~~~~~~----~d~~~~l~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~ 412 (545)
.++..+ .|++.+|++|++.++... .+.+.|++.+.............++++.++++.|++.++++++++.
T Consensus 307 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii~~ 386 (552)
T PRK08617 307 NYYQPERELIGDIAATLDLLAEKLDGLSLSPQSLEILEELRAQLEELAERPARLEEGAVHPLRIIRALQDIVTDDTTVTV 386 (552)
T ss_pred CccCCCeEEeCCHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHhhhhhcccCCCCcCHHHHHHHHHHhcCCCcEEEe
Confidence 333332 489999999988775321 1112232211110000111223569999999999999999999999
Q ss_pred cCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEE
Q 009060 413 ETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLI 491 (545)
Q Consensus 413 d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~ 491 (545)
|+|++..|. .++...++.+++.+.++|+|||++|+|||+++++|+|+||+++|||||+|++|||+|+++|++|+++||+
T Consensus 387 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~~vV~ 466 (552)
T PRK08617 387 DVGSHYIWMARYFRSYEPRHLLFSNGMQTLGVALPWAIAAALVRPGKKVVSVSGDGGFLFSAMELETAVRLKLNIVHIIW 466 (552)
T ss_pred CCcHHHHHHHHhccccCCCeEEecCccccccccccHHHhhHhhcCCCcEEEEEechHHhhhHHHHHHHHHhCCCeEEEEE
Confidence 999987654 3455556667888889999999999999999999999999999999999999999999999999999999
Q ss_pred eCCchhhhhh----hcCC-CCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 492 NNGGYTIEVE----IHDG-PYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 492 NN~~~g~~~~----~~~~-~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
||++|++.+. .+.. ...+++++||+++|++||++ +++|++++||
T Consensus 467 NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~-----~~~v~~~~eL 515 (552)
T PRK08617 467 NDGHYNMVEFQEEMKYGRSSGVDFGPVDFVKYAESFGAK-----GLRVTSPDEL 515 (552)
T ss_pred ECCccchHHHHHHhhcCCcccCCCCCCCHHHHHHHCCCe-----EEEECCHHHH
Confidence 9999998321 1221 12355789999999999996 6789998876
No 28
>PRK08611 pyruvate oxidase; Provisional
Probab=100.00 E-value=3.9e-90 Score=752.32 Aligned_cols=492 Identities=21% Similarity=0.317 Sum_probs=404.3
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-CCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcch
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGG 101 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~-~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~ 101 (545)
|..+|++++|++.|+++||+||||+||+++++|++++.+. ++|++|.+|||++|+|||+||+|+|| ++||++|+|||+
T Consensus 1 ~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~ 80 (576)
T PRK08611 1 MAKIKAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKLTGKIGVCLSIGGPGA 80 (576)
T ss_pred CCCCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCcH
Confidence 4468999999999999999999999999999999999653 57999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhh
Q 009060 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK 181 (545)
Q Consensus 102 ~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~ 181 (545)
+|+++||++||.+++|||+|+|++++...+++ .+| ..||.++|+++|||+.++++++++++.+++|++.|.+
T Consensus 81 ~N~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~-----~~q---~~d~~~l~~~itk~~~~v~~~~~~~~~l~~A~~~A~~ 152 (576)
T PRK08611 81 IHLLNGLYDAKMDHVPVLALAGQVTSDLLGTD-----FFQ---EVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYE 152 (576)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCcccccCCC-----Ccc---ccCHHHHhhcccceeEEeCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998876665 232 3578999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHH
Q 009060 182 ESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (545)
Q Consensus 182 ~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~ 261 (545)
++|||||+||.|++..+.+.....+.+. ..+ ....++++.+++++++|++||||+|++|.|++ ++.+++++|+|+
T Consensus 153 ~~GPV~l~iP~Dv~~~~~~~~~~~~~~~-~~~--~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~ 227 (576)
T PRK08611 153 KKGVAVLTIPDDLPAQKIKDTTNKTVDT-FRP--TVPSPKPKDIKKAAKLINKAKKPVILAGLGAK--HAKEELLAFAEK 227 (576)
T ss_pred CCCCEEEEeChhhhhccccccccccccc-CCC--CCCCCCHHHHHHHHHHHHcCCCcEEEECcCcc--hHHHHHHHHHHH
Confidence 8999999999999874321100000111 111 11123566789999999999999999999987 477999999999
Q ss_pred hCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceec
Q 009060 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (545)
Q Consensus 262 ~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 341 (545)
+|+||+||+++||+||++||+++|.+ |..+++.++++++++|+||+||++++... | +.++.++||||.|+.+++
T Consensus 228 ~~~PV~tt~~gkg~~~~~hp~~~G~~-g~~~~~~a~~~l~~aDlvl~iG~~~~~~~---~--~~~~~~~i~id~d~~~i~ 301 (576)
T PRK08611 228 AKIPIIHTLPAKGIIPDDHPYSLGNL-GKIGTKPAYEAMQEADLLIMVGTNYPYVD---Y--LPKKAKAIQIDTDPANIG 301 (576)
T ss_pred hCCCEEEccccccccCCCCccccccC-CCCCcHHHHHHHHhCCEEEEeCCCCCccc---c--CCCCCcEEEEeCCHHHcC
Confidence 99999999999999999999999986 77888888999999999999999875332 1 223468999999999987
Q ss_pred CCCcccc----ccHHHHHHHHHHHhccCch-hh-hhh---hhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEe
Q 009060 342 NGPSLGW----VFMADFLSALAKKLRKNTT-AL-ENY---RRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIA 412 (545)
Q Consensus 342 ~~~~~~~----~d~~~~l~~L~~~l~~~~~-~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~ 412 (545)
+.+..+ .|++.+|++|.+.+..+.. .| +.+ ++...............++++.++++.|++.+|++++++.
T Consensus 302 -~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~l~~~~ivv~ 380 (576)
T PRK08611 302 -KRYPVNVGLVGDAKKALHQLTENIKHVEDRRFLEACQENMAKWWKWMEEDENNASTPIKPERVMAAIQKIADDDAVLSV 380 (576)
T ss_pred -CccCCCeeEecCHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHhhhcCCCeEEEE
Confidence 333222 4899999999998754321 12 111 1111000000011233569999999999999999999999
Q ss_pred cCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEE
Q 009060 413 ETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLI 491 (545)
Q Consensus 413 d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~ 491 (545)
|+|++..|. .++..+++.+|+.+.++|+|||++|+|||++++.|+|+||+++|||||+|++|||+|++||++|+++||+
T Consensus 381 d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~r~~l~~iivV~ 460 (576)
T PRK08611 381 DVGTVTVWSARYLNLGTNQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGGFSMVMQDFVTAVKYKLPIVVVVL 460 (576)
T ss_pred cChHHHHHHHhcCCcCCCCeEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcccHHhhhHHHHHHHHHhCCCeEEEEE
Confidence 999997664 4556666777898889999999999999999999999999999999999999999999999999999999
Q ss_pred eCCchhhhhh---hcCC-CC-CCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 492 NNGGYTIEVE---IHDG-PY-NVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 492 NN~~~g~~~~---~~~~-~~-~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
||++|++.+. .... .+ .+++++||+++|++||++ +++|++.+||
T Consensus 461 NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~-----~~~v~~~~eL 509 (576)
T PRK08611 461 NNQQLAFIKYEQQAAGELEYAIDLSDMDYAKFAEACGGK-----GYRVEKAEEL 509 (576)
T ss_pred eCCcchHHHHHHHHhcCCcccccCCCCCHHHHHHHCCCe-----EEEeCCHHHH
Confidence 9999998321 1111 22 456789999999999995 6799998876
No 29
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=4.6e-90 Score=753.84 Aligned_cols=501 Identities=20% Similarity=0.252 Sum_probs=410.5
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchH
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGL 102 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~ 102 (545)
|.++|++++|++.|+++||+||||+||+++++|++++.++++|++|.+|||++|+|||+||+|+|| ++||++|+|||++
T Consensus 1 ~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~ 80 (574)
T PRK06882 1 MKKLSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYARSTGKVGCVLVTSGPGAT 80 (574)
T ss_pred CCcccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCCeEEEeccHHHHHHHHHHHHHhhCCCeEEEECCCccHH
Confidence 345899999999999999999999999999999999976558999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC
Q 009060 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (545)
Q Consensus 103 n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (545)
|+++||++||.+++|||+|+|++++...+++ .+| ..||..+++++|||+.++++++++++.++||++.|.++
T Consensus 81 N~l~~i~~A~~~~~Pvlvi~G~~~~~~~~~~-----~~q---~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~A~~~ 152 (574)
T PRK06882 81 NAITGIATAYTDSVPLVILSGQVPSNLIGTD-----AFQ---ECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYIASTG 152 (574)
T ss_pred HHHHHHHHHhhcCCCEEEEecCCCccccCCC-----ccc---ccchhhhhhcccceEEEeCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998866654 233 35789999999999999999999999999999999985
Q ss_pred -CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHH
Q 009060 183 -SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (545)
Q Consensus 183 -~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~ 261 (545)
+|||||+||.|++....+.....+.+....+..+....++..+++++++|.+||||+|++|.|+.++++.++|++|+|+
T Consensus 153 ~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~ 232 (574)
T PRK06882 153 RPGPVVIDIPKDMVNPANKFTYEYPEEVSLRSYNPTVQGHKGQIKKALKALLVAKKPVLFVGGGVITAECSEQLTQFAQK 232 (574)
T ss_pred CCCCEEEecCHHHhhhhcccccccCcccccccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHHHHHHH
Confidence 7999999999997632110000010000000001011246679999999999999999999999988999999999999
Q ss_pred hCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceec
Q 009060 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (545)
Q Consensus 262 ~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 341 (545)
+++||+||++|||+||++||+++|++ |..++..+++++++||+||+||++++++.+..|..+.++.++||||.|+.+++
T Consensus 233 ~~~pv~tt~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~ 311 (574)
T PRK06882 233 LNLPVTSSLMGLGAYPSTDKQFLGML-GMHGTYEANNAMHESDLILGIGVRFDDRTTNNLAKYCPNAKVIHIDIDPTSIS 311 (574)
T ss_pred hCCCEEEcCccCcCCCCCChhhcCCC-cccccHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhc
Confidence 99999999999999999999999986 88888899999999999999999998888766655556678999999999886
Q ss_pred CCCcccc----ccHHHHHHHHHHHhccCc-----hhhhhhh----hhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCC
Q 009060 342 NGPSLGW----VFMADFLSALAKKLRKNT-----TALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDT 408 (545)
Q Consensus 342 ~~~~~~~----~d~~~~l~~L~~~l~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 408 (545)
+.+..+ .|++.+|++|.+.+..+. ..+..|. +.+....... .....++++..+++.|++.+++++
T Consensus 312 -~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~l~~~l~~~~ 389 (574)
T PRK06882 312 -KNVPAYIPIVGSAKNVLEEFLSLLEEENLAKSQTDLTAWWQQINEWKAKKCLEF-DRTSDVIKPQQVVEAIYRLTNGDA 389 (574)
T ss_pred -CccCCceEEecCHHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHhChhhh-ccCCCCcCHHHHHHHHHhhcCCCe
Confidence 332222 489999999988774321 1111221 1110100000 111346999999999999999999
Q ss_pred EEEecCCccccc-cccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeE
Q 009060 409 AVIAETGDSWFN-CQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSI 487 (545)
Q Consensus 409 ivv~d~G~~~~~-~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ 487 (545)
+++.|+|++..| ..++..+.+.+|+.++++|+|||++|+|||++++.|+++||+++|||||+|+++||+|++||++|++
T Consensus 390 ii~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~lpv~ 469 (574)
T PRK06882 390 YVASDVGQHQMFAALHYPFDKPRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCVTGDGSIQMNIQELSTAKQYDIPVV 469 (574)
T ss_pred EEEecCchhHHHHHHhccccCCCcEEeCCCcccccchhHHHHHHHhhcCCCcEEEEEcchhhhccHHHHHHHHHhCCCeE
Confidence 999999998655 4456666677799889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCchhhhh----hhcCCCCC--CC-CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 488 IFLINNGGYTIEV----EIHDGPYN--VI-KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 488 ivV~NN~~~g~~~----~~~~~~~~--~l-~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+||+||++|++.+ .++++.+. .+ +.+||.++|++||++ +++|++.+||
T Consensus 470 ~vV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~la~a~G~~-----~~~v~~~~eL 524 (574)
T PRK06882 470 IVSLNNRFLGMVKQWQDLIYSGRHSQVYMNSLPDFAKLAEAYGHV-----GIQIDTPDEL 524 (574)
T ss_pred EEEEECchhHHHHHHHHHhcCCcccccCCCCCCCHHHHHHHCCCe-----EEEeCCHHHH
Confidence 9999999999822 22233221 22 458999999999996 6789988876
No 30
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=100.00 E-value=4.4e-90 Score=748.56 Aligned_cols=490 Identities=19% Similarity=0.243 Sum_probs=403.7
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHHHH
Q 009060 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNA 107 (545)
Q Consensus 29 ~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~ 107 (545)
++++|++.|+++||+||||+||+++++|++++.+ ++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|+++|
T Consensus 1 ~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~-~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~g 79 (539)
T TIGR02418 1 GADLVVDQLENQGVRYVFGIPGAKIDRVFDALED-KGIELIVVRHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTG 79 (539)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhh-CCCCEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHH
Confidence 4799999999999999999999999999999965 58999999999999999999999999 999999999999999999
Q ss_pred HHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-CCcE
Q 009060 108 IAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SKPV 186 (545)
Q Consensus 108 l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~GPV 186 (545)
|++||.+++|||+|+|+.++...+++ .+ |..||..+|+++|||+.++.+++++++.++||++.|.++ ||||
T Consensus 80 l~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~---q~~d~~~~~~~~tk~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV 151 (539)
T TIGR02418 80 LATANSEGDPVVAIGGQVKRADLLKL-----TH---QSMDNVALFRPITKYSAEVQDPDALSEVVANAFRAAESGKPGAA 151 (539)
T ss_pred HHHHhhcCCCEEEEeCCCcccccccC-----cc---cccchhhhhhcceeeeeecCCHHHHHHHHHHHHHHHhcCCCCCE
Confidence 99999999999999999888765554 22 235789999999999999999999999999999999986 7999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCce
Q 009060 187 YISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (545)
Q Consensus 187 ~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv 266 (545)
||+||.|++.. +.... ..+....+.. ..++...+++++++|.+||||+|++|.|+.++++.+++++|+|++|+||
T Consensus 152 ~l~iP~dv~~~--~~~~~-~~~~~~~~~~--~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~g~pv 226 (539)
T TIGR02418 152 FVSLPQDVVDS--PVSVK-AIPASYAPKL--GAAPDDAIDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPV 226 (539)
T ss_pred EEEcChhHhhC--ccccc-ccCcccCCCC--CCCCHHHHHHHHHHHHcCCCCEEEECCCcCcccHHHHHHHHHHHhCCCE
Confidence 99999999874 32211 1110011111 1224557899999999999999999999999999999999999999999
Q ss_pred EeCCCCccCCCCCC-CCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecCCCc
Q 009060 267 AIMPSGKGLVPEHH-PHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPS 345 (545)
Q Consensus 267 ~tt~~~kg~~~~~h-pl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~ 345 (545)
++|++|||.||++| |+++|++ |..+++.+++++++||+||++|+++.++.+..|.. .++.++||||.|+.+++ +.+
T Consensus 227 ~tt~~gkg~i~~~~~~~~~G~~-G~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~-~~~ 303 (539)
T TIGR02418 227 VETFQGAGAVSRELEDHFFGRV-GLFRNQPGDRLLKQADLVITIGYDPIEYEPRNWNS-ENDATIVHIDVEPAQID-NNY 303 (539)
T ss_pred EEccccCcCCCCCCChhhcccC-cCCCcHHHHHHHHhCCEEEEecCcccccCccccCc-CCCCeEEEEeCChHHcC-Ccc
Confidence 99999999999997 7899985 88888888999999999999999988776655542 23468999999999987 333
Q ss_pred ccc----ccHHHHHHHHHHHhccCc--h---hh-hhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCC
Q 009060 346 LGW----VFMADFLSALAKKLRKNT--T---AL-ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415 (545)
Q Consensus 346 ~~~----~d~~~~l~~L~~~l~~~~--~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G 415 (545)
..+ .|++.+|++|.+.++... . .| +.+++.+.............++++.++++.|++.++++++++.|+|
T Consensus 304 ~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii~~d~G 383 (539)
T TIGR02418 304 QPDLELVGDIASTLDLLAERIPGYELPPDALAILEDLKQQREALDRVPATLKQAHLHPLEIIKAMQAIVTDDVTVTVDMG 383 (539)
T ss_pred CCCeEEecCHHHHHHHHHHhhccccCccchHHHHHHHHHHHHHhhhccccCCCCCcCHHHHHHHHHhhCCCCCEEEECCc
Confidence 222 489999999998775421 1 11 1221111000000001123469999999999999999999999999
Q ss_pred cccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCC
Q 009060 416 DSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNG 494 (545)
Q Consensus 416 ~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~ 494 (545)
++..|. .++....+.+++.+.++|+|||++|+|||++++.|+|+||+++|||||+|++|||+|++||++|+++||+||+
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpi~ivV~NN~ 463 (539)
T TIGR02418 384 SHYIWMARYFRSYRARHLLISNGMQTLGVALPWAIGAALVRPNTKVVSVSGDGGFLFSSMELETAVRLKLNIVHIIWNDN 463 (539)
T ss_pred HHHHHHHHhcccCCCCceecCCCccccccHHHHHHHHHHhCCCCcEEEEEcchhhhchHHHHHHHHHhCCCeEEEEEECC
Confidence 987664 4455566667888999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhh----hcCC-CCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 495 GYTIEVE----IHDG-PYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 495 ~~g~~~~----~~~~-~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+|++.+. .++. ...+++++||.++|++||++ +.+|++++||
T Consensus 464 ~y~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~-----~~~V~~~~eL 509 (539)
T TIGR02418 464 GYNMVEFQEEMKYQRSSGVDFGPIDFVKYAESFGAK-----GLRVESPDQL 509 (539)
T ss_pred cchHHHHHHHHhcCCcccccCCCCCHHHHHHHCCCe-----EEEECCHHHH
Confidence 9998321 1222 12356789999999999996 6799998887
No 31
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=7.3e-90 Score=751.72 Aligned_cols=491 Identities=19% Similarity=0.214 Sum_probs=404.7
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHH
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (545)
|.+|++++|++.|+++||+||||+||+++++|++++.++++|++|.+|||++|+|||+||+|+|| ++||++|+|||.+|
T Consensus 1 ~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n 80 (574)
T PRK09124 1 MKQTVADYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLH 80 (574)
T ss_pred CCccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCcEEEeCcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHH
Confidence 56899999999999999999999999999999999976568999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCC
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKES 183 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~ 183 (545)
+++||++||.+++|||+|+|++++...+++ .+| ..||.++|+++|||+.++.+++++++.++||++.|.+++
T Consensus 81 ~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~Q---~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~ 152 (574)
T PRK09124 81 LINGLFDCHRNHVPVLAIAAHIPSSEIGSG-----YFQ---ETHPQELFRECSHYCELVSNPEQLPRVLAIAMRKAILNR 152 (574)
T ss_pred HHHHHHHHhhcCCCEEEEecCCccccCCCC-----Ccc---ccChhhhcccceeeeEEeCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998877765 233 357889999999999999999999999999999999888
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhC
Q 009060 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (545)
Q Consensus 184 GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~ 263 (545)
|||||+||.|++..+.+.. ......... .....+++..+++++++|++||||+|++|+|+. ++.++|.+|+|++|
T Consensus 153 gPV~l~iP~Dv~~~~~~~~-~~~~~~~~~--~~~~~~~~~~i~~~~~~L~~AkrPvii~G~g~~--~a~~~l~~lae~l~ 227 (574)
T PRK09124 153 GVAVVVLPGDVALKPAPER-ATPHWYHAP--QPVVTPAEEELRKLAALLNGSSNITLLCGSGCA--GAHDELVALAETLK 227 (574)
T ss_pred CCEEEEeChhhhhCccccc-cccccccCC--CCCCCCCHHHHHHHHHHHHcCCCCEEEECcChH--hHHHHHHHHHHHhC
Confidence 9999999999987432211 100000000 011112456789999999999999999999984 58899999999999
Q ss_pred CceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecCC
Q 009060 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (545)
Q Consensus 264 ~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 343 (545)
+||+||++|||.||++||+++|.+ |..+.+..++++++||+||+||++++... | +.+..++||||.|+.+++ +
T Consensus 228 ~PV~tt~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~~~~aDlvl~lG~~~~~~~---~--~~~~~~ii~id~d~~~~~-~ 300 (574)
T PRK09124 228 APIVHALRGKEHVEYDNPYDVGMT-GLIGFSSGYHAMMNCDTLLMLGTDFPYRQ---F--YPTDAKIIQIDINPGSLG-R 300 (574)
T ss_pred CceEEcccccccCCCCCcccccCC-ccCCCHHHHHHHHhCCEEEEECCCCCccc---c--cCCCCcEEEeeCCHHHhC-C
Confidence 999999999999999999999985 78888888899999999999999885431 1 234568999999999987 3
Q ss_pred Ccccc----ccHHHHHHHHHHHhccCc-hhh-hhhhh---hcCCC--CCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEe
Q 009060 344 PSLGW----VFMADFLSALAKKLRKNT-TAL-ENYRR---IYVPP--GIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIA 412 (545)
Q Consensus 344 ~~~~~----~d~~~~l~~L~~~l~~~~-~~~-~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~ 412 (545)
+...+ .|++.+|++|.+.+..+. ..| +.|.+ ..... ..........++++..+++.|++.+|++++++.
T Consensus 301 ~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ivv~ 380 (574)
T PRK09124 301 RSPVDLGLVGDVKATLAALLPLLEEKTDRKFLDKALEHYRKARKGLDDLAVPSDGGKPIHPQYLARQISEFAADDAIFTC 380 (574)
T ss_pred CCCCCeEEEccHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHhhhhhhcccCCCCcCCHHHHHHHHHhhcCCCcEEEE
Confidence 33333 489999999988775322 112 22211 10000 000011123569999999999999999999999
Q ss_pred cCCccccccc-cccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEE
Q 009060 413 ETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLI 491 (545)
Q Consensus 413 d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~ 491 (545)
|+|++..|.. ++..+++.+|+.+.++|+|||++|+|||+++++|+|+||+|+|||||+|++|||+|++||++|+++||+
T Consensus 381 d~g~~~~~~~~~~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 460 (574)
T PRK09124 381 DVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVALSGDGGFSMLMGDFLSLVQLKLPVKIVVF 460 (574)
T ss_pred cCCHHHHHHHHhcccCCCCeEEecCCcccccchHHHHHHHHHhCCCCeEEEEecCcHHhccHHHHHHHHHhCCCeEEEEE
Confidence 9999987653 456667778999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCchhhh-hhh--cCC--CCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 492 NNGGYTIE-VEI--HDG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 492 NN~~~g~~-~~~--~~~--~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
||++||+. ..+ ... .+++++++||+++|++||++ +++|++++||
T Consensus 461 NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~-----~~~v~~~~eL 509 (574)
T PRK09124 461 NNSVLGFVAMEMKAGGYLTDGTDLHNPDFAAIAEACGIT-----GIRVEKASEL 509 (574)
T ss_pred eCCccccHHHHHHhcCCccccCcCCCCCHHHHHHHCCCe-----EEEeCCHHHH
Confidence 99999982 211 111 23466789999999999996 6789998886
No 32
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=100.00 E-value=1.2e-89 Score=748.05 Aligned_cols=496 Identities=22% Similarity=0.275 Sum_probs=410.3
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHH
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (545)
||++++|++.|+++||+||||+||+.+++|+++|.++++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~~l~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l 80 (558)
T TIGR00118 1 MSGAEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLV 80 (558)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence 689999999999999999999999999999999976678999999999999999999999999 9999999999999999
Q ss_pred HHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-CC
Q 009060 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (545)
Q Consensus 106 ~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~G 184 (545)
+||++||.+++|||+|+|++++...+++ .+| ..||..+++++|||+.++++++++++.++||++.|.++ +|
T Consensus 81 ~~i~~A~~~~~Pvl~i~g~~~~~~~~~~-----~~q---~~d~~~~~~~~tk~~~~v~~~~~~~~~v~~A~~~A~~~~~G 152 (558)
T TIGR00118 81 TGIATAYMDSIPMVVFTGQVPTSLIGSD-----AFQ---EADILGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPG 152 (558)
T ss_pred HHHHHHHhcCCCEEEEecCCCccccCCC-----CCc---ccChhhhhcCccceeEEeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998866654 232 35789999999999999999999999999999999996 69
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCC
Q 009060 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (545)
Q Consensus 185 PV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~ 264 (545)
||||+||.|++..+ ...+.+.........+...+.+..+++++++|.+||||+|++|.|++++++.++|++|+|++++
T Consensus 153 PV~i~iP~dv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~ 230 (558)
T TIGR00118 153 PVLVDLPKDVTTAE--IEYPYPEKVNLPGYRPTVKGHPLQIKKAAELINLAKKPVILVGGGVIIAGASEELKELAERIQI 230 (558)
T ss_pred eEEEEcChhhhhhh--ccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccchHHHHHHHHHHhCC
Confidence 99999999997642 2111111100000011112245679999999999999999999999988999999999999999
Q ss_pred ceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecCCC
Q 009060 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (545)
Q Consensus 265 Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~ 344 (545)
||+||+++||.||++||+++|++ |..+.+.++++++++|+||+||+++++..+..|..+.++.++||||.|+.+++ +.
T Consensus 231 pv~tt~~~kg~~~e~hp~~~G~~-g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~ 308 (558)
T TIGR00118 231 PVTTTLMGLGSFPEDHPLSLGML-GMHGTKTANLAVHECDLIIAVGARFDDRVTGNLAKFAPNAKIIHIDIDPAEIG-KN 308 (558)
T ss_pred CEEEccccCCCCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCcEEEEeCCHHHhC-Cc
Confidence 99999999999999999999996 78888889999999999999999998887766655566778999999999886 33
Q ss_pred cccc----ccHHHHHHHHHHHhccC----chhhhhhh-hhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCC
Q 009060 345 SLGW----VFMADFLSALAKKLRKN----TTALENYR-RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415 (545)
Q Consensus 345 ~~~~----~d~~~~l~~L~~~l~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G 415 (545)
+..+ .|++.+|++|.+.+... ...|.+.. +.+..... .......++++.++++.|++.+|++++++.|+|
T Consensus 309 ~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g 387 (558)
T TIGR00118 309 VRVDIPIVGDARNVLEELLKKLFELKERKESAWLEQINKWKKEYPL-KMDYTEEGIKPQQVIEELSRVTKDEAIVTTDVG 387 (558)
T ss_pred CCCCeEEecCHHHHHHHHHHhhhhccccCcHHHHHHHHHHHHhChh-hccCCCCCcCHHHHHHHHHhhCCCCeEEEeCCc
Confidence 2222 48999999999977432 11232211 11100000 001123469999999999999999999999999
Q ss_pred cccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCC
Q 009060 416 DSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNG 494 (545)
Q Consensus 416 ~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~ 494 (545)
++..|. .++..+++.+|+.++++|+|||++|+|||++++.|+|+||+++|||||+|+++||+|++|+++|+++||+||+
T Consensus 388 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~~GDG~f~~~~~eL~ta~~~~l~~~~vv~NN~ 467 (558)
T TIGR00118 388 QHQMWAAQFYPFRKPRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICITGDGSFQMNLQELSTAVQYDIPVKILILNNR 467 (558)
T ss_pred HHHHHHHHhcccCCCCeEEeCCccccccchhhHHHhhhhhCCCCcEEEEEcchHHhccHHHHHHHHHhCCCeEEEEEeCC
Confidence 986554 4566666777999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhh----hhcCCCC--CCC-CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 495 GYTIEV----EIHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 495 ~~g~~~----~~~~~~~--~~l-~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+|++.. .++.+.+ ..+ +++||.++|++||++ +++|++.+|+
T Consensus 468 ~~~~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~~l 515 (558)
T TIGR00118 468 YLGMVRQWQELFYEERYSHTHMGSLPDFVKLAEAYGIK-----GIRIEKPEEL 515 (558)
T ss_pred chHHHHHHHHHhcCCceeeccCCCCCCHHHHHHHCCCe-----EEEECCHHHH
Confidence 999822 2223322 233 469999999999996 6788887775
No 33
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=100.00 E-value=1.1e-89 Score=747.74 Aligned_cols=492 Identities=21% Similarity=0.285 Sum_probs=406.2
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHH
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (545)
+.++++|+|++.|+++||+||||+||+++++|+++|.++++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|
T Consensus 6 ~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N 85 (557)
T PRK08199 6 RARTGGQILVDALRANGVERVFCVPGESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYGKLTGRPGICFVTRGPGATN 85 (557)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHhhccCCCcEEEeccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHH
Confidence 45899999999999999999999999999999999987667999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (545)
+++||++||.+++|||+|+|+.+....+++ .+| ..||..+|+++|||+.++++++++++.++|||+.|.++
T Consensus 86 ~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~-----~~q---~~d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~~ 157 (557)
T PRK08199 86 ASIGVHTAFQDSTPMILFVGQVARDFRERE-----AFQ---EIDYRRMFGPMAKWVAEIDDAARIPELVSRAFHVATSGR 157 (557)
T ss_pred HHHHHHHHhhcCCCEEEEecCCccccCCCC-----ccc---ccCHHHhhhhhhceeeecCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998877765 233 25789999999999999999999999999999999996
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHh
Q 009060 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (545)
Q Consensus 183 ~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~ 262 (545)
+|||||+||.|++..+ ...+.... ..+. ...++++.+++++++|.+||||+|++|.|+.++++.++|++|+|++
T Consensus 158 ~GPV~l~iP~dl~~~~--~~~~~~~~--~~~~--~~~~~~~~i~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~ 231 (557)
T PRK08199 158 PGPVVLALPEDVLSET--AEVPDAPP--YRRV--AAAPGAADLARLAELLARAERPLVILGGSGWTEAAVADLRAFAERW 231 (557)
T ss_pred CCcEEEEcCHhHhhCc--ccccccCC--cCCC--CCCCCHHHHHHHHHHHHhCCCCEEEECCCcCchhHHHHHHHHHHHh
Confidence 7999999999998642 21111111 1111 1123566799999999999999999999999888999999999999
Q ss_pred CCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCC---CCCcEEEEcCCcce
Q 009060 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLI---KKEKAIIVQPHRVT 339 (545)
Q Consensus 263 ~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~---~~~~~i~id~d~~~ 339 (545)
|+||++|+++||+||++||+++|.+ |..+.+.+++++++||+||++|+++++..+..|..+. +..++||||.|+.+
T Consensus 232 ~~pV~tt~~~kg~~~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~ 310 (557)
T PRK08199 232 GLPVACAFRRQDLFDNRHPNYAGDL-GLGINPALAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEE 310 (557)
T ss_pred CCCEEEcCCcCCCCCCCChhhccCC-cCcCCHHHHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHH
Confidence 9999999999999999999999985 7778888899999999999999999888765443322 45689999999998
Q ss_pred ecCCCcccc----ccHHHHHHHHHHHhccCchhhhhhh----hhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEE
Q 009060 340 VGNGPSLGW----VFMADFLSALAKKLRKNTTALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (545)
Q Consensus 340 ~~~~~~~~~----~d~~~~l~~L~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv 411 (545)
++ +.+..+ .|++.+|++|.+.+..+...|..+. +.+.... .......++++.++++.|++.+|++++++
T Consensus 311 ~~-~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~ii~ 387 (557)
T PRK08199 311 LG-RVYRPDLAIVADPAAFAAALAALEPPASPAWAEWTAAAHADYLAWS--APLPGPGAVQLGEVMAWLRERLPADAIIT 387 (557)
T ss_pred hC-CccCCCeEEecCHHHHHHHHHhcccccchhHHHHHHHHHHHHHhhc--cccCCCCCcCHHHHHHHHHHhCCCCeEEE
Confidence 87 332222 4899999999886543222232221 1111100 01112346999999999999999999999
Q ss_pred ecCCccccccc-cccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEE
Q 009060 412 AETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFL 490 (545)
Q Consensus 412 ~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV 490 (545)
.|+|++..|.. ++...++..++. .++|+|||++|+|||+++++|+++||+|+|||||+|+++||+|++++++|+++||
T Consensus 388 ~d~g~~~~~~~~~~~~~~~~~~~~-~~~g~mG~glpaaiGa~la~p~~~vv~i~GDGsf~~~~~el~ta~~~~l~i~~vv 466 (557)
T PRK08199 388 NGAGNYATWLHRFFRFRRYRTQLA-PTSGSMGYGLPAAIAAKLLFPERTVVAFAGDGCFLMNGQELATAVQYGLPIIVIV 466 (557)
T ss_pred ECChHHHHHHHHhcCcCCCCeEEC-CCCccccchHHHHHHHHHhCCCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEEE
Confidence 99999876643 444445555554 4679999999999999999999999999999999999999999999999999999
Q ss_pred EeCCchhhhh----hhcCCCC--CCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 491 INNGGYTIEV----EIHDGPY--NVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 491 ~NN~~~g~~~----~~~~~~~--~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+||++|++.+ ..+.+.+ +++.++||.++|++||++ +.+|++.+|+
T Consensus 467 ~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~el 517 (557)
T PRK08199 467 VNNGMYGTIRMHQEREYPGRVSGTDLTNPDFAALARAYGGH-----GETVERTEDF 517 (557)
T ss_pred EeCCcchHHHHHHHHhcCCccccccCCCCCHHHHHHHCCCe-----EEEeCCHHHH
Confidence 9999999822 2222322 456779999999999996 6788888876
No 34
>PRK06154 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-89 Score=743.63 Aligned_cols=490 Identities=20% Similarity=0.236 Sum_probs=398.9
Q ss_pred CCCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhc--C-ceEEEEcCCc
Q 009060 23 GASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSR--G-VGACVVTFTV 99 (545)
Q Consensus 23 ~~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~t--g-~gv~~~t~Gp 99 (545)
.+..||++|+|++.|+++||++|||+|| .+|+|+|.+ ++|++|.+|||++|+|||+||+|+| | ++||++|+||
T Consensus 16 ~~~~~~~a~~l~~~L~~~GV~~vFGip~---~~l~dal~~-~~i~~i~~rhE~~A~~mAdgyar~t~g~~~gv~~~t~GP 91 (565)
T PRK06154 16 EAKTMKVAEAVAEILKEEGVELLFGFPV---NELFDAAAA-AGIRPVIARTERVAVHMADGYARATSGERVGVFAVQYGP 91 (565)
T ss_pred CcCcccHHHHHHHHHHHcCCCEEEeCcC---HHHHHHHHh-cCCeEEeeCcHHHHHHHHHHHHHhcCCCCCEEEEECCCc
Confidence 4567899999999999999999999995 489999975 5899999999999999999999999 5 8999999999
Q ss_pred chHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHh
Q 009060 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTA 179 (545)
Q Consensus 100 G~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a 179 (545)
|++|++++|++||.+++|||+|+|+.+....+++ ++ .|+.++|+++|||+.++.+++++++.++|||+.|
T Consensus 92 G~~N~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~---------~~-~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A 161 (565)
T PRK06154 92 GAENAFGGVAQAYGDSVPVLFLPTGYPRGSTDVA---------PN-FESLRNYRHITKWCEQVTLPDEVPELMRRAFTRL 161 (565)
T ss_pred cHHHHHHHHHHHhhcCCCEEEEeCCCCcccccCC---------CC-cchhhhHhhcceeEEECCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887744332 11 3678999999999999999999999999999999
Q ss_pred hhC-CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHH
Q 009060 180 LKE-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIEL 258 (545)
Q Consensus 180 ~~~-~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~l 258 (545)
+++ +|||||+||.|++..+ .... +.+... +......+++..+++++++|.+||||+|++|.|++++++.+++++|
T Consensus 162 ~s~~~GPV~l~iP~Dv~~~~--~~~~-~~~~~~-~~~~~~~~~~~~i~~aa~~L~~A~rPvil~G~g~~~~~a~~~l~~l 237 (565)
T PRK06154 162 RNGRPGPVVLELPVDVLAEE--LDEL-PLDHRP-SRRSRPGADPVEVVEAAALLLAAERPVIYAGQGVLYAQATPELKEL 237 (565)
T ss_pred hcCCCceEEEecchHHhhhh--cccc-cccccC-CCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHH
Confidence 995 7999999999998742 2110 111000 0011112356789999999999999999999999999999999999
Q ss_pred HHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcc
Q 009060 259 ADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRV 338 (545)
Q Consensus 259 ae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~ 338 (545)
||++++||+||++|||.||++||+++|.. |..+.+.+++++++||+||+||+++++... .+. +.++.++||||.|+.
T Consensus 238 ae~l~~PV~tt~~gkg~~~~~hpl~~G~~-g~~~~~~~~~~~~~aDlvL~lG~~l~~~~~-~~~-~~~~~~vI~id~d~~ 314 (565)
T PRK06154 238 AELLEIPVMTTLNGKSAFPEDHPLALGSG-GRARPATVAHFLREADVLFGIGCSLTRSYY-GLP-MPEGKTIIHSTLDDA 314 (565)
T ss_pred HHHhCCCEEECCCcccCCCCCCccccCCC-CCCCcHHHHHHHHhCCEEEEECCCCccccc-Ccc-CCCCCeEEEEECCHH
Confidence 99999999999999999999999999984 666777889999999999999999987543 232 445678999999999
Q ss_pred eecCCCcccc----ccHHHHHHHHHHHhccCc-------hhhh----hhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhh
Q 009060 339 TVGNGPSLGW----VFMADFLSALAKKLRKNT-------TALE----NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDM 403 (545)
Q Consensus 339 ~~~~~~~~~~----~d~~~~l~~L~~~l~~~~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (545)
+++ +++..+ .|++.+|++|.+.+..+. ..|. .+++.+.............++++.++++.|++.
T Consensus 315 ~~~-~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~ 393 (565)
T PRK06154 315 DLN-KDYPIDHGLVGDAALVLKQMIEELRRRVGPDRGRAQQVAAEIEAVRAAWLAKWMPKLTSDSTPINPYRVVWELQHA 393 (565)
T ss_pred Hhc-cccCCCeeEEcCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhHHhhhhhccCCCCCcCHHHHHHHHHHh
Confidence 987 332222 389999999998775431 1121 111111001000111234579999999999999
Q ss_pred CC-CCCEEEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHH
Q 009060 404 LS-GDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIR 481 (545)
Q Consensus 404 l~-~~~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~ 481 (545)
++ +|.+++.|+|++..|. .++....+.+|+.+.++|+|||++|+|||+++++|+|+||+++|||||+|+.|||+|++|
T Consensus 394 l~~~d~iv~~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m~~~EL~Ta~r 473 (565)
T PRK06154 394 VDIKTVIITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMTGMDFETAVR 473 (565)
T ss_pred cCCCCEEEEECCcccHHHHHHhCCCCCCCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHHHHHHHH
Confidence 97 5888888999998765 455666677799888999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEEEEeCCchhhh-hhh--cCCCC--CCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 482 CGQRSIIFLINNGGYTIE-VEI--HDGPY--NVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 482 ~~lpi~ivV~NN~~~g~~-~~~--~~~~~--~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
||+|+++||+||++|++. ..+ +...+ .+ .++||+++|++||++ +++|++.+||
T Consensus 474 ~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~~~~-~~~df~~lA~a~G~~-----g~~V~~~~el 531 (565)
T PRK06154 474 ERIPILTILLNNFSMGGYDKVMPVSTTKYRATD-ISGDYAAIARALGGY-----GERVEDPEML 531 (565)
T ss_pred hCCCeEEEEEECCccceeehhhhhhcCcccccC-CCCCHHHHHHHCCCe-----EEEECCHHHH
Confidence 999999999999999972 111 11222 23 357999999999995 7899998876
No 35
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=1.6e-89 Score=749.59 Aligned_cols=497 Identities=22% Similarity=0.309 Sum_probs=410.2
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHH
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (545)
|+++|+|++.|+++||++|||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+|| ++||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l 79 (586)
T PRK06276 1 MKGAEAIIKALEAEGVKIIFGYPGGALLPFYDALYD-SDLIHILTRHEQAAAHAADGYARASGKVGVCVATSGPGATNLV 79 (586)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHh-CCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHH
Confidence 689999999999999999999999999999999975 48999999999999999999999999 9999999999999999
Q ss_pred HHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-CC
Q 009060 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (545)
Q Consensus 106 ~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~G 184 (545)
+||++||.+++|||+|+|+.++...+++ .+| ..||..+++++|||+.++++++++++.+++|++.|.++ +|
T Consensus 80 ~~i~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~q---~~d~~~l~~~~tk~s~~v~~~~~i~~~i~~A~~~A~~~~~G 151 (586)
T PRK06276 80 TGIATAYADSSPVIALTGQVPTKLIGND-----AFQ---EIDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPG 151 (586)
T ss_pred HHHHHHHhcCCCEEEEeCCCCccccCCC-----CCc---cccHhhHHhhhcceEEecCCHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999998866654 233 25799999999999999999999999999999999996 69
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCcc--cCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHh
Q 009060 185 PVYISISCNLPGIPHPTFARDPVPFF--LAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (545)
Q Consensus 185 PV~l~iP~dv~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~ 262 (545)
||||+||.|++..+.+.. ..+.+.. .....+...+++..+++++++|.+||||+|++|.|++++++.++|++|+|++
T Consensus 152 PV~l~iP~Dv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~ 230 (586)
T PRK06276 152 PVHIDLPKDVQEGELDLE-KYPIPAKIDLPGYKPTTFGHPLQIKKAAELIAEAERPVILAGGGVIISGASEELIELSELV 230 (586)
T ss_pred cEEEEcChhHHhhhhccc-cccccccccccCCCCCCCCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHH
Confidence 999999999976321110 0011100 0000011122466799999999999999999999999889999999999999
Q ss_pred CCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecC
Q 009060 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (545)
Q Consensus 263 ~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (545)
|+||+||+++||.||++||+++|.+ |..+++..++++++||+||++|+++++..+..+..+.++.++||||.|+.+++
T Consensus 231 ~~pv~tt~~~kg~~p~~hp~~~G~~-G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~- 308 (586)
T PRK06276 231 KIPVCTTLMGKGAFPEDHPLALGMV-GMHGTKAANYSVTESDVLIAIGCRFSDRTTGDISSFAPNAKIIHIDIDPAEIG- 308 (586)
T ss_pred CCCEEEcCCCCccCCCCCcccccCC-CCCCCHHHHHHHHcCCEEEEECCCCCccccCCccccCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999986 88888889999999999999999998887766655556778999999999886
Q ss_pred CCcccc----ccHHHHHHHHHHHhccCc----hhhhhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCC-----CCE
Q 009060 343 GPSLGW----VFMADFLSALAKKLRKNT----TALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSG-----DTA 409 (545)
Q Consensus 343 ~~~~~~----~d~~~~l~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~~i 409 (545)
++...+ .|++.+|++|++.+..+. ..|.+..+.......+.......++++..+++.|++.+|+ +++
T Consensus 309 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~~~~~i 388 (586)
T PRK06276 309 KNVRVDVPIVGDAKNVLRDLLAELMKKEIKNKSEWLERVKKLKKESIPRMDFDDKPIKPQRVIKELMEVLREIDPSKNTI 388 (586)
T ss_pred CcCCCceEEecCHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHhccccccCCCCCcCHHHHHHHHHHhccccCCCCCeE
Confidence 333222 489999999998775421 1222111110000001111123469999999999999998 999
Q ss_pred EEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEE
Q 009060 410 VIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSII 488 (545)
Q Consensus 410 vv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~i 488 (545)
++.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++++|+++||+++|||||+|++|||+|++||++|+++
T Consensus 389 v~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~~ 468 (586)
T PRK06276 389 ITTDVGQNQMWMAHFFKTSAPRSFISSGGLGTMGFGFPAAIGAKVAKPDANVIAITGDGGFLMNSQELATIAEYDIPVVI 468 (586)
T ss_pred EEeCCcHHHHHHHHhcccCCCCeEEcCCCccccccchhHHHhhhhhcCCCcEEEEEcchHhhccHHHHHHHHHhCCCeEE
Confidence 999999987664 4456667777998889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCchhhh----hhhcCCCC--CCC-CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 489 FLINNGGYTIE----VEIHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 489 vV~NN~~~g~~----~~~~~~~~--~~l-~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
||+||++|++. +..++..+ .++ +++||.++|++||++ +.+|++++|+
T Consensus 469 vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~-----~~~v~~~~el 522 (586)
T PRK06276 469 CIFDNRTLGMVYQWQNLYYGKRQSEVHLGETPDFVKLAESYGVK-----ADRVEKPDEI 522 (586)
T ss_pred EEEeCCchHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCe-----EEEECCHHHH
Confidence 99999999982 22223333 344 579999999999996 6789998887
No 36
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-89 Score=745.85 Aligned_cols=490 Identities=19% Similarity=0.240 Sum_probs=404.0
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHH
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (545)
|.||++++|++.|+++||+||||+||+++++|+++|.++.+|++|.+|||++|+|||+||+|+|| ++||++|+|||++|
T Consensus 1 ~~~t~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N 80 (578)
T PRK06546 1 MAKTVAEQLVEQLVAAGVKRIYGIVGDSLNPIVDAVRRTGGIEWVHVRHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLH 80 (578)
T ss_pred CCccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCeEEEeCcHHHHHHHHHhHHHhhCCceEEEECCCCcHHH
Confidence 45899999999999999999999999999999999987668999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCC
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKES 183 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~ 183 (545)
+++||++||.+++|||+|+|+.+....+++ .+| ..||.++|+++|||+.++++++++++.+++|++.|.++|
T Consensus 81 ~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~Q---e~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~ 152 (578)
T PRK06546 81 LINGLYDAHRSGAPVLAIASHIPSAQIGSG-----FFQ---ETHPDRLFVECSGYCEMVSSAEQAPRVLHSAIQHAVAGG 152 (578)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCccccCCC-----Ccc---ccChhhhcccceeeEeEeCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998877665 233 247789999999999999999999999999999999889
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhC
Q 009060 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (545)
Q Consensus 184 GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~ 263 (545)
|||||+||.|++....+.. ..+.. ..+......++++.+++++++|++||||+|++|+|++ ++.+++++|+|++|
T Consensus 153 GPV~l~lP~Dv~~~~~~~~-~~~~~--~~~~~~~~~~~~~~i~~a~~~L~~A~rPvii~G~g~~--~a~~~l~~lae~~g 227 (578)
T PRK06546 153 GVSVVTLPGDIADEPAPEG-FAPSV--ISPRRPTVVPDPAEVRALADAINEAKKVTLFAGAGVR--GAHAEVLALAEKIK 227 (578)
T ss_pred CCEEEEcChhhhhcccccc-ccccc--cccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcchH--HHHHHHHHHHHHhC
Confidence 9999999999987422211 10001 1111111123567899999999999999999999997 58899999999999
Q ss_pred CceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecCC
Q 009060 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (545)
Q Consensus 264 ~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 343 (545)
+||++|++|||.||++||+++|+. |..+++.+++++++||+||+||+++++. .+.++.++||||.|+.+++ +
T Consensus 228 ~Pv~~t~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~l~~aDlvl~lG~~~~~~------~~~~~~~~I~vd~d~~~~~-~ 299 (578)
T PRK06546 228 APVGHSLRGKEWIQYDNPFDVGMS-GLLGYGAAHEAMHEADLLILLGTDFPYD------QFLPDVRTAQVDIDPEHLG-R 299 (578)
T ss_pred cceEECcccccCCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEEcCCCChh------hcCCCCcEEEEeCCHHHhC-C
Confidence 999999999999999999999984 8888899999999999999999987531 2335568999999999997 3
Q ss_pred Cccc----cccHHHHHHHHHHHhccCc-hhh-h---hhhhhcCCC---CCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEE
Q 009060 344 PSLG----WVFMADFLSALAKKLRKNT-TAL-E---NYRRIYVPP---GIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (545)
Q Consensus 344 ~~~~----~~d~~~~l~~L~~~l~~~~-~~~-~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv 411 (545)
+... ..|++.+|++|.+.+..+. ..| . .|.+....+ ..........++++..+++.|++.++++++++
T Consensus 300 ~~~~~~~i~~D~~~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv 379 (578)
T PRK06546 300 RTRVDLAVHGDVAETIRALLPLVKEKTDRRFLDRMLKKHARKLEKVVGAYTRKVEKHTPIHPEYVASILDELAADDAVFT 379 (578)
T ss_pred CCCCCeEEEcCHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHhhhhhhhccccCCCCCcCHHHHHHHHHHhccCCcEEE
Confidence 3222 2489999999999886432 112 1 111111000 00001112346999999999999999999999
Q ss_pred ecCCcccccccc-ccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEE
Q 009060 412 AETGDSWFNCQK-LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFL 490 (545)
Q Consensus 412 ~d~G~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV 490 (545)
.|+|++..|... +...++++++.+.++|+|||++|+|||+++++|+|+||+|+|||||+|+++||+|+++|++|+++||
T Consensus 380 ~d~G~~~~~~~~~~~~~~~~~~~~s~~~gsmG~~~paAiGa~la~p~~~vv~i~GDGsf~~~~~el~Ta~~~~lpv~~vV 459 (578)
T PRK06546 380 VDTGMCNVWAARYITPNGRRRVIGSFRHGSMANALPHAIGAQLADPGRQVISMSGDGGLSMLLGELLTVKLYDLPVKVVV 459 (578)
T ss_pred ECCcHHHHHHHHhcCCCCCceEEccCCcccccchhHHHHHHHHhCCCCcEEEEEcCchHhhhHHHHHHHHHhCCCeEEEE
Confidence 999998876544 4445566788888999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCchhhh-hhh--cCC-C-CCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 491 INNGGYTIE-VEI--HDG-P-YNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 491 ~NN~~~g~~-~~~--~~~-~-~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+||++|++. ..+ ... . ..+++++||.++|++||++ +.+|++++|+
T Consensus 460 ~NN~~~g~i~~~q~~~~~~~~~~~~~~~df~~lA~a~G~~-----~~~v~~~~el 509 (578)
T PRK06546 460 FNNSTLGMVKLEMLVDGLPDFGTDHPPVDYAAIAAALGIH-----AVRVEDPKDV 509 (578)
T ss_pred EECCccccHHHHHHhcCCCcccccCCCCCHHHHHHHCCCe-----eEEeCCHHHH
Confidence 999999982 111 111 1 2356789999999999996 5788888876
No 37
>PRK05858 hypothetical protein; Provisional
Probab=100.00 E-value=3.2e-89 Score=741.25 Aligned_cols=489 Identities=20% Similarity=0.273 Sum_probs=400.9
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchH
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGL 102 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~ 102 (545)
.+.|+++|+|++.|+++||++|||+||+++.+|++++.+ .+|++|.+|||++|+|||+||+|+|| ++||++|+|||++
T Consensus 2 ~~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~-~~i~~i~~rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~ 80 (542)
T PRK05858 2 AQTGHAGRLAARRLKAHGVDTMFTLSGGHLFPLYDGARE-EGIRLIDVRHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVT 80 (542)
T ss_pred cccCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHh-cCCCEEeeccHHHHHHHHHHHHHhcCCCeEEEEcCCchHH
Confidence 467999999999999999999999999999999999965 47999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC
Q 009060 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (545)
Q Consensus 103 n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (545)
|+++||++||.+++|||+|+|+.+....+++. .| ..||..+++++|||+.++++++++++.++||++.|.++
T Consensus 81 n~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~-----~q---~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~ 152 (542)
T PRK05858 81 NGMSAMAAAQFNQSPLVVLGGRAPALRWGMGS-----LQ---EIDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTP 152 (542)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcccCCCCC-----Cc---ccchhhhhhhhhceEEEeCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999988776652 32 25789999999999999999999999999999999985
Q ss_pred -CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHH
Q 009060 183 -SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (545)
Q Consensus 183 -~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~ 261 (545)
+|||||+||.|++..+.+. ...+.+.... .....++++.+++++++|.+||||+|++|.|++++++.+++++|||+
T Consensus 153 ~~GPV~l~iP~dv~~~~~~~-~~~~~~~~~~--~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~ 229 (542)
T PRK05858 153 HRGPVFVDFPMDHAFSMADD-DGRPGALTEL--PAGPTPDPDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEE 229 (542)
T ss_pred CCCeEEEEcChhhhhccccc-cccccccccC--CCCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccChHHHHHHHHHH
Confidence 7999999999998743211 1111111000 01112356789999999999999999999999988999999999999
Q ss_pred hCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceec
Q 009060 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (545)
Q Consensus 262 ~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 341 (545)
+|+||+||++|||.||++||+++|. ..+++++++|+||++|+++++..+..+ +.++.++||||.|+.+++
T Consensus 230 lg~pV~tt~~~kg~~~~~hpl~~~~--------~~~~~l~~aD~vl~vG~~~~~~~~~~~--~~~~~~~i~id~d~~~~~ 299 (542)
T PRK05858 230 LGIPVLMNGMGRGVVPADHPLAFSR--------ARGKALGEADVVLVVGVPMDFRLGFGV--FGGTAQLVHVDDAPPQRA 299 (542)
T ss_pred hCCCEEEcCCcCCCCCCCCchhhhH--------HHHHHHHhCCEEEEECCCCcccccccc--cCCCCEEEEECCCHHHhc
Confidence 9999999999999999999999863 567889999999999999876554332 334578999999999887
Q ss_pred CCCccc----cccHHHHHHHHHHHhccCc--hhh-hhhhhhc---CCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEE
Q 009060 342 NGPSLG----WVFMADFLSALAKKLRKNT--TAL-ENYRRIY---VPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (545)
Q Consensus 342 ~~~~~~----~~d~~~~l~~L~~~l~~~~--~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv 411 (545)
+.+.. ..|+++++++|.+.+..+. ..| ..+++.+ .............++++.++++.|++.+|++.+++
T Consensus 300 -~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv 378 (542)
T PRK05858 300 -HHRPVAAGLYGDLSAILSALAGAGGDRTDHQGWIEELRTAETAARARDAAELADDRDPIHPMRVYGELAPLLDRDAIVI 378 (542)
T ss_pred -CCCCCceEEeCCHHHHHHHHHHhcccccCcHHHHHHHHHHHHhhhhhhhhhccCCCCCcCHHHHHHHHHHhcCCCeEEE
Confidence 32222 2489999999998775421 112 1111111 00000001122357999999999999999999999
Q ss_pred ecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEE
Q 009060 412 AETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFL 490 (545)
Q Consensus 412 ~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV 490 (545)
.|+|++..|. .++...++.+++.+.++|+|||++|+|||++++.|+|+||+++|||||+|+++||+|++||++|+++||
T Consensus 379 ~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la~p~r~vv~i~GDG~f~~~~~eL~Ta~~~~lpi~ivV 458 (542)
T PRK05858 379 GDGGDFVSYAGRYIDPYRPGCWLDPGPFGCLGTGPGYALAARLARPSRQVVLLQGDGAFGFSLMDVDTLVRHNLPVVSVI 458 (542)
T ss_pred ECCcHHHHHHHHHccccCCCCEEeCCCccccccchhHHHHHHHhCCCCcEEEEEcCchhcCcHHHHHHHHHcCCCEEEEE
Confidence 9999987554 445555566788888899999999999999999999999999999999999999999999999999999
Q ss_pred EeCCchhhhh----hhcCCC-CCCC-CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 491 INNGGYTIEV----EIHDGP-YNVI-KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 491 ~NN~~~g~~~----~~~~~~-~~~l-~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+||++|++.+ ..+... ..++ +++||.++|++||++ +.+|++++||
T Consensus 459 ~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~-----~~~v~~~~eL 509 (542)
T PRK05858 459 GNNGIWGLEKHPMEALYGYDVAADLRPGTRYDEVVRALGGH-----GELVTVPAEL 509 (542)
T ss_pred EeCCchhhHHHHHHHhcCCccccccCCCCCHHHHHHHCCCe-----EEEeCCHHHH
Confidence 9999999822 112221 2234 689999999999995 6799998887
No 38
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=100.00 E-value=4.1e-89 Score=746.64 Aligned_cols=494 Identities=20% Similarity=0.275 Sum_probs=409.3
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHH
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (545)
+.||++++|++.|+++||+||||+||+.+++|++++.+ ++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|
T Consensus 4 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~-~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 82 (588)
T PRK07525 4 MKMTPSEAFVETLQAHGITHAFGIIGSAFMDASDLFPP-AGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITN 82 (588)
T ss_pred ccccHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhc-cCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHH
Confidence 45899999999999999999999999999999999964 58999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCC
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKES 183 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~ 183 (545)
+++||++||.+++|||+|+|+.+....+++ .+| ..||..+++++|||+.++++++++++.++||++.|++++
T Consensus 83 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~-----~~q---~~d~~~l~~~~tk~~~~i~~~~~~~~~i~rA~~~A~~~~ 154 (588)
T PRK07525 83 FVTAVATAYWAHTPVVLVTPQAGTKTIGQG-----GFQ---EAEQMPMFEDMTKYQEEVRDPSRMAEVLNRVFDKAKRES 154 (588)
T ss_pred HHHHHHHHhhcCCCEEEEeCCCCcccCCCC-----CCc---ccchhhhhhhheeEEEECCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998766554 232 247899999999999999999999999999999999989
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhC
Q 009060 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (545)
Q Consensus 184 GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~ 263 (545)
|||||+||.|++..+.+. ..+.+... .. ..+++..+++++++|.+||||+|++|.|++++++.++|++|+|++|
T Consensus 155 GPV~i~iP~Dv~~~~~~~--~~~~~~~~-~~---~~~~~~~i~~a~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~ 228 (588)
T PRK07525 155 GPAQINIPRDYFYGVIDV--EIPQPVRL-ER---GAGGEQSLAEAAELLSEAKFPVILSGAGVVLSDAIEECKALAERLD 228 (588)
T ss_pred CCEEEEcChhHhhhhccc--ccCccccC-CC---CCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhC
Confidence 999999999998743221 11111111 11 1235678999999999999999999999999999999999999999
Q ss_pred CceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccc---cccCCCCCcEEEEcCCccee
Q 009060 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVG---YSLLIKKEKAIIVQPHRVTV 340 (545)
Q Consensus 264 ~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~---~~~~~~~~~~i~id~d~~~~ 340 (545)
+||+||+++||.||++||+++|.+ |..++...++++++||+||+||+++++..+.. +..+.++.++||||.|+.++
T Consensus 229 ~pv~tT~~gkg~~p~~hpl~~G~~-g~~g~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~ 307 (588)
T PRK07525 229 APVACGYLHNDAFPGSHPLWVGPL-GYNGSKAAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRI 307 (588)
T ss_pred CCeEEcccccccCCCCCccccccC-cccCcHHHHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHh
Confidence 999999999999999999999986 77788888999999999999999998765532 22344667999999999988
Q ss_pred cCCCcccc----ccHHHHHHHHHHHhccCc--------------hhhhhhhh----hcCCCC------CCC-cCCCCCCc
Q 009060 341 GNGPSLGW----VFMADFLSALAKKLRKNT--------------TALENYRR----IYVPPG------IPV-KRAQNEPL 391 (545)
Q Consensus 341 ~~~~~~~~----~d~~~~l~~L~~~l~~~~--------------~~~~~~~~----~~~~~~------~~~-~~~~~~~~ 391 (545)
+ +++..+ .|++.+|++|.+.+.... ..+..|.+ .+.... ... ......++
T Consensus 308 ~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 386 (588)
T PRK07525 308 G-LTKKVSVGICGDAKAVARELLARLAERLAGDAGREERKALIAAEKSAWEQELSSWDHEDDDPGTDWNEEARARKPDYM 386 (588)
T ss_pred C-CCCCCCceEecCHHHHHHHHHHhhhhhccccccchhhhhhhhhhHHHHHHHHHHHHhccccccccccccccccCCCCc
Confidence 6 333323 389999999988875320 01112211 110000 000 00123479
Q ss_pred CHHHHHHHHHhhCCCCCEEEecCCccccccc-cccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhc
Q 009060 392 RVNVLFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ 470 (545)
Q Consensus 392 ~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~ 470 (545)
++.++++.|++.+|+|++++.|+|++..|.. ++..+++.+++.+.++|+|||++|+|||+|++.|+|+||+++|||||+
T Consensus 387 ~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glp~aiGa~la~p~r~vv~i~GDG~f~ 466 (588)
T PRK07525 387 HPRQALREIQKALPEDAIVSTDIGNNCSIANSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGFAGDGAWG 466 (588)
T ss_pred CHHHHHHHHHHhCCCCcEEEECCcccHHHHHHhcccCCCCeEEccccccccccHHHHHHHHHHhCCCCcEEEEEcCchHh
Confidence 9999999999999999999999999877654 556677778999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhCCCeEEEEEeCCchhhhh----hhcCCCC--CCC-CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 471 VTAQEISTMIRCGQRSIIFLINNGGYTIEV----EIHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 471 ~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~----~~~~~~~--~~l-~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
|++|||+|++||++|+++||+||++|++.+ ..++..+ .++ +++||.++|++||++ +++|++.+|+
T Consensus 467 ~~~~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~-----~~~v~~~~el 538 (588)
T PRK07525 467 ISMNEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNRFVGTELDNNVSYAGIAEAMGAE-----GVVVDTQEEL 538 (588)
T ss_pred ccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCe-----EEEECCHHHH
Confidence 999999999999999999999999999822 1223333 244 468999999999995 6788888876
No 39
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-89 Score=743.36 Aligned_cols=480 Identities=20% Similarity=0.279 Sum_probs=394.5
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHH
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (545)
+|++++|++.|+++||+||||+||+++++|+|++.++ +|++|.+|||++|+|||+||+|+|| ++||++|+|||++|++
T Consensus 2 ~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~-~i~~v~~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l 80 (549)
T PRK06457 2 PSVAEVIIRVLEDNGIQRIYGIPGDSIDPLVDAIRKS-KVKYVQVRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLL 80 (549)
T ss_pred CcHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhc-CCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhH
Confidence 5899999999999999999999999999999999764 6999999999999999999999999 9999999999999999
Q ss_pred HHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCc
Q 009060 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKP 185 (545)
Q Consensus 106 ~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GP 185 (545)
+||++||.+++|||+|+|+++....+++ .+| ..||.++|+++|||+.++++++++++.+++||+.|++++||
T Consensus 81 ~~l~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~q---~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~GP 152 (549)
T PRK06457 81 NGLYDAKMDHAPVIALTGQVESDMIGHD-----YFQ---EVNLTKLFDDVAVFNQILINPENAEYIIRRAIREAISKRGV 152 (549)
T ss_pred HHHHHHHhcCCCEEEEecCCCccccCCC-----ccc---ccchhhhhccceeEEEEeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998766554 343 35789999999999999999999999999999999998899
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCc
Q 009060 186 VYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (545)
Q Consensus 186 V~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~P 265 (545)
|||+||.|++....+. . .... . +... +.....+++++++|++||||+|++|.|++ ++.+++++|||++++|
T Consensus 153 V~l~iP~Dv~~~~~~~--~-~~~~-~-~~~~--~~~~~~i~~~~~~L~~AkrPvii~G~g~~--~a~~~l~~lAe~~~~P 223 (549)
T PRK06457 153 AHINLPVDILRKSSEY--K-GSKN-T-EVGK--VKYSIDFSRAKELIKESEKPVLLIGGGTR--GLGKEINRFAEKIGAP 223 (549)
T ss_pred EEEEeCHhHhhccccc--c-cccc-c-CCCC--CCCHHHHHHHHHHHHcCCCcEEEECcchh--hHHHHHHHHHHHHCCC
Confidence 9999999997642111 1 1110 0 0111 11124688999999999999999999997 5779999999999999
Q ss_pred eEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecCCCc
Q 009060 266 IAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPS 345 (545)
Q Consensus 266 v~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~ 345 (545)
|+||++|||.||++||+++|.+ |..+++.+++++++||+||++|+++++.. | +.++.++||||.|+.+++ +.+
T Consensus 224 V~tt~~gkg~~~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~lG~~~~~~~---~--~~~~~~ii~id~d~~~~~-~~~ 296 (549)
T PRK06457 224 IIYTLNGKGILPDLDPKVMGGI-GLLGTKPSIEAMDKADLLIMLGTSFPYVN---F--LNKSAKVIQVDIDNSNIG-KRL 296 (549)
T ss_pred EEEcccccccCCCCChhhccCC-CCCCCHHHHHHHHhCCEEEEECCCCChhh---c--CCCCCcEEEEeCCHHHhC-CCC
Confidence 9999999999999999999996 77788889999999999999999985432 1 223568999999999987 333
Q ss_pred ccc----ccHHHHHHHHHHHhccCc-h----hhhhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCc
Q 009060 346 LGW----VFMADFLSALAKKLRKNT-T----ALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGD 416 (545)
Q Consensus 346 ~~~----~d~~~~l~~L~~~l~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~ 416 (545)
..+ .|++.+|+.+........ . ....|.+.... .......++++.+++++|++.+|++++++.|+|+
T Consensus 297 ~~~~~i~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~g~ 372 (549)
T PRK06457 297 DVDLSYPIPVAEFLNIDIEEKSDKFYEELKGKKEDWLDSISK----QENSLDKPMKPQRVAYIVSQKCKKDAVIVTDTGN 372 (549)
T ss_pred CCCeEEecCHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH----hhcCCCCCcCHHHHHHHHHhhCCCCeEEEECCcH
Confidence 333 489999964432211100 0 01223211100 0011234799999999999999999999999999
Q ss_pred cccccc-cccccCCCeeEeccCccccchhHHHHHHhhhhcC-CCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCC
Q 009060 417 SWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAK-DKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNG 494 (545)
Q Consensus 417 ~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p-~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~ 494 (545)
+..|.. ++..+++.+++.+.++|+|||++|+|||+++++| +|+||+++|||||+|++|||+|+++|++|+++||+||+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i~GDGsf~~~~~eL~Ta~~~~lpi~ivV~NN~ 452 (549)
T PRK06457 373 VTMWTARHFRASGEQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISFVGDGGFTMTMMELITAKKYDLPVKIIIYNNS 452 (549)
T ss_pred HHHHHHHhCCCCCCCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEEEcccHHhhhHHHHHHHHHHCCCeEEEEEECC
Confidence 876643 4555666779999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred chhhhhh---hcCC--CCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 495 GYTIEVE---IHDG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 495 ~~g~~~~---~~~~--~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+|++.+. .+.. ...+++++||+++|++||++ +.+|++++||
T Consensus 453 ~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~-----~~~v~~~~el 498 (549)
T PRK06457 453 KLGMIKFEQEVMGYPEWGVDLYNPDFTKIAESIGFK-----GFRLEEPKEA 498 (549)
T ss_pred ccchHHHHHHHhcCCcccccCCCCCHHHHHHHCCCe-----EEEeCCHHHH
Confidence 9998221 1111 23466789999999999996 5789988876
No 40
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=100.00 E-value=6.1e-89 Score=742.79 Aligned_cols=492 Identities=17% Similarity=0.230 Sum_probs=400.5
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCC-CCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHHH
Q 009060 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP-ELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLN 106 (545)
Q Consensus 29 ~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~-~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~ 106 (545)
++++|++.|+++||+||||+||+++++|+++|.+++ +|++|.+|||++|+|||+||+|+|| +|||++|+|||++|+++
T Consensus 1 ~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~~i~~v~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~ 80 (575)
T TIGR02720 1 ASAAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLN 80 (575)
T ss_pred CHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCcEEEeccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHH
Confidence 479999999999999999999999999999997643 5999999999999999999999999 99999999999999999
Q ss_pred HHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcE
Q 009060 107 AIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPV 186 (545)
Q Consensus 107 ~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV 186 (545)
+|++||.+++|||+|+|+.++...+++ .+| .+||..+++++|||+.++.+++++++.+++|++.|.+++|||
T Consensus 81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~q---~id~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV 152 (575)
T TIGR02720 81 GLYDAKEDHVPVLALVGQVPTTGMNMD-----TFQ---EMNENPIYADVAVYNRTAMTAESLPHVIDEAIRRAYAHNGVA 152 (575)
T ss_pred HHHHHhhcCCCEEEEecCCccccCCCC-----Ccc---eechhhhhhhcceEEEEeCCHHHHHHHHHHHHHHHhhCCCCE
Confidence 999999999999999999998765554 233 257899999999999999999999999999999999988999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCce
Q 009060 187 YISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (545)
Q Consensus 187 ~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv 266 (545)
||+||.|++..+.+.......+....+. ....++++.+++++++|++||||+|++|.|++ ++.++|.+|+|++++||
T Consensus 153 ~l~iP~Dv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~l~~PV 229 (575)
T TIGR02720 153 VVTIPVDFGWQEIPDNDYYASSVSYQTP-LLPAPDVEAVTRAVQTLKAAERPVIYYGIGAR--KAGEELEALSEKLKIPL 229 (575)
T ss_pred EEEECcchhhccccccccccccccccCC-CCCCCCHHHHHHHHHHHHcCCCcEEEECcchh--hHHHHHHHHHHHhCCCE
Confidence 9999999976432211100001100001 11123567899999999999999999999997 57899999999999999
Q ss_pred EeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecCCCcc
Q 009060 267 AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSL 346 (545)
Q Consensus 267 ~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~ 346 (545)
+||++|||.||++||+++|++ |..+++.++++++++|+||++|++++.... .+ .+.+..++||||.|+.+++ +++.
T Consensus 230 ~tt~~gkg~~~~~hpl~~G~~-g~~~~~~~~~~l~~aDlvl~vG~~~~~~~~-~~-~~~~~~~~I~id~d~~~~~-~~~~ 305 (575)
T TIGR02720 230 ISTGLAKGIIEDRYPAYLGSA-YRVAQKPANEALFQADLVLFVGNNYPFAEV-SK-AFKNTKYFIQIDIDPAKLG-KRHH 305 (575)
T ss_pred EEcccccccCCCCCcccccCC-cCCCcHHHHHHHHhCCEEEEeCCCCCcccc-cc-ccCCCceEEEEeCCHHHhC-CCCC
Confidence 999999999999999999986 777888889999999999999999864432 12 1223344699999999987 3332
Q ss_pred cc----ccHHHHHHHHHHHhccCch-hhh-hhh---hhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcc
Q 009060 347 GW----VFMADFLSALAKKLRKNTT-ALE-NYR---RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS 417 (545)
Q Consensus 347 ~~----~d~~~~l~~L~~~l~~~~~-~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~ 417 (545)
.+ .|++.+|++|++.+..+.. .|. .+. +...............++++..+++.|++.+|+|++++.|+|++
T Consensus 306 ~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~ii~~D~g~~ 385 (575)
T TIGR02720 306 TDIAVLADAKKALAAILAQVEPRESTPWWQANVANVKNWRAYLASLEDKTEGPLQAYQVYRAINKIAEDDAIYSIDVGDI 385 (575)
T ss_pred CCeEEecCHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhhccCCCCcCHHHHHHHHHHhCCCCcEEEeCCcHH
Confidence 22 4899999999988754221 121 111 00000000011122457999999999999999999999999998
Q ss_pred ccccc-cccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCch
Q 009060 418 WFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGY 496 (545)
Q Consensus 418 ~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~~ 496 (545)
..|.. ++..+.+.+++.+.++|+|||++|+|||+++++|+|+||+++|||||+|++|||+|++||++|+++||+||++|
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDGsf~m~~~eL~Tavr~~lpi~~VV~NN~~y 465 (575)
T TIGR02720 386 NINSNRHLKMTPKNKWITSNLFATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFSMTMQDLLTQVQYHLPVINIVFSNCTY 465 (575)
T ss_pred HHHHHHhCCcCCCCeEEcCCCcchhhchHHHHHHHHHhCCCCcEEEEEcccHHHhhHHHHHHHHHhCCCeEEEEEeCCcc
Confidence 87754 45666777799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh-hhhh--cCCCC--CCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 497 TI-EVEI--HDGPY--NVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 497 g~-~~~~--~~~~~--~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
++ +..+ .+.++ .+++++||+++|++||++ +.+|++.+|+
T Consensus 466 g~i~~~~~~~~~~~~~~~~~~~df~~iA~a~G~~-----~~~v~~~~el 509 (575)
T TIGR02720 466 GFIKDEQEDTNQPLIGVDFNDADFAKIAEGVGAV-----GFRVNKIEQL 509 (575)
T ss_pred HHHHHHHHHhCCCcccccCCCCCHHHHHHHCCCE-----EEEeCCHHHH
Confidence 98 2221 12333 356789999999999996 6788888776
No 41
>PRK07524 hypothetical protein; Provisional
Probab=100.00 E-value=3.6e-88 Score=732.99 Aligned_cols=488 Identities=21% Similarity=0.278 Sum_probs=397.6
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHH
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (545)
.|++|+|++.|+++||++|||+||+.++++++++.+ .+|++|.+|||++|+|||+||+|+|| +|||++|+|||++|++
T Consensus 2 ~~~a~~l~~~L~~~Gv~~vFg~pG~~~~~~~dal~~-~~i~~i~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~ 80 (535)
T PRK07524 2 TTCGEALVRLLEAYGVETVFGIPGVHTVELYRGLAG-SGIRHVTPRHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIA 80 (535)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhh-cCCcEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHH
Confidence 489999999999999999999999999999999975 48999999999999999999999999 9999999999999999
Q ss_pred HHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-CC
Q 009060 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (545)
Q Consensus 106 ~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~G 184 (545)
+||++||.+++|||+|+|+.++...+++.. .+ ++..||..+|+++|||+.++.+++++++.++||++.|+++ +|
T Consensus 81 ~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~---~~--~~~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~G 155 (535)
T PRK07524 81 TAMGQAYADSIPMLVISSVNRRASLGKGRG---KL--HELPDQRAMVAGVAAFSHTLMSAEDLPEVLARAFAVFDSARPR 155 (535)
T ss_pred HHHHHHHhcCCCEEEEeCCCChhhcCCCCc---cc--cccccHHHHhhhhceeEEEeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999887665421 11 2345789999999999999999999999999999999986 79
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCC
Q 009060 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (545)
Q Consensus 185 PV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~ 264 (545)
||||+||.|++..+.+ .....+. .. . ....++++.+++++++|.+||||+|++|.|++ ++.++|.+|||++++
T Consensus 156 PV~l~iP~Dv~~~~~~--~~~~~~~-~~-~-~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~l~~ 228 (535)
T PRK07524 156 PVHIEIPLDVLAAPAD--HLLPAPP-TR-P-ARPGPAPAALAQAAERLAAARRPLILAGGGAL--AAAAALRALAERLDA 228 (535)
T ss_pred cEEEEeCHhHHhcccc--cccCccc-cc-C-CCCCCCHHHHHHHHHHHHhCCCcEEEECCChH--HHHHHHHHHHHHHCC
Confidence 9999999999874322 1111110 10 0 11123567899999999999999999999997 588999999999999
Q ss_pred ceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccc-c-ccCCCCCcEEEEcCCcceecC
Q 009060 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVG-Y-SLLIKKEKAIIVQPHRVTVGN 342 (545)
Q Consensus 265 Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~-~-~~~~~~~~~i~id~d~~~~~~ 342 (545)
||+||+++||.||++||+++|.. | +...++++++++|+||++|++++...+.. | ..+.++.++||||.|+.+++
T Consensus 229 pV~tt~~~kg~~p~~hp~~~G~~-~--~~~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~- 304 (535)
T PRK07524 229 PVALTINAKGLLPAGHPLLLGAS-Q--SLPAVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQLA- 304 (535)
T ss_pred CEEEcccccccCCCCChhhccCC-C--CCHHHHHHHHhCCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHhC-
Confidence 99999999999999999999974 3 56788999999999999999987654421 1 12445678999999999886
Q ss_pred CCcccc----ccHHHHHHHHHHHhccCch--hhh-h-hhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecC
Q 009060 343 GPSLGW----VFMADFLSALAKKLRKNTT--ALE-N-YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAET 414 (545)
Q Consensus 343 ~~~~~~----~d~~~~l~~L~~~l~~~~~--~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~ 414 (545)
+.+..+ .|++.+|++|++.++.+.. .|. . +.+.+... .. ......+++.++++.|++.+| +.+++.|.
T Consensus 305 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~~~l~-~~~i~~d~ 380 (535)
T PRK07524 305 RNYPPALALVGDARAALEALLARLPGQAAAADWGAARVAALRQAL-RA--EWDPLTAAQVALLDTILAALP-DAIFVGDS 380 (535)
T ss_pred CCcCCCceEecCHHHHHHHHHHhccccCCchhhHHHHHHHHHHhc-hh--hccccccCHHHHHHHHHHhCC-CCEEEeCC
Confidence 332222 4899999999998865321 221 1 11111000 00 011234677889999999998 68888999
Q ss_pred Ccccccc-ccccccCCCeeEe-ccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEe
Q 009060 415 GDSWFNC-QKLRLPENCGYEF-QMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLIN 492 (545)
Q Consensus 415 G~~~~~~-~~~~~~~~~~~~~-~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~N 492 (545)
|++.+|. .++..+++.+|+. +.++|+|||++|+|||+++|+|+|+||+++|||||+|+++||+|++||++|+++||+|
T Consensus 381 g~~~~~~~~~~~~~~p~~~~~~~~~~g~mG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~ta~~~~lpi~~vV~N 460 (535)
T PRK07524 381 TQPVYAGNLYFDADAPRRWFNASTGYGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTLPELASAVEADLPLIVLLWN 460 (535)
T ss_pred cHHHHHHHHhcccCCCCceEeCCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHHhCCCeEEEEEE
Confidence 9887664 4566777777887 8899999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhh-hhhhc--CC--CCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 493 NGGYTI-EVEIH--DG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 493 N~~~g~-~~~~~--~~--~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
|++|++ +..++ +. ...+++++||.++|++||++ +.+|++.+|+
T Consensus 461 N~~~g~i~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~-----~~~v~~~~el 508 (535)
T PRK07524 461 NDGYGEIRRYMVARDIEPVGVDPYTPDFIALARAFGCA-----AERVADLEQL 508 (535)
T ss_pred CCchHHHHHHHHHhcCCccccCCCCCCHHHHHHHCCCc-----EEEeCCHHHH
Confidence 999997 22221 22 22456789999999999996 5788887776
No 42
>PRK07064 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-88 Score=737.87 Aligned_cols=486 Identities=22% Similarity=0.283 Sum_probs=395.5
Q ss_pred CccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHH
Q 009060 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (545)
.+|++++|++.|+++||+||||+||+++++|++++.++++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~ 81 (544)
T PRK07064 2 KVTVGELIAAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHARVSGGLGVALTSTGTGAGNA 81 (544)
T ss_pred CccHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhccCCccEEeeccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHH
Confidence 4789999999999999999999999999999999976668999999999999999999999999 999999999999999
Q ss_pred HHHHHHhHhcCCcEEEEeCCCCCcccCCCc-ccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-
Q 009060 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNR-ILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (545)
Q Consensus 105 ~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (545)
++||++||.+++|||+|+|+.++...+++. .+| +..||.++++++|||+.++++++++++.|+||++.|.++
T Consensus 82 ~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~------~~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~ 155 (544)
T PRK07064 82 AGALVEALTAGTPLLHITGQIETPYLDQDLGYIH------EAPDQLTMLRAVSKAAFRVRSAETALATIREAVRVALTAP 155 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccc------cccCHHHHhhhhcceEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999998887665542 122 345789999999999999999999999999999999996
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHh
Q 009060 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (545)
Q Consensus 183 ~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~ 262 (545)
+|||||+||.|++..+.+.. ....+. . . ....++++.+++++++|.+||||+|++|.|++ ++.++|.+|+| +
T Consensus 156 ~GPV~l~iP~dv~~~~~~~~-~~~~~~--~-~-~~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~--~a~~~l~~lae-~ 227 (544)
T PRK07064 156 TGPVSVEIPIDIQAAEIELP-DDLAPV--H-V-AVPEPDAAAVAELAERLAAARRPLLWLGGGAR--HAGAEVKRLVD-L 227 (544)
T ss_pred CCcEEEEeCHhHhhcccccc-cccccc--c-C-CCCCCCHHHHHHHHHHHHhCCCCEEEECCChH--hHHHHHHHHHH-c
Confidence 89999999999977432211 100111 1 1 11123567899999999999999999999987 57789999999 9
Q ss_pred CCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecC
Q 009060 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (545)
Q Consensus 263 ~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (545)
++||++|+++||.||++||+++|++ | +++.+++++++||+||+||+++++..+..|... ...++||||.|+.+++
T Consensus 228 ~~pv~~t~~~kg~~~~~hp~~~G~~-~--~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~- 302 (544)
T PRK07064 228 GFGVVTSTQGRGVVPEDHPASLGAF-N--NSAAVEALYKTCDLLLVVGSRLRGNETLKYSLA-LPRPLIRVDADAAADG- 302 (544)
T ss_pred CCCEEEccCccccCCCCChhhcccC-C--CCHHHHHHHHhCCEEEEecCCCCcccccccccC-CCCceEEEeCCHHHhC-
Confidence 9999999999999999999999986 4 677888999999999999999988877666433 3358999999999886
Q ss_pred CCcc----ccccHHHHHHHHHHHhccCc---hhhh-hhhhhcCCCCCCCcCCCCCCcCH-HHHHHHHHhhCCCCCEEEec
Q 009060 343 GPSL----GWVFMADFLSALAKKLRKNT---TALE-NYRRIYVPPGIPVKRAQNEPLRV-NVLFKHIQDMLSGDTAVIAE 413 (545)
Q Consensus 343 ~~~~----~~~d~~~~l~~L~~~l~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~ivv~d 413 (545)
.... ...|++.+|++|.+.++.+. ..|. .+.+.+.... . ....++.+ ..+++.|++.+|++++++.|
T Consensus 303 ~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~l~~~l~~~~ii~~d 378 (544)
T PRK07064 303 RGYPNDLFVHGDAARVLARLADRLEGRLSVDPAFAADLRAAREAAV-A---DLRKGLGPYAKLVDALRAALPRDGNWVRD 378 (544)
T ss_pred CcCCCCceEecCHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhh-h---hcccccCcHHHHHHHHHHhCCCCCEEEeC
Confidence 2222 23489999999998875421 1221 2211111100 0 01123544 46999999999999999999
Q ss_pred CCcc-ccc-cccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEE
Q 009060 414 TGDS-WFN-CQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLI 491 (545)
Q Consensus 414 ~G~~-~~~-~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~ 491 (545)
+|.+ ..| ..++....+..++.+.+ |+|||++|+|||+++|+|+|+||+++|||||+|++|||||++||++|+++||+
T Consensus 379 ~~~~~~~~~~~~~~~~~p~~~~~~~~-g~mG~~lpaAiGa~lA~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 457 (544)
T PRK07064 379 VTISNSTWGNRLLPIFEPRANVHALG-GGIGQGLAMAIGAALAGPGRKTVGLVGDGGLMLNLGELATAVQENANMVIVLM 457 (544)
T ss_pred CccchHHHHHHhcCccCCCceeccCC-CccccccchhhhhhhhCcCCcEEEEEcchHhhhhHHHHHHHHHhCCCeEEEEE
Confidence 9853 443 44555555555666555 99999999999999999999999999999999999999999999999999999
Q ss_pred eCCchhhhhh----hcCC--CCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 492 NNGGYTIEVE----IHDG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 492 NN~~~g~~~~----~~~~--~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
||++|++.+. .++. .+.+++++||+++|++||++ +.+|++.+||
T Consensus 458 NN~~yg~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~-----~~~v~~~~eL 507 (544)
T PRK07064 458 NDGGYGVIRNIQDAQYGGRRYYVELHTPDFALLAASLGLP-----HWRVTSADDF 507 (544)
T ss_pred eCChhHHHHHHHHHhcCCccccccCCCCCHHHHHHHCCCe-----EEEeCCHHHH
Confidence 9999998321 1222 34567789999999999996 6789998887
No 43
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=100.00 E-value=1.2e-87 Score=731.30 Aligned_cols=493 Identities=20% Similarity=0.223 Sum_probs=394.1
Q ss_pred CccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHH
Q 009060 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (545)
.++++|+|++.|+++||+||||+||+.++++++++.+ ++|++|.+|||++|+|||+||+|+|| +|||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~-~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~ 80 (554)
T TIGR03254 2 LTDGFHLVIDALKLNGINTIYGVVGIPVTDLARLAQA-KGMRYIGFRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNG 80 (554)
T ss_pred CCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHHhh-cCCcEEEeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhH
Confidence 4679999999999999999999999999999998864 58999999999999999999999999 999999999999999
Q ss_pred HHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-C
Q 009060 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (545)
Q Consensus 105 ~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (545)
++||++||.+++|||+|+|+.+....+.+. ..+ |..||..+|+++|||+.++++++++++.++|||+.|.++ |
T Consensus 81 ~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~---~~~---q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~p 154 (554)
T TIGR03254 81 LTALANATTNCFPMIMISGSSERHIVDLQQ---GDY---EEMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRP 154 (554)
T ss_pred HHHHHHHHhcCCCEEEEEccCCccccccCC---CCc---chhhHHHHhhhhheeEEEcCCHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999998876332110 112 235899999999999999999999999999999999985 7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhC
Q 009060 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (545)
Q Consensus 184 GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~ 263 (545)
|||||+||.|++..+.+............+......+++..+++++++|.+||||+|++|.|++++++.++|++|+|+++
T Consensus 155 GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~ 234 (554)
T TIGR03254 155 GGVYLDLPAAVLGQTMEAEKAKKTLVKVVDPAPKQLPSPDSVDRAVELLKDAKRPLILLGKGAAYAQADEEIREFVEKTG 234 (554)
T ss_pred CcEEEEcCHHHhhccccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHHC
Confidence 99999999999874322110000000000000111235678999999999999999999999999999999999999999
Q ss_pred CceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccc-cCCCCCcEEEEcCCcceecC
Q 009060 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYS-LLIKKEKAIIVQPHRVTVGN 342 (545)
Q Consensus 264 ~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~-~~~~~~~~i~id~d~~~~~~ 342 (545)
+||+||++|||.||++||+++|. ..++++++||+||++|++++++.+.++. .+.+..++||||.|+.+++
T Consensus 235 ~pv~tt~~gkg~~p~~hp~~~g~--------~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~vI~id~d~~~~~- 305 (554)
T TIGR03254 235 IPFLPMSMAKGLLPDTHPQSAAA--------ARSFALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFIQVDIEPTEMD- 305 (554)
T ss_pred CCEEEcCCcceeCCCCCchhhhH--------HHHHHHhcCCEEEEECCCCchhhccCchhhcCCCCcEEEcCCCHHHhC-
Confidence 99999999999999999999874 3567899999999999999888776553 3445678999999999886
Q ss_pred CCcccc----ccHHHHHHHHHHHhccC----chhhh----hhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCC--CC
Q 009060 343 GPSLGW----VFMADFLSALAKKLRKN----TTALE----NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSG--DT 408 (545)
Q Consensus 343 ~~~~~~----~d~~~~l~~L~~~l~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~ 408 (545)
..+..+ .|++.+|++|.+.+... ...|. .+++.+.............++++.++++.|++.+++ +.
T Consensus 306 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~~ 385 (554)
T TIGR03254 306 SNRPIAAPVVGDIGSVVQALLSAAKNGGVKPPADWRNAIKTKSEKNVAKMAERLSASESPMNYHGALEAIRDVLKDNPDI 385 (554)
T ss_pred CCcCCceEEecCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHhchhhhhhhcccCCCCcCHHHHHHHHHHhcCCCCCE
Confidence 322212 38999999999987532 11221 111111100000001123579999999999999974 77
Q ss_pred EEEecCCcccccccc-ccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeE
Q 009060 409 AVIAETGDSWFNCQK-LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSI 487 (545)
Q Consensus 409 ivv~d~G~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ 487 (545)
+++.|+|++..|..+ +...++++++.+.++|+|||++|+|||++++ ++|+||+++|||||+|++|||+|++||++|++
T Consensus 386 ivv~d~~~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala-~~~~vv~i~GDGsf~m~~~EL~Ta~r~~l~v~ 464 (554)
T TIGR03254 386 YLVNEGANTLDLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVE-TGKPVVALEGDSAFGFSGMEVETICRYNLPVC 464 (554)
T ss_pred EEEeCCchHHHHHHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhc-CCCcEEEEEcCchhcccHHHHHHHHHcCCCEE
Confidence 888888877766543 4455556688888999999999999999998 58999999999999999999999999999999
Q ss_pred EEEEeCCchhhh--hhhcCC--CCCCC-CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 488 IFLINNGGYTIE--VEIHDG--PYNVI-KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 488 ivV~NN~~~g~~--~~~~~~--~~~~l-~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+||+||++|... ...+.. .+.++ +++||+++|++||++ +++|++.+||
T Consensus 465 ~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~-----~~~v~~~~el 517 (554)
T TIGR03254 465 VVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMMKAFGGV-----GYNVTTPDEL 517 (554)
T ss_pred EEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHHHHHCCCe-----EEEeCCHHHH
Confidence 999999998442 222221 23444 789999999999996 6799998876
No 44
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=6.8e-88 Score=675.60 Aligned_cols=509 Identities=41% Similarity=0.656 Sum_probs=453.9
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcchHH
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLS 103 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n 103 (545)
++.+|++++|+++|.+.||+++||+||+.+++|+|.+...+++|+|.+.||.+|+||||||||++|.+++++|.|.|.+.
T Consensus 1 ~~~~tvG~YL~~RL~qlgi~~iFGVPGDyNL~lLD~i~~~~~lrWvGn~NELNaaYAADGYaR~~Gi~alvTTfGVGELS 80 (557)
T COG3961 1 SSPITVGDYLFDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARLNGISALVTTFGVGELS 80 (557)
T ss_pred CCceeHHHHHHHHHHhcCCceeeeCCCcccHHHHHHhhcCCCceeecccchhhhhhhhcchhhhcCceEEEEecccchhh
Confidence 36789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCC
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKES 183 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~ 183 (545)
+++||+.+|.+++|||.|+|-+++..+.++.++||++|++|+..+.+|++++++....+++.++++..|+|+++.++..+
T Consensus 81 A~NGIAGSYAE~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~~~ 160 (557)
T COG3961 81 ALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQR 160 (557)
T ss_pred hhcccchhhhhcCCEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhC
Q 009060 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (545)
Q Consensus 184 GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~ 263 (545)
+||||.+|.|+... ++..+. .|.......+++....+.++.++++|.++|+|+|++|..+.+.+..+++++|+++++
T Consensus 161 RPvYI~lP~dva~~--~~~~p~-~Pl~~~~~~sd~e~~~e~i~~i~~lI~~ak~p~ILad~~~~r~~~~~~~~~l~~~t~ 237 (557)
T COG3961 161 RPVYIGLPADVADL--PIEAPL-TPLDLQLKTSDPEALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLINATG 237 (557)
T ss_pred CCeEEEcchHHhcC--cCCCCC-CccccccCCCCHHHHHHHHHHHHHHHhccCCcEEecchhhhhhhhHHHHHHHHHhcC
Confidence 99999999999774 433221 222222222333445577899999999999999999999999999999999999999
Q ss_pred CceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecCC
Q 009060 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (545)
Q Consensus 264 ~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 343 (545)
+|+++++||||.|+|+||.|+|+|+|..+.+..+++++.||+||.+|+.++++.++.|+...+..++|+++.+...+. .
T Consensus 238 ~p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg~Ft~~~~~~~~i~~~~~~v~I~-~ 316 (557)
T COG3961 238 FPVATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGFTYQYKPANIIEIHPDSVKIK-D 316 (557)
T ss_pred CCeEEeecccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeeccccceeeecCcccEEEeccCeeEec-c
Confidence 999999999999999999999999999999999999999999999999999999999998777789999999999886 5
Q ss_pred CccccccHHHHHHHHHHHhccCchhh--hhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcccccc
Q 009060 344 PSLGWVFMADFLSALAKKLRKNTTAL--ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNC 421 (545)
Q Consensus 344 ~~~~~~d~~~~l~~L~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~ 421 (545)
..+..+.++++|+.|+.++..+.... .+..+.. + .........|++..++++.+.+.+.+++++++|.|+++|..
T Consensus 317 ~~f~~l~m~~~L~~L~~~i~~~~~~~~~~~~~~~~-p--~~~~~~~~~pLtq~~~w~~~~~fl~p~dviiaetGtS~FG~ 393 (557)
T COG3961 317 AVFTNLSMKDALQELAKKIDKRNLSAPPVAYPART-P--PTPYPPANEPLTQEWLWNTVQNFLKPGDVIIAETGTSFFGA 393 (557)
T ss_pred cccCCeeHHHHHHHHHHHhhhcccCCCCccCCCCC-C--CCCCCCCCCcccHHHHHHHHHhhCCCCCEEEEccccccccc
Confidence 66777889999999999887654211 1111111 0 01122345679999999999999999999999999999999
Q ss_pred ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhh
Q 009060 422 QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVE 501 (545)
Q Consensus 422 ~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~ 501 (545)
..+.+|++..++...-||++||++|+|+|+++|.|+|+||+++|||||+|+.||+.|..|++++.+++|+||+||-+++.
T Consensus 394 ~~~~lP~~~~~i~Q~lWGSIG~t~pAalGa~~A~~drR~IL~iGDGs~QlTvQEiStmiR~gl~p~ifvlNN~GYTIEr~ 473 (557)
T COG3961 394 LDIRLPKGATFISQPLWGSIGYTLPAALGAALAAPDRRVILFIGDGSLQLTVQEISTMIRWGLKPIIFVLNNDGYTIERA 473 (557)
T ss_pred eeeecCCCCeEEcccchhhcccccHhhhhhhhcCCCccEEEEEcCchhhhhHHHHHHHHHcCCCcEEEEEcCCCcEEEeh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hcC--CCCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 502 IHD--GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 502 ~~~--~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+|+ ++|+++.+|||.++-++||++..... +++++-+++
T Consensus 474 IHg~~~~YNdI~~Wd~~~l~~afg~~~~~~~-~~~~~~~~l 513 (557)
T COG3961 474 IHGPTAPYNDIQSWDYTALPEAFGAKNGEAK-FRATTGEEL 513 (557)
T ss_pred hcCCCcCcccccccchhhhhhhcCCCCceEE-EeecChHHH
Confidence 886 68999999999999999999864332 556665443
No 45
>PRK08266 hypothetical protein; Provisional
Probab=100.00 E-value=2.5e-87 Score=727.92 Aligned_cols=484 Identities=22% Similarity=0.285 Sum_probs=395.2
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-CCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchH
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGL 102 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~-~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~ 102 (545)
..||++++|++.|+++||++|||+||+++++|+++|.++ ++|++|.++||++|+|||+||+|+|| ++||++|+|||++
T Consensus 2 ~~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~ 81 (542)
T PRK08266 2 TTMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFGYARSTGRPGVCSVVPGPGVL 81 (542)
T ss_pred CCCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCeEEeeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHH
Confidence 457999999999999999999999999999999999764 57999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC
Q 009060 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (545)
Q Consensus 103 n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (545)
|+++|+++||.+++|||+|+|++++...+++.. +.++..||..+|+++|||+.++.+++++++.+++|++.|+++
T Consensus 82 N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~-----~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~ 156 (542)
T PRK08266 82 NAGAALLTAYGCNSPVLCLTGQIPSALIGKGRG-----HLHEMPDQLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSG 156 (542)
T ss_pred HHHHHHHHHHhhCCCEEEEecCCChhhccCCCC-----cceecccHhhHHhhhcceEEEeCCHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999876665421 112345899999999999999999999999999999999985
Q ss_pred -CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHH
Q 009060 183 -SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (545)
Q Consensus 183 -~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~ 261 (545)
+|||||+||.|++..+.+. . ..+.... .....++++.+++++++|.+||||+|++|.|+. ++.++|.+|+|+
T Consensus 157 ~~GPV~l~iP~dv~~~~~~~--~-~~~~~~~--~~~~~~~~~~i~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~ 229 (542)
T PRK08266 157 RPRPVALEMPWDVFGQRAPV--A-AAPPLRP--APPPAPDPDAIAAAAALIAAAKNPMIFVGGGAA--GAGEEIRELAEM 229 (542)
T ss_pred CCCcEEEEeCHhHhhCcccc--c-ccccccC--CCCCCCCHHHHHHHHHHHHhCCCCEEEECCChh--hHHHHHHHHHHH
Confidence 7999999999997743221 1 1111010 011123456789999999999999999999964 689999999999
Q ss_pred hCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceec
Q 009060 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (545)
Q Consensus 262 ~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 341 (545)
+|+||+||+++||.||++||+++|.. .+++++++||+||+||+++++. +..|..+.+..++||||.|+.+++
T Consensus 230 ~g~pv~tt~~~kg~~~~~hp~~~g~~-------~~~~~~~~aDlvl~lG~~~~~~-~~~~~~~~~~~~~i~id~d~~~~~ 301 (542)
T PRK08266 230 LQAPVVAFRSGRGIVSDRHPLGLNFA-------AAYELWPQTDVVIGIGSRLELP-TFRWPWRPDGLKVIRIDIDPTEMR 301 (542)
T ss_pred HCCCEEEeccccccCCCCCccccCCH-------HHHHHHHhCCEEEEeCCCcCcc-cccccccCCCCcEEEEECCHHHhC
Confidence 99999999999999999999998753 4667889999999999999877 445644445678999999999886
Q ss_pred CCCcccc----ccHHHHHHHHHHHhccC---chhh-hhhhhhcCCCCCCCcCCCCCCcCHH-HHHHHHHhhCCCCCEEEe
Q 009060 342 NGPSLGW----VFMADFLSALAKKLRKN---TTAL-ENYRRIYVPPGIPVKRAQNEPLRVN-VLFKHIQDMLSGDTAVIA 412 (545)
Q Consensus 342 ~~~~~~~----~d~~~~l~~L~~~l~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~ivv~ 412 (545)
+ +..+ .|++.+|++|.+.+... ...| ..+.+.+.... .. ...+++. .+++.|++.+|++++++.
T Consensus 302 -~-~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~l~~~lp~d~ivv~ 374 (542)
T PRK08266 302 -R-LKPDVAIVADAKAGTAALLDALSKAGSKRPSRRAELRELKAAAR---QR--IQAVQPQASYLRAIREALPDDGIFVD 374 (542)
T ss_pred -C-cCCCceEecCHHHHHHHHHHhhhhcccCchHHHHHHHHHHHhhh---hc--cccCCHHHHHHHHHHHhcCCCcEEEe
Confidence 3 3222 48999999999987542 1112 11211110000 00 0125665 489999999999999999
Q ss_pred cCCcccccccc-ccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEE
Q 009060 413 ETGDSWFNCQK-LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLI 491 (545)
Q Consensus 413 d~G~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~ 491 (545)
|+|++.+|..+ +....+++++.+.++|+|||++|+|||+++++|+++||+++|||||+|+++||+|+++|++|+++||+
T Consensus 375 d~g~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lp~aiGa~la~p~~~vv~v~GDG~f~~~~~eL~ta~~~~lpv~ivv~ 454 (542)
T PRK08266 375 ELSQVGFASWFAFPVYAPRTFVTCGYQGTLGYGFPTALGAKVANPDRPVVSITGDGGFMFGVQELATAVQHNIGVVTVVF 454 (542)
T ss_pred CCcHHHHHHHHhcccCCCCcEEeCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEEEE
Confidence 99998776543 45556667888889999999999999999999999999999999999999999999999999999999
Q ss_pred eCCchhhhh----hhcCCCC--CCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 492 NNGGYTIEV----EIHDGPY--NVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 492 NN~~~g~~~----~~~~~~~--~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
||++|++.+ ..+++.+ .+++++||.++|++||++ +++|++.+|+
T Consensus 455 NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~-----~~~v~~~~el 504 (542)
T PRK08266 455 NNNAYGNVRRDQKRRFGGRVVASDLVNPDFVKLAESFGVA-----AFRVDSPEEL 504 (542)
T ss_pred eCCcchHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCe-----EEEeCCHHHH
Confidence 999999821 1222322 455679999999999996 6788888776
No 46
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=100.00 E-value=3.8e-87 Score=729.05 Aligned_cols=494 Identities=20% Similarity=0.225 Sum_probs=393.2
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchH
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGL 102 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~ 102 (545)
.+.|+++++|++.|+++||+||||+||+.++++++++.+ ++|++|.+|||++|+|||+||+|+|| +|||++|+|||++
T Consensus 7 ~~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~-~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~ 85 (569)
T PRK09259 7 LQLTDGFHLVIDALKLNGIDTIYGVVGIPITDLARLAQA-EGIRYIGFRHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFL 85 (569)
T ss_pred cCCCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhh-CCCCEEeeCCHHHHHHHHHHHHHHhCCCEEEEEcCCccHH
Confidence 356799999999999999999999999999999998864 58999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC
Q 009060 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (545)
Q Consensus 103 n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (545)
|+++||++||.+++|||+|+|+.++...+.+ +..+| ..||..+|+++|||+.++.+++++++.++|||+.|+++
T Consensus 86 N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~---~~~~q---~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~~~A~~~ 159 (569)
T PRK09259 86 NGLTALANATTNCFPMIMISGSSEREIVDLQ---QGDYE---ELDQLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSG 159 (569)
T ss_pred HHHHHHHHHHhcCCCEEEEEccCCccccccc---CCCcc---ccchhhhhhhheeeeEEcCCHHHHHHHHHHHHHHhhhC
Confidence 9999999999999999999999876532211 11232 35889999999999999999999999999999999995
Q ss_pred -CCcEEEEeCCCCCCCCCCCCCCC-CCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHH
Q 009060 183 -SKPVYISISCNLPGIPHPTFARD-PVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELAD 260 (545)
Q Consensus 183 -~GPV~l~iP~dv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae 260 (545)
||||||+||.|++..+.+..... +......+. ....+++..+++++++|.+||||+|++|.|++++++.+++++|||
T Consensus 160 ~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~L~~AkrPvIi~G~g~~~~~a~~~l~~lae 238 (569)
T PRK09259 160 RPGGVYLDLPAKVLAQTMDADEALTSLVKVVDPA-PAQLPAPEAVDRALDLLKKAKRPLIILGKGAAYAQADEQIREFVE 238 (569)
T ss_pred CCCcEEEEeCHHHhhCcccccccccccccccCCC-CCCCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHH
Confidence 79999999999987432211000 000000111 111234678999999999999999999999999899999999999
Q ss_pred HhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCccccc-ccCCCCCcEEEEcCCcce
Q 009060 261 ATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGY-SLLIKKEKAIIVQPHRVT 339 (545)
Q Consensus 261 ~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~-~~~~~~~~~i~id~d~~~ 339 (545)
++++||+||++|||.||++||+++|. ..++++++||+||+||++++++.+..+ ..+.++.++||||.|+.+
T Consensus 239 ~l~iPV~tt~~gkg~~~e~hpl~~G~--------~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~ii~Id~d~~~ 310 (569)
T PRK09259 239 KTGIPFLPMSMAKGLLPDTHPQSAAA--------ARSLALANADVVLLVGARLNWLLSHGKGKTWGADKKFIQIDIEPQE 310 (569)
T ss_pred HHCCCEEecccccccCCCCChhhhhH--------HHHHHHhcCCEEEEeCCCCchhcccCchhccCCCCcEEEecCChHH
Confidence 99999999999999999999999985 346778999999999999988765444 234466789999999998
Q ss_pred ecCCCccc----cccHHHHHHHHHHHhccC----chhhh----hhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCC--
Q 009060 340 VGNGPSLG----WVFMADFLSALAKKLRKN----TTALE----NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLS-- 405 (545)
Q Consensus 340 ~~~~~~~~----~~d~~~~l~~L~~~l~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-- 405 (545)
++ ..+.. ..|++.+|++|.+.++.+ ...|. .+++...............++++..+++.|++.++
T Consensus 311 ~~-~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~ 389 (569)
T PRK09259 311 ID-SNRPIAAPVVGDIGSVMQALLAGLKQNTFKAPAEWLDALAERKEKNAAKMAEKLSTDTQPMNFYNALGAIRDVLKEN 389 (569)
T ss_pred hc-CCccCceeEecCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHhChhhhhhhhcCCCCCcCHHHHHHHHHHHhCCC
Confidence 86 22211 238999999999988532 11221 11111111100000113357999999999999995
Q ss_pred CCCEEEecCCccccccc-cccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCC
Q 009060 406 GDTAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQ 484 (545)
Q Consensus 406 ~~~ivv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~l 484 (545)
+|.+++.|+|++..|.. ++....+++++.+.++|+|||++|+|||++++ ++|+||+++|||||+|+++||+|++||++
T Consensus 390 ~d~iv~~~~~~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la-~~~~vv~i~GDG~f~m~~~EL~Ta~r~~l 468 (569)
T PRK09259 390 PDIYLVNEGANTLDLARNIIDMYKPRHRLDCGTWGVMGIGMGYAIAAAVE-TGKPVVAIEGDSAFGFSGMEVETICRYNL 468 (569)
T ss_pred CCEEEEeCchHHHHHHHHhcccCCCCceEeCCCCccccccHHHHHHHHhc-CCCcEEEEecCccccccHHHHHHHHHcCC
Confidence 48888888777765554 34455555688888899999999999999999 69999999999999999999999999999
Q ss_pred CeEEEEEeCCchhh--hhhhcC-CC--CCCC-CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 485 RSIIFLINNGGYTI--EVEIHD-GP--YNVI-KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 485 pi~ivV~NN~~~g~--~~~~~~-~~--~~~l-~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
|+++||+||++|.. +...+. .. ..++ +++||+++|++||++ +++|++.+|+
T Consensus 469 pi~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~-----~~~v~~~~el 525 (569)
T PRK09259 469 PVTVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHARYDKMMEAFGGV-----GYNVTTPDEL 525 (569)
T ss_pred CEEEEEEeChhHHHHHHHHhhcCCCccccccCCCCCHHHHHHHCCCe-----EEEECCHHHH
Confidence 99999999999732 222222 12 2333 689999999999995 7799998876
No 47
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=2.9e-86 Score=723.92 Aligned_cols=500 Identities=23% Similarity=0.278 Sum_probs=400.9
Q ss_pred cCCCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcc
Q 009060 22 GGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVG 100 (545)
Q Consensus 22 ~~~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG 100 (545)
+....++++++|++.|+++||++|||+|+.. .+++++.+ ++|++|.+|||++|+|||+||+|+|| ++||++|+|||
T Consensus 9 ~~~~~~~~a~~i~~~L~~~GV~~vFG~~~~~--~~~~~~~~-~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG 85 (578)
T PRK06112 9 GFTLNGTVAHAIARALKRHGVEQIFGQSLPS--ALFLAAEA-IGIRQIAYRTENAGGAMADGYARVSGKVAVVTAQNGPA 85 (578)
T ss_pred CCccCcCHHHHHHHHHHHCCCCEEeecccch--HhHHHHhh-cCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEeCCCCc
Confidence 3457789999999999999999999998654 24566654 57999999999999999999999999 99999999999
Q ss_pred hHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhh
Q 009060 101 GLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTAL 180 (545)
Q Consensus 101 ~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~ 180 (545)
++|+++||++||.+++|||+|+|+.+....+++ .+| .+||..+|+++|||+.++.+++++++.+++||+.|+
T Consensus 86 ~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~Q---~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~ 157 (578)
T PRK06112 86 ATLLVAPLAEALKASVPIVALVQDVNRDQTDRN-----AFQ---ELDHIALFQSCTKWVRRVTVAERIDDYVDQAFTAAT 157 (578)
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCCccccCCCC-----Ccc---ccChhhhhccccceEEEeCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998876665 233 267899999999999999999999999999999999
Q ss_pred hC-CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCC-CCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHH
Q 009060 181 KE-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKV-SNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIEL 258 (545)
Q Consensus 181 ~~-~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~l 258 (545)
++ +|||||+||.|++..+.+.. ..+.+....... ....+++..+++++++|.+||||+|++|.|+.++++.+++.+|
T Consensus 158 ~~~~GPv~l~iP~Dv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~l 236 (578)
T PRK06112 158 SGRPGPVVLLLPADLLTAAAAAP-AAPRSNSLGHFPLDRTVPAPQRLAEAASLLAQAQRPVVVAGGGVHISGASAALAAL 236 (578)
T ss_pred hCCCCcEEEEcCHhHhhCccccc-cCcccccccCCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHHH
Confidence 96 79999999999987432111 011110000000 0112356778999999999999999999999999999999999
Q ss_pred HHHhCCceEeCCCCccCCCCCCCCccceecCCC-C----CHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEE
Q 009060 259 ADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAV-S----SSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIV 333 (545)
Q Consensus 259 ae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~-~----~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~i 333 (545)
+|++|+||++|+++||.||++||+++|.+ |.. + .+.++++++++|+||+||++++++.+..|..+.++.++|||
T Consensus 237 ae~lg~pV~~t~~~kg~~p~~hp~~~G~~-g~~~~~~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~i 315 (578)
T PRK06112 237 QSLAGLPVATTNMGKGAVDETHPLSLGVV-GSLMGPRSPGRHLRDLVREADVVLLVGTRTNQNGTDSWSLYPEQAQYIHI 315 (578)
T ss_pred HHHhCCCEEEcccccccCCCCCccccccc-cccCCCccchHHHHHHHHhCCEEEEECCCCCccccccccccCCCCeEEEE
Confidence 99999999999999999999999999986 432 2 24678889999999999999998887777655567799999
Q ss_pred cCCcceecCCCcc---ccccHHHHHHHHHHHhccCc--------hhhh-hhhh---hcCCCCCCCcCCCCCCcCHHHHHH
Q 009060 334 QPHRVTVGNGPSL---GWVFMADFLSALAKKLRKNT--------TALE-NYRR---IYVPPGIPVKRAQNEPLRVNVLFK 398 (545)
Q Consensus 334 d~d~~~~~~~~~~---~~~d~~~~l~~L~~~l~~~~--------~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 398 (545)
|.|+.+++ +++. -..|++.+|++|++.+...+ ..|. .+.+ ...............++++.++++
T Consensus 316 d~d~~~~~-~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~ 394 (578)
T PRK06112 316 DVDGEEVG-RNYEALRLVGDARLTLAALTDALRGRDLAARAGRRAALEPAIAAGREAHREDSAPVALSDASPIRPERIMA 394 (578)
T ss_pred ECChHHhC-ccccceEEEeCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhhhhhhhhhcCCCCCcCHHHHHH
Confidence 99999886 2221 12489999999988774321 1121 1111 110000000112234699999999
Q ss_pred HHHhhCCCCCEEEecCCccccccc-cccccCC-CeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHH
Q 009060 399 HIQDMLSGDTAVIAETGDSWFNCQ-KLRLPEN-CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEI 476 (545)
Q Consensus 399 ~l~~~l~~~~ivv~d~G~~~~~~~-~~~~~~~-~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL 476 (545)
.|++.+|++++++.|+|++..|.. ++...++ .+++.+.++|+|||++|+|+|+++++|+|+||+++|||||+|+++||
T Consensus 395 ~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i~GDGsf~~~~~el 474 (578)
T PRK06112 395 ELQAVLTGDTIVVADASYSSIWVANFLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVARPGAPVICLVGDGGFAHVWAEL 474 (578)
T ss_pred HHHHhCCCCCEEEEcccHHHHHHHHhcCccCCCceEECCCCccccccHHHHHHHHHhhCCCCcEEEEEcchHHHhHHHHH
Confidence 999999999999999998876653 4444333 35888889999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEEeCCchhhhhh----hcCC--CCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 477 STMIRCGQRSIIFLINNGGYTIEVE----IHDG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 477 ~ta~~~~lpi~ivV~NN~~~g~~~~----~~~~--~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+|+++|++|+++||+||++|++.+. .++. .+.+++++||.++|++||++ +++|++.+|+
T Consensus 475 ~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~-----~~~v~~~~el 539 (578)
T PRK06112 475 ETARRMGVPVTIVVLNNGILGFQKHAETVKFGTHTDACHFAAVDHAAIARACGCD-----GVRVEDPAEL 539 (578)
T ss_pred HHHHHhCCCeEEEEEeCCccCCEEeccccccCCccccCcCCCCCHHHHHHHCCCe-----EEEeCCHHHH
Confidence 9999999999999999999998321 1122 12355789999999999996 6788888776
No 48
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=3.9e-86 Score=719.86 Aligned_cols=492 Identities=19% Similarity=0.202 Sum_probs=392.7
Q ss_pred CccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCC-----CCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCc
Q 009060 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP-----ELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTV 99 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~-----~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~Gp 99 (545)
.+|++|+|++.|+++||+||||+||+++++|++++.+++ +|++|.+|||++|+|||+||+|+|| +|||++|+||
T Consensus 6 ~~~~a~~l~~~L~~~GV~~iFgvpG~~~~~l~dal~~~~~~g~~~i~~V~~rhE~~A~~~Adgyar~tgk~gv~~~t~GP 85 (569)
T PRK08327 6 MYTAAELFLELLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVAISMAHGYALVTGKPQAVMVHVDV 85 (569)
T ss_pred cccHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHHhhhhcCCCCCcEEecCCHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 378999999999999999999999999999999997542 3999999999999999999999999 9999999999
Q ss_pred chHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCc---ccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHH
Q 009060 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNR---ILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAI 176 (545)
Q Consensus 100 G~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~ 176 (545)
|++|+++||++||.+++|||+|+|+.+....+++. ..++.+| +..||..+++++|||+.++++++++++.+++|+
T Consensus 86 G~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~q--e~~d~~~~~~~vtk~~~~v~~~~~~~~~l~~A~ 163 (569)
T PRK08327 86 GTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQ--EMRDQGGLVREYVKWDYEIRRGDQIGEVVARAI 163 (569)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccch--hhhhHHHHHhhhhhhhcccCCHHHHHHHHHHHH
Confidence 99999999999999999999999998877655421 1112233 336899999999999999999999999999999
Q ss_pred HHhhhC-CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHH
Q 009060 177 STALKE-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAF 255 (545)
Q Consensus 177 ~~a~~~-~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l 255 (545)
+.|.++ ||||||+||.|++..+.+... .+.+.... .....++++.+++++++|++||||+|++|.|+.++++.++|
T Consensus 164 ~~a~~~~~GPV~i~iP~Dv~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l 240 (569)
T PRK08327 164 QIAMSEPKGPVYLTLPREVLAEEVPEVK-ADAGRQMA--PAPPAPDPEDIARAAEMLAAAERPVIITWRAGRTAEGFASL 240 (569)
T ss_pred HHHhcCCCCCEEEECcHHHHhhhccccc-cCccccCC--CCCCCCCHHHHHHHHHHHHhCCCCEEEEecccCCcccHHHH
Confidence 999985 899999999999874322110 01000011 11112356789999999999999999999999999999999
Q ss_pred HHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcC
Q 009060 256 IELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQP 335 (545)
Q Consensus 256 ~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~ 335 (545)
.+|||++++||+||++|||.||++||+++|.+ ++++++++|+||++|+++++..+.. .+.++.++||||.
T Consensus 241 ~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~--------~~~~~~~aDlvl~lG~~l~~~~~~~--~~~~~~~vi~Id~ 310 (569)
T PRK08327 241 RRLAEELAIPVVEYAGEVVNYPSDHPLHLGPD--------PRADLAEADLVLVVDSDVPWIPKKI--RPDADARVIQIDV 310 (569)
T ss_pred HHHHHHhCCCEEecCCCceeCCCCCccccccc--------cchhhhhCCEEEEeCCCCCCccccc--cCCCCCeEEEEeC
Confidence 99999999999999999999999999999863 5677899999999999987654432 1345678999999
Q ss_pred CcceecC--CCcccc----ccHHHHHHHHHHHhccCch-----------hhhhhhhhcCCCCCC--CcCCCCCCcCHHHH
Q 009060 336 HRVTVGN--GPSLGW----VFMADFLSALAKKLRKNTT-----------ALENYRRIYVPPGIP--VKRAQNEPLRVNVL 396 (545)
Q Consensus 336 d~~~~~~--~~~~~~----~d~~~~l~~L~~~l~~~~~-----------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 396 (545)
|+.+++. +++..+ .|++.+|++|++.+..+.. .|..++......... .....+.++++.++
T Consensus 311 d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 390 (569)
T PRK08327 311 DPLKSRIPLWGFPCDLCIQADTSTALDQLEERLKSLASAERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGPITPAYL 390 (569)
T ss_pred ChhhhcccccCcceeEEEecCHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHHhhhhhhhhhhccCCCCCcCHHHH
Confidence 9988752 122222 4899999999988754211 122221111010000 01123457999999
Q ss_pred HHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHH-
Q 009060 397 FKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQE- 475 (545)
Q Consensus 397 ~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~e- 475 (545)
+++|++.+|++.+++.+.+ +...++..+++.+|+.+.++|+|||++|+|+|+++++|+|+||+++|||||+|+.+|
T Consensus 391 ~~~l~~~l~~~~~vv~~~~---~~~~~~~~~~~~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~e~ 467 (569)
T PRK08327 391 SYCLGEVADEYDAIVTEYP---FVPRQARLNKPGSYFGDGSAGGLGWALGAALGAKLATPDRLVIATVGDGSFIFGVPEA 467 (569)
T ss_pred HHHHHHhcCccceEEeccH---HHHHhcCccCCCCeeeCCCCCCCCcchHHHHHHhhcCCCCeEEEEecCcceeecCcHH
Confidence 9999999999888886543 223456666677799999999999999999999999999999999999999999876
Q ss_pred -HHHHHHhCCCeEEEEEeCCchhhhh----hhcCC-------C--CCCC-CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 476 -ISTMIRCGQRSIIFLINNGGYTIEV----EIHDG-------P--YNVI-KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 476 -L~ta~~~~lpi~ivV~NN~~~g~~~----~~~~~-------~--~~~l-~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
|+|++|+++|+++||+||++|++.+ .++.. . ...+ +++||+++|++||++ +.+|++.+|+
T Consensus 468 ~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~-----~~~v~~~~el 542 (569)
T PRK08327 468 AHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGY-----GERVEDPEEL 542 (569)
T ss_pred HHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccccccccccccccCCCCCCHHHHHHhCCCC-----ceEeCCHHHH
Confidence 9999999999999999999999822 12211 1 2334 679999999999996 5678887776
No 49
>PRK07586 hypothetical protein; Validated
Probab=100.00 E-value=2.4e-85 Score=708.07 Aligned_cols=472 Identities=20% Similarity=0.137 Sum_probs=376.1
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHH
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (545)
||++|+|++.|+++||+||||+||+++++|++++.++++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~ 80 (514)
T PRK07586 1 MNGAESLVRTLVDGGVDVCFANPGTSEMHFVAALDRVPGMRCVLGLFEGVATGAADGYARMAGKPAATLLHLGPGLANGL 80 (514)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHH
Confidence 689999999999999999999999999999999976568999999999999999999999999 9999999999999999
Q ss_pred HHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-CC
Q 009060 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (545)
Q Consensus 106 ~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~G 184 (545)
+||++||.+++|||+|+|+.++...+++. ++ ..||..+++++|||+.++++++++++.|+|||+.|+++ +|
T Consensus 81 ~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~-----~q---~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~~G 152 (514)
T PRK07586 81 ANLHNARRARTPIVNIVGDHATYHRKYDA-----PL---TSDIEALARPVSGWVRRSESAADVAADAAAAVAAARGAPGQ 152 (514)
T ss_pred HHHHHHHhcCCCEEEEecCCchhccCCCc-----cc---ccchhhhhccccceeeecCCHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999887655542 22 35788999999999999999999999999999999996 79
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCC
Q 009060 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (545)
Q Consensus 185 PV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~ 264 (545)
||||+||.|++..+ ...+.. +....+ ...++++.+++++++|.+||||+|++|.|+.++++.+++++|+|++|+
T Consensus 153 PV~l~iP~Dv~~~~--~~~~~~-~~~~~~---~~~~~~~~v~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~ 226 (514)
T PRK07586 153 VATLILPADVAWSE--GGPPAP-PPPAPA---PAAVDPAAVEAAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGA 226 (514)
T ss_pred cEEEEeccchhccc--cccccc-cCCCCC---CCCCCHHHHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCC
Confidence 99999999998742 211111 111111 112356789999999999999999999999999999999999999999
Q ss_pred ceEeCC------CCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcc
Q 009060 265 PIAIMP------SGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRV 338 (545)
Q Consensus 265 Pv~tt~------~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~ 338 (545)
||+|+. ++||+||++|+.+.+ +.+++++++||+||++|+++... ...+ .....++++.+.+..
T Consensus 227 pV~t~~~~~~~~~gkg~~~~~~~~~~~--------~~~~~~~~~aDlvl~vG~~~~~~-~~~~--~~~~~~~~~~~~~~~ 295 (514)
T PRK07586 227 RLLAETFPARMERGAGRPAVERLPYFA--------EQALAQLAGVRHLVLVGAKAPVA-FFAY--PGKPSRLVPEGCEVH 295 (514)
T ss_pred CEEecccccccccCCCCCCcccccchH--------HHHHHHHhcCCEEEEECCCCccc-cccc--CCCccccCCCCceEE
Confidence 999864 599999998877653 35677899999999999986321 1111 001112222222222
Q ss_pred eecCCCccccccHHHHHHHHHHHhccCchhhhhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccc
Q 009060 339 TVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSW 418 (545)
Q Consensus 339 ~~~~~~~~~~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~ 418 (545)
.+. ....|++.+|++|.+.++...... .+.... .......++++.++++.|++.+|++++++.|+|++.
T Consensus 296 ~~~----~~~~d~~~~l~~L~~~l~~~~~~~-~~~~~~------~~~~~~~~i~~~~~~~~l~~~l~~~~ivv~d~g~~~ 364 (514)
T PRK07586 296 TLA----GPGEDAAAALEALADALGAKPAAP-PLAAPA------RPPLPTGALTPEAIAQVIAALLPENAIVVDESITSG 364 (514)
T ss_pred EEC----CCcccHHHHHHHHHHhhcccccch-hhhhcc------ccCCCCCCcCHHHHHHHHHHhCCCCeEEEeCCCcCH
Confidence 221 113489999999988775322111 110000 011124569999999999999999999999999987
Q ss_pred cccc-cccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchh
Q 009060 419 FNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYT 497 (545)
Q Consensus 419 ~~~~-~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~~g 497 (545)
+|.. ++....+.+++.+.+ |+|||++|+|||+++|.|+|+||+++|||||+|++|||||++||++|+++||+||++|+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~-g~mG~~lpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~EL~Ta~~~~lpv~ivV~NN~~y~ 443 (514)
T PRK07586 365 RGFFPATAGAAPHDWLTLTG-GAIGQGLPLATGAAVACPDRKVLALQGDGSAMYTIQALWTQARENLDVTTVIFANRAYA 443 (514)
T ss_pred HHHHHhccccCCCCEEccCC-cccccHHHHHHHHHHhCCCCeEEEEEechHHHhHHHHHHHHHHcCCCCEEEEEeCchhH
Confidence 7654 344555566776655 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh----hcC---C----CCCCC--CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 498 IEVE----IHD---G----PYNVI--KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 498 ~~~~----~~~---~----~~~~l--~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+.+. ... + .+.++ +++||.++|++||++ +++|++.+||
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~-----~~~V~~~~el 494 (514)
T PRK07586 444 ILRGELARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGVP-----ARRVTTAEEF 494 (514)
T ss_pred HHHHHHHHhcCCCCCccccccccCCCCCCCHHHHHHHCCCc-----EEEeCCHHHH
Confidence 8321 111 1 12334 468999999999996 6788888776
No 50
>PRK12474 hypothetical protein; Provisional
Probab=100.00 E-value=4.1e-85 Score=705.34 Aligned_cols=469 Identities=17% Similarity=0.124 Sum_probs=375.6
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHH
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (545)
.+||++|+|++.|+++||+||||+||+.+++|++++.+.++|++|.+|||++|+||||||+|+|| ++||++|+|||++|
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N 82 (518)
T PRK12474 3 QTMNGADSVVDTLLNCGVEVCFANPGTSEMHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIAGKPAVTLLHLGPGLAN 82 (518)
T ss_pred cCccHHHHHHHHHHHCCCCEEEECCCcchHHHHHHhhccCCceEEEecchHHHHHHHHHHHHHhCCCEEEEEccchhHhH
Confidence 45799999999999999999999999999999999976568999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (545)
+++||++||.+++|||+|+|+.++...+++. ++ ..||..+++++|||+.++.+++++++.|+|||+.|.++
T Consensus 83 ~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~-----~q---~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~ 154 (518)
T PRK12474 83 GLANLHNARRAASPIVNIVGDHAVEHLQYDA-----PL---TSDIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAP 154 (518)
T ss_pred hHHHHHHHhhcCCCEEEEeccCchhhcCCCC-----cc---ccCHHHhhhcccceeeecCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998877555442 22 24788999999999999999999999999999999996
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHh
Q 009060 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (545)
Q Consensus 183 ~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~ 262 (545)
+|||||+||.|++..+.+. ...+.+ .. .. ..++.+.+++++++|.+||||+|++|.|+.++++.+++++|+|++
T Consensus 155 ~GPV~l~iP~Dv~~~~~~~-~~~~~~--~~-~~--~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~ 228 (518)
T PRK12474 155 GGIATLIMPADVAWNEAAY-AAQPLR--GI-GP--APVAAETVERIAALLRNGKKSALLLRGSALRGAPLEAAGRIQAKT 228 (518)
T ss_pred CCcEEEEechhhhcccccC-CcCCCC--CC-CC--CCCCHHHHHHHHHHHHcCCCcEEEECCccchhhHHHHHHHHHHHH
Confidence 6999999999998642211 111111 10 11 123567899999999999999999999999989999999999999
Q ss_pred CCceEeC------CCCccCCCC-CCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCC--cc-cccc-cCCCCCcEE
Q 009060 263 GYPIAIM------PSGKGLVPE-HHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDY--SS-VGYS-LLIKKEKAI 331 (545)
Q Consensus 263 ~~Pv~tt------~~~kg~~~~-~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~--~~-~~~~-~~~~~~~~i 331 (545)
|+||++| +++||.||+ +||++. +...+++++||+||++|++++.. .. ..+. .+.+..+++
T Consensus 229 g~PV~~t~~~~~~~~gkg~~~~~~~~~~~---------~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~ 299 (518)
T PRK12474 229 GVRLYCDTFAPRIERGAGRVPIERIPYFH---------EQITAFLKDVEQLVLVGAKPPVSFFAYPGKPSWGAPPGCEIV 299 (518)
T ss_pred CCCEEEecCcccccCCCCCCCCcccccch---------HHHHHHHhhCCEEEEECCCCCccccccCCCccccCCCCCEEE
Confidence 9999975 469999995 667753 24567899999999999996321 11 1111 122345666
Q ss_pred EEcCCcceecCCCccccccHHHHHHHHHHHhccCchhhhhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEE
Q 009060 332 IVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (545)
Q Consensus 332 ~id~d~~~~~~~~~~~~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv 411 (545)
+++.. +.|++.+|++|.+.++.+.. +.... ... .......++++.+++++|++.+|+|++++
T Consensus 300 ~~~~~-----------~~d~~~~l~~L~~~l~~~~~----~~~~~-~~~--~~~~~~~~i~~~~~~~~l~~~l~~d~iv~ 361 (518)
T PRK12474 300 YLAQP-----------DEDLAQALQDLADAVDAPAE----PAART-PLA--LPALPKGALNSLGVAQLIAHRTPDQAIYA 361 (518)
T ss_pred EECCC-----------CcCHHHHHHHHHHhcccccc----ccccc-ccc--ccCCCCCCcCHHHHHHHHHHHCCCCeEEE
Confidence 66531 24789999999887753211 10000 000 01112346999999999999999999999
Q ss_pred ecCCccccccc-cccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEE
Q 009060 412 AETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFL 490 (545)
Q Consensus 412 ~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV 490 (545)
.|+|++..|.. ++....+.+++.+. +|+|||++|+|||+++|+|+|+||+|+|||||+|++|||+|++||++|+++||
T Consensus 362 ~d~g~~~~~~~~~~~~~~p~~~~~~~-~gsmG~glpaAiGa~lA~p~r~vv~i~GDG~f~m~~qEL~Ta~r~~lpv~iiV 440 (518)
T PRK12474 362 DEALTSGLFFDMSYDRARPHTHLPLT-GGSIGQGLPLAAGAAVAAPDRKVVCPQGDGGAAYTMQALWTMARENLDVTVVI 440 (518)
T ss_pred ECCCcCHHHHHHhhcccCCCCEEccC-CCccCccHHHHHHHHHHCCCCcEEEEEcCchhcchHHHHHHHHHHCCCcEEEE
Confidence 99999877654 44445555677654 49999999999999999999999999999999999999999999999999999
Q ss_pred EeCCchhhhh-hh--c----CC----CCCCC--CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 491 INNGGYTIEV-EI--H----DG----PYNVI--KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 491 ~NN~~~g~~~-~~--~----~~----~~~~l--~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+||++|++.+ .+ . .+ .+.++ +++||+++|++||++ +.+|++.+||
T Consensus 441 ~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~-----~~rv~~~~eL 498 (518)
T PRK12474 441 FANRSYAILNGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGVE-----ASRATTAEEF 498 (518)
T ss_pred EcCCcchHHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHCCCe-----EEEeCCHHHH
Confidence 9999999832 11 1 11 12333 468999999999995 7899998886
No 51
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=100.00 E-value=1.3e-84 Score=703.95 Aligned_cols=488 Identities=21% Similarity=0.243 Sum_probs=396.6
Q ss_pred CCCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcch
Q 009060 23 GASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGG 101 (545)
Q Consensus 23 ~~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~ 101 (545)
....+|++++|++.|+++||+||||+||+++++|++++.+ +|++|.+|||++|+|||+||+|+|| ++||++|+|||+
T Consensus 8 ~~~~~~~a~~l~~~L~~~GV~~vFgiPG~~~~~l~dal~~--~i~~i~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~ 85 (530)
T PRK07092 8 AAAMTTVRDATIDLLRRFGITTVFGNPGSTELPFLRDFPD--DFRYVLGLQEAVVVGMADGYAQATGNAAFVNLHSAAGV 85 (530)
T ss_pred ccccCcHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhh--cCCEEEEccHHHHHHHHHHHHHHhCCceEEEeccCchH
Confidence 3345899999999999999999999999999999999963 6999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhh
Q 009060 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK 181 (545)
Q Consensus 102 ~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~ 181 (545)
+|+++||++||.+++|||+|+|+.+....+++.+ + +..||..+|+++|||+.++.+++++++.+++|++.|++
T Consensus 86 ~N~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~-----~--~~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~ 158 (530)
T PRK07092 86 GNAMGNLFTAFKNHTPLVITAGQQARSILPFEPF-----L--AAVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQ 158 (530)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCcccccCccch-----h--cccCHHHhhcccccceeecCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999886665531 1 22467899999999999999999999999999999998
Q ss_pred C-CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHH
Q 009060 182 E-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELAD 260 (545)
Q Consensus 182 ~-~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae 260 (545)
+ +|||||+||.|++..+ .... ...... ....+++..+++++++|.+||||+|++|.|++++++.++|++|+|
T Consensus 159 ~~~GPv~l~iP~d~~~~~--~~~~--~~~~~~---~~~~~~~~~~~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae 231 (530)
T PRK07092 159 PPRGPVFVSIPYDDWDQP--AEPL--PARTVS---SAVRPDPAALARLGDALDAARRPALVVGPAVDRAGAWDDAVRLAE 231 (530)
T ss_pred CCCCcEEEEccHHHhhCc--cccc--ccCCCC---CCCCCCHHHHHHHHHHHHcCCCcEEEECCCcchhhhHHHHHHHHH
Confidence 6 7999999999997742 2111 110011 111235667999999999999999999999998889999999999
Q ss_pred HhCCceEeCCC-CccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccc-cCCCCCcEEEEcCCcc
Q 009060 261 ATGYPIAIMPS-GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYS-LLIKKEKAIIVQPHRV 338 (545)
Q Consensus 261 ~~~~Pv~tt~~-~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~-~~~~~~~~i~id~d~~ 338 (545)
++|+||++|++ +||.||++||+++|.+ |. +....++++++||+||++|+++.+.....|. .+.++.++||||.|+.
T Consensus 232 ~lg~pV~~t~~~~kg~~~~~hp~~~G~~-g~-~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~ 309 (530)
T PRK07092 232 RHRAPVWVAPMSGRCSFPEDHPLFAGFL-PA-SREKISALLDGHDLVLVIGAPVFTYHVEGPGPHLPEGAELVQLTDDPG 309 (530)
T ss_pred HHCCcEEEecCCCcCcCCCCCccccCcC-Cc-cHHHHHHHHhhCCEEEEECCcccccccCCccccCCCCCeEEEEeCChH
Confidence 99999999876 7999999999999986 43 3456778999999999999985444443332 2445678999999998
Q ss_pred eecCCCccc---cccHHHHHHHHHHHhccCchhhhhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCC
Q 009060 339 TVGNGPSLG---WVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415 (545)
Q Consensus 339 ~~~~~~~~~---~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G 415 (545)
+++ ..... ..|++.+|++|++.++.+......+++. .. .......++++..+++.|++.+|++++++.|+|
T Consensus 310 ~~~-~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~g 383 (530)
T PRK07092 310 EAA-WAPMGDAIVGDIRLALRDLLALLPPSARPAPPARPM--PP---PAPAPGEPLSVAFVLQTLAALRPADAIVVEEAP 383 (530)
T ss_pred Hhc-CCCCCCcccCCHHHHHHHHHHhhccccccchhhhhc--cc---cccCCCCCcCHHHHHHHHHHhCCCCeEEEeCCC
Confidence 875 22211 2389999999999886432111111111 00 011134579999999999999999999999999
Q ss_pred ccccccc-cccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCC
Q 009060 416 DSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNG 494 (545)
Q Consensus 416 ~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~ 494 (545)
++..|.. ++....+.+++.+ .+|+|||++|+|+|++++.|+++||+++|||+|+|+.+||+|++++++|+++||+||+
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~-~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~lp~~~vv~NN~ 462 (530)
T PRK07092 384 STRPAMQEHLPMRRQGSFYTM-ASGGLGYGLPAAVGVALAQPGRRVIGLIGDGSAMYSIQALWSAAQLKLPVTFVILNNG 462 (530)
T ss_pred ccHHHHHHhcCcCCCCceEcc-CCCcccchHHHHHHHHHhCCCCeEEEEEeCchHhhhHHHHHHHHHhCCCcEEEEEeCh
Confidence 8876653 4555555667754 4699999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhh----hcCC--CCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 495 GYTIEVE----IHDG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 495 ~~g~~~~----~~~~--~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+|++.+. +..+ .+.+++++||.++|++||++ +++|++.+|+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~-----~~~v~~~~~l 509 (530)
T PRK07092 463 RYGALRWFAPVFGVRDVPGLDLPGLDFVALARGYGCE-----AVRVSDAAEL 509 (530)
T ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHCCCe-----EEEeCCHHHH
Confidence 9998221 1111 23456789999999999996 6788887765
No 52
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=3.2e-85 Score=647.18 Aligned_cols=495 Identities=21% Similarity=0.252 Sum_probs=409.7
Q ss_pred CCCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcch
Q 009060 23 GASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGG 101 (545)
Q Consensus 23 ~~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~ 101 (545)
.++++++++.+++.|+++||++|||+-|.++.+|..+.++. ||+||.+|||++|+|+|++|+++|| ||||++++|||.
T Consensus 10 ~~~~~~g~~~vA~~Lk~~gVe~iFgiVGipV~el~~aaqal-GIk~I~~RnEqaA~yAA~A~gyLt~kpGV~lVvsGPGl 88 (571)
T KOG1185|consen 10 KASSRHGGELVAAVLKAQGVEYIFGIVGIPVIELAVAAQAL-GIKFIGTRNEQAAVYAASAYGYLTGKPGVLLVVSGPGL 88 (571)
T ss_pred ccccccHHHHHHHHHHHcCceEEEEEeccchHHHHHHHHHc-CCeEeecccHHHHHHHHHHhhhhcCCCeEEEEecCChH
Confidence 57889999999999999999999999999999999999875 9999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhh
Q 009060 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK 181 (545)
Q Consensus 102 ~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~ 181 (545)
+|.++|++||+.+++|||+|.|..++.+.++| .+| -.||+.+++|+||++.+++++++++..+++|++.|++
T Consensus 89 ~hal~gv~NA~~n~wPll~IgGsa~~~~~~rG-----afQ---e~dQvel~rp~~K~~~r~~~~~~I~~~i~kA~r~a~~ 160 (571)
T KOG1185|consen 89 THALAGVANAQMNCWPLLLIGGSASTLLENRG-----AFQ---ELDQVELFRPLCKFVARPTSVRDIPPTIRKAVRAAMS 160 (571)
T ss_pred HHHHHHhhhhhhccCcEEEEecccchhhhccc-----ccc---cccHHhhhhhhhhhccCCCChhhccHHHHHHHHHHhc
Confidence 99999999999999999999999999988887 344 3689999999999999999999999999999999999
Q ss_pred C-CCcEEEEeCCCCCCCCCCCCCCCC--CCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHH
Q 009060 182 E-SKPVYISISCNLPGIPHPTFARDP--VPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIEL 258 (545)
Q Consensus 182 ~-~GPV~l~iP~dv~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~l 258 (545)
+ |||+|+++|.|+.......+.... .+....+.++.+.+++..|.+++++|++||||++++|.|+.++.+.++|++|
T Consensus 161 G~PG~~yvD~P~d~v~~~~~~e~~~~~~~p~~~~p~P~i~~p~~s~i~~av~llk~AKrPLlvvGkgAa~~~ae~~l~~~ 240 (571)
T KOG1185|consen 161 GRPGPVYVDLPADVVLPSKMVEKEIDVSEPQPPIPLPPIPGPPPSQIQKAVQLLKSAKRPLLVVGKGAAYAPAEDQLRKF 240 (571)
T ss_pred CCCCceEEecccceeeeecccccccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecccccCccHHHHHHH
Confidence 6 999999999995442111111000 1111111121224567889999999999999999999999998899999999
Q ss_pred HHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCccccccc-CCCCCcEEEEcCCc
Q 009060 259 ADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSL-LIKKEKAIIVQPHR 337 (545)
Q Consensus 259 ae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~-~~~~~~~i~id~d~ 337 (545)
.|.+|+|++.|+||||++|++||++++. ....+|++||+||++|++++|+..++..+ +.++.|+||||.++
T Consensus 241 Ve~~glPflptpMgKGll~d~hPl~v~~--------aRS~ALk~ADvvll~GarlnwiLhfG~~Pk~~kd~KfIqvd~n~ 312 (571)
T KOG1185|consen 241 VETTGLPFLPTPMGKGLLPDNHPLNVSS--------ARSLALKKADVVLLAGARLNWILHFGLPPKWSKDVKFIQVDINP 312 (571)
T ss_pred HHhcCCCcccCcccccCCCCCCchhhhH--------HHHHHHhhCCEEEEecceeeEEEecCCCCccCCCceEEEEeCCH
Confidence 9999999999999999999999999864 56778999999999999999999987654 55789999999999
Q ss_pred ceecCCC-cccc----ccHHHHHHHHHHHhccCchhh---hhhh-hhcC---CC---CCCCcCCCCCCcCHHHHHHHHHh
Q 009060 338 VTVGNGP-SLGW----VFMADFLSALAKKLRKNTTAL---ENYR-RIYV---PP---GIPVKRAQNEPLRVNVLFKHIQD 402 (545)
Q Consensus 338 ~~~~~~~-~~~~----~d~~~~l~~L~~~l~~~~~~~---~~~~-~~~~---~~---~~~~~~~~~~~~~~~~~~~~l~~ 402 (545)
++++ .+ ..++ .|+..++.+|.+.+...+..| .+|. +++. .+ ..........++++..+++.+++
T Consensus 313 Eel~-~n~~k~~v~i~gDig~~~~~L~e~l~~~~~~~~~s~~w~k~Lrek~~~ne~~~~~~~~~~~~pLN~~~~~~~vre 391 (571)
T KOG1185|consen 313 EELG-NNFVKPDVAIQGDIGLFVLQLVEELQDQPWTWGPSTDWVKELREKDKQNEAAVEEKAAKKSTPLNYYQVLQTVRE 391 (571)
T ss_pred HHHh-cccCCCCceeeecHHHHHHHHHHHhcCCCcccCCchhHHHHHHHHHHhhHHHHHHHhhccCCCCcHHHHHHHHHH
Confidence 9997 33 2223 389999999999998754311 1232 1111 10 01112234567999999999999
Q ss_pred hCC-CCCEEEecCCcccccccc-ccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHH
Q 009060 403 MLS-GDTAVIAETGDSWFNCQK-LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMI 480 (545)
Q Consensus 403 ~l~-~~~ivv~d~G~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~ 480 (545)
.|| +|+|+|+|.++.+-...+ +....+++.+..+.+|+||.|+++||++|+++|+++|+|+.||++|.|+.+|++|++
T Consensus 392 ~L~~~d~ilVsEGantmdigr~~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaME~ET~v 471 (571)
T KOG1185|consen 392 LLPNDDTILVSEGANTMDIGRTLLPPRGPRRRLDAGTFGTMGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAMELETFV 471 (571)
T ss_pred hcCCCCcEEEecCCcchhhhhhhccCCCcccccCCccccccccchhHHHHHHhhCCCCeEEEEecCcccCcchhhHHHHH
Confidence 999 899999998887643333 344445669999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeEEEEEeC-Cchhh----hhhhcCC------C-CCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 481 RCGQRSIIFLINN-GGYTI----EVEIHDG------P-YNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 481 ~~~lpi~ivV~NN-~~~g~----~~~~~~~------~-~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
||+||+++||+|| +-||. ...+.++ + -..+.+.+|.+++++||.+ ++.|+|.+|+
T Consensus 472 R~~Lpvv~vV~NN~Giyg~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~k-----G~~v~t~~el 538 (571)
T KOG1185|consen 472 RYKLPVVIVVGNNNGIYGLDDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGK-----GYFVSTVEEL 538 (571)
T ss_pred HhcCCeEEEEecCCcccccCcccHHHHhhcCcccCCCcccccccccHHHHHHHcCCC-----ceeeCCHHHH
Confidence 9999999999955 55666 1122122 1 1345899999999999996 6788888776
No 53
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=3.9e-84 Score=645.50 Aligned_cols=518 Identities=61% Similarity=0.972 Sum_probs=473.5
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcchHHH
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV 104 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~ 104 (545)
..++++++|+++|.+.||++|||+||+.++.|+|-|+..+++|++.+.||..|+|+||||||..|.++|++|.|.|.+.+
T Consensus 2 ~~i~~G~YLf~RL~q~gvksvfgVPGDFNL~LLD~l~~~~~lrwvGn~NELNaAYAADGYAR~~Gi~a~VtTfgVGeLSA 81 (561)
T KOG1184|consen 2 SPITLGEYLFRRLVQAGVKTVFGVPGDFNLSLLDKLYAVPGLRWVGNCNELNAAYAADGYARSKGIGACVTTFGVGELSA 81 (561)
T ss_pred CceeHHHHHHHHHHHcCCceeEECCCcccHHHHHHhhhcCCceeecccchhhhhhhhcchhhhcCceEEEEEeccchhhh
Confidence 45789999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCC
Q 009060 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (545)
Q Consensus 105 ~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~G 184 (545)
++|++.||.+++|||+|+|-+++...++++++||++|.+|+..+++|++.+++++..+.+.+++++.|++|+++|....+
T Consensus 82 lNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~~~r 161 (561)
T KOG1184|consen 82 LNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALKESK 161 (561)
T ss_pred hcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCC
Q 009060 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (545)
Q Consensus 185 PV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~ 264 (545)
||||.||.|+...+.+.....+.|....+.+++.....+.++.+.+++.++++|+|++|.-.++.++.++..+|+.+++.
T Consensus 162 PVYi~iP~n~~~~~~~~~~l~~~p~~~~~~~s~~e~~~~~v~~i~e~i~~~~~Pvil~~~~~~r~~~~~~~~~l~~~~~~ 241 (561)
T KOG1184|consen 162 PVYIGVPANLADLPVPAFGLLPVPLDLSPKPSNKEGLEEAVDAILELINKAKKPVILGDPKLRRAKAESAFVELADATGF 241 (561)
T ss_pred CeEEEeecccccCcCCcccCCCCCcccCCCCCcHHHHHHHHHHHHHHhhhccCCeeeccccccHHHHHHHHHHHHHhhCC
Confidence 99999999997754444333344555555555555666788999999999999999999999999999999999999999
Q ss_pred ceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecCCC
Q 009060 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (545)
Q Consensus 265 Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~ 344 (545)
|++.|+++||.+||+||.|.|+|+|..+.+...+.++.+|+||.+|..++++.+.+|+...++.++++++.|...+. ..
T Consensus 242 p~~vtp~gKg~i~E~hp~y~Gvy~G~vs~~~~~e~vesaDlil~~G~~~sd~ss~~~~~~~k~~~~i~~~~d~v~i~-~~ 320 (561)
T KOG1184|consen 242 PVFVTPMGKGFIPESHPHYGGVYWGAVSTPFVKEIVESADLIIFAGPLFNDYSSGGFSYLYKKKNAIEFHSDRVKIR-NA 320 (561)
T ss_pred CeeEeecccccccCcCCceeeEEecccccHhHHHHHhhcCeEEEecccccccccceeEeecCccceEEEecceEEec-cc
Confidence 99999999999999999999999999999999999999999999999999999999988778889999999999886 57
Q ss_pred ccccccHHHHHHHHHHHhccCchhhhhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccccccc
Q 009060 345 SLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKL 424 (545)
Q Consensus 345 ~~~~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~ 424 (545)
.+..++++.+|+.|+.+++.....++...+.+..+..+....+..+++...++++++..+.+++++++|.|.++|....+
T Consensus 321 ~f~~v~mk~~l~~Lak~I~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~d~v~~ETG~S~F~~~~~ 400 (561)
T KOG1184|consen 321 TFGGVLMKDFLQELAKRIKKNKTSYENYVRIPVPEPKPLACPPNAPLRQEWMWNHIQKFLSSGDVVIAETGDSWFGINQT 400 (561)
T ss_pred cccceeHHHHHHHHHHhhcccccchhcccccCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCCceEEEecccceecceee
Confidence 78889999999999999987665554444443333333334455679999999999999999999999999999998889
Q ss_pred cccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcC
Q 009060 425 RLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHD 504 (545)
Q Consensus 425 ~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~~ 504 (545)
.+|.+..+.+...||++||++|+++|+++|.|+|+||.++|||||+++.||+.|+.|.++|..++|+||+||-++++.|+
T Consensus 401 ~fP~g~~~~~q~~wgsIG~svga~lG~a~a~~e~rvilfiGDGs~qlTvQeiStmir~gl~~~if~~NN~GYTIE~~IH~ 480 (561)
T KOG1184|consen 401 KFPKGCGYESQMQWGSIGWSVGATLGYAQAAPEKRVILFIGDGSFQLTVQEISTMIRWGLKPIIFLINNGGYTIEVEIHD 480 (561)
T ss_pred ccccccceEEEEEEeeccccchhhhhhhhccCCceEEEEecCccceeeHHHHHHHHhcCCCcEEEEEeCCceEEEEeecC
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred CCCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceeeEEe
Q 009060 505 GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMCVYV 543 (545)
Q Consensus 505 ~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~~~~ 543 (545)
++|+++.+|||..+-++||+..+++...+|.+.+|++.+
T Consensus 481 ~~Yn~I~~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~ 519 (561)
T KOG1184|consen 481 GPYNDIQNWDYTALLEAFGAGEGKYETHKVRTEEELVEA 519 (561)
T ss_pred CCccccccchHHHHHHhhcCccceeEEeeeccchHHHHH
Confidence 789999999999999999999888999999998887543
No 54
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=1.3e-85 Score=637.90 Aligned_cols=499 Identities=19% Similarity=0.234 Sum_probs=419.6
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchH
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGL 102 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~ 102 (545)
...+||+|++++.+.++||++|||+||+.++|++|++.+++.+++|+.||||+|++||.||+|.|| ||||++|||||++
T Consensus 88 fvg~tGg~If~emm~rqnV~tVFgYPGGAilpv~dAi~rS~~f~fvLPrHEQgaghaAegYaR~sgKPGvvlvTSGPGAT 167 (675)
T KOG4166|consen 88 FVGRTGGDIFVEMMERQNVETVFGYPGGAILPVHDAITRSSSFRFVLPRHEQGAGHAAEGYARSSGKPGVVLVTSGPGAT 167 (675)
T ss_pred ccCCchhHHHHHHHHhcCCceEeecCCcceeehHhhhhcCccccccccccccccchhhhhhhhhcCCCcEEEEecCCCcc
Confidence 457999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC
Q 009060 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (545)
Q Consensus 103 n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (545)
|.+++|++|+.|++||+++|||.++...|.+ .+|+. |.+++.|++|||.+.+.+.+++|.-|++||++|.++
T Consensus 168 Nvvtp~ADAlaDg~PlVvftGQVptsaIGtD-----AFQEa---diVgisRScTKwNvmVkdVedlPrrI~EAFeiATSG 239 (675)
T KOG4166|consen 168 NVVTPLADALADGVPLVVFTGQVPTSAIGTD-----AFQEA---DIVGISRSCTKWNVMVKDVEDLPRRIEEAFEIATSG 239 (675)
T ss_pred cccchhhHHhhcCCcEEEEecccchhhcccc-----hhccC---CeeeeeeccceeheeeecHHHhhHHHHHHhhhhccC
Confidence 9999999999999999999999999988876 35433 568899999999999999999999999999999995
Q ss_pred -CCcEEEEeCCCCCCCC--CCCCCCCCCCc--c--cCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccc-cchHHH
Q 009060 183 -SKPVYISISCNLPGIP--HPTFARDPVPF--F--LAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRV-AKAQKA 254 (545)
Q Consensus 183 -~GPV~l~iP~dv~~~~--~~~~~~~~~~~--~--~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~-~~a~~~ 254 (545)
||||.+++|.|++.+. .+.......|. . ..+++. ....-..|++++++|+.||+|+|.+|+|+.. ++...+
T Consensus 240 RPGPVLVDlPKDvta~~l~~pip~~~~lPsn~~m~~~~~~~-~~~v~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d~p~l 318 (675)
T KOG4166|consen 240 RPGPVLVDLPKDVTAQLLIPPIPQAMRLPSNAYMSRMPKPP-EDFVMSHIEQIARLISLAKKPVLYVGGGCLNSSDGPRL 318 (675)
T ss_pred CCCCeEeeCcHHHHHHHhcCCchhhhcCCchhhHhhCCCCc-hhhHHHHHHHHHHHHHhccCceEEeCcccccCCcchHH
Confidence 8999999999997631 11111111111 0 111111 0112257999999999999999999999975 456779
Q ss_pred HHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCc-----
Q 009060 255 FIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEK----- 329 (545)
Q Consensus 255 l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~----- 329 (545)
|.+|.|+++|||.||++|-|.+|++.++.+-++ |..|..++|.+++++|+||++|.||+++.+++.+.|.+.++
T Consensus 319 L~~fser~qIPVtttL~GLGs~d~~d~lSLhML-GMHG~~yAN~Avq~aDLilA~GvRFDDRVTGn~s~FAp~Ar~aaae 397 (675)
T KOG4166|consen 319 LGRFSERTQIPVTTTLMGLGSYDCDDELSLHML-GMHGTVYANYAVQHADLILAFGVRFDDRVTGNLSAFAPRARRAAAE 397 (675)
T ss_pred HHHHHHhhcCcceehhhcccCcCCCCchhhhhh-cccccceehhhhhccceeEEecceeccccccchhhhChhhhhhhhc
Confidence 999999999999999999999999999999986 88899999999999999999999999999998888877776
Q ss_pred ----EEEEcCCcceecCCCccc----cccHHHHHHHHHHHhccCch-hhhhh-------hhhcCCCCCCCcCCCCCCcCH
Q 009060 330 ----AIIVQPHRVTVGNGPSLG----WVFMADFLSALAKKLRKNTT-ALENY-------RRIYVPPGIPVKRAQNEPLRV 393 (545)
Q Consensus 330 ----~i~id~d~~~~~~~~~~~----~~d~~~~l~~L~~~l~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 393 (545)
+||+|+++..+| +...+ +.|+...|+.+...++..+. .+.+| ++..... -.+..+...+.|
T Consensus 398 ~rggIiHfdispknIg-Kvvqp~~aveGDv~~~L~~m~s~~kn~~~~~r~dW~~qin~wK~~fP~s--f~~~tpGe~ikP 474 (675)
T KOG4166|consen 398 GRGGIIHFDISPKNIG-KVVQPHVAVEGDVKLALQGMNSVLKNRAEELRLDWRNQINVWKQKFPLS--FKEETPGEAIKP 474 (675)
T ss_pred ccCceEEEecCHHHhC-cccCcceeeeccHHHHHHHHHhHhhcccchhhhhHHHHHHHHHHhCCee--eeccCCccccCh
Confidence 999999999998 44333 34888889888876654332 11223 2222110 012345667999
Q ss_pred HHHHHHHHhhCCC---CCEEEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhh
Q 009060 394 NVLFKHIQDMLSG---DTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF 469 (545)
Q Consensus 394 ~~~~~~l~~~l~~---~~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf 469 (545)
+++++.|++...+ ..|+.++.|.+.+|+ +++...++++|+++++.|.||+|+|+||||++|+|+.-||-|.||+||
T Consensus 475 Q~vIk~Ldk~t~d~~~kviitTGVGqHQMWAAqfy~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA~P~~iViDIDGDaSF 554 (675)
T KOG4166|consen 475 QYVIKVLDKLTDDTGRKVIITTGVGQHQMWAAQFYNWKKPRQWLTSGGLGTMGFGLPAAIGASVANPDAIVIDIDGDASF 554 (675)
T ss_pred HHHHHHHHHhccCcCceEEEeccccHHHHHHHHHhcccCccceeecCCccccccCcchhhcccccCcccEEEeccCCcee
Confidence 9999999998775 678888999999885 566777788899999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCCeEEEEEeCCchhh----hhhhcCCCCC--CCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 470 QVTAQEISTMIRCGQRSIIFLINNGGYTI----EVEIHDGPYN--VIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 470 ~~~~~eL~ta~~~~lpi~ivV~NN~~~g~----~~~~~~~~~~--~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
.|+.+||.|+++.++|+.|+++||...|| |..+++..|. .-.++||.++|+|||++ +.||+..++|
T Consensus 555 ~Mt~~ELat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~rysHThQ~nPnf~klA~AmGik-----alRV~K~edL 626 (675)
T KOG4166|consen 555 IMTVQELATIRQENLPVKILILNNEEQGMVTQWQDLFYEARYSHTHQENPNFLKLAAAMGIK-----ALRVTKKEDL 626 (675)
T ss_pred eeehHhhhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhhhccccccCccHHHHHHhcCCc-----hheeehHHHH
Confidence 99999999999999999999999999999 3445555553 34679999999999997 5677766655
No 55
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=100.00 E-value=2.2e-83 Score=700.83 Aligned_cols=491 Identities=16% Similarity=0.143 Sum_probs=379.0
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHH
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (545)
++++++|++.|+++||++|||+||+++++|++++.++++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|++
T Consensus 9 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~l 88 (568)
T PRK07449 9 TLWAAVILEELTRLGVRHVVIAPGSRSTPLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTSGTAVANLY 88 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECCccHHHhhh
Confidence 889999999999999999999999999999999976668999999999999999999999999 9999999999999999
Q ss_pred HHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCCh--hhHHHHHHHHHHH---hh
Q 009060 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNL--GDAHELIDTAIST---AL 180 (545)
Q Consensus 106 ~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~--~~~~~~l~~A~~~---a~ 180 (545)
+||++||.+++|||+|+|+++...++++. + |..||.++++++|++..+..+. +..+..++++++. |.
T Consensus 89 ~~i~~A~~~~~Pvl~IsG~~~~~~~~~~~-----~---q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~ 160 (568)
T PRK07449 89 PAVIEAGLTGVPLIVLTADRPPELRDCGA-----N---QAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQ 160 (568)
T ss_pred HHHHHHhhcCCcEEEEECCCCHHHhcCCC-----C---ceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999987666552 2 2468999999999877766544 3344444544444 65
Q ss_pred h-CCCcEEEEeCCCCCCCCCC-CCCCCC--CCccc-CC--CCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHH
Q 009060 181 K-ESKPVYISISCNLPGIPHP-TFARDP--VPFFL-AP--KVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQK 253 (545)
Q Consensus 181 ~-~~GPV~l~iP~dv~~~~~~-~~~~~~--~~~~~-~~--~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~ 253 (545)
+ ++|||||+||.|++..+.. .....+ .+... .+ ......+++..+++++++|++ |||+|++|.|++++ .+
T Consensus 161 ~~~~GPV~i~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-krPvii~G~g~~~~--~~ 237 (568)
T PRK07449 161 TLQAGPVHINCPFREPLYPDDDDDTGSPWLAPLGDWWQDDWLRQTVQPEVTSQRDWDIWRQ-KRGVVIAGRLSAEE--GQ 237 (568)
T ss_pred CCCCCCEEEeCCCCCCCCCCCcccccccccccccccccccccccccCccccchhhhhhhcc-CCeEEEECCCChHH--HH
Confidence 5 4799999999998643211 000000 01100 00 000012234578899999998 99999999999863 49
Q ss_pred HHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEE
Q 009060 254 AFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIV 333 (545)
Q Consensus 254 ~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~i 333 (545)
+|.+|+|++|+||++|+++|+.+|++||+++|++.+..+++.+++.+++||+||++|+++++..+..|... ...++|||
T Consensus 238 ~l~~lae~~g~PV~tt~~~~~~~~~~hp~~~G~~g~~~~~~~~~~~l~~aD~vl~vG~~l~~~~~~~~~~~-~~~~~i~i 316 (568)
T PRK07449 238 AIAALAQLLGWPLLADPLSPRNYAPLHPQPIPCYDLWLRNPKAAEELLQPDIVIQFGSPPTSKRLLQWLAD-CEPEYWVV 316 (568)
T ss_pred HHHHHHHHCCCeEEEecCCCCCCCCCCccccchHHHHhcCchhhhhcCCCCEEEEeCCCCCchhHHHHHhc-CCCCEEEE
Confidence 99999999999999999999999999999999875444666778889999999999999976655445322 23489999
Q ss_pred cCCcceecCCCccc----cccHHHHHHHHHHHhccCchhh-hhhhhhcC--CCCCCCcCCCCCCcCHHHHHHHHHhhCCC
Q 009060 334 QPHRVTVGNGPSLG----WVFMADFLSALAKKLRKNTTAL-ENYRRIYV--PPGIPVKRAQNEPLRVNVLFKHIQDMLSG 406 (545)
Q Consensus 334 d~d~~~~~~~~~~~----~~d~~~~l~~L~~~l~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 406 (545)
|.|+..++ ..... ..|++.+|++ ..... ...| ..+...+. .+.. .....+.++++.++++.|++.+|+
T Consensus 317 d~d~~~~~-~~~~~~~~i~~d~~~~l~~-~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~~~l~~ 391 (568)
T PRK07449 317 DPGPGRLD-PAHHATRRLTASVATWLEA-HPAEK--RKPWLQEWQALNEKAREAV-REQLAEDTFTEAKVAAALADLLPE 391 (568)
T ss_pred CCCCCcCC-CCCCceEEEEEcHHHHHHh-ccccc--chHHHHHHHHHHHHHHHHH-HHHhccCCccHHHHHHHHHHhCCC
Confidence 99999886 22222 2488999988 32211 1112 11111100 0000 000123569999999999999999
Q ss_pred CCEEEecCCccccccc-cccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCC
Q 009060 407 DTAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQR 485 (545)
Q Consensus 407 ~~ivv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lp 485 (545)
+++++.|.|++.+|.. ++..+.+.+++.+.++++|||++|+|||++++ |+|+||+|+|||||+|+++||+|++||++|
T Consensus 392 ~~iv~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~lpaaiGaala-~~~~vv~i~GDGsf~~~~~eL~Ta~r~~l~ 470 (568)
T PRK07449 392 GGQLFVGNSLPVRDVDAFGQLPDGYPVYSNRGASGIDGLLSTAAGVARA-SAKPTVALIGDLSFLHDLNGLLLLKQVPAP 470 (568)
T ss_pred CCeEEEECcHHHHHHHHccCcCCCceEEecCCccchhhHHHHHHHHHhc-CCCCEEEEechHHhhcCcHHHHhhcccCCC
Confidence 9999999998876653 44555556688888899999999999999999 899999999999999999999999999999
Q ss_pred eEEEEEeCCchhhhhhhc---C----C-CCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 486 SIIFLINNGGYTIEVEIH---D----G-PYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 486 i~ivV~NN~~~g~~~~~~---~----~-~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+++||+||++|++.+... + + .+...+++||+++|++||++ +++|++++||
T Consensus 471 i~ivVlNN~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~-----~~~V~~~~eL 528 (568)
T PRK07449 471 LTIVVVNNNGGGIFSLLPQPEEEPVFERFFGTPHGVDFAHAAAMYGLE-----YHRPETWAEL 528 (568)
T ss_pred eEEEEEECCCCccccCCCCCCCcchhhHhhcCCCCCCHHHHHHHcCCC-----ccCCCCHHHH
Confidence 999999999999722111 1 1 22334679999999999997 4688888776
No 56
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=100.00 E-value=8.8e-75 Score=688.23 Aligned_cols=497 Identities=15% Similarity=0.131 Sum_probs=376.9
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHH
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (545)
..++++|++.|+++||+||||+||+++++|++++.++++|++|.+|||++|+|||+||+|+|| ||||++|+|||++|++
T Consensus 301 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~pL~dAl~~~~~i~~i~~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l 380 (1655)
T PLN02980 301 AVWASLIIEECTRLGLTYFCVAPGSRSSPLAIAASNHPLTTCIACFDERSLAFHALGYARGSLKPAVVITSSGTAVSNLL 380 (1655)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHhCCCCeEEeccCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHH
Confidence 669999999999999999999999999999999976668999999999999999999999999 9999999999999999
Q ss_pred HHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhH------HHHHHHHHHHh
Q 009060 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDA------HELIDTAISTA 179 (545)
Q Consensus 106 ~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~------~~~l~~A~~~a 179 (545)
+||++|+.+++|||+||||++....+++. . |.+||..+|+++|||+.++.+++++ ++.+++|++.|
T Consensus 381 ~av~eA~~d~vPlLvItgd~p~~~~~~ga-----~---Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A 452 (1655)
T PLN02980 381 PAVVEASQDFVPLLLLTADRPPELQDAGA-----N---QAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWA 452 (1655)
T ss_pred HHHHHHhhcCCCEEEEeCCCCHHHhcCCC-----C---cccchhhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999998777652 3 3468999999999999999999983 58999999999
Q ss_pred hhC-CCcEEEEeCCCCCCCCCCCCC------------CCCCCc-ccC--CCCCCchhhHHHHHHHHHHHHhcCCCEEEcC
Q 009060 180 LKE-SKPVYISISCNLPGIPHPTFA------------RDPVPF-FLA--PKVSNQLGLEAAVEATADFLNKAVKPVLVGG 243 (545)
Q Consensus 180 ~~~-~GPV~l~iP~dv~~~~~~~~~------------~~~~~~-~~~--~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G 243 (545)
+++ ||||||+||+|.+........ ....+. ... +..+...+++..+++++++|.+||||+|++|
T Consensus 453 ~s~rpGPVhL~iP~~~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkRPvIvaG 532 (1655)
T PLN02980 453 TSSPCGPVHINCPFREPLDGSPTNWMSSCLKGLDMWMSNAEPFTKYIQMQSSKADGDTTGQITEVLEVIQEAKRGLLLIG 532 (1655)
T ss_pred hCCCCCCEEEECccCCccccccccccccccccchhcccCCCccccccccccccccccchhhHHHHHHHHHhCCCcEEEEc
Confidence 996 799999999764321110000 000000 000 0001011245679999999999999999999
Q ss_pred ccccccchHHHHHHHHHHhCCceEeCCCC-c------cCCCC--CCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCC
Q 009060 244 PNIRVAKAQKAFIELADATGYPIAIMPSG-K------GLVPE--HHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFN 314 (545)
Q Consensus 244 ~g~~~~~a~~~l~~lae~~~~Pv~tt~~~-k------g~~~~--~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~ 314 (545)
+|+..+++. ++.+|||++++||++|+++ | |.||+ +||+++|.+ |..........++++|+||.||++++
T Consensus 533 ~G~~~~~a~-~~~~LAe~l~~PV~tt~~sg~~~~~~~g~ipe~~~~pl~~g~~-g~~~~~~~~~~~~~aDlVl~iG~rl~ 610 (1655)
T PLN02980 533 AIHTEDDIW-AALLLAKHLMWPVVADILSGLRLRKLFKSFPEFELNILFVDHL-DHALLSDSVRNWIQFDVVIQIGSRIT 610 (1655)
T ss_pred CCCchHHHH-HHHHHHHhCCCeEEEeCCCCCCCCccccccccccccccccchH-HHHhCchhhhccCCCCEEEEeCCccc
Confidence 998765555 5689999999999999975 4 99999 899999986 43111224556789999999999987
Q ss_pred CC-cccccccCCCCCcEEEEcCCcceecCCCcc---ccccHHHHHHHHHHHhccC-chhh-hhhhhhcCC--CCCCCcCC
Q 009060 315 DY-SSVGYSLLIKKEKAIIVQPHRVTVGNGPSL---GWVFMADFLSALAKKLRKN-TTAL-ENYRRIYVP--PGIPVKRA 386 (545)
Q Consensus 315 ~~-~~~~~~~~~~~~~~i~id~d~~~~~~~~~~---~~~d~~~~l~~L~~~l~~~-~~~~-~~~~~~~~~--~~~~~~~~ 386 (545)
+. .+..+....+ .++||||.|+.++++.... ...|++.++++|.+..... ...| ..+.+.+.. ........
T Consensus 611 s~~~t~~~~~~~~-~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 689 (1655)
T PLN02980 611 SKRVSQMLEKCFP-FSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLKAQFPRRRSKWHGHLQALDGMVAQEISFQIH 689 (1655)
T ss_pred cHHHHHHHHhCCC-CeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 43 3323322233 3599999999988622211 1248999999987643221 1122 122111000 00000001
Q ss_pred CCCCcCHHHHHHHHHhhCCCCCEEEecCCccc----ccc-ccc-----------cccCCCeeEe-ccCccccch--hHHH
Q 009060 387 QNEPLRVNVLFKHIQDMLSGDTAVIAETGDSW----FNC-QKL-----------RLPENCGYEF-QMQYGSIGW--SVGA 447 (545)
Q Consensus 387 ~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~----~~~-~~~-----------~~~~~~~~~~-~~~~g~mG~--~l~a 447 (545)
...++++.++++.|++.+|+|++++.|+|++. .|. .++ ....+.+++. +.++|+||+ ++|+
T Consensus 690 ~~~~l~~~~v~~~L~~~Lp~d~ivv~d~g~~ird~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~G~mG~~G~lpa 769 (1655)
T PLN02980 690 AESSLTEPYVAHVISEALTSDSALFIGNSMAIRDADMYGCSSENYSSRIVDMMLSAELPCQWIQVAGNRGASGIDGLLST 769 (1655)
T ss_pred cCCCcchHHHHHHHHHhCCCCCeEEEECcHHHHHHHHcCCccccccccccccccccccccccceEEecCCccchhhhHHH
Confidence 12358899999999999999999999998653 332 222 1234445664 789999999 5999
Q ss_pred HHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHh--CCCeEEEEEeCCchhhhhhh----------cCCCCCCCCCCCH
Q 009060 448 TLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRC--GQRSIIFLINNGGYTIEVEI----------HDGPYNVIKNWDY 515 (545)
Q Consensus 448 AiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~--~lpi~ivV~NN~~~g~~~~~----------~~~~~~~l~~~d~ 515 (545)
|||++++. +|+|++|+|||||+|++|||+|++|+ ++|++|||+||++|++.+.. ++..+...+++||
T Consensus 770 AIGaala~-~r~Vv~i~GDGsF~m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~~~~~~~~~~~~~~~~~~df 848 (1655)
T PLN02980 770 AIGFAVGC-NKRVLCVVGDISFLHDTNGLSILSQRIARKPMTILVINNHGGAIFSLLPIAKRTEPRVLNQYFYTSHDISI 848 (1655)
T ss_pred HHHHhhcC-CCCEEEEEehHHHHhhhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccCCCCcchhHHHHhcCCCCCCH
Confidence 99999997 99999999999999999999999995 99999999999999983221 0111223367999
Q ss_pred HHHHHHcCCCCCceeEEEEeeceee
Q 009060 516 TGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 516 ~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
.++|++||++ +.+|++++||
T Consensus 849 ~~lA~a~G~~-----~~rV~~~~eL 868 (1655)
T PLN02980 849 ENLCLAHGVR-----HLHVGTKSEL 868 (1655)
T ss_pred HHHHHHcCCc-----eeecCCHHHH
Confidence 9999999997 6788888876
No 57
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=100.00 E-value=1e-70 Score=580.10 Aligned_cols=411 Identities=19% Similarity=0.163 Sum_probs=330.0
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHHHH
Q 009060 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNA 107 (545)
Q Consensus 29 ~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~ 107 (545)
.+++|++.|+++||+||||+||+++++|++++.+.++|++|.+|||++|+|||+||+|+|| +|||++|+|||.+|+++|
T Consensus 2 ~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~g 81 (432)
T TIGR00173 2 WASVLVEELVRLGVRHVVISPGSRSTPLALAAAEHPRLRVHVHIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPA 81 (432)
T ss_pred hHHHHHHHHHHcCCCEEEECCCcccHHHHHHHHhCCCcEEEEecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHH
Confidence 4799999999999999999999999999999966568999999999999999999999999 999999999999999999
Q ss_pred HHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhh------HHHHHHHHHHHhhh
Q 009060 108 IAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGD------AHELIDTAISTALK 181 (545)
Q Consensus 108 l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~------~~~~l~~A~~~a~~ 181 (545)
|++||.+++|||+|+|++++...+++. + |..||.++|+++|||+.+++++++ +++.+++|++.|.+
T Consensus 82 l~~A~~~~~Pvl~i~g~~~~~~~~~~~-----~---q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~ 153 (432)
T TIGR00173 82 VIEASYSGVPLIVLTADRPPELRGCGA-----N---QTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQG 153 (432)
T ss_pred HHHhcccCCcEEEEeCCCCHHHhCCCC-----C---cccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhC
Confidence 999999999999999999988766552 2 236889999999999999999998 89999999999999
Q ss_pred C-CCcEEEEeCCCCCCCCCCCCCCCCC-C--cccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHH
Q 009060 182 E-SKPVYISISCNLPGIPHPTFARDPV-P--FFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIE 257 (545)
Q Consensus 182 ~-~GPV~l~iP~dv~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~ 257 (545)
+ ||||||+||.|++..+.+....... . ...........+++..+++++++|.+||||+|++|.|+.++ +.++|.+
T Consensus 154 ~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~~~-a~~~l~~ 232 (432)
T TIGR00173 154 PPPGPVHINVPFREPLYPDPLLQPLQPWLRSGVPTVTTGPPVLDPESLDELWDRLNQAKRGVIVAGPLPPAE-DAEALAA 232 (432)
T ss_pred CCCCCEEEeCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHHHHHHHhhcCCcEEEEcCCCcHH-HHHHHHH
Confidence 5 7999999999996532211000000 0 00000001112346678999999999999999999999876 8999999
Q ss_pred HHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCc
Q 009060 258 LADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHR 337 (545)
Q Consensus 258 lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~ 337 (545)
|+|++++||++|++|||.+ ++| +++|.+.+..+++.+++++ ++|+||++|++++++.+..|. +.++.++||||.|+
T Consensus 233 lae~~~~PV~tt~~~~~~~-~~~-~~~G~~~~~~~~~~~~~~~-~aDlvl~lG~~~~~~~~~~~~-~~~~~~~i~vd~d~ 308 (432)
T TIGR00173 233 LAEALGWPLLADPLSGLRG-GPH-LVIDHYDLLLANPELREEL-QPDLVIRFGGPPVSKRLRQWL-ARQPAEYWVVDPDP 308 (432)
T ss_pred HHHhCCCeEEEeCCCCCCC-CCC-CCcCHHHHHhcCCchhhhC-CCCEEEEeCCCcchhHHHHHH-hCCCCcEEEECCCC
Confidence 9999999999999999999 789 9999875566777778888 999999999999887666662 23456899999999
Q ss_pred ceecCCCccc----cccHHHHHHHHHHHhccCchh-hhhhhhhcCCCCC-CCcCCCCCCcCHHHHHHHHHhhCCCCCEEE
Q 009060 338 VTVGNGPSLG----WVFMADFLSALAKKLRKNTTA-LENYRRIYVPPGI-PVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (545)
Q Consensus 338 ~~~~~~~~~~----~~d~~~~l~~L~~~l~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv 411 (545)
..++ +.+.. ..|++.+|++|.+.++..... ...|.+....... .....++.++++.++++.|++.+|+|.+++
T Consensus 309 ~~~~-~~~~~~~~i~~D~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~lp~d~ivv 387 (432)
T TIGR00173 309 GWLD-PSHHATTRLEASPAEFAEALAGLLKNPDAAWLDRWLEAEAKAREALREVLAEEPLSELSLARALSQLLPEGAALF 387 (432)
T ss_pred CccC-CCCCceEEEEECHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhCCCCCeEE
Confidence 9886 32222 248999999998887543222 2223211100000 000112346999999999999999999999
Q ss_pred ecCCcccccccccc-cc-CCCeeEeccCccccchhHHHHHHhhh
Q 009060 412 AETGDSWFNCQKLR-LP-ENCGYEFQMQYGSIGWSVGATLGYAQ 453 (545)
Q Consensus 412 ~d~G~~~~~~~~~~-~~-~~~~~~~~~~~g~mG~~l~aAiGaal 453 (545)
.|+|++.+|...+. .. .+++++++.++|+||+++|+|||+++
T Consensus 388 ~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~glp~aiGa~~ 431 (432)
T TIGR00173 388 VGNSMPIRDLDTFAQPPDKPIRVFANRGASGIDGTLSTALGIAL 431 (432)
T ss_pred EECCHHHHHHHhcCCcCCCCceEEecCchhhHHHHHHHHHHhhc
Confidence 99999998765443 33 46789999999999999999999986
No 58
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=100.00 E-value=3e-69 Score=510.57 Aligned_cols=497 Identities=18% Similarity=0.221 Sum_probs=411.1
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhc-C-ceEEEEcCCcch
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSR-G-VGACVVTFTVGG 101 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~t-g-~gv~~~t~GpG~ 101 (545)
|.+|..-|+-+-.|++.||+..||+||..+.|++.+|.+..+|+.|..||-.+|.+||.||.|+. | .|||+.||||..
T Consensus 1 makmravdaav~vlekegi~~afgvpgaainp~ysalr~~g~i~hvlarhvegashmaegytra~~gnigvcigtsgpag 80 (592)
T COG3960 1 MAKMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAG 80 (592)
T ss_pred CcchhhhhHHHHHHHhcCcceecCCCccccCHHHHHHHhcCcHHHHHHHHhcchhhhhcccccccCCceEEEecCCCCCc
Confidence 45688889999999999999999999999999999999888899999999999999999999997 5 999999999999
Q ss_pred HHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhh
Q 009060 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK 181 (545)
Q Consensus 102 ~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~ 181 (545)
+.+++|+.+|+.|++|+|+||||.|+....+. -+ |..|...+.+|++||+..+..|..+|.++++||...++
T Consensus 81 tdmitglysa~adsipilcitgqaprarl~ke-----df---qavdi~~ia~pv~kwavtv~epalvp~v~qkafhlmrs 152 (592)
T COG3960 81 TDMITGLYSASADSIPILCITGQAPRARLHKE-----DF---QAVDIEAIAKPVSKWAVTVREPALVPRVLQQAFHLMRS 152 (592)
T ss_pred cchhhhhhhcccccccEEEecCCCchhhhchh-----hh---hhhhHHHhhhhhhhhhhhhcchhhhHHHHHHHHHHHhc
Confidence 99999999999999999999999998755543 22 34577889999999999999999999999999999998
Q ss_pred C-CCcEEEEeCCCCCCCCCCCCCCC-CCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHH
Q 009060 182 E-SKPVYISISCNLPGIPHPTFARD-PVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELA 259 (545)
Q Consensus 182 ~-~GPV~l~iP~dv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~la 259 (545)
+ ||||.|++|+|+|..+ ..+++. -.|... .+ +......-+++..+|.+++||+|++|+|+...++.+.+.+|+
T Consensus 153 ~rpgpvlidlp~dvq~ae-iefd~d~yepl~~-~k---paatr~qaekalaml~~aerplivagggiinadaa~l~~efa 227 (592)
T COG3960 153 GRPGPVLIDLPFDVQVAE-IEFDPDMYEPLPV-YK---PAATRVQAEKALAMLIQAERPLIVAGGGVINADAAALLQEFA 227 (592)
T ss_pred CCCCCeEEecccceEEEE-EecCccccCcCCc-CC---chhHHHHHHHHHHHHhhccCcEEEecCceecccHHHHHHHHH
Confidence 5 9999999999998753 222221 111111 11 122455678899999999999999999999999999999999
Q ss_pred HHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcce
Q 009060 260 DATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVT 339 (545)
Q Consensus 260 e~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ 339 (545)
|..|+||+.|+||-|.+|++||+..|+..-..++++.|..+..+|+|+-+|.++..+-++....+.++.++||||++|.+
T Consensus 228 el~gvpviptlmgwg~ipddhplmagm~glqtshrygnatll~sd~vfgignrwanrhtgsv~vyt~gr~fihvdieptq 307 (592)
T COG3960 228 ELTGVPVIPTLMGWGCIPDDHPLMAGMVGLQTSHRYGNATLLASDMVFGIGNRWANRHTGSVEVYTEGRKFIHVDIEPTQ 307 (592)
T ss_pred HHcCCcccchhccccccCCcchhhcccccceecccccchhhhhhhheeeccchhhhcccCceeeeecCceEEEEeccccc
Confidence 99999999999999999999999999963345677888889999999999999988888777666788899999999999
Q ss_pred ecCCCcc-ccc----cHHHHHHHHHHHhccCc-----hhhhhhh---hhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCC
Q 009060 340 VGNGPSL-GWV----FMADFLSALAKKLRKNT-----TALENYR---RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSG 406 (545)
Q Consensus 340 ~~~~~~~-~~~----d~~~~l~~L~~~l~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 406 (545)
+| +++ ++. |.++.|+.+++.-.+.+ ..|..|. +.+.........-++-|+.|+++++++++.++.
T Consensus 308 ig--rvf~pdlgivsda~aal~~~ldva~ewk~agkl~~~~aw~~~cq~rkrtl~rkthfd~vp~kpqrvyeemn~~fgr 385 (592)
T COG3960 308 IG--RVFCPDLGIVSDAKAALTLLLDVAQEWKKAGKLPCRKAWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGR 385 (592)
T ss_pred cc--eeecCccceeechHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHhhcCC
Confidence 97 433 332 78899999888654322 1234442 222111112233456789999999999999999
Q ss_pred CCEEEecCCcccc-ccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCC
Q 009060 407 DTAVIAETGDSWF-NCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQR 485 (545)
Q Consensus 407 ~~ivv~d~G~~~~-~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lp 485 (545)
|..+++.+|.+.. .++++...+++.|+..+..|.+||.+|+|+|+..|.|+|.+|++.||-.|+|-+.||...+++++|
T Consensus 386 d~~yvstiglsqia~aqflhv~~pr~wincgqagplgwtipaalgv~~adp~r~vvalsgdydfqfmieelavgaq~k~p 465 (592)
T COG3960 386 DVCYVTTIGLSQIAAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDYDFQFLIEELAVGAQFKIP 465 (592)
T ss_pred ceeEEEeccHHHHhhhhhhhhcCCcceeecCccCCcccccchhhceeecCCCCceEEeecCchHHHHHHHHhhhhcccCc
Confidence 9999999999876 456666666666998899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCchhh-hhhh--cCCCC------CC-------CCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 486 SIIFLINNGGYTI-EVEI--HDGPY------NV-------IKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 486 i~ivV~NN~~~g~-~~~~--~~~~~------~~-------l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
.+.||.||.-.|. .+.+ ++..| .+ -..+|-.+++|++||+ ..||..++|+
T Consensus 466 yihv~vnnaylglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgck-----airv~~p~e~ 531 (592)
T COG3960 466 YIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCK-----AIRVFKPEDI 531 (592)
T ss_pred eEEEEecchHHHHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCce-----eEEecChHHh
Confidence 9999999999997 2211 11111 11 1468999999999996 6788777664
No 59
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=8e-65 Score=498.61 Aligned_cols=505 Identities=19% Similarity=0.251 Sum_probs=396.8
Q ss_pred CCccHHHHHHHHHHHcC---------CCEEEecCCCCh-HHHHHhhhcCC-CCeEEecCchhHHHHHHhHHhhhcC---c
Q 009060 25 SVGTLGRHLARRLVEIG---------AKDVFSVPGDFN-LTLLDHLIAEP-ELNLVGCCNELNAGYAADGYARSRG---V 90 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~G---------V~~vFg~pG~~~-~~l~~al~~~~-~i~~i~~~hE~~A~~~A~gyar~tg---~ 90 (545)
..+|.++++++.|.+.= |.-||.+-|..| ..+-++|++.+ .+.++..+|||+-+++|.+|+|... .
T Consensus 5 vRlT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rrr~ 84 (617)
T COG3962 5 VRLTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRRRI 84 (617)
T ss_pred ehhHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhcee
Confidence 35899999999998753 346888888555 56888998754 4899999999999999999999986 4
Q ss_pred eEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCCh-HHHHHHhhhceeEEEEeCChhhHH
Q 009060 91 GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF-TQELRCFQAITCSQAVVNNLGDAH 169 (545)
Q Consensus 91 gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~k~~~~v~~~~~~~ 169 (545)
-+|..+.|||++|++++.+.|..+++|+|+|-||.-.. +..++.+|+.-++.|. +.-.+.|+|++||..++++||++-
T Consensus 85 ~A~tsSiGPGA~NmvTaAalA~~NrlPvLllPgDvfA~-R~PDPVLQQ~E~~~d~~it~NDcfrPVSRYfDRItRPEQl~ 163 (617)
T COG3962 85 YAVTSSIGPGAANMVTAAALAHVNRLPVLLLPGDVFAT-RQPDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQLM 163 (617)
T ss_pred eEEecccCCcHHHHHHHHHHHHhhcCceEeeccchhcc-cCCChHHHhhhccccCceecccccccHHHHhhhcCCHHHHH
Confidence 67888889999999999999999999999999997554 4455555443322221 122478999999999999999999
Q ss_pred HHHHHHHHHhhhC--CCcEEEEeCCCCCCCCCCCCCC--CCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCcc
Q 009060 170 ELIDTAISTALKE--SKPVYISISCNLPGIPHPTFAR--DPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPN 245 (545)
Q Consensus 170 ~~l~~A~~~a~~~--~GPV~l~iP~dv~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g 245 (545)
..+.||++....+ .|||-|.+|.|||.+..+.... .+.-++..+ +++++..++.++++|+++|||+||+|+|
T Consensus 164 sal~rA~~VmTDPA~~GpvTl~l~QDVq~eA~Dyp~~FF~~rv~~~rR----~~Pd~~eL~~A~~lik~ak~PlIvaGGG 239 (617)
T COG3962 164 SALPRAMRVMTDPADCGPVTLALCQDVQAEAYDYPESFFEKRVWRIRR----PPPDERELADAAALIKSAKKPLIVAGGG 239 (617)
T ss_pred HHHHHHHHHhCChhhcCceEEEechhhhhhhcCCcHHhhhhhhhhccC----CCCCHHHHHHHHHHHHhcCCCEEEecCc
Confidence 9999999999885 6999999999998742111000 011111211 1346778999999999999999999999
Q ss_pred ccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCC
Q 009060 246 IRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLI 325 (545)
Q Consensus 246 ~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~ 325 (545)
+.++++.++|+.|+|..|+||++|..|||.++.+||+.+|.. |..|+..+|.+.++||+||-||+|+.++++..|..|.
T Consensus 240 v~YS~A~~~L~af~E~~~iPv~ETQaGKsal~~dhplNlG~v-GvTGt~AAN~~A~~ADlVigiGTR~~DFTTgS~alF~ 318 (617)
T COG3962 240 VLYSGAREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGV-GVTGTLAANRAAEEADLVIGIGTRLQDFTTGSKALFK 318 (617)
T ss_pred eeechHHHHHHHHHHhcCCceEeccCCcccccccCccccccc-cccchHHHHhhhhhcCEEEEecccccccccccHHHhc
Confidence 999999999999999999999999999999999999999985 8999999999999999999999999999999887654
Q ss_pred -CCCcEEEEcCCcceecCCCccc-cccHHHHHHHHHHHhccCch--hhhh-hhhh---cCCCCC-CCcC--CCCCCcCHH
Q 009060 326 -KKEKAIIVQPHRVTVGNGPSLG-WVFMADFLSALAKKLRKNTT--ALEN-YRRI---YVPPGI-PVKR--AQNEPLRVN 394 (545)
Q Consensus 326 -~~~~~i~id~d~~~~~~~~~~~-~~d~~~~l~~L~~~l~~~~~--~~~~-~~~~---~~~~~~-~~~~--~~~~~~~~~ 394 (545)
+..|++.++.-+.+-.+..-++ -.|.+..|.+|.+.|...+. .|.+ ..+. +..+.. +... .-+.-.+..
T Consensus 319 ~~~~k~l~lNV~~~da~K~~a~~lvaDAr~~L~~L~~~L~g~~~~~~w~~~~~~~~~~w~~~~~~~~a~~~~lnt~ptq~ 398 (617)
T COG3962 319 NPGVKFLNLNVQPFDAYKHDALPLVADARAGLEALSEALGGYRTAAGWTDERERLKAAWDAEADAPTAKNHFLNTLPTQT 398 (617)
T ss_pred CCCceEEEeecccccccccccceehhHHHHHHHHHHHHhcccccchhHHHHHHHhhhhhhhhcccccccccccccCccch
Confidence 6788999998777654222222 23899999999999976543 2211 1111 101100 0000 011234567
Q ss_pred HHHHHHHhhCCCCCEEEecCCccccccccc-cccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccH
Q 009060 395 VLFKHIQDMLSGDTAVIAETGDSWFNCQKL-RLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTA 473 (545)
Q Consensus 395 ~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~-~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~ 473 (545)
.++-.+++..+++++|++.+|+---....+ +...+.+|+...++++|||-++.++|+|+|.|+|.|++++|||||+|-.
T Consensus 399 ~vigav~~~~~~~svvvcAAGsLPGdLhkLW~~~~p~~YH~EYgfSCMGYEiaG~lG~K~a~pdreV~vmVGDGSymMln 478 (617)
T COG3962 399 QVIGAVQRTISDDSVVVCAAGSLPGDLHKLWRAGVPGTYHLEYGFSCMGYEIAGGLGAKAAEPDREVYVMVGDGSYMMLN 478 (617)
T ss_pred hHHHHHHhhcCCCcEEEEeCCCCcHHHHHHhccCCCCceeeeecccccccccccccccccCCCCCeEEEEEcccchhhhh
Confidence 899999999999999999988754333333 2233455999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEEeCCchhh-hhhh--cCC-CC----------CCCCCCCHHHHHHHcCCCCCceeEEEEeecee
Q 009060 474 QEISTMIRCGQRSIIFLINNGGYTI-EVEI--HDG-PY----------NVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKM 539 (545)
Q Consensus 474 ~eL~ta~~~~lpi~ivV~NN~~~g~-~~~~--~~~-~~----------~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~ 539 (545)
+||.|++.++++|+|++++|+|||- .+.+ +++ .| ..+..+||++.|++||++ .++|.+.+|
T Consensus 479 SEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~-----~~kv~~i~e 553 (617)
T COG3962 479 SELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGASFNNLLRDTDHEEEILQVDFAAHAESYGAK-----AYKVGTIEE 553 (617)
T ss_pred HHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcchhhhhhhhhcccCCCCcccHHHHHhhcCce-----eEecCCHHH
Confidence 9999999999999999999999996 3322 122 22 125789999999999995 788888887
Q ss_pred e
Q 009060 540 C 540 (545)
Q Consensus 540 ~ 540 (545)
|
T Consensus 554 L 554 (617)
T COG3962 554 L 554 (617)
T ss_pred H
Confidence 6
No 60
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.8e-54 Score=439.89 Aligned_cols=489 Identities=17% Similarity=0.150 Sum_probs=361.7
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHH
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (545)
+...++..+++.|.++||++++-+||+++.||.-++.+++.|+++.-.+|++|+|+|.|.||+++ |.+++||||++++|
T Consensus 6 ~nt~~a~v~~eeL~r~GV~~vvicPGSRSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~AN 85 (566)
T COG1165 6 PNTLWARVFLEELARLGVRDVVICPGSRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVAN 85 (566)
T ss_pred hhHHHHHHHHHHHHHcCCcEEEECCCCCCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhh
Confidence 45678999999999999999999999999999999998889999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHH-------HHHHHH
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHE-------LIDTAI 176 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~-------~l~~A~ 176 (545)
+++++.||..+++|||++|+|+|.+.+++| .+|++||..||..+++|+..+..|++-.+ .-.+++
T Consensus 86 l~PAViEA~~srvpLIVLTADRP~EL~~~G--------AnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~ 157 (566)
T COG1165 86 LYPAVIEANLSRVPLIVLTADRPPELRGCG--------ANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAA 157 (566)
T ss_pred ccHHHHhhhhcCCceEEEeCCCCHHHhcCC--------CchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988876 36789999999999999999988876443 334555
Q ss_pred HHhhhC-CCcEEEEeCCCCCCCCCCCCCCCCC-C----cc---cCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCcccc
Q 009060 177 STALKE-SKPVYISISCNLPGIPHPTFARDPV-P----FF---LAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIR 247 (545)
Q Consensus 177 ~~a~~~-~GPV~l~iP~dv~~~~~~~~~~~~~-~----~~---~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~ 247 (545)
..|++. +||||||+|++....+.+... ... + .. ....+......+..+.+ -..-.+||.+||+|.-..
T Consensus 158 ~~a~~~~~GpVHiN~PfrePL~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~rgviv~G~~~~ 234 (566)
T COG1165 158 QQARTPHAGPVHINVPFREPLVPDLEPE-GAGTPWGRPLGHWWFYTGPWTVDQGPDLLSE--WFFWRQKRGVIVAGRMSA 234 (566)
T ss_pred HhccCCCCCceEecCCCCccCCCCCCcc-ccccccccccCchhhcCCceeeecccccccc--hhhhcccCceEEEecCch
Confidence 666554 799999999997653211110 010 0 00 00000000000111121 123357999999997654
Q ss_pred ccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCC
Q 009060 248 VAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKK 327 (545)
Q Consensus 248 ~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~ 327 (545)
. ..+++.++++.+|+|+++++.+.- ++ ++..|...+.++.+.+-+.. |.||.+|.+.-+.....|-.....
T Consensus 235 ~--e~~~i~~~a~~lg~PilaDplS~l-----r~-~i~~yD~~L~~~~~~~~L~~-d~VI~fG~~~~SK~l~qwl~~~~~ 305 (566)
T COG1165 235 Q--EGKGILALANTLGWPILADPLSPL-----RN-YIPCYDLWLANPKAAEKLRP-DIVIQFGSPPTSKRLLQWLADTEP 305 (566)
T ss_pred h--hhHHHHHHHHHhCCceeccccccc-----CC-CcccchhhhcCchhhhhcCc-cEEEEeCCCcccHHHHHHHhccCC
Confidence 3 566699999999999999987531 11 14445555666666666555 999999999877766667654445
Q ss_pred CcEEEEcCCcceecCCCc---cccccHHHHHHHHHHHhccCchhhhhhhhhcCC--CCCCCcCCCCCCcCHHHHHHHHHh
Q 009060 328 EKAIIVQPHRVTVGNGPS---LGWVFMADFLSALAKKLRKNTTALENYRRIYVP--PGIPVKRAQNEPLRVNVLFKHIQD 402 (545)
Q Consensus 328 ~~~i~id~d~~~~~~~~~---~~~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~ 402 (545)
.+.|.||.....+++... ...+++..+++.+-.....++.+.++|...... ....... .+..++..+++.+|.+
T Consensus 306 ~~~~vvd~~~~~~Dp~~~~~~~~~~~v~~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~v~~~~-~~~~~~e~~~a~~l~~ 384 (566)
T COG1165 306 IEYWVVDPGGGWLDPSHHATTRLSADVATWARSIHPAGRIRKPWLDEWLALNEKARQAVRDQL-AAEALTEAHLAAALAD 384 (566)
T ss_pred CcEEEEcCCCCcCCcccccceEEEeehhHhHHHhccccccccHHHHHHHHHHHHHHHHHHHHh-cccCchhhHHHHHHHH
Confidence 689999987766542221 223577788866543332122223333211000 0000011 1126788999999999
Q ss_pred hCCCCCEEEecCCcccccccccc-ccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHH
Q 009060 403 MLSGDTAVIAETGDSWFNCQKLR-LPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIR 481 (545)
Q Consensus 403 ~l~~~~ivv~d~G~~~~~~~~~~-~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~ 481 (545)
.||+++.++..+++..+....+. .+.+.+.++++|.++|...+++|+|++.+. .+|+|+++||.||+|+++.|....+
T Consensus 385 ~lp~~~~LFvgNSmpVRdvd~~~~~~~~~~v~sNRGA~GIDG~vSTA~Gi~~a~-~~ptv~liGDLS~lhD~NgLl~~k~ 463 (566)
T COG1165 385 LLPPQDQLFVGNSMPVRDVDALGQLPAGYRVYSNRGASGIDGTVSTALGIARAT-QKPTVALIGDLSFLHDLNGLLLLKK 463 (566)
T ss_pred hCCCCCeEEEecCchhhhHHHhccCccCceeecCCCccccchhHHHHhhhhhhc-CCceEEEEechhhhhccchHhhcCC
Confidence 99999999998777777765543 347778999999999999999999999985 6889999999999999999999899
Q ss_pred hCCCeEEEEEeCCchhhhhhhc--------CCCCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 482 CGQRSIIFLINNGGYTIEVEIH--------DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 482 ~~lpi~ivV~NN~~~g~~~~~~--------~~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
...|++|||+||+|+||..... ++.|..-++.||+.+|+.||.+|. ++.+++|+
T Consensus 464 ~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~F~tPh~ldF~~la~~y~l~y~-----~~~s~~~l 525 (566)
T COG1165 464 VPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERLFGTPHGLDFAHLAATYGLEYH-----RPQSWDEL 525 (566)
T ss_pred CCCCeEEEEEeCCCceeeeeccCCCCcchHHHhcCCCCCCCHHHHHHHhCcccc-----ccCcHHHH
Confidence 9999999999999999932211 112334478999999999999864 55555554
No 61
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=100.00 E-value=1.3e-41 Score=309.79 Aligned_cols=161 Identities=25% Similarity=0.400 Sum_probs=150.8
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHHH
Q 009060 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLN 106 (545)
Q Consensus 28 ~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~ 106 (545)
|++++|++.|+++||++|||+||+++++|++++.+.++|++|.+|||++|+|||+||+|++| ++||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~ 80 (164)
T cd07039 1 TVADVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLN 80 (164)
T ss_pred CHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence 58999999999999999999999999999999976568999999999999999999999999 99999999999999999
Q ss_pred HHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcE
Q 009060 107 AIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPV 186 (545)
Q Consensus 107 ~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV 186 (545)
|+++||.+++|||+|+|+.++...+++ .+| ..||.++++++|||+.++++++++++.+++||+.|.+++|||
T Consensus 81 ~l~~A~~~~~Pvl~I~g~~~~~~~~~~-----~~q---~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~GPV 152 (164)
T cd07039 81 GLYDAKRDRAPVLAIAGQVPTDELGTD-----YFQ---EVDLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIAKRGVA 152 (164)
T ss_pred HHHHHHhcCCCEEEEecCCcccccCCC-----CCc---ccCHHHHHHHhhcEEEEeCCHHHHHHHHHHHHHHHhcCCCCE
Confidence 999999999999999999998866654 232 247899999999999999999999999999999999988999
Q ss_pred EEEeCCCCCC
Q 009060 187 YISISCNLPG 196 (545)
Q Consensus 187 ~l~iP~dv~~ 196 (545)
||+||.|++.
T Consensus 153 ~l~iP~dv~~ 162 (164)
T cd07039 153 VLILPGDVQD 162 (164)
T ss_pred EEEeChHHhc
Confidence 9999999976
No 62
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=100.00 E-value=6.8e-40 Score=298.18 Aligned_cols=162 Identities=52% Similarity=0.867 Sum_probs=149.5
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcchHHHHHHHHH
Q 009060 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAG 110 (545)
Q Consensus 31 ~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~~~l~~ 110 (545)
|+|++.|+++||++|||+||+.+++|++++.+.++|++|.+|||++|+|||+||+|+|+++||++|+|||++|+++||++
T Consensus 1 ~~l~~~L~~~Gi~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mA~gyar~t~~gv~~~t~GpG~~n~~~gl~~ 80 (162)
T cd07038 1 EYLLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVKGLGALVTTYGVGELSALNGIAG 80 (162)
T ss_pred CHHHHHHHHcCCCEEEEeCCccHHHHHHHHhhcCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCccHHHHHHHHHH
Confidence 57999999999999999999999999999976568999999999999999999999999999999999999999999999
Q ss_pred hHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEe
Q 009060 111 AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISI 190 (545)
Q Consensus 111 A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~i 190 (545)
|+.+++|||+|+|+.+....+++..+|+..+.+++.||.++++++|||+.++++++++++.+++||+.|.+++|||||+|
T Consensus 81 A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 81 AYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLTDPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 99999999999999998888877666655533344478999999999999999999999999999999999889999999
Q ss_pred CC
Q 009060 191 SC 192 (545)
Q Consensus 191 P~ 192 (545)
|.
T Consensus 161 P~ 162 (162)
T cd07038 161 PR 162 (162)
T ss_pred cC
Confidence 94
No 63
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=100.00 E-value=1.2e-39 Score=294.31 Aligned_cols=154 Identities=23% Similarity=0.278 Sum_probs=142.8
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHHHHHH
Q 009060 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIA 109 (545)
Q Consensus 31 ~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~l~ 109 (545)
++|++.|+++||++|||+||+.+.+|++++.++++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|+++||+
T Consensus 1 ~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~ 80 (162)
T cd07037 1 QALVEELKRLGVRDVVISPGSRSAPLALAAAEHPEFRLHVRVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVV 80 (162)
T ss_pred ChHHHHHHHCCCCEEEECCCcchHHHHHHHHhCCCceEEeccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHH
Confidence 36899999999999999999999999999976668999999999999999999999999 99999999999999999999
Q ss_pred HhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhh------HHHHHHHHHHHhhhC-
Q 009060 110 GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGD------AHELIDTAISTALKE- 182 (545)
Q Consensus 110 ~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~------~~~~l~~A~~~a~~~- 182 (545)
+|+.+++|||+|+|+.++...+++ .+| ..||..+++++|||+.+++++++ +++.+++|++.|.++
T Consensus 81 ~A~~~~~Pvl~i~g~~~~~~~~~~-----~~q---~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~ 152 (162)
T cd07037 81 EAYYSGVPLLVLTADRPPELRGTG-----ANQ---TIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAP 152 (162)
T ss_pred HHHhcCCCEEEEECCCCHHhcCCC-----CCc---ccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999998765554 232 35789999999999999999999 999999999999995
Q ss_pred CCcEEEEeCC
Q 009060 183 SKPVYISISC 192 (545)
Q Consensus 183 ~GPV~l~iP~ 192 (545)
||||||+||.
T Consensus 153 ~GPv~l~iP~ 162 (162)
T cd07037 153 PGPVHLNLPF 162 (162)
T ss_pred CCCEEEeccC
Confidence 7999999995
No 64
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=100.00 E-value=2e-38 Score=292.74 Aligned_cols=164 Identities=32% Similarity=0.462 Sum_probs=148.2
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHH
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (545)
||++|+|++.|+++||++|||+||+.+.+|+++|.+++++++|.+|||++|++||+||+|++| ++||++|+|||++|++
T Consensus 1 mt~~~~l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~ 80 (172)
T PF02776_consen 1 MTGAEALAEALKANGVTHVFGVPGSGNLPLLDALEKSPGIRFIPVRHEQGAAFMADGYARATGRPGVVIVTSGPGATNAL 80 (172)
T ss_dssp EEHHHHHHHHHHHTT-SEEEEE--GGGHHHHHHHHHTTTSEEEE-SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTH
T ss_pred CcHHHHHHHHHHHCCCeEEEEEeChhHhHHHHHhhhhcceeeecccCcchhHHHHHHHHHhhccceEEEeecccchHHHH
Confidence 799999999999999999999999999999999998768999999999999999999999999 9999999999999999
Q ss_pred HHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhh-CCC
Q 009060 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK-ESK 184 (545)
Q Consensus 106 ~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~-~~G 184 (545)
++|++|+.+++|||+|+|+++....+++ .++ +..||..++++++||+.++.+++++++.+++|++.|.. ++|
T Consensus 81 ~~l~~A~~~~~Pvl~i~g~~~~~~~~~~-----~~q--~~~d~~~~~~~~~k~~~~v~~~~~~~~~~~~A~~~a~~~~~g 153 (172)
T PF02776_consen 81 TGLANAYADRIPVLVITGQRPSAGEGRG-----AFQ--QEIDQQSLFRPVTKWSYRVTSPDDLPEALDRAFRAATSGRPG 153 (172)
T ss_dssp HHHHHHHHTT-EEEEEEEESSGGGTTTT-----STT--SSTHHHHHHGGGSSEEEEECSGGGHHHHHHHHHHHHHHCSTS
T ss_pred HHHhhcccceeeEEEEecccchhhhccc-----ccc--cchhhcchhccccchhcccCCHHHHHHHHHHHHHHhccCCCc
Confidence 9999999999999999999999876644 232 24589999999999999999999999999999999965 589
Q ss_pred cEEEEeCCCCCCC
Q 009060 185 PVYISISCNLPGI 197 (545)
Q Consensus 185 PV~l~iP~dv~~~ 197 (545)
||||+||.|++..
T Consensus 154 Pv~l~ip~dv~~~ 166 (172)
T PF02776_consen 154 PVYLEIPQDVQEA 166 (172)
T ss_dssp EEEEEEEHHHHTS
T ss_pred cEEEEcChhHhhC
Confidence 9999999999874
No 65
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=100.00 E-value=4.6e-32 Score=295.84 Aligned_cols=462 Identities=15% Similarity=0.075 Sum_probs=288.2
Q ss_pred CccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcchH
Q 009060 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 102 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~---~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~ 102 (545)
-|+|.++++..+.+.|++.+.++||++..++++.|.+. .++.++...+|.+|..||.| |-.+|.-++..|+|||+.
T Consensus 4 ~~~GneA~A~g~~~ag~~~~~~YPiTP~t~i~e~l~~~~~~~~~~~~~~~~E~~a~~~~~G-As~aG~ra~t~ts~~Gl~ 82 (595)
T TIGR03336 4 LLLGNEAIARGALEAGVGVAAAYPGTPSSEITDTLAKVAKRAGVYFEWSVNEKVAVEVAAG-AAWSGLRAFCTMKHVGLN 82 (595)
T ss_pred eecHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHhhhhccEEEEECcCHHHHHHHHHH-HHhcCcceEEEccCCchh
Confidence 48999999999999999999999999999999988753 35889999999999999999 666785566679999987
Q ss_pred HHHHHHHHhHh--cCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeE-EEEeCChhhHHHHHHHHHHHh
Q 009060 103 SVLNAIAGAYS--ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTA 179 (545)
Q Consensus 103 n~~~~l~~A~~--~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~a 179 (545)
-+.-+|..+.. -+.|++++.++++.... +..++ .|. ++.-.+.| .....+++++.++..+||+.|
T Consensus 83 ~~~e~l~~~~~~g~~~~iV~~~~~~~gp~~--------~~~~q--~d~--~~~~~~~~~vl~p~~~qE~~d~~~~Af~la 150 (595)
T TIGR03336 83 VAADPLMTLAYTGVKGGLVVVVADDPSMHS--------SQNEQ--DTR--HYAKFAKIPCLEPSTPQEAKDMVKYAFELS 150 (595)
T ss_pred hhHHHhhhhhhhcCcCceEEEEccCCCCcc--------chhhH--hHH--HHHHhcCCeEECCCCHHHHHHHHHHHHHHH
Confidence 77777766553 46789999998765521 12111 121 22222332 456667889999999999999
Q ss_pred hhCCCcEEEEeCCCCCCCCCCCCCCC--CCC----cccCCC--CCCch---hhH----HHHHHHHHHHHhcCCC------
Q 009060 180 LKESKPVYISISCNLPGIPHPTFARD--PVP----FFLAPK--VSNQL---GLE----AAVEATADFLNKAVKP------ 238 (545)
Q Consensus 180 ~~~~GPV~l~iP~dv~~~~~~~~~~~--~~~----~~~~~~--~~~~~---~~~----~~i~~~~~~l~~a~rp------ 238 (545)
...+-||.+..-..+.+..+++.... ..+ ....+. ...+. ... +.++++.+...+.+..
T Consensus 151 e~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (595)
T TIGR03336 151 EKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIARVRHKKLLSKQHKLREELNESPLNRLEING 230 (595)
T ss_pred HHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCceeccCC
Confidence 98889999988766554332221110 000 000000 00000 011 1222222222221111
Q ss_pred --EEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCC--CCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCC
Q 009060 239 --VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLV--PEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFN 314 (545)
Q Consensus 239 --vi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~--~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~ 314 (545)
++++..|.. ....++.++++|+-+ +++ ..-.|+ -.....+++++.+.||++-....
T Consensus 231 ~di~iv~~G~~----~~~a~ea~~~~Gi~~-------~v~~~~~i~Pl---------d~~~i~~~~~~~~~vivvEe~~~ 290 (595)
T TIGR03336 231 AKIGVIASGIA----YNYVKEALERLGVDV-------SVLKIGFTYPV---------PEGLVEEFLSGVEEVLVVEELEP 290 (595)
T ss_pred CCEEEEEcCHH----HHHHHHHHHHcCCCe-------EEEEeCCCCCC---------CHHHHHHHHhcCCeEEEEeCCcc
Confidence 334444432 223333444445432 111 111122 22345677889999999975431
Q ss_pred CCcccccccCCC--CCcEEEEcCCcceecCCCccccccHHHHHHHHHHHhccCchhhhhhhhhcCCCCCCCcCCCCCCcC
Q 009060 315 DYSSVGYSLLIK--KEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLR 392 (545)
Q Consensus 315 ~~~~~~~~~~~~--~~~~i~id~d~~~~~~~~~~~~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (545)
.. ......+.. ..++..+......+ .....+|.+.+.+.|.+. ...+.... .+.......+.++.-+..+.
T Consensus 291 ~~-~~~~~~~~~~~~~~v~~~G~~d~fi---~~~~~Ld~~~i~~~i~~~-~~~~~~~~--~~~~~~~~~~r~~~~C~GCp 363 (595)
T TIGR03336 291 VV-EEQVKALAGTAGLNIKVHGKEDGFL---PREGELNPDIVVNALAKF-GLAPSVTH--EKPVPKPLPVRPPSLCAGCP 363 (595)
T ss_pred HH-HHHHHHHHHhcCCCeEEecccCCcc---CcccCcCHHHHHHHHHHh-CCCccccc--ccccccccCCCCCCCCCCCC
Confidence 10 000011111 11233333322111 122346777787777553 21111000 00000011122334556688
Q ss_pred HHHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhccc
Q 009060 393 VNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT 472 (545)
Q Consensus 393 ~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~ 472 (545)
...+++.|++.+|+|.+++.|+|++..|.. .+..++. .+++||+++|+|+|++++.|+++||+++|||+|+|+
T Consensus 364 ~~~~~~~l~~~l~~d~ivv~D~G~~~~~~~-----~p~~~~~--~~~~mG~~~~~AiGa~~a~p~~~Vv~i~GDG~f~~~ 436 (595)
T TIGR03336 364 HRATFYAMKKVADREAIFPSDIGCYTLGIQ-----PPLGTVD--TTLCMGASIGVASGLSKAGEKQRIVAFIGDSTFFHT 436 (595)
T ss_pred ChHHHHHHHHhccCCcEEecCcchhhcccc-----CCccccc--eeeccCchHHHHhhhhhcCCCCCEEEEeccchhhhc
Confidence 888999999999999999999999877642 1222332 358999999999999999999999999999999997
Q ss_pred -HHHHHHHHHhCCCeEEEEEeCCchhhhhhh-cCC-CC----CCCCCCCHHHHHHHcCCCCCceeEEEEeecee
Q 009060 473 -AQEISTMIRCGQRSIIFLINNGGYTIEVEI-HDG-PY----NVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKM 539 (545)
Q Consensus 473 -~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~-~~~-~~----~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~ 539 (545)
++||+|++++++|+++||+||++|++...+ ... .+ ...+++||+++|++||++ +.+|.+.++
T Consensus 437 g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~-----~~~v~~~~~ 505 (595)
T TIGR03336 437 GIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEELCRASGVE-----FVEVVDPLN 505 (595)
T ss_pred CHHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHHHHHHcCCC-----EEEEeCcCC
Confidence 999999999999999999999999982211 111 11 234679999999999996 567777654
No 66
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=100.00 E-value=8.7e-32 Score=273.26 Aligned_cols=306 Identities=21% Similarity=0.233 Sum_probs=208.5
Q ss_pred CCCEEEecCCCChHHHHHhhh-cCCCCeEEecCchhHHHHHHhHHhhhcC--ceEEEEcCCcc-hHHHHHHHHHhHhcCC
Q 009060 41 GAKDVFSVPGDFNLTLLDHLI-AEPELNLVGCCNELNAGYAADGYARSRG--VGACVVTFTVG-GLSVLNAIAGAYSENL 116 (545)
Q Consensus 41 GV~~vFg~pG~~~~~l~~al~-~~~~i~~i~~~hE~~A~~~A~gyar~tg--~gv~~~t~GpG-~~n~~~~l~~A~~~~~ 116 (545)
||++++|+|.+...+|++.+. +.+.+++|.+.+|..|+.+|.||+..|| +.|.|..||.| ..|.++.|++....++
T Consensus 1 gi~~~~gvP~s~l~~~~~~~~~~~~~~~~i~~~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~i 80 (361)
T TIGR03297 1 GFDFFSGVPDSLLKPFCNYITDNNRDLRHVIAANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDI 80 (361)
T ss_pred CceEEEeCcHHHHHHHHHHHHhcCCCceEEecCCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCc
Confidence 799999999999999999998 4458999999999999999999999998 56777888887 5566666666788999
Q ss_pred cEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhc-eeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCCC
Q 009060 117 PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAI-TCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195 (545)
Q Consensus 117 Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv~ 195 (545)
|+|+|.|.+..... ++...|..+| .-..++++.+ .+|..--.+.++..+.+++|++.+.....|+.|-++.+.+
T Consensus 81 P~l~~i~~RG~~g~-~depqh~~~G----~~t~~lL~~~~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 81 PLLLIVGWRGEPGV-HDEPQHVKQG----RITLSLLDALEIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred CeeEEEecCCCCCC-CCCchhhHHh----HHHHHHHHHcCCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 99999998765411 1111111111 0012223322 1111111223333344444444444333444443333322
Q ss_pred CCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccC
Q 009060 196 GIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGL 275 (545)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~ 275 (545)
..
T Consensus 156 ~~------------------------------------------------------------------------------ 157 (361)
T TIGR03297 156 AS------------------------------------------------------------------------------ 157 (361)
T ss_pred cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred CCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecCCCccccccHHHHH
Q 009060 276 VPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFL 355 (545)
Q Consensus 276 ~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~d~~~~l 355 (545)
| . .+. . . .+
T Consensus 158 -----------~----------------------------------~--~~~----------~--~-~~----------- 166 (361)
T TIGR03297 158 -----------Y----------------------------------K--LKG----------E--P-AN----------- 166 (361)
T ss_pred -----------c----------------------------------c--ccc----------C--C-CC-----------
Confidence 0 0 000 0 0 00
Q ss_pred HHHHHHhccCchhhhhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcccccccccccc---C-CCe
Q 009060 356 SALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLP---E-NCG 431 (545)
Q Consensus 356 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~---~-~~~ 431 (545)
.....+++.++++.+.+.++++++++.|.|...+....+... . ++.
T Consensus 167 ------------------------------~~~~~~~r~~ai~~i~~~l~~~~iVV~~~G~~s~el~~~~~~~~~~~~~~ 216 (361)
T TIGR03297 167 ------------------------------PLPTLMTREEAIAAILDHLPDNTVIVSTTGKTSRELYELRDRIGQGHARD 216 (361)
T ss_pred ------------------------------CCcCCCCHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHhhcccccCCCCc
Confidence 000136788899999999999999999999865432222111 1 234
Q ss_pred eEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCC-CeEEEEEeCCchhhhhhhcCCCCCCC
Q 009060 432 YEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQ-RSIIFLINNGGYTIEVEIHDGPYNVI 510 (545)
Q Consensus 432 ~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~l-pi~ivV~NN~~~g~~~~~~~~~~~~l 510 (545)
++. .|+||+++|+|+|++++.|+|+||+++|||+|+|+++||+|++++++ |+++||+||++|++ ..+..+..
T Consensus 217 f~~---~GsMG~a~p~AlG~ala~p~r~Vv~i~GDGsflm~~~eL~t~~~~~~~nli~VVlNNg~~~~----~g~q~~~~ 289 (361)
T TIGR03297 217 FLT---VGSMGHASQIALGLALARPDQRVVCLDGDGAALMHMGGLATIGTQGPANLIHVLFNNGAHDS----VGGQPTVS 289 (361)
T ss_pred eEe---echhhhHHHHHHHHHHHCCCCCEEEEEChHHHHHHHHHHHHHHHhCCCCeEEEEEcCccccc----cCCcCCCC
Confidence 554 49999999999999999999999999999999999999999999996 89999999999987 12222223
Q ss_pred CCCCHHHHHHHcCCCCCceeEEEEeeceeeE
Q 009060 511 KNWDYTGLVNAIHNGEGKCWTAKVSIYKMCV 541 (545)
Q Consensus 511 ~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~~ 541 (545)
.++||.++|++||+. .+++|++.+|+.
T Consensus 290 ~~~d~~~iA~a~G~~----~~~~v~~~~eL~ 316 (361)
T TIGR03297 290 QHLDFAQIAKACGYA----KVYEVSTLEELE 316 (361)
T ss_pred CCCCHHHHHHHCCCc----eEEEeCCHHHHH
Confidence 579999999999975 367888887763
No 67
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=100.00 E-value=1.1e-32 Score=250.51 Aligned_cols=153 Identities=28% Similarity=0.378 Sum_probs=142.3
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHHHHHH
Q 009060 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIA 109 (545)
Q Consensus 31 ~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~l~ 109 (545)
|+|++.|+++||+++||+||+.+.++++++. .+++++|.++||++|++||+||+|++| +++|++|+|||++|+++++.
T Consensus 1 ~~i~~~L~~~Gv~~vfg~pg~~~~~l~~~~~-~~~~~~i~~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~ 79 (155)
T cd07035 1 DALVEALKAEGVDHVFGVPGGAILPLLDALA-RSGIRYILVRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLA 79 (155)
T ss_pred CHHHHHHHHcCCCEEEECCCCchHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHH
Confidence 5799999999999999999999999999998 468999999999999999999999999 99999999999999999999
Q ss_pred HhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-CCcEEE
Q 009060 110 GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SKPVYI 188 (545)
Q Consensus 110 ~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~GPV~l 188 (545)
+|+.+++|||+|+|+++....+++. ++ ..||.+++++++||+.++++++++.+.+++|++.|.++ +|||||
T Consensus 80 ~A~~~~~Pll~i~~~~~~~~~~~~~-----~q---~~d~~~~~~~~~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l 151 (155)
T cd07035 80 NAYLDSIPLLVITGQRPTAGEGRGA-----FQ---EIDQVALFRPITKWAYRVTSPEEIPEALRRAFRIALSGRPGPVAL 151 (155)
T ss_pred HHHhhCCCEEEEeCCCccccccCCc-----cc---ccCHHHHHHHHhceEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 9999999999999999988666542 22 35789999999999999999999999999999999986 799999
Q ss_pred EeCC
Q 009060 189 SISC 192 (545)
Q Consensus 189 ~iP~ 192 (545)
+||.
T Consensus 152 ~ip~ 155 (155)
T cd07035 152 DLPK 155 (155)
T ss_pred EecC
Confidence 9984
No 68
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.97 E-value=1.2e-31 Score=253.77 Aligned_cols=148 Identities=20% Similarity=0.249 Sum_probs=126.8
Q ss_pred CCCcCHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcc
Q 009060 388 NEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGD 466 (545)
Q Consensus 388 ~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GD 466 (545)
..++++.++++.|++.+|+|++++.|+|++..|+ .++..+++++++.+.++|+|||++|+|||+++|+|+|+||+|+||
T Consensus 5 ~~~l~~~~~~~~l~~~l~~d~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~GD 84 (202)
T cd02006 5 DVPIKPQRVYEEMNKAFGRDVRYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGD 84 (202)
T ss_pred CCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcCcCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEeC
Confidence 3469999999999999999999999999987664 456677777789888999999999999999999999999999999
Q ss_pred hhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhh----hcCCC-----CCC-------CCCCCHHHHHHHcCCCCCcee
Q 009060 467 GSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVE----IHDGP-----YNV-------IKNWDYTGLVNAIHNGEGKCW 530 (545)
Q Consensus 467 Gsf~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~----~~~~~-----~~~-------l~~~d~~~lA~a~G~~~~~~~ 530 (545)
|||+|+++||+|++||++|+++||+||++|++.+. ++... +.. .+++||+++|++||++
T Consensus 85 G~f~m~~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~----- 159 (202)
T cd02006 85 YDFQFMIEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCK----- 159 (202)
T ss_pred hHhhccHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCE-----
Confidence 99999999999999999999999999999998221 11111 111 1369999999999995
Q ss_pred EEEEeeceee
Q 009060 531 TAKVSIYKMC 540 (545)
Q Consensus 531 ~~~v~~~~~~ 540 (545)
+++|++++||
T Consensus 160 ~~~v~~~~el 169 (202)
T cd02006 160 AIRVTKPEEL 169 (202)
T ss_pred EEEECCHHHH
Confidence 6789988876
No 69
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.97 E-value=2.5e-31 Score=250.19 Aligned_cols=147 Identities=18% Similarity=0.325 Sum_probs=127.9
Q ss_pred CCcCHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcch
Q 009060 389 EPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG 467 (545)
Q Consensus 389 ~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDG 467 (545)
.++++.++++.|++.+|++++++.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++|+|+|+||+++|||
T Consensus 2 ~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG 81 (196)
T cd02013 2 NPMHPRQVLRELEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDG 81 (196)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcch
Confidence 468999999999999999999999999987654 4566677778999999999999999999999999999999999999
Q ss_pred hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhh----hhcCCCC--CCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 468 SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEV----EIHDGPY--NVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 468 sf~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~----~~~~~~~--~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+|+|+++||+|+++|++|+++||+||++|++.+ ..++..+ .+++++||+++|++||++ +.+|++.+||
T Consensus 82 ~f~m~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~-----~~~v~~~~el 155 (196)
T cd02013 82 AWGMSMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESFAKIAEACGAK-----GITVDKPEDV 155 (196)
T ss_pred HHhccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCE-----EEEECCHHHH
Confidence 999999999999999999999999999999832 1222222 355679999999999996 6788888776
No 70
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=99.97 E-value=2.9e-30 Score=235.74 Aligned_cols=154 Identities=19% Similarity=0.078 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhc----CCCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcchHHH
Q 009060 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA----EPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV 104 (545)
Q Consensus 29 ~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~----~~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~ 104 (545)
++|+|++.|+++||++|||+||+.+.++++++.+ .++|++|.++||++|++||+||+|.++. +|++|+|||++|+
T Consensus 1 g~e~i~~~L~~~gv~~vfg~PG~~~~~~~~~l~~~~~~~~~i~~i~~~~E~~A~~~A~g~~r~~~~-v~~~~~gpG~~n~ 79 (160)
T cd07034 1 GNEAVARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAESEHAAAEAAIGASAAGAR-AMTATSGPGLNLM 79 (160)
T ss_pred ChHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhccCCCcEEEEeCCHHHHHHHHHHHHhhCCc-EEEeeCcchHHHH
Confidence 4799999999999999999999999999999964 4589999999999999999999997668 9999999999999
Q ss_pred HHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCC
Q 009060 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (545)
Q Consensus 105 ~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~G 184 (545)
+++|++|+.+++|||+|+|+++....+.. +. . ++-.|+..++++ +||+.++.+++++++++++|++.|.++++
T Consensus 80 ~~~l~~a~~~~~P~v~i~g~~~~~~~~~~---~~-~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~~ 152 (160)
T cd07034 80 AEALYLAAGAELPLVIVVAQRPGPSTGLP---KP-D--QSDLMAARYGGH-PWPVLAPSSVQEAFDLALEAFELAEKYRL 152 (160)
T ss_pred HHHHHHHHhCCCCEEEEEeeCCCCCCCCC---Cc-C--cHHHHHHHhCCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999988754420 11 1 123578899999 99999999999999999999999999779
Q ss_pred cEEEEe
Q 009060 185 PVYISI 190 (545)
Q Consensus 185 PV~l~i 190 (545)
||+|.+
T Consensus 153 Pv~l~~ 158 (160)
T cd07034 153 PVIVLS 158 (160)
T ss_pred CEEEEc
Confidence 999865
No 71
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.96 E-value=5.1e-30 Score=237.08 Aligned_cols=143 Identities=15% Similarity=0.215 Sum_probs=123.2
Q ss_pred HHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcc
Q 009060 393 VNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQV 471 (545)
Q Consensus 393 ~~~~~~~l~~~l~~~~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~ 471 (545)
|.+++++|++.+|++++++.|+|++..|. .++...++.+++.+.++|+|||++|+|+|+++++|+++||+|+|||+|+|
T Consensus 1 p~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~m 80 (177)
T cd02010 1 PQRIVHDLRAVMGDDDIVLLDVGAHKIWMARYYRTYAPNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGFMM 80 (177)
T ss_pred CHHHHHHHHHHCCCCcEEEecCcHHHHHHHHhCCcCCCCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHHHh
Confidence 35789999999999999999999987664 34556666779999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCCeEEEEEeCCchhhhhh----hcCC-CCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 472 TAQEISTMIRCGQRSIIFLINNGGYTIEVE----IHDG-PYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 472 ~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~----~~~~-~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+++||+|++||++|+++||+||++|++.+. .+.. .+.+++++||+++|++||++ +++|++++|+
T Consensus 81 ~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~el 149 (177)
T cd02010 81 NSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYAESFGAK-----GYRIESADDL 149 (177)
T ss_pred HHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCcccCcCCCCCHHHHHHHCCCE-----EEEECCHHHH
Confidence 999999999999999999999999998221 1111 23455779999999999996 6788888876
No 72
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.96 E-value=1.9e-29 Score=235.81 Aligned_cols=145 Identities=25% Similarity=0.364 Sum_probs=124.3
Q ss_pred cCHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhh
Q 009060 391 LRVNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF 469 (545)
Q Consensus 391 ~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf 469 (545)
+++.++++.|++.+|+|++++.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||++++.|+|+||+++|||+|
T Consensus 1 ~~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f 80 (186)
T cd02015 1 IKPQEVIKELSELTPGDAIVTTDVGQHQMWAAQYYRFKKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSF 80 (186)
T ss_pred CCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccHH
Confidence 4678899999999999999999999986554 456666777899999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCCeEEEEEeCCchhhhhh----hcCCCCC--C-CCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 470 QVTAQEISTMIRCGQRSIIFLINNGGYTIEVE----IHDGPYN--V-IKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 470 ~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~----~~~~~~~--~-l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+|+++||+|+++|++|+++||+||++|++.+. .+.+.+. . .+++||+++|++||++ +.+|++.+|+
T Consensus 81 ~~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~el 153 (186)
T cd02015 81 QMNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSHTTLDSNPDFVKLAEAYGIK-----GLRVEKPEEL 153 (186)
T ss_pred hccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceeeccCCCCCCHHHHHHHCCCc-----eEEeCCHHHH
Confidence 99999999999999999999999999998221 1222222 2 3679999999999996 5688887776
No 73
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.96 E-value=1.2e-28 Score=223.69 Aligned_cols=154 Identities=29% Similarity=0.379 Sum_probs=140.3
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcchHHHHHHHHH
Q 009060 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAG 110 (545)
Q Consensus 31 ~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~~~l~~ 110 (545)
++|++.|+++||+++||+||+...++++++.+.++++++.++||++|++||+||+|.+++++|++++|||++|+++++.+
T Consensus 1 ~~~~~~l~~~gv~~vfg~pg~~~~~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~~ 80 (154)
T cd06586 1 AAFAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLAD 80 (154)
T ss_pred ChHHHHHHHcCCCEEEEcCCcchHHHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHHH
Confidence 47899999999999999999999999999987678999999999999999999999999999999999999999999999
Q ss_pred hHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEe
Q 009060 111 AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISI 190 (545)
Q Consensus 111 A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~i 190 (545)
|+.+++|||+|+++++....+.+ .+ +..+|..++++++||...+.++++.++.+.+|++.|.+++|||+|++
T Consensus 81 a~~~~~Pvl~i~~~~~~~~~~~~-----~~---q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 81 AAAEHLPVVFLIGARGISAQAKQ-----TF---QSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred HHhcCCCEEEEeCCCChhhhccC-----cc---cccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 99999999999999887643332 12 23568899999999999999999999999999999988899999999
Q ss_pred CC
Q 009060 191 SC 192 (545)
Q Consensus 191 P~ 192 (545)
|.
T Consensus 153 p~ 154 (154)
T cd06586 153 PR 154 (154)
T ss_pred cC
Confidence 84
No 74
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.96 E-value=2.6e-29 Score=233.67 Aligned_cols=150 Identities=47% Similarity=0.742 Sum_probs=127.5
Q ss_pred CcCHHHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhh
Q 009060 390 PLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF 469 (545)
Q Consensus 390 ~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf 469 (545)
|+++.++++.|++.++++.+++.|+|++.+...++..+++++++.+.++|+|||++|+|+|++++.|+++|++++|||+|
T Consensus 1 ~l~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG~f 80 (183)
T cd02005 1 PLTQARLWQQVQNFLKPNDILVAETGTSWFGALDLKLPKGTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGSF 80 (183)
T ss_pred CCCHHHHHHHHHHhcCCCCEEEECCchHHHhhhhccCCCCCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEECCchh
Confidence 57899999999999999999999999986545556667777899999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcC--CCCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 470 QVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHD--GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 470 ~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~~--~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+|+++||+|+++|++|+++||+||++|++.+..++ ..+.++.++||.++|++||+ ...+.+.+|++.+|+
T Consensus 81 ~~~~~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ia~a~G~-~~~~~~~~v~~~~el 152 (183)
T cd02005 81 QMTVQELSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYNDIANWNYTKLPEVFGG-GGGGLSFRVKTEGEL 152 (183)
T ss_pred hccHHHHHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcccCCCCCHHHHHHHhCC-CccccEEEecCHHHH
Confidence 99999999999999999999999999998332222 23455667999999999993 111246788887776
No 75
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.96 E-value=4.8e-29 Score=236.34 Aligned_cols=142 Identities=23% Similarity=0.391 Sum_probs=121.0
Q ss_pred HHHHHHHHhhCCCCCEEEecCCccccccc-cccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhccc
Q 009060 394 NVLFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT 472 (545)
Q Consensus 394 ~~~~~~l~~~l~~~~ivv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~ 472 (545)
.++++.|++.+|++++++.|+|++..|.. ++...++.+++.+.++|+|||++|+|||+|+++|+++||+++|||+|+|+
T Consensus 2 ~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDGsf~m~ 81 (205)
T cd02003 2 TEVLGALNEAIGDDDVVINAAGSLPGDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYLML 81 (205)
T ss_pred hhHHHHHHHhCCCCCEEEECCCcchHHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccchhhcc
Confidence 35789999999999999999999887654 45666677799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCchhhhhhh----cCCC----C-----------CCCCCCCHHHHHHHcCCCCCceeEEE
Q 009060 473 AQEISTMIRCGQRSIIFLINNGGYTIEVEI----HDGP----Y-----------NVIKNWDYTGLVNAIHNGEGKCWTAK 533 (545)
Q Consensus 473 ~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~----~~~~----~-----------~~l~~~d~~~lA~a~G~~~~~~~~~~ 533 (545)
++||+|++||++|+++||+||++|++.+.. .... + ...+++||.++|++||++ +.+
T Consensus 82 ~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~-----~~~ 156 (205)
T cd02003 82 HSEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGAR-----VEK 156 (205)
T ss_pred HHHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCE-----EEE
Confidence 999999999999999999999999982211 1111 1 123579999999999996 678
Q ss_pred Eeeceee
Q 009060 534 VSIYKMC 540 (545)
Q Consensus 534 v~~~~~~ 540 (545)
|++++|+
T Consensus 157 v~~~~el 163 (205)
T cd02003 157 VKTIEEL 163 (205)
T ss_pred ECCHHHH
Confidence 8888876
No 76
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.96 E-value=3.5e-29 Score=231.34 Aligned_cols=143 Identities=17% Similarity=0.116 Sum_probs=120.8
Q ss_pred CHHHHHHHHHhhCCCCCEEEecCCccccccc-cccc-cCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhh
Q 009060 392 RVNVLFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRL-PENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF 469 (545)
Q Consensus 392 ~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~-~~~~-~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf 469 (545)
+...++++|++.+|++.+++.|+|++..|.. ++.. +++.+++.+.++|+||+++|+|||+|++. +|+||+++|||||
T Consensus 2 ~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~aiGa~la~-~~~Vv~i~GDGsf 80 (175)
T cd02009 2 TEPALARALPDHLPEGSQLFVGNSMPIRDLDLFALPSDKTVRVFANRGASGIDGTLSTALGIALAT-DKPTVLLTGDLSF 80 (175)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCHHHHHHHHccCccCCCceEEecCCccchhhHHHHHHHHHhcC-CCCEEEEEehHHH
Confidence 3456899999999999999999999987764 4555 66678999999999999999999999998 9999999999999
Q ss_pred cccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc----CCCCCC-C---CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 470 QVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH----DGPYNV-I---KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 470 ~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~----~~~~~~-l---~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+|+++||+|++||++|+++||+||++|++.+... ...+.. . +++||+++|++||++ +++|++.+|+
T Consensus 81 ~m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~-----~~~v~~~~el 154 (175)
T cd02009 81 LHDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEFERLFGTPQGLDFEHLAKAYGLE-----YRRVSSLDEL 154 (175)
T ss_pred HHhHHHHHhccccCCCeEEEEEECCCCchheeccCCcccchhhhhhcCCCCCCHHHHHHHcCCC-----eeeCCCHHHH
Confidence 9999999999999999999999999999832111 112211 1 479999999999997 5688888776
No 77
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.95 E-value=5.2e-28 Score=224.37 Aligned_cols=146 Identities=16% Similarity=0.244 Sum_probs=125.9
Q ss_pred CcCHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchh
Q 009060 390 PLRVNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGS 468 (545)
Q Consensus 390 ~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGs 468 (545)
++++.+++++|++.++++++++.|+|++..+. .++..+++++++.+.++|+|||++|+|+|+++++|+++||+++|||+
T Consensus 1 ~~~~~~~~~~l~~~~~~~~ii~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~ 80 (178)
T cd02014 1 PIHPERVAAELNKRAPDDAIFTIDVGNVTVWAARHLRMNGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGG 80 (178)
T ss_pred CCCHHHHHHHHHhHCCCCeEEEEcCcHHHHHHHHhcccCCCCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchH
Confidence 36889999999999999999999999987654 45667777789999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHhCCCeEEEEEeCCchhhhhh---hcCCC-C-CCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 469 FQVTAQEISTMIRCGQRSIIFLINNGGYTIEVE---IHDGP-Y-NVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 469 f~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~---~~~~~-~-~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
|+|+.+||+|++++++|+++||+||++|++.+. ....+ + ++++++||.++|++||++ ++++++++|+
T Consensus 81 f~~~~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~-----~~~v~~~~el 152 (178)
T cd02014 81 FAMLMGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAMGIK-----GIRVEDPDEL 152 (178)
T ss_pred HHhhHHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCceeccCCCCCHHHHHHHCCCe-----EEEeCCHHHH
Confidence 999999999999999999999999999998221 11222 2 345789999999999995 5678888775
No 78
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.95 E-value=4.1e-28 Score=224.06 Aligned_cols=143 Identities=21% Similarity=0.293 Sum_probs=121.8
Q ss_pred HHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcc
Q 009060 393 VNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQV 471 (545)
Q Consensus 393 ~~~~~~~l~~~l~~~~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~ 471 (545)
|.++++.|++.+|++++++.|+|++..|. .++..+++.+++.+.++|+||+++|+|||++++.|+++|++++|||+|+|
T Consensus 1 p~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG~f~~ 80 (172)
T cd02004 1 PYRVLHELQEALPDDAIIVSDGGNTMDWARYILRPRKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGAFGF 80 (172)
T ss_pred CHHHHHHHHHHCCCCcEEEEcCchHHHHHHHHccccCCCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcchhhcC
Confidence 35689999999999999999999987554 44566666779988899999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCCeEEEEEeCCchhhhhh----hc-CC--CCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 472 TAQEISTMIRCGQRSIIFLINNGGYTIEVE----IH-DG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 472 ~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~----~~-~~--~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+.+||+|++++++|+++||+||++|++.+. .+ +. ....++.+||.++|++||++ +.+|++.+|+
T Consensus 81 ~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~-----~~~v~~~~el 151 (172)
T cd02004 81 SGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTRYDLVAEAFGGK-----GELVTTPEEL 151 (172)
T ss_pred CHHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCCceeccCCCCCHHHHHHHCCCe-----EEEECCHHHH
Confidence 999999999999999999999999998221 11 11 12345789999999999996 6788887765
No 79
>PRK06163 hypothetical protein; Provisional
Probab=99.94 E-value=6.4e-27 Score=219.29 Aligned_cols=139 Identities=21% Similarity=0.231 Sum_probs=115.2
Q ss_pred CCcCHHHHHHHHHhhCCCCCEEEecCCccc--cccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcc
Q 009060 389 EPLRVNVLFKHIQDMLSGDTAVIAETGDSW--FNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGD 466 (545)
Q Consensus 389 ~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~--~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GD 466 (545)
-.++..++++.|.+.++++++++.|+|++. .|... ..+.+++ .+|+|||++|+|||+++|+|+++||+++||
T Consensus 11 ~~~~~~~~i~~l~~~l~~~~~iv~D~G~~~~~~~~~~---~~~~~~~---~~GsMG~glpaAiGaalA~p~r~Vv~i~GD 84 (202)
T PRK06163 11 KVMNRFDLTCRLVAKLKDEEAVIGGIGNTNFDLWAAG---QRPQNFY---MLGSMGLAFPIALGVALAQPKRRVIALEGD 84 (202)
T ss_pred CCcCHHHHHHHHHHhcCCCCEEEECCCccHHHHHHhh---cCCCCeE---eecccccHHHHHHHHHHhCCCCeEEEEEcc
Confidence 468899999999999999999999999743 44432 1233355 389999999999999999999999999999
Q ss_pred hhhcccHHHHHHHHHh-CCCeEEEEEeCCchhhhhhhcCCCCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 467 GSFQVTAQEISTMIRC-GQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 467 Gsf~~~~~eL~ta~~~-~lpi~ivV~NN~~~g~~~~~~~~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
|+|+|+++||+|+++| ++|+++||+||++|++.. ...+...+++||+++|++||++. +++|++.+|+
T Consensus 85 G~f~m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~---~~~~~~~~~~Df~~lA~a~G~~~----~~~v~~~~el 152 (202)
T PRK06163 85 GSLLMQLGALGTIAALAPKNLTIIVMDNGVYQITG---GQPTLTSQTVDVVAIARGAGLEN----SHWAADEAHF 152 (202)
T ss_pred hHHHHHHHHHHHHHHhcCCCeEEEEEcCCchhhcC---CccCCCCCCCCHHHHHHHCCCce----EEEeCCHHHH
Confidence 9999999999999987 689999999999999831 11233346799999999999962 4678888776
No 80
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.94 E-value=4.9e-27 Score=218.30 Aligned_cols=144 Identities=25% Similarity=0.347 Sum_probs=120.8
Q ss_pred cCHHHHHHHHHhhCCCCCEEEecCCccccccc-cccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhh
Q 009060 391 LRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF 469 (545)
Q Consensus 391 ~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf 469 (545)
++|.+++++|++.+|++++++.|+|++..|.. ++...++.+++.+.+ |+||+++|+|+|+++|.|+++|++++|||+|
T Consensus 1 ~~~~~~~~~l~~~l~~~~~iv~d~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i~GDG~f 79 (178)
T cd02002 1 LTPEYLAAALAAALPEDAIIVDEAVTNGLPLRDQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAIIGDGSF 79 (178)
T ss_pred CCHHHHHHHHHhhCCCCeEEEecCCcccHHHHHhcccCCCCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEEEcCchh
Confidence 46788999999999999999999999876654 344445667888888 9999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCCeEEEEEeCCchhhhh----hhcCC-----C--CC--CCCCCCHHHHHHHcCCCCCceeEEEEee
Q 009060 470 QVTAQEISTMIRCGQRSIIFLINNGGYTIEV----EIHDG-----P--YN--VIKNWDYTGLVNAIHNGEGKCWTAKVSI 536 (545)
Q Consensus 470 ~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~----~~~~~-----~--~~--~l~~~d~~~lA~a~G~~~~~~~~~~v~~ 536 (545)
+|+.+||+|++++++|+++||+||++|++.+ ..+.. . .. ..+.+||.++|++||++ +++|++
T Consensus 80 ~~~~~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~ 154 (178)
T cd02002 80 MYTIQALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVE-----AERVET 154 (178)
T ss_pred hccHHHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHcCCc-----eEEeCC
Confidence 9999999999999999999999999999822 11111 1 11 23569999999999997 567887
Q ss_pred ceee
Q 009060 537 YKMC 540 (545)
Q Consensus 537 ~~~~ 540 (545)
.+|+
T Consensus 155 ~~el 158 (178)
T cd02002 155 PEEL 158 (178)
T ss_pred HHHH
Confidence 7765
No 81
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.94 E-value=2.9e-26 Score=206.29 Aligned_cols=152 Identities=19% Similarity=0.211 Sum_probs=122.0
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEE-ecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHHHHH
Q 009060 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLV-GCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAI 108 (545)
Q Consensus 31 ~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i-~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~l 108 (545)
|+|++.|+++||+++||+||+.+.+|++++.. +|++| .+|||+++++||++| |.+| ++||+.++|+| |++++|
T Consensus 2 ~~~v~~L~~~Gv~~vfGvPg~~~~~l~dal~~--~i~~i~~~~ee~aa~~aAg~~-~~~~~~~v~~~~sG~g--n~~~~l 76 (157)
T TIGR03845 2 EAVYNILKDAGIDLVASVPCDNLKNLLPLIEK--DFRHIPLTREEEGVGICAGAY-LAGKKPAILMQSSGLG--NSINAL 76 (157)
T ss_pred hHHHHHHHHCCCeEEEecCcHhHHHHHHHHHh--CCcEEecCChHHHHHHHHHHH-HhcCCcEEEEeCCcHH--HHHHHH
Confidence 68999999999999999999999999999953 49999 899999999999998 8888 78888888866 999999
Q ss_pred HHhH-hcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEE
Q 009060 109 AGAY-SENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVY 187 (545)
Q Consensus 109 ~~A~-~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~ 187 (545)
++|+ .+++|||+|+|++......... |-..+ .. +...+..+--++.++++++++ +.+++|++.|.+.+|||+
T Consensus 77 ~~a~~~~~~Pvl~i~g~rg~~~~~~~~--q~~~g---~~-~~~~l~~~~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~ 149 (157)
T TIGR03845 77 ASLNKTYGIPLPILASWRGVYKEKIPA--QIPMG---RA-TPKLLDTLGIPYTIPREPEEA-KLIEKAISDAYENSRPVA 149 (157)
T ss_pred HHHHHcCCCCEEEEEeccCCCCCCCcc--ccchh---hh-hHHHHHHcCCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEE
Confidence 9999 9999999999998873111000 00011 00 112222222267899999999 999999999999889999
Q ss_pred EEeCCCC
Q 009060 188 ISISCNL 194 (545)
Q Consensus 188 l~iP~dv 194 (545)
|-++.++
T Consensus 150 il~~~~~ 156 (157)
T TIGR03845 150 ALLDPKY 156 (157)
T ss_pred EEEeCCc
Confidence 9999775
No 82
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.93 E-value=3.3e-26 Score=207.04 Aligned_cols=132 Identities=18% Similarity=0.164 Sum_probs=109.2
Q ss_pred HHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccH
Q 009060 394 NVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTA 473 (545)
Q Consensus 394 ~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~ 473 (545)
+.+++.|.+.+ +|++++.|+|++..+. +....++++|+. +|+||+++|+|||++++.| |+||+++|||||+|++
T Consensus 2 ~~~~~~l~~~l-~d~~vv~d~G~~~~~~-~~~~~~~~~~~~---~gsmG~~lp~AiGa~~a~~-~~Vv~i~GDG~f~m~~ 75 (157)
T cd02001 2 IAAIAEIIEAS-GDTPIVSTTGYASREL-YDVQDRDGHFYM---LGSMGLAGSIGLGLALGLS-RKVIVVDGDGSLLMNP 75 (157)
T ss_pred HHHHHHHHHhC-CCCEEEeCCCHhHHHH-HHhhcCCCCEEe---ecchhhHHHHHHHHHhcCC-CcEEEEECchHHHhcc
Confidence 45789999999 7999999999987765 333334445764 9999999999999999986 9999999999999999
Q ss_pred HHHHHHHHh-CCCeEEEEEeCCchhhhhhhcCCCCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 474 QEISTMIRC-GQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 474 ~eL~ta~~~-~lpi~ivV~NN~~~g~~~~~~~~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+||+|++++ ++|+++||+||++|++... ......++||+++|++||++ +++|++++|+
T Consensus 76 ~el~t~~~~~~~~i~~vV~nN~~~g~~~~----~~~~~~~~d~~~lA~a~G~~-----~~~v~~~~el 134 (157)
T cd02001 76 GVLLTAGEFTPLNLILVVLDNRAYGSTGG----QPTPSSNVNLEAWAAACGYL-----VLSAPLLGGL 134 (157)
T ss_pred cHHHHHHHhcCCCEEEEEEeCccccccCC----cCCCCCCCCHHHHHHHCCCc-----eEEcCCHHHH
Confidence 999999999 5999999999999998221 11111368999999999997 5688887776
No 83
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.93 E-value=2e-25 Score=206.98 Aligned_cols=142 Identities=18% Similarity=0.149 Sum_probs=115.7
Q ss_pred CCCCcCHHHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcc
Q 009060 387 QNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGD 466 (545)
Q Consensus 387 ~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GD 466 (545)
.+..+....+++.|++.+|+|++++.|+|++..|... +.+++ .++|+||+++|+|+|+++++|+++||+++||
T Consensus 6 ~c~gc~~~~~~~~l~~~l~~~~iv~~D~G~~~~~~~~-----~~~~~--~~~g~mG~gl~~AiGa~la~p~~~Vv~i~GD 78 (178)
T cd02008 6 LCPGCPHRPSFYALRKAFKKDSIVSGDIGCYTLGALP-----PLNAI--DTCTCMGASIGVAIGMAKASEDKKVVAVIGD 78 (178)
T ss_pred cCCCCCChHHHHHHHHHhcCCeEEecCcCcccccccC-----Chhhc--cccccCccHHHHHhhHHhhCCCCCEEEEecC
Confidence 3456777889999999999999999999998776531 11132 3689999999999999999999999999999
Q ss_pred hhhccc-HHHHHHHHHhCCCeEEEEEeCCchhhhhhhc--CCC--C-CCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 467 GSFQVT-AQEISTMIRCGQRSIIFLINNGGYTIEVEIH--DGP--Y-NVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 467 Gsf~~~-~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~--~~~--~-~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
|+|+|+ ++||+|++++++|+++||+||++|++...+. ... + ...+++||+++|++||++ +++|.+.+|+
T Consensus 79 G~f~~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~~l 153 (178)
T cd02008 79 STFFHSGILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDIEALVRAIGVK-----RVVVVDPYDL 153 (178)
T ss_pred hHHhhccHHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCHHHHHHHCCCC-----EEEecCccCH
Confidence 999999 7999999999999999999999999822111 111 1 223568999999999996 5677776665
No 84
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.92 E-value=7.1e-26 Score=205.05 Aligned_cols=123 Identities=29% Similarity=0.443 Sum_probs=103.2
Q ss_pred cCCccccccc-cccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEE
Q 009060 413 ETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLI 491 (545)
Q Consensus 413 d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~ 491 (545)
|+|++..|.. ++...++.+++.+.++++||+++|+|+|+++++|+|+||+++|||+|+|+++||+|++|+++|+++||+
T Consensus 1 D~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~~~el~ta~~~~~~v~~vv~ 80 (153)
T PF02775_consen 1 DIGCHTMWAAQYLRVRRPRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMSLQELATAVRYGLPVVIVVL 80 (153)
T ss_dssp -SSHHHHHHHHHSCCSSTTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHHGGGHHHHHHTTSSEEEEEE
T ss_pred CcChhHHHHHHhcCcCCCCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeeccchhHHHhhccceEEEEEE
Confidence 6899988754 456677788999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCchhhhhhh----cCCCC--C---CCCCCCHHHHHHHcCCCCCceeEEEEeec--eee
Q 009060 492 NNGGYTIEVEI----HDGPY--N---VIKNWDYTGLVNAIHNGEGKCWTAKVSIY--KMC 540 (545)
Q Consensus 492 NN~~~g~~~~~----~~~~~--~---~l~~~d~~~lA~a~G~~~~~~~~~~v~~~--~~~ 540 (545)
||++|++.... ....+ . .++++||+++|++||++ +++|++. +|+
T Consensus 81 nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~~~el 135 (153)
T PF02775_consen 81 NNGGYGMTGGQQTPFGGGRFSGVDGKTFPNPDFAALAEAFGIK-----GARVTTPDPEEL 135 (153)
T ss_dssp ESSBSHHHHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHTTSE-----EEEESCHSHHHH
T ss_pred eCCcceEeccccccCcCcccccccccccccCCHHHHHHHcCCc-----EEEEccCCHHHH
Confidence 99999992221 12221 2 37899999999999996 5688777 665
No 85
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.92 E-value=2.8e-25 Score=205.52 Aligned_cols=133 Identities=21% Similarity=0.255 Sum_probs=107.0
Q ss_pred HHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccH
Q 009060 394 NVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTA 473 (545)
Q Consensus 394 ~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~ 473 (545)
..++++|++.+| +++++.|+|.+..+...+ ..++.+++. +|+||+++|+|+|+|+|+ +++||+++|||+|+|++
T Consensus 2 ~~~~~~l~~~l~-d~iiv~d~G~~~~~~~~~-~~~~~~~~~---~gsmG~~lpaAiGa~la~-~~~Vv~i~GDG~f~m~~ 75 (181)
T TIGR03846 2 IDAIRAIASYLE-DELVVSNIGVPSKELYAI-RDRPLNFYM---LGSMGLASSIGLGLALAT-DRTVIVIDGDGSLLMNL 75 (181)
T ss_pred HHHHHHHHHhCC-CCEEEecCCHhHHHHHhh-hcCCCCeee---ccccccHHHHHHHHHHcC-CCcEEEEEcchHHHhhh
Confidence 468899999998 999999999875422112 233444653 899999999999999999 99999999999999999
Q ss_pred HHHHHHHHhC-CCeEEEEEeCCchhhhhhhcCCCCCCCCCCCHHHHHHHcCCCCCceeEEE-Eeeceee
Q 009060 474 QEISTMIRCG-QRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAK-VSIYKMC 540 (545)
Q Consensus 474 ~eL~ta~~~~-lpi~ivV~NN~~~g~~~~~~~~~~~~l~~~d~~~lA~a~G~~~~~~~~~~-v~~~~~~ 540 (545)
+||+|+++++ +|+++||+||++|++...+ .....+++||+++|++||+++ .+ |++++++
T Consensus 76 ~el~ta~~~~~~pv~~vV~NN~~yg~~~~q---~~~~~~~~d~~~lA~a~G~~~-----~~~v~~~~~l 136 (181)
T TIGR03846 76 GVLPTIAAESPKNLILVILDNGAYGSTGNQ---PTPASRRTDLELVAKAAGIRN-----VEKVADEEEL 136 (181)
T ss_pred hHHHHHHHhCCCCeEEEEEeCCccccccCc---CCCCCCCCCHHHHHHHCCCCe-----EEEeCCHHHH
Confidence 9999999999 5999999999999983211 111125789999999999973 45 7777765
No 86
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.92 E-value=3.1e-25 Score=206.65 Aligned_cols=136 Identities=21% Similarity=0.216 Sum_probs=108.4
Q ss_pred HHHHHHHHhhCCCCCEEEecCCcccccccccc-cc---CCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhh
Q 009060 394 NVLFKHIQDMLSGDTAVIAETGDSWFNCQKLR-LP---ENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF 469 (545)
Q Consensus 394 ~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~-~~---~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf 469 (545)
..+++.|.+.+|+|++++.|.|.+......+. .+ .+.+++. .|+|||++|+|||++++.|+++||+++|||+|
T Consensus 2 ~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~---~g~mG~~lpaAiGaala~p~~~Vv~i~GDG~f 78 (188)
T cd03371 2 EDAIEIVLSRAPATAAVVSTTGMTSRELFELRDRPGGGHAQDFLT---VGSMGHASQIALGIALARPDRKVVCIDGDGAA 78 (188)
T ss_pred HHHHHHHHhhcCCCCEEEECCCcchHHHHHhhcCCCCCccCceee---cCccccHHHHHHHHHHhCCCCcEEEEeCCcHH
Confidence 35789999999999999999998664222222 11 1244654 39999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCC-CeEEEEEeCCchhhhhhhcCCCCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 470 QVTAQEISTMIRCGQ-RSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 470 ~~~~~eL~ta~~~~l-pi~ivV~NN~~~g~~~~~~~~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+|+++||+|++++++ |+++||+||++|++.. .......++||+++|++||+++ .++|++++|+
T Consensus 79 ~m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~----~~~~~~~~~d~~~~A~a~G~~~----~~~v~~~~el 142 (188)
T cd03371 79 LMHMGGLATIGGLAPANLIHIVLNNGAHDSVG----GQPTVSFDVSLPAIAKACGYRA----VYEVPSLEEL 142 (188)
T ss_pred HhhccHHHHHHHcCCCCcEEEEEeCchhhccC----CcCCCCCCCCHHHHHHHcCCce----EEecCCHHHH
Confidence 999999999999997 7999999999999821 1112224689999999999973 3467777765
No 87
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=99.92 E-value=1.4e-24 Score=192.84 Aligned_cols=132 Identities=33% Similarity=0.578 Sum_probs=114.6
Q ss_pred HHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCC
Q 009060 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESAD 304 (545)
Q Consensus 225 i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD 304 (545)
|++++++|.+||||+|++|.|+.++++.+++++|+|++|+||++|+++||+||++||+|+| +.|..+++.+++++++||
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G-~~g~~~~~~~~~~l~~aD 79 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLG-YLGLFGSPAANEALEQAD 79 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEE-ESCGGSCHHHHHHHHHSS
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcc-cCCccCCHHHHHHhcCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999 468888999999999999
Q ss_pred EEEEeCCCCCCCccccc-ccCCCCCcEEEEcCCcceecCCCcccc----ccHHHHHHHH
Q 009060 305 AYVFVGPIFNDYSSVGY-SLLIKKEKAIIVQPHRVTVGNGPSLGW----VFMADFLSAL 358 (545)
Q Consensus 305 ~vl~lG~~~~~~~~~~~-~~~~~~~~~i~id~d~~~~~~~~~~~~----~d~~~~l~~L 358 (545)
+||++|++++++.+.++ ..+.++.++||||.|+.+++ +.+..+ .|++.+|++|
T Consensus 80 lvl~iG~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~-~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 80 LVLAIGTRLSDFNTYGFSPAFNPDAKIIQIDPDPAEIG-KNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp EEEEESSSSSTTTTTTTTGCSTTTSEEEEEESSGGGTT-SSSEESEEEESHHHHHHHHH
T ss_pred EEEEECCCCccccccccccccCCCCEEEEEECCHHHhC-CCCCCCEEEEECHHHHhhCC
Confidence 99999999998777653 33445559999999999997 444333 3889999886
No 88
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.90 E-value=6.7e-24 Score=196.36 Aligned_cols=133 Identities=21% Similarity=0.230 Sum_probs=106.9
Q ss_pred HHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccH
Q 009060 394 NVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTA 473 (545)
Q Consensus 394 ~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~ 473 (545)
+.+++.|++.+| |+++++|+|++..+...+. ..+.+++ .+|+||+++|+|+|++++.| ++||+++|||+|+|+.
T Consensus 2 ~~~~~~l~~~~~-~~~vv~d~G~~~~~~~~~~-~~~~~~~---~~g~mG~~lp~AiGaala~~-~~vv~i~GDG~f~m~~ 75 (179)
T cd03372 2 RDAIKTLIADLK-DELVVSNIGFPSKELYAAG-DRPLNFY---MLGSMGLASSIGLGLALAQP-RKVIVIDGDGSLLMNL 75 (179)
T ss_pred HHHHHHHHHhCC-CCeEEeCCCHhHHHHHHcc-Ccccccc---cccchhhHHHHHHHHHhcCC-CcEEEEECCcHHHhCH
Confidence 468899999999 9999999999865533332 2233354 28999999999999999988 9999999999999999
Q ss_pred HHHHHHHHhCC-CeEEEEEeCCchhhhhhhcCCCCCCCCCCCHHHHHHHcCCCCCceeEEEEe-eceee
Q 009060 474 QEISTMIRCGQ-RSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVS-IYKMC 540 (545)
Q Consensus 474 ~eL~ta~~~~l-pi~ivV~NN~~~g~~~~~~~~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~-~~~~~ 540 (545)
+||+|++++++ |+++||+||++|++... ......+++||.++|++||++ +.+|+ +++|+
T Consensus 76 ~el~ta~~~~~~~l~vvV~NN~~~~~~~~---~~~~~~~~~d~~~lA~a~G~~-----~~~v~~~~~el 136 (179)
T cd03372 76 GALATIAAEKPKNLIIVVLDNGAYGSTGN---QPTHAGKKTDLEAVAKACGLD-----NVATVASEEAF 136 (179)
T ss_pred HHHHHHHHcCCCCEEEEEEcCccccccCC---CCCCCCCCCCHHHHHHHcCCC-----eEEecCCHHHH
Confidence 99999999995 79999999999998211 111122478999999999997 45666 66665
No 89
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.90 E-value=4.3e-24 Score=205.55 Aligned_cols=149 Identities=19% Similarity=0.096 Sum_probs=116.8
Q ss_pred CCCcCHHHHHHHHHhhCCCCCEEEecCCcccccccc-----ccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEE
Q 009060 388 NEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQK-----LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIA 462 (545)
Q Consensus 388 ~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~-----~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~ 462 (545)
+..+....+++.|++.+|+|.+++.|+|++..|..+ +..+....++. ..++||+++|+|||+++++|+|+||+
T Consensus 8 C~gC~~~~~~~~l~~~lp~d~iiv~D~G~~~~~~~~~~~~~~~~~~~~~~~~--~~gsmG~GlpaAiGa~~a~p~r~VV~ 85 (235)
T cd03376 8 CAGCGAALALRHVLKALGPDTVVVNPTGCLEVITTPYPYTAWRVPWIHVAFE--NAAAVASGIEAALKALGRGKDITVVA 85 (235)
T ss_pred CCCCccHHHHHHHHHHhhcCeEEEeCCCcccccCCcCCCccccccceehhhc--CHHHHHHHHHHHHHHhccCCCCeEEE
Confidence 456788899999999999999999999999764332 23333333443 34799999999999999999999999
Q ss_pred EEcchhh-cccHHHHHHHHHhCCCeEEEEEeCCchhh---hhhhc---CCC-----C-C-----CCCCCCHHHHHHHcCC
Q 009060 463 CIGDGSF-QVTAQEISTMIRCGQRSIIFLINNGGYTI---EVEIH---DGP-----Y-N-----VIKNWDYTGLVNAIHN 524 (545)
Q Consensus 463 i~GDGsf-~~~~~eL~ta~~~~lpi~ivV~NN~~~g~---~~~~~---~~~-----~-~-----~l~~~d~~~lA~a~G~ 524 (545)
++|||+| +|+++||+|++++++|+++||+||+.|++ ++... ... + . ..+.+||.++|++||+
T Consensus 86 i~GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~ 165 (235)
T cd03376 86 FAGDGGTADIGFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNI 165 (235)
T ss_pred EEcCchHHhhHHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHHHHHHcCC
Confidence 9999995 89999999999999999999999999997 22211 111 1 1 2356899999999999
Q ss_pred CCCceeEEEEeeceee
Q 009060 525 GEGKCWTAKVSIYKMC 540 (545)
Q Consensus 525 ~~~~~~~~~v~~~~~~ 540 (545)
++. ...+|++++|+
T Consensus 166 ~~~--~~~~v~~~~el 179 (235)
T cd03376 166 PYV--ATASVAYPEDL 179 (235)
T ss_pred cEE--EEEcCCCHHHH
Confidence 742 23467777776
No 90
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.90 E-value=6.3e-24 Score=198.99 Aligned_cols=136 Identities=17% Similarity=0.071 Sum_probs=101.3
Q ss_pred HHHHHHHh--hCCCCCEEEecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchh-hcc
Q 009060 395 VLFKHIQD--MLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGS-FQV 471 (545)
Q Consensus 395 ~~~~~l~~--~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGs-f~~ 471 (545)
.+.+++.+ ..|+|++++.|+|++.+...++.. +..+++||+++|+|+|+++++|+|+||+++|||| |+|
T Consensus 13 ~~~~~~~~~~~~~~d~ii~~D~G~~~~~~~~~~~--------~~~~g~mG~glpaAiGa~la~p~r~Vv~i~GDGs~f~m 84 (193)
T cd03375 13 ALAKALAELGIDPEKVVVVSGIGCSSRLPYYFNT--------YGFHTLHGRALAVATGVKLANPDLTVIVVSGDGDLAAI 84 (193)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCChhceehhhccc--------cchhhhhccHHHHHHHHHHhCCCCeEEEEeccchHhhc
Confidence 34444433 246789999999997533222221 2234899999999999999999999999999999 579
Q ss_pred cHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc-----CCC------CCC-CCCCCHHHHHHHcCCCCCceeEEEEeecee
Q 009060 472 TAQEISTMIRCGQRSIIFLINNGGYTIEVEIH-----DGP------YNV-IKNWDYTGLVNAIHNGEGKCWTAKVSIYKM 539 (545)
Q Consensus 472 ~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~-----~~~------~~~-l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~ 539 (545)
+++||+|++|+++|+++||+||++|++.+.+. .+. +.. .+.+||.++|++||+++. ...+|++++|
T Consensus 85 ~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~--~~~~v~~~~e 162 (193)
T cd03375 85 GGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFV--ARGFSGDIKQ 162 (193)
T ss_pred cHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEE--EEEecCCHHH
Confidence 99999999999999999999999999822111 111 111 245899999999999741 1246777776
Q ss_pred e
Q 009060 540 C 540 (545)
Q Consensus 540 ~ 540 (545)
+
T Consensus 163 l 163 (193)
T cd03375 163 L 163 (193)
T ss_pred H
Confidence 5
No 91
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.90 E-value=1.1e-23 Score=193.94 Aligned_cols=140 Identities=27% Similarity=0.428 Sum_probs=117.6
Q ss_pred HHHHHHhhCCCCCEEEecCCcccccccc-ccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHH
Q 009060 396 LFKHIQDMLSGDTAVIAETGDSWFNCQK-LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQ 474 (545)
Q Consensus 396 ~~~~l~~~l~~~~ivv~d~G~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~ 474 (545)
+++.|.+.++++++++.|+|++..+... +....+.++..+.++|+||+++|+|+|++++.|+++|++++|||+|+|+.+
T Consensus 2 ~~~~l~~~~~~~~~i~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~~a~Gaa~a~~~~~vv~~~GDG~~~~~~~ 81 (168)
T cd00568 2 VLAALRAALPEDAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAALAAPDRPVVCIAGDGGFMMTGQ 81 (168)
T ss_pred HHHHHHHHCCCCCEEEeCCcHHHHHHHHheeeCCCCcEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcCcHHhccHH
Confidence 6788999999999999999998776543 344455568888899999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEeCCchhhhhhh----cCC--CCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 475 EISTMIRCGQRSIIFLINNGGYTIEVEI----HDG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 475 eL~ta~~~~lpi~ivV~NN~~~g~~~~~----~~~--~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
||+|++++++|+++||+||++|++.... +.. .+...+.+||.++|++||++ +.+|++++++
T Consensus 82 ~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~-----~~~v~~~~~l 148 (168)
T cd00568 82 ELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAK-----GVRVEDPEDL 148 (168)
T ss_pred HHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCe-----EEEECCHHHH
Confidence 9999999999999999999999982211 111 23455789999999999996 5677777665
No 92
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.90 E-value=1.4e-23 Score=202.47 Aligned_cols=151 Identities=14% Similarity=0.047 Sum_probs=117.9
Q ss_pred CCCcCHHHHHHHHHhhCC--CCCEEEecCCccccccccc-cccCCCeeEecc--CccccchhHHHHHHhhhh-----cCC
Q 009060 388 NEPLRVNVLFKHIQDMLS--GDTAVIAETGDSWFNCQKL-RLPENCGYEFQM--QYGSIGWSVGATLGYAQA-----AKD 457 (545)
Q Consensus 388 ~~~~~~~~~~~~l~~~l~--~~~ivv~d~G~~~~~~~~~-~~~~~~~~~~~~--~~g~mG~~l~aAiGaala-----~p~ 457 (545)
+..+...-+++.|.+.++ ++.+++.|+|++..|...+ ..+.+..+..+. +.|+||+++|+|||++++ .|+
T Consensus 8 c~gc~~~~~~~~l~~~l~~p~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~ 87 (237)
T cd02018 8 CAGCGEVTAVRVVLAALPAPEDTVIANSTGCSSVYASTAPFNSWAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKK 87 (237)
T ss_pred CcCCCcHHHHHHHHHHhCCCCCEEEEeCCCccceecccCcCcccCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCC
Confidence 445777889999999999 9999999999998776443 222222344433 559999999999999999 999
Q ss_pred CeEEEEEcchhhc-ccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc-----CC------CC-CCCCCCCHHHHHHHcCC
Q 009060 458 KRVIACIGDGSFQ-VTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH-----DG------PY-NVIKNWDYTGLVNAIHN 524 (545)
Q Consensus 458 r~vv~i~GDGsf~-~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~-----~~------~~-~~l~~~d~~~lA~a~G~ 524 (545)
|+||+++|||+|+ |++++|+|++++++|+++||+||+.|++...+. .+ .. .+++++||+++|++||+
T Consensus 88 ~~Vv~i~GDG~~~~~g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~ 167 (237)
T cd02018 88 KDVVVIGGDGATYDIGFGALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGC 167 (237)
T ss_pred CcEEEEeCchHHHhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCC
Confidence 9999999999998 899999999999999999999999999822111 11 11 24577999999999999
Q ss_pred CCCceeEEEEeeceee
Q 009060 525 GEGKCWTAKVSIYKMC 540 (545)
Q Consensus 525 ~~~~~~~~~v~~~~~~ 540 (545)
++. ...+|++++++
T Consensus 168 ~~~--~~~~v~~~~~l 181 (237)
T cd02018 168 VYV--ARLSPALKKHF 181 (237)
T ss_pred CEE--EEEccCCHHHH
Confidence 732 22247776665
No 93
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.87 E-value=4e-22 Score=195.00 Aligned_cols=142 Identities=20% Similarity=0.126 Sum_probs=109.7
Q ss_pred CCcCHHHHHHHHHhh--CCCCCEEEecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcc
Q 009060 389 EPLRVNVLFKHIQDM--LSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGD 466 (545)
Q Consensus 389 ~~~~~~~~~~~l~~~--l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GD 466 (545)
..+.+..++++|++. ++++.++++|+|++.++..++. . ....++||+++|+|+|+|+|+|+++||+++||
T Consensus 24 ~~i~~~~v~~al~e~~~~~~d~ivvsdiGc~~~~~~~~~---~-----~~~~~~~G~alPaAiGaklA~Pdr~VV~i~GD 95 (277)
T PRK09628 24 DGVILKSIIRAIDKLGWNMDDVCVVSGIGCSGRFSSYVN---C-----NTVHTTHGRAVAYATGIKLANPDKHVIVVSGD 95 (277)
T ss_pred CchHHHHHHHHHHHhcCCCCCEEEEeCcCHHHHhhccCC---C-----CceeeccccHHHHHHHHHHHCCCCeEEEEECc
Confidence 347789999999998 5889999999999865433221 1 11235899999999999999999999999999
Q ss_pred hhhcc-cHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc-----CC------CCCC-CCCCCHHHHHHHcCCCCCceeEEE
Q 009060 467 GSFQV-TAQEISTMIRCGQRSIIFLINNGGYTIEVEIH-----DG------PYNV-IKNWDYTGLVNAIHNGEGKCWTAK 533 (545)
Q Consensus 467 Gsf~~-~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~-----~~------~~~~-l~~~d~~~lA~a~G~~~~~~~~~~ 533 (545)
|+|+| ..+|+.|++|+++|+++||+||+.||+...+. .+ ++.. .+++||.++|++||+++. -+.+
T Consensus 96 G~f~~~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~v--a~~~ 173 (277)
T PRK09628 96 GDGLAIGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFV--ARES 173 (277)
T ss_pred hHHHHhhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceE--EEEc
Confidence 99975 78999999999999999999999999922111 11 1222 256799999999999731 1246
Q ss_pred Eeeceee
Q 009060 534 VSIYKMC 540 (545)
Q Consensus 534 v~~~~~~ 540 (545)
|.+.+++
T Consensus 174 v~~~~el 180 (277)
T PRK09628 174 VIDPQKL 180 (277)
T ss_pred cCCHHHH
Confidence 7777665
No 94
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.86 E-value=1.1e-21 Score=193.29 Aligned_cols=130 Identities=19% Similarity=0.179 Sum_probs=106.7
Q ss_pred CCCCcCHHHHHHHHHhhC------CCCCEEEecCCccccccccccccCCCeeEeccCc-cccchhHHHHHHhhhhcCCCe
Q 009060 387 QNEPLRVNVLFKHIQDML------SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQY-GSIGWSVGATLGYAQAAKDKR 459 (545)
Q Consensus 387 ~~~~~~~~~~~~~l~~~l------~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~l~aAiGaala~p~r~ 459 (545)
-+..+....+++.|.+.+ |++.++++|+|++.++.. ++.+.++ |+||+++|+|+|+|+|+|+++
T Consensus 19 ~CpGCg~~~il~~l~~al~~l~~~p~d~vvvsdiGc~~~~~~---------~~~~~~~~g~mG~alpaAiGaklA~Pd~~ 89 (286)
T PRK11867 19 WCPGCGDGSILAALQRALAELGLDPENVAVVSGIGCSGRLPG---------YINTYGFHTIHGRALAIATGLKLANPDLT 89 (286)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEeCCccccccCc---------cccccchhhhhhcHHHHHHHHHHhCCCCc
Confidence 455677788999999999 789999999999976542 3334455 899999999999999999999
Q ss_pred EEEEEcchh-hcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc-C-----C-----CCCCC-CCCCHHHHHHHcCCC
Q 009060 460 VIACIGDGS-FQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH-D-----G-----PYNVI-KNWDYTGLVNAIHNG 525 (545)
Q Consensus 460 vv~i~GDGs-f~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~-~-----~-----~~~~l-~~~d~~~lA~a~G~~ 525 (545)
||+++|||+ |+|+++||+|++|+|+|+++||+||++||+...+. . . ++... +++||.++|+++|+.
T Consensus 90 VV~i~GDG~~f~mg~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~ 168 (286)
T PRK11867 90 VIVVTGDGDALAIGGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGAT 168 (286)
T ss_pred EEEEeCccHHHhCCHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCc
Confidence 999999995 99999999999999999999999999999922211 1 1 11122 458999999999996
No 95
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.86 E-value=1.5e-21 Score=193.01 Aligned_cols=140 Identities=19% Similarity=0.137 Sum_probs=106.8
Q ss_pred cCHHHHHHHHHhh-C-CCCCEEEecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchh
Q 009060 391 LRVNVLFKHIQDM-L-SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGS 468 (545)
Q Consensus 391 ~~~~~~~~~l~~~-l-~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGs 468 (545)
+-...++++|.+. + |++.++++|+|++.++..++. .+...|.||+++|+|+|+|+|+|+++||+++|||+
T Consensus 28 ~i~~~i~~al~~l~l~p~d~vivsdiG~s~~~~~yl~--------~~~~~g~mG~alpaAiGaklA~pd~~VV~i~GDG~ 99 (301)
T PRK05778 28 GILNAIIQALAELGLDPDKVVVVSGIGCSSKIPGYFL--------SHGLHTLHGRAIAFATGAKLANPDLEVIVVGGDGD 99 (301)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCcHhhhhhhhcc--------cCccchhhccHHHHHHHHHHHCCCCcEEEEeCccH
Confidence 3456777888876 4 788999999999875443222 12233899999999999999999999999999999
Q ss_pred h-cccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc-----CC------CC-CCCCCCCHHHHHHHcCCCCCceeEEEEe
Q 009060 469 F-QVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH-----DG------PY-NVIKNWDYTGLVNAIHNGEGKCWTAKVS 535 (545)
Q Consensus 469 f-~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~-----~~------~~-~~l~~~d~~~lA~a~G~~~~~~~~~~v~ 535 (545)
| +|+++||+|++|+|+|+++||+||++||+...+. .+ ++ ...+++||.++|+++|+.+. -..++.
T Consensus 100 ~~~mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~v--a~~~v~ 177 (301)
T PRK05778 100 LASIGGGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFV--ARSFAG 177 (301)
T ss_pred HHhccHHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEE--EEeccC
Confidence 8 5999999999999999999999999999822111 11 11 12357899999999999731 112566
Q ss_pred eceee
Q 009060 536 IYKMC 540 (545)
Q Consensus 536 ~~~~~ 540 (545)
+.+++
T Consensus 178 ~~~eL 182 (301)
T PRK05778 178 DVKQL 182 (301)
T ss_pred CHHHH
Confidence 66654
No 96
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.84 E-value=1.1e-20 Score=184.45 Aligned_cols=131 Identities=14% Similarity=0.122 Sum_probs=99.3
Q ss_pred CCCcCHHHHHHHHHhh------CCCCCEEEecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEE
Q 009060 388 NEPLRVNVLFKHIQDM------LSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVI 461 (545)
Q Consensus 388 ~~~~~~~~~~~~l~~~------l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv 461 (545)
+..+....++..+.+. +|+|.+++.|+|++..+..++.. ....+.||+++|+|+|+++|+|+++||
T Consensus 11 CpGCg~~~i~~~~~~a~~~l~~~p~d~ivvsdiG~~~~~~~~~~~--------~~~~~~mG~alp~AiGaklA~pd~~VV 82 (280)
T PRK11869 11 CPGCGNFGIRNALMKALSELNLKPRQVVIVSGIGQAAKMPHYINV--------NGFHTLHGRAIPAATAVKATNPELTVI 82 (280)
T ss_pred CcCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCchHhhhHHHHccC--------CCCCcccccHHHHHHHHHHHCCCCcEE
Confidence 3345555455544443 46789999999998775333221 134477999999999999999999999
Q ss_pred EEEcchhhccc-HHHHHHHHHhCCCeEEEEEeCCchhhhhhhc-----CC------CCC-CCCCCCHHHHHHHcCCCC
Q 009060 462 ACIGDGSFQVT-AQEISTMIRCGQRSIIFLINNGGYTIEVEIH-----DG------PYN-VIKNWDYTGLVNAIHNGE 526 (545)
Q Consensus 462 ~i~GDGsf~~~-~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~-----~~------~~~-~l~~~d~~~lA~a~G~~~ 526 (545)
+++|||+|+|. +|||+|++|+|+|+++||+||++||+-..+. .+ ++. ...++||.++|+++|+++
T Consensus 83 ai~GDG~~~~iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~ 160 (280)
T PRK11869 83 AEGGDGDMYAEGGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASF 160 (280)
T ss_pred EEECchHHhhCcHHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCE
Confidence 99999999976 9999999999999999999999999821111 00 112 225689999999999973
No 97
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.83 E-value=4.2e-20 Score=180.50 Aligned_cols=133 Identities=16% Similarity=0.071 Sum_probs=104.9
Q ss_pred CCCCCcCHHHHHHHHHhhC------CCCCEEEecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCe
Q 009060 386 AQNEPLRVNVLFKHIQDML------SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKR 459 (545)
Q Consensus 386 ~~~~~~~~~~~~~~l~~~l------~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~ 459 (545)
..+..+....++..|++.+ |++.++++|+|++.+...++.. ....+.||+++|+|+|+++|+|+++
T Consensus 8 ~~CpGCg~~~il~al~~al~~l~~~~~~~ivvsdiGc~~~~~~~~~~--------~~~~~~~G~alp~A~GaklA~Pd~~ 79 (279)
T PRK11866 8 IWCPGCGNYGILEALRKALAELGIPPENVVVVSGIGCSSNLPEFLNT--------YGIHGIHGRVLPIATGVKWANPKLT 79 (279)
T ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCCCEEEEECCchhhhhhhhccC--------CCcccccccHHHHHHHHHHHCCCCc
Confidence 3455677777888888877 7888999999999743333221 2236899999999999999999999
Q ss_pred EEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc----C--CCC--CC---C-CCCCHHHHHHHcCCCC
Q 009060 460 VIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH----D--GPY--NV---I-KNWDYTGLVNAIHNGE 526 (545)
Q Consensus 460 vv~i~GDG-sf~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~----~--~~~--~~---l-~~~d~~~lA~a~G~~~ 526 (545)
||+++||| +|+|+++||.|++|+|+|+++||+||+.||+-..+. . ... +. . +..||.++|+++|+.+
T Consensus 80 VV~i~GDG~~f~ig~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~ 159 (279)
T PRK11866 80 VIGYGGDGDGYGIGLGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATF 159 (279)
T ss_pred EEEEECChHHHHccHHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCE
Confidence 99999999 799999999999999999999999999999922111 1 111 11 1 2359999999999973
No 98
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.81 E-value=9.4e-20 Score=178.51 Aligned_cols=86 Identities=19% Similarity=0.193 Sum_probs=75.4
Q ss_pred CCCCCEEEecCCccccccccccccCCCeeEeccCc-cccchhHHHHHHhhhhcCCCeEEEEEcchhhc-ccHHHHHHHHH
Q 009060 404 LSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQY-GSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ-VTAQEISTMIR 481 (545)
Q Consensus 404 l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~-~~~~eL~ta~~ 481 (545)
.|+|.++++|+|++.... .++...++ +.||+++|+|+|+|+|+|+++||+++|||+|+ |+++||+|++|
T Consensus 26 ~p~d~iivsdiGc~~~~~---------~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai~GDG~f~~mg~~eL~tA~r 96 (287)
T TIGR02177 26 DPEQVVVVSGIGCSAKTP---------HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVVGGDGDLYGIGGNHFVAAGR 96 (287)
T ss_pred CCCCEEEEECCCcccccC---------CeEecCCcccccccHHHHHHHHHHHCCCCcEEEEeCchHHHhccHHHHHHHHH
Confidence 367899999999986321 24445555 55899999999999999999999999999986 99999999999
Q ss_pred hCCCeEEEEEeCCchhh
Q 009060 482 CGQRSIIFLINNGGYTI 498 (545)
Q Consensus 482 ~~lpi~ivV~NN~~~g~ 498 (545)
+|+||++||+||+.||+
T Consensus 97 ~nl~I~vIVlNN~~yGm 113 (287)
T TIGR02177 97 RNVDITVIVHDNQVYGL 113 (287)
T ss_pred hCcCeEEEEEECHHHHh
Confidence 99999999999999999
No 99
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.77 E-value=1.1e-16 Score=166.44 Aligned_cols=454 Identities=16% Similarity=0.122 Sum_probs=261.9
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCC----CCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcch
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP----ELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGG 101 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~----~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~ 101 (545)
+-+-++|++.+-+.||.++-|+||+.+.+|.+.|.+.. ++.+-+..||..|.-+|.| |...| .+++. -.++|+
T Consensus 16 llGneAi~r~Ale~gV~~~aGYpGtPstei~e~la~~~~~l~~vy~e~s~NEkvA~e~a~G-A~~~G~ral~~-mKhVGl 93 (640)
T COG4231 16 LLGNEAIARGALEAGVGVAAGYPGTPSTELIETLAKAKKILGDVYFEWSLNEKVALETAAG-ASYAGVRALVT-MKHVGL 93 (640)
T ss_pred hccHHHHHHHHHhcCceEEeccCCCCcHHHHHHHHHhhhhcCcEEEEecccHHHHHHHHHH-hhhcCceeeEE-eccccc
Confidence 56789999999999999999999999999999997654 5788899999999999999 78888 66555 458998
Q ss_pred HHHHHHHHHhHhcCC--cEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHh
Q 009060 102 LSVLNAIAGAYSENL--PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTA 179 (545)
Q Consensus 102 ~n~~~~l~~A~~~~~--Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a 179 (545)
--+.-.+.++.+.++ -+|+|+||.|.... +++++| -...++.---+..+..+++++.+.+..||+.+
T Consensus 94 NvAsDpl~s~ay~Gv~GGlviv~aDDpg~~S--------Sqneqd---sr~y~~~a~iPvLeP~d~Qea~d~~~~afelS 162 (640)
T COG4231 94 NVASDPLMSLAYAGVTGGLVIVVADDPGMHS--------SQNEQD---SRAYGKFALIPVLEPSDPQEAYDYVKYAFELS 162 (640)
T ss_pred ccchhhhhhhhhcCccccEEEEEccCCCccc--------ccchhH---hHHHHHhcCceeecCCChHHHHHHHHHHHHHH
Confidence 778889999888777 49999999887732 333322 23333444456788889999999999999999
Q ss_pred hhCCCcEEEEeCCCCCCCCCCCCCC-------CCC--C-------cccCCCCC-C--chhhHHHHHHHHHHHHhcC----
Q 009060 180 LKESKPVYISISCNLPGIPHPTFAR-------DPV--P-------FFLAPKVS-N--QLGLEAAVEATADFLNKAV---- 236 (545)
Q Consensus 180 ~~~~GPV~l~iP~dv~~~~~~~~~~-------~~~--~-------~~~~~~~~-~--~~~~~~~i~~~~~~l~~a~---- 236 (545)
..-.-||-|..-.++.+....+... .+. . ....|... . ..-....+.++.+.+++.+
T Consensus 163 e~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v 242 (640)
T COG4231 163 EKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRYVRVPANALRHRHRKLLEKWEAAEEFINANPLNRV 242 (640)
T ss_pred HHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccceeecCcccchhhHHHHHHHHHHHHHHHhhCccccc
Confidence 8778899999888876542211100 000 0 00000000 0 0001111222333332211
Q ss_pred ------CCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeC
Q 009060 237 ------KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVG 310 (545)
Q Consensus 237 ------rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG 310 (545)
+--|++. |. +-.-+++-.+.+|+-.--- .+..-||+- ......+++.-+-||++-
T Consensus 243 ~~~~~~~lGII~~-G~----ay~yVkeAl~~lgl~~~~l-----klg~~~Plp---------~~~i~~F~~g~~~vlVVE 303 (640)
T COG4231 243 EGSDDAKLGIIAS-GI----AYNYVKEALEDLGLDDELL-----KLGTPYPLP---------EQLIENFLKGLERVLVVE 303 (640)
T ss_pred ccCCCCceEEEec-Cc----cHHHHHHHHHHcCCCceeE-----EecCCcCCC---------HHHHHHHHhcCcEEEEEe
Confidence 1101111 11 2223333333333322100 000112221 112333444445555553
Q ss_pred CCCCCCcccccccCC-CCCcEEEEcCCcceecCCCccccccHHHHHHHHHHHhccCch-hhhh----hhhhcCCCCCCCc
Q 009060 311 PIFNDYSSVGYSLLI-KKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTT-ALEN----YRRIYVPPGIPVK 384 (545)
Q Consensus 311 ~~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~~~~~~~~~d~~~~l~~L~~~l~~~~~-~~~~----~~~~~~~~~~~~~ 384 (545)
..-+ +...+..... +...- ++....+-+--....+.+++.+..+|...+..... .+.. .++.. ....+.+
T Consensus 304 E~~P-~iE~qv~~~l~~~g~~--v~v~GKd~gllP~~GElt~~~i~~ai~~~l~~~~~~s~~~~~~~~~~~~-~~~~~Rp 379 (640)
T COG4231 304 EGEP-FIEEQVKALLYDAGLP--VEVHGKDEGLLPMEGELTPEKIANAIAKFLGKEGSPSYESIVAEVRKAA-VLIPPRP 379 (640)
T ss_pred cCCc-hHHHHHHHHHHhcCCc--eEeecccccccCcccccCHHHHHHHHHHHhCccCCcccccchhhhhccc-ccCCCCC
Confidence 2211 0000000000 00000 00000000000112345778888888887765321 1111 01110 1111223
Q ss_pred CCCCCCcCHHHHHHHHHhhC---CCCCEEEecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEE
Q 009060 385 RAQNEPLRVNVLFKHIQDML---SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVI 461 (545)
Q Consensus 385 ~~~~~~~~~~~~~~~l~~~l---~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv 461 (545)
+.-+..+.+...+..++... .... -.|+|++.+..+ .+ +-.....-.||.+++.|=|+.++.+ +++|
T Consensus 380 P~lC~GCPHr~sf~~~k~~~~~~~~~~--~~DIGCytlg~~-----~P--~~~~d~t~~mGssig~a~g~~~~~~-k~~v 449 (640)
T COG4231 380 PALCPGCPHRPSFYALKKAAAELGGHP--SGDIGCYTLGIL-----PP--LNTVDTTTMMGSSIGIAGGLSFAST-KKIV 449 (640)
T ss_pred CcCCCCCCCchhhHHHHHHHHhhCCCC--CCCcceeecccC-----CC--cchhhhhhhccchhhhccccccccC-CceE
Confidence 33344455555555555443 2222 568899877543 12 1122234568888888888887765 8999
Q ss_pred EEEcchhhccc-HHHHHHHHHhCCCeEEEEEeCCchhh-hhhhcCCC-----CCCCCCCCHHHHHHHcCCCC
Q 009060 462 ACIGDGSFQVT-AQEISTMIRCGQRSIIFLINNGGYTI-EVEIHDGP-----YNVIKNWDYTGLVNAIHNGE 526 (545)
Q Consensus 462 ~i~GDGsf~~~-~~eL~ta~~~~lpi~ivV~NN~~~g~-~~~~~~~~-----~~~l~~~d~~~lA~a~G~~~ 526 (545)
+++|||+|+|+ +..|..|+..+.|++++|++|..-+| ..+-+++. ...-..++.+++++++|+..
T Consensus 450 a~iGDsTF~HsGi~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~g~~~~~i~iee~~r~~Gv~~ 521 (640)
T COG4231 450 AVIGDSTFFHSGILALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVAAEGTKSTAIVIEEVVRAMGVED 521 (640)
T ss_pred EEeccccccccCcHHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcccccCCCccceeEhhHhhhhcCcee
Confidence 99999999997 78899999999999999999999998 21112221 12346789999999999974
No 100
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.77 E-value=1.3e-15 Score=172.94 Aligned_cols=464 Identities=14% Similarity=0.041 Sum_probs=278.3
Q ss_pred CCCccHHHHHHHHHHH-------cCC---CEEEecCCCChHHHHHhhhcCC------CCeEEecCchhHHHHHHhHHh--
Q 009060 24 ASVGTLGRHLARRLVE-------IGA---KDVFSVPGDFNLTLLDHLIAEP------ELNLVGCCNELNAGYAADGYA-- 85 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~-------~GV---~~vFg~pG~~~~~l~~al~~~~------~i~~i~~~hE~~A~~~A~gya-- 85 (545)
-.-++|.|+|++.+.+ .|+ ..|-|+||+++..+.+.|.+.. +|.+-+..||..|+-+|.|-+
T Consensus 17 ~~~l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~ 96 (1159)
T PRK13030 17 RIFLTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWKAKKLLDASDIRFLPGINEELAATAVLGTQQV 96 (1159)
T ss_pred CEeeeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHHhhhhhcccceEEeecCCHHHHHHHHHHhccc
Confidence 4569999999999999 999 9999999999999999997653 399999999999999999955
Q ss_pred ------hhcCceEEEEcCCcchHHHHHHHHHhHhcCC----cEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhc
Q 009060 86 ------RSRGVGACVVTFTVGGLSVLNAIAGAYSENL----PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAI 155 (545)
Q Consensus 86 ------r~tg~gv~~~t~GpG~~n~~~~l~~A~~~~~----Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 155 (545)
+..|.-.+..-.|||+--+.-++..+.+.++ -||+|+||.|..... +.++| .+...++..+
T Consensus 97 ~~~~~~~~~Gv~~l~~~K~~GvnvaaD~l~~~n~~G~~~~GG~v~v~gDDpg~~SS--------q~eqd-Sr~~~~~a~i 167 (1159)
T PRK13030 97 EADPERTVDGVFAMWYGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGCVSS--------SMPHQ-SDFALIAWHM 167 (1159)
T ss_pred cccCCccccceEEEEecCcCCcccchhHHHHHHhhcCCCCCcEEEEEecCCCCccC--------cCHHH-HHHHHHHcCC
Confidence 2556333444689999888899998777776 599999998876333 33223 2333344333
Q ss_pred eeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCCCCCCCCCCCCC-----CCC--cccCC------CCCCch---
Q 009060 156 TCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARD-----PVP--FFLAP------KVSNQL--- 219 (545)
Q Consensus 156 ~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv~~~~~~~~~~~-----~~~--~~~~~------~~~~~~--- 219 (545)
-...+.+++++.++...||..+....-||-+..-.++.+....+.... ..+ ...++ .+..+.
T Consensus 168 --Pvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~~~~~r~~~~p~~~~ 245 (1159)
T PRK13030 168 --PVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPPAGGLHNRWPDLPSLAI 245 (1159)
T ss_pred --ceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCCcccccccCCCCcHHHH
Confidence 347888999999999999999887778998888888765422211100 001 10111 000000
Q ss_pred --hhHHHHHHHHHHHHhcCCCEEEc-Cc----ccccc-chHHHHHHHHHHhCC-ceEeCCCCccCCCCCCCCccceecCC
Q 009060 220 --GLEAAVEATADFLNKAVKPVLVG-GP----NIRVA-KAQKAFIELADATGY-PIAIMPSGKGLVPEHHPHFIGTYWGA 290 (545)
Q Consensus 220 --~~~~~i~~~~~~l~~a~rpvi~~-G~----g~~~~-~a~~~l~~lae~~~~-Pv~tt~~~kg~~~~~hpl~~G~~~G~ 290 (545)
-....+..+.+.-...+-+-+.. +. |+..+ .+...+++-.+.+|+ ..-....+-.+ |-+|+.+ .
T Consensus 246 ~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lgiri------lKvgm~~-P 318 (1159)
T PRK13030 246 EARLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAGIRI------YKVGLSW-P 318 (1159)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccCccE------EEeCCcc-C
Confidence 01122333333222122222221 21 22222 244556666666666 22221122111 1233211 1
Q ss_pred CCCHHHHHHhhcCCEEEEeCCCCC--CCccc--ccccCC-CCCcEEEEc-CCcceecCCCccccccHHHHHHHHHHHhcc
Q 009060 291 VSSSFCGEIVESADAYVFVGPIFN--DYSSV--GYSLLI-KKEKAIIVQ-PHRVTVGNGPSLGWVFMADFLSALAKKLRK 364 (545)
Q Consensus 291 ~~~~~~~~~l~~aD~vl~lG~~~~--~~~~~--~~~~~~-~~~~~i~id-~d~~~~~~~~~~~~~d~~~~l~~L~~~l~~ 364 (545)
+......++++..|-||+|-..-+ +.... .+.... ...+++-.. .+...+ -....+.++..+...|...+..
T Consensus 319 L~~~~i~~F~~g~d~VlVVEE~~p~iE~Qlk~~l~~~~~~~~~~v~GK~~~~G~pl--lp~~gEl~~~~v~~~l~~~l~~ 396 (1159)
T PRK13030 319 LEPTRLREFADGLEEILVIEEKRPVIEQQIKDYLYNRPGGARPRVVGKHDEDGAPL--LSELGELRPSLIAPVLAARLAR 396 (1159)
T ss_pred CCHHHHHHHHhcCCEEEEEeCCchHHHHHHHHHHHhccccCCceeEEEECCCCCcC--CCCcCCcCHHHHHHHHHHHHhc
Confidence 223346788899999999975432 11111 011000 011232221 111101 1223455666666666555432
Q ss_pred Cch--hhh----hhhhh-c-C--CCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEe
Q 009060 365 NTT--ALE----NYRRI-Y-V--PPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEF 434 (545)
Q Consensus 365 ~~~--~~~----~~~~~-~-~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~ 434 (545)
... ... .+... . . ......++.-+..+.+...+ .++++.++..|+||+.+..+.+ +.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~P~~C~GCPH~~s~-----k~~~~~~~~gdIGC~tl~~~~~---~~----- 463 (1159)
T PRK13030 397 HKPALDRRARVVDLVAPQILSNEADAVVRTPYFCSGCPHNTST-----KVPEGSIAQAGIGCHFMASWMD---RD----- 463 (1159)
T ss_pred cCccchhhhccccccccccccccccCCCCCCCcCCCCCCchhh-----ccCCCCEeecCcCHHHHhhccc---cc-----
Confidence 111 100 11000 0 0 00111223334445555444 4567889999999998765421 11
Q ss_pred ccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhccc-HHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCC
Q 009060 435 QMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT-AQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNW 513 (545)
Q Consensus 435 ~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~-~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~~~~~~~l~~~ 513 (545)
...+-+||.+++.++|.+-...+++||+++|||.|+|+ +..|..++..+.|++++|++|+.-+| .+++-.. ..+
T Consensus 464 ~~~~~~MG~~g~~~~G~a~~~~~~~v~a~iGDgTf~HSG~~al~~AV~~~~nit~~IL~N~~tAM----TGgQp~~-g~i 538 (1159)
T PRK13030 464 TTGLTQMGGEGVDWIGHAPFTETKHVFQNLGDGTYFHSGSLAIRQAVAAGANITYKILYNDAVAM----TGGQPVD-GSI 538 (1159)
T ss_pred cceeeccCccchhhceeccccCCCCEEEEeccchhhhcCHHHHHHHHhcCCCeEEEEEeCCcccc----cCCCCCC-CCC
Confidence 22456799999999999887778899999999999997 88999999999999999999999999 3222111 146
Q ss_pred CHHH---HHHHcCCC
Q 009060 514 DYTG---LVNAIHNG 525 (545)
Q Consensus 514 d~~~---lA~a~G~~ 525 (545)
|..+ ++++.|++
T Consensus 539 ~v~~i~~~~~a~Gv~ 553 (1159)
T PRK13030 539 SVPQIARQVEAEGVS 553 (1159)
T ss_pred CHHHHHHHHHhCCCc
Confidence 7777 66799996
No 101
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=99.73 E-value=3.5e-15 Score=168.86 Aligned_cols=452 Identities=14% Similarity=0.031 Sum_probs=272.5
Q ss_pred CCCccHHHHHHHHHHH-------cCC---CEEEecCCCChHHHHHhhhcCC------CCeEEecCchhHHHHHHhHH---
Q 009060 24 ASVGTLGRHLARRLVE-------IGA---KDVFSVPGDFNLTLLDHLIAEP------ELNLVGCCNELNAGYAADGY--- 84 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~-------~GV---~~vFg~pG~~~~~l~~al~~~~------~i~~i~~~hE~~A~~~A~gy--- 84 (545)
..-++|.|+|++.+.+ .|+ .+|-|+||+++..+.+.|.+.. +|.+-+..||..|+-+|.|-
T Consensus 25 ~~~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsGYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ~~ 104 (1165)
T PRK09193 25 RVFLTGTQALVRLPLLQRERDRAAGLNTAGFVSGYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQQV 104 (1165)
T ss_pred CeeeeHHHHHHHHHHHHhhHHHhcCCCccceEEeeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhccc
Confidence 4568999999999998 999 9999999999999999987643 49999999999999999553
Q ss_pred -----hhhcCceEEEEcCCcchHHHHHHHHHhHhcCC----cEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhc
Q 009060 85 -----ARSRGVGACVVTFTVGGLSVLNAIAGAYSENL----PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAI 155 (545)
Q Consensus 85 -----ar~tg~gv~~~t~GpG~~n~~~~l~~A~~~~~----Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 155 (545)
++..|.-.+..-.|||+--+.-++..+.+.++ -||+|+||.+..... +.++| .+...++..+
T Consensus 105 ~~~~~a~~~Gv~~l~y~K~pGvn~aaD~l~~~n~~G~~~~GGvv~v~gDDpg~~SS--------q~eqd-Sr~~~~~a~i 175 (1165)
T PRK09193 105 NLFPGAKYDGVFGMWYGKGPGVDRSGDVFRHANAAGTSPHGGVLALAGDDHAAKSS--------TLPHQ-SEHAFKAAGM 175 (1165)
T ss_pred ccccceeeccceEEEecCcCCccccHhHHHHHHhhcCCCCCcEEEEEecCCCCccc--------cchhh-hHHHHHHcCC
Confidence 45556323444689998888899988777766 599999998876333 22233 2333333333
Q ss_pred eeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCCCCCCCCCCCCC-----CCC--cccCCC------CCCch---
Q 009060 156 TCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARD-----PVP--FFLAPK------VSNQL--- 219 (545)
Q Consensus 156 ~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv~~~~~~~~~~~-----~~~--~~~~~~------~~~~~--- 219 (545)
-...+.+++++.+....||..+....-||-+-.-.++.+....+.... ..+ ...++. +..+.
T Consensus 176 --Pvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~g~~~r~~~~p~~~~ 253 (1165)
T PRK09193 176 --PVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPEDFEMPPGGLNIRWPDPPLEQE 253 (1165)
T ss_pred --ceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcccccCCcccccccCCCCcHHHH
Confidence 336788899999999999999887778998888877755321111000 000 001110 00000
Q ss_pred --hhHHHHHHHHHHHHhcCCC----------EEEcCccccccchHHHHHHHHHHhCC----------ceEeCCCCccCCC
Q 009060 220 --GLEAAVEATADFLNKAVKP----------VLVGGPNIRVAKAQKAFIELADATGY----------PIAIMPSGKGLVP 277 (545)
Q Consensus 220 --~~~~~i~~~~~~l~~a~rp----------vi~~G~g~~~~~a~~~l~~lae~~~~----------Pv~tt~~~kg~~~ 277 (545)
-....+..+.+...+.+-- +-|+-.|. +...+++..+.+|+ +++
T Consensus 254 ~~~~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~----~y~~v~eal~~lg~~~~~~~~~gi~il---------- 319 (1165)
T PRK09193 254 ARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVAAGK----AYLDVRQALRDLGLDEETAARLGIRLY---------- 319 (1165)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCc----cHHHHHHHHHHcCCChhhhcccCCCEE----------
Confidence 0111233333322211111 22222233 33444444444444 443
Q ss_pred CCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCC--cccccccCCCCC--cEEEEcCCcc--eecCCCccccccH
Q 009060 278 EHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDY--SSVGYSLLIKKE--KAIIVQPHRV--TVGNGPSLGWVFM 351 (545)
Q Consensus 278 ~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~--~~~~~~~~~~~~--~~i~id~d~~--~~~~~~~~~~~d~ 351 (545)
-+|+.+ .+......++.+..|-||++-..-.-. ......+..+.. .-|.=-.|+. .+ -....+.++
T Consensus 320 -----Kvgm~~-PL~~~~i~~Fa~g~~~vlVVEE~~p~iE~qlk~~l~~~~~~~rp~v~GK~~~~g~~l--lp~~gEl~~ 391 (1165)
T PRK09193 320 -----KVGMVW-PLEPQGVRAFAEGLDEILVVEEKRQIIEYQLKEELYNWPDDVRPRVIGKFDPQGNWL--LPAHGELSP 391 (1165)
T ss_pred -----EeCCCC-CCCHHHHHHHHhcCCEEEEEecCchHHHHHHHHHHhhccCCcCceeEeeeCCCCCcc--CCCcCCcCH
Confidence 233211 122345678888999999997542211 111000000110 0121111111 01 122344566
Q ss_pred HHHHHHHHHHhccCc-----hh----hhhhhhhcC-----CCC-CCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCc
Q 009060 352 ADFLSALAKKLRKNT-----TA----LENYRRIYV-----PPG-IPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGD 416 (545)
Q Consensus 352 ~~~l~~L~~~l~~~~-----~~----~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~ 416 (545)
..+...|...+.... .. ...+..... +.. ...++.-+..+.+...+. +|++.++..|+||
T Consensus 392 ~~va~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~P~fCsGCPH~~st~-----vp~gs~~~~dIGC 466 (1165)
T PRK09193 392 AIIAKAIARRLLKLELPGDVRARIAARLAVLEAKEAALALPRVTAARTPYFCSGCPHNTSTR-----VPEGSRALAGIGC 466 (1165)
T ss_pred HHHHHHHHHHhhhcccccccchhhhhcccccccccccccccccCCCCCCCcCCCCCCcccee-----cCCCCEEecCcCh
Confidence 666666655443210 00 001100000 000 111222334455544433 4888999999999
Q ss_pred cccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhccc-HHHHHHHHHhCCCeEEEEEeCCc
Q 009060 417 SWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT-AQEISTMIRCGQRSIIFLINNGG 495 (545)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~-~~eL~ta~~~~lpi~ivV~NN~~ 495 (545)
+.+..+. |.. . .++-+||.+++.++|.+-...+++||+++|||.|+|+ +..|..++..+.|++++|++|+.
T Consensus 467 htl~~~~---p~~----~-~~~~~MG~eg~~~~G~a~f~~~~hv~a~iGDgTffHSG~~al~~AV~~~~nit~~IL~N~~ 538 (1165)
T PRK09193 467 HYMATWM---DRN----T-STFTQMGGEGVPWIGQAPFTDEKHVFQNLGDGTYFHSGLLAIRAAVAAGVNITYKILYNDA 538 (1165)
T ss_pred hhhccCC---CCC----C-CeeeccCCcchhhceeccccCCCcEEEEeccccchhcCHHHHHHHHhcCCCeEEEEEeCCc
Confidence 9875431 222 1 3567899999999998877778899999999999997 88899999999999999999999
Q ss_pred hhhhhhhcCCCC--CCCCCCCHHHHHHHcCCC
Q 009060 496 YTIEVEIHDGPY--NVIKNWDYTGLVNAIHNG 525 (545)
Q Consensus 496 ~g~~~~~~~~~~--~~l~~~d~~~lA~a~G~~ 525 (545)
-+| .+++- ..++.++++++.++.|++
T Consensus 539 vAM----TGgQ~~~g~~~~~~i~~~~~a~GV~ 566 (1165)
T PRK09193 539 VAM----TGGQPVDGGLSVPQITRQLAAEGVK 566 (1165)
T ss_pred ccc----cCCCCCCCCcchhhHHHHHHhCCCC
Confidence 999 32211 114678999999999996
No 102
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.65 E-value=1.6e-13 Score=155.14 Aligned_cols=457 Identities=15% Similarity=0.059 Sum_probs=266.5
Q ss_pred CCCccHHHHHHHHH-------HHcCCC---EEEecCCCChHHHHHhhhcC------CCCeEEecCchhHHHHHHhHHhh-
Q 009060 24 ASVGTLGRHLARRL-------VEIGAK---DVFSVPGDFNLTLLDHLIAE------PELNLVGCCNELNAGYAADGYAR- 86 (545)
Q Consensus 24 ~~~~~~a~~i~~~L-------~~~GV~---~vFg~pG~~~~~l~~al~~~------~~i~~i~~~hE~~A~~~A~gyar- 86 (545)
-.-++|.|+|++.+ .+.|++ .|-|+||+++..+.+.|.+. .+|.+-+..||..|+-|..|-.+
T Consensus 28 ~~~l~G~qAlvR~~l~q~~~D~~aGl~tag~vsgYpGSPl~~id~~l~~~~~~l~~~~i~fe~~~NEklAatav~Gsq~~ 107 (1186)
T PRK13029 28 RIYISGTQALVRLPLLQRARDRRAGLNTAGFISGYRGSPLGALDQALWKAKKHLAAADVVFQPGVNEELAATAVWGSQQL 107 (1186)
T ss_pred CEeecHHHHHHHHHHHHhHHHHHcCCCccceEEecCCCCHHHHHHHHHHHhhhccccceEEeecCCHHHHHHHhhhhhhc
Confidence 45689999999999 999999 99999999999999988653 25999999999999888888543
Q ss_pred -------hcCceEEEEcCCcchHHHHHHHHHhH--hcCC--cEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhc
Q 009060 87 -------SRGVGACVVTFTVGGLSVLNAIAGAY--SENL--PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAI 155 (545)
Q Consensus 87 -------~tg~gv~~~t~GpG~~n~~~~l~~A~--~~~~--Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 155 (545)
..|.-.+....|||+--+.-++..+. ..+. -||+|+||.+..... +.++| .+...++..+
T Consensus 108 e~~~~a~~dGv~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~SS--------q~eqd-Sr~~~~~a~i 178 (1186)
T PRK13029 108 ELDPGAKRDGVFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKSS--------SVAHQ-SDHTFIAWGI 178 (1186)
T ss_pred ccccceeeccceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCccc--------cCHHH-HHHHHHHcCC
Confidence 23422344568899888888887555 4433 499999998876433 22222 2333333333
Q ss_pred eeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCCCCCCCCCCCCC-C----CC--cccCC-----CCCC-ch---
Q 009060 156 TCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARD-P----VP--FFLAP-----KVSN-QL--- 219 (545)
Q Consensus 156 ~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv~~~~~~~~~~~-~----~~--~~~~~-----~~~~-~~--- 219 (545)
-...+.+++++.++...||..+....-||-+-.-.++.+....+.... . .+ ...++ .-.. +.
T Consensus 179 --Pvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~~f~~~~~g~~~r~~~~p~~~e 256 (1186)
T PRK13029 179 --PVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPDDFVLPPGGLHIRWPDDPLAQE 256 (1186)
T ss_pred --ceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcccccCCccccccccCCCcHHHH
Confidence 336788899999999999999887778999998888866432221100 0 01 11111 0000 00
Q ss_pred --hhHHHHHHHHHHHHhcC-CCEEEcCc----ccccc-chHHHHHHHHHHhCC----------ceEeCCCCccCCCCCCC
Q 009060 220 --GLEAAVEATADFLNKAV-KPVLVGGP----NIRVA-KAQKAFIELADATGY----------PIAIMPSGKGLVPEHHP 281 (545)
Q Consensus 220 --~~~~~i~~~~~~l~~a~-rpvi~~G~----g~~~~-~a~~~l~~lae~~~~----------Pv~tt~~~kg~~~~~hp 281 (545)
-....+..+.+.....+ +-+.+-|. |+..+ .+...+++..+.+|+ +++
T Consensus 257 ~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~lgl~~~~~~~~gi~il-------------- 322 (1186)
T PRK13029 257 ERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDLGLDDATCAALGIRLL-------------- 322 (1186)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHcCCChhhccccCCCEE--------------
Confidence 01112233333222111 11122121 22222 133444444455444 443
Q ss_pred CccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCC--cccccccCCC-CC-cEEEEcCCc---------ceecC--CCcc
Q 009060 282 HFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDY--SSVGYSLLIK-KE-KAIIVQPHR---------VTVGN--GPSL 346 (545)
Q Consensus 282 l~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~--~~~~~~~~~~-~~-~~i~id~d~---------~~~~~--~~~~ 346 (545)
-+|+.+ .+......++.+..|-||++-..-.-. .....-+..+ .. .-|.=-.|. .+-|. -...
T Consensus 323 -Kvgm~~-PL~~~~i~~Fa~g~d~vlVVEE~~p~iE~qlk~~l~~~~~~~rp~v~GK~~~~~~~~~~~~~~~g~~llp~~ 400 (1186)
T PRK13029 323 -KVGCVW-PLDPQSVREFAQGLEEVLVVEEKRAVIEYQLKEELYNWREDVRPAIFGKFDHRDGAGGEWSVPAGRWLLPAH 400 (1186)
T ss_pred -EeCCCC-CCCHHHHHHHHhcCCEEEEEecCchHHHHHHHHHHhhccCCcCCeeEecccccccccccccccccCCCCCcc
Confidence 233311 123345678889999999997542211 1110000001 00 011111110 00010 1122
Q ss_pred ccccHHHHHHHHHHHhccC-----chh----hhhhhhhcC-----CCC-CCCcCCCCCCcCHHHHHHHHHhhCCCCCEEE
Q 009060 347 GWVFMADFLSALAKKLRKN-----TTA----LENYRRIYV-----PPG-IPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (545)
Q Consensus 347 ~~~d~~~~l~~L~~~l~~~-----~~~----~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv 411 (545)
.+.++..+...|...+... ... ...+..... +.. ....+.-+..+.+...++. |++.++.
T Consensus 401 gEL~p~~va~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~R~P~fCsGCPH~~st~~-----~~gs~~~ 475 (1186)
T PRK13029 401 AELSPALIAKAIARRLAALGLPADVAARMDARVADIEAKERAAAQPRLLTERKPWFCSGCPHNTSTRV-----PEGSRAL 475 (1186)
T ss_pred cCcCHHHHHHHHHHHHHhcCCCcccchhhhhhhhhcccccccccccccCCCCCCCcCCCCCCchhhcc-----CCCCEEe
Confidence 3456666666665554211 000 001110000 011 1112233444555544333 6788999
Q ss_pred ecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhccc-HHHHHHHHHhCCCeEEEE
Q 009060 412 AETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT-AQEISTMIRCGQRSIIFL 490 (545)
Q Consensus 412 ~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~-~~eL~ta~~~~lpi~ivV 490 (545)
.|+||+.+..+.. +. ..++-+||.++..++|.+-...+++||+.+|||.|+|+ +..|..++..+.|++++|
T Consensus 476 ~dIGChtl~~~~~---~~-----~~~~~~MGgeg~~~~G~a~f~~~~hv~aniGDgTffHSG~~alr~AV~~~~nit~kI 547 (1186)
T PRK13029 476 AGIGCHYMAMWMD---RS-----TEGFSQMGGEGVAWIGQMPFSRRRHVFQNLGDGTYFHSGLLAIRQAIAAGVNITYKI 547 (1186)
T ss_pred cCcCHHHHhhccc---cc-----cceeeccCcchhhheeecccCCCCCEEEEeccccchhcCHHHHHHHHhcCCCEEEEE
Confidence 9999998754421 11 23457899999999999887778899999999999997 788999999999999999
Q ss_pred EeCCchhhhhhhcCCCCCCCCCCCHHH---HHHHcCCC
Q 009060 491 INNGGYTIEVEIHDGPYNVIKNWDYTG---LVNAIHNG 525 (545)
Q Consensus 491 ~NN~~~g~~~~~~~~~~~~l~~~d~~~---lA~a~G~~ 525 (545)
++|+.-+| .+++-.+ ..++..+ +.++.|++
T Consensus 548 L~N~avAM----TGgQp~~-G~~~v~~i~~~~~a~GV~ 580 (1186)
T PRK13029 548 LYNDAVAM----TGGQPVD-GVLTVPQIARQVHAEGVR 580 (1186)
T ss_pred EeCcchhc----cCCCCCC-CcCCHHHHHHHHHhCCcc
Confidence 99999998 3222111 1356666 66999996
No 103
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=99.48 E-value=1.2e-13 Score=124.21 Aligned_cols=129 Identities=17% Similarity=0.159 Sum_probs=95.2
Q ss_pred HHHHHHHHhcCCCEEEcCccccc-cchHHHHHHHHHHhCCceEeCCC------CccCCCCCCCCccceecCCCCCHHHHH
Q 009060 226 EATADFLNKAVKPVLVGGPNIRV-AKAQKAFIELADATGYPIAIMPS------GKGLVPEHHPHFIGTYWGAVSSSFCGE 298 (545)
Q Consensus 226 ~~~~~~l~~a~rpvi~~G~g~~~-~~a~~~l~~lae~~~~Pv~tt~~------~kg~~~~~hpl~~G~~~G~~~~~~~~~ 298 (545)
++++++|++||||+|++|.|+.. .++.+++++|+|++++||++|++ +||++|+ |+++|.. |..+.....+
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~--~~~lg~l-g~~~~~p~~e 101 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAK--YINLHEL-TNYLKDPNWK 101 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCC--cccHHHH-HhhccCchhh
Confidence 57889999999999999999987 78899999999999999999999 8999998 9999885 6777777888
Q ss_pred Hh---hcCCEEEEeCCCCCCCcc--cccccCCCCCcEEEEcCCcceecC-CCccccccHHHHHHHHHH
Q 009060 299 IV---ESADAYVFVGPIFNDYSS--VGYSLLIKKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSALAK 360 (545)
Q Consensus 299 ~l---~~aD~vl~lG~~~~~~~~--~~~~~~~~~~~~i~id~d~~~~~~-~~~~~~~d~~~~l~~L~~ 360 (545)
.+ .++|+||.+|+++.-... .....+.+ .|.|.++... ..+ ...++.++-+++++.|-+
T Consensus 102 ~~~g~~~~DlvlfvG~~~~~~~~~l~~lk~f~~-~~~~~~~~~y--~~~a~~s~~~~~~~~~~~~l~~ 166 (171)
T PRK00945 102 GLDGNGNYDLVIFIGVTYYYASQGLSALKHFSP-LKTITIDRYY--HPNADMSFPNLSKEEYLEYLDE 166 (171)
T ss_pred hhcCCCCcCEEEEecCCchhHHHHHHHHhhcCC-ceEEEecCCc--CCCCceecCCCCHHHHHHHHHH
Confidence 88 799999999998742221 12223334 5666666433 210 122344444555555433
No 104
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=99.47 E-value=1.4e-13 Score=123.04 Aligned_cols=85 Identities=15% Similarity=0.265 Sum_probs=77.0
Q ss_pred HHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCC------ccCCCCCCCCccceecCCCCCHHHHHH
Q 009060 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSG------KGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (545)
Q Consensus 226 ~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~------kg~~~~~hpl~~G~~~G~~~~~~~~~~ 299 (545)
++++++|++||||+|++|.|+.+.++.+++++|+|++++||++|+.+ ||++ +||.++|.. |..+.....+.
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~--~~~~~lg~~-g~~~~~p~~e~ 94 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIE--SEEMNLHEI-TQFLADPSWEG 94 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCee--cCCCCHHHH-HHhccCchhhh
Confidence 57888999999999999999998899999999999999999999998 9998 788888875 66677778888
Q ss_pred h---hcCCEEEEeCCCC
Q 009060 300 V---ESADAYVFVGPIF 313 (545)
Q Consensus 300 l---~~aD~vl~lG~~~ 313 (545)
+ .++|+||.+|+++
T Consensus 95 ~~g~g~~DlvlfvG~~~ 111 (162)
T TIGR00315 95 FDGEGNYDLVLFLGIIY 111 (162)
T ss_pred ccCCCCcCEEEEeCCcc
Confidence 8 8999999999987
No 105
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.46 E-value=7.1e-14 Score=137.19 Aligned_cols=96 Identities=21% Similarity=0.239 Sum_probs=78.7
Q ss_pred cCccccchhHHHHHHhhhhcC----CCeEEEEEcchhhcc--cHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCC
Q 009060 436 MQYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQV--TAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 509 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p----~r~vv~i~GDGsf~~--~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~~~~~~~ 509 (545)
...|+||+++|+|+|++++.+ +++|++++|||+|++ +.++|+++.++++|.+++|+||++|++... ....
T Consensus 102 ~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~----~~~~ 177 (255)
T cd02012 102 VTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGP----TDDI 177 (255)
T ss_pred eCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCc----Hhhc
Confidence 356999999999999999866 899999999999998 588999999999999999999999998211 1123
Q ss_pred CCCCCHHHHHHHcCCCCCceeEEEEe--eceee
Q 009060 510 IKNWDYTGLVNAIHNGEGKCWTAKVS--IYKMC 540 (545)
Q Consensus 510 l~~~d~~~lA~a~G~~~~~~~~~~v~--~~~~~ 540 (545)
....||++++++||++ .++|+ +.+++
T Consensus 178 ~~~~~~~~~~~a~G~~-----~~~v~G~d~~~l 205 (255)
T cd02012 178 LFTEDLAKKFEAFGWN-----VIEVDGHDVEEI 205 (255)
T ss_pred cCchhHHHHHHHcCCe-----EEEECCCCHHHH
Confidence 4568999999999997 44565 55544
No 106
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.42 E-value=2.1e-13 Score=138.89 Aligned_cols=94 Identities=17% Similarity=0.077 Sum_probs=75.6
Q ss_pred cCccccchhHHHHHHhhhhc----CCCeEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCC
Q 009060 436 MQYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 509 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~----p~r~vv~i~GDGsf~~~--~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~~~~~~~ 509 (545)
+..+.||+++|.|+|++++. |+++||+++|||+|+++ .++|.|++++++|+++||.||+ |++.... ...
T Consensus 119 g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~-~~~~~~~----~~~ 193 (341)
T TIGR03181 119 PPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQ-WAISVPR----SKQ 193 (341)
T ss_pred CCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCC-Cccccch----hhh
Confidence 45578999999999998887 89999999999999998 5789999999999999999996 7751100 111
Q ss_pred CCCCCHHHHHHHcCCCCCceeEEEEeecee
Q 009060 510 IKNWDYTGLVNAIHNGEGKCWTAKVSIYKM 539 (545)
Q Consensus 510 l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~ 539 (545)
...+||.++|++||++ +++|+..+.
T Consensus 194 ~~~~d~~~~a~a~G~~-----~~~Vdg~d~ 218 (341)
T TIGR03181 194 TAAPTLAQKAIAYGIP-----GVQVDGNDV 218 (341)
T ss_pred hCCcCHHHHHhhCCCC-----EEEECCCCH
Confidence 2458999999999997 456666554
No 107
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.37 E-value=9e-13 Score=131.96 Aligned_cols=89 Identities=19% Similarity=0.159 Sum_probs=72.7
Q ss_pred cCccccchhHHHHHHhhhhc----CCCeEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCC
Q 009060 436 MQYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 509 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~----p~r~vv~i~GDGsf~~~--~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~~~~~~~ 509 (545)
...|+||+++|.|+|++++. ++++||+++|||+|++. ..+|+|++++++|+++||.||+ |++..... ..
T Consensus 101 ~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~-~~i~~~~~----~~ 175 (293)
T cd02000 101 GGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNG-YAISTPTS----RQ 175 (293)
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCC-eeccCCHH----HH
Confidence 46799999999999999886 78999999999999987 3679999999999999999995 99821110 01
Q ss_pred CCCCCHHHHHHHcCCCCCce
Q 009060 510 IKNWDYTGLVNAIHNGEGKC 529 (545)
Q Consensus 510 l~~~d~~~lA~a~G~~~~~~ 529 (545)
.+.+||.++|++||+++.++
T Consensus 176 ~~~~~~~~~a~a~G~~~~~V 195 (293)
T cd02000 176 TAGTSIADRAAAYGIPGIRV 195 (293)
T ss_pred hCCccHHHHHHhCCCCEEEE
Confidence 24689999999999985433
No 108
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.33 E-value=1.7e-12 Score=130.90 Aligned_cols=87 Identities=17% Similarity=0.120 Sum_probs=72.0
Q ss_pred cCccccchhHHHHHHhhhhc----CCCeEEEEEcchhhcccH--HHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCC
Q 009060 436 MQYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQVTA--QEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 509 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~----p~r~vv~i~GDGsf~~~~--~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~~~~~~~ 509 (545)
+..|.||+++|.|+|+++|. ++++||+++|||+|++.. .+|.++..+++|+++||+||+ |++...... .
T Consensus 107 ~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~-yg~s~~~~~----~ 181 (315)
T TIGR03182 107 GGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNL-YAMGTSVER----S 181 (315)
T ss_pred cCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCC-ccccCCHHH----H
Confidence 56799999999999999998 789999999999998763 669999999999999999995 998211100 1
Q ss_pred CCCCCHHHHHHHcCCCCC
Q 009060 510 IKNWDYTGLVNAIHNGEG 527 (545)
Q Consensus 510 l~~~d~~~lA~a~G~~~~ 527 (545)
....||+++|++||+++.
T Consensus 182 ~~~~~~a~~A~a~G~~~~ 199 (315)
T TIGR03182 182 SSVTDLYKRGESFGIPGE 199 (315)
T ss_pred hCCcCHHHHHHhCCCCEE
Confidence 245799999999999854
No 109
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.26 E-value=7.8e-12 Score=127.04 Aligned_cols=92 Identities=14% Similarity=0.064 Sum_probs=73.0
Q ss_pred cCccccchhHHHHHHhhhhc-----------CCCeEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCC-chhhhhh
Q 009060 436 MQYGSIGWSVGATLGYAQAA-----------KDKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNG-GYTIEVE 501 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~-----------p~r~vv~i~GDGsf~~~--~~eL~ta~~~~lpi~ivV~NN~-~~g~~~~ 501 (545)
+++|.||+++|.|+|+++|. |++.||+++|||+|+.. ..+|.+++++++|+++||.||+ +++....
T Consensus 125 ~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~ 204 (341)
T CHL00149 125 GGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHH 204 (341)
T ss_pred CCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchh
Confidence 57899999999999999994 78999999999999732 2269999999999999999999 4554111
Q ss_pred hcCCCCCCCCCCCHHHHHHHcCCCCCceeEEEEeece
Q 009060 502 IHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYK 538 (545)
Q Consensus 502 ~~~~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~ 538 (545)
.....+||.++|++||+++ ++|+..+
T Consensus 205 ------~~~~~~d~a~~a~a~G~~~-----~~Vdg~d 230 (341)
T CHL00149 205 ------RSTSIPEIHKKAEAFGLPG-----IEVDGMD 230 (341)
T ss_pred ------heeCCccHHHHHHhCCCCE-----EEEeCCC
Confidence 0113579999999999974 5555544
No 110
>PRK05899 transketolase; Reviewed
Probab=99.23 E-value=1.2e-11 Score=136.42 Aligned_cols=86 Identities=21% Similarity=0.221 Sum_probs=74.1
Q ss_pred cCccccchhHHHHHHhhhhcC--------------CCeEEEEEcchhhcccH-HH-HHHHHHhCCCeEEEEEeCCchhhh
Q 009060 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQVTA-QE-ISTMIRCGQRSIIFLINNGGYTIE 499 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p--------------~r~vv~i~GDGsf~~~~-~e-L~ta~~~~lpi~ivV~NN~~~g~~ 499 (545)
...|+||+++|.|+|++++.+ +++|+|++|||+|+++. .| |.|++++++|.+++|+||++|++.
T Consensus 115 ~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~ 194 (624)
T PRK05899 115 TTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISID 194 (624)
T ss_pred eCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCccc
Confidence 358999999999999999977 78999999999999985 55 999999999999999999999982
Q ss_pred hhhcCCCCCCCCCCCHHHHHHHcCCCC
Q 009060 500 VEIHDGPYNVIKNWDYTGLVNAIHNGE 526 (545)
Q Consensus 500 ~~~~~~~~~~l~~~d~~~lA~a~G~~~ 526 (545)
++.......||.+++++||+++
T Consensus 195 -----~~~~~~~~~~~~~~~~a~G~~~ 216 (624)
T PRK05899 195 -----GPTEGWFTEDVKKRFEAYGWHV 216 (624)
T ss_pred -----ccccccccccHHHHhccCCCeE
Confidence 2222334679999999999974
No 111
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.06 E-value=2.4e-09 Score=105.64 Aligned_cols=136 Identities=15% Similarity=0.100 Sum_probs=103.6
Q ss_pred CCCCcCHHHHHHHHHhhCCCCCEEEecCCcccccccccc-ccCCCeeEeccCccccchhHHHHHHhhhh----cCCCeEE
Q 009060 387 QNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLR-LPENCGYEFQMQYGSIGWSVGATLGYAQA----AKDKRVI 461 (545)
Q Consensus 387 ~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~-~~~~~~~~~~~~~g~mG~~l~aAiGaala----~p~r~vv 461 (545)
.+..+...-+++.|.+.+.++.+++.++|++..+...+. .| +-.....+.||-+.+.|.|.+.| .++++||
T Consensus 20 ~C~GCg~~~~~~~l~~a~g~~~vi~~~iGC~s~~~~~~p~~~----~~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv 95 (299)
T PRK11865 20 ACAGCGAAIAMRLALKALGKNTVIVVATGCLEVITTPYPETA----WNVPWIHVAFENAAAVASGIERAVKALGKKVNVV 95 (299)
T ss_pred CCcCCCcHHHHHHHHHHcCCCEEEEeCCCcccccCccCcCCc----cccccchhhhcchHHHHHHHHHHHHHhcCCCeEE
Confidence 355678888999999999999999999999987643221 11 22234457889999999998877 3567899
Q ss_pred EEEcchhhcc-cHHHHHHHHHhCCCeEEEEEeCCchhh---hhhhc--CC------C------CCCCCCCCHHHHHHHcC
Q 009060 462 ACIGDGSFQV-TAQEISTMIRCGQRSIIFLINNGGYTI---EVEIH--DG------P------YNVIKNWDYTGLVNAIH 523 (545)
Q Consensus 462 ~i~GDGsf~~-~~~eL~ta~~~~lpi~ivV~NN~~~g~---~~~~~--~~------~------~~~l~~~d~~~lA~a~G 523 (545)
++.|||++.. ..+.|..+++.+.|+++||+||+.|++ |.... .+ + ....+..|+.+||.++|
T Consensus 96 ~~~GDG~~~dIG~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g 175 (299)
T PRK11865 96 AIGGDGGTADIGFQSLSGAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHG 175 (299)
T ss_pred EEeCCchHhhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcC
Confidence 9999998866 588999999999999999999999998 22110 00 0 01235789999999999
Q ss_pred CCC
Q 009060 524 NGE 526 (545)
Q Consensus 524 ~~~ 526 (545)
+.|
T Consensus 176 ~~Y 178 (299)
T PRK11865 176 IPY 178 (299)
T ss_pred CCE
Confidence 974
No 112
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.02 E-value=3.2e-10 Score=117.88 Aligned_cols=91 Identities=13% Similarity=0.004 Sum_probs=70.9
Q ss_pred ccCccccchhHHHHHHhhhh-----------cCCCeEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCC-chhhhh
Q 009060 435 QMQYGSIGWSVGATLGYAQA-----------AKDKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNG-GYTIEV 500 (545)
Q Consensus 435 ~~~~g~mG~~l~aAiGaala-----------~p~r~vv~i~GDGsf~~~--~~eL~ta~~~~lpi~ivV~NN~-~~g~~~ 500 (545)
.+.++.||+++|.|+|+++| .+++.|++++|||+++.. ..+|.+|..+++|+++||.||+ +++...
T Consensus 190 ~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~ 269 (433)
T PLN02374 190 LGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 269 (433)
T ss_pred CCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEeeccee
Confidence 36778999999999999998 368899999999999765 3479999999999999998888 334311
Q ss_pred hhcCCCCCCCCCCCHHHHHHHcCCCCCceeE
Q 009060 501 EIHDGPYNVIKNWDYTGLVNAIHNGEGKCWT 531 (545)
Q Consensus 501 ~~~~~~~~~l~~~d~~~lA~a~G~~~~~~~~ 531 (545)
. . ....+||.+.|++||+++.+|++
T Consensus 270 ~---~---~t~~~dia~~A~a~G~~~~~VDG 294 (433)
T PLN02374 270 L---R---ATSDPEIWKKGPAFGMPGVHVDG 294 (433)
T ss_pred e---e---ccCCCCHHHHHHhcCCcEEEECC
Confidence 0 0 01357999999999998544333
No 113
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.98 E-value=5.8e-09 Score=102.87 Aligned_cols=136 Identities=13% Similarity=0.076 Sum_probs=100.0
Q ss_pred CCCcCHHHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhc-----CCCeEEE
Q 009060 388 NEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAA-----KDKRVIA 462 (545)
Q Consensus 388 ~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~-----p~r~vv~ 462 (545)
+..+...-+++.+.+.+.++++++.|+|++......+... . +-.+.-...||.+++.|.|+++|. ++..|++
T Consensus 21 C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~-~--~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva 97 (300)
T PRK11864 21 CPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKS-P--LTVPVLHTAFAATAAVASGIEEALKARGEKGVIVVG 97 (300)
T ss_pred CCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCcc-c--ccccceeehhhChHHHHHHHHHHHHhhCCCCcEEEE
Confidence 3446666677888888989999999999986532222111 1 122334578999999999999985 4567888
Q ss_pred EEcchhhcc-cHHHHHHHHHhCCCeEEEEEeCCchhh-hhhhcC----C------C-CCCCCCCCHHHHHHHcCCCC
Q 009060 463 CIGDGSFQV-TAQEISTMIRCGQRSIIFLINNGGYTI-EVEIHD----G------P-YNVIKNWDYTGLVNAIHNGE 526 (545)
Q Consensus 463 i~GDGsf~~-~~~eL~ta~~~~lpi~ivV~NN~~~g~-~~~~~~----~------~-~~~l~~~d~~~lA~a~G~~~ 526 (545)
+.|||++.. ..+.|..++..++|+++||+||+.|++ ..+... + + ....+..|..+|++++|+.+
T Consensus 98 ~~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~y 174 (300)
T PRK11864 98 WAGDGGTADIGFQALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAHKVPY 174 (300)
T ss_pred EEccCccccccHHHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHcCCCE
Confidence 999999866 578899999999999999999999998 111111 1 1 11236789999999999973
No 114
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=98.97 E-value=4.6e-09 Score=88.73 Aligned_cols=165 Identities=16% Similarity=0.145 Sum_probs=127.7
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchH
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGL 102 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~ 102 (545)
+++++..+++.+.|++.||++++.+|.+..-.++.-+++++.|..|....|..+...+.|-+.+-+ ++.++..|| +.
T Consensus 1 ~~kvn~seav~e~mkdagIdfa~slPC~~lk~ll~lveedp~i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsG--lG 78 (172)
T COG4032 1 MYKVNPSEAVYEAMKDAGIDFACSLPCDNLKNLLPLVEEDPEIPEIPVTREEEGVGICAGAYLAGKKPAILMQNSG--LG 78 (172)
T ss_pred CcccCHHHHHHHHHHHcCCcEEEeccHHHHHhHHHHHhcCCCcccccccchhcceeeehhhhhcCCCcEEEEeccC--cc
Confidence 468999999999999999999999999999999998988889999988888888888888566655 888887766 55
Q ss_pred HHHHHHHHhHh-cCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhh
Q 009060 103 SVLNAIAGAYS-ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK 181 (545)
Q Consensus 103 n~~~~l~~A~~-~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~ 181 (545)
|.+|++++-|. -++|++.|.+.+.....+-.. |-..|. -.-++++..---.+.+.+|++..+++..|+..|..
T Consensus 79 NsiNal~SL~~ty~iPl~ml~ShRG~~~E~i~A--QVpmGr----~~~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~ 152 (172)
T COG4032 79 NSINALASLYVTYKIPLLMLASHRGVLKEGIEA--QVPMGR----ALPKILEGLELPTYTIIGPEEALPLIENAILDAFE 152 (172)
T ss_pred hHHHHHHHHHHHhccchhhhhhccchhhcCCcc--ccccch----hhHHHHhhcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 99999999775 789999999887665333211 111110 11234444433457888999999999999999998
Q ss_pred CCCcEEEEeCCCCCC
Q 009060 182 ESKPVYISISCNLPG 196 (545)
Q Consensus 182 ~~GPV~l~iP~dv~~ 196 (545)
...||-+-+-..+++
T Consensus 153 ~s~pv~vlls~~~We 167 (172)
T COG4032 153 NSRPVAVLLSPKYWE 167 (172)
T ss_pred cCCceEEEechHHhh
Confidence 888988877666554
No 115
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=98.96 E-value=2.8e-08 Score=102.50 Aligned_cols=164 Identities=14% Similarity=0.032 Sum_probs=129.8
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcch
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG 101 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~---~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~ 101 (545)
..++|.++++....+.|++.++++|+++..++++.+.+. -+..++..-+|.+|..||.| |-.+|.-++..|||||+
T Consensus 5 ~~~~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~~~~~~vq~E~E~aA~~~a~G-As~aG~Ra~TaTSg~Gl 83 (376)
T PRK08659 5 DFLQGNEACAEGAIAAGCRFFAGYPITPSTEIAEVMARELPKVGGVFIQMEDEIASMAAVIG-ASWAGAKAMTATSGPGF 83 (376)
T ss_pred EEeehHHHHHHHHHHhCCCEEEEcCCCChHHHHHHHHHhhhhhCCEEEEeCchHHHHHHHHh-HHhhCCCeEeecCCCcH
Confidence 458999999999999999999999999999999988653 24688999999999999999 55668557778999999
Q ss_pred HHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHH-Hhh---hceeEEEEeCChhhHHHHHHHHHH
Q 009060 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELR-CFQ---AITCSQAVVNNLGDAHELIDTAIS 177 (545)
Q Consensus 102 ~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~---~~~k~~~~v~~~~~~~~~l~~A~~ 177 (545)
+=+.-.+.-|...++|++++..+++....|-- +.. +..|+.. .+. .+-.-.....+++++.++..+||+
T Consensus 84 ~lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p-----~~~--~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~ 156 (376)
T PRK08659 84 SLMQENIGYAAMTETPCVIVNVQRGGPSTGQP-----TKP--AQGDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFN 156 (376)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeecCCCCCCCC-----CCc--CcHHHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999875433311 011 1123322 222 334456788899999999999999
Q ss_pred HhhhCCCcEEEEeCCCCCC
Q 009060 178 TALKESKPVYISISCNLPG 196 (545)
Q Consensus 178 ~a~~~~GPV~l~iP~dv~~ 196 (545)
.|...+-||.+..-.-+.+
T Consensus 157 lAE~~~~PViv~~D~~lsh 175 (376)
T PRK08659 157 LAEKYRTPVIVLADEVVGH 175 (376)
T ss_pred HHHHHCCCEEEEechHhhC
Confidence 9998778999987765443
No 116
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=98.93 E-value=3e-08 Score=101.99 Aligned_cols=164 Identities=13% Similarity=0.047 Sum_probs=129.1
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcch
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG 101 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~---~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~ 101 (545)
.-++|.++++......|++.+.++|+++..++.+.+.+. -+..++.+-+|.+|..||.| |-.+|.-++..|||||+
T Consensus 4 ~~~~GNeAiA~ga~~ag~~~~a~YPITPsTeI~e~la~~~~~~g~~~vq~E~E~aA~~~a~G-As~aG~Ra~taTSg~G~ 82 (375)
T PRK09627 4 IISTGNELVAKAAIECGCRFFGGYPITPSSEIAHEMSVLLPKCGGTFIQMEDEISGISVALG-ASMSGVKSMTASSGPGI 82 (375)
T ss_pred eEechHHHHHHHHHHhCCCEEEEeCCCChhHHHHHHHHHHHHcCCEEEEcCCHHHHHHHHHH-HHhhCCCEEeecCCchH
Confidence 347999999999999999999999999999999988652 36789999999999999999 66668557778999999
Q ss_pred HHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHH-Hh---hhceeEEEEeCChhhHHHHHHHHHH
Q 009060 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELR-CF---QAITCSQAVVNNLGDAHELIDTAIS 177 (545)
Q Consensus 102 ~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~---~~~~k~~~~v~~~~~~~~~l~~A~~ 177 (545)
+=+.-.+.-|...++|++++..+++....|-- +.. +..|... .. ..+.+-.....+++++..+..+||+
T Consensus 83 ~lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p-----~~~--~q~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~ 155 (375)
T PRK09627 83 SLKAEQIGLGFIAEIPLVIVNVMRGGPSTGLP-----TRV--AQGDVNQAKNPTHGDFKSIALAPGSLEEAYTETVRAFN 155 (375)
T ss_pred HHHhhHHHHHHhccCCEEEEEeccCCCcCCCC-----Ccc--chHHHHHHhcCCCCCcCcEEEeCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999764432210 000 1112211 11 1334456778899999999999999
Q ss_pred HhhhCCCcEEEEeCCCCCC
Q 009060 178 TALKESKPVYISISCNLPG 196 (545)
Q Consensus 178 ~a~~~~GPV~l~iP~dv~~ 196 (545)
.|....-||.+..-..+.+
T Consensus 156 lAE~~~~PViv~~D~~lsh 174 (375)
T PRK09627 156 LAERFMTPVFLLLDETVGH 174 (375)
T ss_pred HHHHHcCceEEecchHHhC
Confidence 9998789999987775543
No 117
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=98.91 E-value=1e-09 Score=102.94 Aligned_cols=62 Identities=27% Similarity=0.442 Sum_probs=53.8
Q ss_pred cCccccchhHHHHHHhhhhcC----CCeEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhh
Q 009060 436 MQYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTI 498 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p----~r~vv~i~GDGsf~--~~~~eL~ta~~~~lpi~ivV~NN~~~g~ 498 (545)
...|++|.++|.|+|++++.+ +++|++++|||+|+ +...+|.+|+++++|+++ |+||++|++
T Consensus 72 ~~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~-vvdnN~~~~ 139 (195)
T cd02007 72 FGTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIV-ILNDNEMSI 139 (195)
T ss_pred ECCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEE-EEECCCccc
Confidence 367999999999999999865 78999999999998 788999999999999877 555666776
No 118
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=98.91 E-value=4.8e-08 Score=99.95 Aligned_cols=162 Identities=14% Similarity=0.044 Sum_probs=127.6
Q ss_pred CccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcchH
Q 009060 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 102 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~---~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~ 102 (545)
.++|.++++....+.|++.+.++|+++..++++.|.+. -+..++..-+|.+|..||.| |-.+|.-++..|||||++
T Consensus 6 ~~~GNeAiA~ga~~ag~~~~a~YPiTPsTeI~e~la~~~~~~~~~~vq~E~E~aA~~~a~G-As~aG~Ra~taTSg~Gl~ 84 (352)
T PRK07119 6 LMKGNEAIAEAAIRAGCRCYFGYPITPQSEIPEYMSRRLPEVGGVFVQAESEVAAINMVYG-AAATGKRVMTSSSSPGIS 84 (352)
T ss_pred eehHHHHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHhCCEEEeeCcHHHHHHHHHH-HHhhCCCEEeecCcchHH
Confidence 48999999999999999999999999999999988653 24679999999999999999 556685566778999999
Q ss_pred HHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhh-----hceeEEEEeCChhhHHHHHHHHHH
Q 009060 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQ-----AITCSQAVVNNLGDAHELIDTAIS 177 (545)
Q Consensus 103 n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~k~~~~v~~~~~~~~~l~~A~~ 177 (545)
=+..++.-|.-.++|++++-.+++....+. +..++ .|..-..+ .+-.-.....+++++.++...||+
T Consensus 85 lm~E~l~~a~~~e~P~v~v~v~R~~p~~g~------t~~eq--~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~ 156 (352)
T PRK07119 85 LKQEGISYLAGAELPCVIVNIMRGGPGLGN------IQPSQ--GDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFD 156 (352)
T ss_pred HHHHHHHHHHHccCCEEEEEeccCCCCCCC------Ccchh--HHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHH
Confidence 999999999999999998888876432211 22211 22221212 233445778899999999999999
Q ss_pred HhhhCCCcEEEEeCCCCCC
Q 009060 178 TALKESKPVYISISCNLPG 196 (545)
Q Consensus 178 ~a~~~~GPV~l~iP~dv~~ 196 (545)
.|...+-||.+..-..+.+
T Consensus 157 lAE~~~~PViv~~D~~lsh 175 (352)
T PRK07119 157 LADKYRNPVMVLGDGVLGQ 175 (352)
T ss_pred HHHHhCCCEEEEcchhhhC
Confidence 9998778999987765533
No 119
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=98.85 E-value=4.8e-08 Score=106.26 Aligned_cols=165 Identities=17% Similarity=0.058 Sum_probs=131.0
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcc
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVG 100 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~---~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG 100 (545)
...++|.++++....+.|++.++++|+++..++++.|.+. .++.++.+-+|.+|..||.| |-.+|.-++..|||||
T Consensus 193 ~~~l~GNeAvA~ga~~ag~~~~~~YPiTPsTei~e~la~~~~~~~~~~~q~E~E~aA~~~a~G-As~aG~Ra~taTSg~G 271 (562)
T TIGR03710 193 RILISGNEAIALGAIAAGLRFYAAYPITPASDILEFLAKHLKKFGVVVVQAEDEIAAINMAIG-ASYAGARAMTATSGPG 271 (562)
T ss_pred EEEeehHHHHHHHHHHhCCceecccCCCChhHHHHHHHHhhhhhCcEEEeeccHHHHHHHHHh-HHhcCCceeecCCCCC
Confidence 3669999999999999999999999999999999988753 36999999999999999999 5566855777799999
Q ss_pred hHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHH-HHhh---hceeEEEEeCChhhHHHHHHHHH
Q 009060 101 GLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQEL-RCFQ---AITCSQAVVNNLGDAHELIDTAI 176 (545)
Q Consensus 101 ~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~---~~~k~~~~v~~~~~~~~~l~~A~ 176 (545)
+.=+.-++.-|...++|++++.+|++....+-. +..++ .|.. .++. .+-.-.....+++++.++..+||
T Consensus 272 l~lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~~-----t~~eq--~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af 344 (562)
T TIGR03710 272 FALMTEALGLAGMTETPLVIVDVQRGGPSTGLP-----TKTEQ--SDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAF 344 (562)
T ss_pred hhHhHHHHhHHHhccCCEEEEEcccCCCCCCCC-----CCccH--HHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999985533211 11111 2221 1211 12234567778999999999999
Q ss_pred HHhhhCCCcEEEEeCCCCCC
Q 009060 177 STALKESKPVYISISCNLPG 196 (545)
Q Consensus 177 ~~a~~~~GPV~l~iP~dv~~ 196 (545)
+.|....-||.+..-..+.+
T Consensus 345 ~lAe~~~~PViv~~D~~l~~ 364 (562)
T TIGR03710 345 NLAEKYQTPVIVLSDQYLAN 364 (562)
T ss_pred HHHHHhcCCEEEEechHHhC
Confidence 99998889999988766644
No 120
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=98.82 E-value=2.5e-09 Score=117.11 Aligned_cols=90 Identities=21% Similarity=0.313 Sum_probs=68.5
Q ss_pred cCccccchhHHHHHHhhhhc-----CCCeEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 009060 436 MQYGSIGWSVGATLGYAQAA-----KDKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~-----p~r~vv~i~GDGsf~--~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~~~~~~ 508 (545)
...|++|.++|.|+|++++. ++++|+|++|||+++ |+.++|.+|.++++|+ ++|+||++|++.... +....
T Consensus 114 ~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~nl-i~IvdnN~~~i~~~~-~~~~~ 191 (580)
T PRK05444 114 FGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDL-IVILNDNEMSISPNV-GALSN 191 (580)
T ss_pred ECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHHHHHhhCCCE-EEEEECCCCcCCCcc-hhhhh
Confidence 46799999999999999985 678999999999995 8999999999999998 588888889871100 00000
Q ss_pred CCCCCCHHHHHHHcCCCCC
Q 009060 509 VIKNWDYTGLVNAIHNGEG 527 (545)
Q Consensus 509 ~l~~~d~~~lA~a~G~~~~ 527 (545)
.+...++.+++++||+++.
T Consensus 192 ~~~~~~~~~~~~a~G~~~~ 210 (580)
T PRK05444 192 YLARLRSSTLFEELGFNYI 210 (580)
T ss_pred hhccccHHHHHHHcCCCee
Confidence 0223566678888888653
No 121
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=98.79 E-value=1.6e-07 Score=98.05 Aligned_cols=160 Identities=15% Similarity=0.043 Sum_probs=126.1
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-----CCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCc
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-----PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTV 99 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~-----~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~Gp 99 (545)
.-++|.++++....+.|++.++++|+++..++.+.+.+. -+..+|.+-+|.+|..||.| |-.+|.-++..||||
T Consensus 11 ~~~~GNeAiA~ga~~Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq~E~E~~A~~~~~G-As~aGaRa~TaTS~~ 89 (407)
T PRK09622 11 EVWDGNTAASNALRQAQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVMVESEHAAMSACVG-AAAAGGRVATATSSQ 89 (407)
T ss_pred eecchHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEeeccHHHHHHHHHH-HHhhCcCEEeecCcc
Confidence 458999999999999999999999999999999988642 13578889999999999999 666785577779999
Q ss_pred chHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHh
Q 009060 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTA 179 (545)
Q Consensus 100 G~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a 179 (545)
|+.=+.-++.-|...++|++++..++.... .- .+. .|..|... .+.-..-.....+++++.++..+||+.|
T Consensus 90 Gl~lm~E~l~~aa~~~~P~V~~~~~R~~~~-~~------~i~-~d~~D~~~-~r~~g~ivl~p~s~QEa~d~~~~Af~lA 160 (407)
T PRK09622 90 GLALMVEVLYQASGMRLPIVLNLVNRALAA-PL------NVN-GDHSDMYL-SRDSGWISLCTCNPQEAYDFTLMAFKIA 160 (407)
T ss_pred hHHHHhhHHHHHHHhhCCEEEEEeccccCC-Cc------CCC-chHHHHHH-HhcCCeEEEeCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999988876432 10 111 12123222 2333344567778999999999999999
Q ss_pred hhC--CCcEEEEeCCCC
Q 009060 180 LKE--SKPVYISISCNL 194 (545)
Q Consensus 180 ~~~--~GPV~l~iP~dv 194 (545)
... +-||.+..-.-+
T Consensus 161 E~~~~~~Pviv~~Dg~~ 177 (407)
T PRK09622 161 EDQKVRLPVIVNQDGFL 177 (407)
T ss_pred HHhccCCCEEEEechhh
Confidence 885 789999877664
No 122
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.76 E-value=1.9e-07 Score=96.49 Aligned_cols=156 Identities=17% Similarity=0.075 Sum_probs=121.6
Q ss_pred CccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-----CCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcc
Q 009060 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-----PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVG 100 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~-----~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG 100 (545)
.++|.++++......|++.+.++|+++..++.+.+.+. -++.++.+-+|.+|..||.| |-++|.-++..|||||
T Consensus 5 ~l~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~E~E~aA~~~aiG-As~aGaRa~TaTSg~G 83 (390)
T PRK08366 5 VVSGNYAAAYAALHARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPVESEHSAMAACIG-ASAAGARAFTATSAQG 83 (390)
T ss_pred EeeHHHHHHHHHHHhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHH-HHhhCCCeEeeeCccc
Confidence 48999999999999999999999999999999988653 24778888899999999999 5566855677799999
Q ss_pred hHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhh
Q 009060 101 GLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTAL 180 (545)
Q Consensus 101 ~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~ 180 (545)
++=+.-++..|...++|+|+.-.++.... +-. +.. +..|.. ..+.---......+++++.++..+||+.|.
T Consensus 84 l~lm~E~l~~aa~~~lPiVi~~~~R~~p~-~~~-----~~~--~q~D~~-~~~d~g~i~~~~~~~QEa~d~t~~Af~lAE 154 (390)
T PRK08366 84 LALMHEMLHWAAGARLPIVMVDVNRAMAP-PWS-----VWD--DQTDSL-AQRDTGWMQFYAENNQEVYDGVLMAFKVAE 154 (390)
T ss_pred HHHHhhHHHHHHhcCCCEEEEEeccCCCC-CCC-----Ccc--hhhHHH-HHhhcCEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888876552 111 111 111211 112111233445788999999999999999
Q ss_pred hCCCcEEEEeC
Q 009060 181 KESKPVYISIS 191 (545)
Q Consensus 181 ~~~GPV~l~iP 191 (545)
.-.-||.+..-
T Consensus 155 ~~~~PViv~~D 165 (390)
T PRK08366 155 TVNLPAMVVES 165 (390)
T ss_pred HHCCCEEEEec
Confidence 77899998874
No 123
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.72 E-value=3.1e-07 Score=95.12 Aligned_cols=158 Identities=18% Similarity=0.119 Sum_probs=122.6
Q ss_pred CccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-----CCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcc
Q 009060 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-----PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVG 100 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~-----~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG 100 (545)
-++|.++++......|++.++++|+++..++.+.+.+. -+.+++.+-+|.+|..||.| |-.+|.-++..|||||
T Consensus 6 ~~~GNeAvA~aa~~Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~~EsE~aA~~~~~G-As~aGaRa~TaTS~~G 84 (394)
T PRK08367 6 VMKANEAAAWAAKLAKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIKVESEHSAISACVG-ASAAGVRTFTATASQG 84 (394)
T ss_pred eccHHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHHHH-HHhhCCCeEeeeccch
Confidence 48999999999999999999999999999999988652 25788888899999999999 6666855777799999
Q ss_pred hHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhh
Q 009060 101 GLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTAL 180 (545)
Q Consensus 101 ~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~ 180 (545)
++=+.-.|.-|...++|+++..+++.... .-+ +| + +..| ....+..-.......+++++.++...||+.|.
T Consensus 85 l~lm~E~l~~aag~~lP~V~vv~~R~~~~-p~~--i~---~--d~~D-~~~~rd~g~~~~~a~~~QEa~D~~~~Af~lAE 155 (394)
T PRK08367 85 LALMHEVLFIAAGMRLPIVMAIGNRALSA-PIN--IW---N--DWQD-TISQRDTGWMQFYAENNQEALDLILIAFKVAE 155 (394)
T ss_pred HHHHhhHHHHHHHccCCEEEEECCCCCCC-CCC--cC---c--chHH-HHhccccCeEEEeCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887776553 111 11 1 1112 11223322333445788999999999999999
Q ss_pred hCC--CcEEEEeCCC
Q 009060 181 KES--KPVYISISCN 193 (545)
Q Consensus 181 ~~~--GPV~l~iP~d 193 (545)
..+ -||.+..---
T Consensus 156 ~~~~~~Pviv~~Dgf 170 (394)
T PRK08367 156 DERVLLPAMVGFDAF 170 (394)
T ss_pred HhCcCCCEEEEechh
Confidence 754 7999887654
No 124
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.70 E-value=1.5e-07 Score=90.36 Aligned_cols=151 Identities=19% Similarity=0.098 Sum_probs=107.4
Q ss_pred HHHHcCCCEEEecCCCChHHHHHhhhc---CCCC--eEEecCchhHHHHHHhHHhhhcCceEEEEcCCcchHHHHHHHHH
Q 009060 36 RLVEIGAKDVFSVPGDFNLTLLDHLIA---EPEL--NLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAG 110 (545)
Q Consensus 36 ~L~~~GV~~vFg~pG~~~~~l~~al~~---~~~i--~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~~~l~~ 110 (545)
...+.|++.++++|++...++++.+.+ ..++ +++.+-+|.+|..|+.| |-++|.-++..|+|||+.-+.-+|..
T Consensus 2 ga~~ag~~~~~~YPiTPstei~e~~~~~~~~~~~~~~~~~~E~E~~A~~~~~G-As~aG~ra~t~ts~~Gl~lm~e~l~~ 80 (230)
T PF01855_consen 2 GAIEAGCDFAAAYPITPSTEIMEYLAKYIADGGGDAKVVQAESEHAAMEAAIG-ASAAGARAMTATSGPGLNLMAEPLYW 80 (230)
T ss_dssp HHHHHT-SEEEE--BTTTCHHHHHHHHHHHCCTBB-EEEE-SSHHHHHHHHHH-HHHTT--EEEEEECCHHHHHCCCHHH
T ss_pred HHHhcCCceEEEeCCCCccHHHHHHHHHHHHcCCceEEEEecchHHHHHHHHH-HHhcCCceEEeecCCcccccHhHHHH
Confidence 467889999999999999999998754 2344 99999999999999999 55568444567999999999999999
Q ss_pred hHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEe
Q 009060 111 AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISI 190 (545)
Q Consensus 111 A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~i 190 (545)
+...++|++++..++.....|-. +..++ .| +-..+..-.-.....+++++.++...||+.|..-.-||.+..
T Consensus 81 a~~~~~P~V~~~~~R~g~~~g~~-----~~~~q--~D-~~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~ 152 (230)
T PF01855_consen 81 AAGTELPIVIVVVQRAGPSPGLS-----TQPEQ--DD-LMAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLF 152 (230)
T ss_dssp HHHTT--EEEEEEEB---SSSB-------SB-S--HH-HHHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHcCCCEEEEEEECCCCCCCCc-----CcCCh--hH-HHHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 99999999999998776643221 12211 23 233344445567788999999999999999999899999988
Q ss_pred CCCCC
Q 009060 191 SCNLP 195 (545)
Q Consensus 191 P~dv~ 195 (545)
-.-+.
T Consensus 153 Dg~~~ 157 (230)
T PF01855_consen 153 DGFLC 157 (230)
T ss_dssp ECCCC
T ss_pred chhhh
Confidence 76665
No 125
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.50 E-value=1.1e-06 Score=87.15 Aligned_cols=130 Identities=17% Similarity=0.120 Sum_probs=91.9
Q ss_pred CCcCHHHHHHHHHhhCCC---------CCEEEecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCe
Q 009060 389 EPLRVNVLFKHIQDMLSG---------DTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKR 459 (545)
Q Consensus 389 ~~~~~~~~~~~l~~~l~~---------~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~ 459 (545)
..+...-+++.|.+.+.+ +..|++..|++..|..++. .+...+..|-+.+.|.|.++|+++..
T Consensus 19 pGCG~~~~l~~i~~a~~~~~~l~~~~~c~~vvsgig~s~~~~~y~~--------~~~~hs~~gra~a~atGik~A~~~l~ 90 (294)
T COG1013 19 PGCGEFIILKLLTQALGDRAELGNATGCSVVVSGIGCSTRWPVYVN--------PPWVHSLHGRAAAVATGIKLANPALS 90 (294)
T ss_pred CCCCchHHHHHHHHhccchhhhccCCCCeEEEeCCccCcccccccc--------CCceeeccCcchhhHHHHHHhccCCe
Confidence 344445555555555332 3445556666655544333 12223567889999999999999999
Q ss_pred EEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhh---hhhhc--CC------C-CCCC-CCCCHHHHHHHcCCC
Q 009060 460 VIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTI---EVEIH--DG------P-YNVI-KNWDYTGLVNAIHNG 525 (545)
Q Consensus 460 vv~i~GDG-sf~~~~~eL~ta~~~~lpi~ivV~NN~~~g~---~~~~~--~~------~-~~~l-~~~d~~~lA~a~G~~ 525 (545)
||++.||| ++-...+.|..+.+.|.+|++||+||..|++ |.--. .+ + .... +..|...||-++|+.
T Consensus 91 Viv~gGDG~~~dIG~~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~ 170 (294)
T COG1013 91 VIVIGGDGDAYDIGGNHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTPKGAKTKTTPYGKRSEKKKDPGLLAMAAGAT 170 (294)
T ss_pred EEEEecchhHhhhhhHHHHHHHHcCCCeEEEEECCeecccCCCccCCCCCCCceeeecCCCCCcCCCCCHHHHHHHCCCC
Confidence 99999999 7778999999999999999999999999998 21100 01 1 1122 456999999999997
Q ss_pred C
Q 009060 526 E 526 (545)
Q Consensus 526 ~ 526 (545)
+
T Consensus 171 y 171 (294)
T COG1013 171 Y 171 (294)
T ss_pred e
Confidence 4
No 126
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=98.27 E-value=1.1e-06 Score=97.05 Aligned_cols=61 Identities=26% Similarity=0.388 Sum_probs=54.2
Q ss_pred CccccchhHHHHHHhhhhcCCCeEEEEEcchhh--cccHHHHHHHHHhCCCeEEEEEeCCchhh
Q 009060 437 QYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF--QVTAQEISTMIRCGQRSIIFLINNGGYTI 498 (545)
Q Consensus 437 ~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf--~~~~~eL~ta~~~~lpi~ivV~NN~~~g~ 498 (545)
+.|+||+++++|+|+++..++++|++++|||+| .+...+++++.++++|+++ |+||++|.+
T Consensus 121 ~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal~~a~~~~~~li~-I~dnN~~~i 183 (641)
T PRK12571 121 SSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEALNNAGAADRRLIV-ILNDNEMSI 183 (641)
T ss_pred CcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHHHHHHHhCCCEEE-EEECCCeee
Confidence 577899999999999999899999999999999 6678899999999999855 777777776
No 127
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=98.26 E-value=2.7e-05 Score=80.09 Aligned_cols=160 Identities=19% Similarity=0.117 Sum_probs=125.8
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcc
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVG 100 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~---~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG 100 (545)
+..++|.++++......|++.+.++|=+...++++.+.+. .+..++.+-+|.+|..|+.| |-.+|.-+...|+|||
T Consensus 3 ~~~~~Gn~AvA~~a~~a~~~~~a~YPITPss~i~e~l~~~~~~~~~~~vq~EsE~~a~s~v~G-A~~aGar~~TaTSg~G 81 (365)
T COG0674 3 MVVMDGNEAVAYAAIAAGCRVIAAYPITPSSEIAEYLASWKAKVGGVFVQMESEIGAISAVIG-ASYAGARAFTATSGQG 81 (365)
T ss_pred eEeccHHHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHhhcCcEEEEeccHHHHHHHHHH-HHhhCcceEeecCCcc
Confidence 4568999999999999999999999999999999887542 36899999999999999999 6677866677799999
Q ss_pred hHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhh-hceeEEEEeCChhhHHHHHHHHHHHh
Q 009060 101 GLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQ-AITCSQAVVNNLGDAHELIDTAISTA 179 (545)
Q Consensus 101 ~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~k~~~~v~~~~~~~~~l~~A~~~a 179 (545)
++=+..++.-|....+|+++...+++....+.- ..+ +..|...+.. .+.+.... +.+++.....+||+.|
T Consensus 82 l~Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p-----~~~--dq~D~~~~r~~g~~~~~~~--s~qEa~d~t~~Af~iA 152 (365)
T COG0674 82 LLLMAEALGLAAGTETPLVIVVAQRPLPSTGLP-----IKG--DQSDLMAARDTGFPILVSA--SVQEAFDLTLLAFNIA 152 (365)
T ss_pred HHHHHHHHHHHHhccCCeEEEEeccCcCCCccc-----ccc--cHHHHHHHHccCceEEeec--cHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887644321 111 2223222111 23333333 7889999999999999
Q ss_pred hhCCCcEEEEeCCC
Q 009060 180 LKESKPVYISISCN 193 (545)
Q Consensus 180 ~~~~GPV~l~iP~d 193 (545)
....-||.+.+-.-
T Consensus 153 e~~~~Pvi~~~D~~ 166 (365)
T COG0674 153 EKVLTPVIVLLDGF 166 (365)
T ss_pred HHhcCCEEEeeccc
Confidence 98778888775433
No 128
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=98.24 E-value=4.4e-06 Score=72.35 Aligned_cols=122 Identities=20% Similarity=0.262 Sum_probs=75.6
Q ss_pred HHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCC------CC-----------CCccceecC
Q 009060 227 ATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPE------HH-----------PHFIGTYWG 289 (545)
Q Consensus 227 ~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~------~h-----------pl~~G~~~G 289 (545)
-++.++++||||++++|..+...+..+.+.+|+|+.++|+++|....+.+-+ .| |.+.|.
T Consensus 27 v~ammIkkAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~G~--- 103 (170)
T COG1880 27 VVAMMIKKAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMGNLIGRGIGSEYINLHAITQYLTDPNWPGF--- 103 (170)
T ss_pred HHHHHHHhcCCceEEecccccCHHHHHHHHHHHHhcCCceEecchhhcchhhcccccchhHHHHHHHHhcCCCCCCc---
Confidence 4667999999999999999987778888999999999999999876553322 11 222221
Q ss_pred CCCCHHHHHHhhcCCEEEEeCCCCCCCc--ccccccCCCCCcEEEEcCCcceecC-CCccccccHHHHHHHHHHHh
Q 009060 290 AVSSSFCGEIVESADAYVFVGPIFNDYS--SVGYSLLIKKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSALAKKL 362 (545)
Q Consensus 290 ~~~~~~~~~~l~~aD~vl~lG~~~~~~~--~~~~~~~~~~~~~i~id~d~~~~~~-~~~~~~~d~~~~l~~L~~~l 362 (545)
-|+ .+.|+||++|+.---.. ..+...| .+ +.-|.+|+....+ ...++.++-+++++.|-+.+
T Consensus 104 -dg~-------g~yDlviflG~~~yy~sq~Ls~lKhF-s~--i~tiaId~~Y~pnAd~SFpNl~kde~~~~L~ell 168 (170)
T COG1880 104 -DGN-------GNYDLVIFLGSIYYYLSQVLSGLKHF-SN--IKTIAIDRYYQPNADYSFPNLSKDEYLAYLDELL 168 (170)
T ss_pred -CCC-------CCcceEEEEeccHHHHHHHHHHhhhh-hc--ceEEEeccccCcCccccCCCcCHHHHHHHHHHHh
Confidence 111 36899999998731111 1122222 23 4444444443321 23455555566777775543
No 129
>PLN02790 transketolase
Probab=97.95 E-value=5.7e-06 Score=91.72 Aligned_cols=86 Identities=22% Similarity=0.276 Sum_probs=63.1
Q ss_pred cCccccchhHHHHHHhhhhcC--------------CCeEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhh
Q 009060 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIE 499 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p--------------~r~vv~i~GDGsf~~~--~~eL~ta~~~~lpi~ivV~NN~~~g~~ 499 (545)
...|.+|.+++.|+|.|+|.. +..|+|++|||+++=. .-.+..|..++||-+|+|+||++|.+
T Consensus 102 ~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i- 180 (654)
T PLN02790 102 VTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISI- 180 (654)
T ss_pred ccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCccc-
Confidence 457899999999999988754 4679999999999764 44488889999998888999999988
Q ss_pred hhhcCCCCCCCCCCCHHHHHHHcCCCC
Q 009060 500 VEIHDGPYNVIKNWDYTGLVNAIHNGE 526 (545)
Q Consensus 500 ~~~~~~~~~~l~~~d~~~lA~a~G~~~ 526 (545)
.++-.....-|+.+..++||+++
T Consensus 181 ----~~~~~~~~~~~~~~~f~a~G~~~ 203 (654)
T PLN02790 181 ----DGDTEIAFTEDVDKRYEALGWHT 203 (654)
T ss_pred ----cCCcccccchhHHHHHHHcCCeE
Confidence 11111111235566666666653
No 130
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=97.93 E-value=3.9e-05 Score=72.68 Aligned_cols=86 Identities=17% Similarity=0.247 Sum_probs=62.7
Q ss_pred CccccchhHHHHHHhhhhcCCCeEEEEEcchhhccc-HHHHHHHH----HhCCCeEEEEEeCCchhhhhhhcCCCC--CC
Q 009060 437 QYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT-AQEISTMI----RCGQRSIIFLINNGGYTIEVEIHDGPY--NV 509 (545)
Q Consensus 437 ~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~-~~eL~ta~----~~~lpi~ivV~NN~~~g~~~~~~~~~~--~~ 509 (545)
..|.+|++++.|+|+++.+++..|+|++|||.+.=. +...|.+. .+++.-++.|++|++|.+ .++- ..
T Consensus 60 ~~G~LG~gLs~A~G~a~d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i-----~~pt~~~~ 134 (227)
T cd02011 60 EGGELGYSLSHAYGAVFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKI-----SNPTILAR 134 (227)
T ss_pred cccchhhHHHHHHHhhhcCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcc-----cCCccccc
Confidence 569999999999999999999999999999995432 22334432 345555666777888988 2211 22
Q ss_pred CCCCCHHHHHHHcCCCCC
Q 009060 510 IKNWDYTGLVNAIHNGEG 527 (545)
Q Consensus 510 l~~~d~~~lA~a~G~~~~ 527 (545)
.+.-++.+.+++||.+..
T Consensus 135 ~~~e~l~~~~~~yG~~~~ 152 (227)
T cd02011 135 ISHEELEALFRGYGYEPY 152 (227)
T ss_pred cCchhHHHHHHhCCCceE
Confidence 345689999999999753
No 131
>PRK12754 transketolase; Reviewed
Probab=97.91 E-value=8.4e-06 Score=89.88 Aligned_cols=93 Identities=22% Similarity=0.178 Sum_probs=67.6
Q ss_pred cCccccchhHHHHHHhhhhcC--------------CCeEEEEEcchhhccc-HHH-HHHHHHhCCCeEEEEEeCCchhhh
Q 009060 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQVT-AQE-ISTMIRCGQRSIIFLINNGGYTIE 499 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p--------------~r~vv~i~GDGsf~~~-~~e-L~ta~~~~lpi~ivV~NN~~~g~~ 499 (545)
...|++|.+++.|+|.|+|.. +..|+|++|||+++=. ..| +..|..++||-+|+|++|+++.+
T Consensus 111 ~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~i- 189 (663)
T PRK12754 111 TTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISI- 189 (663)
T ss_pred ccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCCcc-
Confidence 456899999999999988732 5679999999999864 444 77789999998888999998988
Q ss_pred hhhcCCCCCCCCCCCHHHHHHHcCCCCCc-eeEEE
Q 009060 500 VEIHDGPYNVIKNWDYTGLVNAIHNGEGK-CWTAK 533 (545)
Q Consensus 500 ~~~~~~~~~~l~~~d~~~lA~a~G~~~~~-~~~~~ 533 (545)
+++-.....-|+.+-.++||++... +++.+
T Consensus 190 ----dg~~~~~~~~~~~~r~~a~Gw~vi~vvDG~D 220 (663)
T PRK12754 190 ----DGHVEGWFTDDTAMRFEAYGWHVIRGIDGHD 220 (663)
T ss_pred ----CcchhhccCccHHHHHHhcCCeEEeeECCCC
Confidence 2211111235777777777776544 34433
No 132
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=97.90 E-value=8.2e-06 Score=90.47 Aligned_cols=86 Identities=23% Similarity=0.241 Sum_probs=62.8
Q ss_pred cCccccchhHHHHHHhhhhcC--------------CCeEEEEEcchhhccc-HHH-HHHHHHhCCCeEEEEEeCCchhhh
Q 009060 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQVT-AQE-ISTMIRCGQRSIIFLINNGGYTIE 499 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p--------------~r~vv~i~GDGsf~~~-~~e-L~ta~~~~lpi~ivV~NN~~~g~~ 499 (545)
...|++|.+++.|+|.|++.. +..|+|++|||+++=. ..| +..|..++||-+|+|+||++|.+
T Consensus 107 ~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i- 185 (653)
T TIGR00232 107 ATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISI- 185 (653)
T ss_pred eCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCeee-
Confidence 456899999999999988732 5679999999999874 444 77788999999999999999998
Q ss_pred hhhcCCCCCCCCCCCHHHHHHHcCCCC
Q 009060 500 VEIHDGPYNVIKNWDYTGLVNAIHNGE 526 (545)
Q Consensus 500 ~~~~~~~~~~l~~~d~~~lA~a~G~~~ 526 (545)
.++-.+...-|+.+..++||++.
T Consensus 186 ----~~~~~~~~~~~~~~~~~a~Gw~~ 208 (653)
T TIGR00232 186 ----DGAVDGSFTEDVAKRFEAYGWEV 208 (653)
T ss_pred ----ccccccccCccHHHHHHhcCCcE
Confidence 11111111245666666666654
No 133
>PTZ00089 transketolase; Provisional
Probab=97.89 E-value=9.2e-06 Score=90.20 Aligned_cols=87 Identities=25% Similarity=0.282 Sum_probs=63.7
Q ss_pred cCccccchhHHHHHHhhhhcC--------------CCeEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhh
Q 009060 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIE 499 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p--------------~r~vv~i~GDGsf~~~--~~eL~ta~~~~lpi~ivV~NN~~~g~~ 499 (545)
...|.+|.+++.|+|.|+|.. +..|+|++|||+++=. .-.+..|..++||-+|+|+||+++.+
T Consensus 113 ~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i- 191 (661)
T PTZ00089 113 VTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITI- 191 (661)
T ss_pred cCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCccc-
Confidence 357899999999999988743 5679999999998764 34477788999998888999999988
Q ss_pred hhhcCCCCCCCCCCCHHHHHHHcCCCCC
Q 009060 500 VEIHDGPYNVIKNWDYTGLVNAIHNGEG 527 (545)
Q Consensus 500 ~~~~~~~~~~l~~~d~~~lA~a~G~~~~ 527 (545)
.++-.....-|+.+..++||+++.
T Consensus 192 ----~~~~~~~~~~~~~~~f~a~G~~~i 215 (661)
T PTZ00089 192 ----DGNTDLSFTEDVEKKYEAYGWHVI 215 (661)
T ss_pred ----ccCcccccCccHHHHHHhcCCcEE
Confidence 111111112466677777777643
No 134
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=97.85 E-value=1.2e-05 Score=87.95 Aligned_cols=96 Identities=19% Similarity=0.199 Sum_probs=63.9
Q ss_pred CccccchhHHHHHHhhhhc----CCCeEEEEEcchhhcc-c-HHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCC---CC
Q 009060 437 QYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQV-T-AQEISTMIRCGQRSIIFLINNGGYTIEVEIHDG---PY 507 (545)
Q Consensus 437 ~~g~mG~~l~aAiGaala~----p~r~vv~i~GDGsf~~-~-~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~~~---~~ 507 (545)
..|..|.++|.|+|.++|. .++.|+|++|||++.- . ...|..|..+++|+++||- |++|.+.... ++ ..
T Consensus 111 ~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii~-dN~~si~~~~-~~~~~~l 188 (581)
T PRK12315 111 TVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVN-DNQMSIAENH-GGLYKNL 188 (581)
T ss_pred CCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEEE-CCCCcCCCCC-chhhhhh
Confidence 4566777999999988874 3568999999999988 3 4458888899999766555 5558771110 00 00
Q ss_pred ---CCCCCCCHHHHHHHcCCCCCce-eEEEE
Q 009060 508 ---NVIKNWDYTGLVNAIHNGEGKC-WTAKV 534 (545)
Q Consensus 508 ---~~l~~~d~~~lA~a~G~~~~~~-~~~~v 534 (545)
...+..|...++++||+++..+ ++.++
T Consensus 189 ~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~ 219 (581)
T PRK12315 189 KELRDTNGQSENNLFKAMGLDYRYVEDGNDI 219 (581)
T ss_pred hhhhhcccccHHHHHHhcCCeEEEeeCCCCH
Confidence 1113456778889999986444 54443
No 135
>PRK12753 transketolase; Reviewed
Probab=97.85 E-value=1e-05 Score=89.69 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=52.1
Q ss_pred CccccchhHHHHHHhhhhcC--------------CCeEEEEEcchhhccc-HH-HHHHHHHhCCCeEEEEEeCCchhh
Q 009060 437 QYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQVT-AQ-EISTMIRCGQRSIIFLINNGGYTI 498 (545)
Q Consensus 437 ~~g~mG~~l~aAiGaala~p--------------~r~vv~i~GDGsf~~~-~~-eL~ta~~~~lpi~ivV~NN~~~g~ 498 (545)
..|++|.+++.|+|.|+|.. +..|+|++|||+++=. .. .+..|.+++||-+|+|+||+++.+
T Consensus 112 ~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i 189 (663)
T PRK12753 112 TTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISI 189 (663)
T ss_pred CCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcC
Confidence 67899999999999988742 4689999999998764 33 477789999998888999999988
No 136
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.77 E-value=0.00077 Score=79.31 Aligned_cols=157 Identities=15% Similarity=0.047 Sum_probs=113.3
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhh---hcC--C---C--CeEEecCchhHHHHHHhHHhhhcCceEEE
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHL---IAE--P---E--LNLVGCCNELNAGYAADGYARSRGVGACV 94 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al---~~~--~---~--i~~i~~~hE~~A~~~A~gyar~tg~gv~~ 94 (545)
..|+|.++++..... |.+.+|++|=++..++.+.+ ... . + .+++.+-+|.+|+.|+.| +..+|.-+..
T Consensus 2 ~~~~GNeAvA~~A~~-~~~~~~~YPITPss~i~e~l~~~~~~g~~n~~G~~~~~vq~EsE~~A~~av~G-A~~aGara~T 79 (1165)
T TIGR02176 2 KTMDGNTAAAHVAYA-FSEVAAIYPITPSSTMGEYVDDWAAQGRKNIFGQTVKVVEMQSEAGAAGAVHG-ALQTGALTTT 79 (1165)
T ss_pred eeeeHHHHHHHHHHH-hCCEEEEECCCCCcHHHHHHHHHHHhCCcccCCCCceEEEccchHHHHHHHHh-HhhcCCCEEE
Confidence 458999999999988 99999999977777777766 221 1 1 279999999999999999 5556844456
Q ss_pred EcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHH
Q 009060 95 VTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDT 174 (545)
Q Consensus 95 ~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~ 174 (545)
.|+|+|++=+...|..+...++|+++..+++.....+- .+. .+..|. -..|.-.--.....+++++..+...
T Consensus 80 ~TSs~GL~LM~e~l~~~ag~~~P~Vi~va~R~~~~~~~------~i~-~dh~Dv-~~~R~~G~ivl~s~svQEa~D~al~ 151 (1165)
T TIGR02176 80 FTASQGLLLMIPNMYKIAGELLPCVFHVSARAIAAHAL------SIF-GDHQDV-MAARQTGFAMLASSSVQEVMDLALV 151 (1165)
T ss_pred ecChhHHHHHHHHHHHHHhccCCEEEEEecCCCCCCCC------ccC-CCchHH-HHhhcCCeEEEeCCCHHHHHHHHHH
Confidence 79999999999999877777999999999876553221 111 122332 2223332223444578888899999
Q ss_pred HHHHhhhCCCcEEEEeC
Q 009060 175 AISTALKESKPVYISIS 191 (545)
Q Consensus 175 A~~~a~~~~GPV~l~iP 191 (545)
|+..|...+-||.+..-
T Consensus 152 A~~lAe~~~~Pvi~~~D 168 (1165)
T TIGR02176 152 AHLATIEARVPFMHFFD 168 (1165)
T ss_pred HHHHHHhcCCCEEEEec
Confidence 99999876677766543
No 137
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=97.68 E-value=4.5e-05 Score=76.53 Aligned_cols=87 Identities=22% Similarity=0.163 Sum_probs=58.1
Q ss_pred CccccchhHHHHHHhhhhc----CCCeEEEEEcchhhccc-HHH-HHHHHHhCCCeEEEEEeCCchhh---hhhhcCCCC
Q 009060 437 QYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQVT-AQE-ISTMIRCGQRSIIFLINNGGYTI---EVEIHDGPY 507 (545)
Q Consensus 437 ~~g~mG~~l~aAiGaala~----p~r~vv~i~GDGsf~~~-~~e-L~ta~~~~lpi~ivV~NN~~~g~---~~~~~~~~~ 507 (545)
..+.+|..+|.|.|.+++. .+.-+++++|||+..-. ..| |..|..+++|+++||-||+ |++ .....
T Consensus 99 ~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~-~aist~~~~~~---- 173 (300)
T PF00676_consen 99 ASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQ-YAISTPTEEQT---- 173 (300)
T ss_dssp EESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEES-EETTEEHHHHC----
T ss_pred ccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCC-cccccCccccc----
Confidence 3466777788888887764 35568899999995542 444 6667889999977777776 888 11111
Q ss_pred CCCCCCCHHHHHHHcCCCCCceeE
Q 009060 508 NVIKNWDYTGLVNAIHNGEGKCWT 531 (545)
Q Consensus 508 ~~l~~~d~~~lA~a~G~~~~~~~~ 531 (545)
...++.+.|++||+++.+|++
T Consensus 174 ---~~~~~~~~a~~~gip~~~VDG 194 (300)
T PF00676_consen 174 ---ASPDIADRAKGYGIPGIRVDG 194 (300)
T ss_dssp ---SSSTSGGGGGGTTSEEEEEET
T ss_pred ---cccchhhhhhccCCcEEEECC
Confidence 123566778888876544433
No 138
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=97.48 E-value=0.00015 Score=73.12 Aligned_cols=92 Identities=20% Similarity=0.130 Sum_probs=58.2
Q ss_pred cCccccchhHHHHHHhhhhc-----CCCeEEEEEcchhhccc-HHH-HHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 009060 436 MQYGSIGWSVGATLGYAQAA-----KDKRVIACIGDGSFQVT-AQE-ISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~-----p~r~vv~i~GDGsf~~~-~~e-L~ta~~~~lpi~ivV~NN~~~g~~~~~~~~~~~ 508 (545)
+..+.+|..+|-|.|+++|. .++-+++++|||+-.-. ..| |--|.-+++|++++|-| ++|+|.. +..
T Consensus 133 ~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieN-N~yAiSv-----p~~ 206 (358)
T COG1071 133 GGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIEN-NQYAISV-----PRS 206 (358)
T ss_pred CCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEec-CCceeec-----chh
Confidence 45688899999999998874 23368999999998653 333 55577889997665555 5599920 011
Q ss_pred CC-CCCCHHHHHHHcCCCCCceeEEE
Q 009060 509 VI-KNWDYTGLVNAIHNGEGKCWTAK 533 (545)
Q Consensus 509 ~l-~~~d~~~lA~a~G~~~~~~~~~~ 533 (545)
.- ....++.=|.+||+++.+|++.+
T Consensus 207 ~q~~~~~~~~ra~aygipgv~VDG~D 232 (358)
T COG1071 207 RQTAAEIIAARAAAYGIPGVRVDGND 232 (358)
T ss_pred hcccchhHHhhhhccCCCeEEECCcC
Confidence 00 11234445666677655454444
No 139
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=97.47 E-value=0.00039 Score=70.90 Aligned_cols=84 Identities=21% Similarity=0.261 Sum_probs=63.2
Q ss_pred CccccchhHHHHHHhhhhcC-----------CCeEEEEEcchhhccc-HH-HHHHHHHhCCCeEEEEEeCCchhhhhhhc
Q 009060 437 QYGSIGWSVGATLGYAQAAK-----------DKRVIACIGDGSFQVT-AQ-EISTMIRCGQRSIIFLINNGGYTIEVEIH 503 (545)
Q Consensus 437 ~~g~mG~~l~aAiGaala~p-----------~r~vv~i~GDGsf~~~-~~-eL~ta~~~~lpi~ivV~NN~~~g~~~~~~ 503 (545)
..|++|.|++.|+|.|++.. +.+|+|++|||.++=. .. .+..|.+++|+=+|+|+|++...+
T Consensus 116 sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qi----- 190 (386)
T cd02017 116 PTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRL----- 190 (386)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCcc-----
Confidence 56899999999999888642 5789999999999863 33 477788999876777777777766
Q ss_pred CCCCCC--CCCCCHHHHHHHcCCC
Q 009060 504 DGPYNV--IKNWDYTGLVNAIHNG 525 (545)
Q Consensus 504 ~~~~~~--l~~~d~~~lA~a~G~~ 525 (545)
++.-.. ...-|+++--+|||++
T Consensus 191 dG~t~~v~~~~e~l~~kf~AfGW~ 214 (386)
T cd02017 191 DGPVRGNGKIIQELEGIFRGAGWN 214 (386)
T ss_pred CCcccccccCchhHHHHHHhcCCE
Confidence 332222 1345899999999985
No 140
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=97.45 E-value=1.7e-05 Score=80.19 Aligned_cols=85 Identities=27% Similarity=0.382 Sum_probs=55.6
Q ss_pred cCccccchhHHHHHHhhhhcC--------------CCeEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhh
Q 009060 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIE 499 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p--------------~r~vv~i~GDGsf~~~--~~eL~ta~~~~lpi~ivV~NN~~~g~~ 499 (545)
...|++|.|++.|+|.|+|.. +.+|+|++|||.++=. ...+..|.+++|+=+|+|+|++...+
T Consensus 108 ~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~- 186 (332)
T PF00456_consen 108 ASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQI- 186 (332)
T ss_dssp S--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESEET-
T ss_pred eeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCccc-
Confidence 357999999999999998742 4579999999999874 33488899999987777777776766
Q ss_pred hhhcCCCCCCCCCCCHHHHHHHcCCC
Q 009060 500 VEIHDGPYNVIKNWDYTGLVNAIHNG 525 (545)
Q Consensus 500 ~~~~~~~~~~l~~~d~~~lA~a~G~~ 525 (545)
++.-......|+.+--+|||++
T Consensus 187 ----dg~~~~~~~~~~~~k~~a~Gw~ 208 (332)
T PF00456_consen 187 ----DGPTDIVFSEDIAKKFEAFGWN 208 (332)
T ss_dssp ----TEEGGGTHHSHHHHHHHHTT-E
T ss_pred ----CCCcccccchHHHHHHHHhhhh
Confidence 1111111123555666666663
No 141
>PF02552 CO_dh: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina mazei (Methanosarcina frisia) Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer []. The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) []. This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0019385 methanogenesis, from acetate; PDB: 3CF4_G 1YTL_B.
Probab=97.39 E-value=0.00021 Score=64.46 Aligned_cols=127 Identities=19% Similarity=0.180 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCC-CCccCCCCCCCCccceecCCCCCHHHHHHh--
Q 009060 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP-SGKGLVPEHHPHFIGTYWGAVSSSFCGEIV-- 300 (545)
Q Consensus 224 ~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~-~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l-- 300 (545)
.++.++.+|.+||||++++|..+.+..-.++........++|++.|. ..++. ++..|-| +.. .....+
T Consensus 23 ~~~~aa~~i~kAKrPllvvGp~vl~~~~~~~~~k~~~~~~i~~~at~~~~~~~-~d~~~ky-~~~-------~~~~~l~~ 93 (167)
T PF02552_consen 23 PPEVAAKMIKKAKRPLLVVGPLVLWDWNEEAIEKAIAKKNIPIAATGFNIIGM-PDYRPKY-PKI-------EPENELND 93 (167)
T ss_dssp HSHHHHHHHHHSSSEEEEE-STT--HHHHHHHHHHHHCCTSEEEEETCCHCCH-CSSGCCE--HH-------HHHHHCCS
T ss_pred hHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHcCcceeecccccccc-ccccccc-ccc-------cHHHhcCC
Confidence 34778999999999999999999875445666777788999999987 45553 4333333 221 111122
Q ss_pred ---------hcCCEEEEeCCCCC--CCcccccccCCCCCcEEEEcCCcceecCCCccccccHHH--HHHHHHH
Q 009060 301 ---------ESADAYVFVGPIFN--DYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMAD--FLSALAK 360 (545)
Q Consensus 301 ---------~~aD~vl~lG~~~~--~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~d~~~--~l~~L~~ 360 (545)
.+.|++|++|...- +........+.+..+++.++.....=. ...+++++.+. .++.|.+
T Consensus 94 p~w~g~~g~g~~Dl~iFiGv~~yya~~~Ls~LK~ftp~~~t~~~~~~yhpnA-~~Sf~n~~~e~~~~~~~L~e 165 (167)
T PF02552_consen 94 PHWNGTDGHGNYDLVIFIGVHCYYANQVLSILKHFTPCLKTISCDRYYHPNA-DMSFPNLSKEKLEWLEYLDE 165 (167)
T ss_dssp TT--TTTSS---SEEEEES--HHHHHHHHHHHHHH-TT-EEEE-SSS--TTS-SEEE---GHHHHHHHHHHHH
T ss_pred CCCCccccCCcccEEEEecchHHHHHHHHHHHhccCCceEEEEeccccCCCc-ceecCCCCHHHHHHHHHHHh
Confidence 37899999997631 111112223345556666655432110 12344444444 5665544
No 142
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=97.29 E-value=0.00011 Score=71.61 Aligned_cols=96 Identities=15% Similarity=0.050 Sum_probs=60.8
Q ss_pred ccCccccchhHHHHHHhhhhcC---------CCeEEEEEcchhhc--ccHHH-HHHHHHhCCC---eEEEEEeCCchhhh
Q 009060 435 QMQYGSIGWSVGATLGYAQAAK---------DKRVIACIGDGSFQ--VTAQE-ISTMIRCGQR---SIIFLINNGGYTIE 499 (545)
Q Consensus 435 ~~~~g~mG~~l~aAiGaala~p---------~r~vv~i~GDGsf~--~~~~e-L~ta~~~~lp---i~ivV~NN~~~g~~ 499 (545)
..+-+.+|..+|-|+|+++|.. +.-+|++.|||+|. =...| |..+.-.++| +++||.||+ |++.
T Consensus 109 ~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq-~g~s 187 (265)
T cd02016 109 APNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQ-IGFT 187 (265)
T ss_pred cCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC-EEEE
Confidence 3455778999999999888752 34568899999973 23555 4335555787 666666655 8881
Q ss_pred hhhcCCCCCCCCCCCHHHHHHHcCCCCCceeEEEEe
Q 009060 500 VEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVS 535 (545)
Q Consensus 500 ~~~~~~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~ 535 (545)
..... .....+..+.|++||++..++++.++.
T Consensus 188 T~~~~----~~~~~~~~~~a~~~gip~~~VdG~D~~ 219 (265)
T cd02016 188 TDPRD----SRSSPYCTDVAKMIGAPIFHVNGDDPE 219 (265)
T ss_pred ecHHH----hcccccHHHHHeecCCCEEEEcCCCHH
Confidence 10000 012346778888888886655555443
No 143
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=97.27 E-value=0.00023 Score=66.03 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=57.7
Q ss_pred CccccchhHHHHHHhhhh----cCCCeEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCC
Q 009060 437 QYGSIGWSVGATLGYAQA----AKDKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVI 510 (545)
Q Consensus 437 ~~g~mG~~l~aAiGaala----~p~r~vv~i~GDGsf~~~--~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~~~~~~~l 510 (545)
+.|++|.|++.|+|.+++ ..+.+|.+++|||-+.=. -..+.+|++|+|+=+|.+++-+.... ++.-.++
T Consensus 117 stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NLiaivD~N~~Ql-----dG~t~~i 191 (243)
T COG3959 117 STGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQL-----DGETEEI 191 (243)
T ss_pred cCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHHHHHhccCcEEEEEecCCccc-----CCchhhc
Confidence 457777777666666554 457789999999988653 44588899999976665655544443 3322222
Q ss_pred -CCCCHHHHHHHcCCCCCceeEE
Q 009060 511 -KNWDYTGLVNAIHNGEGKCWTA 532 (545)
Q Consensus 511 -~~~d~~~lA~a~G~~~~~~~~~ 532 (545)
+.-|+.+-=||||++...|++.
T Consensus 192 ~~~~pL~~k~eAFGw~V~evdG~ 214 (243)
T COG3959 192 MPKEPLADKWEAFGWEVIEVDGH 214 (243)
T ss_pred cCcchhHHHHHhcCceEEEEcCc
Confidence 3346666667777654434433
No 144
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=97.25 E-value=0.00048 Score=66.14 Aligned_cols=107 Identities=22% Similarity=0.324 Sum_probs=62.3
Q ss_pred cCHHHHHHHHHhhCC-CCCEEEecCCccccc--------ccc--cc-------ccCC-CeeEeccCccccchhHHHHHHh
Q 009060 391 LRVNVLFKHIQDMLS-GDTAVIAETGDSWFN--------CQK--LR-------LPEN-CGYEFQMQYGSIGWSVGATLGY 451 (545)
Q Consensus 391 ~~~~~~~~~l~~~l~-~~~ivv~d~G~~~~~--------~~~--~~-------~~~~-~~~~~~~~~g~mG~~l~aAiGa 451 (545)
+..-++.-+|..++. +.+-++-|+|--.+. -.+ ++ +|++ -+-+...+.|--|.++++|+|.
T Consensus 44 LGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTGR~~~f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gm 123 (270)
T PF13292_consen 44 LGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILTGRRDRFHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISAALGM 123 (270)
T ss_dssp HCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTTTCCCGGGTTSTTS--SS--TTT-TT--S--SSSS-HHHHHHHH
T ss_pred ccHHHHHHHHHHHhCCCCCeEEEecccccchhhhccCcHHHhchhhhcCCcCCCCCcccCCCCcccCCccHhHHHHHHHH
Confidence 344566667777774 345567799853221 000 11 1211 1233445667788899999999
Q ss_pred hhhc----CCCeEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhh
Q 009060 452 AQAA----KDKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTI 498 (545)
Q Consensus 452 ala~----p~r~vv~i~GDGsf~--~~~~eL~ta~~~~lpi~ivV~NN~~~g~ 498 (545)
+.|+ .++.||+++|||++. |....|-.+...+-+++ ||+||++..+
T Consensus 124 a~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~~~~li-VILNDN~mSI 175 (270)
T PF13292_consen 124 AVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHLKSNLI-VILNDNEMSI 175 (270)
T ss_dssp HHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHHT-SEE-EEEEE-SBSS
T ss_pred HHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhcCCCEE-EEEeCCCccc
Confidence 9885 478999999999985 45667888888888855 5666666776
No 145
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=97.23 E-value=0.00038 Score=71.39 Aligned_cols=62 Identities=24% Similarity=0.223 Sum_probs=47.1
Q ss_pred cCccccchhHHHHHHhhhhc----CCCeEEEEEcchhhccc-HHH-HHHHHHhCCCeEEEEEeCCchhh
Q 009060 436 MQYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQVT-AQE-ISTMIRCGQRSIIFLINNGGYTI 498 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~----p~r~vv~i~GDGsf~~~-~~e-L~ta~~~~lpi~ivV~NN~~~g~ 498 (545)
+..+.+|.++|.|+|+++|. .++.+++++|||+..-. ..| |..|...++|+++||-||+ |++
T Consensus 135 ~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~-~ai 202 (362)
T PLN02269 135 GGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNH-YGM 202 (362)
T ss_pred ccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCC-Eec
Confidence 35588899999999988874 35679999999996543 333 5557788999777766666 998
No 146
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=97.12 E-value=0.0095 Score=60.43 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=53.8
Q ss_pred CeEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhh---hhhhc--CC------CC-CCCCCCCHHHHHHHcCC
Q 009060 458 KRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTI---EVEIH--DG------PY-NVIKNWDYTGLVNAIHN 524 (545)
Q Consensus 458 r~vv~i~GDG-sf~~~~~eL~ta~~~~lpi~ivV~NN~~~g~---~~~~~--~~------~~-~~l~~~d~~~lA~a~G~ 524 (545)
..||++.||| ++-...+.|.-+.+.+.+|++||+||..|++ |.-.. .+ ++ ......|...+|.++|.
T Consensus 152 ~~v~v~gGDG~~ydIG~~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~g~ 231 (365)
T cd03377 152 KSVWIIGGDGWAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSYGN 231 (365)
T ss_pred cceEEEecchhhhccchhhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHcCC
Confidence 5899999999 6677899999999999999999999999998 21100 01 11 12356799999999998
Q ss_pred CC
Q 009060 525 GE 526 (545)
Q Consensus 525 ~~ 526 (545)
.|
T Consensus 232 ~Y 233 (365)
T cd03377 232 VY 233 (365)
T ss_pred CE
Confidence 74
No 147
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=97.07 E-value=0.00092 Score=73.86 Aligned_cols=62 Identities=26% Similarity=0.397 Sum_probs=50.7
Q ss_pred cCccccchhHHHHHHhhhhc----CCCeEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhh
Q 009060 436 MQYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTI 498 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~----p~r~vv~i~GDGsf~~~--~~eL~ta~~~~lpi~ivV~NN~~~g~ 498 (545)
...|..|.+++.|+|.++|. .+..|++++|||++.=. ...+..|..+++|+ ++|+||++|++
T Consensus 108 ~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~-i~ii~~N~~~i 175 (617)
T TIGR00204 108 FSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKTDM-IVILNDNEMSI 175 (617)
T ss_pred cCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhcCCCE-EEEEECCCccc
Confidence 35677888999999988875 56789999999998764 44577788999998 88888888887
No 148
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=97.01 E-value=0.0017 Score=73.13 Aligned_cols=85 Identities=19% Similarity=0.229 Sum_probs=64.9
Q ss_pred cCccccchhHHHHHHhhhhcC-----------CCeEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhhhhh
Q 009060 436 MQYGSIGWSVGATLGYAQAAK-----------DKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIEVEI 502 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p-----------~r~vv~i~GDGsf~~~--~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~ 502 (545)
...|+||.|++.|+|.|++.. +++|+|++|||-++=. ...+..|.+++|+=+|+|+|++...+
T Consensus 186 ~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~ql---- 261 (889)
T TIGR03186 186 FPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRL---- 261 (889)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCcc----
Confidence 457999999999999988522 5789999999998763 44577889999987788888887766
Q ss_pred cCCCCCCC-C-CCCHHHHHHHcCCC
Q 009060 503 HDGPYNVI-K-NWDYTGLVNAIHNG 525 (545)
Q Consensus 503 ~~~~~~~l-~-~~d~~~lA~a~G~~ 525 (545)
+++-... . .-|+++.-++||++
T Consensus 262 -DG~t~~~~~~~e~l~~kf~a~GW~ 285 (889)
T TIGR03186 262 -DGPVRGNGRIIDELESQFAGAGWN 285 (889)
T ss_pred -CCccccccccchHHHHHHHhCCCE
Confidence 3332221 2 24889999999995
No 149
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=96.93 E-value=0.00072 Score=74.10 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=44.7
Q ss_pred cCccccchhHHHHHHhhhhc----CCCeEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCC
Q 009060 436 MQYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNG 494 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~----p~r~vv~i~GDGsf~~~--~~eL~ta~~~~lpi~ivV~NN~ 494 (545)
.+.|++|.+|++|+|.|+|. .+.+|++++|||.+.=. ...+..|.+++-|+++||-+|+
T Consensus 174 ~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~ 238 (641)
T PLN02234 174 FGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNK 238 (641)
T ss_pred ECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCC
Confidence 46799999999999998875 35689999999998753 4457777776767666555554
No 150
>PRK05261 putative phosphoketolase; Provisional
Probab=96.92 E-value=0.0013 Score=73.19 Aligned_cols=86 Identities=19% Similarity=0.257 Sum_probs=59.8
Q ss_pred CccccchhHHHHHHhhhhcCCCeEEEEEcchhhccc-HHHHHHHH----HhCCCeEEEEEeCCchhhhhhhcCCCC--CC
Q 009060 437 QYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT-AQEISTMI----RCGQRSIIFLINNGGYTIEVEIHDGPY--NV 509 (545)
Q Consensus 437 ~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~-~~eL~ta~----~~~lpi~ivV~NN~~~g~~~~~~~~~~--~~ 509 (545)
..|.+|++++.|+|+++..++..|+|++|||.+.=. +...|-+. .+++.-++.|+++++|.+ .++- ..
T Consensus 140 ~~G~LG~gls~A~G~Al~~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~Ng~~I-----s~pt~~~~ 214 (785)
T PRK05261 140 EGGELGYSLSHAYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKI-----ANPTILAR 214 (785)
T ss_pred CCCchhhHHHHHHHHHHcCCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEecCCcC-----CCCccccc
Confidence 468999999999999999999999999999994332 22234432 234555566666777888 2221 11
Q ss_pred CCCCCHHHHHHHcCCCCC
Q 009060 510 IKNWDYTGLVNAIHNGEG 527 (545)
Q Consensus 510 l~~~d~~~lA~a~G~~~~ 527 (545)
...-++.+..++||.+..
T Consensus 215 ~~~e~l~~rf~g~Gw~~i 232 (785)
T PRK05261 215 ISDEELEALFRGYGYEPY 232 (785)
T ss_pred cCcHhHHHHHHHCCCeeE
Confidence 233578888999988743
No 151
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=96.86 E-value=0.0024 Score=67.37 Aligned_cols=65 Identities=23% Similarity=0.387 Sum_probs=53.4
Q ss_pred eccCccccchhHHHHHHhhhhcC-----CCeEEEEEcchhhccc-HHH-HHHHHHhCCCeEEEEEeCCchhh
Q 009060 434 FQMQYGSIGWSVGATLGYAQAAK-----DKRVIACIGDGSFQVT-AQE-ISTMIRCGQRSIIFLINNGGYTI 498 (545)
Q Consensus 434 ~~~~~g~mG~~l~aAiGaala~p-----~r~vv~i~GDGsf~~~-~~e-L~ta~~~~lpi~ivV~NN~~~g~ 498 (545)
...+.|.+|.+|+.|+|.|.+.. +-+|+|++|||..+=. ..| ...|..++++-+|++++|+..++
T Consensus 113 v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~ 184 (632)
T KOG0523|consen 113 VEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISI 184 (632)
T ss_pred ceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEccccccC
Confidence 34466999999999999987642 5689999999998764 344 66788999999999999998887
No 152
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=96.60 E-value=0.0029 Score=70.00 Aligned_cols=60 Identities=25% Similarity=0.344 Sum_probs=47.5
Q ss_pred cCccccchhHHHHHHhhhhc----CCCeEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCc
Q 009060 436 MQYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGG 495 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~----p~r~vv~i~GDGsf~~~--~~eL~ta~~~~lpi~ivV~NN~~ 495 (545)
.+.|++|.+++.|+|.++|. .++.|++++|||++.=. ...|..+..+++|+++||-||+.
T Consensus 141 ~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~~ 206 (677)
T PLN02582 141 FGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQ 206 (677)
T ss_pred eccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhHHHHHHHHHhhCcCEEEEEECCCC
Confidence 45688999999999998874 46789999999999763 44577788889997776666653
No 153
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=96.46 E-value=0.011 Score=66.27 Aligned_cols=85 Identities=22% Similarity=0.229 Sum_probs=64.3
Q ss_pred cCccccchhHHHHHHhhhhc-----------CCCeEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhhhhh
Q 009060 436 MQYGSIGWSVGATLGYAQAA-----------KDKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIEVEI 502 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~-----------p~r~vv~i~GDGsf~~~--~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~ 502 (545)
...|+||.|++.|+|.|++. .+++|+|++|||-+.=. ...+..|.+++|+=+|+|+|++...+
T Consensus 186 ~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~ql---- 261 (885)
T TIGR00759 186 FPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRL---- 261 (885)
T ss_pred eCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCcc----
Confidence 35699999999999988753 35789999999998763 44577789999987788888887766
Q ss_pred cCCCCCCC-C-CCCHHHHHHHcCCC
Q 009060 503 HDGPYNVI-K-NWDYTGLVNAIHNG 525 (545)
Q Consensus 503 ~~~~~~~l-~-~~d~~~lA~a~G~~ 525 (545)
+++-... . .-++++.-+++|+.
T Consensus 262 -DG~v~~~~~i~e~le~~F~a~GW~ 285 (885)
T TIGR00759 262 -DGPVRGNGKIIQELESLFRGAGWN 285 (885)
T ss_pred -CCccccccccchhHHHHHHhcCCE
Confidence 3332222 1 23788999999985
No 154
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=96.26 E-value=0.0027 Score=72.32 Aligned_cols=93 Identities=17% Similarity=0.064 Sum_probs=59.8
Q ss_pred ccccchhHHHHHHhhhhc----CC------CeEEEEEcchhhc--ccHHH-HHHHHHhCCC---eEEEEEeCCchhhhhh
Q 009060 438 YGSIGWSVGATLGYAQAA----KD------KRVIACIGDGSFQ--VTAQE-ISTMIRCGQR---SIIFLINNGGYTIEVE 501 (545)
Q Consensus 438 ~g~mG~~l~aAiGaala~----p~------r~vv~i~GDGsf~--~~~~e-L~ta~~~~lp---i~ivV~NN~~~g~~~~ 501 (545)
.+.+|...|-++|+++|. .+ .-+|++.|||+|. =...| |..+.-.++| +++||.||+ |++...
T Consensus 313 pShleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq-~g~tT~ 391 (924)
T PRK09404 313 PSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQ-IGFTTS 391 (924)
T ss_pred ccccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC-EEEeeC
Confidence 366788889999988874 23 4578899999982 23445 4445566887 777777765 887110
Q ss_pred hcCCCCCCCCCCCHHHHHHHcCCCCCceeEEEEe
Q 009060 502 IHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVS 535 (545)
Q Consensus 502 ~~~~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~ 535 (545)
... .-...+..++|++||++..+|++.++.
T Consensus 392 ~~~----~~s~~~~sd~Ak~~giP~~~VDG~D~~ 421 (924)
T PRK09404 392 PPD----DRSTPYCTDVAKMVQAPIFHVNGDDPE 421 (924)
T ss_pred HHH----hccchhHHHHHeecCCcEEEEcCCCHH
Confidence 000 012335678899999987666555443
No 155
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=96.05 E-value=0.027 Score=64.00 Aligned_cols=85 Identities=21% Similarity=0.299 Sum_probs=64.7
Q ss_pred cCccccchhHHHHHHhhhhcC-----------CCeEEEEEcchhhcc--cHHHHHHHHHhCCCeEEEEEeCCchhhhhhh
Q 009060 436 MQYGSIGWSVGATLGYAQAAK-----------DKRVIACIGDGSFQV--TAQEISTMIRCGQRSIIFLINNGGYTIEVEI 502 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p-----------~r~vv~i~GDGsf~~--~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~ 502 (545)
...|+||.|++.|+|.++... +++|+|++|||-+.= +...+..|.+++|+=+|+|+|++...+
T Consensus 200 ~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~l---- 275 (896)
T PRK13012 200 FPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRL---- 275 (896)
T ss_pred cCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccc----
Confidence 456999999999999988743 378999999999876 345577889999987788888776665
Q ss_pred cCCCCCCCCC--CCHHHHHHHcCCC
Q 009060 503 HDGPYNVIKN--WDYTGLVNAIHNG 525 (545)
Q Consensus 503 ~~~~~~~l~~--~d~~~lA~a~G~~ 525 (545)
+++-..... -++++.-+++|++
T Consensus 276 -DG~v~~~~~~~~~l~~~f~a~GW~ 299 (896)
T PRK13012 276 -DGPVRGNGRIIQELEALFRGAGWN 299 (896)
T ss_pred -cCccccccccchHHHHHHHhCCCE
Confidence 343222211 3889999999985
No 156
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=95.96 E-value=0.0096 Score=63.37 Aligned_cols=65 Identities=26% Similarity=0.429 Sum_probs=46.5
Q ss_pred EeccCccccchhHHHHHHhhhh----cCCCeEEEEEcchhh--cccHHHHHHHH-HhCCCeEEEEEeCCchhh
Q 009060 433 EFQMQYGSIGWSVGATLGYAQA----AKDKRVIACIGDGSF--QVTAQEISTMI-RCGQRSIIFLINNGGYTI 498 (545)
Q Consensus 433 ~~~~~~g~mG~~l~aAiGaala----~p~r~vv~i~GDGsf--~~~~~eL~ta~-~~~lpi~ivV~NN~~~g~ 498 (545)
+...+.|.-+.+|++|+|.+.| ..++.||+++|||++ .|....|..+. ..+-| .+||+||+...|
T Consensus 109 ~D~f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~ag~~~~~~-~iVILNDNeMSI 180 (627)
T COG1154 109 HDWFGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAGADLKSN-LIVILNDNEMSI 180 (627)
T ss_pred CcccccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhhhhccCCC-EEEEEeCCCccc
Confidence 3344556677789999998876 357889999999987 45566677765 32345 566778887777
No 157
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=95.93 E-value=0.47 Score=42.72 Aligned_cols=149 Identities=18% Similarity=0.118 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhc-CCCCeEE-ecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHH
Q 009060 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA-EPELNLV-GCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (545)
Q Consensus 29 ~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~-~~~i~~i-~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (545)
.++.|.+.+++..= .++.-..-.....++.+.+ .++ |++ ....|++.+.+|.|.|.. | ..++.+. ..=...++
T Consensus 3 ~~~~l~~~~~~~~~-~v~~~~Dl~~~~~~~~~~~~~p~-r~i~~gIaE~~~vg~A~GlA~~-G~~pi~~~~-~~f~~ra~ 78 (156)
T cd07033 3 FGEALLELAKKDPR-IVALSADLGGSTGLDKFAKKFPD-RFIDVGIAEQNMVGIAAGLALH-GLKPFVSTF-SFFLQRAY 78 (156)
T ss_pred HHHHHHHHHhhCCC-EEEEECCCCCCCCcHHHHHhCCC-CeEEeChhHHHHHHHHHHHHHC-CCeEEEEEC-HHHHHHHH
Confidence 35666666666533 3332222111122333322 233 555 477999999999999965 7 5555544 44455667
Q ss_pred HHHH-HhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeE-EEEeCChhhHHHHHHHHHHHhhhCC
Q 009060 106 NAIA-GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKES 183 (545)
Q Consensus 106 ~~l~-~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~a~~~~ 183 (545)
..|. .+-..+.|++++....... .+.+...|| ..++..+++.+-.. ...+.+++++..+++.|++ .+
T Consensus 79 dqi~~~~a~~~~pv~~~~~~~g~~-~~~~G~tH~------~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~----~~ 147 (156)
T cd07033 79 DQIRHDVALQNLPVKFVGTHAGIS-VGEDGPTHQ------GIEDIALLRAIPNMTVLRPADANETAAALEAALE----YD 147 (156)
T ss_pred HHHHHHHhccCCCeEEEEECCcEe-cCCCCcccc------hHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh----CC
Confidence 7777 6777899999998754332 112222333 23557788877432 3556667777666666554 46
Q ss_pred CcEEEEeCC
Q 009060 184 KPVYISISC 192 (545)
Q Consensus 184 GPV~l~iP~ 192 (545)
+|++|.+|.
T Consensus 148 ~P~~irl~~ 156 (156)
T cd07033 148 GPVYIRLPR 156 (156)
T ss_pred CCEEEEeeC
Confidence 799999873
No 158
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=95.88 E-value=0.011 Score=65.12 Aligned_cols=108 Identities=15% Similarity=0.159 Sum_probs=71.0
Q ss_pred CcCHHHHHHHHHhhCC-CCCEEEecCCccccc-------ccccc---------ccCC-CeeEeccCccccchhHHHHHHh
Q 009060 390 PLRVNVLFKHIQDMLS-GDTAVIAETGDSWFN-------CQKLR---------LPEN-CGYEFQMQYGSIGWSVGATLGY 451 (545)
Q Consensus 390 ~~~~~~~~~~l~~~l~-~~~ivv~d~G~~~~~-------~~~~~---------~~~~-~~~~~~~~~g~mG~~l~aAiGa 451 (545)
.+..-++.-+|..++. +.+-++-|+|--.+. ...+. +|++ -+-+...+.|.-+.+|++|+|.
T Consensus 122 nLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HKiLTGR~~~f~~Rq~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~ 201 (701)
T PLN02225 122 SFAAIELTLALHYVFRAPVDNILWDAVEQTYAHKVLTRRWSAIPSRQKNGISGVTSQLESEYDSFGTGHGCNSISAGLGL 201 (701)
T ss_pred CccHHHHHHHHHHHhCCCCCceeeccccccchhhHhcCChhhcCccccCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Confidence 3666777778888774 344456688843221 00111 1111 0223344556777799999999
Q ss_pred hhhc----CCCeEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhh
Q 009060 452 AQAA----KDKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTI 498 (545)
Q Consensus 452 ala~----p~r~vv~i~GDGsf~--~~~~eL~ta~~~~lpi~ivV~NN~~~g~ 498 (545)
+.|+ .++.||+|+|||++. |....|-.+...+-| ++||+||+.+.+
T Consensus 202 a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~-livILNDN~mSi 253 (701)
T PLN02225 202 AVARDIKGKRDRVVAVIDNATITAGQAYEAMSNAGYLDSN-MIVILNDSRHSL 253 (701)
T ss_pred HHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhhhhccCCC-EEEEEeCCCCCC
Confidence 8874 467899999999985 556678888887877 566778877887
No 159
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=95.88 E-value=0.008 Score=59.03 Aligned_cols=62 Identities=23% Similarity=0.220 Sum_probs=45.5
Q ss_pred cCccccchhHHHHHHhhhhcC----CCeEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhh
Q 009060 436 MQYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTI 498 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p----~r~vv~i~GDGsf~~~--~~eL~ta~~~~lpi~ivV~NN~~~g~ 498 (545)
++.|-.|..+|.+.|+++|.. +.-++++-|||+..-. ...+..|.-.+||+++|+ -|+.|||
T Consensus 162 GGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvC-ENN~yGM 229 (394)
T KOG0225|consen 162 GGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVC-ENNHYGM 229 (394)
T ss_pred CccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEE-ccCCCcc
Confidence 577888889999999988843 4568889999998653 223555666699976655 4555999
No 160
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=95.79 E-value=0.04 Score=62.43 Aligned_cols=85 Identities=26% Similarity=0.288 Sum_probs=64.8
Q ss_pred cCccccchhHHHHHHhhhhcC-----------CCeEEEEEcchhhcc--cHHHHHHHHHhCCCeEEEEEeCCchhhhhhh
Q 009060 436 MQYGSIGWSVGATLGYAQAAK-----------DKRVIACIGDGSFQV--TAQEISTMIRCGQRSIIFLINNGGYTIEVEI 502 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p-----------~r~vv~i~GDGsf~~--~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~ 502 (545)
...|+||.|++.|+|.++... +++|+|++|||-+.= +...+..|.+++|+=+|+|+|.+...+
T Consensus 192 ~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~l---- 267 (891)
T PRK09405 192 FPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRL---- 267 (891)
T ss_pred cCccccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCccc----
Confidence 346899999999999988765 688999999999876 345578889999987778888776665
Q ss_pred cCCCCCCC-C-CCCHHHHHHHcCCC
Q 009060 503 HDGPYNVI-K-NWDYTGLVNAIHNG 525 (545)
Q Consensus 503 ~~~~~~~l-~-~~d~~~lA~a~G~~ 525 (545)
+++-... . .-++++.-++||+.
T Consensus 268 -DG~v~~~~~~~~~l~~~f~a~GW~ 291 (891)
T PRK09405 268 -DGPVRGNGKIIQELEGIFRGAGWN 291 (891)
T ss_pred -CCccccccccchhHHHHHhhCCCE
Confidence 3332221 1 23888999999985
No 161
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=95.76 E-value=0.028 Score=60.35 Aligned_cols=63 Identities=22% Similarity=0.320 Sum_probs=52.3
Q ss_pred cCccccchhHHHHHHhhhhc---------C-----CCeEEEEEcchhhccc-HHH-HHHHHHhCCCeEEEEEeCCchhh
Q 009060 436 MQYGSIGWSVGATLGYAQAA---------K-----DKRVIACIGDGSFQVT-AQE-ISTMIRCGQRSIIFLINNGGYTI 498 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~---------p-----~r~vv~i~GDGsf~~~-~~e-L~ta~~~~lpi~ivV~NN~~~g~ 498 (545)
...|.+|.|++.|+|.++|. | |..+.|++|||++|=. .+| ..-|..++|.=.|++++++...+
T Consensus 113 ~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~Isi 191 (663)
T COG0021 113 ATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISI 191 (663)
T ss_pred eccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCcee
Confidence 35699999999999999873 1 4689999999999875 344 55577999998999999998888
No 162
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=95.75 E-value=0.046 Score=54.46 Aligned_cols=87 Identities=29% Similarity=0.338 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh
Q 009060 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l 300 (545)
.+++++++++.|.+||||+++-+... ..++.+.-.+|+|++|+-+=.+.. -. .-|..+|....-......-+.-
T Consensus 65 ~deAie~Aa~ILv~aKrPllyg~s~t-scEA~~~gielaE~~gaviD~~as-vc----hGp~~~alqe~g~p~~TlgevK 138 (429)
T COG1029 65 YDEAIEKAAEILVNAKRPLLYGWSST-SCEAQELGIELAEKLGAVIDSNAS-VC----HGPSVLALQEAGKPTATLGEVK 138 (429)
T ss_pred HHHHHHHHHHHHHhccCceEeccccc-hHHHHHHHHHHHHHhCcEecCCCc-cc----cchHHHHHHhcCCcccchhhhc
Confidence 57789999999999999999966544 347888889999999986522211 00 1133333221111111223445
Q ss_pred hcCCEEEEeCCCC
Q 009060 301 ESADAYVFVGPIF 313 (545)
Q Consensus 301 ~~aD~vl~lG~~~ 313 (545)
..+|+|+..|+..
T Consensus 139 NraDviVyWGtNP 151 (429)
T COG1029 139 NRADVIVYWGTNP 151 (429)
T ss_pred ccccEEEEeCCCc
Confidence 6899999999874
No 163
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=95.54 E-value=0.0098 Score=67.60 Aligned_cols=97 Identities=15% Similarity=0.085 Sum_probs=61.9
Q ss_pred eccCccccchhHHHHHHhhhhcC----------CCeEEEEEcchhh-cc-cHHH-HHHHHHhCCCe--EEEEEeCCchhh
Q 009060 434 FQMQYGSIGWSVGATLGYAQAAK----------DKRVIACIGDGSF-QV-TAQE-ISTMIRCGQRS--IIFLINNGGYTI 498 (545)
Q Consensus 434 ~~~~~g~mG~~l~aAiGaala~p----------~r~vv~i~GDGsf-~~-~~~e-L~ta~~~~lpi--~ivV~NN~~~g~ 498 (545)
...+-+.++.-.|-++|.+.|.. +.-+|++.|||+| .- ...| |..+.-.++|+ +|+|+.|++|++
T Consensus 310 l~~npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~ 389 (929)
T TIGR00239 310 LAFNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGF 389 (929)
T ss_pred ecCCCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEE
Confidence 34556788999999999888742 2456889999998 32 3444 55566779998 455555556998
Q ss_pred hhhhcCCCCCCCCCCCHHHHHHHcCCCCCceeEEEE
Q 009060 499 EVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKV 534 (545)
Q Consensus 499 ~~~~~~~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v 534 (545)
...... .-......+.|++||++..+|++.++
T Consensus 390 tT~~~~----~~s~~~~sd~Ak~ygiP~~~VDG~D~ 421 (929)
T TIGR00239 390 TTNPLD----ARSTPYCSDLAKMIQAPIFHVNADDP 421 (929)
T ss_pred EEcHHH----hcCccCHHHHheecCCCEEEECCCCH
Confidence 110000 01223566788888888665555543
No 164
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=95.07 E-value=0.65 Score=43.56 Aligned_cols=113 Identities=18% Similarity=0.069 Sum_probs=73.1
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCccccc------ccC-CCChHH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHH------TIG-LPDFTQ 147 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~------~~~-~~~~~d 147 (545)
+.-+|.|.+.+.. +.+|++--| ++.-.+..|..|...++|+++|.-+......-+ ..|. ..+ .....|
T Consensus 58 ~lpaaiGa~la~p~r~vv~i~GDG-~f~m~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~--~~q~~~~~~~~~~~~~~~~d 134 (196)
T cd02013 58 ALPAIIGAKAAAPDRPVVAIAGDG-AWGMSMMEIMTAVRHKLPVTAVVFRNRQWGAEK--KNQVDFYNNRFVGTELESES 134 (196)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcch-HHhccHHHHHHHHHhCCCeEEEEEECchhHHHH--HHHHHHcCCCcccccCCCCC
Confidence 4558888776654 556654433 333346889999999999999995543321100 0000 000 011245
Q ss_pred HHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 148 ~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
...+.+.+-....++++++++...+++|+..+. ..||+.|++..|
T Consensus 135 ~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~-~~~p~liev~v~ 179 (196)
T cd02013 135 FAKIAEACGAKGITVDKPEDVGPALQKAIAMMA-EGKTTVIEIVCD 179 (196)
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHHHHhcCC-CCCeEEEEEEeC
Confidence 677888887778899999998888888775432 478999999987
No 165
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=94.81 E-value=0.26 Score=58.59 Aligned_cols=69 Identities=13% Similarity=0.180 Sum_probs=53.2
Q ss_pred CeEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhh---hhhhc--CC------CC-CCCCCCCHHHHHHHcCC
Q 009060 458 KRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTI---EVEIH--DG------PY-NVIKNWDYTGLVNAIHN 524 (545)
Q Consensus 458 r~vv~i~GDG-sf~~~~~eL~ta~~~~lpi~ivV~NN~~~g~---~~~~~--~~------~~-~~l~~~d~~~lA~a~G~ 524 (545)
+.|+++.||| ++-...+.|.-+.+.|.+|++||+||..|+. |.-.. .+ +. ...+.-|...+|.++|.
T Consensus 952 ~sv~~~~GDG~~~diG~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~g~ 1031 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGYGGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTYGY 1031 (1165)
T ss_pred ceeEEEecchhhhccCccchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHCCC
Confidence 4799999999 6677889999999999999999999999998 11100 01 11 12356799999999998
Q ss_pred CC
Q 009060 525 GE 526 (545)
Q Consensus 525 ~~ 526 (545)
.|
T Consensus 1032 ~y 1033 (1165)
T TIGR02176 1032 VY 1033 (1165)
T ss_pred CE
Confidence 73
No 166
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=94.63 E-value=6.3 Score=40.63 Aligned_cols=163 Identities=17% Similarity=0.093 Sum_probs=92.3
Q ss_pred CCccc-CCCCccHHHHHHHHHHHcCCC--EEEecCCCCh-----HHHHHhhhcCC-CCeEE-ecCchhHHHHHHhHHhhh
Q 009060 18 APVRG-GASVGTLGRHLARRLVEIGAK--DVFSVPGDFN-----LTLLDHLIAEP-ELNLV-GCCNELNAGYAADGYARS 87 (545)
Q Consensus 18 ~~~~~-~~~~~~~a~~i~~~L~~~GV~--~vFg~pG~~~-----~~l~~al~~~~-~i~~i-~~~hE~~A~~~A~gyar~ 87 (545)
+++.+ .|.+++..+++.+.|.+..-+ .++.+.++.- ...++.+.+.- -=|++ ....|++++.+|.|+|..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~ 104 (355)
T PTZ00182 25 STESKGATVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMN 104 (355)
T ss_pred cccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhC
Confidence 34444 467788888888888876543 4555554432 33355555432 13455 467999999999999995
Q ss_pred cC-ceEEEEcCCcchHHHHHHHHH--hHh-------cCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhcee
Q 009060 88 RG-VGACVVTFTVGGLSVLNAIAG--AYS-------ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITC 157 (545)
Q Consensus 88 tg-~gv~~~t~GpG~~n~~~~l~~--A~~-------~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k 157 (545)
| ..++.....+=+..++.-|.+ |+. -++||+++...-.. +.+...|+ +..+ .+++.+-.
T Consensus 105 -G~~Pvv~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~---g~~G~tHs-----~~~e--a~lr~iPn 173 (355)
T PTZ00182 105 -GLRPIAEFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAV---GHGGAYHS-----QSFE--AYFAHVPG 173 (355)
T ss_pred -CCEEEEEechhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCC---CCCCCccc-----chHH--HHHhcCCC
Confidence 7 555543323222333333322 333 36888876432111 21112231 1122 77777643
Q ss_pred E-EEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCCC
Q 009060 158 S-QAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195 (545)
Q Consensus 158 ~-~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv~ 195 (545)
. ...+.++.++..+++.|++ .++|++|..|..+.
T Consensus 174 ~~V~~Psd~~e~~~~l~~a~~----~~~P~~i~~p~~l~ 208 (355)
T PTZ00182 174 LKVVAPSDPEDAKGLLKAAIR----DPNPVVFFEPKLLY 208 (355)
T ss_pred CEEEeeCCHHHHHHHHHHHHh----CCCcEEEEeehHHh
Confidence 3 2455567777666666554 47999998776543
No 167
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=94.61 E-value=0.11 Score=46.46 Aligned_cols=119 Identities=18% Similarity=0.073 Sum_probs=73.2
Q ss_pred CCeEEec---CchhHHHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccc
Q 009060 65 ELNLVGC---CNELNAGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHT 139 (545)
Q Consensus 65 ~i~~i~~---~hE~~A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~ 139 (545)
.-+++.. -.=..+.-+|.|.+.+.. +.+|++--| ++.-.++.|..|...++|+++|.-+......-+. .++.
T Consensus 18 p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG-~f~~~~~el~ta~~~~~~v~~vv~nN~~~~~~~~--~~~~ 94 (153)
T PF02775_consen 18 PRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDG-SFLMSLQELATAVRYGLPVVIVVLNNGGYGMTGG--QQTP 94 (153)
T ss_dssp TTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHH-HHHHHGGGHHHHHHTTSSEEEEEEESSBSHHHHH--HHHH
T ss_pred CCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCc-ceeeccchhHHHhhccceEEEEEEeCCcceEecc--cccc
Confidence 3455542 233456678888888753 556655333 3444489999999999999999987544311100 0000
Q ss_pred cCC----------CChHHHHHHhhhceeEEEEeCCh--hhHHHHHHHHHHHhhhCCCcEEEEe
Q 009060 140 IGL----------PDFTQELRCFQAITCSQAVVNNL--GDAHELIDTAISTALKESKPVYISI 190 (545)
Q Consensus 140 ~~~----------~~~~d~~~~~~~~~k~~~~v~~~--~~~~~~l~~A~~~a~~~~GPV~l~i 190 (545)
.+. ....|...+.+.+--...+++++ +++.+.+++|+ ..+||+.|++
T Consensus 95 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~----~~~gp~vIeV 153 (153)
T PF02775_consen 95 FGGGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREAL----ESGGPAVIEV 153 (153)
T ss_dssp TTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH----HSSSEEEEEE
T ss_pred CcCcccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH----hCCCcEEEEc
Confidence 000 11235677888885557788887 66666665555 6789999986
No 168
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=94.54 E-value=0.79 Score=43.17 Aligned_cols=114 Identities=11% Similarity=0.022 Sum_probs=73.6
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccc----------cC---
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHT----------IG--- 141 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~----------~~--- 141 (545)
+.-+|.|.+.+.. +.||++--| ++.=.+..|..|...++|+++|.-+-.....-+. .|.. ..
T Consensus 62 ~lpaaiGa~la~p~~~vv~i~GDG-~f~m~~~eL~Ta~~~~lpviivV~NN~~yg~~~~--~q~~~~~~~~~~~~~~~~~ 138 (202)
T cd02006 62 TVPAALGVAAADPDRQVVALSGDY-DFQFMIEELAVGAQHRIPYIHVLVNNAYLGLIRQ--AQRAFDMDYQVNLAFENIN 138 (202)
T ss_pred hhHHHHhHHhhCCCCeEEEEEeCh-HhhccHHHHHHHHHhCCCeEEEEEeCchHHHHHH--HHHHhcCcccccccccccc
Confidence 4447778666653 455554333 2333347888999999999999977553311110 0000 00
Q ss_pred ----CCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 142 ----LPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 142 ----~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
.....|..++.+.+-....++++++++.+.+++|+.......+|+.|++..|
T Consensus 139 ~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~~p~liev~i~ 194 (202)
T cd02006 139 SSELGGYGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVEAILE 194 (202)
T ss_pred ccccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEEEEec
Confidence 0001456778888877789999999998888888876544578999999877
No 169
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=94.46 E-value=0.27 Score=44.98 Aligned_cols=110 Identities=19% Similarity=0.112 Sum_probs=66.6
Q ss_pred HHHHHHhHHhhhcC--ceEEEEcCCcchHH-HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccc-------c-CCCC
Q 009060 76 NAGYAADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHT-------I-GLPD 144 (545)
Q Consensus 76 ~A~~~A~gyar~tg--~gv~~~t~GpG~~n-~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~-------~-~~~~ 144 (545)
.+.-+|.|.+.... +.+|++ |=|... ....+..|...++|+++|.-+.......+. .++. . ....
T Consensus 52 ~~lp~AiGa~la~~~~~vv~i~--GDG~f~~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~--~~~~~~~~~~~~~~~~~ 127 (172)
T cd02004 52 VGLGYAIAAALARPDKRVVLVE--GDGAFGFSGMELETAVRYNLPIVVVVGNNGGWYQGLD--GQQLSYGLGLPVTTLLP 127 (172)
T ss_pred chHHHHHHHHHhCCCCeEEEEE--cchhhcCCHHHHHHHHHcCCCEEEEEEECcccccchh--hhhhhccCCCceeccCC
Confidence 35557778766653 455554 444444 468899999999998888866432211110 0000 0 0001
Q ss_pred hHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 145 FTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 145 ~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
..|...+++.+--...++++++++.+. ++.+...+||+.|++..|
T Consensus 128 ~~d~~~la~a~G~~~~~v~~~~el~~a----l~~a~~~~~p~liev~i~ 172 (172)
T cd02004 128 DTRYDLVAEAFGGKGELVTTPEELKPA----LKRALASGKPALINVIID 172 (172)
T ss_pred CCCHHHHHHHCCCeEEEECCHHHHHHH----HHHHHHcCCCEEEEEEcC
Confidence 235567888886677888887665544 444555689999998764
No 170
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=94.04 E-value=1.5 Score=39.80 Aligned_cols=114 Identities=17% Similarity=0.129 Sum_probs=70.9
Q ss_pred eEE-ecCchhHHHHHHhHHhhhcCceEEEEcCCcchHHHHHHHHHhHhc-CCcEEEEeCC-CCCcccCCCcccccccCCC
Q 009060 67 NLV-GCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSE-NLPVICIVGG-PNSNDYGTNRILHHTIGLP 143 (545)
Q Consensus 67 ~~i-~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~~~l~~A~~~-~~Pllvi~g~-~~~~~~~~~~~~~~~~~~~ 143 (545)
|++ ....|++.+.+|.|+|....+.++. +..+-...+...+..+-.. ++|+|+.... .. .+.+...||
T Consensus 50 R~~~~gIaE~~~vg~a~GlA~~G~~pi~~-~~~~f~~~a~~~~~~~~~~~~~~~v~~~~~g~~---~g~~G~tH~----- 120 (168)
T smart00861 50 RVIDTGIAEQAMVGFAAGLALAGLRPVVA-IFFTFFDRAKDQIRSDGAMGRVPVVVRHDSGGG---VGEDGPTHH----- 120 (168)
T ss_pred cEEEcCcCHHHHHHHHHHHHHcCCCcEEE-eeHHHHHHHHHHHHHhCcccCCCEEEEecCccc---cCCCCcccc-----
Confidence 355 4789999999999999985433333 4455444555555554444 4776665521 22 122111233
Q ss_pred ChHHHHHHhhhcee-EEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 144 DFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 144 ~~~d~~~~~~~~~k-~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
..++..+++.+-. ....+.+++++..+++.+++ ...+|++|.++..
T Consensus 121 -~~~~~~~~~~iP~~~v~~P~~~~e~~~~l~~a~~---~~~~p~~i~~~~~ 167 (168)
T smart00861 121 -SQEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIR---RDDGPPVIRLERK 167 (168)
T ss_pred -chhHHHHHhcCCCcEEEecCCHHHHHHHHHHHHh---CCCCCEEEEecCC
Confidence 3356778887653 34677788888888888772 2368999998753
No 171
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=93.94 E-value=2.3 Score=39.28 Aligned_cols=108 Identities=14% Similarity=0.008 Sum_probs=64.7
Q ss_pred HHHhHHhhhcC--ceEEEEcCCcc-hHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCccccc---ccCCCChHHHHHHh
Q 009060 79 YAADGYARSRG--VGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHH---TIGLPDFTQELRCF 152 (545)
Q Consensus 79 ~~A~gyar~tg--~gv~~~t~GpG-~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~ 152 (545)
-+|.|.+.++. +.+|++ |=| +.-.++.+..|...++|+++|.-+.......+. .|. ........|...++
T Consensus 57 ~~aiGaala~~~~~vv~i~--GDG~f~~~~~el~ta~~~~~p~~ivV~nN~~~~~~~~--~~~~~~~~~~~~~~d~~~ia 132 (183)
T cd02005 57 PAALGAALAAPDRRVILLV--GDGSFQMTVQELSTMIRYGLNPIIFLINNDGYTIERA--IHGPEASYNDIANWNYTKLP 132 (183)
T ss_pred HHHHHHHHhCCCCeEEEEE--CCchhhccHHHHHHHHHhCCCCEEEEEECCCcEEEEE--eccCCcCcccCCCCCHHHHH
Confidence 45667666654 444443 433 333456788899999999998876554321110 000 00000113456677
Q ss_pred hhce----eEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 153 QAIT----CSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 153 ~~~~----k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
+.+- -+..++.+++++.+.+++|++ +.+||+.|++..|
T Consensus 133 ~a~G~~~~~~~~~v~~~~el~~al~~a~~---~~~~p~liev~~~ 174 (183)
T cd02005 133 EVFGGGGGGLSFRVKTEGELDEALKDALF---NRDKLSLIEVILP 174 (183)
T ss_pred HHhCCCccccEEEecCHHHHHHHHHHHHh---cCCCcEEEEEEcC
Confidence 7764 456788888888776666664 2579999999877
No 172
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=93.19 E-value=6.3 Score=35.86 Aligned_cols=147 Identities=16% Similarity=0.123 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCCh----HHHHHhhhc-CCCCeEEe-cCchhHHHHHHhHHhhhcC-ceEEEEcCCcch
Q 009060 29 LGRHLARRLVEIGAKDVFSVPGDFN----LTLLDHLIA-EPELNLVG-CCNELNAGYAADGYARSRG-VGACVVTFTVGG 101 (545)
Q Consensus 29 ~a~~i~~~L~~~GV~~vFg~pG~~~----~~l~~al~~-~~~i~~i~-~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~ 101 (545)
..+.|.+.+++. -+.++.-..... ....+.+.+ .++.|++. ...|++.+.+|.|+|+. | ..++..+..+=+
T Consensus 3 ~~~~l~~~~~~~-~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~-G~~pi~~~~~a~Fl 80 (167)
T cd07036 3 INEALDEEMERD-PRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMN-GLRPIVEIMFADFA 80 (167)
T ss_pred HHHHHHHHHhcC-CCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHc-CCEEEEEeehHHHH
Confidence 456666665544 344443333211 235566654 35568885 67999999999999996 6 555544555544
Q ss_pred HHHHHHHHH--hHhc-------CCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEE-EEeCChhhHHHH
Q 009060 102 LSVLNAIAG--AYSE-------NLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHEL 171 (545)
Q Consensus 102 ~n~~~~l~~--A~~~-------~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~ 171 (545)
..++.-+.. |+.+ +.||+++...-... +-+. +|.. .+ ..+++.+-... ..+.+++++..+
T Consensus 81 ~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~--~~G~--ths~-----~~-~a~lr~iPg~~V~~Psd~~e~~~~ 150 (167)
T cd07036 81 LPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGI--GGGA--QHSQ-----SL-EAWFAHIPGLKVVAPSTPYDAKGL 150 (167)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCC--CcCh--hhhh-----hH-HHHHhcCCCCEEEeeCCHHHHHHH
Confidence 455554422 4443 58999887432211 1121 1211 23 57788774332 445666777666
Q ss_pred HHHHHHHhhhCCCcEEEEeC
Q 009060 172 IDTAISTALKESKPVYISIS 191 (545)
Q Consensus 172 l~~A~~~a~~~~GPV~l~iP 191 (545)
++.+++ .+||+.+--|
T Consensus 151 l~~~~~----~~~P~~~~e~ 166 (167)
T cd07036 151 LKAAIR----DDDPVIFLEH 166 (167)
T ss_pred HHHHHh----CCCcEEEEec
Confidence 666553 5699998766
No 173
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=93.15 E-value=1.6 Score=43.23 Aligned_cols=158 Identities=14% Similarity=-0.017 Sum_probs=87.2
Q ss_pred ccHHHHHHHHHHHcCCC---EEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC--ceEEEEcCCcch
Q 009060 27 GTLGRHLARRLVEIGAK---DVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG--VGACVVTFTVGG 101 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~---~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg--~gv~~~t~GpG~ 101 (545)
...-.+|-+.|.+.|++ .++...-+... ..-...+ ...+...| ..+.-+|.|...+.. +.++++--|-+.
T Consensus 16 ~~il~al~~al~~l~~~~~~~ivvsdiGc~~-~~~~~~~---~~~~~~~~-G~alp~A~GaklA~Pd~~VV~i~GDG~~f 90 (279)
T PRK11866 16 YGILEALRKALAELGIPPENVVVVSGIGCSS-NLPEFLN---TYGIHGIH-GRVLPIATGVKWANPKLTVIGYGGDGDGY 90 (279)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEECCchhh-hhhhhcc---CCCccccc-ccHHHHHHHHHHHCCCCcEEEEECChHHH
Confidence 34557788888888753 44444333332 2222211 23346666 666778889777764 555655444456
Q ss_pred HHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCccc------cc----ccCCCC-hHHHHHHhhhc-eeEEEEe--CChhh
Q 009060 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRIL------HH----TIGLPD-FTQELRCFQAI-TCSQAVV--NNLGD 167 (545)
Q Consensus 102 ~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~------~~----~~~~~~-~~d~~~~~~~~-~k~~~~v--~~~~~ 167 (545)
.-.++.+..|.+.++|+++|.-+......-+++.. +. ..+..+ -.|...+.+.+ +.+..+. .++++
T Consensus 91 ~ig~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~ 170 (279)
T PRK11866 91 GIGLGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKH 170 (279)
T ss_pred HccHHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHH
Confidence 67789999999999999998865432211110000 00 011000 02455666654 2233332 34444
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 168 AHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 168 ~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
+ .++++.|...+||++|++=..
T Consensus 171 l----~~~l~~Al~~~Gps~I~v~~p 192 (279)
T PRK11866 171 L----KEIIKEAIKHKGFSFIDVLSP 192 (279)
T ss_pred H----HHHHHHHHhCCCCEEEEEeCC
Confidence 4 555555556789999987544
No 174
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=92.91 E-value=0.28 Score=51.69 Aligned_cols=114 Identities=26% Similarity=0.315 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh
Q 009060 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l 300 (545)
.+++++.++++|+++++|+++ |.+.........+.+|++.+|..+- +.......+..+.+..+ |.... ...++.
T Consensus 56 WdeAl~~ia~~L~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~---g~~~~-~~~di~ 129 (415)
T cd02761 56 LEEAIEKAAEILKEAKRPLFY-GLGTTVCEAQRAGIELAEKLGAIID-HAASVCHGPNLLALQDS---GWPTT-TLGEVK 129 (415)
T ss_pred cHHHHHHHHHHHHhhcCCEEE-EcccchHHHHHHHHHHHHHHCCCcc-ccccccccchHHHHHhC---CCccc-cHHHHH
Confidence 577899999999999999887 4444333456778899999997432 22222222222222110 11111 122333
Q ss_pred hcCCEEEEeCCCCCCCccccc-c--c----C-----CCCCcEEEEcCCccee
Q 009060 301 ESADAYVFVGPIFNDYSSVGY-S--L----L-----IKKEKAIIVQPHRVTV 340 (545)
Q Consensus 301 ~~aD~vl~lG~~~~~~~~~~~-~--~----~-----~~~~~~i~id~d~~~~ 340 (545)
.++|+||++|+.+.+.....+ . . . .++.|+|.||+.....
T Consensus 130 ~~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~t 181 (415)
T cd02761 130 NRADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDT 181 (415)
T ss_pred hcCCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcch
Confidence 589999999988643322111 1 0 0 1345899998876544
No 175
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=92.84 E-value=1.2 Score=40.99 Aligned_cols=110 Identities=14% Similarity=0.024 Sum_probs=65.6
Q ss_pred HHHHhHHhhhcC--ceEEEEcCCcchHH--HHHHHHHhHhcCCcEEEEeCCCCCcccCCCccccc---c-cCCCChHHHH
Q 009060 78 GYAADGYARSRG--VGACVVTFTVGGLS--VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHH---T-IGLPDFTQEL 149 (545)
Q Consensus 78 ~~~A~gyar~tg--~gv~~~t~GpG~~n--~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~---~-~~~~~~~d~~ 149 (545)
.-+|.|.+.+.. +.++++ |=|... .+..|..|...++|+++|.-+......-+...... . .......|..
T Consensus 57 l~~AiGa~la~p~~~Vv~i~--GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~ 134 (178)
T cd02008 57 IGVAIGMAKASEDKKVVAVI--GDSTFFHSGILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDIE 134 (178)
T ss_pred HHHHhhHHhhCCCCCEEEEe--cChHHhhccHHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCHH
Confidence 345667666654 445553 444443 25788999999999999988755331111000000 0 0000113567
Q ss_pred HHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEe
Q 009060 150 RCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISI 190 (545)
Q Consensus 150 ~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~i 190 (545)
++++.+--...++.+++++.+ +.+|++.|...+||..|++
T Consensus 135 ~~a~a~G~~~~~v~~~~~l~~-~~~al~~a~~~~gp~lI~v 174 (178)
T cd02008 135 ALVRAIGVKRVVVVDPYDLKA-IREELKEALAVPGVSVIIA 174 (178)
T ss_pred HHHHHCCCCEEEecCccCHHH-HHHHHHHHHhCCCCEEEEE
Confidence 788888666788888888764 3455666666689998876
No 176
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=92.79 E-value=3.1 Score=46.67 Aligned_cols=116 Identities=21% Similarity=0.135 Sum_probs=76.6
Q ss_pred eEEe-cCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCC
Q 009060 67 NLVG-CCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (545)
Q Consensus 67 ~~i~-~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~ 144 (545)
++|. ..-|++++.+|.|+|+..| ..++ .|..+=+.-+...+..+...+.|++++....... .|.+...| |
T Consensus 397 rfi~~GIaEq~mv~~AaGlA~~gG~~p~~-~tf~~F~~r~~~~ir~~a~~~lpV~~v~th~g~~-~G~dG~TH------q 468 (653)
T TIGR00232 397 NYIHYGVREFAMGAIMNGIALHGGFKPYG-GTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIG-VGEDGPTH------Q 468 (653)
T ss_pred CeEeecccHHHHHHHHHHHHHcCCCeEEE-EEhHHHHHHHHHHHHHHHhcCCCEEEEEeCCccC-CCCCCccc------C
Confidence 6664 8899999999999999878 4444 4555544455677777788899999887543332 23222233 3
Q ss_pred hHHHHHHhhhcee-EEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 145 FTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 145 ~~d~~~~~~~~~k-~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
.+.++.+++.+-. ...++.++.++..+++.|++ ..+||++|.+|..
T Consensus 469 ~iedia~lr~iPn~~v~~PaD~~E~~~~~~~a~~---~~~gP~~irl~r~ 515 (653)
T TIGR00232 469 PIEQLASLRAIPNLSVWRPCDGNETAAAWKYALE---SQDGPTALILSRQ 515 (653)
T ss_pred CHHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh---cCCCcEEEEEcCC
Confidence 3556888887633 23555566666555554442 3479999999976
No 177
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=92.78 E-value=0.51 Score=44.60 Aligned_cols=146 Identities=12% Similarity=-0.034 Sum_probs=81.6
Q ss_pred EEEecCCCChHHHHHhhhcCCCCeEEecCch---hHHHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcE
Q 009060 44 DVFSVPGDFNLTLLDHLIAEPELNLVGCCNE---LNAGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPV 118 (545)
Q Consensus 44 ~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE---~~A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pl 118 (545)
.++.=.|.+...+...+.-...-+++....= .-+.-+|.|.+.+.. +.+|++--| ++.-....|..|...++|+
T Consensus 17 ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv 95 (205)
T cd02003 17 VVINAAGSLPGDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDG-SYLMLHSEIVTAVQEGLKI 95 (205)
T ss_pred EEEECCCcchHHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccc-hhhccHHHHHHHHHcCCCC
Confidence 3444445555555544432222455543221 223347777665553 455554333 3333456788899999999
Q ss_pred EEEeCCCCCcccCCC-------cccccccC-----------CCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhh
Q 009060 119 ICIVGGPNSNDYGTN-------RILHHTIG-----------LPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTAL 180 (545)
Q Consensus 119 lvi~g~~~~~~~~~~-------~~~~~~~~-----------~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~ 180 (545)
++|.-+......-+. ......+. .....|...+++.+--...++.+++++.+.+++|+
T Consensus 96 ~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~---- 171 (205)
T cd02003 96 IIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTIEELKAALAKAK---- 171 (205)
T ss_pred EEEEEECCccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEECCHHHHHHHHHHHH----
Confidence 888876543311000 00000000 00113567788888666788988888877666664
Q ss_pred hCCCcEEEEeCCCC
Q 009060 181 KESKPVYISISCNL 194 (545)
Q Consensus 181 ~~~GPV~l~iP~dv 194 (545)
..+||+.|++..|-
T Consensus 172 ~~~gp~lIeV~v~~ 185 (205)
T cd02003 172 ASDRTTVIVIKTDP 185 (205)
T ss_pred hCCCCEEEEEEeec
Confidence 45899999998873
No 178
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=92.68 E-value=0.78 Score=42.23 Aligned_cols=110 Identities=9% Similarity=-0.016 Sum_probs=66.3
Q ss_pred HHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCc---ccccccC-CCChHHHHHHh
Q 009060 79 YAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNR---ILHHTIG-LPDFTQELRCF 152 (545)
Q Consensus 79 ~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~---~~~~~~~-~~~~~d~~~~~ 152 (545)
-+|.|.+.+.. +.+|++--|. +.=....|..|...++|+++|.-+......-+.. ...+... +.+..|...+.
T Consensus 55 p~aiGa~la~~~~~vv~i~GDG~-f~m~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a 133 (177)
T cd02010 55 PGAIGAKLVYPDRKVVAVSGDGG-FMMNSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYA 133 (177)
T ss_pred HHHHHHHHhCCCCcEEEEEcchH-HHhHHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCcccCcCCCCCHHHHH
Confidence 36677666654 5666654333 2223467888999999999997654432110000 0000000 00113556777
Q ss_pred hhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 153 QAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 153 ~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
+.+--...++++++++.+.+++|+ ..+||..|+++.|
T Consensus 134 ~a~G~~~~~v~~~~el~~al~~a~----~~~~p~liev~~~ 170 (177)
T cd02010 134 ESFGAKGYRIESADDLLPVLERAL----AADGVHVIDCPVD 170 (177)
T ss_pred HHCCCEEEEECCHHHHHHHHHHHH----hCCCCEEEEEEec
Confidence 877666789998888776666665 4589999999987
No 179
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=92.54 E-value=1.2 Score=41.40 Aligned_cols=111 Identities=18% Similarity=0.113 Sum_probs=69.2
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCC--------CcccccccCCCChH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGT--------NRILHHTIGLPDFT 146 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~--------~~~~~~~~~~~~~~ 146 (545)
+.-+|.|.+.+.. +.+|++--| ++.-.+..|..|...++|++++.-+-.....-+ +.... .......
T Consensus 55 ~lp~aiGa~la~~~~~vv~i~GDG-~f~~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 131 (186)
T cd02015 55 GLPAAIGAKVARPDKTVICIDGDG-SFQMNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSH--TTLDSNP 131 (186)
T ss_pred hHHHHHHHHHhCCCCeEEEEEccc-HHhccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceee--ccCCCCC
Confidence 4457777666653 455554333 444456788889999999999887655321100 00000 0000113
Q ss_pred HHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 147 QELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 147 d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
|...+.+.+-....++++++++.+.+++|+ ..+||+.|++..|-
T Consensus 132 d~~~~a~a~G~~~~~v~~~~el~~al~~a~----~~~~p~liev~~~~ 175 (186)
T cd02015 132 DFVKLAEAYGIKGLRVEKPEELEAALKEAL----ASDGPVLLDVLVDP 175 (186)
T ss_pred CHHHHHHHCCCceEEeCCHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 567788888777889998777766666554 46899999999873
No 180
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=92.43 E-value=3.8 Score=37.56 Aligned_cols=123 Identities=15% Similarity=0.082 Sum_probs=72.7
Q ss_pred CeEEecCchh---HHHHHHhHHhhhcC-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCC-------c
Q 009060 66 LNLVGCCNEL---NAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN-------R 134 (545)
Q Consensus 66 i~~i~~~hE~---~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~-------~ 134 (545)
-+++..+.=. .+.-+|.|.+.+.. +.+|++--| ++.-.+..|..|...++|++++.-+-.....-+. .
T Consensus 42 ~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~GDG-sf~m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~ 120 (175)
T cd02009 42 VRVFANRGASGIDGTLSTALGIALATDKPTVLLTGDL-SFLHDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFED 120 (175)
T ss_pred ceEEecCCccchhhHHHHHHHHHhcCCCCEEEEEehH-HHHHhHHHHHhccccCCCeEEEEEECCCCchheeccCCcccc
Confidence 4555444322 34557788776655 666664333 2222368899999999999988876553211000 0
Q ss_pred ccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 135 ILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 135 ~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
............|..++.+.+--...++++++++.+.+++|++ ..+|+.|++..|
T Consensus 121 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~----~~~p~lIev~v~ 175 (175)
T cd02009 121 EFERLFGTPQGLDFEHLAKAYGLEYRRVSSLDELEQALESALA----QDGPHVIEVKTD 175 (175)
T ss_pred hhhhhhcCCCCCCHHHHHHHcCCCeeeCCCHHHHHHHHHHHHh----CCCCEEEEEeCC
Confidence 0000000000135567778775566888888888777776653 579999999765
No 181
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=92.40 E-value=1.8 Score=40.47 Aligned_cols=158 Identities=19% Similarity=0.112 Sum_probs=85.9
Q ss_pred ccHHHHHHHHHHHcCC---CE-EEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC--ceEEEEcCCcc
Q 009060 27 GTLGRHLARRLVEIGA---KD-VFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG--VGACVVTFTVG 100 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV---~~-vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg--~gv~~~t~GpG 100 (545)
...-+++.+.+.+.|+ +. ++.=-|.. . +..... .+....... ..+.-+|.|.+.+.. +.++++ |=|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~d~ii~~D~G~~-~-~~~~~~---~~~~~~g~m-G~glpaAiGa~la~p~r~Vv~i~--GDG 79 (193)
T cd03375 8 GSILKALAKALAELGIDPEKVVVVSGIGCS-S-RLPYYF---NTYGFHTLH-GRALAVATGVKLANPDLTVIVVS--GDG 79 (193)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCChh-c-eehhhc---cccchhhhh-ccHHHHHHHHHHhCCCCeEEEEe--ccc
Confidence 4466788899988886 33 33333432 2 111111 111111000 224447888777764 455554 444
Q ss_pred h--HHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcc---------cccc-cCC-CChHHHHHHhhhc-eeEE--EEeCC
Q 009060 101 G--LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRI---------LHHT-IGL-PDFTQELRCFQAI-TCSQ--AVVNN 164 (545)
Q Consensus 101 ~--~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~---------~~~~-~~~-~~~~d~~~~~~~~-~k~~--~~v~~ 164 (545)
. .-.+..+..|...++|+++|.-+......-++.. .+.. .+. ....|...+.+.+ .++. .++++
T Consensus 80 s~f~m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~ 159 (193)
T cd03375 80 DLAAIGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGD 159 (193)
T ss_pred hHhhccHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCC
Confidence 3 2346788999999999999887654332111100 0000 000 0013456666666 3443 36777
Q ss_pred hhhHHHHHHHHHHHhhhCCCcEEEEeCCCCCC
Q 009060 165 LGDAHELIDTAISTALKESKPVYISISCNLPG 196 (545)
Q Consensus 165 ~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv~~ 196 (545)
++++.+.+++|+ ..+||+.|++..+-+.
T Consensus 160 ~~el~~al~~al----~~~gp~vIev~~~C~~ 187 (193)
T cd03375 160 IKQLKEIIKKAI----QHKGFSFVEVLSPCPT 187 (193)
T ss_pred HHHHHHHHHHHH----hcCCCEEEEEECCCCC
Confidence 777766666655 4689999999887654
No 182
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=92.27 E-value=6.4 Score=35.39 Aligned_cols=139 Identities=14% Similarity=-0.025 Sum_probs=77.1
Q ss_pred CCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHH-HHHHHHHhHhc-CCcE
Q 009060 42 AKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS-VLNAIAGAYSE-NLPV 118 (545)
Q Consensus 42 V~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n-~~~~l~~A~~~-~~Pl 118 (545)
=..|++=.|.....++... +.+ -+++..-.=..+.-+|.|.+.+.. +.+|++ |=|... .+..+..+... +.|+
T Consensus 14 d~~vv~d~G~~~~~~~~~~-~~~-~~~~~~gsmG~~lp~AiGa~~a~~~~Vv~i~--GDG~f~m~~~el~t~~~~~~~~i 89 (157)
T cd02001 14 DTPIVSTTGYASRELYDVQ-DRD-GHFYMLGSMGLAGSIGLGLALGLSRKVIVVD--GDGSLLMNPGVLLTAGEFTPLNL 89 (157)
T ss_pred CCEEEeCCCHhHHHHHHhh-cCC-CCEEeecchhhHHHHHHHHHhcCCCcEEEEE--CchHHHhcccHHHHHHHhcCCCE
Confidence 3455555565554443222 222 355531111222336777666655 555553 555443 34666777666 6999
Q ss_pred EEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 119 ICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 119 lvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
++|.-+......-.+ ++... ...|...+.+.+--...++.+++++.+.+++|+ ..+||+.|++..+
T Consensus 90 ~~vV~nN~~~g~~~~---~~~~~--~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~----~~~gp~vi~v~i~ 155 (157)
T cd02001 90 ILVVLDNRAYGSTGG---QPTPS--SNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLL----ATTGPTLLHAPIA 155 (157)
T ss_pred EEEEEeCccccccCC---cCCCC--CCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHH----hCCCCEEEEEEec
Confidence 999876543321111 11111 013566777877666678888777766666655 4579999998765
No 183
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=92.17 E-value=1 Score=46.17 Aligned_cols=112 Identities=16% Similarity=0.036 Sum_probs=69.5
Q ss_pred HHHHHHhHHhhhcCceEEEEcCCcchHH---HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHh
Q 009060 76 NAGYAADGYARSRGVGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCF 152 (545)
Q Consensus 76 ~A~~~A~gyar~tg~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 152 (545)
.|..+|.|..+...-.++++..|=|+.+ +..++..|...+.|+|+|.-+..... ... .+.... ..|..+..
T Consensus 130 ~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~-~~~--~~~~~~---~~d~~~~a 203 (341)
T TIGR03181 130 HAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAI-SVP--RSKQTA---APTLAQKA 203 (341)
T ss_pred HHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCcc-ccc--hhhhhC---CcCHHHHH
Confidence 4555555533332235666677887776 23557778899999999987643211 110 000011 12345666
Q ss_pred hhceeEEEEeCChhh--HHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 153 QAITCSQAVVNNLGD--AHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 153 ~~~~k~~~~v~~~~~--~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
+.+--...++...+. +.+.+..|++.|...+||+.|++-..
T Consensus 204 ~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~ 246 (341)
T TIGR03181 204 IAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTY 246 (341)
T ss_pred hhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEee
Confidence 666555677776654 47788899999988889999998644
No 184
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=91.96 E-value=0.58 Score=47.03 Aligned_cols=116 Identities=19% Similarity=0.191 Sum_probs=72.7
Q ss_pred HHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCC---CccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEE
Q 009060 232 LNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS---GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVF 308 (545)
Q Consensus 232 l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~---~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~ 308 (545)
|.+|+ .++-.|.|....+..+.+.+||+.+|.-|-.|-. ..|.+|.++ .+|. .|. .=.+|+.|.
T Consensus 191 L~~A~-vVV~~GrG~~~~e~~~~~~~LA~~LGaavG~SRp~vd~~gW~p~~~--QIGq----TGk------~V~P~lYiA 257 (312)
T PRK11916 191 LSKAK-RVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERER--YIGV----SGV------LLKSDLYLT 257 (312)
T ss_pred cccCC-EEEECCCCCCChHHHHHHHHHHHHhCCEEEecHHHHccCCCCChhc--EECC----CCC------CcCccEEEE
Confidence 33443 3455667777667889999999999999988854 235676543 4454 232 135799999
Q ss_pred eCCCCCCCcccccccCCCCCcEEEEcCCcceec-CCCcccc-ccHHHHHHHHHHHhc
Q 009060 309 VGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG-NGPSLGW-VFMADFLSALAKKLR 363 (545)
Q Consensus 309 lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~-~d~~~~l~~L~~~l~ 363 (545)
+|-+=.-.-..+.. ....+|-||.|+...= +...|.- .|+.+++..|.+.++
T Consensus 258 ~GISGAiQH~aGm~---~s~~IVAIN~Dp~APIF~~ADygiVgD~~~vlP~L~e~l~ 311 (312)
T PRK11916 258 LGISGQIQHMVGGN---GAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLS 311 (312)
T ss_pred eccccHHHHHhhcc---cCCEEEEECCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 99662111111221 2346889999987310 0112222 389999999998874
No 185
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=91.62 E-value=0.52 Score=48.23 Aligned_cols=112 Identities=20% Similarity=0.270 Sum_probs=71.2
Q ss_pred CEEEcCccccccchHHHHHHHHHHhCCceEeCCC--CccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCC
Q 009060 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFND 315 (545)
Q Consensus 238 pvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~--~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~ 315 (545)
.++-.|.|....+..+.+.+||+.+|.-|-.|-. -.|.+|.+ ..+|.. |. .-.+|+.|.+|-+=.-
T Consensus 239 vVVsgGRGv~~~en~~l~eeLA~~LGaavGaSRp~vD~GW~p~~--~QIGqT-Gk---------~V~P~lYIA~GISGAi 306 (356)
T PLN00022 239 VVVTGGRGLKSAENFKMLEKLADKLGGAVGASRAAVDAGFVPND--LQVGQT-GK---------IVAPELYIAVGISGAI 306 (356)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHhCCceeccHHHHhCCCCChH--heeccC-CC---------CcCCcEEEEEecchHH
Confidence 3445667777767889999999999999988754 34666544 344541 21 1367999999966211
Q ss_pred CcccccccCCCCCcEEEEcCCcceec-CCCcccc-ccHHHHHHHHHHHhcc
Q 009060 316 YSSVGYSLLIKKEKAIIVQPHRVTVG-NGPSLGW-VFMADFLSALAKKLRK 364 (545)
Q Consensus 316 ~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~-~d~~~~l~~L~~~l~~ 364 (545)
.-..+.. ....+|-||.|+...= +...|.- .|+.+++..|+++++.
T Consensus 307 QH~~Gm~---~s~~IVAIN~D~~APIF~~ADygIVgD~~evlP~Lie~lk~ 354 (356)
T PLN00022 307 QHLAGMK---DSKVIVAINKDADAPIFQVADYGLVADLFEAVPELLEKLPE 354 (356)
T ss_pred HHHhhcc---cCCEEEEECCCCCCCchhhcCeeEeeeHHHHHHHHHHHHHh
Confidence 1111221 2346888999987310 0112222 3899999999998864
No 186
>PRK12754 transketolase; Reviewed
Probab=91.52 E-value=5.4 Score=44.68 Aligned_cols=116 Identities=15% Similarity=0.062 Sum_probs=78.6
Q ss_pred eEE-ecCchhHHHHHHhHHhhhcCceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCCh
Q 009060 67 NLV-GCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF 145 (545)
Q Consensus 67 ~~i-~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~ 145 (545)
++| ...-|++++.+|.|.+.-.|.-.++.|..+=+.-+.+.|-.+...+.|++++........ |.+-..| |.
T Consensus 403 r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf~~tf~~F~~r~~~qir~~a~~~l~V~~v~th~gi~~-G~DG~TH------q~ 475 (663)
T PRK12754 403 NYIHYGVREFGMTAIANGIALHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGL-GEDGPTH------QP 475 (663)
T ss_pred CeEeeccchhhHHHHHhhHHhcCCCeEEEEeeHHHHHHHHHHHHHHHHcCCCeEEEEECCcccc-CCCCCCc------cc
Confidence 655 578999999999999997784344445666556777888888889999988775544432 4332334 34
Q ss_pred HHHHHHhhhcee-EEEEeCChhhHHHHHHHHHHHhhhC-CCcEEEEeCCC
Q 009060 146 TQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKE-SKPVYISISCN 193 (545)
Q Consensus 146 ~d~~~~~~~~~k-~~~~v~~~~~~~~~l~~A~~~a~~~-~GPV~l~iP~d 193 (545)
+.++.++|.+-. ...++.+..++ ..+++.|... .||+||.++..
T Consensus 476 iEdla~lR~iPn~~V~~PaD~~E~----~~~~~~a~~~~~gP~yirl~R~ 521 (663)
T PRK12754 476 VEQVASLRVTPNMSTWRPCDQVES----AVAWKYGVERQDGPTALILSRQ 521 (663)
T ss_pred HHHHHHHhcCCCcEEecCCCHHHH----HHHHHHHHhCCCCCEEEEeCCC
Confidence 567889998754 22334444333 4555666554 69999999976
No 187
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=91.42 E-value=0.18 Score=50.79 Aligned_cols=62 Identities=18% Similarity=0.318 Sum_probs=38.3
Q ss_pred CccccchhHHHHHHhhhhcCCCeEEEEEcchhhccc-HHHHHHHHHhCCC----eEEEEEeCCchhh
Q 009060 437 QYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT-AQEISTMIRCGQR----SIIFLINNGGYTI 498 (545)
Q Consensus 437 ~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~-~~eL~ta~~~~lp----i~ivV~NN~~~g~ 498 (545)
-.|-+||+++.|.||++-+||.-|+|++|||-+-=. ...=|.+.++=-| .++=|++=+||.|
T Consensus 138 EGGELGYaLshA~GA~~DnPdliv~~vvGDGEaETGplA~sWh~~kflnP~~dGaVLPILhLNG~KI 204 (379)
T PF09364_consen 138 EGGELGYALSHAFGAVFDNPDLIVACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPILHLNGYKI 204 (379)
T ss_dssp --SSTS-HHHHHHHHHTT-TT-EEEEEEETTGGGSHHHHHHGGGGGSS-TTTS-EEEEEEEE-SBSS
T ss_pred cCcchhhHHHHHhhcccCCCCeEEEEEecCCcccCCcccccccccceeCcccCceeeceEEecCccc
Confidence 357899999999999999999999999999997554 2333333333111 3333444446777
No 188
>PTZ00089 transketolase; Provisional
Probab=90.99 E-value=2.5 Score=47.48 Aligned_cols=115 Identities=18% Similarity=0.110 Sum_probs=76.0
Q ss_pred eEE-ecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCC
Q 009060 67 NLV-GCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (545)
Q Consensus 67 ~~i-~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~ 144 (545)
|+| ...-|++++.+|.|.|+-.| ..++. |..+=+.=+...+..+...+.|++++....... .|.+-..| |
T Consensus 404 rfi~~GIaEq~mv~~AaGlA~~~G~~P~~~-tf~~Fl~Ra~dqir~~al~~lpV~~v~thdg~~-~g~DG~TH------q 475 (661)
T PTZ00089 404 RYIRFGVREHAMCAIMNGIAAHGGFIPFGA-TFLNFYGYALGAVRLAALSHHPVIYVATHDSIG-LGEDGPTH------Q 475 (661)
T ss_pred CeeeeeecHHHHHHHHHHHHHcCCCeEEEE-ehHHHHHHHHHHHHHHHhcCCCeEEEEeCCcee-cCCCCCCc------c
Confidence 555 57789999999999999667 44444 555555567788888889999999986332222 23222233 3
Q ss_pred hHHHHHHhhhcee-EEEEeCChhhHHHHHHHHHHHhhh-CCCcEEEEeCCC
Q 009060 145 FTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALK-ESKPVYISISCN 193 (545)
Q Consensus 145 ~~d~~~~~~~~~k-~~~~v~~~~~~~~~l~~A~~~a~~-~~GPV~l~iP~d 193 (545)
.+.++.+++.+-- ...++.+..++ ..+++.|.. ..||++|.+|..
T Consensus 476 ~iedia~lR~iPn~~V~~PaD~~E~----~~~l~~al~~~~gP~~irl~R~ 522 (661)
T PTZ00089 476 PVETLALLRATPNLLVIRPADGTET----SGAYALALANAKTPTILCLSRQ 522 (661)
T ss_pred cHHHHHHHhcCCCcEEEecCCHHHH----HHHHHHHHHcCCCCEEEEecCC
Confidence 4567888998743 22444444444 445555553 479999999976
No 189
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=90.94 E-value=0.66 Score=46.64 Aligned_cols=111 Identities=16% Similarity=0.128 Sum_probs=70.9
Q ss_pred CEEEcCccccccchHHHHHHHHHHhCCceEeCCCC---ccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCC
Q 009060 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSG---KGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFN 314 (545)
Q Consensus 238 pvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~---kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~ 314 (545)
.++-.|.|....+..+.+++||+.+|.-|-+|-.. .|.+|. ...+|.. |.. =.+|+.|.+|-+=.
T Consensus 197 vVVsgGRG~~~~E~~~l~eeLA~~LGaavg~SRp~vd~~gW~p~--~~QIGqT-Gk~---------V~P~lYiA~GISGa 264 (313)
T PRK03363 197 LVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEH--ERYVGIS-NLM---------LKPELYLAVGISGQ 264 (313)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhCCeEEecHHHHccCCCCCH--HheecCC-CCC---------cCccEEEEEccccH
Confidence 34446677777778899999999999999988552 247764 4456542 321 25799999996621
Q ss_pred CCcccccccCCCCCcEEEEcCCcceec-CCCcccc-ccHHHHHHHHHHHhc
Q 009060 315 DYSSVGYSLLIKKEKAIIVQPHRVTVG-NGPSLGW-VFMADFLSALAKKLR 363 (545)
Q Consensus 315 ~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~-~d~~~~l~~L~~~l~ 363 (545)
-.-..+.. ....+|-||.|+...= +...|.- .|+.++|..|.++++
T Consensus 265 iQH~~Gm~---~s~~IVAIN~Dp~APIF~~ADygiVgD~~eilP~L~e~l~ 312 (313)
T PRK03363 265 IQHMVGAN---ASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALA 312 (313)
T ss_pred HHHHhhcc---cCCEEEEEcCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 11111221 2346888999987310 0112222 389999999998874
No 190
>PLN02790 transketolase
Probab=90.94 E-value=7 Score=43.87 Aligned_cols=116 Identities=18% Similarity=0.164 Sum_probs=75.8
Q ss_pred eEE-ecCchhHHHHHHhHHhhhc-C-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCC
Q 009060 67 NLV-GCCNELNAGYAADGYARSR-G-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 143 (545)
Q Consensus 67 ~~i-~~~hE~~A~~~A~gyar~t-g-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~ 143 (545)
|+| ...-|++++.+|.|.|+.. | ..++. |..+=++-+..++..+...+.|++++....... .|.+-..|
T Consensus 393 Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~~-tf~~F~~~~~~~ir~~al~~lpV~~v~thdg~~-~G~DG~TH------ 464 (654)
T PLN02790 393 RNVRFGVREHGMGAICNGIALHSSGLIPYCA-TFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIG-LGEDGPTH------ 464 (654)
T ss_pred CeEEeeechHHHHHHHHHHHhcCCCcEEEEE-ecHHHHHHHHHHHHHHHhcCCCeEEEEECCcee-ecCCCCCc------
Confidence 555 5779999999999999985 8 44443 554444456678888888999988887433222 23322233
Q ss_pred ChHHHHHHhhhceeE-EEEeCChhhHHHHHHHHHHHhhh-CCCcEEEEeCCCC
Q 009060 144 DFTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALK-ESKPVYISISCNL 194 (545)
Q Consensus 144 ~~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~a~~-~~GPV~l~iP~dv 194 (545)
|.+.++.+++.+-.. ..++.+..++. .+++.|.. ..||++|.+|..-
T Consensus 465 q~iedla~lR~iPnl~V~~PaD~~E~~----~~l~~al~~~~gP~~irl~R~~ 513 (654)
T PLN02790 465 QPIEHLASLRAMPNILMLRPADGNETA----GAYKVAVTNRKRPTVLALSRQK 513 (654)
T ss_pred ccHHHHHHhcCCCCcEEEeCCCHHHHH----HHHHHHHHcCCCCEEEEecCCC
Confidence 345678899987542 23444444444 45555554 4799999999763
No 191
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=90.94 E-value=3.8 Score=41.14 Aligned_cols=158 Identities=15% Similarity=0.002 Sum_probs=86.9
Q ss_pred ccHHHHHHHHHHHcCC--CEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC--ceEEEEcCCcch-
Q 009060 27 GTLGRHLARRLVEIGA--KDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG--VGACVVTFTVGG- 101 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV--~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg--~gv~~~t~GpG~- 101 (545)
-..-..+.+.|.+.|+ +.+.-+.|.......-...+ ...+...| .-+.-+|.|.+.+.. +.+|++ |=|.
T Consensus 27 ~~i~~~i~~al~~l~l~p~d~vivsdiG~s~~~~~yl~---~~~~~g~m-G~alpaAiGaklA~pd~~VV~i~--GDG~~ 100 (301)
T PRK05778 27 FGILNAIIQALAELGLDPDKVVVVSGIGCSSKIPGYFL---SHGLHTLH-GRAIAFATGAKLANPDLEVIVVG--GDGDL 100 (301)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEeCCcHhhhhhhhcc---cCccchhh-ccHHHHHHHHHHHCCCCcEEEEe--CccHH
Confidence 3456788899999877 34444445443332111111 12223344 345667888777664 445544 5453
Q ss_pred -HHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCc---------cccc-ccCCC-ChHHHHHHhhhce-eEE--EEeCChh
Q 009060 102 -LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNR---------ILHH-TIGLP-DFTQELRCFQAIT-CSQ--AVVNNLG 166 (545)
Q Consensus 102 -~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~---------~~~~-~~~~~-~~~d~~~~~~~~~-k~~--~~v~~~~ 166 (545)
.-.++-+..|.+.++|+++|.-+......-++. .... ..+.. .-.|...+.+.+- ++. .++.+++
T Consensus 101 ~~mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~ 180 (301)
T PRK05778 101 ASIGGGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVK 180 (301)
T ss_pred HhccHHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHH
Confidence 344677899999999999998764432111110 0000 00000 1134556666653 222 2577777
Q ss_pred hHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 167 DAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 167 ~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
++.+.+++|+ ..+||++|++....
T Consensus 181 eL~~ai~~A~----~~~GpalIeV~~~C 204 (301)
T PRK05778 181 QLVELIKKAI----SHKGFAFIDVLSPC 204 (301)
T ss_pred HHHHHHHHHH----hCCCCEEEEEcCCC
Confidence 7766666655 46899999987664
No 192
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=90.88 E-value=6.9 Score=41.83 Aligned_cols=148 Identities=16% Similarity=0.123 Sum_probs=86.1
Q ss_pred CCCccHHHHHHHHHHHcCC--CEEEecCCC-----C----hHHHHHhhhcCCCCeEEe-cCchhHHHHHHhHHhhhcC-c
Q 009060 24 ASVGTLGRHLARRLVEIGA--KDVFSVPGD-----F----NLTLLDHLIAEPELNLVG-CCNELNAGYAADGYARSRG-V 90 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV--~~vFg~pG~-----~----~~~l~~al~~~~~i~~i~-~~hE~~A~~~A~gyar~tg-~ 90 (545)
|..++..+++.+.|.+..- +.||.+-.+ . ...|.+.+. .=|++. ..-|++++.+|.|.|.. | .
T Consensus 139 ~~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fg---p~R~id~gIaEq~~vg~AaGlA~~-G~r 214 (464)
T PRK11892 139 MVTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFG---ARRVIDTPITEHGFAGIGVGAAFA-GLK 214 (464)
T ss_pred ccchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhC---ccceeecCccHHHHHHHHHHHHhC-CCE
Confidence 5667888888887777753 345555321 1 123444441 125664 67999999999999985 6 4
Q ss_pred eEEEEcCCcchHHHHHHHHH-hH--------hcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeE-EE
Q 009060 91 GACVVTFTVGGLSVLNAIAG-AY--------SENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QA 160 (545)
Q Consensus 91 gv~~~t~GpG~~n~~~~l~~-A~--------~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~-~~ 160 (545)
.++.....-=+..++.-|.+ +. +.+.||++...+-+... .+ .||++ +...+++.+-.. ..
T Consensus 215 Piv~~~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~--~G--~hhs~------~d~a~~~~iPgl~V~ 284 (464)
T PRK11892 215 PIVEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR--VA--AQHSQ------DYAAWYSHIPGLKVV 284 (464)
T ss_pred EEEEEehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC--CC--Ccccc------CHHHHHhhCCCCEEE
Confidence 44432211122334444432 23 56799999865443321 22 25533 236788887432 24
Q ss_pred EeCChhhHHHHHHHHHHHhhhCCCcEEEE
Q 009060 161 VVNNLGDAHELIDTAISTALKESKPVYIS 189 (545)
Q Consensus 161 ~v~~~~~~~~~l~~A~~~a~~~~GPV~l~ 189 (545)
.+.++.++..+++.|+ ..++||++.
T Consensus 285 ~P~d~~d~~~ll~~ai----~~~~Pv~il 309 (464)
T PRK11892 285 APYSAADAKGLLKAAI----RDPNPVIFL 309 (464)
T ss_pred EeCCHHHHHHHHHHHh----hCCCcEEEE
Confidence 5667777777766665 447999984
No 193
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=90.71 E-value=2.1 Score=38.56 Aligned_cols=107 Identities=19% Similarity=0.091 Sum_probs=63.5
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCc--------ccccccCCCChH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNR--------ILHHTIGLPDFT 146 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~--------~~~~~~~~~~~~ 146 (545)
+.-+|.|.+.+.. +.+|++--|. +...+.++..|...+.|+++|.-+-......+.. ...... ...
T Consensus 51 ~~~~a~Gaa~a~~~~~vv~~~GDG~-~~~~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~---~~~ 126 (168)
T cd00568 51 GLPAAIGAALAAPDRPVVCIAGDGG-FMMTGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDL---SNP 126 (168)
T ss_pred hHHHHHHHHHhCCCCcEEEEEcCcH-HhccHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccC---CCC
Confidence 3446777777663 4555543332 2235688888989999999998765433211100 000001 123
Q ss_pred HHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeC
Q 009060 147 QELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (545)
Q Consensus 147 d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP 191 (545)
|..++++.+--...++.+++++.+ +++.+.+.+||+.|++.
T Consensus 127 d~~~~a~~~G~~~~~v~~~~~l~~----a~~~a~~~~~p~~i~v~ 167 (168)
T cd00568 127 DFAALAEAYGAKGVRVEDPEDLEA----ALAEALAAGGPALIEVK 167 (168)
T ss_pred CHHHHHHHCCCeEEEECCHHHHHH----HHHHHHhCCCCEEEEEE
Confidence 556777777555677877666544 44445566899999874
No 194
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=90.67 E-value=21 Score=36.32 Aligned_cols=154 Identities=15% Similarity=0.086 Sum_probs=83.3
Q ss_pred CCccHHHHHHHHHHHcCC--CEEEecCCCChH-----HHHHhhhcCC-CCeEEe-cCchhHHHHHHhHHhhhcC-ceEEE
Q 009060 25 SVGTLGRHLARRLVEIGA--KDVFSVPGDFNL-----TLLDHLIAEP-ELNLVG-CCNELNAGYAADGYARSRG-VGACV 94 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV--~~vFg~pG~~~~-----~l~~al~~~~-~i~~i~-~~hE~~A~~~A~gyar~tg-~gv~~ 94 (545)
.+++..+++.+.|.+..- +.++.+..+... .+.+.+.+.- .=|++. ...|++++.+|.|.|.. | ..+|.
T Consensus 2 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~-G~~Piv~ 80 (327)
T PRK09212 2 AQLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFA-GLRPIVE 80 (327)
T ss_pred CcchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHc-CCeeEEE
Confidence 455677777766666532 345555443211 1133443321 136664 67999999999999994 6 44443
Q ss_pred EcCCcchHHHHHHHHH--hHh-------cCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEE-EEeCC
Q 009060 95 VTFTVGGLSVLNAIAG--AYS-------ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNN 164 (545)
Q Consensus 95 ~t~GpG~~n~~~~l~~--A~~-------~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~ 164 (545)
..+..=+..++.-|.+ |+. -++|+++...+-.....| ..|+ +..+ .+++.+-... ..+.+
T Consensus 81 ~~~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G---~tH~-----~~~e--a~~r~iP~l~V~~P~d 150 (327)
T PRK09212 81 FMTFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVA---AQHS-----QCYA--AWYSHIPGLKVVAPYF 150 (327)
T ss_pred eehhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCC---cccc-----cCHH--HHHhcCCCCEEEeeCC
Confidence 2221112233232222 344 268998876543222111 1121 1222 7888774332 45666
Q ss_pred hhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 165 LGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 165 ~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
+.++..+++.|++ .++||+|..|..
T Consensus 151 ~~e~~~~l~~a~~----~~~Pv~i~~~~~ 175 (327)
T PRK09212 151 AADCKGLLKTAIR----DPNPVIFLENEI 175 (327)
T ss_pred HHHHHHHHHHHHh----CCCcEEEEEchh
Confidence 7777777776653 479999965543
No 195
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=90.39 E-value=14 Score=33.81 Aligned_cols=112 Identities=15% Similarity=0.052 Sum_probs=66.8
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCc---ccccccC-CCChHHHHH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNR---ILHHTIG-LPDFTQELR 150 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~---~~~~~~~-~~~~~d~~~ 150 (545)
+.-+|.|.+.+.. +.+|++--|.-..+ ...+..|...++|+++|.-+-......+.. ..+...+ .....|..+
T Consensus 56 ~~~~aiGa~~a~~~~~vv~i~GDG~f~~~-~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 134 (178)
T cd02014 56 GLPGAIAAKLAYPDRQVIALSGDGGFAML-MGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAK 134 (178)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcchHHHhh-HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCceeccCCCCCHHH
Confidence 4446677666553 66776655544444 677888999999999998765432110000 0000000 001135567
Q ss_pred HhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 151 CFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 151 ~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
+++.+--...++++++++.+.+++ +....+|+.|++..|
T Consensus 135 la~a~G~~~~~v~~~~el~~~l~~----a~~~~~p~liev~~~ 173 (178)
T cd02014 135 IAEAMGIKGIRVEDPDELEAALDE----ALAADGPVVIDVVTD 173 (178)
T ss_pred HHHHCCCeEEEeCCHHHHHHHHHH----HHhCCCCEEEEEEeC
Confidence 777775556788888776555444 455679999999876
No 196
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=90.10 E-value=9.9 Score=38.71 Aligned_cols=154 Identities=19% Similarity=0.123 Sum_probs=86.7
Q ss_pred CCccHHHHHHHHHHHcCC--CEEEecCCCC-----hHHHHHhhhc-CCCCeEEe-cCchhHHHHHHhHHhhhcCceEEEE
Q 009060 25 SVGTLGRHLARRLVEIGA--KDVFSVPGDF-----NLTLLDHLIA-EPELNLVG-CCNELNAGYAADGYARSRGVGACVV 95 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV--~~vFg~pG~~-----~~~l~~al~~-~~~i~~i~-~~hE~~A~~~A~gyar~tg~gv~~~ 95 (545)
++++..+++.+.|.+..- +.++.+-.+- ....++.+.+ .++-|++. ...|++++.+|.|.|+.-...++..
T Consensus 2 ~~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~ 81 (327)
T CHL00144 2 SEVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEG 81 (327)
T ss_pred CcchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEe
Confidence 346666777777766643 3455554432 1334565654 34447885 6799999999999998533444432
Q ss_pred cCCcc-hHHHHHHHHH--hHhc-------CCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEE-EEeCC
Q 009060 96 TFTVG-GLSVLNAIAG--AYSE-------NLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNN 164 (545)
Q Consensus 96 t~GpG-~~n~~~~l~~--A~~~-------~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~ 164 (545)
..+- +.-++.-|.+ |+.. ++||++..+.-... +.+ ..|+ +.. ..+++.+-... ..+.+
T Consensus 82 -~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~--~~G-~tHs-----~~~--ea~~~~iPgl~V~~Psd 150 (327)
T CHL00144 82 -MNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGR--QLG-AEHS-----QRL--ESYFQSVPGLQIVACST 150 (327)
T ss_pred -ehhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCC--CCC-cccc-----ccH--HHHHhcCCCCEEEEeCC
Confidence 2222 2233333322 3443 78988875432111 111 1231 122 37888876553 34567
Q ss_pred hhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 165 LGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 165 ~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
+.++..+++.|+ +.++||||.-|..
T Consensus 151 ~~d~~~~l~~a~----~~~~Pv~ire~~~ 175 (327)
T CHL00144 151 PYNAKGLLKSAI----RSNNPVIFFEHVL 175 (327)
T ss_pred HHHHHHHHHHHH----hCCCcEEEEEcHH
Confidence 777777776655 3579999974433
No 197
>PRK12753 transketolase; Reviewed
Probab=89.91 E-value=6.3 Score=44.28 Aligned_cols=116 Identities=17% Similarity=0.073 Sum_probs=77.9
Q ss_pred eEE-ecCchhHHHHHHhHHhhhcCceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCCh
Q 009060 67 NLV-GCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF 145 (545)
Q Consensus 67 ~~i-~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~ 145 (545)
++| ...-|++++.+|.|.+.-.|.-.++.|..+=+.=+...|-.+...+.||+++........ |.+...| |.
T Consensus 403 r~i~~GIaEq~mv~~aaGlA~~~G~~P~~~tf~~F~~r~~~qir~~a~~~l~V~~v~thdg~~~-G~DG~TH------q~ 475 (663)
T PRK12753 403 NYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGL-GEDGPTH------QP 475 (663)
T ss_pred CEEEeeecHHHHHHHHHHHHHhCCCeEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCCccc-CCCCccc------cc
Confidence 655 577899999999999997783333445666556677888888889999999855444332 3332334 34
Q ss_pred HHHHHHhhhceeEE-EEeCChhhHHHHHHHHHHHhhh-CCCcEEEEeCCC
Q 009060 146 TQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALK-ESKPVYISISCN 193 (545)
Q Consensus 146 ~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~~~a~~-~~GPV~l~iP~d 193 (545)
+.++.+++.+-.-. .++.+..++ ..+++.|.. ..||+||.++..
T Consensus 476 iedla~lR~iPn~~v~~PaD~~E~----~~~~~~al~~~~gP~~irl~R~ 521 (663)
T PRK12753 476 VEQLASLRLTPNFSTWRPCDQVEA----AVAWKLAIERHNGPTALILSRQ 521 (663)
T ss_pred HHHHHHHhcCCCCEEEccCCHHHH----HHHHHHHHhcCCCCEEEEecCC
Confidence 56788999875422 334344333 455666665 479999999976
No 198
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=89.68 E-value=4.1 Score=45.20 Aligned_cols=115 Identities=10% Similarity=0.032 Sum_probs=75.0
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccc-cC-------CCC--
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHT-IG-------LPD-- 144 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~-~~-------~~~-- 144 (545)
+.-+|.|.+.+.. +.|+++--| |+.=...-|..|...++|+++|.-+......-+. .|+. .+ ..+
T Consensus 423 glpaaiGa~lA~pdr~Vv~i~GDG-~f~m~~~EL~Ta~r~~lpvv~iV~NN~~yg~i~~--~q~~~~~~~~~~~~~~~~~ 499 (588)
T TIGR01504 423 TIPAALGVCAADPKRNVVALSGDY-DFQFMIEELAVGAQHNIPYIHVLVNNAYLGLIRQ--AQRAFDMDYCVQLAFENIN 499 (588)
T ss_pred hHhHHHhhhhhCCCCcEEEEEcch-HhhccHHHHHHHHHhCCCeEEEEEeCCchHHHHH--HHHHhcccccceeeccccc
Confidence 4446777666653 455554333 3333357889999999999999987554311000 0000 00 000
Q ss_pred -------hHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 145 -------FTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 145 -------~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
..|..++.+.+-.+..++++++++.+.+++|++......+|+.|++..|-
T Consensus 500 ~~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 500 SSEVNGYGVDHVKVAEGLGCKAIRVFKPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred cccccCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 14667888988888999999999988888888765445799999999874
No 199
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=89.49 E-value=14 Score=42.76 Aligned_cols=175 Identities=16% Similarity=0.086 Sum_probs=89.6
Q ss_pred EEecCchhHHHH--HHhHHhhhc--C-ceEEEEcCCc-chHHHHHHHHHhHhcCC-cEEEEeCCCCCcccCCCccccccc
Q 009060 68 LVGCCNELNAGY--AADGYARSR--G-VGACVVTFTV-GGLSVLNAIAGAYSENL-PVICIVGGPNSNDYGTNRILHHTI 140 (545)
Q Consensus 68 ~i~~~hE~~A~~--~A~gyar~t--g-~gv~~~t~Gp-G~~n~~~~l~~A~~~~~-Pllvi~g~~~~~~~~~~~~~~~~~ 140 (545)
+-....|+++.. +|.|-+..+ + .-.+.+|..+ |+.=+.--+-.+-..+. ++++++...... .+.+-..|+
T Consensus 576 ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~~~~~vlig~T~gg~t-lg~dG~THQ-- 652 (896)
T PRK13012 576 LEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGATAGRTT-LGGEGLQHQ-- 652 (896)
T ss_pred EecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhcccCCeEEEEeCcccc-cCCCCCCCc--
Confidence 335778999944 555555543 2 2333334443 22222222322222233 344444332222 222222332
Q ss_pred CCCChHHHHHHhhhce-eEEEEeCChhhHHHHHHHHHHHhhh--CCCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCC
Q 009060 141 GLPDFTQELRCFQAIT-CSQAVVNNLGDAHELIDTAISTALK--ESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSN 217 (545)
Q Consensus 141 ~~~~~~d~~~~~~~~~-k~~~~v~~~~~~~~~l~~A~~~a~~--~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~ 217 (545)
-..++.+++.+. ...+++.+..++...++.+++.+.. ..+|+||.+..+-.. .+... ...
T Consensus 653 ----~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~--~p~~~-~~~---------- 715 (896)
T PRK13012 653 ----DGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYA--QPALP-EGA---------- 715 (896)
T ss_pred ----chHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCC--CCCCC-ccc----------
Confidence 234566888763 4567788888888899988876533 368999999755221 01100 000
Q ss_pred chhhHHHHHHHHHHHHhcCC--CEEEcCccccccchHHHHHHHHHHhCCce
Q 009060 218 QLGLEAAVEATADFLNKAVK--PVLVGGPNIRVAKAQKAFIELADATGYPI 266 (545)
Q Consensus 218 ~~~~~~~i~~~~~~l~~a~r--pvi~~G~g~~~~~a~~~l~~lae~~~~Pv 266 (545)
...+.+-.-.|.+.+. -+.|+|.|..-..+.++...|++++|+.+
T Consensus 716 ----~~~i~kG~y~l~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a 762 (896)
T PRK13012 716 ----EEGILKGMYRLAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVDA 762 (896)
T ss_pred ----hhccccCcEEEeccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCCe
Confidence 0011111112222222 47788888766677788888888877743
No 200
>PRK05261 putative phosphoketolase; Provisional
Probab=89.46 E-value=22 Score=40.42 Aligned_cols=116 Identities=10% Similarity=0.071 Sum_probs=74.1
Q ss_pred CCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHHHHHHHhH----h-----------cCCcEEEEeCCCCCc
Q 009060 65 ELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAY----S-----------ENLPVICIVGGPNSN 128 (545)
Q Consensus 65 ~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~l~~A~----~-----------~~~Pllvi~g~~~~~ 128 (545)
+=++|....|..+..++.||+. +| .+.+. |.. .+...+..+.+++ . .++. +++|.+ .-
T Consensus 449 ~Grvie~LsEh~~~g~~~Gy~L-tG~~~~~~-sYe-aF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn-~l~Ts~--~~ 522 (785)
T PRK05261 449 DGRVMEVLSEHLCEGWLEGYLL-TGRHGFFS-SYE-AFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLN-YLLTSH--VW 522 (785)
T ss_pred CCCeeeeecHHHHHHHHHHHHh-cCCCccee-cHH-HHHHHHHHHHHHHHHHHHHHhhcccCCCCccee-EEeecc--ee
Confidence 4588889999999999999999 88 66655 333 5555556777766 2 3333 455544 23
Q ss_pred ccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhh-CCCcEEEEeCCC
Q 009060 129 DYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK-ESKPVYISISCN 193 (545)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~-~~GPV~l~iP~d 193 (545)
..+.+...|+ .+.+++++...++=.-..+++.+..++ ..|++.|++ ..+|..|.+...
T Consensus 523 ~qghNG~THQ---~Pg~ie~l~~~r~~~~rV~rPaDaNe~----laa~~~al~s~~~p~~IvlsRQ 581 (785)
T PRK05261 523 RQDHNGFSHQ---DPGFIDHVANKKPDVIRVYLPPDANTL----LAVADHCLRSRNYINVIVAGKQ 581 (785)
T ss_pred ecCCCCCCCC---CchHHHHHHhcCCCcceEEeCCCHHHH----HHHHHHHHHhCCCCEEEEEeCC
Confidence 3455544443 445788888777744444555544444 355666655 468999888754
No 201
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=89.13 E-value=7.3 Score=35.62 Aligned_cols=140 Identities=16% Similarity=0.038 Sum_probs=76.2
Q ss_pred EEecCCCChHHHHHhhhcCCCCeEEecCchhHHH---HHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEE
Q 009060 45 VFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAG---YAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVI 119 (545)
Q Consensus 45 vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~---~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pll 119 (545)
++.=-|.........+.-...-+++.... .+-+ -+|.|.+.+.. +.+|++--| ++.-.+..+..|...+.|++
T Consensus 20 iv~d~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i~GDG-~f~~~~~el~ta~~~~~p~~ 97 (178)
T cd02002 20 IVDEAVTNGLPLRDQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAIIGDG-SFMYTIQALWTAARYGLPVT 97 (178)
T ss_pred EEecCCcccHHHHHhcccCCCCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEEEcCc-hhhccHHHHHHHHHhCCCeE
Confidence 33333454444444343212346666555 4433 37788777763 455554333 22333578888888999999
Q ss_pred EEeCCCCCcccCCC-------------cccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcE
Q 009060 120 CIVGGPNSNDYGTN-------------RILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPV 186 (545)
Q Consensus 120 vi~g~~~~~~~~~~-------------~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV 186 (545)
+|.-+......-+. .......... ..|..++++.+--...++++++++.+.+++|+ ..++|+
T Consensus 98 ~iV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~----~~~~p~ 172 (178)
T cd02002 98 VVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDP-GIDFAAIAKAFGVEAERVETPEELDEALREAL----AEGGPA 172 (178)
T ss_pred EEEEcCccHHHHHHHHHHHcCCCcccccccccccCCC-CCCHHHHHHHcCCceEEeCCHHHHHHHHHHHH----hCCCCE
Confidence 99877543211000 0000000001 13556777777555678888766655555554 467899
Q ss_pred EEEeC
Q 009060 187 YISIS 191 (545)
Q Consensus 187 ~l~iP 191 (545)
.|++.
T Consensus 173 vi~v~ 177 (178)
T cd02002 173 LIEVV 177 (178)
T ss_pred EEEEE
Confidence 99874
No 202
>PRK06163 hypothetical protein; Provisional
Probab=88.82 E-value=21 Score=33.59 Aligned_cols=157 Identities=15% Similarity=0.072 Sum_probs=82.9
Q ss_pred CCccHHHHHHHHHHHcCCC-EEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC--ceEEEEcCCcch
Q 009060 25 SVGTLGRHLARRLVEIGAK-DVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG--VGACVVTFTVGG 101 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~-~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg--~gv~~~t~GpG~ 101 (545)
+.++-.+++-+......=+ .++.=.|.....++..- ..+ -+++..--=..+.-+|.|.+.+.. +.+|++ |=|.
T Consensus 11 ~~~~~~~~i~~l~~~l~~~~~iv~D~G~~~~~~~~~~-~~~-~~~~~~GsMG~glpaAiGaalA~p~r~Vv~i~--GDG~ 86 (202)
T PRK06163 11 KVMNRFDLTCRLVAKLKDEEAVIGGIGNTNFDLWAAG-QRP-QNFYMLGSMGLAFPIALGVALAQPKRRVIALE--GDGS 86 (202)
T ss_pred CCcCHHHHHHHHHHhcCCCCEEEECCCccHHHHHHhh-cCC-CCeEeecccccHHHHHHHHHHhCCCCeEEEEE--cchH
Confidence 4444444444444444322 34444454333333332 222 223322222233346777666553 445543 5553
Q ss_pred H-HHHHHHHHhHh-cCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeE-EEEeCChhhHHHHHHHHHHH
Q 009060 102 L-SVLNAIAGAYS-ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDTAIST 178 (545)
Q Consensus 102 ~-n~~~~l~~A~~-~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~ 178 (545)
. =.+..|..+.. ..+|+++|.-+-.......+. .... ....|...+++.+--. ..++++++++...+++|+
T Consensus 87 f~m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~---~~~~-~~~~Df~~lA~a~G~~~~~~v~~~~el~~al~~a~-- 160 (202)
T PRK06163 87 LLMQLGALGTIAALAPKNLTIIVMDNGVYQITGGQ---PTLT-SQTVDVVAIARGAGLENSHWAADEAHFEALVDQAL-- 160 (202)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEcCCchhhcCCc---cCCC-CCCCCHHHHHHHCCCceEEEeCCHHHHHHHHHHHH--
Confidence 3 34577888754 478988888765433211110 0111 1113556777777543 568888888877777665
Q ss_pred hhhCCCcEEEEeCCC
Q 009060 179 ALKESKPVYISISCN 193 (545)
Q Consensus 179 a~~~~GPV~l~iP~d 193 (545)
..+||+.|++..|
T Consensus 161 --~~~~p~lIeV~i~ 173 (202)
T PRK06163 161 --SGPGPSFIAVRID 173 (202)
T ss_pred --hCCCCEEEEEEec
Confidence 4589999999887
No 203
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=88.47 E-value=2.7 Score=42.11 Aligned_cols=100 Identities=18% Similarity=0.050 Sum_probs=64.6
Q ss_pred ceEEEEcCCcchHHH---HHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeC--C
Q 009060 90 VGACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN--N 164 (545)
Q Consensus 90 ~gv~~~t~GpG~~n~---~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~--~ 164 (545)
..++++..|=|..+. .-++..|...+.|+|+|.-+.... .... .+.... ..+...+.+.+--...++. +
T Consensus 126 ~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~-i~~~--~~~~~~---~~~~~~~a~a~G~~~~~Vdg~d 199 (293)
T cd02000 126 DRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYA-ISTP--TSRQTA---GTSIADRAAAYGIPGIRVDGND 199 (293)
T ss_pred CCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCee-ccCC--HHHHhC---CccHHHHHHhCCCCEEEECCCC
Confidence 356666678777653 367888999999999999764311 1110 011111 1234556666655556675 4
Q ss_pred hhhHHHHHHHHHHHhhhCCCcEEEEeCCCCC
Q 009060 165 LGDAHELIDTAISTALKESKPVYISISCNLP 195 (545)
Q Consensus 165 ~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv~ 195 (545)
++++.+.++.|++.+....+|+.|++-.+-.
T Consensus 200 ~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~ 230 (293)
T cd02000 200 VLAVYEAAKEAVERARAGGGPTLIEAVTYRL 230 (293)
T ss_pred HHHHHHHHHHHHHHHHccCCCEEEEEEEecc
Confidence 5678888889998888888999999876543
No 204
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=88.47 E-value=0.34 Score=50.42 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhC
Q 009060 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (545)
Q Consensus 225 i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~ 263 (545)
.++++++|..|+|.+|+=|+|-.-++++.+++||+|+|.
T Consensus 296 ~~d~a~~l~~A~~ViIVPGYGmAVAqAQh~v~el~~~L~ 334 (462)
T PRK09444 296 AEEVAEMLKNSHSVIITPGYGMAVAQAQYPVAEITEKLR 334 (462)
T ss_pred HHHHHHHHHhCCcEEEECChHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999988889888888887765
No 205
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=88.32 E-value=3 Score=42.23 Aligned_cols=99 Identities=15% Similarity=0.158 Sum_probs=63.1
Q ss_pred ceEEEEcCCcchHH---HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCC--
Q 009060 90 VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNN-- 164 (545)
Q Consensus 90 ~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~-- 164 (545)
..++++..|=|.++ ...++.-|...+.|+|+|.-+.... ..+. .+.... ..+...+.+.+--...+|..
T Consensus 132 ~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg-~s~~--~~~~~~---~~~~a~~A~a~G~~~~~Vdg~d 205 (315)
T TIGR03182 132 DNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYA-MGTS--VERSSS---VTDLYKRGESFGIPGERVDGMD 205 (315)
T ss_pred CCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCcc-ccCC--HHHHhC---CcCHHHHHHhCCCCEEEECCCC
Confidence 45666677877765 2345666778899999998764211 1110 011111 12334556666555567764
Q ss_pred hhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 165 LGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 165 ~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
+.++.+.+..|++.++..+||+.|++-..-
T Consensus 206 ~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 235 (315)
T TIGR03182 206 VLAVREAAKEAVERARSGKGPILLEMKTYR 235 (315)
T ss_pred HHHHHHHHHHHHHHHHccCCCEEEEEeCCc
Confidence 557788889999988888999999987664
No 206
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=88.24 E-value=19 Score=35.71 Aligned_cols=154 Identities=12% Similarity=-0.004 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHcCC---CEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC--ceEEEEcCCcchHH
Q 009060 29 LGRHLARRLVEIGA---KDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG--VGACVVTFTVGGLS 103 (545)
Q Consensus 29 ~a~~i~~~L~~~GV---~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg--~gv~~~t~GpG~~n 103 (545)
.-+.+++.|.+.++ +.++....+...-+.. .. ....+.+.| .-+.-+|.|...+.. +.+++ .|=|..-
T Consensus 27 ~~~~v~~al~e~~~~~~d~ivvsdiGc~~~~~~-~~---~~~~~~~~~-G~alPaAiGaklA~Pdr~VV~i--~GDG~f~ 99 (277)
T PRK09628 27 ILKSIIRAIDKLGWNMDDVCVVSGIGCSGRFSS-YV---NCNTVHTTH-GRAVAYATGIKLANPDKHVIVV--SGDGDGL 99 (277)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCcCHHHHhhc-cC---CCCceeecc-ccHHHHHHHHHHHCCCCeEEEE--ECchHHH
Confidence 34668888888863 3444433333222222 22 223444445 467778889777764 44454 4555432
Q ss_pred --HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcc--------ccc--ccC--CCChHHHHHHhhhce-eE--EEEeCChh
Q 009060 104 --VLNAIAGAYSENLPVICIVGGPNSNDYGTNRI--------LHH--TIG--LPDFTQELRCFQAIT-CS--QAVVNNLG 166 (545)
Q Consensus 104 --~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~--------~~~--~~~--~~~~~d~~~~~~~~~-k~--~~~v~~~~ 166 (545)
...-+..|...++|+++|.-+-.....-++.. ... ..+ ..+ .|...+.+.+- ++ ..++.+++
T Consensus 100 ~~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~-~D~~~lA~a~G~~~va~~~v~~~~ 178 (277)
T PRK09628 100 AIGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPT-FDACKLATAAGASFVARESVIDPQ 178 (277)
T ss_pred HhhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCC-CCHHHHHHHCCCceEEEEccCCHH
Confidence 23455568999999999986543321100000 000 011 011 24456666653 33 25788888
Q ss_pred hHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 167 DAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 167 ~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
++...+++|+ ..+||++|++..+-
T Consensus 179 el~~al~~Al----~~~Gp~lIeV~~~c 202 (277)
T PRK09628 179 KLEKLLVKGF----SHKGFSFFDVFSNC 202 (277)
T ss_pred HHHHHHHHHH----hCCCCEEEEEcCCC
Confidence 8766666655 46899999988664
No 207
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=88.24 E-value=15 Score=41.20 Aligned_cols=150 Identities=17% Similarity=0.213 Sum_probs=90.0
Q ss_pred ccHHHHHHHHHHHcC--CCEEEec----CCCChHHHHHhhhc-CCCCeEE-ecCchhHHHHHHhHHhhhcC-ceEEEEcC
Q 009060 27 GTLGRHLARRLVEIG--AKDVFSV----PGDFNLTLLDHLIA-EPELNLV-GCCNELNAGYAADGYARSRG-VGACVVTF 97 (545)
Q Consensus 27 ~~~a~~i~~~L~~~G--V~~vFg~----pG~~~~~l~~al~~-~~~i~~i-~~~hE~~A~~~A~gyar~tg-~gv~~~t~ 97 (545)
.+..+++.+.|.+.. -..|+++ +|+.. ++.+.+ .++ |++ ...-|++++.+|.|.|. .| ..++.+ .
T Consensus 319 ~~~~~~f~~~L~~la~~d~~iv~isadl~~~~~---~~~f~~~~p~-R~id~GIaE~~mvg~AaGlA~-~G~~P~v~~-f 392 (641)
T PRK12571 319 PSYTSVFGEELTKEAAEDSDIVAITAAMPLGTG---LDKLQKRFPN-RVFDVGIAEQHAVTFAAGLAA-AGLKPFCAV-Y 392 (641)
T ss_pred hhHHHHHHHHHHHHHhhCCCEEEEeCCccCCCC---hHHHHHhCCC-cccccCccHHHHHHHHHHHHH-CCCEEEEEe-h
Confidence 456667666666553 3445555 33321 233433 233 655 46799999999999998 68 555544 4
Q ss_pred CcchHHHHHHH-HHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeE-EEEeCChhhHHHHHHHH
Q 009060 98 TVGGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDTA 175 (545)
Q Consensus 98 GpG~~n~~~~l-~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A 175 (545)
.+=+.-++..| .++...+.|++++.-.... .+.+...|+ ...++.+++.+--. ...+.++.++..+++.|
T Consensus 393 ~~Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~--~g~dG~THq------~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a 464 (641)
T PRK12571 393 STFLQRGYDQLLHDVALQNLPVRFVLDRAGL--VGADGATHA------GAFDLAFLTNLPNMTVMAPRDEAELRHMLRTA 464 (641)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEECCCc--CCCCCcccc------ccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 44344666666 3366789999988622211 122112333 23457888887543 34566666666666555
Q ss_pred HHHhhhCCCcEEEEeCCC
Q 009060 176 ISTALKESKPVYISISCN 193 (545)
Q Consensus 176 ~~~a~~~~GPV~l~iP~d 193 (545)
++. .++|++|.+|..
T Consensus 465 ~~~---~~~P~~ir~~r~ 479 (641)
T PRK12571 465 AAH---DDGPIAVRFPRG 479 (641)
T ss_pred HhC---CCCcEEEEEecC
Confidence 431 379999999976
No 208
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=88.15 E-value=2 Score=43.21 Aligned_cols=99 Identities=23% Similarity=0.189 Sum_probs=60.5
Q ss_pred cC-ceEEEEcCCcchHH---HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhc--eeEEEE
Q 009060 88 RG-VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAI--TCSQAV 161 (545)
Q Consensus 88 tg-~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~k~~~~ 161 (545)
.| ..|+++..|=|+++ ..-+|--|...+.|+|+|+-+......-+ ..+....... .+..+.+ .-....
T Consensus 120 ~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~aist~---~~~~~~~~~~---~~~a~~~gip~~~VD 193 (300)
T PF00676_consen 120 RGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAISTP---TEEQTASPDI---ADRAKGYGIPGIRVD 193 (300)
T ss_dssp TTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEETTEE---HHHHCSSSTS---GGGGGGTTSEEEEEE
T ss_pred cCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcccccC---ccccccccch---hhhhhccCCcEEEEC
Confidence 35 68888888887765 55666668889999999996532110000 0000000011 1223333 333445
Q ss_pred eCChhhHHHHHHHHHHHhhhCCCcEEEEeCC
Q 009060 162 VNNLGDAHELIDTAISTALKESKPVYISISC 192 (545)
Q Consensus 162 v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~ 192 (545)
=.++..+.+.+..|++.++.++||++|++-.
T Consensus 194 G~D~~av~~a~~~A~~~~R~g~gP~lie~~t 224 (300)
T PF00676_consen 194 GNDVEAVYEAAKEAVEYARAGKGPVLIEAVT 224 (300)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTT--EEEEEEE
T ss_pred CEeHHHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 5578889999999999999999999999653
No 209
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=87.85 E-value=2 Score=43.06 Aligned_cols=111 Identities=18% Similarity=0.233 Sum_probs=71.2
Q ss_pred EEEcCccccccchHHHHHHHHHHhCCceEeCCC--CccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCC
Q 009060 239 VLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDY 316 (545)
Q Consensus 239 vi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~--~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~ 316 (545)
++-.|.|....+..+.+.+||+.+|+-|-.|-. -.|.+|.+| .+|. .|. .-.+||.|++|-+=.-.
T Consensus 198 VVsgGRG~gs~enf~~i~~LA~~LGa~VGaSRp~vd~gw~p~d~--QVGq----TGk------~V~P~LYIA~GISGAiQ 265 (313)
T COG2025 198 VVSGGRGLGSKENFKLLEELADVLGAAVGASRPAVDAGWMPNDR--QVGQ----TGK------TVAPKLYIALGISGAIQ 265 (313)
T ss_pred EEEcCcccCChhhhHHHHHHHHHhCceeeccHHHHhcCCCCccc--eecC----CCc------EecccEEEEEecccHHH
Confidence 445667777777788899999999999988754 267777765 4454 222 23689999999652111
Q ss_pred cccccccCCCCCcEEEEcCCcceec-CCCcccc-ccHHHHHHHHHHHhcc
Q 009060 317 SSVGYSLLIKKEKAIIVQPHRVTVG-NGPSLGW-VFMADFLSALAKKLRK 364 (545)
Q Consensus 317 ~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~-~d~~~~l~~L~~~l~~ 364 (545)
-..+.. ....+|-||.|+...= +...|+- .|+..++.+|.+.++.
T Consensus 266 HlaGm~---~Sk~IVAINkD~nAPIF~~ADyGiVgDl~~ivP~Lie~l~~ 312 (313)
T COG2025 266 HLAGMK---DSKVIVAINKDPNAPIFQVADYGIVGDLFKIVPALIEALKK 312 (313)
T ss_pred HHhhcc---cCcEEEEEcCCCCCCccccCCeeeeeeHHHHHHHHHHHHhc
Confidence 111221 2346888998886310 0122222 2899999999988753
No 210
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=87.56 E-value=2.2 Score=47.37 Aligned_cols=113 Identities=19% Similarity=0.107 Sum_probs=73.8
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCC--------CcccccccCCCChH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGT--------NRILHHTIGLPDFT 146 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~--------~~~~~~~~~~~~~~ 146 (545)
+.-+|.|.+.+.. +.|+++--| ++.-.++.|.+|...++|+++|.-+......-+ +...+-.+. ...
T Consensus 440 glp~aiGa~la~p~r~vv~i~GDG-~f~~~~~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~--~~~ 516 (588)
T PRK07525 440 AFPAIIGAKIACPDRPVVGFAGDG-AWGISMNEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNRFVGTELD--NNV 516 (588)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcCc-hHhccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCCcccccCC--CCC
Confidence 5557788777763 667776555 444447889999999999999986654321100 000000010 113
Q ss_pred HHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 147 QELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 147 d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
|...+.+.+--+..++++++++...+++|+... ...||+.|+++.|
T Consensus 517 d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~-~~~~p~lIev~~~ 562 (588)
T PRK07525 517 SYAGIAEAMGAEGVVVDTQEELGPALKRAIDAQ-NEGKTTVIEIMCN 562 (588)
T ss_pred CHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcC-CCCCcEEEEEEec
Confidence 567788888667789999998877777776543 2358999999987
No 211
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=87.34 E-value=7.5 Score=35.70 Aligned_cols=118 Identities=24% Similarity=0.254 Sum_probs=67.3
Q ss_pred eEE-ecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchH----HHHHHHH-HhHhcCCcEEEEeCCCCCcccCCCcccccc
Q 009060 67 NLV-GCCNELNAGYAADGYARSRG-VGACVVTFTVGGL----SVLNAIA-GAYSENLPVICIVGGPNSNDYGTNRILHHT 139 (545)
Q Consensus 67 ~~i-~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~----n~~~~l~-~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~ 139 (545)
+++ ....|++.+.+|.|+|..-+ .-++..+.++=+. =....+. .....+.|+.+++. .+.. .+.+...||+
T Consensus 49 r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~~-~g~~-~~~~G~tH~s 126 (178)
T PF02779_consen 49 RFINTGIAEQNMVGMAAGLALAGGLRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVPVGTR-AGLG-YGGDGGTHHS 126 (178)
T ss_dssp TEEE--S-HHHHHHHHHHHHHHSSSEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EEEEEE-ESGG-GSTTGTTTSS
T ss_pred eEEecCcchhhccceeeeeeecccccceeEeeccccccccchhhhhhhhhhhhcccceecceee-cCcc-cccccccccc
Confidence 566 47899999999999998874 4444445554333 2334444 45667778773333 2222 1222233443
Q ss_pred cCCCChHHHHHHhhhceeEE-EEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 140 IGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 140 ~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
+ +...+++.+-.+. ..+.+++++..+++.|++. ..++||+|..|...
T Consensus 127 ~------~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~--~~~~P~~ir~~r~~ 174 (178)
T PF02779_consen 127 I------EDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR--ESDGPVYIREPRGL 174 (178)
T ss_dssp S------SHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS--SSSSEEEEEEESSE
T ss_pred c------ccccccccccccccccCCCHHHHHHHHHHHHHh--CCCCeEEEEeeHHh
Confidence 3 3467888875433 4555666666666555543 14799999999774
No 212
>PRK11269 glyoxylate carboligase; Provisional
Probab=87.31 E-value=6.5 Score=43.63 Aligned_cols=116 Identities=12% Similarity=-0.006 Sum_probs=75.0
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCC-------Ccccccc-cCC-C--
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGT-------NRILHHT-IGL-P-- 143 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~-------~~~~~~~-~~~-~-- 143 (545)
+.-+|.|.+.+.. +.+|++-- -|+.=....|..|...++|+++|.-+......-+ +...... +.. .
T Consensus 424 glpaAiGa~la~p~r~Vv~i~GD-G~f~m~~~eL~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 502 (591)
T PRK11269 424 TIPAALGVRAADPDRNVVALSGD-YDFQFLIEELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSP 502 (591)
T ss_pred hhhhHHhhhhhCCCCcEEEEEcc-chhhcCHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccCccceeeccccccc
Confidence 5567888777763 45555432 3444456788899999999999987755321000 0000000 000 0
Q ss_pred ----ChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 144 ----DFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 144 ----~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
.-.|..++.+.+-.+..++++++++.+.+++|++.....+||+.|++..|
T Consensus 503 ~~~~~~~df~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~~~~gp~lieV~v~ 556 (591)
T PRK11269 503 ELNGYGVDHVKVAEGLGCKAIRVFKPEDIAPALEQAKALMAEFRVPVVVEVILE 556 (591)
T ss_pred cccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEEec
Confidence 00356778888877889999999998888888876544679999999987
No 213
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=87.21 E-value=4.9 Score=37.08 Aligned_cols=105 Identities=15% Similarity=0.104 Sum_probs=62.0
Q ss_pred HHHHhHHhhhcC-ceEEEEcCCcchHH-HHHHHHHhHhcC-CcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhh
Q 009060 78 GYAADGYARSRG-VGACVVTFTVGGLS-VLNAIAGAYSEN-LPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQA 154 (545)
Q Consensus 78 ~~~A~gyar~tg-~gv~~~t~GpG~~n-~~~~l~~A~~~~-~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 154 (545)
.-+|.|.+.+.. +.+|++ |=|... .+..+..|...+ .|+++|.-+-.....-+. +..... ...|..++.+.
T Consensus 48 lpaAiGa~la~~~~Vv~i~--GDG~f~m~~~el~ta~~~~~~pv~~vV~NN~~yg~~~~---q~~~~~-~~~d~~~lA~a 121 (181)
T TIGR03846 48 SSIGLGLALATDRTVIVID--GDGSLLMNLGVLPTIAAESPKNLILVILDNGAYGSTGN---QPTPAS-RRTDLELVAKA 121 (181)
T ss_pred HHHHHHHHHcCCCcEEEEE--cchHHHhhhhHHHHHHHhCCCCeEEEEEeCCccccccC---cCCCCC-CCCCHHHHHHH
Confidence 346677665545 666664 444333 346788887777 599999865443211110 000110 12356677777
Q ss_pred ceeEEEE-eCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 155 ITCSQAV-VNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 155 ~~k~~~~-v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
+--...+ +++++++.+.++ +...+||+.|++..|
T Consensus 122 ~G~~~~~~v~~~~~l~~al~-----a~~~~~p~li~v~~~ 156 (181)
T TIGR03846 122 AGIRNVEKVADEEELRDALK-----ALAMKGPTFIHVKVK 156 (181)
T ss_pred CCCCeEEEeCCHHHHHHHHH-----HHcCCCCEEEEEEeC
Confidence 7544555 888877766553 334579999999887
No 214
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=87.06 E-value=1 Score=43.78 Aligned_cols=68 Identities=12% Similarity=0.087 Sum_probs=45.6
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCccccccc--CCCCCcEEEEcCCcceecCCC-ccccccHHHHHHHHHHHh
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGNGP-SLGWVFMADFLSALAKKL 362 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~-~~~~~d~~~~l~~L~~~l 362 (545)
.+.+.+.+||++|++|+++.-.....+.. ...+.+++.|+.++..+.+.. .+-..++.++|.+|.+.+
T Consensus 171 ~~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~~~~~~i~~~~~~~l~~l~~~~ 241 (244)
T PRK14138 171 EAIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDDIATLKYNMDVVEFANRVMSEG 241 (244)
T ss_pred HHHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEeCCHHHHHHHHHHHh
Confidence 34566789999999999986554433321 124568999999887664111 223457889999987754
No 215
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.95 E-value=11 Score=41.76 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=73.5
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCC-------CcccccccCCCChHH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGT-------NRILHHTIGLPDFTQ 147 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~-------~~~~~~~~~~~~~~d 147 (545)
+.-+|.|.+.+.. +.+|++--| ++.=...-|..|...++|+++|.-+......-+ +......... ...|
T Consensus 426 glpaaiGa~la~p~~~vv~i~GDG-~f~m~~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~-~~~d 503 (574)
T PRK07979 426 GLPAALGVKMALPEETVVCVTGDG-SIQMNIQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRHSQSYMQ-SLPD 503 (574)
T ss_pred HHHHHHHHHHhCCCCeEEEEEcch-hhhccHHHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCccccccCC-CCCC
Confidence 4557788777764 455554333 233334789999999999999987655321100 0000000000 1135
Q ss_pred HHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 148 ~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
...+.+.+-.+..++++++++...+++|++... ..+|..|++..|
T Consensus 504 ~~~iA~a~G~~g~~v~~~~eL~~al~~a~~~~~-~~~p~lIeV~i~ 548 (574)
T PRK07979 504 FVRLAEAYGHVGIQISHPDELESKLSEALEQVR-NNRLVFVDVTVD 548 (574)
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHHHHhccC-CCCcEEEEEEEC
Confidence 678888888888999999999888888876432 368999999987
No 216
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=86.95 E-value=8.4 Score=42.63 Aligned_cols=111 Identities=13% Similarity=0.042 Sum_probs=69.3
Q ss_pred HHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCC-Ccccc--cccC-CCChHHHHHH
Q 009060 78 GYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGT-NRILH--HTIG-LPDFTQELRC 151 (545)
Q Consensus 78 ~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~-~~~~~--~~~~-~~~~~d~~~~ 151 (545)
.-+|.|.+.+.. +.+|++--| ++.-.+..+..|...++|+++|.-+......-+ ....+ ...+ .....|..++
T Consensus 414 ~paAiGa~la~p~~~vv~i~GDG-sf~~~~~el~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~df~~l 492 (578)
T PRK06546 414 LPHAIGAQLADPGRQVISMSGDG-GLSMLLGELLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPDFGTDHPPVDYAAI 492 (578)
T ss_pred hHHHHHHHHhCCCCcEEEEEcCc-hHhhhHHHHHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCcccccCCCCCHHHH
Confidence 347888777653 555554333 233345788889999999999987654421100 00000 0000 0112466778
Q ss_pred hhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 152 FQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 152 ~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
.+.+-....++++++++.+.+++|++ .+||+.|++..|
T Consensus 493 A~a~G~~~~~v~~~~el~~al~~a~~----~~gp~lIev~~~ 530 (578)
T PRK06546 493 AAALGIHAVRVEDPKDVRGALREAFA----HPGPALVDVVTD 530 (578)
T ss_pred HHHCCCeeEEeCCHHHHHHHHHHHHh----CCCCEEEEEEeC
Confidence 88887778899998888777776654 589999999876
No 217
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=86.88 E-value=11 Score=41.62 Aligned_cols=158 Identities=12% Similarity=0.032 Sum_probs=87.6
Q ss_pred ccHHHHHHHHHHH-cCCCEEEecCCCCh-HHHHHhhhcCCCCeEEecCchh---HHHHHHhHHhhhcC--ceEEEEcCCc
Q 009060 27 GTLGRHLARRLVE-IGAKDVFSVPGDFN-LTLLDHLIAEPELNLVGCCNEL---NAGYAADGYARSRG--VGACVVTFTV 99 (545)
Q Consensus 27 ~~~a~~i~~~L~~-~GV~~vFg~pG~~~-~~l~~al~~~~~i~~i~~~hE~---~A~~~A~gyar~tg--~gv~~~t~Gp 99 (545)
++..+ +++.|.+ .. +.++..-++.. ......+. ...-+++....=. .+.-+|.|.+.+.. +.+|++--|
T Consensus 383 l~~~~-~~~~l~~~~~-d~iv~~d~G~~~~~~~~~~~-~~~~~~~~~~~~g~mG~glpaaiGaala~p~~~vv~i~GDG- 458 (585)
T CHL00099 383 LSPQE-VINEISQLAP-DAYFTTDVGQHQMWAAQFLK-CKPRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICISGDA- 458 (585)
T ss_pred cCHHH-HHHHHHhhCC-CeEEEECCcHHHHHHHHhcc-CCCCcEEcCccccchhhhHHHHHHHHHhCCCCeEEEEEcch-
Confidence 44444 4444433 34 66665443332 22222232 1223455433212 23447788777653 555554333
Q ss_pred chHHHHHHHHHhHhcCCcEEEEeCCCCCcccC--------CCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHH
Q 009060 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYG--------TNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHEL 171 (545)
Q Consensus 100 G~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~--------~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~ 171 (545)
|+.=....|..|...++|++++.-+......- .++..+......+ .|...+.+.+--+..++++++++.+.
T Consensus 459 ~f~m~~~eL~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~-~d~~~la~a~G~~~~~v~~~~el~~a 537 (585)
T CHL00099 459 SFQMNLQELGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGERYSHSNMEEGA-PDFVKLAEAYGIKGLRIKSRKDLKSS 537 (585)
T ss_pred hhhhhHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCcccccCCCCC-CCHHHHHHHCCCeEEEeCCHHHHHHH
Confidence 33333478889999999999998765532100 0000000000011 35677888887788899998888777
Q ss_pred HHHHHHHhhhCCCcEEEEeCCC
Q 009060 172 IDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 172 l~~A~~~a~~~~GPV~l~iP~d 193 (545)
+++|+. ..||..|++..|
T Consensus 538 l~~a~~----~~~p~liev~v~ 555 (585)
T CHL00099 538 LKEALD----YDGPVLIDCQVI 555 (585)
T ss_pred HHHHHh----CCCCEEEEEEEC
Confidence 777664 578999999988
No 218
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=86.84 E-value=3.8 Score=44.86 Aligned_cols=107 Identities=11% Similarity=-0.015 Sum_probs=70.1
Q ss_pred HHhHHhhhcC-ceEEEEcCCcchHH-HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccc--cCCCChHHHHHHhhhc
Q 009060 80 AADGYARSRG-VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHT--IGLPDFTQELRCFQAI 155 (545)
Q Consensus 80 ~A~gyar~tg-~gv~~~t~GpG~~n-~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~ 155 (545)
+|.|.+.+.+ +.|++ .|=|... .+.-|..|...++|+++|.-.......-+. .|+. ....+..|...+.+.+
T Consensus 411 aaiGa~lA~~~r~v~i--~GDG~f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~--~~~~~~~~~~~~~d~~~lA~a~ 486 (535)
T TIGR03394 411 AGIGAQCTSGKRILTL--VGDGAFQMTGWELGNCRRLGIDPIVILFNNASWEMLRV--FQPESAFNDLDDWRFADMAAGM 486 (535)
T ss_pred HHHHHHhCCCCCeEEE--EeChHHHhHHHHHHHHHHcCCCcEEEEEECCccceeeh--hccCCCcccCCCCCHHHHHHHc
Confidence 5666666655 45554 4555444 358899999999999999877554321110 1100 0001113667888888
Q ss_pred eeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 156 TCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 156 ~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
-.+..++++++++...+++|++ ...+|+.|++..|
T Consensus 487 G~~~~~v~~~~eL~~al~~a~~---~~~~p~lIev~i~ 521 (535)
T TIGR03394 487 GGDGVRVRTRAELAAALDKAFA---TRGRFQLIEAMLP 521 (535)
T ss_pred CCCceEeCCHHHHHHHHHHHHh---cCCCeEEEEEECC
Confidence 8888999999999888887774 1245889999987
No 219
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=86.70 E-value=10 Score=36.68 Aligned_cols=101 Identities=19% Similarity=0.098 Sum_probs=59.7
Q ss_pred ceEEEEcCCcch--HHHHHHHHHhHhcCCcEEEEeCCCCCccc--CCCccc----ccc----cC------CCChHHHHHH
Q 009060 90 VGACVVTFTVGG--LSVLNAIAGAYSENLPVICIVGGPNSNDY--GTNRIL----HHT----IG------LPDFTQELRC 151 (545)
Q Consensus 90 ~gv~~~t~GpG~--~n~~~~l~~A~~~~~Pllvi~g~~~~~~~--~~~~~~----~~~----~~------~~~~~d~~~~ 151 (545)
+.||++ |=|. .-.+..|..|...++|+++|.-+...... +..... +.. .+ .....|...+
T Consensus 82 ~VV~i~--GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~i 159 (235)
T cd03376 82 TVVAFA--GDGGTADIGFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLI 159 (235)
T ss_pred eEEEEE--cCchHHhhHHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHHH
Confidence 444544 4444 24468899999999999999877554321 000000 000 00 0011355677
Q ss_pred hhhce-eE--EEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCCCC
Q 009060 152 FQAIT-CS--QAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPG 196 (545)
Q Consensus 152 ~~~~~-k~--~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv~~ 196 (545)
++.+- ++ ..++.+++++.+.+++|+. .+||+.|++..+.+.
T Consensus 160 A~a~G~~~~~~~~v~~~~el~~al~~a~~----~~gP~lIev~~~C~~ 203 (235)
T cd03376 160 MAAHNIPYVATASVAYPEDLYKKVKKALS----IEGPAYIHILSPCPT 203 (235)
T ss_pred HHHcCCcEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEECCCCC
Confidence 77763 34 2467788777666666654 579999999888643
No 220
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=86.62 E-value=6.7 Score=36.43 Aligned_cols=107 Identities=18% Similarity=0.108 Sum_probs=61.8
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchH-HHHHHHHHhHhcCC-cEEEEeCCCCCcccCCCcccccccCCCChHHHHHHh
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGL-SVLNAIAGAYSENL-PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCF 152 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~-n~~~~l~~A~~~~~-Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 152 (545)
+.-+|.|.+.+.. +.+|++ |=|.. -.+..|..+...+. |+++|.-+......-.+. .... . ..|...+.
T Consensus 53 ~lpaAiGaala~p~~~Vv~i~--GDG~f~m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~---~~~~-~-~~d~~~~A 125 (188)
T cd03371 53 ASQIALGIALARPDRKVVCID--GDGAALMHMGGLATIGGLAPANLIHIVLNNGAHDSVGGQ---PTVS-F-DVSLPAIA 125 (188)
T ss_pred HHHHHHHHHHhCCCCcEEEEe--CCcHHHhhccHHHHHHHcCCCCcEEEEEeCchhhccCCc---CCCC-C-CCCHHHHH
Confidence 4456777665553 555554 44443 23567888877776 677777654432110110 0111 1 13556677
Q ss_pred hhce-eEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 153 QAIT-CSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 153 ~~~~-k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
+.+- ++..++.+++++.+.+++|+ ..++|+.|++..+-
T Consensus 126 ~a~G~~~~~~v~~~~el~~al~~a~----~~~~p~lIev~~~~ 164 (188)
T cd03371 126 KACGYRAVYEVPSLEELVAALAKAL----AADGPAFIEVKVRP 164 (188)
T ss_pred HHcCCceEEecCCHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 7763 44467877777766666554 45799999998874
No 221
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.60 E-value=13 Score=41.35 Aligned_cols=111 Identities=16% Similarity=0.118 Sum_probs=71.2
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHH-HHHHHHHhHhcCCcEEEEeCCCCCcccCC-------CcccccccCCCChH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGT-------NRILHHTIGLPDFT 146 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n-~~~~l~~A~~~~~Pllvi~g~~~~~~~~~-------~~~~~~~~~~~~~~ 146 (545)
+.-+|.|.+.+.. +.+|++ |=|... ...-|..|...++|++++.-+......-+ +.......... ..
T Consensus 435 glpaaiGa~lA~p~r~Vv~i~--GDG~f~m~~~EL~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~-~~ 511 (595)
T PRK09107 435 GLPAALGVQIAHPDALVIDIA--GDASIQMCIQEMSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNRLSHSYTEA-MP 511 (595)
T ss_pred hHHHHHHHHHhCCCCeEEEEE--cCchhhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCccccccCCC-CC
Confidence 4457778766654 444443 444333 34679999999999999998755431100 00000000000 13
Q ss_pred HHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 147 QELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 147 d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
|...+.+.+-.+..++++++++.+.+++|+. ..+|+.|+++.|-
T Consensus 512 d~~~lA~a~G~~~~~v~~~~el~~al~~a~~----~~~p~lIeV~i~~ 555 (595)
T PRK09107 512 DFVKLAEAYGAVGIRCEKPGDLDDAIQEMID----VDKPVIFDCRVAN 555 (595)
T ss_pred CHHHHHHHCCCeEEEECCHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 5677888888888999999988777777664 4789999999883
No 222
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=86.59 E-value=8.4 Score=42.62 Aligned_cols=164 Identities=16% Similarity=0.082 Sum_probs=90.7
Q ss_pred ccHHHHHHHHHHHcCCCEEEecC-CCChHHHHHhhhcCCCCeEEecCchhH----HHHHHhHHhhhcC--ceEEEEcCCc
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVP-GDFNLTLLDHLIAEPELNLVGCCNELN----AGYAADGYARSRG--VGACVVTFTV 99 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~p-G~~~~~l~~al~~~~~i~~i~~~hE~~----A~~~A~gyar~tg--~gv~~~t~Gp 99 (545)
++..+.+.+.-+...=+.++..- |.........+.-....+++. ..-.+ +.-+|.|.+.+.. +.+|++--|.
T Consensus 381 l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~-~~~~g~mG~~lpaaiGa~la~p~~~Vv~i~GDG~ 459 (579)
T TIGR03457 381 LHPRQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFEKPRKFLA-PMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGA 459 (579)
T ss_pred cCHHHHHHHHHHhCCCCeEEEECCchhHHHHHHhcCcCCCCeEEc-CCccccccchHHHHHhhhhhCCCCcEEEEEcchH
Confidence 33333333333333335555554 333333333332222244553 22222 4447788776653 5555543332
Q ss_pred chHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCC---ccccc-ccC--CCChHHHHHHhhhceeEEEEeCChhhHHHHHH
Q 009060 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN---RILHH-TIG--LPDFTQELRCFQAITCSQAVVNNLGDAHELID 173 (545)
Q Consensus 100 G~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~---~~~~~-~~~--~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~ 173 (545)
+.=....|..|...++|+++|.-+......-+. ..... ..+ .....|...+.+.+-.+..++++++++...++
T Consensus 460 -f~m~~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~~~~el~~al~ 538 (579)
T TIGR03457 460 -WGMSMNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESELSFAGIADAMGAKGVVVDKPEDVGPALK 538 (579)
T ss_pred -HhccHHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHH
Confidence 222358899999999999988876543311000 00000 000 00113567788888777889999999988888
Q ss_pred HHHHHhhhCCCcEEEEeCCC
Q 009060 174 TAISTALKESKPVYISISCN 193 (545)
Q Consensus 174 ~A~~~a~~~~GPV~l~iP~d 193 (545)
+|++.. ...+|+.|++..|
T Consensus 539 ~a~~~~-~~~~p~lieV~v~ 557 (579)
T TIGR03457 539 KAIAAQ-AEGKTTVIEIVCT 557 (579)
T ss_pred HHHhhC-CCCCcEEEEEEeC
Confidence 888643 2468999999987
No 223
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=86.53 E-value=7.5 Score=43.30 Aligned_cols=154 Identities=12% Similarity=0.169 Sum_probs=87.1
Q ss_pred ccHHHHHHHHHHHcCC--CEEEecCCCC-hHHHHHhhhc-CCCCeEE-ecCchhHHHHHHhHHhhhcC-ceEEEEcCCcc
Q 009060 27 GTLGRHLARRLVEIGA--KDVFSVPGDF-NLTLLDHLIA-EPELNLV-GCCNELNAGYAADGYARSRG-VGACVVTFTVG 100 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV--~~vFg~pG~~-~~~l~~al~~-~~~i~~i-~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG 100 (545)
++..+++.+.|.+..- +.|+.+-.+. ...-++.+.+ .| =|++ ...-|++++.+|.|.|. .| ..+|.+ ..+=
T Consensus 310 ~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~fP-~R~~d~GIaEq~~vg~AaGlA~-~G~~Pvv~~-~a~F 386 (617)
T TIGR00204 310 PSYSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRKFP-DRYFDVAIAEQHAVTFAAGMAI-EGYKPFVAI-YSTF 386 (617)
T ss_pred ccHHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHHCc-cccccCCccHHHHHHHHHHHHH-CCCEEEEEe-cHHH
Confidence 4556666666666532 3455532211 0001333332 22 2444 46799999999999997 57 555543 4433
Q ss_pred hHHHHHHHH-HhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeE-EEEeCChhhHHHHHHHHHHH
Q 009060 101 GLSVLNAIA-GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDTAIST 178 (545)
Q Consensus 101 ~~n~~~~l~-~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~ 178 (545)
+.-++.-|. ++-..+.||+++....... +.+...|+. ...+.+++.+--. ...+.++.++..+++.|++.
T Consensus 387 l~ra~dQi~~~~a~~~lpV~i~~~~~G~~--g~dG~tH~~------~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~~~ 458 (617)
T TIGR00204 387 LQRAYDQVVHDVCIQKLPVLFAIDRAGIV--GADGETHQG------AFDISYLRCIPNMVIMAPSDENELRQMLYTGYHY 458 (617)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEECCCcC--CCCCccccc------chHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhC
Confidence 334444443 3456789999886433321 221123432 2346788887543 35566677776666665531
Q ss_pred hhhCCCcEEEEeCCCC
Q 009060 179 ALKESKPVYISISCNL 194 (545)
Q Consensus 179 a~~~~GPV~l~iP~dv 194 (545)
.++||+|.+|...
T Consensus 459 ---~~~Pv~ir~~r~~ 471 (617)
T TIGR00204 459 ---DDGPIAVRYPRGN 471 (617)
T ss_pred ---CCCCEEEEEccCC
Confidence 3599999999763
No 224
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=86.53 E-value=7.4 Score=37.64 Aligned_cols=88 Identities=11% Similarity=0.049 Sum_probs=51.2
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcc-----ccc-----ccC-CCChHHHHHHhhhceeEEE---EeCChhhHH
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRI-----LHH-----TIG-LPDFTQELRCFQAITCSQA---VVNNLGDAH 169 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~-----~~~-----~~~-~~~~~d~~~~~~~~~k~~~---~v~~~~~~~ 169 (545)
.+..+.++...++|+++|.-+......-.+.. ..+ ..+ .....|...+.+.+-.... ++.+++++.
T Consensus 103 g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~ 182 (237)
T cd02018 103 GFGALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFL 182 (237)
T ss_pred cHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHH
Confidence 46677777789999999988755432111100 000 000 0011356677777744444 366666665
Q ss_pred HHHHHHHHHhhh-CCCcEEEEeCCCCC
Q 009060 170 ELIDTAISTALK-ESKPVYISISCNLP 195 (545)
Q Consensus 170 ~~l~~A~~~a~~-~~GPV~l~iP~dv~ 195 (545)
..++ .|.. .+||++|++..+..
T Consensus 183 ~al~----~al~~~~GP~lI~v~i~c~ 205 (237)
T cd02018 183 KVVK----EAISRTDGPTFIHAYTPCI 205 (237)
T ss_pred HHHH----HHHhcCCCCEEEEEeCCCC
Confidence 5544 4554 68999999998863
No 225
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=86.36 E-value=35 Score=35.27 Aligned_cols=158 Identities=15% Similarity=0.086 Sum_probs=90.8
Q ss_pred CccHHHHHHHHHHHcCC-CEEEecCCCChHHHHHhhhcC---CCCeEEecCchhHHHHHHhHHhhhcC--ceEEEEcCCc
Q 009060 26 VGTLGRHLARRLVEIGA-KDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRG--VGACVVTFTV 99 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV-~~vFg~pG~~~~~l~~al~~~---~~i~~i~~~hE~~A~~~A~gyar~tg--~gv~~~t~Gp 99 (545)
.++-.++|-..++...= +.|+.-.|.....++..-.+. ..-+++..-.=..+.-+|.|.+.+.. +.+|+. |=
T Consensus 171 ~~~r~~ai~~i~~~l~~~~iVV~~~G~~s~el~~~~~~~~~~~~~~f~~~GsMG~a~p~AlG~ala~p~r~Vv~i~--GD 248 (361)
T TIGR03297 171 LMTREEAIAAILDHLPDNTVIVSTTGKTSRELYELRDRIGQGHARDFLTVGSMGHASQIALGLALARPDQRVVCLD--GD 248 (361)
T ss_pred CCCHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHhhcccccCCCCceEeechhhhHHHHHHHHHHHCCCCCEEEEE--Ch
Confidence 37778888777777775 345555565554444432110 02334433222334557788776654 455554 44
Q ss_pred chHH-HHHHHHHhHhcCC-cEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhce-eEEEEeCChhhHHHHHHHHH
Q 009060 100 GGLS-VLNAIAGAYSENL-PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAIT-CSQAVVNNLGDAHELIDTAI 176 (545)
Q Consensus 100 G~~n-~~~~l~~A~~~~~-Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-k~~~~v~~~~~~~~~l~~A~ 176 (545)
|... .+..+..+...+. |+++|.-+-.....-.+ +.+.. ...|...+++.+- .+..++.+++++.+.+++|
T Consensus 249 Gsflm~~~eL~t~~~~~~~nli~VVlNNg~~~~~g~---q~~~~--~~~d~~~iA~a~G~~~~~~v~~~~eL~~al~~a- 322 (361)
T TIGR03297 249 GAALMHMGGLATIGTQGPANLIHVLFNNGAHDSVGG---QPTVS--QHLDFAQIAKACGYAKVYEVSTLEELETALTAA- 322 (361)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEcCccccccCC---cCCCC--CCCCHHHHHHHCCCceEEEeCCHHHHHHHHHHH-
Confidence 4432 3567777776664 78888876554321111 11111 1135566777764 3567888887776666555
Q ss_pred HHhhhCCCcEEEEeCCCC
Q 009060 177 STALKESKPVYISISCNL 194 (545)
Q Consensus 177 ~~a~~~~GPV~l~iP~dv 194 (545)
...+||++|++..+-
T Consensus 323 ---~~~~gp~lIeV~v~~ 337 (361)
T TIGR03297 323 ---SSANGPRLIEVKVRP 337 (361)
T ss_pred ---HhCCCcEEEEEEecC
Confidence 445899999998874
No 226
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=86.32 E-value=26 Score=32.21 Aligned_cols=103 Identities=17% Similarity=0.109 Sum_probs=60.0
Q ss_pred HHHhHHhhhcC-ceEEEEcCCcchHHH-HHHHHHhHhcCC-cEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhc
Q 009060 79 YAADGYARSRG-VGACVVTFTVGGLSV-LNAIAGAYSENL-PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAI 155 (545)
Q Consensus 79 ~~A~gyar~tg-~gv~~~t~GpG~~n~-~~~l~~A~~~~~-Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 155 (545)
-+|.|.+.+.. +.+|+ .|=|...+ +..+.++...+. |+++|.-+......... +.... ....|..++.+.+
T Consensus 49 p~AiGaala~~~~vv~i--~GDG~f~m~~~el~ta~~~~~~~l~vvV~NN~~~~~~~~---~~~~~-~~~~d~~~lA~a~ 122 (179)
T cd03372 49 SIGLGLALAQPRKVIVI--DGDGSLLMNLGALATIAAEKPKNLIIVVLDNGAYGSTGN---QPTHA-GKKTDLEAVAKAC 122 (179)
T ss_pred HHHHHHHhcCCCcEEEE--ECCcHHHhCHHHHHHHHHcCCCCEEEEEEcCccccccCC---CCCCC-CCCCCHHHHHHHc
Confidence 36667665543 44444 46665543 678888888875 68777655433211111 00011 1113556777777
Q ss_pred eeEEEEeC-ChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 156 TCSQAVVN-NLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 156 ~k~~~~v~-~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
--...++. +++++.+.+++| . +||..|++..|
T Consensus 123 G~~~~~v~~~~~el~~al~~a----~--~gp~lIev~~~ 155 (179)
T cd03372 123 GLDNVATVASEEAFEKAVEQA----L--DGPSFIHVKIK 155 (179)
T ss_pred CCCeEEecCCHHHHHHHHHHh----c--CCCEEEEEEEc
Confidence 55556776 666665555555 4 68999999987
No 227
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=86.15 E-value=5.1 Score=41.03 Aligned_cols=96 Identities=17% Similarity=0.202 Sum_probs=62.8
Q ss_pred eEEEEcCCcchHH---HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChh-
Q 009060 91 GACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLG- 166 (545)
Q Consensus 91 gv~~~t~GpG~~n---~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~- 166 (545)
.++++..|=|.++ ..-++..|...++|+|+|.-+.... .+.. .+... ...+.....+.+--...+|...+
T Consensus 158 ~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~-i~~~--~~~~~---~~~d~a~~a~a~G~~~~~Vdg~d~ 231 (341)
T CHL00149 158 RVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWA-IGMA--HHRST---SIPEIHKKAEAFGLPGIEVDGMDV 231 (341)
T ss_pred CEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCee-eecc--hhhee---CCccHHHHHHhCCCCEEEEeCCCH
Confidence 5666677888877 2335677888899999998764421 1110 01011 11345566777655667776654
Q ss_pred -hHHHHHHHHHHHhhhCCCcEEEEeCC
Q 009060 167 -DAHELIDTAISTALKESKPVYISISC 192 (545)
Q Consensus 167 -~~~~~l~~A~~~a~~~~GPV~l~iP~ 192 (545)
.+.+.+.+|++.|+..+||+.|++-.
T Consensus 232 ~av~~a~~~A~~~ar~~~gP~lIev~t 258 (341)
T CHL00149 232 LAVREVAKEAVERARQGDGPTLIEALT 258 (341)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 45777889999998889999999864
No 228
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=85.96 E-value=16 Score=40.30 Aligned_cols=112 Identities=13% Similarity=0.019 Sum_probs=71.9
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCC-Cccccc--ccCC-CChHHHHH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGT-NRILHH--TIGL-PDFTQELR 150 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~-~~~~~~--~~~~-~~~~d~~~ 150 (545)
+.-+|.|.+.+.. +.+|++--| ++.-.+..|..|...++|+++|.-+......-+ ....+. ..+. ....|..+
T Consensus 413 ~lpaAiGa~la~p~r~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~ 491 (574)
T PRK09124 413 AMPQALGAQAAHPGRQVVALSGDG-GFSMLMGDFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTDLHNPDFAA 491 (574)
T ss_pred hHHHHHHHHHhCCCCeEEEEecCc-HHhccHHHHHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCccccCcCCCCCHHH
Confidence 5667888776653 455554333 444456889999999999999887654321100 000000 0010 01135678
Q ss_pred HhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 151 CFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 151 ~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
+.+.+-....++++++++.+.+++|+. .+||+.|++..|
T Consensus 492 lA~a~G~~~~~v~~~~eL~~al~~a~~----~~~p~lIev~i~ 530 (574)
T PRK09124 492 IAEACGITGIRVEKASELDGALQRAFA----HDGPALVDVVTA 530 (574)
T ss_pred HHHHCCCeEEEeCCHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 888887788999999888777777653 578999999987
No 229
>PRK08611 pyruvate oxidase; Provisional
Probab=85.46 E-value=3.8 Score=45.33 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=71.9
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCC-ccccc--ccCC-CChHHHHH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN-RILHH--TIGL-PDFTQELR 150 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~-~~~~~--~~~~-~~~~d~~~ 150 (545)
+.-+|.|.+.+.. +.+|++--| |+.-.+..|..|...++|+++|.-+......-+. ...+. ..+. ....|...
T Consensus 413 glpaaiGa~la~p~~~Vv~i~GDG-sf~m~~~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~ 491 (576)
T PRK08611 413 GLPGAIAAKIAFPDRQAIAICGDG-GFSMVMQDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEYAIDLSDMDYAK 491 (576)
T ss_pred hHHHHHHHHHhCCCCcEEEEEccc-HHhhhHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcccccCCCCCHHH
Confidence 4456778777663 566665443 3333468999999999999988877544321000 00000 0000 01135677
Q ss_pred HhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 151 CFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 151 ~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
+.+.+-....++++++++.+.+++|+ ..+||+.|++..|-
T Consensus 492 lA~a~G~~~~~v~~~~eL~~al~~a~----~~~~p~lIeV~vd~ 531 (576)
T PRK08611 492 FAEACGGKGYRVEKAEELDPAFEEAL----AQDKPVIIDVYVDP 531 (576)
T ss_pred HHHHCCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 88888777889999888877777665 45899999999873
No 230
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=85.37 E-value=2.8 Score=45.86 Aligned_cols=108 Identities=16% Similarity=0.065 Sum_probs=66.9
Q ss_pred HHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCC-----CChH-H-HHH
Q 009060 80 AADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGL-----PDFT-Q-ELR 150 (545)
Q Consensus 80 ~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~-----~~~~-d-~~~ 150 (545)
+|.|.+.+.. ..+|++--|.-..| +.-|..|...++|+++|.-+......-+. -|..... .++. . ...
T Consensus 416 aAIGAkla~P~r~Vv~i~GDG~F~m~-~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~--~q~~~~~~~~~~~~~~~~~f~k 492 (550)
T COG0028 416 AAIGAKLAAPDRKVVAIAGDGGFMMN-GQELETAVRYGLPVKIVVLNNGGYGMVRQ--WQELFYGGRYSGTDLGNPDFVK 492 (550)
T ss_pred HHHHHHhhCCCCcEEEEEcccHHhcc-HHHHHHHHHhCCCEEEEEEECCccccchH--HHHHhcCCCcceeecCCccHHH
Confidence 6677555554 46666554444444 78899999999999998876543211110 0000000 0000 1 457
Q ss_pred HhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 151 CFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 151 ~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
+.+.+--...++++++++.+.+++ |...++|+.|+++.|-
T Consensus 493 lAea~G~~g~~v~~~~el~~al~~----al~~~~p~lidv~id~ 532 (550)
T COG0028 493 LAEAYGAKGIRVETPEELEEALEE----ALASDGPVLIDVVVDP 532 (550)
T ss_pred HHHHcCCeeEEeCCHHHHHHHHHH----HHhCCCCEEEEEEecC
Confidence 777777778889888777665555 5556899999999984
No 231
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=85.35 E-value=3.2 Score=45.81 Aligned_cols=115 Identities=16% Similarity=0.036 Sum_probs=72.4
Q ss_pred HHHHHhHHhhhc-C-ceEEEEcCCcchHHHH---HHHHHhHhcCCcEEEEeCCCCCcccCCC--ccc-c-------ccc-
Q 009060 77 AGYAADGYARSR-G-VGACVVTFTVGGLSVL---NAIAGAYSENLPVICIVGGPNSNDYGTN--RIL-H-------HTI- 140 (545)
Q Consensus 77 A~~~A~gyar~t-g-~gv~~~t~GpG~~n~~---~~l~~A~~~~~Pllvi~g~~~~~~~~~~--~~~-~-------~~~- 140 (545)
+.-+|.|++.++ + +.+|++ |=|..++. ..+..|...+.|+++|.-+......-+. ... . +..
T Consensus 435 ~lp~aiGa~la~p~~~vv~i~--GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~ 512 (569)
T PRK08327 435 ALGAALGAKLATPDRLVIATV--GDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFP 512 (569)
T ss_pred chHHHHHHhhcCCCCeEEEEe--cCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccccccccccc
Confidence 345677766665 2 555554 54544332 3467788899999999877643211110 000 0 000
Q ss_pred C--CCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 141 G--LPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 141 ~--~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
+ .....|...+.+.+--...++++++++.+.+++|++...++.||+.|++..|
T Consensus 513 ~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~~~~gp~liev~v~ 567 (569)
T PRK08327 513 GTDFDPRPDFAKIAEAFGGYGERVEDPEELKGALRRALAAVRKGRRSAVLDVIVD 567 (569)
T ss_pred cccCCCCCCHHHHHHhCCCCceEeCCHHHHHHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 0 0011355678888766788999999999999999887666678999999876
No 232
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=85.31 E-value=0.78 Score=46.04 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHh---CCceEeCCCCccCCCCCCCCccceecCCC----------
Q 009060 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT---GYPIAIMPSGKGLVPEHHPHFIGTYWGAV---------- 291 (545)
Q Consensus 225 i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~---~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~---------- 291 (545)
-++++++|..|+..+|+=|.|-.-++++..++|++|++ |++|=- .-||-. |...|++
T Consensus 298 aedaA~~l~nA~sVIIvPGYGmAVAQAQh~v~E~~~~L~~~Gv~Vrf---------aIHPVA-GRmPGHMNVLLAEA~Vp 367 (463)
T COG1282 298 AEDAAELLKNASSVIIVPGYGMAVAQAQHPVAEITEKLRARGVNVRF---------AIHPVA-GRMPGHMNVLLAEAKVP 367 (463)
T ss_pred HHHHHHHHhCCCeEEEecCchHHHHhhhhHHHHHHHHHHhcCCeeeE---------eecccc-cCCCcchhhhhhhccCC
Confidence 46788999999999999999988877877777777665 444421 123321 1112221
Q ss_pred -----CCHHHHHHhhcCCEEEEeCCC
Q 009060 292 -----SSSFCGEIVESADAYVFVGPI 312 (545)
Q Consensus 292 -----~~~~~~~~l~~aD~vl~lG~~ 312 (545)
--++.|+-+.+.|++|++|..
T Consensus 368 Yd~v~emddIN~dF~~tDVvlVIGAN 393 (463)
T COG1282 368 YDIVLEMDEINDDFADTDVVLVIGAN 393 (463)
T ss_pred HHHHhhHHhhcchhccccEEEEEccC
Confidence 112345556789999999975
No 233
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=85.22 E-value=1.7 Score=42.26 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=44.5
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCccccccc--CCCCCcEEEEcCCcceecCC-CccccccHHHHHHHHHHHh
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSALAKKL 362 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~-~~~~~~d~~~~l~~L~~~l 362 (545)
.+.+.++++|++|++|+++.-.....+.. ..++.++|.|+.++..+... ...-..|+.++|..|.+.+
T Consensus 170 ~a~~~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 170 EAYEALEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTPLDSLFDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred HHHHHHhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCCCCCCccCEEEECCHHHHHHHHHHHh
Confidence 34566789999999999875433322222 23577899999998766411 1222347888888887654
No 234
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=85.13 E-value=0.4 Score=50.39 Aligned_cols=78 Identities=31% Similarity=0.355 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHh---CCceEeCCCCccCCCCCCCCccceecCC-----------
Q 009060 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT---GYPIAIMPSGKGLVPEHHPHFIGTYWGA----------- 290 (545)
Q Consensus 225 i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~---~~Pv~tt~~~kg~~~~~hpl~~G~~~G~----------- 290 (545)
.++++++|..|||.+|+=|+|-.-++++.+++|+++.| |.-|-- .-||-. |...|+
T Consensus 297 ~~~~a~~l~~A~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~f---------aIHPVA-GRMPGHMNVLLAEa~Vp 366 (463)
T PF02233_consen 297 AEEVAEMLANAKKVVIVPGYGMAVAQAQHAVAELADLLEERGVEVKF---------AIHPVA-GRMPGHMNVLLAEANVP 366 (463)
T ss_dssp HHHHHHHHHH-SEEEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEE---------EE-TTS-SSSTTHHHHHHHHCT--
T ss_pred HHHHHHHHHhcCceEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEE---------Eecccc-CCCCCcceEEEEecCCC
Confidence 46788999999999999999998888888888877665 333211 123321 111111
Q ss_pred ----CCCHHHHHHhhcCCEEEEeCCC
Q 009060 291 ----VSSSFCGEIVESADAYVFVGPI 312 (545)
Q Consensus 291 ----~~~~~~~~~l~~aD~vl~lG~~ 312 (545)
..-++.|.-+.+.|++|++|..
T Consensus 367 Yd~~~emdeiN~~f~~~Dv~lViGAN 392 (463)
T PF02233_consen 367 YDIVKEMDEINPDFPDTDVVLVIGAN 392 (463)
T ss_dssp GGGEEEHHHHGGGGGG-SEEEEES-S
T ss_pred HHHHhhhhhcccchhcCCEEEEeccc
Confidence 1114567778899999999976
No 235
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=85.12 E-value=12 Score=41.25 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=71.0
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccC--------CCcccccccCCCChH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYG--------TNRILHHTIGLPDFT 146 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~--------~~~~~~~~~~~~~~~ 146 (545)
+.-+|.|++.+.. +.+|++--|. +.-....|..|...++|+++|.-+......- .+.... ... ....
T Consensus 426 ~lp~aiGa~la~p~~~vv~i~GDG~-f~~~~~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~~~~~-~~~-~~~~ 502 (574)
T PRK06882 426 GLPAAIGVKFAHPEATVVCVTGDGS-IQMNIQELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGRHSQ-VYM-NSLP 502 (574)
T ss_pred hhHHHHHHHhhcCCCcEEEEEcchh-hhccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCCcccc-cCC-CCCC
Confidence 5567888776653 4555543333 3333578999999999999998875532100 000000 000 0113
Q ss_pred HHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 147 QELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 147 d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
|...+.+.+--...++++++++...+++|+.. .++|+.|++..|-
T Consensus 503 d~~~la~a~G~~~~~v~~~~eL~~al~~a~~~---~~~p~liev~i~~ 547 (574)
T PRK06882 503 DFAKLAEAYGHVGIQIDTPDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred CHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence 55678888877788999998887777776653 3689999999884
No 236
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=85.04 E-value=7.7 Score=42.88 Aligned_cols=152 Identities=16% Similarity=0.090 Sum_probs=86.6
Q ss_pred CccHHHHHHHHHHHcCCC--EEEecCCC-C-hHHHHHhhhc-CCCCeEE-ecCchhHHHHHHhHHhhhcC-ceEEEEcCC
Q 009060 26 VGTLGRHLARRLVEIGAK--DVFSVPGD-F-NLTLLDHLIA-EPELNLV-GCCNELNAGYAADGYARSRG-VGACVVTFT 98 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~--~vFg~pG~-~-~~~l~~al~~-~~~i~~i-~~~hE~~A~~~A~gyar~tg-~gv~~~t~G 98 (545)
.++..+++.+.|.+..-+ .++.+-.. . ...+ +.+.+ .| =|++ ...-|++++.+|.|.|. .| ..++. +..
T Consensus 277 ~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~~-~~f~~~fP-~R~id~GIaEq~~v~~AaGlA~-~G~~Pvv~-~fs 352 (581)
T PRK12315 277 GESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFGL-KEFRKKYP-DQYVDVGIAEQESVAFASGIAA-NGARPVIF-VNS 352 (581)
T ss_pred CcCHHHHHHHHHHHHhccCCCEEEEeCccccccCc-HHHHHhcc-ccccCCCchHHHHHHHHHHHHH-CcCeEEEE-eeH
Confidence 456677777777765433 45544221 1 1112 33432 23 2555 46799999999999998 57 55553 333
Q ss_pred cchHHHHHHHH-HhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEE-EeCChhhHHHHHHHHH
Q 009060 99 VGGLSVLNAIA-GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVNNLGDAHELIDTAI 176 (545)
Q Consensus 99 pG~~n~~~~l~-~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~-~v~~~~~~~~~l~~A~ 176 (545)
+=+.-++.-|. ++...+.||+++....... + +...|| .+.++.+++.+..... .+.++.++..+++.
T Consensus 353 ~Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~--~-dG~TH~------~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~-- 421 (581)
T PRK12315 353 TFLQRAYDQLSHDLAINNNPAVMIVFGGSIS--G-NDVTHL------GIFDIPMISNIPNLVYLAPTTKEELIAMLEW-- 421 (581)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEECCccc--C-CCcccc------ccHHHHHHhcCCCCEEEecCCHHHHHHHHHH--
Confidence 22223333222 2456789999987533222 1 112333 2345788988865443 45566666555554
Q ss_pred HHhhhC-CCcEEEEeCCCC
Q 009060 177 STALKE-SKPVYISISCNL 194 (545)
Q Consensus 177 ~~a~~~-~GPV~l~iP~dv 194 (545)
|... +|||+|.+|...
T Consensus 422 --a~~~~~gP~~ir~~r~~ 438 (581)
T PRK12315 422 --ALTQHEHPVAIRVPEHG 438 (581)
T ss_pred --HHhCCCCcEEEEEcCCc
Confidence 4443 799999999764
No 237
>PRK06154 hypothetical protein; Provisional
Probab=85.03 E-value=5.1 Score=44.17 Aligned_cols=114 Identities=11% Similarity=-0.025 Sum_probs=73.6
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchH-HHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcc-cc--cccCC-CChHHHH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRI-LH--HTIGL-PDFTQEL 149 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~-n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~-~~--~~~~~-~~~~d~~ 149 (545)
+.-+|.|.+.+.. +.+|++ |=|.. =....|..|...++|+++|.-+......-+... .+ ...+. .+ .|..
T Consensus 436 glpaaiGa~la~p~r~Vv~i~--GDG~f~m~~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~~~~~~-~df~ 512 (565)
T PRK06154 436 GLGLAMGAKLARPDALVINLW--GDAAFGMTGMDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYRATDIS-GDYA 512 (565)
T ss_pred HHHHHHHHHHhCCCCcEEEEE--cchHHhccHHHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCcccccCCC-CCHH
Confidence 4557778666654 555554 44433 334688999999999999987755332111000 00 00000 01 2567
Q ss_pred HHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 150 RCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 150 ~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
++.+.+-....++++++++...+++|+.... ..+|+.|++..|-
T Consensus 513 ~lA~a~G~~g~~V~~~~el~~al~~a~~~~~-~~~p~lIev~v~~ 556 (565)
T PRK06154 513 AIARALGGYGERVEDPEMLVPALLRALRKVK-EGTPALLEVITSE 556 (565)
T ss_pred HHHHHCCCeEEEECCHHHHHHHHHHHHhhcc-CCCeEEEEEEeCh
Confidence 8888888889999999999888888886432 3679999998763
No 238
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=84.88 E-value=18 Score=39.95 Aligned_cols=113 Identities=13% Similarity=-0.022 Sum_probs=70.9
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCc--c--cccccC-CC-ChHHH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNR--I--LHHTIG-LP-DFTQE 148 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~--~--~~~~~~-~~-~~~d~ 148 (545)
+.-+|.|++.+.. +.+|++--|. +.=.+..|..|...++|++++.-+......-+.. . -+.... .. ...|.
T Consensus 419 ~l~~aiGa~la~p~~~vv~i~GDG~-f~m~~~eL~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~~~~~~~~~~~d~ 497 (563)
T PRK08527 419 GLPAALGAKLAVPDKVVINFTGDGS-ILMNIQELMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEERYSETDLSTQPDF 497 (563)
T ss_pred hHHHHHHHHHhCCCCcEEEEecCch-hcccHHHHHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCceeeccCCCCCCH
Confidence 5557888877764 5555543332 2223467888999999999888765532111000 0 000000 00 01356
Q ss_pred HHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 149 LRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 149 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
.++.+.+--+..++++++++.+.+++|+. ..||+.|++..|-
T Consensus 498 ~~~a~a~G~~~~~v~~~~el~~al~~a~~----~~~p~lieV~v~~ 539 (563)
T PRK08527 498 VKLAESFGGIGFRVTTKEEFDKALKEALE----SDKVALIDVKIDR 539 (563)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 77888887778899999888777777653 4789999999884
No 239
>PRK05858 hypothetical protein; Provisional
Probab=84.85 E-value=3.2 Score=45.53 Aligned_cols=110 Identities=14% Similarity=0.062 Sum_probs=69.4
Q ss_pred HHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccC------CCChHHHH
Q 009060 78 GYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIG------LPDFTQEL 149 (545)
Q Consensus 78 ~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~------~~~~~d~~ 149 (545)
.-+|.|.+.+.. +.+|++--| |++-.+.-|..|...++|+++|.-+......-+. ..+...+ ...-.|..
T Consensus 413 lp~aiGa~la~p~r~vv~i~GDG-~f~~~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~-~~~~~~~~~~~~~~~~~~d~~ 490 (542)
T PRK05858 413 PGYALAARLARPSRQVVLLQGDG-AFGFSLMDVDTLVRHNLPVVSVIGNNGIWGLEKH-PMEALYGYDVAADLRPGTRYD 490 (542)
T ss_pred hhHHHHHHHhCCCCcEEEEEcCc-hhcCcHHHHHHHHHcCCCEEEEEEeCCchhhHHH-HHHHhcCCccccccCCCCCHH
Confidence 345666555543 555554333 3434467888888999999998876543321110 0000000 00113567
Q ss_pred HHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 150 RCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 150 ~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
++.+.+-....++++++++.+.+++|++ ..||+.|++..|
T Consensus 491 ~lA~a~G~~~~~v~~~~eL~~al~~a~~----~~~p~lIev~~~ 530 (542)
T PRK05858 491 EVVRALGGHGELVTVPAELGPALERAFA----SGVPYLVNVLTD 530 (542)
T ss_pred HHHHHCCCeEEEeCCHHHHHHHHHHHHh----CCCcEEEEEEEC
Confidence 7888887788999999999888877764 479999999987
No 240
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=84.71 E-value=16 Score=36.26 Aligned_cols=156 Identities=16% Similarity=0.107 Sum_probs=81.5
Q ss_pred cHHHHHHHHHHHcCCC--EEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC--ceEEEEcCCcchH-
Q 009060 28 TLGRHLARRLVEIGAK--DVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG--VGACVVTFTVGGL- 102 (545)
Q Consensus 28 ~~a~~i~~~L~~~GV~--~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg--~gv~~~t~GpG~~- 102 (545)
..-.+|.+.|.+.|+. ..+-+.|......+....+ .....+.|-. +.-+|.|...+.. +.|+++ |=|..
T Consensus 18 ~i~~~~~~a~~~l~~~p~d~ivvsdiG~~~~~~~~~~---~~~~~~~mG~-alp~AiGaklA~pd~~VVai~--GDG~~~ 91 (280)
T PRK11869 18 GIRNALMKALSELNLKPRQVVIVSGIGQAAKMPHYIN---VNGFHTLHGR-AIPAATAVKATNPELTVIAEG--GDGDMY 91 (280)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeCchHhhhHHHHcc---CCCCCccccc-HHHHHHHHHHHCCCCcEEEEE--CchHHh
Confidence 3456788888888865 3444444333322222222 1223333444 4445666555543 455554 44443
Q ss_pred -HHHHHHHHhHhcCCcEEEEeCCCCCcccCCCccc------cc----ccCC-CChHHHHHHhhhce-eEEEE--eCChhh
Q 009060 103 -SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRIL------HH----TIGL-PDFTQELRCFQAIT-CSQAV--VNNLGD 167 (545)
Q Consensus 103 -n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~------~~----~~~~-~~~~d~~~~~~~~~-k~~~~--v~~~~~ 167 (545)
+.++.+..|...++||++|.-+......-++... .. ..+. ..-.|...+.+.+- ++..+ +.++++
T Consensus 92 ~iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~ 171 (280)
T PRK11869 92 AEGGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEE 171 (280)
T ss_pred hCcHHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHH
Confidence 3389999999999999999866432210000000 00 0010 01135566666663 33333 556666
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 168 AHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 168 ~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
+.+.+. .|...+||++|++-.-
T Consensus 172 l~~~i~----~Al~~~Gp~lIeV~~p 193 (280)
T PRK11869 172 TKEILK----EAIKHKGLAIVDIFQP 193 (280)
T ss_pred HHHHHH----HHHhCCCCEEEEEECC
Confidence 655554 4555689999987654
No 241
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=84.49 E-value=6.9 Score=41.39 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=60.3
Q ss_pred eEEEEcCCcchHH---HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCC--h
Q 009060 91 GACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNN--L 165 (545)
Q Consensus 91 gv~~~t~GpG~~n---~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~--~ 165 (545)
.++++..|=|.++ ..-++--|...++|+|++.-+.... .+.- +. .+.. ..+.....+.+--...+|.. +
T Consensus 224 ~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~ya-ig~~---~~-~~t~-~~dia~~A~a~G~~~~~VDG~D~ 297 (433)
T PLN02374 224 DVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMS---HL-RATS-DPEIWKKGPAFGMPGVHVDGMDV 297 (433)
T ss_pred CEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEe-ecce---ee-eccC-CCCHHHHHHhcCCcEEEECCCCH
Confidence 5666677877766 3346777889999999999653211 1110 00 0100 11334556666555566654 3
Q ss_pred hhHHHHHHHHHHHhhhCCCcEEEEeCC
Q 009060 166 GDAHELIDTAISTALKESKPVYISISC 192 (545)
Q Consensus 166 ~~~~~~l~~A~~~a~~~~GPV~l~iP~ 192 (545)
..+.+.+.+|++.|+...||+.|++-.
T Consensus 298 ~av~~a~~~A~~~Ar~g~gP~LIe~~t 324 (433)
T PLN02374 298 LKVREVAKEAIERARRGEGPTLVECET 324 (433)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 456778889999999889999999754
No 242
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=84.42 E-value=9.7 Score=42.15 Aligned_cols=152 Identities=15% Similarity=0.164 Sum_probs=87.7
Q ss_pred ccHHHHHHHHHHHcC--CCEEEecCCC-C-hHHHHHhhhc-CCCCeEE-ecCchhHHHHHHhHHhhhcC-ceEEEEcCCc
Q 009060 27 GTLGRHLARRLVEIG--AKDVFSVPGD-F-NLTLLDHLIA-EPELNLV-GCCNELNAGYAADGYARSRG-VGACVVTFTV 99 (545)
Q Consensus 27 ~~~a~~i~~~L~~~G--V~~vFg~pG~-~-~~~l~~al~~-~~~i~~i-~~~hE~~A~~~A~gyar~tg-~gv~~~t~Gp 99 (545)
++..+++.+.|.+.. -..++++.++ . ...+ ..+.+ .++ |++ ...-|++.+.+|.|.|. .| ..++.+ ..+
T Consensus 279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~-~~f~~~~p~-R~i~~GIaE~~mvg~A~GlA~-~G~~p~~~~-f~~ 354 (580)
T PRK05444 279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGTGL-VKFSKRFPD-RYFDVGIAEQHAVTFAAGLAT-EGLKPVVAI-YST 354 (580)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCH-HHHHHHhhh-hccCCChHHHHHHHHHHHHHH-CCCeeEEEe-eHH
Confidence 566777777776653 2345543222 1 1112 22322 222 444 46789999999999999 57 455543 443
Q ss_pred chHHHHHHHHH-hHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeE-EEEeCChhhHHHHHHHHHH
Q 009060 100 GGLSVLNAIAG-AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDTAIS 177 (545)
Q Consensus 100 G~~n~~~~l~~-A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~ 177 (545)
=+.-++.-+.. +-..+.|++++....... +.+...|+ .+.++.+++.+-.. ...+.++.++..+++.
T Consensus 355 F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~--g~dG~tH~------~~edia~lr~iP~l~V~~Psd~~e~~~~l~~--- 423 (580)
T PRK05444 355 FLQRAYDQVIHDVALQNLPVTFAIDRAGLV--GADGPTHQ------GAFDLSYLRCIPNMVIMAPSDENELRQMLYT--- 423 (580)
T ss_pred HHHHHHHHHHHHhhhcCCCEEEEEeCCCcC--CCCCcccc------ccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH---
Confidence 33344454444 556889999997543321 22112333 24457888887543 3556666666555554
Q ss_pred HhhhC-CCcEEEEeCCCC
Q 009060 178 TALKE-SKPVYISISCNL 194 (545)
Q Consensus 178 ~a~~~-~GPV~l~iP~dv 194 (545)
|... ++||+|.+|...
T Consensus 424 -a~~~~~~P~~ir~~r~~ 440 (580)
T PRK05444 424 -ALAYDDGPIAIRYPRGN 440 (580)
T ss_pred -HHhCCCCcEEEEecCCC
Confidence 4443 799999999765
No 243
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=84.19 E-value=16 Score=41.98 Aligned_cols=179 Identities=15% Similarity=0.114 Sum_probs=102.6
Q ss_pred EEecCchhHHHH--HHhHHhhhc-Cc--eEEEEcCCc-chHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccC
Q 009060 68 LVGCCNELNAGY--AADGYARSR-GV--GACVVTFTV-GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIG 141 (545)
Q Consensus 68 ~i~~~hE~~A~~--~A~gyar~t-g~--gv~~~t~Gp-G~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~ 141 (545)
+-....|++++. +|.|.+..+ |. -.+.++..+ ++.=+.--+-.+-..+.++.+|.+.......+..-..|+
T Consensus 563 ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~eG~tHq--- 639 (889)
T TIGR03186 563 LEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGEGLQHQ--- 639 (889)
T ss_pred EEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCCccccc---
Confidence 335779999997 888877764 32 334444444 344555666666677788888877766532333223333
Q ss_pred CCChHHHHHHhhhce-eEEEEeCChhhHHHHHHHHHHHhhhC--CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCc
Q 009060 142 LPDFTQELRCFQAIT-CSQAVVNNLGDAHELIDTAISTALKE--SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQ 218 (545)
Q Consensus 142 ~~~~~d~~~~~~~~~-k~~~~v~~~~~~~~~l~~A~~~a~~~--~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~ 218 (545)
....+.+++.+- .-.+.+.++.++..+++.+++.+... .||+||.+...-.. .+..... .. ..
T Consensus 640 ---~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~--~p~~~~~--~~--~~----- 705 (889)
T TIGR03186 640 ---DGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYA--QPSLPED--RL--DA----- 705 (889)
T ss_pred ---chHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCC--CCCcCCC--cc--cc-----
Confidence 223467777763 45577888888999999999866553 59999999865211 1110000 00 00
Q ss_pred hhhHHHHHHHHHHHHhc---CCCEEEcCccccccchHHHHHHHHHHhCCc
Q 009060 219 LGLEAAVEATADFLNKA---VKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (545)
Q Consensus 219 ~~~~~~i~~~~~~l~~a---~rpvi~~G~g~~~~~a~~~l~~lae~~~~P 265 (545)
-...+-+....|.+. ..-+.|+|.|..-.++.++...|++++|+-
T Consensus 706 --~~~gi~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~ 753 (889)
T TIGR03186 706 --VRRGILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGID 753 (889)
T ss_pred --hhcchhheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCC
Confidence 000000111223321 123667777776667777777888776553
No 244
>PLN02573 pyruvate decarboxylase
Probab=84.18 E-value=6.2 Score=43.65 Aligned_cols=112 Identities=16% Similarity=0.098 Sum_probs=70.1
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchH-HHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhh
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQ 153 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~-n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 153 (545)
+.-+|.|.+.+.. +.||++ |=|.. =.+.-|..|...++|+++|.-+......-+. ..++......-.|...+.+
T Consensus 433 glpaaiGa~lA~p~r~vv~i~--GDG~f~m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~-~~~~~~~~~~~~d~~~lA~ 509 (578)
T PLN02573 433 SVGATLGYAQAAPDKRVIACI--GDGSFQVTAQDVSTMIRCGQKSIIFLINNGGYTIEVE-IHDGPYNVIKNWNYTGLVD 509 (578)
T ss_pred hhhHHHHHHHhCCCCceEEEE--eccHHHhHHHHHHHHHHcCCCCEEEEEeCCceeEEEe-ecccCccccCCCCHHHHHH
Confidence 3446778777764 455554 44433 3347899999999999999877554321110 0000011101135567777
Q ss_pred hce-----eEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 154 AIT-----CSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 154 ~~~-----k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
.+- .+..++++++++.+.+++|+.. ...||..|++..|
T Consensus 510 a~G~~~g~~~~~~V~~~~eL~~al~~a~~~--~~~~p~lieV~v~ 552 (578)
T PLN02573 510 AIHNGEGKCWTAKVRTEEELIEAIATATGE--KKDCLCFIEVIVH 552 (578)
T ss_pred HhcCcCCceeEEEecCHHHHHHHHHHHHhh--CCCCcEEEEEEcC
Confidence 763 5678999999888888777642 2478999999987
No 245
>PRK08617 acetolactate synthase; Reviewed
Probab=84.18 E-value=16 Score=40.18 Aligned_cols=109 Identities=16% Similarity=0.081 Sum_probs=68.8
Q ss_pred HHhHHhhhc-C-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCC---cccccccCC-CChHHHHHHhh
Q 009060 80 AADGYARSR-G-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN---RILHHTIGL-PDFTQELRCFQ 153 (545)
Q Consensus 80 ~A~gyar~t-g-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~---~~~~~~~~~-~~~~d~~~~~~ 153 (545)
+|.|.+.+. + +.+|++--| ++.=.++.|..|...++|+++|.-+......-+. .......+. ....|...+.+
T Consensus 422 aaiGa~la~p~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~ 500 (552)
T PRK08617 422 WAIAAALVRPGKKVVSVSGDG-GFLFSAMELETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRSSGVDFGPVDFVKYAE 500 (552)
T ss_pred HHHhhHhhcCCCcEEEEEech-HHhhhHHHHHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCcccCCCCCCCHHHHHH
Confidence 777866654 3 555554333 3333458899999999999988876543211000 000000000 00135677888
Q ss_pred hceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 154 AITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 154 ~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
.+-....++++++++.+.+++|+ ...+|..|++..|
T Consensus 501 a~G~~~~~v~~~~eL~~al~~a~----~~~~p~liev~~~ 536 (552)
T PRK08617 501 SFGAKGLRVTSPDELEPVLREAL----ATDGPVVIDIPVD 536 (552)
T ss_pred HCCCeEEEECCHHHHHHHHHHHH----hCCCcEEEEEEec
Confidence 88777889999998877777776 3578999999887
No 246
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=83.93 E-value=2.9 Score=44.08 Aligned_cols=113 Identities=25% Similarity=0.331 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCcccee-cCCCCCHHHHHH
Q 009060 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTY-WGAVSSSFCGEI 299 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~-~G~~~~~~~~~~ 299 (545)
.++.++.+++.|+++++++++.|... ..+....+.+|++.+|..+-. ...-. ..+...+.. .|... ....++
T Consensus 62 WdeAl~~ia~~l~~~~~~~~~~~~~~-~~e~~~~~~~l~~~~g~~~~~-~~~~~----~~~~~~~~~~~g~~~-~~~~di 134 (421)
T TIGR03129 62 YEEAIEKAAEILKNAKRPLIYGWSST-SCEAQRAGLELAEKLGAVIDN-TASVC----HGPSLLALQEVGWPS-CTLGEV 134 (421)
T ss_pred hHHHHHHHHHHHHhhcCCeEEEcccC-CHHHHHHHHHHHHHHCCCccc-cchhc----cccHHHHHHhcCCcc-ccHHHH
Confidence 57788999999999998877655443 334556778999998864311 00000 001111100 01111 112233
Q ss_pred hhcCCEEEEeCCCCCCCccccc-----------ccC-CCCCcEEEEcCCccee
Q 009060 300 VESADAYVFVGPIFNDYSSVGY-----------SLL-IKKEKAIIVQPHRVTV 340 (545)
Q Consensus 300 l~~aD~vl~lG~~~~~~~~~~~-----------~~~-~~~~~~i~id~d~~~~ 340 (545)
..++|+||++|+.+.+.....+ ... .++.++|.||+.....
T Consensus 135 ~~~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t 187 (421)
T TIGR03129 135 KNRADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDT 187 (421)
T ss_pred hhcCCEEEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCc
Confidence 3479999999988643221111 111 2346899998866544
No 247
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=83.92 E-value=9.7 Score=41.71 Aligned_cols=112 Identities=16% Similarity=0.050 Sum_probs=71.2
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCC---CcccccccC-CCChHHHHH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGT---NRILHHTIG-LPDFTQELR 150 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~---~~~~~~~~~-~~~~~d~~~ 150 (545)
+.-+|.|.+.+.. +.+|++--| ++.=....|..|...++|+++|.-+......-+ ........+ +....|...
T Consensus 413 ~lpaaiGa~la~~~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~d~~~ 491 (539)
T TIGR02418 413 ALPWAIGAALVRPNTKVVSVSGDG-GFLFSSMELETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRSSGVDFGPIDFVK 491 (539)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcch-hhhchHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCcccccCCCCCHHH
Confidence 4557788776653 555554333 233335789999999999999987654321100 000000000 001135678
Q ss_pred HhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 151 CFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 151 ~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
+.+.+-.+..++++++++.+.+++|+ ...||..|++..|
T Consensus 492 lA~a~G~~~~~V~~~~eL~~al~~a~----~~~~p~lIev~v~ 530 (539)
T TIGR02418 492 YAESFGAKGLRVESPDQLEPTLRQAM----EVEGPVVVDIPVD 530 (539)
T ss_pred HHHHCCCeEEEECCHHHHHHHHHHHH----hCCCCEEEEEEec
Confidence 88888888899999988877777765 3578999999987
No 248
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=83.84 E-value=18 Score=39.94 Aligned_cols=114 Identities=15% Similarity=0.078 Sum_probs=73.7
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCC-c-cc--ccccCC--CChHHH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN-R-IL--HHTIGL--PDFTQE 148 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~-~-~~--~~~~~~--~~~~d~ 148 (545)
+.-+|.|.+.+.. +.+|++--|. +.=.+..|..|...++|+++|.-+......-+. . .. +..... ....|.
T Consensus 428 glpaAiGa~la~p~r~Vv~i~GDG~-f~m~~~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~ 506 (574)
T PRK06466 428 GLPAAMGVKLAFPDQDVACVTGEGS-IQMNIQELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGRHSHSYMESLPDF 506 (574)
T ss_pred hHHHHHHHHHhCCCCeEEEEEcchh-hhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCceeecCCCCCCCH
Confidence 4557888777663 5666654443 333358899999999999999987654311000 0 00 000000 011366
Q ss_pred HHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 149 LRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 149 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
..+.+.+-.+..++++++++.+.+++|+.. .+||+.|++..|-
T Consensus 507 ~~lA~a~G~~~~~v~~~~el~~al~~a~~~---~~~p~lIev~i~~ 549 (574)
T PRK06466 507 VKLAEAYGHVGIRITDLKDLKPKLEEAFAM---KDRLVFIDIYVDR 549 (574)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 788888888889999999998888877752 3789999988873
No 249
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=83.81 E-value=17 Score=40.09 Aligned_cols=110 Identities=12% Similarity=0.073 Sum_probs=69.7
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCccccc------ccC-CCChHH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHH------TIG-LPDFTQ 147 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~------~~~-~~~~~d 147 (545)
+.-+|.|.+.+.. +.+|++--|.=..+ ..-|.+|...++|++++.-+......-+ ..|+ ... .....|
T Consensus 427 ~lp~aiGa~lA~p~~~vv~i~GDG~f~~~-~~el~Ta~~~~lpi~~vV~NN~~~~~~~--~~q~~~~~~~~~~~~~~~~d 503 (570)
T PRK06725 427 GFPAAIGAQLAKEEELVICIAGDASFQMN-IQELQTIAENNIPVKVFIINNKFLGMVR--QWQEMFYENRLSESKIGSPD 503 (570)
T ss_pred hhhHHHhhHhhcCCCeEEEEEecchhhcc-HHHHHHHHHhCCCeEEEEEECCccHHHH--HHHHHhcCCccccCcCCCCC
Confidence 4456777666653 55665544433333 4778889999999999987654321100 0000 000 001135
Q ss_pred HHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 148 ~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
..++.+.+-....++++++++.+.+++|+ ..+||+.|+++.|
T Consensus 504 ~~~~a~a~G~~~~~v~~~~~l~~al~~a~----~~~~p~liev~id 545 (570)
T PRK06725 504 FVKVAEAYGVKGLRATNSTEAKQVMLEAF----AHEGPVVVDFCVE 545 (570)
T ss_pred HHHHHHHCCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEeC
Confidence 67888888888899998888766666665 3579999999987
No 250
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=83.75 E-value=6.8 Score=43.48 Aligned_cols=115 Identities=9% Similarity=-0.043 Sum_probs=69.4
Q ss_pred HHHHhHHhhhcC--ceEEEEcCCcchH--HHHHHHHHhHhcCCcEEEEeCCCCCcccCCCccccc----ccC-CCChHHH
Q 009060 78 GYAADGYARSRG--VGACVVTFTVGGL--SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHH----TIG-LPDFTQE 148 (545)
Q Consensus 78 ~~~A~gyar~tg--~gv~~~t~GpG~~--n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~----~~~-~~~~~d~ 148 (545)
.-+|.|.+.+.. +.++++ |=|.. +.+..|.+|...++|+++|.-+......-.+..... ..+ ...-.|.
T Consensus 409 ~~~AiGa~~a~p~~~Vv~i~--GDG~f~~~g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~ 486 (595)
T TIGR03336 409 IGVASGLSKAGEKQRIVAFI--GDSTFFHTGIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISI 486 (595)
T ss_pred HHHHhhhhhcCCCCCEEEEe--ccchhhhcCHHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCH
Confidence 336677665553 444443 44433 347999999999999999887654332111000000 000 0011356
Q ss_pred HHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCCC
Q 009060 149 LRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195 (545)
Q Consensus 149 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv~ 195 (545)
..+.+.+--...++.+++++.+ +..|++.+...+||..|.+..+..
T Consensus 487 ~~ia~a~G~~~~~v~~~~~l~~-l~~al~~a~~~~gp~li~v~~~C~ 532 (595)
T TIGR03336 487 EELCRASGVEFVEVVDPLNVKE-TIEVFKAALAAEGVSVIIAKQPCV 532 (595)
T ss_pred HHHHHHcCCCEEEEeCcCCHHH-HHHHHHHHHhcCCCEEEEEcccCc
Confidence 7788888767788888876543 456666666678999999987753
No 251
>PLN02470 acetolactate synthase
Probab=83.46 E-value=32 Score=38.14 Aligned_cols=114 Identities=19% Similarity=0.123 Sum_probs=73.1
Q ss_pred HHHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccC--------CCcccccccCCC--
Q 009060 76 NAGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYG--------TNRILHHTIGLP-- 143 (545)
Q Consensus 76 ~A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~--------~~~~~~~~~~~~-- 143 (545)
-+.-+|.|.+.+.. +.+|++--| ++.=....|.+|...++|+++|.-+......- .....+..+...
T Consensus 430 ~glpaaiGa~la~p~~~Vv~i~GDG-~f~m~~~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~~ 508 (585)
T PLN02470 430 FGLPAAIGAAAANPDAIVVDIDGDG-SFIMNIQELATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKANRAHTYLGDPDA 508 (585)
T ss_pred chHHHHHHHHHhCCCCcEEEEEccc-hhhccHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCCceeeeecCcccc
Confidence 36668888777764 555554333 33333588999999999999988765532100 000000011100
Q ss_pred ---ChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 144 ---DFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 144 ---~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
...|...+.+.+--...++++++++.+.+++|+. ..+|+.|++..|-
T Consensus 509 ~~~~~~d~~~iA~a~G~~~~~v~~~~el~~al~~a~~----~~~p~lieV~i~~ 558 (585)
T PLN02470 509 EAEIFPDFLKFAEGCKIPAARVTRKSDLREAIQKMLD----TPGPYLLDVIVPH 558 (585)
T ss_pred ccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0135677888887778999999988887777764 4789999999873
No 252
>PRK05899 transketolase; Reviewed
Probab=83.35 E-value=13 Score=41.45 Aligned_cols=116 Identities=20% Similarity=0.157 Sum_probs=73.5
Q ss_pred eEEe-cCchhHHHHHHhHHhhhcCceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCCh
Q 009060 67 NLVG-CCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF 145 (545)
Q Consensus 67 ~~i~-~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~ 145 (545)
|++. ..-|++++.+|.|+|...|.-.++.|..+=+.-++..+..+...+.|++++....... .+.+...|| .
T Consensus 368 R~~d~GIaE~~~vg~A~GlA~~G~~~pv~~t~~~F~~r~~~qir~~~~~~~pv~~v~~~~G~~-~g~~G~tHq------~ 440 (624)
T PRK05899 368 RYIHYGVREFAMAAIANGLALHGGFIPFGGTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIG-VGEDGPTHQ------P 440 (624)
T ss_pred CeeeeChhHHHHHHHHHHHHHcCCCeEEEEEcHHHHHHHHHHHHHHHhcCCCEEEEEECCCcC-cCCCCCCcc------c
Confidence 5664 7799999999999998753323333444434556667777677889999886543322 222212332 3
Q ss_pred HHHHHHhhhceeE-EEEeCChhhHHHHHHHHHHHhhhC-CCcEEEEeCCC
Q 009060 146 TQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKE-SKPVYISISCN 193 (545)
Q Consensus 146 ~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~a~~~-~GPV~l~iP~d 193 (545)
..++.+++.+... ...+.+++++..+++.|+ .. ++||+|.+|..
T Consensus 441 ~edia~~r~iP~~~V~~P~d~~e~~~~l~~a~----~~~~~P~~ir~~r~ 486 (624)
T PRK05899 441 VEQLASLRAIPNLTVIRPADANETAAAWKYAL----ERKDGPSALVLTRQ 486 (624)
T ss_pred HHHHHHHHhCCCcEEEeCCCHHHHHHHHHHHH----HcCCCCEEEEEeCC
Confidence 4556788877442 345556666666555554 44 79999999864
No 253
>PRK07586 hypothetical protein; Validated
Probab=83.26 E-value=8.7 Score=41.77 Aligned_cols=143 Identities=10% Similarity=-0.023 Sum_probs=79.7
Q ss_pred CEEEecC-CCChHHHHHhhhcCCCCeEEecCchhH---HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCC
Q 009060 43 KDVFSVP-GDFNLTLLDHLIAEPELNLVGCCNELN---AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENL 116 (545)
Q Consensus 43 ~~vFg~p-G~~~~~l~~al~~~~~i~~i~~~hE~~---A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~ 116 (545)
+.++..- |+........+.-...-+++.... .+ +.-+|.|.+.+.. +.+|++--| ++.=.+.-|.+|...++
T Consensus 353 ~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lpaaiGa~lA~p~r~Vv~i~GDG-sf~m~~~EL~Ta~~~~l 430 (514)
T PRK07586 353 NAIVVDESITSGRGFFPATAGAAPHDWLTLTG-GAIGQGLPLATGAAVACPDRKVLALQGDG-SAMYTIQALWTQARENL 430 (514)
T ss_pred CeEEEeCCCcCHHHHHHhccccCCCCEEccCC-cccccHHHHHHHHHHhCCCCeEEEEEech-HHHhHHHHHHHHHHcCC
Confidence 4444443 444444444332222234554443 33 3346778777653 455554333 23334688889999999
Q ss_pred cEEEEeCCCCCcccCCC------c-cc----ccccCC-CChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCC
Q 009060 117 PVICIVGGPNSNDYGTN------R-IL----HHTIGL-PDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (545)
Q Consensus 117 Pllvi~g~~~~~~~~~~------~-~~----~~~~~~-~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~G 184 (545)
|+++|.-+......-+. . .. ...... ....|...+.+.+-....++++++++.+.+++|+ ..+|
T Consensus 431 pv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~el~~al~~a~----~~~~ 506 (514)
T PRK07586 431 DVTTVIFANRAYAILRGELARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGVPARRVTTAEEFADALAAAL----AEPG 506 (514)
T ss_pred CCEEEEEeCchhHHHHHHHHHhcCCCCCccccccccCCCCCCCHHHHHHHCCCcEEEeCCHHHHHHHHHHHH----cCCC
Confidence 99888866443211000 0 00 000000 0013567788888778899999888877777765 3478
Q ss_pred cEEEEeC
Q 009060 185 PVYISIS 191 (545)
Q Consensus 185 PV~l~iP 191 (545)
|+.|++.
T Consensus 507 p~liev~ 513 (514)
T PRK07586 507 PHLIEAV 513 (514)
T ss_pred CEEEEEE
Confidence 9999985
No 254
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=83.18 E-value=7.7 Score=42.87 Aligned_cols=113 Identities=15% Similarity=0.036 Sum_probs=70.5
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCC------CcccccccCCCChHHH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGT------NRILHHTIGLPDFTQE 148 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~------~~~~~~~~~~~~~~d~ 148 (545)
+.-+|.|.+.+.. +.++++--| |+.-....|..+...++|+++|.-+......-+ +...... . .+..|.
T Consensus 413 glpaAiGa~la~p~r~Vv~i~GDG-sf~m~~~eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~~~-~-~~~~df 489 (575)
T TIGR02720 413 GVPGAIAAKLNYPDRQVFNLAGDG-AFSMTMQDLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLIGV-D-FNDADF 489 (575)
T ss_pred hHHHHHHHHHhCCCCcEEEEEccc-HHHhhHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcccc-c-CCCCCH
Confidence 3446677555553 455554333 333345788889999999999977654332100 0000000 0 011356
Q ss_pred HHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 149 LRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 149 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
..+.+.+--...++++++++.+.+++|++ ....+|+.|++..|-
T Consensus 490 ~~iA~a~G~~~~~v~~~~el~~al~~a~~--~~~~~p~liev~i~~ 533 (575)
T TIGR02720 490 AKIAEGVGAVGFRVNKIEQLPAVFEQAKA--IKQGKPVLIDAKITG 533 (575)
T ss_pred HHHHHHCCCEEEEeCCHHHHHHHHHHHHh--hCCCCcEEEEEEeCC
Confidence 77888887677899999988888888776 234789999998873
No 255
>PRK08322 acetolactate synthase; Reviewed
Probab=83.18 E-value=22 Score=38.91 Aligned_cols=110 Identities=11% Similarity=-0.005 Sum_probs=70.1
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCccccc-----ccC-CCChHHH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHH-----TIG-LPDFTQE 148 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~-----~~~-~~~~~d~ 148 (545)
+.-+|.|++.+.. +.+|++--| ++.=.+..|.+|...++|+++|.-+......-+. .|+ ..+ +..-.|.
T Consensus 411 ~lpaaiGa~la~p~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~--~~~~~~~~~~~~~~~~~df 487 (547)
T PRK08322 411 GLPSAIAAKLVHPDRKVLAVCGDG-GFMMNSQELETAVRLGLPLVVLILNDNAYGMIRW--KQENMGFEDFGLDFGNPDF 487 (547)
T ss_pred hhHHHHHHHHhCCCCcEEEEEcch-hHhccHHHHHHHHHhCCCeEEEEEeCCCcchHHH--HHHhhcCCcccccCCCCCH
Confidence 3447788776653 555555433 2333356788899999999999876544311000 000 000 0011356
Q ss_pred HHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 149 LRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 149 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
..+.+.+-.+..++++++++.+.+++|+ ..+||+.|++..|
T Consensus 488 ~~lA~a~G~~~~~v~~~~eL~~al~~a~----~~~~p~lIev~v~ 528 (547)
T PRK08322 488 VKYAESYGAKGYRVESADDLLPTLEEAL----AQPGVHVIDCPVD 528 (547)
T ss_pred HHHHHHCCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEec
Confidence 7788888777899999888877777665 3479999999987
No 256
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=82.52 E-value=13 Score=41.41 Aligned_cols=152 Identities=10% Similarity=0.088 Sum_probs=84.8
Q ss_pred HHHHHHHcCCCEEEecCCCCh-HHHHHhhhcCCCCeEEecCchh---HHHHHHhHHhhhcC--ceEEEEcCCcchHH-HH
Q 009060 33 LARRLVEIGAKDVFSVPGDFN-LTLLDHLIAEPELNLVGCCNEL---NAGYAADGYARSRG--VGACVVTFTVGGLS-VL 105 (545)
Q Consensus 33 i~~~L~~~GV~~vFg~pG~~~-~~l~~al~~~~~i~~i~~~hE~---~A~~~A~gyar~tg--~gv~~~t~GpG~~n-~~ 105 (545)
+++.|.+.-=+.+|..-++.. ......+...+ -.++....=. .+.-+|.|.+.+.. +.+|++ |=|... .+
T Consensus 392 v~~~l~~~~~d~i~~~D~G~~~~~~~~~~~~~p-~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i~--GDG~f~m~~ 468 (616)
T PRK07418 392 VLLAVRDLAPDAYYTTDVGQHQMWAAQFLRNGP-RRWISSAGLGTMGFGMPAAMGVKVALPDEEVICIA--GDASFLMNI 468 (616)
T ss_pred HHHHHHhhCCCcEEEECChHHHHHHHHhhhcCC-CeEEcCCCccccccHHHHHHHHHHhCCCCcEEEEE--cchHhhhhH
Confidence 444444432255565554332 23333333222 2344332211 13336777666653 455554 444333 34
Q ss_pred HHHHHhHhcCCcEEEEeCCCCCcccCCCccccc------ccCC---CChHHHHHHhhhceeEEEEeCChhhHHHHHHHHH
Q 009060 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHH------TIGL---PDFTQELRCFQAITCSQAVVNNLGDAHELIDTAI 176 (545)
Q Consensus 106 ~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~------~~~~---~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~ 176 (545)
.-|..|...+.|+++|.-+......-+ ..|+ ..+. ....|...+.+.+--+..++++++++.+.+++|+
T Consensus 469 ~eL~Ta~r~~lpvi~vV~NN~~~g~i~--~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~V~~~~el~~al~~a~ 546 (616)
T PRK07418 469 QELGTLAQYGINVKTVIINNGWQGMVR--QWQESFYGERYSASNMEPGMPDFVKLAEAFGVKGMVISERDQLKDAIAEAL 546 (616)
T ss_pred HHHHHHHHhCCCeEEEEEECCcchHHH--HHHHHhcCCCceeecCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHH
Confidence 678889999999999987655321100 0000 0000 0013567788888778899999988877777766
Q ss_pred HHhhhCCCcEEEEeCCC
Q 009060 177 STALKESKPVYISISCN 193 (545)
Q Consensus 177 ~~a~~~~GPV~l~iP~d 193 (545)
+ ..+|+.|++..|
T Consensus 547 ~----~~~p~lIeV~i~ 559 (616)
T PRK07418 547 A----HDGPVLIDVHVR 559 (616)
T ss_pred h----CCCCEEEEEEec
Confidence 4 478999999987
No 257
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=82.42 E-value=12 Score=38.30 Aligned_cols=121 Identities=16% Similarity=0.036 Sum_probs=73.5
Q ss_pred CeEEecCchhHHHHHHhHHhhhc-CceEEEEcCCcchHH---HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccC
Q 009060 66 LNLVGCCNELNAGYAADGYARSR-GVGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIG 141 (545)
Q Consensus 66 i~~i~~~hE~~A~~~A~gyar~t-g~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~ 141 (545)
...+....=--|+.+|.+.-... +..|+++..|=|++| +.-++-=|-.-+.|+|++.=+..-.. +.. ...+
T Consensus 134 ~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAi-Svp----~~~q 208 (358)
T COG1071 134 GSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAI-SVP----RSRQ 208 (358)
T ss_pred CCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCcee-ecc----hhhc
Confidence 34455555556777777744433 245889999999887 55666668889999999985532221 110 0101
Q ss_pred -CCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeC
Q 009060 142 -LPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (545)
Q Consensus 142 -~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP 191 (545)
..+...+....-.+.-..+.=.++-.+.+.+.+|.+.|+.+.||+.|+.=
T Consensus 209 ~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~ 259 (358)
T COG1071 209 TAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAV 259 (358)
T ss_pred ccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 01112222222233333333336677889999999999999999999854
No 258
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=82.37 E-value=9.3 Score=38.09 Aligned_cols=160 Identities=16% Similarity=0.041 Sum_probs=82.5
Q ss_pred cHHHHHHHHHHHcCCC--EEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC--ceEEEEcCCcchHH
Q 009060 28 TLGRHLARRLVEIGAK--DVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG--VGACVVTFTVGGLS 103 (545)
Q Consensus 28 ~~a~~i~~~L~~~GV~--~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg--~gv~~~t~GpG~~n 103 (545)
..-..|.+.|.+.|++ ...-+.|......+-.... ...+...| .-+.-+|.|.+.+.. +.+|++--|-+..-
T Consensus 27 ~il~~l~~al~~l~~~p~d~vvvsdiGc~~~~~~~~~---~~~~~g~m-G~alpaAiGaklA~Pd~~VV~i~GDG~~f~m 102 (286)
T PRK11867 27 SILAALQRALAELGLDPENVAVVSGIGCSGRLPGYIN---TYGFHTIH-GRALAIATGLKLANPDLTVIVVTGDGDALAI 102 (286)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCCccccccCcccc---ccchhhhh-hcHHHHHHHHHHhCCCCcEEEEeCccHHHhC
Confidence 3667888888888764 2222223222221111111 11122334 445567788776654 45555544434555
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccCCCc---------c-cccccCCCC-hHHHHHHhhhcee-EEE--EeCChhhHH
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNR---------I-LHHTIGLPD-FTQELRCFQAITC-SQA--VVNNLGDAH 169 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~---------~-~~~~~~~~~-~~d~~~~~~~~~k-~~~--~v~~~~~~~ 169 (545)
.++.+..|.+.++|+++|.-+-.....-++. . .....+..+ -.|...+...+-- +.. .+.+++++.
T Consensus 103 g~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~ 182 (286)
T PRK11867 103 GGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLT 182 (286)
T ss_pred CHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHH
Confidence 5788999999999999988654322110000 0 000011000 0244555555432 222 244556555
Q ss_pred HHHHHHHHHhhhCCCcEEEEeCCCCC
Q 009060 170 ELIDTAISTALKESKPVYISISCNLP 195 (545)
Q Consensus 170 ~~l~~A~~~a~~~~GPV~l~iP~dv~ 195 (545)
+.|++ |+..+||++|++..+..
T Consensus 183 ~al~~----Al~~~Gp~lIev~~~C~ 204 (286)
T PRK11867 183 ELIKA----AINHKGFSFVEILQPCP 204 (286)
T ss_pred HHHHH----HHhCCCCEEEEEeCCCC
Confidence 55554 45568999999987753
No 259
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=82.32 E-value=1.1 Score=48.91 Aligned_cols=84 Identities=23% Similarity=0.336 Sum_probs=51.7
Q ss_pred CccccchhHHHHHHhhhhcCCCeEEEEEcch-h----hccc--HHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCC
Q 009060 437 QYGSIGWSVGATLGYAQAAKDKRVIACIGDG-S----FQVT--AQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 509 (545)
Q Consensus 437 ~~g~mG~~l~aAiGaala~p~r~vv~i~GDG-s----f~~~--~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~~~~~~~ 509 (545)
-.|-+||+++-|.||++-+|+.-+.|++||| + ..++ .+-++...+-+-=+-|+++| ||.|++ .-.+.+
T Consensus 151 EGGeLGy~l~ha~gAa~d~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~dGavLPIL~lN--GykI~n---pT~lar 225 (793)
T COG3957 151 EGGELGYALSHAYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVLPILHLN--GYKIEN---PTVLAR 225 (793)
T ss_pred cCcchhHHHHHHHHhhcCCCCcEEEEEecccccccCccccccccccccCccccCceeeEEEec--ceeccC---ceeeee
Confidence 3588999999999999999999999999999 2 2232 22233334444333455554 677711 001233
Q ss_pred CCCCCHHHHHHHcCCC
Q 009060 510 IKNWDYTGLVNAIHNG 525 (545)
Q Consensus 510 l~~~d~~~lA~a~G~~ 525 (545)
+++-++.++=+++|.+
T Consensus 226 ~s~~el~~~f~G~Gy~ 241 (793)
T COG3957 226 ISDEELKALFEGYGYE 241 (793)
T ss_pred cChHHHHHHHhhCCCc
Confidence 3444555555666554
No 260
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=82.06 E-value=16 Score=41.07 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=87.7
Q ss_pred ccHHHHHHHHHHHcCC--CEEEec----CCCChHHHHHhhhc-CCCCeEE-ecCchhHHHHHHhHHhhhcC-ceEEEEcC
Q 009060 27 GTLGRHLARRLVEIGA--KDVFSV----PGDFNLTLLDHLIA-EPELNLV-GCCNELNAGYAADGYARSRG-VGACVVTF 97 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV--~~vFg~----pG~~~~~l~~al~~-~~~i~~i-~~~hE~~A~~~A~gyar~tg-~gv~~~t~ 97 (545)
.+..+++.+.|.+..- +.|+.+ +|+.-+ +.+.+ .| =|++ ...-|++++.+|.|.|. .| ..++.+ .
T Consensus 356 ~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl---~~f~~~fP-~R~fdvGIAEq~~vg~AaGLA~-~G~kPvv~~-f 429 (677)
T PLN02582 356 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL---NLFARRFP-TRCFDVGIAEQHAVTFAAGLAC-EGLKPFCAI-Y 429 (677)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEEeCCCCCccch---HHHHHHcC-ccccccCcCHHHHHHHHHHHHH-CCCeEEEEe-c
Confidence 4677777777777643 345554 333322 23322 22 2444 46799999999999998 57 444443 3
Q ss_pred CcchHHHHHHH-HHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEE-EEeCChhhHHHHHHHH
Q 009060 98 TVGGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTA 175 (545)
Q Consensus 98 GpG~~n~~~~l-~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A 175 (545)
.+=+.-++.-| .++...+.||+++...... .+.+...|+ ....+.+++.+.... ..+.+++++..+++.|
T Consensus 430 s~Fl~RA~DQI~~dval~~lpVv~v~~~aG~--vg~dG~TH~------~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a 501 (677)
T PLN02582 430 SSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHC------GAFDVTYMACLPNMVVMAPSDEAELFHMVATA 501 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEECCCc--ccCCCCccc------ccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 33333445433 4456788999877543222 122112333 233467787775433 4455666666666555
Q ss_pred HHHhhhCCCcEEEEeCCCC
Q 009060 176 ISTALKESKPVYISISCNL 194 (545)
Q Consensus 176 ~~~a~~~~GPV~l~iP~dv 194 (545)
+. ..++||+|..|...
T Consensus 502 l~---~~~gPv~IR~pr~~ 517 (677)
T PLN02582 502 AA---IDDRPSCFRYPRGN 517 (677)
T ss_pred Hh---CCCCCEEEEEecCC
Confidence 43 23699999999764
No 261
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=81.94 E-value=25 Score=38.66 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=69.9
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCC--------CcccccccCCCChH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGT--------NRILHHTIGLPDFT 146 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~--------~~~~~~~~~~~~~~ 146 (545)
+.-+|.|.+.+.. +.+|++--| ++.-..+.|..|...++|+++|.-+......-+ +...+.... ...
T Consensus 417 ~l~aaiGa~la~~~~~vv~~~GDG-~f~~~~~eL~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~~~~~~~~~--~~~ 493 (558)
T TIGR00118 417 GLPAAIGAKVAKPESTVICITGDG-SFQMNLQELSTAVQYDIPVKILILNNRYLGMVRQWQELFYEERYSHTHMG--SLP 493 (558)
T ss_pred hhhHHHhhhhhCCCCcEEEEEcch-HHhccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCceeeccCC--CCC
Confidence 5558888877764 455544333 233345688899999999999998755331100 000000000 113
Q ss_pred HHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 147 QELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 147 d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
|..++.+.+--+..++++++++.+.+++|+ ...||+.|++..|-
T Consensus 494 d~~~~a~a~G~~~~~v~~~~~l~~al~~a~----~~~~p~liev~~~~ 537 (558)
T TIGR00118 494 DFVKLAEAYGIKGIRIEKPEELDEKLKEAL----SSNEPVLLDVVVDK 537 (558)
T ss_pred CHHHHHHHCCCeEEEECCHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 567788888777789999877766666655 44799999999873
No 262
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=81.91 E-value=32 Score=37.76 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=73.1
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCC---cccc-cccC--CCChHHH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN---RILH-HTIG--LPDFTQE 148 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~---~~~~-~~~~--~~~~~d~ 148 (545)
+.-+|.|.+.+.. +.+|++--| |+.-.++.|..|...++|+++|.-+......-+. .... +... ...-.|.
T Consensus 406 glpaAiGa~la~p~~~vv~i~GDG-~f~~~~~eL~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 484 (548)
T PRK08978 406 GLPAAIGAQVARPDDTVICVSGDG-SFMMNVQELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDERYSETDLSDNPDF 484 (548)
T ss_pred hHHHHHHHHHhCCCCcEEEEEccc-hhhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcceecCCCCCCCH
Confidence 3567888777764 555554333 3444468899999999999999877543311100 0000 0000 0011356
Q ss_pred HHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 149 LRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 149 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
..+.+.+--+..++++++++.+.+++|+. ..+|..|++..|-
T Consensus 485 ~~la~a~G~~~~~v~~~~el~~al~~a~~----~~~p~lIeV~id~ 526 (548)
T PRK08978 485 VMLASAFGIPGQTITRKDQVEAALDTLLN----SEGPYLLHVSIDE 526 (548)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 77888887788999999988887777764 4689999999883
No 263
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=81.66 E-value=4.6 Score=44.58 Aligned_cols=109 Identities=20% Similarity=0.156 Sum_probs=71.2
Q ss_pred HHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccc------cCC--CChHHH
Q 009060 79 YAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHT------IGL--PDFTQE 148 (545)
Q Consensus 79 ~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~------~~~--~~~~d~ 148 (545)
-+|.|.+.+.. +.+|++--| ++.=....|..|...++|+++|.-+......-+ ..|+. .+. ....|.
T Consensus 428 paAiGa~la~p~~~vv~i~GDG-~f~m~~~eL~Ta~~~~l~i~ivV~NN~~yg~i~--~~q~~~~~~~~~~~~~~~~~d~ 504 (572)
T PRK06456 428 PAAMGAKLARPDKVVVDLDGDG-SFLMTGTNLATAVDEHIPVISVIFDNRTLGLVR--QVQDLFFGKRIVGVDYGPSPDF 504 (572)
T ss_pred HHHHHHHHhCCCCeEEEEEccc-hHhcchHHHHHHHHhCCCeEEEEEECCchHHHH--HHHHHhhCCCcccccCCCCCCH
Confidence 57788777764 556654433 333345888999999999999988755431100 00000 000 011366
Q ss_pred HHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 149 LRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 149 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
..+.+.+-.+..++++++++.+.+++|+ ..+||..|++..|-
T Consensus 505 ~~~A~a~G~~~~~v~~~~eL~~al~~a~----~~~~p~lIev~v~~ 546 (572)
T PRK06456 505 VKLAEAFGALGFNVTTYEDIEKSLKSAI----KEDIPAVIRVPVDK 546 (572)
T ss_pred HHHHHHCCCeeEEeCCHHHHHHHHHHHH----hCCCCEEEEEEeCc
Confidence 7888888778899999888877776665 35789999999884
No 264
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=81.62 E-value=2.1 Score=42.12 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=42.4
Q ss_pred ccccchhHHHHHHhhhhc-----CCCeEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhh
Q 009060 438 YGSIGWSVGATLGYAQAA-----KDKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTI 498 (545)
Q Consensus 438 ~g~mG~~l~aAiGaala~-----p~r~vv~i~GDGsf~~~--~~eL~ta~~~~lpi~ivV~NN~~~g~ 498 (545)
.+.+-..+|-|+|++-+. .++-+|+..|||+..=. -..|.-|+-...|+++| +-|+||.|
T Consensus 192 ssplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~-CRNNG~AI 258 (432)
T KOG1182|consen 192 SSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFF-CRNNGWAI 258 (432)
T ss_pred cchhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEE-EcCCCeee
Confidence 456677888899887653 24789999999987542 23355567778896665 45556998
No 265
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=81.61 E-value=20 Score=39.92 Aligned_cols=158 Identities=15% Similarity=0.065 Sum_probs=89.3
Q ss_pred HHHHHHHc-CCCEEEecCCCChHH-HHHhhhcCCCCeEEecCc---hhHHHHHHhHHhhhcC--ceEEEEcCCcchHHHH
Q 009060 33 LARRLVEI-GAKDVFSVPGDFNLT-LLDHLIAEPELNLVGCCN---ELNAGYAADGYARSRG--VGACVVTFTVGGLSVL 105 (545)
Q Consensus 33 i~~~L~~~-GV~~vFg~pG~~~~~-l~~al~~~~~i~~i~~~h---E~~A~~~A~gyar~tg--~gv~~~t~GpG~~n~~ 105 (545)
+++.|.+. .=+.++..-++.... ....+.-...-+++.... -..+.-+|.|.+.+.. +.+|++--| |+.=..
T Consensus 403 ~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i~GDG-~f~m~~ 481 (612)
T PRK07789 403 VIERLGEIAGPDAIYVAGVGQHQMWAAQFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDGDG-CFQMTN 481 (612)
T ss_pred HHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchhhhHHhhhccCCCCcEEEEEcch-hhhccH
Confidence 44444443 334555444333322 222332111235554332 2225667888776653 455554333 333345
Q ss_pred HHHHHhHhcCCcEEEEeCCCCCcccCC--------CcccccccCCC--ChHHHHHHhhhceeEEEEeCChhhHHHHHHHH
Q 009060 106 NAIAGAYSENLPVICIVGGPNSNDYGT--------NRILHHTIGLP--DFTQELRCFQAITCSQAVVNNLGDAHELIDTA 175 (545)
Q Consensus 106 ~~l~~A~~~~~Pllvi~g~~~~~~~~~--------~~~~~~~~~~~--~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A 175 (545)
..|..|...++|+++|.-+......-+ +......+... ...|...+.+.+-.+..++++++++.+.+++|
T Consensus 482 ~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a 561 (612)
T PRK07789 482 QELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRCEREEDVDAVIEKA 561 (612)
T ss_pred HHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHH
Confidence 789999999999999987655331100 00000000000 01356788888888889999999888888777
Q ss_pred HHHhhhCCCcEEEEeCCCC
Q 009060 176 ISTALKESKPVYISISCNL 194 (545)
Q Consensus 176 ~~~a~~~~GPV~l~iP~dv 194 (545)
+.. ..||+.|++..|-
T Consensus 562 ~~~---~~~p~lIev~i~~ 577 (612)
T PRK07789 562 RAI---NDRPVVIDFVVGK 577 (612)
T ss_pred Hhc---CCCcEEEEEEECC
Confidence 754 2689999999873
No 266
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=81.60 E-value=25 Score=39.03 Aligned_cols=112 Identities=11% Similarity=0.071 Sum_probs=72.0
Q ss_pred HHHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCC--------CcccccccCCCCh
Q 009060 76 NAGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGT--------NRILHHTIGLPDF 145 (545)
Q Consensus 76 ~A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~--------~~~~~~~~~~~~~ 145 (545)
.+.-+|.|.+.+.. +.+|++--| ++.=...-|..|...++|+++|.-+......-+ ++. ....... .
T Consensus 441 ~glpaaiGa~lA~p~r~Vv~i~GDG-sf~m~~~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~~-~~~~~~~-~ 517 (587)
T PRK06965 441 VGLPYAMGIKMAHPDDDVVCITGEG-SIQMCIQELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKRY-SHSYMDA-L 517 (587)
T ss_pred chHHHHHHHHHhCCCCcEEEEEcch-hhhcCHHHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCCc-cccCCCC-C
Confidence 44557888777753 555554333 233335789999999999999997755321100 000 0001000 1
Q ss_pred HHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 146 TQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 146 ~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
.|...+.+.+-.+..++++++++.+.+++|++. ..+|+.|++..|
T Consensus 518 ~d~~~iA~a~G~~~~~v~~~~eL~~al~~a~~~---~~~p~lieV~i~ 562 (587)
T PRK06965 518 PDFVKLAEAYGHVGMRIEKTSDVEPALREALRL---KDRTVFLDFQTD 562 (587)
T ss_pred CCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhc---CCCcEEEEEEec
Confidence 356778888877889999998887777776652 368999999987
No 267
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=81.45 E-value=31 Score=38.11 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=71.5
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCC-c-c-cc-cccCC--CChHHH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN-R-I-LH-HTIGL--PDFTQE 148 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~-~-~-~~-~~~~~--~~~~d~ 148 (545)
+.-+|.|.+.+.. +.+|++--| |+.=...-|..|...++|+++|.-+......-+. . . .. ..... ....|.
T Consensus 426 glpaaiGa~la~p~~~vv~i~GDG-~f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~ 504 (572)
T PRK08979 426 GLPAAMGVKFAMPDETVVCVTGDG-SIQMNIQELSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGRHSHSYMDSVPDF 504 (572)
T ss_pred hhhHHHhhhhhCCCCeEEEEEcch-HhhccHHHHHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCcccccCCCCCCCH
Confidence 4457778666653 455554333 2222347899999999999999987553211000 0 0 00 00000 001356
Q ss_pred HHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 149 LRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 149 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
.++.+.+-.+..++++++++...+++|+.. ..+|+.|++..|-
T Consensus 505 ~~~A~a~G~~~~~v~~~~eL~~al~~a~~~---~~~p~lIev~i~~ 547 (572)
T PRK08979 505 AKIAEAYGHVGIRISDPDELESGLEKALAM---KDRLVFVDINVDE 547 (572)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 788888877899999999988877777642 3789999999873
No 268
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=81.26 E-value=12 Score=37.29 Aligned_cols=154 Identities=16% Similarity=-0.006 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcCCC--EEEecCCCChHHHHHhhhcCCC---CeEEecCchhHHHHHHhHHhhhcC--ceEEEEcCCcch
Q 009060 29 LGRHLARRLVEIGAK--DVFSVPGDFNLTLLDHLIAEPE---LNLVGCCNELNAGYAADGYARSRG--VGACVVTFTVGG 101 (545)
Q Consensus 29 ~a~~i~~~L~~~GV~--~vFg~pG~~~~~l~~al~~~~~---i~~i~~~hE~~A~~~A~gyar~tg--~gv~~~t~GpG~ 101 (545)
.-.+|.+.|.+.|+. ...-+.|..... +.+. .....+.| ..+.-+|.|...+.. +.+|++--|-..
T Consensus 12 i~~~~~~a~~~l~~~p~d~iivsdiGc~~------~~~~~l~~~~~~t~m-G~alPaAiGaklA~Pd~~VVai~GDG~f~ 84 (287)
T TIGR02177 12 ILSALQRALAELNLDPEQVVVVSGIGCSA------KTPHYVNVNGFHGLH-GRALPVATGIKLANPHLKVIVVGGDGDLY 84 (287)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCccc------ccCCeEecCCccccc-ccHHHHHHHHHHHCCCCcEEEEeCchHHH
Confidence 446778888888873 222222222111 1111 11122334 456678888666653 455554333322
Q ss_pred HHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcc---------cc-cccCC----CChHHHHHHhhhceeEEEE-eCChh
Q 009060 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRI---------LH-HTIGL----PDFTQELRCFQAITCSQAV-VNNLG 166 (545)
Q Consensus 102 ~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~---------~~-~~~~~----~~~~d~~~~~~~~~k~~~~-v~~~~ 166 (545)
.-.++.+..|.+.++|+++|.-+......-++.. .. ...+. .+ .+.+.+...+...+.. ..+++
T Consensus 85 ~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~n-p~~~a~A~g~g~va~~~~~~~~ 163 (287)
T TIGR02177 85 GIGGNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVN-PLLLAIALGYTFVARGFSGDVA 163 (287)
T ss_pred hccHHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCC-HHHHHHhCCCCeEEEEecCCHH
Confidence 2346779999999999999986533221100000 00 00000 01 2456667666543333 46666
Q ss_pred hHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 167 DAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 167 ~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
++.+.+++ |+..+||++|++....
T Consensus 164 eL~~ai~~----Al~~~GpslIeV~~pC 187 (287)
T TIGR02177 164 HLKEIIKE----AINHKGYALVDILQPC 187 (287)
T ss_pred HHHHHHHH----HHhCCCCEEEEEeCCC
Confidence 66555544 5567899999987553
No 269
>PRK07524 hypothetical protein; Provisional
Probab=80.95 E-value=26 Score=38.37 Aligned_cols=113 Identities=19% Similarity=0.177 Sum_probs=70.1
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccc----cccC-CCChHHHH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILH----HTIG-LPDFTQEL 149 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~----~~~~-~~~~~d~~ 149 (545)
+.-+|.|.+.+.. +.+|++--|.-..+ +.-|..|...++|++++.-+......-+. ..+ ...+ +..-.|..
T Consensus 412 ~lp~aiGa~lA~p~~~vv~i~GDG~f~~~-~~el~ta~~~~lpi~~vV~NN~~~g~i~~-~~~~~~~~~~~~~~~~~d~~ 489 (535)
T PRK07524 412 GLPAAIGAALGAPERPVVCLVGDGGLQFT-LPELASAVEADLPLIVLLWNNDGYGEIRR-YMVARDIEPVGVDPYTPDFI 489 (535)
T ss_pred hHHHHHHHHHhCCCCcEEEEEcchHHhhh-HHHHHHHHHhCCCeEEEEEECCchHHHHH-HHHHhcCCccccCCCCCCHH
Confidence 4457788777763 56666544433333 46688899999999988876543310000 000 0000 00113567
Q ss_pred HHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCCC
Q 009060 150 RCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195 (545)
Q Consensus 150 ~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv~ 195 (545)
++.+.+--+..++++++++.+.+++|+ ..+||+.|++..|-.
T Consensus 490 ~~A~a~G~~~~~v~~~~el~~al~~a~----~~~~p~liev~~~~~ 531 (535)
T PRK07524 490 ALARAFGCAAERVADLEQLQAALRAAF----ARPGPTLIEVDQACW 531 (535)
T ss_pred HHHHHCCCcEEEeCCHHHHHHHHHHHH----hCCCCEEEEEECCcc
Confidence 788888667889988877766666554 468999999988754
No 270
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=80.78 E-value=3.1 Score=40.37 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=43.4
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCcccccccC--CCCCcEEEEcCCcceecCC-CccccccHHHHHHHHHHHh
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSALAKKL 362 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~-~~~~~~d~~~~l~~L~~~l 362 (545)
...+++.++|++|++|+++.-.....+... ..+.+++.|+.++...... ...-..++..+|..|.+.+
T Consensus 165 ~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~~~~~~i~g~~~~~l~~l~~~~ 235 (242)
T PTZ00408 165 EIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYSQFDESIYGKASVIVPAWVDRV 235 (242)
T ss_pred HHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCccCCEEEECCHHHHHHHHHHHH
Confidence 445668899999999999865544333221 2466899999988654311 1111236778888876654
No 271
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=80.73 E-value=37 Score=37.51 Aligned_cols=112 Identities=16% Similarity=0.054 Sum_probs=70.4
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCC-------CcccccccCCCChHH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGT-------NRILHHTIGLPDFTQ 147 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~-------~~~~~~~~~~~~~~d 147 (545)
+.-+|.|.+.+.. +.+|++--|. +.-....|..|...++|+++|.-+......-+ +.......... ..|
T Consensus 429 glpaAiGaala~p~~~vv~i~GDGs-f~m~~~eL~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~~~~~~~~-~~d 506 (571)
T PRK07710 429 GLPAAIGAQLAKPDETVVAIVGDGG-FQMTLQELSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRYSHSLLSC-QPD 506 (571)
T ss_pred hHHHHHHHHHhCCCCcEEEEEcchH-HhhhHHHHHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcceeccCCC-CCC
Confidence 5567888877763 5666554332 33334678889999999999887655321100 00000000001 135
Q ss_pred HHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 148 ~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
...+.+.+--...++++++++...+++|+ ...||+.|++..|-
T Consensus 507 ~~~~A~a~G~~~~~v~~~~el~~al~~a~----~~~~p~lieV~vd~ 549 (571)
T PRK07710 507 FVKLAEAYGIKGVRIDDELEAKEQLQHAI----ELQEPVVIDCRVLQ 549 (571)
T ss_pred HHHHHHHCCCeEEEECCHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 56788888777899999887766666555 45789999999883
No 272
>PRK07064 hypothetical protein; Provisional
Probab=80.63 E-value=8.4 Score=42.22 Aligned_cols=110 Identities=15% Similarity=0.033 Sum_probs=66.8
Q ss_pred HHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCC-c----ccccccCCCChHHHHHH
Q 009060 79 YAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN-R----ILHHTIGLPDFTQELRC 151 (545)
Q Consensus 79 ~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~-~----~~~~~~~~~~~~d~~~~ 151 (545)
-+|.|.+.+.. +.+|++--| ++.-.++.|..|...++|+++|.-+......-+. . ..+....+....|...+
T Consensus 412 paAiGa~lA~p~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~~~~~~~~~~~~d~~~l 490 (544)
T PRK07064 412 AMAIGAALAGPGRKTVGLVGDG-GLMLNLGELATAVQENANMVIVLMNDGGYGVIRNIQDAQYGGRRYYVELHTPDFALL 490 (544)
T ss_pred chhhhhhhhCcCCcEEEEEcch-HhhhhHHHHHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcCCccccccCCCCCHHHH
Confidence 35666555543 455554333 4444457888999999999988775443210000 0 00000000111356778
Q ss_pred hhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 152 FQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 152 ~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
.+.+--...++++++++.+.+++|++ ..||+.|++..+
T Consensus 491 A~a~G~~~~~v~~~~eL~~al~~a~~----~~~p~lIeV~~~ 528 (544)
T PRK07064 491 AASLGLPHWRVTSADDFEAVLREALA----KEGPVLVEVDML 528 (544)
T ss_pred HHHCCCeEEEeCCHHHHHHHHHHHHc----CCCCEEEEEEcc
Confidence 88887677899999888777777663 578999999986
No 273
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=80.50 E-value=20 Score=39.61 Aligned_cols=122 Identities=12% Similarity=0.059 Sum_probs=74.6
Q ss_pred CeEEecCchhH---HHHHHhHHhhhcC-ceEEEEcCCcchHH-HHHHHHHhHhcCCcEEEEeCCCCCcccC------CCc
Q 009060 66 LNLVGCCNELN---AGYAADGYARSRG-VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYG------TNR 134 (545)
Q Consensus 66 i~~i~~~hE~~---A~~~A~gyar~tg-~gv~~~t~GpG~~n-~~~~l~~A~~~~~Pllvi~g~~~~~~~~------~~~ 134 (545)
.+++..+.-.+ +.-+|.|.+.+.+ +.+|++ |=|... .++.+..|...++|+++|.-+....... +..
T Consensus 416 ~~~~~~~g~~~~G~~lpaaiGaala~~~~vv~i~--GDGsf~~~~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~ 493 (568)
T PRK07449 416 YPVYSNRGASGIDGLLSTAAGVARASAKPTVALI--GDLSFLHDLNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEE 493 (568)
T ss_pred ceEEecCCccchhhHHHHHHHHHhcCCCCEEEEe--chHHhhcCcHHHHhhcccCCCeEEEEEECCCCccccCCCCCCCc
Confidence 55555443222 4567888877744 656554 444443 3578888999999999998775542100 000
Q ss_pred -ccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 135 -ILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 135 -~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
......+...-.|..++.+.+-....++++++++...+++|+ ..+||+.|++..|
T Consensus 494 ~~~~~~~~~~~~~df~~lA~a~G~~~~~V~~~~eL~~al~~a~----~~~~p~lIev~id 549 (568)
T PRK07449 494 PVFERFFGTPHGVDFAHAAAMYGLEYHRPETWAELEEALADAL----PTPGLTVIEVKTN 549 (568)
T ss_pred chhhHhhcCCCCCCHHHHHHHcCCCccCCCCHHHHHHHHHHHh----cCCCCEEEEEeCC
Confidence 000011111113556777777667788988888776666664 4579999999877
No 274
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=80.11 E-value=2.1 Score=41.33 Aligned_cols=64 Identities=13% Similarity=-0.018 Sum_probs=38.4
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCccccccc-CCCCCcEEEEcCCcceec--C-CCccccccHHHHHHHH
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL-LIKKEKAIIVQPHRVTVG--N-GPSLGWVFMADFLSAL 358 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~--~-~~~~~~~d~~~~l~~L 358 (545)
.+.+.+++||++|+||+++.-.....+.. ..++.++|.|+.++.... . ...+-..++.++|..|
T Consensus 168 ~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 168 HMEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred HHHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 34456789999999999986554332221 123567888998876442 0 1122233667776653
No 275
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=80.08 E-value=41 Score=37.10 Aligned_cols=122 Identities=16% Similarity=0.087 Sum_probs=75.3
Q ss_pred CeEEecCc---hhHHHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCC--------
Q 009060 66 LNLVGCCN---ELNAGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGT-------- 132 (545)
Q Consensus 66 i~~i~~~h---E~~A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~-------- 132 (545)
-+++.... =..+.-+|.|.+.+.. +.+|++--|.=.. .++.|..|...+.|+++|.-+......-+
T Consensus 410 ~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~~-~~~eL~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~ 488 (564)
T PRK08155 410 RQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGSLMM-NIQEMATAAENQLDVKIILMNNEALGLVHQQQSLFYG 488 (564)
T ss_pred CeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEEccchhhc-cHHHHHHHHHhCCCeEEEEEeCCcccccHHHHHHhcC
Confidence 35554432 1235558888777653 5666654443333 35788889999999999887655321100
Q ss_pred CcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 133 NRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 133 ~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
.+...... ....|..++.+.+--+..++++++++...+++|+ ..++|+.|++..|-
T Consensus 489 ~~~~~~~~--~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~----~~~~p~lIeV~~~~ 544 (564)
T PRK08155 489 QRVFAATY--PGKINFMQIAAGFGLETCDLNNEADPQAALQEAI----NRPGPALIHVRIDA 544 (564)
T ss_pred CCeeeccC--CCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 00000000 0113567788888777889999888876666665 35799999999873
No 276
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=79.94 E-value=15 Score=40.60 Aligned_cols=138 Identities=14% Similarity=0.089 Sum_probs=80.0
Q ss_pred CCChHHHHHhhhc-CCCCeEEecCch---hHHHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeC
Q 009060 50 GDFNLTLLDHLIA-EPELNLVGCCNE---LNAGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVG 123 (545)
Q Consensus 50 G~~~~~l~~al~~-~~~i~~i~~~hE---~~A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g 123 (545)
|.........+.. .++.+++....= ..+.-+|.|.+.+.. +.+|++--| ++.-.+..+..|...++|+++|.-
T Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~~~~vv~ 489 (578)
T PRK06112 411 SYSSIWVANFLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVARPGAPVICLVGDG-GFAHVWAELETARRMGVPVTIVVL 489 (578)
T ss_pred cHHHHHHHHhcCccCCCceEECCCCccccccHHHHHHHHHhhCCCCcEEEEEcch-HHHhHHHHHHHHHHhCCCeEEEEE
Confidence 4343444444432 223456554432 345668888776654 556665444 333346788889999999999987
Q ss_pred CCCCcccCC---Cccc---ccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 124 GPNSNDYGT---NRIL---HHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 124 ~~~~~~~~~---~~~~---~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
+.......+ .... +.... ....|...+.+.+--...++++++++.+.+++|+ ..+||+.|++..|
T Consensus 490 NN~~~g~~~~~~~~~~~~~~~~~~-~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~----~~~gp~lIev~~~ 560 (578)
T PRK06112 490 NNGILGFQKHAETVKFGTHTDACH-FAAVDHAAIARACGCDGVRVEDPAELAQALAAAM----AAPGPTLIEVITD 560 (578)
T ss_pred eCCccCCEEeccccccCCccccCc-CCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEcC
Confidence 764311000 0000 00000 0013456777877666788998887766666554 4589999999877
No 277
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=79.63 E-value=5.8 Score=41.28 Aligned_cols=112 Identities=17% Similarity=0.141 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHhcC--CCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHH
Q 009060 221 LEAAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGE 298 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~--rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~ 298 (545)
.+++++.+++.|++.+ +..++.|.... .+....+.+|++.+|.+-+............... .|. +..+. . ..
T Consensus 71 WdeAl~~ia~~l~~~~~~~i~~~~~~~~~-~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~--~~~~~-~-~~ 144 (386)
T cd02768 71 WEEALKTVAEGLKAVKGDKIGGIAGPRAD-LESLFLLKKLLNKLGSNNIDHRLRQSDLPADNRL-RGN--YLFNT-S-IA 144 (386)
T ss_pred HHHHHHHHHHHHHhcChhheEEEecCCCC-HHHHHHHHHHHHHhCCCCchhhhccccCcccccc-ccC--cccCC-C-HH
Confidence 5778899999999876 55666555332 2344678899999998765431111000000000 011 11111 1 22
Q ss_pred HhhcCCEEEEeCCCCCCCcccccc---cC-C-CCCcEEEEcCCcc
Q 009060 299 IVESADAYVFVGPIFNDYSSVGYS---LL-I-KKEKAIIVQPHRV 338 (545)
Q Consensus 299 ~l~~aD~vl~lG~~~~~~~~~~~~---~~-~-~~~~~i~id~d~~ 338 (545)
-+.++|+||++|+.+.+.....+. .. . ++.++|.||+...
T Consensus 145 di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t 189 (386)
T cd02768 145 EIEEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDT 189 (386)
T ss_pred HHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcc
Confidence 357999999999886433221111 11 1 2678999998664
No 278
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=79.24 E-value=4.1 Score=43.70 Aligned_cols=116 Identities=16% Similarity=0.040 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHhc------CCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCH
Q 009060 221 LEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSS 294 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a------~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~ 294 (545)
-+++++.+++.|++. +....+.|.+...........+|+..+|.|-+......+..+...+..+|.. ..+
T Consensus 87 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~~~~~~~~~~~~G~~--~~~-- 162 (461)
T cd02750 87 WDEALELIADAIIDTIKKYGPDRVIGFSPIPAMSMVSYAAGSRFASLIGGVSLSFYDWYGDLPPGSPQTWGEQ--TDV-- 162 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEeeccCCcccchhhHHHHHHHHhcCCccCCCCCcccchhhhhhhhcCCC--CCC--
Confidence 467788888777632 2223333433222223445678999999876643322222222233333321 111
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCcccccccC----CCCCcEEEEcCCccee
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL----IKKEKAIIVQPHRVTV 340 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~----~~~~~~i~id~d~~~~ 340 (545)
....-+.+||+||++|+...+.....+..+ -++.|+|.||+.....
T Consensus 163 ~~~~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~t 212 (461)
T cd02750 163 PESADWYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPS 212 (461)
T ss_pred CChhHHhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcc
Confidence 112335899999999988533221111111 1456899999877654
No 279
>PF00766 ETF_alpha: Electron transfer flavoprotein FAD-binding domain; InterPro: IPR014731 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the C-terminal domain of the alpha subunit of both Group I and Group II ETFs.; PDB: 1O96_D 3CLR_D 1O97_D 3CLT_D 3CLU_D 3CLS_D 2A1U_A 2A1T_R 1EFV_A 1EFP_C ....
Probab=78.93 E-value=2.2 Score=33.93 Aligned_cols=63 Identities=22% Similarity=0.360 Sum_probs=40.0
Q ss_pred CEEEcCccccccchHHHHHHHHHHhCCceEeCCC--CccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCC
Q 009060 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPI 312 (545)
Q Consensus 238 pvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~--~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~ 312 (545)
.++-+|.|....+..+.+++||+.+|+-|-.|-. -.|.+|.+ ..+|. .|. .-.+++.|.+|.+
T Consensus 9 ~VV~~GrG~~~~e~~~l~~~LA~~lga~vg~SRp~vd~gw~p~~--~qIG~----sG~------~v~P~lyia~GIS 73 (86)
T PF00766_consen 9 VVVAGGRGVGSKENFELIEELAEALGAAVGASRPVVDAGWIPRE--RQIGQ----SGK------TVAPKLYIAFGIS 73 (86)
T ss_dssp EEEEE-GGG-STGGCHHHHHHHHHHT-EEEE-HHHHHTTSS-GG--GBBST----TSB--------T-SEEEEES--
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhCCchhccHHHHhCCCCchh--hhcCC----CCc------EEeeeeeEeecch
Confidence 4666788888778889999999999999988854 46777765 34444 222 1368999999965
No 280
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=78.82 E-value=11 Score=41.55 Aligned_cols=112 Identities=13% Similarity=-0.010 Sum_probs=68.0
Q ss_pred HHHHHhHHhhhcC-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccc--cc--cCCCChHHHHHH
Q 009060 77 AGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILH--HT--IGLPDFTQELRC 151 (545)
Q Consensus 77 A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~--~~--~~~~~~~d~~~~ 151 (545)
+.-+|.|.+.+.+ +.++++--|. +.=...-|..|...++|+++|.-+-.....+.....+ +. .......|...+
T Consensus 422 ~lpaaiGaala~~~~vv~i~GDGs-f~m~~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~l 500 (554)
T TIGR03254 422 GMGYAIAAAVETGKPVVALEGDSA-FGFSGMEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKM 500 (554)
T ss_pred hHHHHHHHHhcCCCcEEEEEcCch-hcccHHHHHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHH
Confidence 3446667666655 5556543332 2222367888999999998888765432111000000 00 000001356778
Q ss_pred hhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 152 FQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 152 ~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
.+.+-....++++++++...+++|+ ...||+.|++..|
T Consensus 501 a~a~G~~~~~v~~~~el~~al~~a~----~~~~p~lIev~id 538 (554)
T TIGR03254 501 MKAFGGVGYNVTTPDELKAALNEAL----ASGKPTLINAVID 538 (554)
T ss_pred HHHCCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEEC
Confidence 8888777899999988877777665 3578999999877
No 281
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=78.29 E-value=7.2 Score=34.67 Aligned_cols=84 Identities=14% Similarity=0.164 Sum_probs=54.4
Q ss_pred hHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCCHHHHHHHcC
Q 009060 444 SVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIH 523 (545)
Q Consensus 444 ~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~~~~~~~l~~~d~~~lA~a~G 523 (545)
+..+|.|.+.+.....++..+..-++.-.++.|..+...++|+++|+.+-....... ..+...|...+.+.+-
T Consensus 46 A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~~~~~~~~~~-------~~~q~~d~~~~~~~~~ 118 (155)
T cd07035 46 AVGMADGYARATGKPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPTAGEGR-------GAFQEIDQVALFRPIT 118 (155)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeCCCccccccC-------CcccccCHHHHHHHHh
Confidence 557778877775333345555588888899999999999999999887766554311 0122356666666663
Q ss_pred CCCCceeEEEEeecee
Q 009060 524 NGEGKCWTAKVSIYKM 539 (545)
Q Consensus 524 ~~~~~~~~~~v~~~~~ 539 (545)
+ +.+++++.++
T Consensus 119 -~----~~~~i~~~~~ 129 (155)
T cd07035 119 -K----WAYRVTSPEE 129 (155)
T ss_pred -c----eEEEcCCHHH
Confidence 2 3555655544
No 282
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=77.78 E-value=8 Score=42.57 Aligned_cols=110 Identities=17% Similarity=-0.023 Sum_probs=67.0
Q ss_pred HHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCccccc-----ccC-CCChHHHH
Q 009060 78 GYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHH-----TIG-LPDFTQEL 149 (545)
Q Consensus 78 ~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~-----~~~-~~~~~d~~ 149 (545)
.-+|.|.+.+.. +.+|++--| ++.-..+.|..|...++|+++|.-+......-+. ..+. ..+ .....|..
T Consensus 421 lpaaiGa~la~p~~~vv~i~GDG-sf~~~~~el~ta~~~~l~i~~vv~nN~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~ 498 (557)
T PRK08199 421 LPAAIAAKLLFPERTVVAFAGDG-CFLMNGQELATAVQYGLPIIVIVVNNGMYGTIRM-HQEREYPGRVSGTDLTNPDFA 498 (557)
T ss_pred HHHHHHHHHhCCCCcEEEEEcch-HhhccHHHHHHHHHhCCCeEEEEEeCCcchHHHH-HHHHhcCCccccccCCCCCHH
Confidence 335677666553 555554333 2333457888899999999999877553210000 0000 000 00113556
Q ss_pred HHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 150 RCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 150 ~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
++.+.+--...++++++++.+.+++|+ ..+||+.|++..|
T Consensus 499 ~~a~a~G~~~~~v~~~~el~~al~~a~----~~~gp~li~v~~~ 538 (557)
T PRK08199 499 ALARAYGGHGETVERTEDFAPAFERAL----ASGKPALIEIRID 538 (557)
T ss_pred HHHHHCCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEeC
Confidence 788888777889999887776666665 4589999999987
No 283
>PRK08266 hypothetical protein; Provisional
Probab=77.53 E-value=13 Score=40.82 Aligned_cols=111 Identities=13% Similarity=0.091 Sum_probs=70.0
Q ss_pred HHHhHHhhhc-C-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCC-c-c-c-ccccCC-CChHHHHHH
Q 009060 79 YAADGYARSR-G-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN-R-I-L-HHTIGL-PDFTQELRC 151 (545)
Q Consensus 79 ~~A~gyar~t-g-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~-~-~-~-~~~~~~-~~~~d~~~~ 151 (545)
-+|.|.+... + +.+|++--| ++.-....|..|...++|+++|.-+......-+. . . . .+..+. ....|...+
T Consensus 409 p~aiGa~la~p~~~vv~v~GDG-~f~~~~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~l 487 (542)
T PRK08266 409 PTALGAKVANPDRPVVSITGDG-GFMFGVQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRVVASDLVNPDFVKL 487 (542)
T ss_pred HHHHHHHHhCCCCcEEEEEcch-hhhccHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCCCCCCHHHH
Confidence 4677876665 3 566665555 4444468899999999999998876543210000 0 0 0 000010 011356788
Q ss_pred hhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 152 FQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 152 ~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
.+.+-....++++++++.+.+++|+ ..+||+.|++..|-
T Consensus 488 a~a~G~~~~~v~~~~el~~al~~a~----~~~~p~liev~i~~ 526 (542)
T PRK08266 488 AESFGVAAFRVDSPEELRAALEAAL----AHGGPVLIEVPVPR 526 (542)
T ss_pred HHHcCCeEEEeCCHHHHHHHHHHHH----hCCCcEEEEEEecC
Confidence 8888878899999887766666654 45789999999873
No 284
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=77.50 E-value=2.4 Score=47.40 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHhcC---------------CC--EEEcCccccccchHHHHHHHHHHhCCceEeCCCCc-cCCCC--CC
Q 009060 221 LEAAVEATADFLNKAV---------------KP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGK-GLVPE--HH 280 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~---------------rp--vi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~k-g~~~~--~h 280 (545)
-+++++.+++.|++.+ +| +.+.|++...-+..-.+.+|++.+|.+.+... ++ ..-+. ..
T Consensus 73 WdeAld~iA~klk~i~~~~~~~~~~~g~~~~g~~si~~~gs~~~~nE~~~~~~kl~r~lGt~~id~~-ar~C~~~tv~~l 151 (649)
T cd02752 73 WDEALDEIARKMKDIRDASFVEKNAAGVVVNRPDSIAFLGSAKLSNEECYLIRKFARALGTNNLDHQ-ARIUHSPTVAGL 151 (649)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccCCCceEEEEccCCCCchHHHHHHHHHHHhCCCcccCC-cchhhhHHHHHH
Confidence 4678888888887643 34 44455443333445678899999998766432 11 00000 00
Q ss_pred CCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcc--ccccc--CCC-CCcEEEEcCCccee
Q 009060 281 PHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSS--VGYSL--LIK-KEKAIIVQPHRVTV 340 (545)
Q Consensus 281 pl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~--~~~~~--~~~-~~~~i~id~d~~~~ 340 (545)
...+|. |.+.+ ...+ ++++|+||++|+...+... +.+-. .-+ +.|+|.||+.....
T Consensus 152 ~~~~G~--ga~tn-s~~D-i~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~T 212 (649)
T cd02752 152 ANTFGR--GAMTN-SWND-IKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRT 212 (649)
T ss_pred HhhcCC--CCCCC-CHHH-HhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCch
Confidence 111221 11221 1222 5889999999988643322 22211 112 57999999876543
No 285
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=76.96 E-value=15 Score=40.34 Aligned_cols=108 Identities=9% Similarity=-0.002 Sum_probs=64.4
Q ss_pred HHhHHhhhcC--ceEEEEcCCcc-hHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCC-cccccccCCCChHHHHHHhhhc
Q 009060 80 AADGYARSRG--VGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN-RILHHTIGLPDFTQELRCFQAI 155 (545)
Q Consensus 80 ~A~gyar~tg--~gv~~~t~GpG-~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~ 155 (545)
+|.|.+.+.. +.+|++ |=| +.=.+.-|..|...++|+++|.-+......-+. ....+........|...+.+.+
T Consensus 412 aaiGa~la~p~~~vv~i~--GDG~f~m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~la~a~ 489 (539)
T TIGR03393 412 AAFGAQTACPNRRVILLI--GDGSAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHLPQAL 489 (539)
T ss_pred HHHHHHhcCCCCCeEEEE--cCcHHHhHHHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHHHHHHc
Confidence 5667555543 455554 444 333457888899999999999876554311000 0000000000112455666766
Q ss_pred ee----EEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 156 TC----SQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 156 ~k----~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
-. +..++++++++.+.+++|+ ..+||+.|++..|
T Consensus 490 G~~~~~~~~~v~~~~el~~al~~a~----~~~~p~liev~i~ 527 (539)
T TIGR03393 490 SLDPQSECWRVSEAEQLADVLEKVA----AHERLSLIEVVLP 527 (539)
T ss_pred CCCCccceEEeccHHHHHHHHHHHh----ccCCeEEEEEEcC
Confidence 43 4789999888877777665 4579999999987
No 286
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=76.55 E-value=4.6 Score=40.26 Aligned_cols=69 Identities=19% Similarity=0.135 Sum_probs=45.3
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCcccccccC--CCCCcEEEEcCCcceecCCC-ccccccHHHHHHHHHHHhc
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGNGP-SLGWVFMADFLSALAKKLR 363 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~-~~~~~d~~~~l~~L~~~l~ 363 (545)
.+.+.+.++|++|++|+++.-.....+-.. ..+.++|.||.++....... ..-..++.++|..|.+.+.
T Consensus 207 ~a~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~~~~~~i~g~~~evL~~l~~~l~ 278 (285)
T PRK05333 207 AARAALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADPLLTLKVEASCAQALAALVARLG 278 (285)
T ss_pred HHHHHHhcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCcceeEEEeCCHHHHHHHHHHHhC
Confidence 345667899999999999865544322211 13458999999887654111 1223478999999977764
No 287
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=76.48 E-value=16 Score=39.84 Aligned_cols=109 Identities=14% Similarity=0.131 Sum_probs=67.2
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCccc--------CCCcccccccCCCChH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDY--------GTNRILHHTIGLPDFT 146 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~--------~~~~~~~~~~~~~~~~ 146 (545)
+.-+|.|.+.+.. +.+|++--|. +.-.+..+..|...++|++++.-+...... +.+... ... ..-.
T Consensus 412 ~lp~aiGa~la~p~~~vv~i~GDG~-f~~~~~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~~--~~~-~~~~ 487 (530)
T PRK07092 412 GLPAAVGVALAQPGRRVIGLIGDGS-AMYSIQALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRDVP--GLD-LPGL 487 (530)
T ss_pred hHHHHHHHHHhCCCCeEEEEEeCch-HhhhHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCCCC--CCC-CCCC
Confidence 4447788776653 5666554443 333468888999999999888866543211 000000 000 0113
Q ss_pred HHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 147 QELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 147 d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
|...+.+.+-....++.+++++.+.+++|+ ...||+.|++..|
T Consensus 488 d~~~~a~~~G~~~~~v~~~~~l~~al~~a~----~~~~p~liev~~d 530 (530)
T PRK07092 488 DFVALARGYGCEAVRVSDAAELADALARAL----AADGPVLVEVEVA 530 (530)
T ss_pred CHHHHHHHCCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEcC
Confidence 556788888777788888777766555554 4579999998765
No 288
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=76.48 E-value=1e+02 Score=34.18 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=69.3
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCC-C-ccc--ccccCC--CChHHH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGT-N-RIL--HHTIGL--PDFTQE 148 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~-~-~~~--~~~~~~--~~~~d~ 148 (545)
+.-+|.|.+.+.. +.+|++--| ++.-..+.|..|...++|+++|.-+......-+ . ... ...... ....|.
T Consensus 424 ~lpaaiGa~la~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~d~ 502 (586)
T PRK06276 424 GFPAAIGAKVAKPDANVIAITGDG-GFLMNSQELATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKRQSEVHLGETPDF 502 (586)
T ss_pred chhHHHhhhhhcCCCcEEEEEcch-HhhccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCCcccccCCCCCCH
Confidence 4557888777663 555554333 333335789999999999999988765421100 0 000 000000 011356
Q ss_pred HHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 149 LRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 149 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
.++.+.+--+..++++++++...+++|+ ...||..|++..|
T Consensus 503 ~~la~a~G~~~~~v~~~~el~~al~~a~----~~~~p~lIeV~i~ 543 (586)
T PRK06276 503 VKLAESYGVKADRVEKPDEIKEALKEAI----KSGEPYLLDIIID 543 (586)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHH----hCCCCEEEEEEec
Confidence 7788888777889999888776666665 4578999999876
No 289
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=75.82 E-value=4.2 Score=38.91 Aligned_cols=63 Identities=17% Similarity=0.161 Sum_probs=40.5
Q ss_pred HHHHhhcCCEEEEeCCCCCCCccccccc--CCCCCcEEEEcCCcceecCC-CccccccHHHHHHHH
Q 009060 296 CGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSAL 358 (545)
Q Consensus 296 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~-~~~~~~d~~~~l~~L 358 (545)
+.+.+.++|++|++|+++.-.....+.. ..++.++|.|+.++..+... ...-..|+.++|..|
T Consensus 158 ~~~~~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~g~~~~~l~~l 223 (224)
T cd01412 158 AVEALAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEPTPLSPIADFAFRGKAGEVLPAL 223 (224)
T ss_pred HHHHHHcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCCCCCCCCcCCEEEECCHHHHHHHh
Confidence 4456789999999998875443322222 12567899999998766311 122234777887765
No 290
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=75.79 E-value=93 Score=32.10 Aligned_cols=153 Identities=15% Similarity=0.109 Sum_probs=82.0
Q ss_pred CCccHHHHHHHHHHHcCC--CEEEecCCCC-----hHHHHHhhhcCC-CCeEEe-cCchhHHHHHHhHHhhhcCceEEEE
Q 009060 25 SVGTLGRHLARRLVEIGA--KDVFSVPGDF-----NLTLLDHLIAEP-ELNLVG-CCNELNAGYAADGYARSRGVGACVV 95 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV--~~vFg~pG~~-----~~~l~~al~~~~-~i~~i~-~~hE~~A~~~A~gyar~tg~gv~~~ 95 (545)
.+++..+++.+.|.+..- +.++.+..+- .+...+.+.+.- .-|++. .-.|++++.+|.|.|..-...++..
T Consensus 25 ~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~~ 104 (356)
T PLN02683 25 KEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEF 104 (356)
T ss_pred cccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEE
Confidence 446677777777766643 3555554432 122222232211 246664 6699999999999998633444332
Q ss_pred cCCcchHHHHHHHHH-hHhcC--------CcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEE-EEeCCh
Q 009060 96 TFTVGGLSVLNAIAG-AYSEN--------LPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNL 165 (545)
Q Consensus 96 t~GpG~~n~~~~l~~-A~~~~--------~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~ 165 (545)
...-=+..++.-|.+ +...+ .||+++..+ ... .+.+ ..|+ + .+ ..+++.+-... ..+.++
T Consensus 105 ~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~-~g~G-~tH~-----~-~~-~a~lr~iPnl~V~~Pad~ 174 (356)
T PLN02683 105 MTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAA-AGVG-AQHS-----Q-CF-AAWYSSVPGLKVLAPYSS 174 (356)
T ss_pred ehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCC-CCCC-Cccc-----c-CH-HHHHhcCCCCEEEEeCCH
Confidence 221112334444322 22222 899988644 221 2222 1221 1 23 58888874432 445566
Q ss_pred hhHHHHHHHHHHHhhhCCCcEEEEeC
Q 009060 166 GDAHELIDTAISTALKESKPVYISIS 191 (545)
Q Consensus 166 ~~~~~~l~~A~~~a~~~~GPV~l~iP 191 (545)
+++..+++.|+ ..+|||+|..+
T Consensus 175 ~e~~~~l~~a~----~~~gPv~ir~~ 196 (356)
T PLN02683 175 EDARGLLKAAI----RDPDPVVFLEN 196 (356)
T ss_pred HHHHHHHHHHH----hCCCcEEEEEe
Confidence 66666665544 45799999864
No 291
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=75.61 E-value=88 Score=34.98 Aligned_cols=152 Identities=13% Similarity=0.151 Sum_probs=83.5
Q ss_pred CccHHHHHHHHHHHcCCC--EEEe----cCCCChHHHHHhhhc-CCCCeEE-ecCchhHHHHHHhHHhhhcC-ceEEEEc
Q 009060 26 VGTLGRHLARRLVEIGAK--DVFS----VPGDFNLTLLDHLIA-EPELNLV-GCCNELNAGYAADGYARSRG-VGACVVT 96 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~--~vFg----~pG~~~~~l~~al~~-~~~i~~i-~~~hE~~A~~~A~gyar~tg-~gv~~~t 96 (545)
.++..+++.+.|.+..-+ .|+. ++|+..+ +.+.+ .| =|++ ...-|++++.+|.|.|. .| ..+|.+
T Consensus 356 ~~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt~~---~~f~~~fP-dR~fdvGIAEq~~Vg~AaGLA~-~G~rPvv~~- 429 (641)
T PLN02234 356 TQSYTSCFVEALIAEAEADKDIVAIHAAMGGGTML---NLFESRFP-TRCFDVGIAEQHAVTFAAGLAC-EGLKPFCTI- 429 (641)
T ss_pred CCCHHHHHHHHHHHHHHHCcCEEEEECCCCCCcch---HHHHHHcc-ccccCCCcCHHHHHHHHHHHHH-CCCeEEEEe-
Confidence 357777777777766532 3333 3343322 33332 22 3445 46799999999999998 57 555553
Q ss_pred CCcchHHHHHHH-HHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeE-EEEeCChhhHHHHHHH
Q 009060 97 FTVGGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDT 174 (545)
Q Consensus 97 ~GpG~~n~~~~l-~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~ 174 (545)
..+=+.-++.-| .++...+.|++++.-... - .+.+...|+ ...+..+++.+-.. ...+.++.++..+++.
T Consensus 430 fs~Fl~RA~DQI~~dva~~~lpV~~v~~~aG-~-~g~dG~TH~------~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~ 501 (641)
T PLN02234 430 YSSFMQRAYDQVVHDVDLQKLPVRFAIDRAG-L-MGADGPTHC------GAFDVTFMACLPNMIVMAPSDEAELFNMVAT 501 (641)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCEEEEEeCCc-c-CCCCCcccc------ccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 322222333333 234568899987762221 1 122222343 12346677766432 2445566666555544
Q ss_pred HHHHhhhCCCcEEEEeCCCC
Q 009060 175 AISTALKESKPVYISISCNL 194 (545)
Q Consensus 175 A~~~a~~~~GPV~l~iP~dv 194 (545)
|+. ..++|++|..|...
T Consensus 502 a~~---~~~~Pv~ir~~R~~ 518 (641)
T PLN02234 502 AAA---IDDRPSCFRYHRGN 518 (641)
T ss_pred HHh---CCCCCEEEEeeccc
Confidence 432 23699999999764
No 292
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=75.23 E-value=48 Score=36.47 Aligned_cols=124 Identities=12% Similarity=0.007 Sum_probs=77.2
Q ss_pred CeEEecCc---hhHHHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCC---ccc-
Q 009060 66 LNLVGCCN---ELNAGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN---RIL- 136 (545)
Q Consensus 66 i~~i~~~h---E~~A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~---~~~- 136 (545)
-+++.... =..+.-+|.|.+.++. +.+|++--| |+.=....|..|...++|+++|.-+......-+. ...
T Consensus 405 ~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG-~f~m~~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~ 483 (561)
T PRK06048 405 RTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDIAGDG-SFQMNSQELATAVQNDIPVIVAILNNGYLGMVRQWQELFYD 483 (561)
T ss_pred CeEEeCCCccccccHHHHHHHHHHhCCCCcEEEEEeCc-hhhccHHHHHHHHHcCCCeEEEEEECCccHHHHHHHHHHcC
Confidence 45554432 2336667888877763 566665444 3333457899999999999999876543311000 000
Q ss_pred ccccCC--CChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 137 HHTIGL--PDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 137 ~~~~~~--~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
+..... ..-.|..++.+.+--+..++++++++.+.+++|+ ...||+.|++..|-
T Consensus 484 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v~t~~el~~al~~a~----~~~~p~liev~~~~ 539 (561)
T PRK06048 484 KRYSHTCIKGSVDFVKLAEAYGALGLRVEKPSEVRPAIEEAV----ASDRPVVIDFIVEC 539 (561)
T ss_pred CcccccCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 000000 0113567788888777889999988877777776 34789999999873
No 293
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=74.42 E-value=64 Score=35.83 Aligned_cols=154 Identities=12% Similarity=0.069 Sum_probs=85.7
Q ss_pred HHHHHHH-cCCCEEEec-CCCChHHHHHhhhcCCCCeEEecCchhH---HHHHHhHHhhhcC--ceEEEEcCCcchHHH-
Q 009060 33 LARRLVE-IGAKDVFSV-PGDFNLTLLDHLIAEPELNLVGCCNELN---AGYAADGYARSRG--VGACVVTFTVGGLSV- 104 (545)
Q Consensus 33 i~~~L~~-~GV~~vFg~-pG~~~~~l~~al~~~~~i~~i~~~hE~~---A~~~A~gyar~tg--~gv~~~t~GpG~~n~- 104 (545)
+++.|.+ ..=+.++.. .|.........+.-....+++....-.+ +.-+|.|.+.+.. +.+|++ |=|...+
T Consensus 371 ~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la~p~~~Vv~i~--GDG~f~m~ 448 (597)
T PRK08273 371 VFWELSPRLPDNAILTADSGSCANWYARDLRMRRGMMASLSGTLATMGPAVPYAIAAKFAHPDRPVIALV--GDGAMQMN 448 (597)
T ss_pred HHHHHHhhCCCCeEEEECCcHHHHHHHHhCCCCCCCeEEecCccccccchHHHHHHHHHhCCCCcEEEEE--cchhHhcc
Confidence 4444443 222444444 3444333444443222345554432222 2237778666653 555654 4444432
Q ss_pred -HHHHHHhHhc-----CCcEEEEeCCCCCcccCC-------Ccccccc-cCCCChHHHHHHhhhceeEEEEeCChhhHHH
Q 009060 105 -LNAIAGAYSE-----NLPVICIVGGPNSNDYGT-------NRILHHT-IGLPDFTQELRCFQAITCSQAVVNNLGDAHE 170 (545)
Q Consensus 105 -~~~l~~A~~~-----~~Pllvi~g~~~~~~~~~-------~~~~~~~-~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~ 170 (545)
+.-|..|... ++|+++|.-.......-+ +...+.. ....+ .|..++.+.+--...++++++++..
T Consensus 449 ~~~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~-~d~~~lA~a~G~~~~~v~~~~eL~~ 527 (597)
T PRK08273 449 GMAELITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRVMEGDPKFEASQDLPD-VPYARFAELLGLKGIRVDDPEQLGA 527 (597)
T ss_pred chHHHHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHHhcCCCcccccccCCC-CCHHHHHHHCCCEEEEECCHHHHHH
Confidence 3578888887 899999887655321000 0000000 00011 3467788888778899999998887
Q ss_pred HHHHHHHHhhhCCCcEEEEeCCC
Q 009060 171 LIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 171 ~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
.+++|+. ..||+.|++..|
T Consensus 528 al~~a~~----~~~p~lIeV~~~ 546 (597)
T PRK08273 528 AWDEALA----ADRPVVLEVKTD 546 (597)
T ss_pred HHHHHHh----CCCCEEEEEEeC
Confidence 7777764 479999999887
No 294
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=73.67 E-value=10 Score=41.89 Aligned_cols=113 Identities=17% Similarity=0.083 Sum_probs=69.3
Q ss_pred HHHHHhHHhhhcC-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCccc-c--cc--cCCCChHHHHH
Q 009060 77 AGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRIL-H--HT--IGLPDFTQELR 150 (545)
Q Consensus 77 A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~-~--~~--~~~~~~~d~~~ 150 (545)
+.-+|.|.+.+.+ +.+|++--|.=..+ +.-|..|...++|+++|.-+-.....+..... + .. .......|...
T Consensus 429 glpaaiGa~la~~~~vv~i~GDG~f~m~-~~EL~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 507 (569)
T PRK09259 429 GMGYAIAAAVETGKPVVAIEGDSAFGFS-GMEVETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHARYDK 507 (569)
T ss_pred cHHHHHHHHhcCCCcEEEEecCcccccc-HHHHHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCccccccCCCCCHHH
Confidence 4557777776655 65555433322222 46688888999999988876543111100000 0 00 00000135567
Q ss_pred HhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 151 CFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 151 ~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
+.+.+-....++++++++.+.+++|+. ..||+.|++..|-
T Consensus 508 lA~a~G~~~~~v~~~~el~~al~~a~~----~~~p~lIev~id~ 547 (569)
T PRK09259 508 MMEAFGGVGYNVTTPDELRHALTEAIA----SGKPTLINVVIDP 547 (569)
T ss_pred HHHHCCCeEEEECCHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 888887778899999888777777653 5799999999884
No 295
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=72.91 E-value=11 Score=39.03 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHhcC--CCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHH
Q 009060 221 LEAAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGE 298 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~--rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~ 298 (545)
.+++++.+++.|++.+ ...++.|... ..+....+++|++.+|.+-+.+.......+. .....+ .++. ...+
T Consensus 70 WdeAl~~ia~~l~~~~~~si~~~~g~~~-~~e~~~~~~~~~~~~gs~~~~~~~~~~~~~~---~~~~~~--~~~~-~~~d 142 (375)
T cd02773 70 WEEALAAIAKALKGVKPDEIAAIAGDLA-DVESMVALKDLLNKLGSENLACEQDGPDLPA---DLRSNY--LFNT-TIAG 142 (375)
T ss_pred HHHHHHHHHHHHhhcCcCcEEEEeCCCC-CHHHHHHHHHHHHHhCCCccccccccccccc---cccccc--ccCC-CHHH
Confidence 5778889999998765 5555555332 2245567889999999876544322111111 110000 1111 1223
Q ss_pred HhhcCCEEEEeCCCCCCC-cccccc---cCC-CCCcEEEEcCCcc
Q 009060 299 IVESADAYVFVGPIFNDY-SSVGYS---LLI-KKEKAIIVQPHRV 338 (545)
Q Consensus 299 ~l~~aD~vl~lG~~~~~~-~~~~~~---~~~-~~~~~i~id~d~~ 338 (545)
+.++|+||++|+.+.+. ....+. ... .+.++|.||+...
T Consensus 143 -i~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~ 186 (375)
T cd02773 143 -IEEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVD 186 (375)
T ss_pred -HhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCccc
Confidence 58999999999886332 221111 111 3578999987554
No 296
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=72.81 E-value=2.7 Score=43.41 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHhcC-----CCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCc-cceecCCCCCH
Q 009060 221 LEAAVEATADFLNKAV-----KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHF-IGTYWGAVSSS 294 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~-----rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~-~G~~~G~~~~~ 294 (545)
.+++++.+++.|++.+ ..+.+.++.....+....+.+|...++.+.+.........+....+. .|. +....
T Consensus 73 WdeAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~- 149 (374)
T cd00368 73 WDEALDEIAEKLKEIREKYGPDAIAFYGGGGASNEEAYLLQKLLRALGSNNVDSHARLCHASAVAALKAFGG--GAPTN- 149 (374)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHHhcCCCccCCCCcccHHHHHHHHHHhCC--CCCCC-
Confidence 5678888888888763 45554443333333445556688888888765433222111111110 011 11111
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCccccccc----CCCCCcEEEEcCCccee
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVTV 340 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~~~~ 340 (545)
.. .-+.++|+||++|+.+.+........ ..++.|+|.||+.....
T Consensus 150 ~~-~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t 198 (374)
T cd00368 150 TL-ADIENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTET 198 (374)
T ss_pred CH-HHHhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcc
Confidence 12 22469999999998753222211111 11467899999877543
No 297
>PRK12474 hypothetical protein; Provisional
Probab=72.78 E-value=17 Score=39.55 Aligned_cols=108 Identities=14% Similarity=0.077 Sum_probs=68.0
Q ss_pred HHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCC-Cc-cc-----cc----cc--CC
Q 009060 78 GYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGT-NR-IL-----HH----TI--GL 142 (545)
Q Consensus 78 ~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~-~~-~~-----~~----~~--~~ 142 (545)
.-+|.|.+.+.. +.+|++--| ++.=.+.-|..|...++|+++|.-+......-+ .. .. .. .. ..
T Consensus 395 lpaAiGa~lA~p~r~vv~i~GDG-~f~m~~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~ 473 (518)
T PRK12474 395 LPLAAGAAVAAPDRKVVCPQGDG-GAAYTMQALWTMARENLDVTVVIFANRSYAILNGELQRVGAQGAGRNALSMLDLHN 473 (518)
T ss_pred HHHHHHHHHHCCCCcEEEEEcCc-hhcchHHHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCCCccccccccCCC
Confidence 347888777763 555554333 233335888889999999999987654331101 00 00 00 00 00
Q ss_pred CChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeC
Q 009060 143 PDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (545)
Q Consensus 143 ~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP 191 (545)
.+ .|..++.+.+-....++++++++...+++|+ ...||+.|++.
T Consensus 474 ~~-~d~~~lA~a~G~~~~rv~~~~eL~~al~~a~----~~~~p~liev~ 517 (518)
T PRK12474 474 PE-LNWMKIAEGLGVEASRATTAEEFSAQYAAAM----AQRGPRLIEAM 517 (518)
T ss_pred CC-CCHHHHHHHCCCeEEEeCCHHHHHHHHHHHH----cCCCCEEEEEE
Confidence 01 2567788888778899999988888777775 34789999875
No 298
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=72.76 E-value=22 Score=36.81 Aligned_cols=113 Identities=11% Similarity=0.049 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHHhcC--CCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHH
Q 009060 221 LEAAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGE 298 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~--rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~ 298 (545)
.+++++.+++.|.+.+ +-.+++|... ..+..-.+++|++.+|...+.+.......+-.+.. .|.+. .. ..-.
T Consensus 71 W~eAl~~ia~~l~~~~~~~i~~i~g~~~-t~E~~~~lkkl~~~lgs~n~d~~~~~~~~~~~~~~-~~~~~--~~--~sl~ 144 (366)
T cd02774 71 WKTAFKFLNKFILLKKFSKLNFIIGSKI-DLETLFYYKKLLNKLGSLNTNSNNFLENNNYFNLD-LENYL--FN--NSLK 144 (366)
T ss_pred HHHHHHHHHHHHhhcCcccEEEEECCCC-CHHHHHHHHHHHHHhCCCceecccccccccccccc-ccCCc--cC--CCHH
Confidence 4667777788776543 3455566543 44677788999999998887643221110111111 12221 11 1122
Q ss_pred HhhcCCEEEEeCCCCCCCccc-ccc--c-C-CCCCcEEEEcCCccee
Q 009060 299 IVESADAYVFVGPIFNDYSSV-GYS--L-L-IKKEKAIIVQPHRVTV 340 (545)
Q Consensus 299 ~l~~aD~vl~lG~~~~~~~~~-~~~--~-~-~~~~~~i~id~d~~~~ 340 (545)
-+.++|+||++|+.+.+-... ... . . ..+.+++.|++.. ++
T Consensus 145 die~ad~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~-~~ 190 (366)
T cd02774 145 NLDKSDLCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKF-DT 190 (366)
T ss_pred HHhhCCEEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCcc-cc
Confidence 367999999999886433321 111 1 1 1356888888766 44
No 299
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=72.24 E-value=45 Score=33.45 Aligned_cols=157 Identities=15% Similarity=0.066 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHHHHHhhh-cC-CCCeEEecCchhHHHHHHhHHhhhc---C---ceEEEEcCCcc
Q 009060 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLI-AE-PELNLVGCCNELNAGYAADGYARSR---G---VGACVVTFTVG 100 (545)
Q Consensus 29 ~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~-~~-~~i~~i~~~hE~~A~~~A~gyar~t---g---~gv~~~t~GpG 100 (545)
.-..|.+.+ |=+.|+.. +.....+.-... .. -.+.++...+|.+++++ .|.+++. + ..+++.--|-.
T Consensus 29 ~~~~l~~a~---g~~~vi~~-~iGC~s~~~~~~p~~~~~~~~~~~~fg~~~a~a-~Gi~~a~~~~~~~~~Vv~~~GDG~~ 103 (299)
T PRK11865 29 AMRLALKAL---GKNTVIVV-ATGCLEVITTPYPETAWNVPWIHVAFENAAAVA-SGIERAVKALGKKVNVVAIGGDGGT 103 (299)
T ss_pred HHHHHHHHc---CCCEEEEe-CCCcccccCccCcCCccccccchhhhcchHHHH-HHHHHHHHHhcCCCeEEEEeCCchH
Confidence 344444444 54555544 333344443221 11 14667777778777654 4444442 3 34444433333
Q ss_pred hHHHHHHHHHhHhcCCcEEEEeCCCCCccc-C-CCcc----------cc---cccC-CCChHHHHHHhhhc-eeEEEEeC
Q 009060 101 GLSVLNAIAGAYSENLPVICIVGGPNSNDY-G-TNRI----------LH---HTIG-LPDFTQELRCFQAI-TCSQAVVN 163 (545)
Q Consensus 101 ~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~-~-~~~~----------~~---~~~~-~~~~~d~~~~~~~~-~k~~~~v~ 163 (545)
....++++..|...+.++++|.=|...... | +... .. ...+ ...-.|...++..+ +.|..++.
T Consensus 104 ~dIG~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~ 183 (299)
T PRK11865 104 ADIGFQSLSGAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATAS 183 (299)
T ss_pred hhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEe
Confidence 445678999999999999998866443211 1 0000 00 0000 00012334444333 34554443
Q ss_pred ChhhHHHHHHHHHHHhhhCCCcEEEEeCC
Q 009060 164 NLGDAHELIDTAISTALKESKPVYISISC 192 (545)
Q Consensus 164 ~~~~~~~~l~~A~~~a~~~~GPV~l~iP~ 192 (545)
+. -+..+.++++.|...+||.+|.+-.
T Consensus 184 -~~-~~~~l~~~i~~A~~~~Gps~I~v~s 210 (299)
T PRK11865 184 -IG-YPEDFMEKVKKAKEVEGPAYIQVLQ 210 (299)
T ss_pred -CC-CHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 22 2333456666666678999998753
No 300
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=72.22 E-value=9.9 Score=37.85 Aligned_cols=43 Identities=23% Similarity=0.401 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh-hcCCEEEEeCCCC
Q 009060 254 AFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV-ESADAYVFVGPIF 313 (545)
Q Consensus 254 ~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l-~~aD~vl~lG~~~ 313 (545)
....+||.+++||+||+-| .| ......+++ .+.|.||.+|...
T Consensus 43 lA~~iaellNA~Vlttpwg-------------~y----nes~~~eI~~lnpd~VLIIGGp~ 86 (337)
T COG2247 43 LALPIAELLNAPVLTTPWG-------------IY----NESVLDEIIELNPDLVLIIGGPI 86 (337)
T ss_pred HhhHHHHHhCCeeEecCcc-------------cc----cHHHHHHHHhhCCceEEEECCCC
Confidence 3466999999999988732 22 222233444 4899999999764
No 301
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=72.21 E-value=9.2 Score=42.56 Aligned_cols=114 Identities=13% Similarity=0.035 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHH
Q 009060 220 GLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (545)
Q Consensus 220 ~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~ 299 (545)
+.+++++.+++.|++.++..++.|.... .+....+.+|++.+|.+-+.....-.... ..+...+. ..|. . ..-
T Consensus 287 sWdeAl~~ia~kL~~i~~va~~~~~~~~-~e~~~~~~~~~~~lGt~~~~~~~~~~~~~-~~~~~~~~---~~g~-~-~~d 359 (603)
T TIGR01973 287 SWAEALAIAAEKLKASSRIGGIAGPRSS-LEELFALKKLVRKLGSENFDLRIRNYEFE-SADLRANY---LFNT-T-LAD 359 (603)
T ss_pred CHHHHHHHHHHHHhccCcEEEEeCCCCC-HHHHHHHHHHHHHhCCCcccccccccccc-cchhhccc---ccCC-C-HHH
Confidence 3567788888888887666666664432 23446788999999876443221110000 01111111 1121 1 223
Q ss_pred hhcCCEEEEeCCCCCCCccccccc---C-CCC-CcEEEEcCCccee
Q 009060 300 VESADAYVFVGPIFNDYSSVGYSL---L-IKK-EKAIIVQPHRVTV 340 (545)
Q Consensus 300 l~~aD~vl~lG~~~~~~~~~~~~~---~-~~~-~~~i~id~d~~~~ 340 (545)
+.++|+||++|+.+.+.....+.. . .++ .|+|.||+.....
T Consensus 360 i~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~t 405 (603)
T TIGR01973 360 IEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNL 405 (603)
T ss_pred HHhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccc
Confidence 578999999998864433221111 1 123 6899999766544
No 302
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=71.96 E-value=10 Score=44.46 Aligned_cols=116 Identities=13% Similarity=-0.038 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHh------cCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCH
Q 009060 221 LEAAVEATADFLNK------AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSS 294 (545)
Q Consensus 221 ~~~~i~~~~~~l~~------a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~ 294 (545)
-+++++.+++.|.+ .+...++.|.+...........+|+..+|.+........+.....++...|.. ..+.
T Consensus 141 WdEAld~IA~kl~~i~~~~Gp~si~~~~~~~~~~~~~~~~~~r~~~~lG~~~~~~~~~~~~~~~~~~~~~G~~--~~~~- 217 (912)
T TIGR03479 141 WDEALTEIADKIIDTFEAQGPDGISLDTPHPHMAPISFAAGSRFANLIGGVSPDIFDDYGDLYTGAFHTFGKA--HDSA- 217 (912)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEeCCCCchhhHHHHHHHHHHHHcCCCccccccccCCCCCcccceeccC--ccCC-
Confidence 46777777777754 23333333544332222344578899888765432211122222333333321 1111
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCccccccc----CCCCCcEEEEcCCccee
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVTV 340 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~~~~ 340 (545)
. ..-+.+||+||++|+.........+.. ..+++|+|.||++....
T Consensus 218 ~-~~D~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~t 266 (912)
T TIGR03479 218 T-SDDWFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPS 266 (912)
T ss_pred c-hhhhhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChh
Confidence 1 223578999999998864332211111 12467999999987654
No 303
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=71.56 E-value=6 Score=32.29 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=28.7
Q ss_pred cCCCEEEcCccccccchHHHHHHHHHHhCCceE
Q 009060 235 AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (545)
Q Consensus 235 a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~ 267 (545)
.++.++++|.|...+-....+++++++.|+++-
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~ 35 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVK 35 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEE
Confidence 467899999999877777999999999999873
No 304
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=70.86 E-value=30 Score=32.34 Aligned_cols=101 Identities=14% Similarity=0.192 Sum_probs=62.8
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHH--HHHhhh-----cCCCCeEEecCchhHHHHHH--------hHHhhh---c
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLI-----AEPELNLVGCCNELNAGYAA--------DGYARS---R 88 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~--l~~al~-----~~~~i~~i~~~hE~~A~~~A--------~gyar~---t 88 (545)
...++.|++.|.+.+-=++||+-|+.... +...|. ..++++.+....+.. ..+| .-|+|. .
T Consensus 28 ~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~-~~ta~and~~~~~~f~~ql~~~ 106 (196)
T PRK10886 28 SRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNV-VLTAIANDRLHDEVYAKQVRAL 106 (196)
T ss_pred HHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHH-HHHHHhccccHHHHHHHHHHHc
Confidence 45678888888888988999998876543 332331 135677774433322 2222 112221 1
Q ss_pred C-c-eEEEEcCCcc-hHHHHHHHHHhHhcCCcEEEEeCCCCCc
Q 009060 89 G-V-GACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSN 128 (545)
Q Consensus 89 g-~-gv~~~t~GpG-~~n~~~~l~~A~~~~~Pllvi~g~~~~~ 128 (545)
. + =++++.|+.| ..|.+.++..|...+.|+|.||+.....
T Consensus 107 ~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~ 149 (196)
T PRK10886 107 GHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGE 149 (196)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 2 2 2344444444 5678899999999999999999976554
No 305
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=70.13 E-value=44 Score=32.59 Aligned_cols=94 Identities=18% Similarity=0.113 Sum_probs=51.8
Q ss_pred EEEEcCCcchHH---HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeC--Chh
Q 009060 92 ACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN--NLG 166 (545)
Q Consensus 92 v~~~t~GpG~~n---~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~--~~~ 166 (545)
-+++..|=|..+ ..-++..|...++|.|++.-+......... .+... ...+...+++.+--...++. +.+
T Consensus 129 ~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~--~~~~~---~~~~~~~~~~a~G~~~~~v~G~d~~ 203 (255)
T cd02012 129 RVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGP--TDDIL---FTEDLAKKFEAFGWNVIEVDGHDVE 203 (255)
T ss_pred EEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCc--Hhhcc---CchhHHHHHHHcCCeEEEECCCCHH
Confidence 333445666665 578888899999984444444332211110 00011 12355677777744455666 555
Q ss_pred hHHHHHHHHHHHhhhC-CCcEEEEeCCCC
Q 009060 167 DAHELIDTAISTALKE-SKPVYISISCNL 194 (545)
Q Consensus 167 ~~~~~l~~A~~~a~~~-~GPV~l~iP~dv 194 (545)
++. +|++.|... .+|+.|++-..-
T Consensus 204 ~l~----~al~~a~~~~~~P~~I~~~t~k 228 (255)
T cd02012 204 EIL----AALEEAKKSKGKPTLIIAKTIK 228 (255)
T ss_pred HHH----HHHHHHHHcCCCCEEEEEEeec
Confidence 554 445555443 689999887654
No 306
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=70.03 E-value=58 Score=32.29 Aligned_cols=155 Identities=15% Similarity=0.094 Sum_probs=85.8
Q ss_pred ccHHHHHHHHHHHcC---CCEEEecCCCChHHHHHhhhc-CCCCeEE-ecCchhHHHHHHhHHhhhcCceEEEEcCCcch
Q 009060 27 GTLGRHLARRLVEIG---AKDVFSVPGDFNLTLLDHLIA-EPELNLV-GCCNELNAGYAADGYARSRGVGACVVTFTVGG 101 (545)
Q Consensus 27 ~~~a~~i~~~L~~~G---V~~vFg~pG~~~~~l~~al~~-~~~i~~i-~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~ 101 (545)
.+..+.+.+.|.++| -+-|.-........=...+.+ .|+ |++ ..--||....+|.|.|..--...+. |.++=+
T Consensus 7 ~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~f~~~fPd-R~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~-tfa~F~ 84 (312)
T COG3958 7 ESLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGYFAKEFPD-RFFNVGIAEQDMVGTAAGLALAGKKPFVS-TFAAFL 84 (312)
T ss_pred hHHHHHHHHHHHHHHhcCCCEEEEecccccccchhHHHHhCch-hheecchHHHHHHHHHHHHHhcCCCceee-chHHHH
Confidence 445556666665554 444544444333222223332 222 344 4679999999999999874333322 444322
Q ss_pred H-HHHHHHHHh-HhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHh
Q 009060 102 L-SVLNAIAGA-YSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTA 179 (545)
Q Consensus 102 ~-n~~~~l~~A-~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a 179 (545)
+ -+.-=|.++ -+++.||=++..........-+ ..| |...-+.++|.+.+...... .|.. ..+.++..+
T Consensus 85 s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG-~sH------q~~EDiaimR~lpn~~V~~P--~D~v-~~~~i~~~~ 154 (312)
T COG3958 85 SRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDG-SSH------QALEDIAIMRGLPNMTVIAP--ADAV-ETRAILDQI 154 (312)
T ss_pred HHHHHHHHHHHhhhccCCeEEEEecCCcccCCCC-ccc------hhHHHHHHHhcCCCceEEcc--CcHH-HHHHHHHHH
Confidence 2 222223332 2467777666665443321111 223 34455889998877555443 3333 566677777
Q ss_pred hhCCCcEEEEeCCC
Q 009060 180 LKESKPVYISISCN 193 (545)
Q Consensus 180 ~~~~GPV~l~iP~d 193 (545)
...+||+|+.+..+
T Consensus 155 ~~~~GP~Y~Rl~R~ 168 (312)
T COG3958 155 ADYKGPVYMRLGRG 168 (312)
T ss_pred HhcCCCEEEEecCC
Confidence 77899999999983
No 307
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=69.95 E-value=4.2 Score=38.89 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=32.2
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCcccccccC--CCCCcEEEEcCCccee
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTV 340 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~ 340 (545)
.+.+.+.+||++|++|+++.-.....+... ..+.++|.||.++...
T Consensus 164 ~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~~~~~ 211 (222)
T cd01413 164 EAIEAAKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNADETPF 211 (222)
T ss_pred HHHHHHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCCCCCC
Confidence 445667899999999999865554333222 2456899999988654
No 308
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=69.76 E-value=4.2 Score=38.45 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=32.5
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCccccccc--CCCCCcEEEEcCCccee
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTV 340 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~ 340 (545)
.+.+.++++|++|++|+++.-.....+.. ...+.++|.|+.++...
T Consensus 148 ~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~~~ 195 (206)
T cd01410 148 GAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPTPK 195 (206)
T ss_pred HHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCCCC
Confidence 45566789999999999986555443322 12456899999988755
No 309
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=69.30 E-value=11 Score=39.55 Aligned_cols=112 Identities=13% Similarity=-0.011 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHhcCC-----CEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCcccee-cCCCCCH
Q 009060 221 LEAAVEATADFLNKAVK-----PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTY-WGAVSSS 294 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~r-----pvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~-~G~~~~~ 294 (545)
.+++++.+++.|.+.++ -+.+.+++-...+....+.+|++.+|.|.+....... +.....+.. .+..+.
T Consensus 71 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~e~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~- 145 (414)
T cd02772 71 WETALEYVAEGLSAIIKKHGADQIGALASPHSTLEELYLLQKLARGLGSDNIDHRLRQS----DFRDDAKASGAPWLGM- 145 (414)
T ss_pred HHHHHHHHHHHHHHHHHhcCcceEEEEecCCCCcHHHHHHHHHHHHhCCCCccCccccC----ccchhhhhccCCCCCC-
Confidence 56788888888876432 2333322222234556789999999998764321111 000001100 011121
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCccccccc----CCCCCcEEEEcCCcc
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRV 338 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~~ 338 (545)
. ..-+.++|+||++|+.+.+.....+.. .-++.|+|.||+-..
T Consensus 146 ~-~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~ 192 (414)
T cd02772 146 P-IAEISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADD 192 (414)
T ss_pred c-HHHHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccc
Confidence 1 233688999999999864322211111 113568999987544
No 310
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=69.25 E-value=4.6 Score=39.91 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=33.6
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCcccccccC--CCCCcEEEEcCCccee
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTV 340 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~ 340 (545)
.+.+.+++||++|++|+++.-.....+... ..+.++|.|+.++..+
T Consensus 192 ~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~~ 239 (271)
T PTZ00409 192 QAEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTYI 239 (271)
T ss_pred HHHHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 456677899999999999876655443322 2467899999988765
No 311
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=69.15 E-value=1.4e+02 Score=33.82 Aligned_cols=155 Identities=12% Similarity=0.090 Sum_probs=84.0
Q ss_pred CccHHHHHHHHHHHcC--CCEEEecCCCC-hHHHHHhhhc-CCCCeEE-ecCchhHHHHHHhHHhhhcC-ceEEEEcCCc
Q 009060 26 VGTLGRHLARRLVEIG--AKDVFSVPGDF-NLTLLDHLIA-EPELNLV-GCCNELNAGYAADGYARSRG-VGACVVTFTV 99 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~G--V~~vFg~pG~~-~~~l~~al~~-~~~i~~i-~~~hE~~A~~~A~gyar~tg-~gv~~~t~Gp 99 (545)
.++..+++.+.|.+.. =+.|+.+-.+. .-.-++.+.+ .| =|++ ...-|+.++.+|.|.|. .| ..+|.+-+ +
T Consensus 380 ~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtgl~~f~~~fP-dRffDvGIAEQhaVt~AAGLA~-~G~kPvv~iys-t 456 (701)
T PLN02225 380 RRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDASLITFQERFP-DRFFNVGMAEQHAVTFSAGLSS-GGLKPFCIIPS-A 456 (701)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcccHHHHHHHcc-ccccccCccHHHHHHHHHHHHH-CCCEEEEEeeh-h
Confidence 3566766666666553 24555552221 1112333432 22 2444 46799999999999996 57 45544332 2
Q ss_pred chHHHHHHHHH-hHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEE-EEeCChhhHHHHHHHHHH
Q 009060 100 GGLSVLNAIAG-AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAIS 177 (545)
Q Consensus 100 G~~n~~~~l~~-A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~~ 177 (545)
=+.-++.-|.. +...+.||.++.- +.. ..+.+...||.. ..+.+++.+-... ..+.+++++..+++.|+.
T Consensus 457 FlqRAyDQI~~Dval~~lpV~~vid-~aG-lvg~DG~TH~g~------~Dia~lr~IPnm~V~aPsD~~El~~mL~~A~~ 528 (701)
T PLN02225 457 FLQRAYDQVVHDVDRQRKAVRFVIT-SAG-LVGSDGPVQCGA------FDIAFMSSLPNMIAMAPADEDELVNMVATAAY 528 (701)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEE-CCc-cCCCCCcccccc------HHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh
Confidence 22233333333 4556678776643 322 123222234322 2367888875543 344556666666555442
Q ss_pred HhhhCCCcEEEEeCCCC
Q 009060 178 TALKESKPVYISISCNL 194 (545)
Q Consensus 178 ~a~~~~GPV~l~iP~dv 194 (545)
..++||+|..|...
T Consensus 529 ---~~~gPv~IR~pRg~ 542 (701)
T PLN02225 529 ---VTDRPVCFRFPRGS 542 (701)
T ss_pred ---cCCCCEEEEecccc
Confidence 34799999999873
No 312
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=68.93 E-value=36 Score=35.18 Aligned_cols=117 Identities=12% Similarity=0.030 Sum_probs=64.5
Q ss_pred eEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHH---HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCC
Q 009060 67 NLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGL 142 (545)
Q Consensus 67 ~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~ 142 (545)
.-+...+=-.|+.+|.+. |..| ..++++..|=|++| ..-++--|...+.|+|+|+=+.... .+.- .. .+.
T Consensus 137 ~~~vG~~~p~A~G~A~A~-k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~~a-ist~--~~--~~~ 210 (362)
T PLN02269 137 HGIVGAQVPLGAGLAFAQ-KYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHYG-MGTA--EW--RAA 210 (362)
T ss_pred CchhhccccHHHHHHHHH-HHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCCEe-ccCc--hh--hhc
Confidence 344455555666777663 3445 66777777866654 5566666778899999998653211 1110 00 000
Q ss_pred CChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeC
Q 009060 143 PDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (545)
Q Consensus 143 ~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP 191 (545)
. ..+.......+.-..+.=.++..+.+.+..|++.++. .||+.|++-
T Consensus 211 ~-~~~~~~~~~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~ 257 (362)
T PLN02269 211 K-SPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMD 257 (362)
T ss_pred c-chHHHHhhcCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence 0 0010000011111222233566777788888888888 899999964
No 313
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=68.90 E-value=98 Score=33.96 Aligned_cols=109 Identities=13% Similarity=0.045 Sum_probs=68.4
Q ss_pred HHhHHhhhc--C-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCC-ccc--ccccCC-CChHHHHHHh
Q 009060 80 AADGYARSR--G-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN-RIL--HHTIGL-PDFTQELRCF 152 (545)
Q Consensus 80 ~A~gyar~t--g-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~-~~~--~~~~~~-~~~~d~~~~~ 152 (545)
+|.|.+.+. + +.+|++--| ++.=.+..|..|...++|+++|.-+......-+. ... +...+. ....|...+.
T Consensus 404 aaiGa~la~p~~~~Vv~i~GDG-sf~~~~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA 482 (549)
T PRK06457 404 GSVGASFAVENKRQVISFVGDG-GFTMTMMELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYPEWGVDLYNPDFTKIA 482 (549)
T ss_pred HHHHHHhcCCCCCeEEEEEccc-HHhhhHHHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcCCcccccCCCCCHHHHH
Confidence 677866664 3 566654333 3444468889999999999998876544311000 000 000000 0013567788
Q ss_pred hhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 153 QAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 153 ~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
+.+--...++++++++...+++|+ ...||+.|++-.|
T Consensus 483 ~a~G~~~~~v~~~~el~~al~~a~----~~~~p~lIeV~i~ 519 (549)
T PRK06457 483 ESIGFKGFRLEEPKEAEEIIEEFL----NTKGPAVLDAIVD 519 (549)
T ss_pred HHCCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEeC
Confidence 888667789999988877777765 3578999999887
No 314
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=68.36 E-value=5.2 Score=39.31 Aligned_cols=47 Identities=19% Similarity=0.164 Sum_probs=33.4
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCccccccc--CCCCCcEEEEcCCcceec
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVG 341 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~ 341 (545)
.+.+.+.+||++|+||+++.-.....+.. ...+.++|.||.++..+.
T Consensus 197 ~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~t~~d 245 (260)
T cd01409 197 TAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPTRAD 245 (260)
T ss_pred HHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCCCCCC
Confidence 45667789999999999986554433321 124678999999887653
No 315
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=68.20 E-value=8.6 Score=43.36 Aligned_cols=115 Identities=19% Similarity=0.162 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHh------cCCCEEEcCccccccchHHHHHHHHHH-hCCceEeCCCCccCCCC--CCCCccceecCCC
Q 009060 221 LEAAVEATADFLNK------AVKPVLVGGPNIRVAKAQKAFIELADA-TGYPIAIMPSGKGLVPE--HHPHFIGTYWGAV 291 (545)
Q Consensus 221 ~~~~i~~~~~~l~~------a~rpvi~~G~g~~~~~a~~~l~~lae~-~~~Pv~tt~~~kg~~~~--~hpl~~G~~~G~~ 291 (545)
-+++++.+++.|++ .++..++.|.+.. .+....+.+|++. +|.+-+.+.......+. .+...+|. +..
T Consensus 70 WdeAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~-~e~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~G~--~~~ 146 (671)
T TIGR01591 70 WDEAISYIAEKLKEIKEKYGPDSIGFIGSSRGT-NEENYLLQKLARAVIGTNNVDNCARVCHGPSVAGLKQTVGI--GAM 146 (671)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCcc-cHHHHHHHHHHHHhcCCccccCCCCceehhhhHHHHHhhCC--CCC
Confidence 46778888888873 3455666665543 2345567889996 89886543221111111 11111222 111
Q ss_pred CCHHHHHHhhcCCEEEEeCCCCCCCccccccc----CCCCCcEEEEcCCccee
Q 009060 292 SSSFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVTV 340 (545)
Q Consensus 292 ~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~~~~ 340 (545)
+. . ..-+.++|+||++|+.+.+.....+.. ..++.|+|.||+.....
T Consensus 147 ~~-~-~~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~t 197 (671)
T TIGR01591 147 SN-T-ISEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTET 197 (671)
T ss_pred CC-C-HHHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChh
Confidence 11 1 123678999999998764332211111 12467999998866543
No 316
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=68.00 E-value=9 Score=42.28 Aligned_cols=114 Identities=18% Similarity=0.105 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHHHhc--CCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCC--CCCCccceecCCCCCHH
Q 009060 220 GLEAAVEATADFLNKA--VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPE--HHPHFIGTYWGAVSSSF 295 (545)
Q Consensus 220 ~~~~~i~~~~~~l~~a--~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~--~hpl~~G~~~G~~~~~~ 295 (545)
.-+++++.+++.|++. ++.+++.++.. ..++.-....|++.+|.+-+.....-...+. ..+..+|. +. ++..
T Consensus 82 SWDEAl~~IA~kL~~~~~~~~~~y~sg~~-snE~~~l~q~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~--~~-~t~~ 157 (574)
T cd02767 82 SWDEAFAEIAARLRALDPDRAAFYTSGRA-SNEAAYLYQLFARAYGTNNLPDCSNMCHEPSSVGLKKSIGV--GK-GTVS 157 (574)
T ss_pred cHHHHHHHHHHHHhhhCCCcEEEEecCCC-ccHHHHHHHHHHHHhCCCCcCCCCCCcchHHHhHHHHhcCC--CC-CCCC
Confidence 3577888888888876 34444443322 2234446678999999875532211110000 01112232 11 1111
Q ss_pred HHHHhhcCCEEEEeCCCCCCCccccccc----CCCCCcEEEEcCCcc
Q 009060 296 CGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRV 338 (545)
Q Consensus 296 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~~ 338 (545)
.+-+.++|+||++|..........+.. .-++.|+|.||+..+
T Consensus 158 -~~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 158 -LEDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred -HHHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 223578999999998864332211111 114679999998654
No 317
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=67.64 E-value=47 Score=33.30 Aligned_cols=124 Identities=15% Similarity=0.030 Sum_probs=64.7
Q ss_pred CCeEEecCchhHHHHHHhHHhhh---cC-c-eEEEEcCCcchH--HHHHHHHHhHhcCCcEEEEeCCCCCcc--------
Q 009060 65 ELNLVGCCNELNAGYAADGYARS---RG-V-GACVVTFTVGGL--SVLNAIAGAYSENLPVICIVGGPNSND-------- 129 (545)
Q Consensus 65 ~i~~i~~~hE~~A~~~A~gyar~---tg-~-gv~~~t~GpG~~--n~~~~l~~A~~~~~Pllvi~g~~~~~~-------- 129 (545)
++.++...++.+++.++ |.+++ .| . ..+++..|=|.+ ..+.++..|...+.|+++|.=+.....
T Consensus 63 ~~~~i~~~~G~~~~~A~-G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~ 141 (300)
T PRK11864 63 TVPVLHTAFAATAAVAS-GIEEALKARGEKGVIVVGWAGDGGTADIGFQALSGAAERNHDILYIMYDNEAYMNTGIQRSS 141 (300)
T ss_pred cccceeehhhChHHHHH-HHHHHHHhhCCCCcEEEEEEccCccccccHHHHHHHHHhCcCEEEEEECCeeeecCCCCCCC
Confidence 46667777777665543 33333 22 2 222224444433 345899999999999999976533211
Q ss_pred -cCCCccccc-ccCCC-ChHHHHHHhhhc-eeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeC
Q 009060 130 -YGTNRILHH-TIGLP-DFTQELRCFQAI-TCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (545)
Q Consensus 130 -~~~~~~~~~-~~~~~-~~~d~~~~~~~~-~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP 191 (545)
...+....- ..|.. .-.|...++..+ ..|..++.. .+ +..+.++++.|...+||.+|.+=
T Consensus 142 ~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~-~~-~~~~~~~i~~A~~~~Gps~I~~~ 205 (300)
T PRK11864 142 STPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASI-AY-PEDFIRKLKKAKEIRGFKFIHLL 205 (300)
T ss_pred CCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeC-CC-HHHHHHHHHHHHhCCCCEEEEEe
Confidence 111100000 00000 112344555544 346555543 22 34456677777778999999764
No 318
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=67.35 E-value=4.8 Score=38.61 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=31.4
Q ss_pred HHHHhhcCCEEEEeCCCCCCCcccccccCC-CCCcEEEEcCCcceec
Q 009060 296 CGEIVESADAYVFVGPIFNDYSSVGYSLLI-KKEKAIIVQPHRVTVG 341 (545)
Q Consensus 296 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~ 341 (545)
+.+.++++|++|++|+++.-.....+.... ++.++|.|+.++..+.
T Consensus 165 ~~~~~~~~DlllviGTSl~v~p~~~l~~~~~~~~~~i~iN~~~~~~~ 211 (225)
T cd01411 165 AIQAIEKADLLVIVGTSFVVYPFAGLIDYRQAGANLIAINKEPTQLD 211 (225)
T ss_pred HHHHHhcCCEEEEECcCCeehhHHHHHHHHhCCCeEEEECCCCCCCC
Confidence 456678999999999987544332222222 3778999999887653
No 319
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=66.56 E-value=52 Score=30.57 Aligned_cols=101 Identities=13% Similarity=0.068 Sum_probs=61.2
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHh--hh-----cCCCCeEEecCchhHHH-----------HHHhHHhhhc
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDH--LI-----AEPELNLVGCCNELNAG-----------YAADGYARSR 88 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~a--l~-----~~~~i~~i~~~hE~~A~-----------~~A~gyar~t 88 (545)
...++.|.+.|.+.|-=++||+-++......-+ +. ...++..+.. .+.+.. .++.-.+..-
T Consensus 31 ~~a~~~i~~al~~~~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~-~d~~~~~~~~~d~~~~~~~~~~~~~~~ 109 (192)
T PRK00414 31 QRAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAI-SDVSHLSCVSNDFGYDYVFSRYVEAVG 109 (192)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEec-CcHHHHhhhhccCCHHHHHHHHHHHhC
Confidence 456777888888889999999977765433222 21 1245665544 332211 1111112111
Q ss_pred Cc-eEEEEcCCcc-hHHHHHHHHHhHhcCCcEEEEeCCCCCc
Q 009060 89 GV-GACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSN 128 (545)
Q Consensus 89 g~-gv~~~t~GpG-~~n~~~~l~~A~~~~~Pllvi~g~~~~~ 128 (545)
.+ -++++.|..| ..+.+.++..|...++|+|.||+.....
T Consensus 110 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~ 151 (192)
T PRK00414 110 REGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGK 151 (192)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 22 3555555665 5578899999999999999999975544
No 320
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=65.73 E-value=10 Score=30.92 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=26.5
Q ss_pred CCEEEcCccccccchHHHHHHHHHHhCCce
Q 009060 237 KPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (545)
Q Consensus 237 rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv 266 (545)
|.++++|.|...+-..+.++++++..|+|+
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~ 30 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDA 30 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCce
Confidence 357899999988877889999999999996
No 321
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=65.50 E-value=22 Score=44.52 Aligned_cols=112 Identities=13% Similarity=0.027 Sum_probs=71.2
Q ss_pred HHHHhHHhhhcC-ceEEEEcCCcchHHHHHHHHHhHh--cCCcEEEEeCCCCCcccCCC--------c-ccccccCCCCh
Q 009060 78 GYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYS--ENLPVICIVGGPNSNDYGTN--------R-ILHHTIGLPDF 145 (545)
Q Consensus 78 ~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~l~~A~~--~~~Pllvi~g~~~~~~~~~~--------~-~~~~~~~~~~~ 145 (545)
.-+|.|.+...+ +.+|+ +.--++.--++.|..|.. .+.|+++|.-+......-+. . .....+....-
T Consensus 767 lpaAIGaala~~r~Vv~i-~GDGsF~m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~~~~~~~~~~~~~~~~~ 845 (1655)
T PLN02980 767 LSTAIGFAVGCNKRVLCV-VGDISFLHDTNGLSILSQRIARKPMTILVINNHGGAIFSLLPIAKRTEPRVLNQYFYTSHD 845 (1655)
T ss_pred HHHHHHHhhcCCCCEEEE-EehHHHHhhhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccCCCCcchhHHHHhcCCCC
Confidence 446677666555 55555 444466667899999877 48999888876543211000 0 00000111111
Q ss_pred HHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 146 TQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 146 ~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
.|...+.+.+-....++++++++.+.+++|+ ..+||..|++..|-
T Consensus 846 ~df~~lA~a~G~~~~rV~~~~eL~~aL~~a~----~~~~p~lIEV~t~~ 890 (1655)
T PLN02980 846 ISIENLCLAHGVRHLHVGTKSELEDALFTSQ----VEQMDCVVEVESSI 890 (1655)
T ss_pred CCHHHHHHHcCCceeecCCHHHHHHHHHHhh----ccCCCEEEEEecCh
Confidence 3567788888888899999988877776655 45899999999874
No 322
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=64.96 E-value=14 Score=37.32 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCccccccc--------hHHHHHHHHHHhCCceEeC---CCCcc---------------C
Q 009060 222 EAAVEATADFLNKAVKPVLVGGPNIRVAK--------AQKAFIELADATGYPIAIM---PSGKG---------------L 275 (545)
Q Consensus 222 ~~~i~~~~~~l~~a~rpvi~~G~g~~~~~--------a~~~l~~lae~~~~Pv~tt---~~~kg---------------~ 275 (545)
.+.+.++++++++|+..+|+.|-|...+. +...+++|-|...+-++.. .+-.| -
T Consensus 232 ~~~i~e~a~~mKna~Fg~if~GlGlt~S~gk~rN~e~a~~Lv~~LNe~ak~tli~mrgH~Nv~GFnqv~~~e~GYpf~vd 311 (429)
T COG1029 232 IEEIEELADMMKNAKFGAIFVGLGLTSSRGKHRNVENAINLVKDLNEYAKFTLIPMRGHYNVTGFNEVLSWETGYPFAVD 311 (429)
T ss_pred HHHHHHHHHHHhcCCcceEEEeeceeecccccccHHHHHHHHHHHhhhceEEEEEeccccccccccchhhhhhCCceeee
Confidence 45788999999999999999999987651 2334444555444433321 11111 1
Q ss_pred CCCCCCCccceecCCCCCHHHHHHh--hcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcc
Q 009060 276 VPEHHPHFIGTYWGAVSSSFCGEIV--ESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRV 338 (545)
Q Consensus 276 ~~~~hpl~~G~~~G~~~~~~~~~~l--~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~ 338 (545)
|...+|.|- . |.-.+.++| .++|..|++|+++.......-...+...++|+||+-+.
T Consensus 312 F~rG~pryn---P---gE~s~vdlL~~k~vDAalvi~sDp~ah~P~~~~~~l~eIPvI~iDp~~~ 370 (429)
T COG1029 312 FSRGYPRYN---P---GEFSAVDLLKRKEVDAALVIASDPGAHFPRDAVEHLAEIPVICIDPHPT 370 (429)
T ss_pred cccCCcCCC---c---ccccHHHHHhccCCCeEEEEecCccccChHHHHHHhhcCCEEEecCCCC
Confidence 222333321 0 112456666 47899999999864332222122334567999988664
No 323
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=64.93 E-value=58 Score=30.38 Aligned_cols=87 Identities=11% Similarity=0.103 Sum_probs=46.1
Q ss_pred eEEEEcCCcchH---HHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEE-eCChh
Q 009060 91 GACVVTFTVGGL---SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAV-VNNLG 166 (545)
Q Consensus 91 gv~~~t~GpG~~---n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~-v~~~~ 166 (545)
..+++..|=|.+ ....++..|.....|+++|.=+......+. . + +....++.+ -|... ..+..
T Consensus 98 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~-------~---~--~~~~~~~a~-G~~~~~~vdG~ 164 (195)
T cd02007 98 RKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPN-------V---G--TPGNLFEEL-GFRYIGPVDGH 164 (195)
T ss_pred CeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCC-------C---C--CHHHHHHhc-CCCccceECCC
Confidence 344444566655 345777777777999999875533221110 0 0 233445543 22211 11232
Q ss_pred hHHHHHHHHHHHhhhCCCcEEEEeC
Q 009060 167 DAHELIDTAISTALKESKPVYISIS 191 (545)
Q Consensus 167 ~~~~~l~~A~~~a~~~~GPV~l~iP 191 (545)
+ .+.+.+|++.|+..++|+.|.+-
T Consensus 165 d-~~~l~~a~~~a~~~~~P~~I~~~ 188 (195)
T cd02007 165 N-IEALIKVLKEVKDLKGPVLLHVV 188 (195)
T ss_pred C-HHHHHHHHHHHHhCCCCEEEEEE
Confidence 3 23445666666666789998764
No 324
>PRK13936 phosphoheptose isomerase; Provisional
Probab=64.75 E-value=66 Score=30.03 Aligned_cols=101 Identities=14% Similarity=0.138 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHH--HHHhhh-----cCCCCeEEecCchhHH---HH-------HHhHH-hhhcC
Q 009060 28 TLGRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLI-----AEPELNLVGCCNELNA---GY-------AADGY-ARSRG 89 (545)
Q Consensus 28 ~~a~~i~~~L~~~GV~~vFg~pG~~~~~--l~~al~-----~~~~i~~i~~~hE~~A---~~-------~A~gy-ar~tg 89 (545)
..++.+++.+.+.+.=++||+-++.... +...+. ...+++.+....+... .. +...+ +....
T Consensus 31 ~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~ 110 (197)
T PRK13936 31 QAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTTDTSTLTAIANDYSYNEVFSKQVRALGQ 110 (197)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCCcHHHHHHHhhcCCHHHHHHHHHHHhCC
Confidence 4678889999999999999997775433 333343 1245666544222222 10 11111 11112
Q ss_pred c-eEEEEcCCcc-hHHHHHHHHHhHhcCCcEEEEeCCCCCc
Q 009060 90 V-GACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSN 128 (545)
Q Consensus 90 ~-gv~~~t~GpG-~~n~~~~l~~A~~~~~Pllvi~g~~~~~ 128 (545)
+ =+++.-|..| ..+.+..+..|...+.|+|.||+.....
T Consensus 111 ~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~ 151 (197)
T PRK13936 111 PGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGK 151 (197)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 2 2333334444 4568888999999999999999975443
No 325
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=62.53 E-value=7.5 Score=33.58 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCC
Q 009060 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSG 272 (545)
Q Consensus 222 ~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~ 272 (545)
++.-.+..+.+-+.+-|+|++-.|.. -.+++.++|++.++|++.|...
T Consensus 67 ~~~r~~~l~~l~~~~~P~iIvt~~~~---~p~~l~e~a~~~~ipll~t~~~ 114 (127)
T PF02603_consen 67 EEERKERLEKLFSYNPPCIIVTRGLE---PPPELIELAEKYNIPLLRTPLS 114 (127)
T ss_dssp HHHHCCHHHHHCTTT-S-EEEETTT------HHHHHHHHHCT--EEEESS-
T ss_pred HHHHHHHHHHHhCCCCCEEEEECcCC---CCHHHHHHHHHhCCcEEEcCCc
Confidence 33445566777778999999988763 6789999999999999998763
No 326
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=61.60 E-value=50 Score=29.90 Aligned_cols=96 Identities=9% Similarity=0.062 Sum_probs=63.9
Q ss_pred CCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCC
Q 009060 429 NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY 507 (545)
Q Consensus 429 ~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDG-sf~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~~~~~ 507 (545)
..+++....-. .+..+|-|.+.+. +|+.++++-=| ++.-.+..|..+...++|+++|.-.-..+...+
T Consensus 39 ~i~~i~~~~E~---~A~~~A~g~ar~~-g~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~------- 107 (172)
T PF02776_consen 39 GIRFIPVRHEQ---GAAFMADGYARAT-GRPGVVIVTSGPGATNALTGLANAYADRIPVLVITGQRPSAGEGR------- 107 (172)
T ss_dssp TSEEEE-SSHH---HHHHHHHHHHHHH-SSEEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEESSGGGTTT-------
T ss_pred ceeeecccCcc---hhHHHHHHHHHhh-ccceEEEeecccchHHHHHHHhhcccceeeEEEEecccchhhhcc-------
Confidence 34455544333 2446777777765 67777765444 667778999999999999999988777666521
Q ss_pred CCCC-CCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 508 NVIK-NWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 508 ~~l~-~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
..++ ..|...+.+.+.- +.+++.+.+++
T Consensus 108 ~~~q~~~d~~~~~~~~~k-----~~~~v~~~~~~ 136 (172)
T PF02776_consen 108 GAFQQEIDQQSLFRPVTK-----WSYRVTSPDDL 136 (172)
T ss_dssp TSTTSSTHHHHHHGGGSS-----EEEEECSGGGH
T ss_pred cccccchhhcchhccccc-----hhcccCCHHHH
Confidence 1122 4588888888874 57788887765
No 327
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=60.62 E-value=9.6 Score=39.01 Aligned_cols=101 Identities=17% Similarity=0.219 Sum_probs=65.3
Q ss_pred HHHHHHHhCCceEeCCC--CccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEE
Q 009060 255 FIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAII 332 (545)
Q Consensus 255 l~~lae~~~~Pv~tt~~--~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~ 332 (545)
+.--+.+.++|++-... -.|-+|+.+....- +-.+.++.++++|.||.+.+.|.+..+++..+ ...+++.
T Consensus 296 imy~cvk~~VPfVLAGSIRDDGPLPdvitDv~~------AQ~amR~~~~~a~~vimlaTmLHSIAtGNm~P--s~v~~~c 367 (407)
T TIGR00300 296 VMYECVKNNIPYVLAGSIRDDGPLPDVITDVVR------AQSKMRELLQGADMVLMLSTMLHSIAVGNLLP--SGVKTIC 367 (407)
T ss_pred hHHHHHhCCCCEEEeeeccCCCCCCcchhhHHH------HHHHHHHHhccCCeehhHHHHHHHHhhccccc--ccceEEE
Confidence 44557788999986432 33444444332211 12345667889999999999998887776542 3458999
Q ss_pred EcCCcceecC---CCcc---cc-ccHHHHHHHHHHHhc
Q 009060 333 VQPHRVTVGN---GPSL---GW-VFMADFLSALAKKLR 363 (545)
Q Consensus 333 id~d~~~~~~---~~~~---~~-~d~~~~l~~L~~~l~ 363 (545)
||++|....+ +-.. +- -|+.+|+..|...+.
T Consensus 368 VDInp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~l~ 405 (407)
T TIGR00300 368 VDINPAVVTKLSDRGSSQAVGVVTDVGLFLPLLVRQIK 405 (407)
T ss_pred EECCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHh
Confidence 9999976531 1011 11 188999999987764
No 328
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=60.54 E-value=14 Score=30.46 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=26.4
Q ss_pred CCEEEcCccccccchHHHHHHHHHHhCCceE
Q 009060 237 KPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (545)
Q Consensus 237 rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~ 267 (545)
|.++++|.|+.++-..+.++++++..|+++-
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~ 32 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLE 32 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 3578899997777788999999999999974
No 329
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=59.99 E-value=2.3e+02 Score=33.00 Aligned_cols=174 Identities=16% Similarity=0.065 Sum_probs=90.4
Q ss_pred EEecCchhHHHH--HHhHHhhhc-Cc--eEEEEcCCc-chHHHHHHHHH-hHhcCCcEEEEeCCCCCcccCCCccccccc
Q 009060 68 LVGCCNELNAGY--AADGYARSR-GV--GACVVTFTV-GGLSVLNAIAG-AYSENLPVICIVGGPNSNDYGTNRILHHTI 140 (545)
Q Consensus 68 ~i~~~hE~~A~~--~A~gyar~t-g~--gv~~~t~Gp-G~~n~~~~l~~-A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~ 140 (545)
+-....|+++.. +|.|.+..+ |. -.+.+|..+ |+.-+.-=+-. +-+...++++.+-......-+-| ..|+
T Consensus 568 ~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG-~qHq-- 644 (891)
T PRK09405 568 LQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEG-LQHE-- 644 (891)
T ss_pred EEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHhcCCCeEEEEECccccCCCCc-ccCC--
Confidence 445789999888 888877765 32 333344443 33333332222 33445566655544333322222 2232
Q ss_pred CCCChHHHHHHhhhce-eEEEEeCChhhHHHHHHHHHHHhhhCCC--cEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCC
Q 009060 141 GLPDFTQELRCFQAIT-CSQAVVNNLGDAHELIDTAISTALKESK--PVYISISCNLPGIPHPTFARDPVPFFLAPKVSN 217 (545)
Q Consensus 141 ~~~~~~d~~~~~~~~~-k~~~~v~~~~~~~~~l~~A~~~a~~~~G--PV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~ 217 (545)
+..+ +.+++.+- .-++.+.++.++..+++.+++.+....+ |+||.+. +. +...+. .+- .
T Consensus 645 ---dg~s-~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl~-ne-----~~~~~~-~pe-----~-- 706 (891)
T PRK09405 645 ---DGHS-HILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVM-NE-----NYHQPA-MPE-----G-- 706 (891)
T ss_pred ---chhh-HHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEeC-CC-----CCCCCC-CCc-----c--
Confidence 2223 33677653 4557778888888899999886664344 7889886 11 110000 000 0
Q ss_pred chhhHHHHHHHHHHHHhcC----C-CEEEcCccccccchHHHHHHHHHHhCCc
Q 009060 218 QLGLEAAVEATADFLNKAV----K-PVLVGGPNIRVAKAQKAFIELADATGYP 265 (545)
Q Consensus 218 ~~~~~~~i~~~~~~l~~a~----r-pvi~~G~g~~~~~a~~~l~~lae~~~~P 265 (545)
.+..+-+....|++.+ + -+.|+|.|..-.++.++-..|++..|+-
T Consensus 707 ---~~~~igKg~y~Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~ 756 (891)
T PRK09405 707 ---AEEGILKGMYKLETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVA 756 (891)
T ss_pred ---cccccceEEEEeccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCC
Confidence 0001111111233322 1 3777788877667777777787756654
No 330
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=59.84 E-value=15 Score=42.04 Aligned_cols=113 Identities=19% Similarity=0.101 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHhc--CCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCC--CCCccceecCCCCCHHH
Q 009060 221 LEAAVEATADFLNKA--VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEH--HPHFIGTYWGAVSSSFC 296 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a--~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~--hpl~~G~~~G~~~~~~~ 296 (545)
-+++++.+++.|++. ++..++.++.. ..++.-....|++.+|.+-+.+...-..-+.. ....+|.. .++...
T Consensus 118 WdEAl~~IA~kL~~~~p~~i~~y~sg~~-s~e~~~~~~~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~~---~~t~~~ 193 (743)
T TIGR01701 118 WDDAYQEIAAKLNSLDPKQVAFYTSGRT-SNEAAYLYQLFARSLGSNNLPDCSNMCHEPSSVALKRSIGIG---KGSVNL 193 (743)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecCCc-chHHHHHHHHHHHHhCCCCcCCCcccccchhhHHHHHhcCCC---CCCCCH
Confidence 577888888888875 44455554332 22334456788888887755322111100000 01112221 111112
Q ss_pred HHHhhcCCEEEEeCCCCCCCccccccc----CCCCCcEEEEcCCcc
Q 009060 297 GEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRV 338 (545)
Q Consensus 297 ~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~~ 338 (545)
+-+.++|+||++|....+.....+.. .-++.|+|.||+..+
T Consensus 194 -~Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~ 238 (743)
T TIGR01701 194 -EDFEHTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRE 238 (743)
T ss_pred -hHHHhCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 23578999999998864332211111 114679999998554
No 331
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=59.67 E-value=16 Score=39.69 Aligned_cols=115 Identities=19% Similarity=0.173 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHhc------CCCEEEcCccccccchHHHHHHHHHHhCC-ceEeCCCCccCCCCC--CCCccceecCCC
Q 009060 221 LEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADATGY-PIAIMPSGKGLVPEH--HPHFIGTYWGAV 291 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a------~rpvi~~G~g~~~~~a~~~l~~lae~~~~-Pv~tt~~~kg~~~~~--hpl~~G~~~G~~ 291 (545)
-+++++.+++.|++. ++..++.|.+... +....+.+|++..+. +.+.........+.. +...+|. +..
T Consensus 71 WdeAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~~-e~~~~~~~~~~~~g~s~~~~~~~~~c~~~~~~~~~~~~G~--~~~ 147 (512)
T cd02753 71 WDEALSLVASRLKEIKDKYGPDAIAFFGSAKCTN-EENYLFQKLARAVGGTNNVDHCARLCHSPTVAGLAETLGS--GAM 147 (512)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCc-HHHHHHHHHHHHhcCCCccCCCcccccchhhHHHHhhcCC--CCC
Confidence 567888888888753 4566666654432 334567788887765 333221110000000 0111121 111
Q ss_pred CCHHHHHHhhcCCEEEEeCCCCCCCccccccc----CCCCCcEEEEcCCccee
Q 009060 292 SSSFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVTV 340 (545)
Q Consensus 292 ~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~~~~ 340 (545)
+. . ..-+.++|+||++|+.+.+.....+.. .-++.++|.||+.....
T Consensus 148 ~~-~-~~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~t 198 (512)
T cd02753 148 TN-S-IADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTEL 198 (512)
T ss_pred CC-C-HHHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccc
Confidence 11 1 233579999999998863322211111 12467899999876544
No 332
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=59.51 E-value=34 Score=30.05 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=35.9
Q ss_pred hHHHHHHhhhhcCCCeEEEEE-cchhhcccHHHHHHHHHhCCCeEEEEEeCCch
Q 009060 444 SVGATLGYAQAAKDKRVIACI-GDGSFQVTAQEISTMIRCGQRSIIFLINNGGY 496 (545)
Q Consensus 444 ~l~aAiGaala~p~r~vv~i~-GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~~ 496 (545)
+..+|.|++.+.. ++++.++ |.|. ......|.++...++|+++++-..+..
T Consensus 47 a~~~A~G~a~~~~-~~v~~~~~gpg~-~~~~~~l~~a~~~~~Pvl~i~~~~~~~ 98 (154)
T cd06586 47 AAGAAAGYARAGG-PPVVIVTSGTGL-LNAINGLADAAAEHLPVVFLIGARGIS 98 (154)
T ss_pred HHHHHHHHHHhhC-CEEEEEcCCCcH-HHHHHHHHHHHhcCCCEEEEeCCCChh
Confidence 5677888888754 5555666 6665 456677888999999988777554433
No 333
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=59.17 E-value=7.4 Score=37.06 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=31.7
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCcccccccCC--CCCcEEEEcCCccee
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLLI--KKEKAIIVQPHRVTV 340 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~--~~~~~i~id~d~~~~ 340 (545)
.+.+.+.++|++|++|+++.-.....+.... ++.++|.|+.++...
T Consensus 160 ~a~~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~ 207 (218)
T cd01407 160 EAAEALAKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEPTPA 207 (218)
T ss_pred HHHHHHhcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCCCCCC
Confidence 3455667899999999998655433332222 367899999988754
No 334
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=58.90 E-value=25 Score=39.81 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHHhc--CCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHH
Q 009060 220 GLEAAVEATADFLNKA--VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCG 297 (545)
Q Consensus 220 ~~~~~i~~~~~~l~~a--~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~ 297 (545)
..+++++.+++.|++. ++..+++|..... +..-.+++|++.+|.+.+.+...-..+. +...+.| .++. ..
T Consensus 288 SWdEAl~~iA~kL~~~~~~~ia~i~g~~~~~-E~~~~lkkl~~~lGs~nid~~~~~~~~~---~~~~~~~--~~~~-si- 359 (687)
T PRK09130 288 SWDEAFAAIAAKIKGTPGEKIAAIAGDLADV-ESMFALKDLMQKLGSSNLDCRQDGAKLD---PSLRASY--LFNT-TI- 359 (687)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCCCCH-HHHHHHHHHHHHcCCCccccccchhhhh---hhhhccC--CCCC-CH-
Confidence 3577788888888875 4567777765533 4566889999999988876532110011 1011111 1111 12
Q ss_pred HHhhcCCEEEEeCCCCCCCcccccc----cCCCC-CcEEEEcCCc
Q 009060 298 EIVESADAYVFVGPIFNDYSSVGYS----LLIKK-EKAIIVQPHR 337 (545)
Q Consensus 298 ~~l~~aD~vl~lG~~~~~~~~~~~~----~~~~~-~~~i~id~d~ 337 (545)
+-+.++|+||++|+.+.+....-+. .+.++ .+++.||+..
T Consensus 360 ~dIe~AD~IlliG~Np~~eaPvl~~rirka~~~g~~kIivIdpr~ 404 (687)
T PRK09130 360 AGIEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQA 404 (687)
T ss_pred HHHHhCCEEEEEccCcccccHHHHHHHHHHHHcCCCeEEEEcCcc
Confidence 2258999999999986433221111 11233 4899988754
No 335
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=56.88 E-value=1.1e+02 Score=27.25 Aligned_cols=98 Identities=19% Similarity=0.138 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHh--h----h-cCCCCeEEecC---chhHHHH----HHhHHhh---hc-C-ce
Q 009060 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDH--L----I-AEPELNLVGCC---NELNAGY----AADGYAR---SR-G-VG 91 (545)
Q Consensus 31 ~~i~~~L~~~GV~~vFg~pG~~~~~l~~a--l----~-~~~~i~~i~~~---hE~~A~~----~A~gyar---~t-g-~g 91 (545)
+.+++.|.+.+.=++||+-++......-+ + . ...++..+... |+..+.. ...=|.+ .. . --
T Consensus 2 ~~~~~~l~~a~rI~~~G~G~S~~~A~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 81 (154)
T TIGR00441 2 VLLADSFKAGGKVLICGNGGSACDAQHFAAELTGRYRENRPGLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQKGD 81 (154)
T ss_pred hHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhhcccccCCCCceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCCCC
Confidence 56889999999999999977764332221 1 1 12355544422 2222221 1111222 11 2 34
Q ss_pred EEEEcCCcchH-HHHHHHHHhHhcCCcEEEEeCCCCCc
Q 009060 92 ACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSN 128 (545)
Q Consensus 92 v~~~t~GpG~~-n~~~~l~~A~~~~~Pllvi~g~~~~~ 128 (545)
++++.|.+|-+ +.+..+..|...++|++.||+.....
T Consensus 82 ~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~ 119 (154)
T TIGR00441 82 VLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGK 119 (154)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 56666677744 56677888999999999999865443
No 336
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=56.85 E-value=9 Score=41.57 Aligned_cols=115 Identities=15% Similarity=0.007 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHhcC------CCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCH
Q 009060 221 LEAAVEATADFLNKAV------KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSS 294 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~------rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~ 294 (545)
-+++++.+++.|++.+ ...++.+.+.........+..|...+|.+-+......+..-.-+...+|. ...
T Consensus 75 WdeAl~~ia~~l~~i~~~~G~~si~~~~~~g~~~~~~~~~~~~~~~~~Gs~~~~~~~c~~~~~~~~~~~~G~----~~~- 149 (501)
T cd02766 75 WDEALDTIAAKLKEIKAEYGPESILPYSYAGTMGLLQRAARGRFFHALGASELRGTICSGAGIEAQKYDFGA----SLG- 149 (501)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcEEEEecccCCccccchHHHHHHHHhCCCCCCCCCccHHHHHHHHHhhcCC----CCC-
Confidence 5678888888887643 33444444432211222236788877776542111000000000111221 111
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCcccccccC----CCCCcEEEEcCCccee
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL----IKKEKAIIVQPHRVTV 340 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~----~~~~~~i~id~d~~~~ 340 (545)
...+-+.++|+||++|+...+.....+..+ .++.|+|.||+.....
T Consensus 150 ~~~~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~t 199 (501)
T cd02766 150 NDPEDMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTAT 199 (501)
T ss_pred CCHHHHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCcc
Confidence 112346899999999988643322212111 2467999999877644
No 337
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=56.34 E-value=33 Score=38.02 Aligned_cols=58 Identities=26% Similarity=0.347 Sum_probs=42.0
Q ss_pred CccccchhHHHHHHhhh-----------hcCCCeEEEEEcchhhcc--cHHHHHHHHHhCCCeEEEEEeCC
Q 009060 437 QYGSIGWSVGATLGYAQ-----------AAKDKRVIACIGDGSFQV--TAQEISTMIRCGQRSIIFLINNG 494 (545)
Q Consensus 437 ~~g~mG~~l~aAiGaal-----------a~p~r~vv~i~GDGsf~~--~~~eL~ta~~~~lpi~ivV~NN~ 494 (545)
..++||-|.-.||=.+. ..++++|+|+.|||-+== +...|..+.+++|.=+|+|+|=+
T Consensus 190 pTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincN 260 (887)
T COG2609 190 PTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCN 260 (887)
T ss_pred CcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecc
Confidence 34678877777765442 246789999999997532 34557788999998888888744
No 338
>PRK09939 putative oxidoreductase; Provisional
Probab=56.03 E-value=10 Score=43.25 Aligned_cols=115 Identities=16% Similarity=0.101 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHhcCCC--EEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCC--CCCCccceecCCCCCHH
Q 009060 220 GLEAAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPE--HHPHFIGTYWGAVSSSF 295 (545)
Q Consensus 220 ~~~~~i~~~~~~l~~a~rp--vi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~--~hpl~~G~~~G~~~~~~ 295 (545)
..+++++.+++.|++.+.| +.+.++|-...++.-.+..|++.+|-+-+.+......-+. .....+|. |. ++..
T Consensus 126 SWdEAl~~Ia~~L~~i~~p~~i~~y~sg~~snE~~yl~q~f~r~~Gtnn~~~~s~~C~~~~~~~l~~~~G~--g~-~t~~ 202 (759)
T PRK09939 126 SWQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAAFLYQLFAREYGSNNFPDCSNMCHEPTSVGLAASIGV--GK-GTVL 202 (759)
T ss_pred cHHHHHHHHHHHHHhhcCCCeEEEEeeCCchHHHHHHHHHHHHHhCCcccCCCCCCCchHHHHHHHHhcCC--CC-CCCC
Confidence 3577888888888876555 3333333222234446678888888776532211000000 00011222 11 1112
Q ss_pred HHHHhhcCCEEEEeCCCCCCCcccccc---c-CCCCCcEEEEcCCcc
Q 009060 296 CGEIVESADAYVFVGPIFNDYSSVGYS---L-LIKKEKAIIVQPHRV 338 (545)
Q Consensus 296 ~~~~l~~aD~vl~lG~~~~~~~~~~~~---~-~~~~~~~i~id~d~~ 338 (545)
..+ +.+||+||++|+...+.....+. . .-++.|+|.||+-.+
T Consensus 203 l~D-i~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~ 248 (759)
T PRK09939 203 LED-FEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQE 248 (759)
T ss_pred HHH-HhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 223 58999999999886432211111 1 124679999998553
No 339
>PRK13937 phosphoheptose isomerase; Provisional
Probab=55.96 E-value=93 Score=28.71 Aligned_cols=102 Identities=18% Similarity=0.180 Sum_probs=59.9
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHH--HHHhhh-----cCCCCeEEecC-chhHHHHHH--hHH---------hhh
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLI-----AEPELNLVGCC-NELNAGYAA--DGY---------ARS 87 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~--l~~al~-----~~~~i~~i~~~-hE~~A~~~A--~gy---------ar~ 87 (545)
...++.+++.|++.+-=++||+-++.... +...+. ...++..+... +.......+ .|| +.+
T Consensus 25 ~~aa~~i~~~l~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (188)
T PRK13937 25 AKVAEALIEALANGGKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIGNDYGFERVFSRQVEALG 104 (188)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHhccCCHHHHHHHHHHhhC
Confidence 35688999999999999999996655432 211121 12456666432 222211111 011 122
Q ss_pred cCceEEEEcCCcc-hHHHHHHHHHhHhcCCcEEEEeCCCCCc
Q 009060 88 RGVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSN 128 (545)
Q Consensus 88 tg~gv~~~t~GpG-~~n~~~~l~~A~~~~~Pllvi~g~~~~~ 128 (545)
+.--++++.|.+| ..+.+.++..|...++|+|.||+...+.
T Consensus 105 ~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~ 146 (188)
T PRK13937 105 RPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGK 146 (188)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 2223444455555 4567788888999999999999975544
No 340
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=55.70 E-value=19 Score=37.10 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=42.3
Q ss_pred hHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCC
Q 009060 444 SVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNG 494 (545)
Q Consensus 444 ~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~ 494 (545)
++.+++||+++ +.+++..+-|.+|.+-...|..+.-..+|+++++.+=.
T Consensus 60 A~~~a~GAs~a--G~Ra~taTSg~Gl~lm~E~l~~a~~~e~P~v~v~v~R~ 108 (352)
T PRK07119 60 AINMVYGAAAT--GKRVMTSSSSPGISLKQEGISYLAGAELPCVIVNIMRG 108 (352)
T ss_pred HHHHHHHHHhh--CCCEEeecCcchHHHHHHHHHHHHHccCCEEEEEeccC
Confidence 67899999887 67899999999999888889999999999998888743
No 341
>PRK13761 hypothetical protein; Provisional
Probab=55.23 E-value=26 Score=33.14 Aligned_cols=48 Identities=27% Similarity=0.250 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeC
Q 009060 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (545)
...+++.++.+|.-|++|||=+-+.+. +-+.+++.+|++.+|+++=..
T Consensus 53 A~~A~raAaA~LLlA~~PVISVNGN~A-AL~p~eiveLa~~~~A~iEVN 100 (248)
T PRK13761 53 ALEAERAAAALLLLAKHPVISVNGNTA-ALVPEEIVELAEALNAKLEVN 100 (248)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEcchHH-hhChHHHHHHHHHhCCCEEEE
Confidence 456778888899999999998765443 246799999999999998543
No 342
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=55.00 E-value=12 Score=29.71 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=26.2
Q ss_pred CCEEEcCccccccchH-HHHHHHHHHhCCceEe
Q 009060 237 KPVLVGGPNIRVAKAQ-KAFIELADATGYPIAI 268 (545)
Q Consensus 237 rpvi~~G~g~~~~~a~-~~l~~lae~~~~Pv~t 268 (545)
|.++++|.|...+-.. ..+++.+++.|+.+..
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~ 33 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEV 33 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEE
Confidence 3578999999877655 8999999999977754
No 343
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=54.97 E-value=52 Score=26.75 Aligned_cols=77 Identities=19% Similarity=0.196 Sum_probs=47.3
Q ss_pred EEEcCcccccc-chHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCc
Q 009060 239 VLVGGPNIRVA-KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYS 317 (545)
Q Consensus 239 vi~~G~g~~~~-~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~ 317 (545)
++-+|.|...+ -+.+.|++.+++.|+.+-....+.. |+. .. ...+.+.++|+||++|....+..
T Consensus 4 i~ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~----------g~~-~~----l~~~~i~~Ad~vi~~~~~~~~~~ 68 (96)
T cd05569 4 VTACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSL----------GIE-NE----LTAEDIAEADAVILAADVPVDDE 68 (96)
T ss_pred EEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCc----------Ccc-Cc----CCHHHHhhCCEEEEecCCCCchh
Confidence 34567776654 3678999999999999876555432 110 11 11245689999999997643221
Q ss_pred ccccccCCCCCcEEEEcCC
Q 009060 318 SVGYSLLIKKEKAIIVQPH 336 (545)
Q Consensus 318 ~~~~~~~~~~~~~i~id~d 336 (545)
.| .+.++++++.+
T Consensus 69 -----rf-~gk~v~~~~~~ 81 (96)
T cd05569 69 -----RF-AGKRVYEVSVA 81 (96)
T ss_pred -----hh-CCCeEEEecHH
Confidence 12 34467666554
No 344
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=54.93 E-value=2.3e+02 Score=30.27 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=27.7
Q ss_pred HHHHHHHHhc-CCCEEEcCccccccchHHHHHHHHHHhCCceEeCCC
Q 009060 226 EATADFLNKA-VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS 271 (545)
Q Consensus 226 ~~~~~~l~~a-~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~ 271 (545)
+.+++..++. +||++..-.|. ...++.+++.++.|+|++.++.
T Consensus 391 ~~l~~~~~~~~~KPvv~~~~gg---~~~~~~~~~L~~~Gip~f~~p~ 434 (447)
T TIGR02717 391 KGIIEGAKKSNEKPVVAGFMGG---KSVDPAKRILEENGIPNYTFPE 434 (447)
T ss_pred HHHHHHHHhcCCCcEEEEecCC---ccHHHHHHHHHhCCCCccCCHH
Confidence 4455556665 88997765432 1345667766778999987653
No 345
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=54.67 E-value=23 Score=35.81 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeC
Q 009060 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (545)
--..|.+++.++.+..+.++++-..--|++|.++|..++|++|+||+.-
T Consensus 152 KTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~ 200 (340)
T COG0552 152 KTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG 200 (340)
T ss_pred hHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc
Confidence 3456888888888777767776667778899999999999999999974
No 346
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=53.54 E-value=28 Score=31.23 Aligned_cols=55 Identities=20% Similarity=0.168 Sum_probs=41.8
Q ss_pred chhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHH-HhCCCeEEEEEeCCchhh
Q 009060 442 GWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMI-RCGQRSIIFLINNGGYTI 498 (545)
Q Consensus 442 G~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~-~~~lpi~ivV~NN~~~g~ 498 (545)
+.+.+.|-|+.++ ..++++++.+=| +...++.|.++. .+++|+++|+-.-+.++-
T Consensus 44 e~aa~~aAg~~~~-~~~~~v~~~~sG-~gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~ 99 (157)
T TIGR03845 44 EEGVGICAGAYLA-GKKPAILMQSSG-LGNSINALASLNKTYGIPLPILASWRGVYKE 99 (157)
T ss_pred HHHHHHHHHHHHh-cCCcEEEEeCCc-HHHHHHHHHHHHHcCCCCEEEEEeccCCCCC
Confidence 4466677777766 567888888777 667799999999 999999999966555443
No 347
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=53.43 E-value=76 Score=33.19 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCccccc----cchHHHHHHHHHHhC
Q 009060 222 EAAVEATADFLNKAVKPVLVGGPNIRV----AKAQKAFIELADATG 263 (545)
Q Consensus 222 ~~~i~~~~~~l~~a~rpvi~~G~g~~~----~~a~~~l~~lae~~~ 263 (545)
.+.+++++++|.++++++|+.|.|... ......+..++..++
T Consensus 222 ~~~i~~lA~~l~~a~~~~i~~g~g~~~~~~~~~~~~~~~~li~~l~ 267 (415)
T cd02761 222 AETILELAERLKNAKFGVIFWGLGLLPSRGAHRNIEAAIRLVKALN 267 (415)
T ss_pred HHHHHHHHHHHHhCCceEEEEeccccccCCccHHHHHHHHHHHHhC
Confidence 567899999999999999999988863 234456666666665
No 348
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=53.17 E-value=40 Score=35.13 Aligned_cols=76 Identities=8% Similarity=0.107 Sum_probs=45.9
Q ss_pred HHHHHHHHHHh--cCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh-
Q 009060 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (545)
Q Consensus 224 ~i~~~~~~l~~--a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l- 300 (545)
.++++.+.+.+ .||++|+.|......+..+.+.+..++.++.+.. +. ++- .+|-.-.+ ..+.+.+
T Consensus 18 ~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~-f~--~v~--~np~~~~v-------~~~~~~~~ 85 (383)
T PRK09860 18 SLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVI-YD--GTQ--PNPTTENV-------AAGLKLLK 85 (383)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEE-eC--CCC--CCcCHHHH-------HHHHHHHH
Confidence 34555555554 5889999888776667778888888888876521 11 111 13332211 1222222
Q ss_pred -hcCCEEEEeCC
Q 009060 301 -ESADAYVFVGP 311 (545)
Q Consensus 301 -~~aD~vl~lG~ 311 (545)
.++|+||.||.
T Consensus 86 ~~~~D~IiaiGG 97 (383)
T PRK09860 86 ENNCDSVISLGG 97 (383)
T ss_pred HcCCCEEEEeCC
Confidence 47999999996
No 349
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=51.51 E-value=17 Score=42.86 Aligned_cols=115 Identities=13% Similarity=0.112 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHhcCC-----------------CEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCC--CC
Q 009060 221 LEAAVEATADFLNKAVK-----------------PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEH--HP 281 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~r-----------------pvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~--hp 281 (545)
-+++++.+++.|++.+. -+.+.+++....+..-.+.+|++.+|.+-+.....-...+.. ..
T Consensus 125 WDEAld~IA~kLk~i~~~~~~~~~~~G~~~~~~~sia~~~s~~~tnEe~yl~~kf~r~lGt~n~~~~~~~C~~~~~~al~ 204 (1009)
T TIGR01553 125 WDWAIDTIARRVKDTRDATFVTKDAKGQVVNRCDGIASVGSSAMDNEECWLYQKWLRSLGLFYIEHQARIUHSPTVASLA 204 (1009)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCccccccceEEEEecCCCCcHHHHHHHHHHHHhCCCcccCcccccccHHHHHHH
Confidence 46677888877765321 133334333222334456889998887654332111100000 01
Q ss_pred CccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCccccccc----CCCCCcEEEEcCCcce
Q 009060 282 HFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVT 339 (545)
Q Consensus 282 l~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~~~ 339 (545)
..+|. +.... .. .=+.++|+||++|+...+.....+.. .-++.|+|.||+....
T Consensus 205 ~~~G~--~~~~~-~~-~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~t~ 262 (1009)
T TIGR01553 205 PSFGR--GAMTN-NW-VDIKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRFNR 262 (1009)
T ss_pred HhhcC--CCCCC-CH-HHHHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCCCc
Confidence 11222 11111 11 22578999999998864332211111 1246799999986654
No 350
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=51.35 E-value=34 Score=39.37 Aligned_cols=115 Identities=14% Similarity=0.008 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHHhc------CCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCC
Q 009060 220 GLEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSS 293 (545)
Q Consensus 220 ~~~~~i~~~~~~l~~a------~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~ 293 (545)
+.+++++.+++.|++. +...++.|... ..+....+.+|++.+|.+.+.......... .-....|. +..+.
T Consensus 288 SWdeAl~~ia~~L~~i~~~~G~~~i~~~~s~~~-t~e~~~~~~~f~~~~Gt~n~~~~~~~~~~~-~~~~~~g~--~~~~~ 363 (776)
T PRK09129 288 DWETALEYVAEGLKGIIEDHGADQIGALASPHS-TLEELYLLQKLARGLGSGNIDHRLRQQDFR-DDAAAPGA--PWLGM 363 (776)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCC-CHHHHHHHHHHHHHhCCCccccccCCcccc-chhhhhcc--cccCC
Confidence 3566778888877753 33455555433 223456788999999987654321110000 00000111 11122
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCCccccccc----CCCCCcEEEEcCCccee
Q 009060 294 SFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVTV 340 (545)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~~~~ 340 (545)
. ..-+.++|+||++|+.+.+.....+.. ..++.|+|.||+-..+.
T Consensus 364 -~-~~Di~~ad~Il~~G~N~~~~~p~~~~~i~~a~~~G~klividpr~t~~ 412 (776)
T PRK09129 364 -P-IAELSNLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPVDDDF 412 (776)
T ss_pred -C-HHHHHhCCEEEEEecCcchhcHHHHHHHHHHHHCCCeEEEecCCcccc
Confidence 1 233578999999998864332211111 12456899999765543
No 351
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=51.25 E-value=22 Score=34.57 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=40.0
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCccccccc--CCCCCcEEEEcCCcceecCCCccc---cccHHHHHHHHHHHh
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGNGPSLG---WVFMADFLSALAKKL 362 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~---~~d~~~~l~~L~~~l 362 (545)
.+.+.+.++|++|++|+++--+.-..... ..++.++|.||.++..+. ..+. ..+...++..|.+.+
T Consensus 175 ~~~~~~~~~d~liviGTSl~V~Paa~~p~~~~~~g~~~i~iN~~~~~~~--~~~d~~i~~~a~~~~~~l~~~~ 245 (250)
T COG0846 175 EALEALKEADLLIVIGTSLKVYPAAGLPELAKRRGAKVIEINLEPTRLD--PIADEVIRGDAGEVLPLLLEEL 245 (250)
T ss_pred HHHHHhccCCEEEEECcceEEcChhhhhHHHHhcCCEEEEECCCcccCc--chhHHHHHhhHHHHHHHHHHHh
Confidence 44556689999999999975544433322 125678999998776553 2111 113455555555444
No 352
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=50.80 E-value=2.8e+02 Score=30.60 Aligned_cols=109 Identities=15% Similarity=0.018 Sum_probs=67.9
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCC--------CcccccccCCCChH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGT--------NRILHHTIGLPDFT 146 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~--------~~~~~~~~~~~~~~ 146 (545)
+.-+|.|.+.+.. +.+|++--| |+.=...-|..|...++|++++.-+......-+ +......+. ...
T Consensus 423 glpaaiGa~lA~p~~~Vv~i~GDG-~f~m~~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~--~~~ 499 (566)
T PRK07282 423 GIPAAIGAKIANPDKEVILFVGDG-GFQMTNQELAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGRTSESVFD--TLP 499 (566)
T ss_pred hhhHhheeheecCCCcEEEEEcch-hhhccHHHHHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCCcccccCC--CCC
Confidence 4456778766653 455554333 333334688999999999999987755332100 000000010 113
Q ss_pred HHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 147 QELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 147 d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
|...+.+.+-.+..++++++++.+.++ ++ ...+|+.|++..|
T Consensus 500 d~~~lA~a~G~~~~~v~~~~el~~al~-~~----~~~~p~lIeV~v~ 541 (566)
T PRK07282 500 DFQLMAQAYGIKHYKFDNPETLAQDLE-VI----TEDVPMLIEVDIS 541 (566)
T ss_pred CHHHHHHHCCCEEEEECCHHHHHHHHH-Hh----cCCCCEEEEEEeC
Confidence 567788888788899999988877664 32 2378999999887
No 353
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=50.67 E-value=74 Score=32.63 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCcccccc----chHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHH
Q 009060 222 EAAVEATADFLNKAVKPVLVGGPNIRVA----KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCG 297 (545)
Q Consensus 222 ~~~i~~~~~~l~~a~rpvi~~G~g~~~~----~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~ 297 (545)
.+.++++++++.++++++++.|.+..+. .....+..|+..+|.- ...|.+.+...+|++.-. ......
T Consensus 230 ~~~i~~la~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~l~~l~G~~---~~~g~~~~~~~np~~~~~-----~~~~~~ 301 (374)
T cd00368 230 AETIRALAREFAAAKRAVILWGMGLTQHTNGTQNVRAIANLAALTGNI---GRPGGGLGPGGNPLVSAP-----DANRVR 301 (374)
T ss_pred HHHHHHHHHHHHhCCCeEEEeccccceecccHHHHHHHHHHHHHhCCC---CCCCCcCCCCCChhhcCC-----CHHHHH
Confidence 4568889999999999999999888542 2334444555544431 112333444445543211 122445
Q ss_pred HHhhcCCEEEEeCCCCCCC
Q 009060 298 EIVESADAYVFVGPIFNDY 316 (545)
Q Consensus 298 ~~l~~aD~vl~lG~~~~~~ 316 (545)
+++++.|+++++....++.
T Consensus 302 ~al~~~~~~V~~d~~~~et 320 (374)
T cd00368 302 AALKKLDFVVVIDIFMTET 320 (374)
T ss_pred HHHhCCCeEEEEecCCCcc
Confidence 6788999999998776543
No 354
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=50.64 E-value=19 Score=34.68 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=33.7
Q ss_pred hHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCC
Q 009060 444 SVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNG 494 (545)
Q Consensus 444 ~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~ 494 (545)
++.+++||+++ +.+++..+-=.||.+-.--|.++.-.++|++++|.|-.
T Consensus 48 A~~~~~GAs~a--G~ra~t~ts~~Gl~lm~e~l~~a~~~~~P~V~~~~~R~ 96 (230)
T PF01855_consen 48 AMEAAIGASAA--GARAMTATSGPGLNLMAEPLYWAAGTELPIVIVVVQRA 96 (230)
T ss_dssp HHHHHHHHHHT--T--EEEEEECCHHHHHCCCHHHHHHTT--EEEEEEEB-
T ss_pred HHHHHHHHHhc--CCceEEeecCCcccccHhHHHHHHHcCCCEEEEEEECC
Confidence 67888998887 56677766666666655668888999999999988744
No 355
>PRK13938 phosphoheptose isomerase; Provisional
Probab=49.49 E-value=1.1e+02 Score=28.65 Aligned_cols=101 Identities=18% Similarity=0.140 Sum_probs=60.1
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHH--hhh-----cCCCCeEEecCchhHHHHHHhH--------Hhhh---c
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLD--HLI-----AEPELNLVGCCNELNAGYAADG--------YARS---R 88 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~--al~-----~~~~i~~i~~~hE~~A~~~A~g--------yar~---t 88 (545)
...++.+++.|++.|-=++||+-++....... .|. ..+.+..+... ...+-..|.+ |++. .
T Consensus 32 ~~~a~~~~~~l~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~-~~~~~~~a~~nd~~~~~~~~~~~~~~ 110 (196)
T PRK13938 32 RAIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALH-ANSSHLTAVANDYDYDTVFARALEGS 110 (196)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEe-CChHHHHHhhccccHHHHHHHHHHhc
Confidence 35678888889999989999997776544332 232 11233333222 2222222221 1121 1
Q ss_pred -Cc-eEEEEcCCcc-hHHHHHHHHHhHhcCCcEEEEeCCCCCc
Q 009060 89 -GV-GACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSN 128 (545)
Q Consensus 89 -g~-gv~~~t~GpG-~~n~~~~l~~A~~~~~Pllvi~g~~~~~ 128 (545)
.+ -++++.|..| ..+.+.++..|...+.|+|.||+.....
T Consensus 111 ~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~ 153 (196)
T PRK13938 111 ARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQ 153 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 12 3444445555 5678899999999999999999976544
No 356
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=49.38 E-value=42 Score=33.22 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=51.9
Q ss_pred CCeEEEEEcchhhccc-HHHHHHHH-HhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCCHHHHHHHcCCCCCceeEEEE
Q 009060 457 DKRVIACIGDGSFQVT-AQEISTMI-RCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKV 534 (545)
Q Consensus 457 ~r~vv~i~GDGsf~~~-~~eL~ta~-~~~lpi~ivV~NN~~~g~~~~~~~~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v 534 (545)
-++||+|+=|-=-=.+ +.+|..|+ +.++| +.|++|-..... |-.|++-+++...+....||
T Consensus 146 A~kVIAIVMD~FTD~dIf~DLleAa~kR~Vp-VYiLLD~~~~~~----------------Fl~Mc~~~~v~~~~~~nmrV 208 (284)
T PF07894_consen 146 AQKVIAIVMDVFTDVDIFCDLLEAANKRGVP-VYILLDEQNLPH----------------FLEMCEKLGVNLQHLKNMRV 208 (284)
T ss_pred hcceeEEEeeccccHHHHHHHHHHHHhcCCc-EEEEechhcChH----------------HHHHHHHCCCChhhcCCeEE
Confidence 4689998876311111 45666676 77887 666777665543 88999999999888899999
Q ss_pred eeceeeEEee
Q 009060 535 SIYKMCVYVT 544 (545)
Q Consensus 535 ~~~~~~~~~~ 544 (545)
++..+.+|-+
T Consensus 209 Rsv~G~~y~~ 218 (284)
T PF07894_consen 209 RSVTGCTYYS 218 (284)
T ss_pred EEecCCeeec
Confidence 9999888753
No 357
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=48.74 E-value=64 Score=33.47 Aligned_cols=77 Identities=18% Similarity=0.191 Sum_probs=46.5
Q ss_pred HHHHHHHHHHh--cCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh-
Q 009060 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (545)
Q Consensus 224 ~i~~~~~~l~~--a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l- 300 (545)
.++++.+.+.+ .+|++|+.|......+..+.+.+..++.++.+.. +.+ -+.+|-.-.+ ..+.+.+
T Consensus 13 ~l~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~-~~~----v~~~p~~~~v-------~~~~~~~~ 80 (376)
T cd08193 13 SLARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTV-FDD----VEADPPEAVV-------EAAVEAAR 80 (376)
T ss_pred HHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEE-ECC----CCCCcCHHHH-------HHHHHHHH
Confidence 34555566654 5899999998776656778888888888876542 111 1234433222 1122222
Q ss_pred -hcCCEEEEeCCC
Q 009060 301 -ESADAYVFVGPI 312 (545)
Q Consensus 301 -~~aD~vl~lG~~ 312 (545)
.++|+||.||.-
T Consensus 81 ~~~~D~IIaiGGG 93 (376)
T cd08193 81 AAGADGVIGFGGG 93 (376)
T ss_pred hcCCCEEEEeCCc
Confidence 478999999954
No 358
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=48.26 E-value=71 Score=31.95 Aligned_cols=100 Identities=16% Similarity=0.046 Sum_probs=58.1
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCC--CC-----eEEecCch------------hH-HHHHHhHHhhh
Q 009060 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP--EL-----NLVGCCNE------------LN-AGYAADGYARS 87 (545)
Q Consensus 28 ~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~--~i-----~~i~~~hE------------~~-A~~~A~gyar~ 87 (545)
...+.+++.|++.|-=++||+=++......|+.+-.+ +. +.+..-.+ .. ++.........
T Consensus 45 ~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~~~~~~iaGg~~a~~~~~e~~Ed~~~~~~~dl~~~~l 124 (291)
T TIGR00274 45 AAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSPELVKGIIAGGECAILHAVEGAEDSTEAGANDLQNIHL 124 (291)
T ss_pred HHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcCCCHHHhhHHhcCChHHHhccchhhhcchHHHHHHHHhcCC
Confidence 4567788999988888888887777666777643211 11 11111111 11 11111221222
Q ss_pred c-C-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCc
Q 009060 88 R-G-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSN 128 (545)
Q Consensus 88 t-g-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~ 128 (545)
+ + ..+++..+| -..+.+.++..|...+.|++.||+...+.
T Consensus 125 ~~~DvvI~IS~SG-~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~ 166 (291)
T TIGR00274 125 TKNDVVVGIAASG-RTPYVIAGLQYARSLGALTISIACNPKSA 166 (291)
T ss_pred CCCCEEEEEeCCC-CcHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 2 3 455555555 24567788888999999999999865543
No 359
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=47.78 E-value=57 Score=33.86 Aligned_cols=76 Identities=17% Similarity=0.175 Sum_probs=46.1
Q ss_pred HHHHHHHHHHh--cCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh-
Q 009060 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (545)
Q Consensus 224 ~i~~~~~~l~~--a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l- 300 (545)
.++++.+.+++ .+|++|+.|.+....+..+.+.+..+..++.+.. +.+ + +.+|-.-.+ ..+.+.+
T Consensus 10 ~~~~l~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~-~~~---v-~~~p~~~~v-------~~~~~~~~ 77 (375)
T cd08194 10 AVDETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAI-FDD---V-VSEPTDESV-------EEGVKLAK 77 (375)
T ss_pred HHHHHHHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEE-ECC---C-CCCcCHHHH-------HHHHHHHH
Confidence 35555566653 5899999998877556777888888888876532 111 1 123332211 1122222
Q ss_pred -hcCCEEEEeCC
Q 009060 301 -ESADAYVFVGP 311 (545)
Q Consensus 301 -~~aD~vl~lG~ 311 (545)
.++|+||.||.
T Consensus 78 ~~~~D~IIaiGG 89 (375)
T cd08194 78 EGGCDVIIALGG 89 (375)
T ss_pred hcCCCEEEEeCC
Confidence 47899999996
No 360
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=47.50 E-value=38 Score=35.51 Aligned_cols=48 Identities=23% Similarity=0.251 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeC
Q 009060 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (545)
Q Consensus 222 ~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (545)
-....+.+..|.+-++-++++.....|+.|.++|+.|+++.++||+..
T Consensus 114 TTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~ 161 (451)
T COG0541 114 TTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS 161 (451)
T ss_pred HhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC
Confidence 345667788888766667777788888999999999999999999875
No 361
>PRK09330 cell division protein FtsZ; Validated
Probab=47.35 E-value=39 Score=35.14 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHhcCCCEEEcCcc-ccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCC----CHH
Q 009060 221 LEAAVEATADFLNKAVKPVLVGGPN-IRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVS----SSF 295 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~rpvi~~G~g-~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~----~~~ 295 (545)
..+..+++.+.|..+.-..|++|-| ...+++...+.++++..+++++.-.. .|... .|... ...
T Consensus 84 aee~~e~I~~~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt--------~PF~f---EG~~r~~nA~~g 152 (384)
T PRK09330 84 AEESREEIREALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVT--------KPFSF---EGKKRMKQAEEG 152 (384)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEe--------cCccc---cchhHHHHHHHH
Confidence 3455677778888899999998854 34467888999999999988765221 12111 11100 112
Q ss_pred HHHHhhcCCEEEEeC
Q 009060 296 CGEIVESADAYVFVG 310 (545)
Q Consensus 296 ~~~~l~~aD~vl~lG 310 (545)
..++.+.+|.+|++=
T Consensus 153 L~~L~~~~D~vIvi~ 167 (384)
T PRK09330 153 IEELRKHVDTLIVIP 167 (384)
T ss_pred HHHHHHHCCEEEEEe
Confidence 345667899999984
No 362
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=45.56 E-value=66 Score=31.85 Aligned_cols=70 Identities=13% Similarity=0.039 Sum_probs=45.6
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCccccccc--CCCCCcEEEEcCCcceecC-CCccccccHHHHHHHHHHHhcc
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSALAKKLRK 364 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~-~~~~~~~d~~~~l~~L~~~l~~ 364 (545)
.+.+...++|++|.+|+++.-...+.|.. .-.+.|++-|+.-+..-.+ .+.....+.+.++..|.+.|.-
T Consensus 209 ~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl~~~k~g~K~~ivNlQ~T~hDk~A~l~Ihg~vd~Vm~~lm~~Lgv 281 (353)
T KOG1905|consen 209 RATKAAKRADLILCLGTSLQILPKGNLPLKMKKRGGKIVIVNLQWTPHDKIANLKIHGKVDLVMASLMELLGV 281 (353)
T ss_pred HHHHHhhhcceEEEeccceEeeeCCCcchhHhccCceEEEEeCccCcccchhheeehhhHHHHHHHHHHHhCC
Confidence 45677789999999999986555544432 2246688888876653321 1122234677888888888754
No 363
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=45.20 E-value=69 Score=33.27 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=48.5
Q ss_pred HHHHHHHHHH--hcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCc-cceecCCCCCHHHHHHh
Q 009060 224 AVEATADFLN--KAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHF-IGTYWGAVSSSFCGEIV 300 (545)
Q Consensus 224 ~i~~~~~~l~--~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~-~G~~~G~~~~~~~~~~l 300 (545)
.++++.+.+. ..||++||.+.+....+..+.+.+..+..++.+. +|++--|.- ..+. ..+.+.+
T Consensus 16 ~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~-------if~~v~p~P~~~~v------~~~~~~~ 82 (377)
T COG1454 16 SLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYE-------VFDEVEPEPTIETV------EAGAEVA 82 (377)
T ss_pred hHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEE-------EecCCCCCCCHHHH------HHHHHHH
Confidence 4555666665 4589999999998877888888888888886653 233322211 0000 1122222
Q ss_pred --hcCCEEEEeCCC
Q 009060 301 --ESADAYVFVGPI 312 (545)
Q Consensus 301 --~~aD~vl~lG~~ 312 (545)
.++|.||.||.-
T Consensus 83 ~~~~~D~iIalGGG 96 (377)
T COG1454 83 REFGPDTIIALGGG 96 (377)
T ss_pred HhcCCCEEEEeCCc
Confidence 489999999953
No 364
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=45.11 E-value=60 Score=33.76 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=45.4
Q ss_pred HHHHHHHHHHh-cCCCEEEcCccc-cccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh-
Q 009060 224 AVEATADFLNK-AVKPVLVGGPNI-RVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (545)
Q Consensus 224 ~i~~~~~~l~~-a~rpvi~~G~g~-~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l- 300 (545)
.++++.+.+.+ .+|++|+.|.+. ...+..+.+.+..++.|+.+..- . + + +.+|-.--+ ..+.+.+
T Consensus 13 ~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~-~--~-v-~~~p~~~~v-------~~~~~~~~ 80 (380)
T cd08185 13 KLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVF-D--K-V-EPNPTTTTV-------MEGAALAR 80 (380)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEe-C--C-c-cCCCCHHHH-------HHHHHHHH
Confidence 34555555553 489999999876 35677888888888888876421 1 1 1 123332211 1122222
Q ss_pred -hcCCEEEEeCC
Q 009060 301 -ESADAYVFVGP 311 (545)
Q Consensus 301 -~~aD~vl~lG~ 311 (545)
.++|+||.||.
T Consensus 81 ~~~~D~IiavGG 92 (380)
T cd08185 81 EEGCDFVVGLGG 92 (380)
T ss_pred HcCCCEEEEeCC
Confidence 37899999996
No 365
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=44.65 E-value=1.7e+02 Score=28.85 Aligned_cols=96 Identities=11% Similarity=-0.020 Sum_probs=52.9
Q ss_pred ceEEEEcCCcchH-H---HHHHHHHhHhcCCc---EEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhc--eeEEE
Q 009060 90 VGACVVTFTVGGL-S---VLNAIAGAYSENLP---VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAI--TCSQA 160 (545)
Q Consensus 90 ~gv~~~t~GpG~~-n---~~~~l~~A~~~~~P---llvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~k~~~ 160 (545)
..++++..|=|+. | ..-+|-=|...+.| +|++.-+-.... ... ..+... .. +..+..+.+ --..+
T Consensus 140 ~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g~-sT~--~~~~~~-~~--~~~~~a~~~gip~~~V 213 (265)
T cd02016 140 KVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIGF-TTD--PRDSRS-SP--YCTDVAKMIGAPIFHV 213 (265)
T ss_pred CeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEE-Eec--HHHhcc-cc--cHHHHHeecCCCEEEE
Confidence 4577777776663 2 22333335556776 888876522110 000 000000 00 112233333 22234
Q ss_pred EeCChhhHHHHHHHHHHHhhhCCCcEEEEeC
Q 009060 161 VVNNLGDAHELIDTAISTALKESKPVYISIS 191 (545)
Q Consensus 161 ~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP 191 (545)
.=.+++.+.+.++.|++.++...||+.|++=
T Consensus 214 dG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~ 244 (265)
T cd02016 214 NGDDPEAVVRATRLALEYRQKFKKDVVIDLV 244 (265)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 4457788888999999999989999999964
No 366
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=44.50 E-value=90 Score=28.12 Aligned_cols=81 Identities=9% Similarity=-0.041 Sum_probs=50.4
Q ss_pred HHHHHhhhhcCCCeEEEE-EcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCCHHHHHHHcCC
Q 009060 446 GATLGYAQAAKDKRVIAC-IGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHN 524 (545)
Q Consensus 446 ~aAiGaala~p~r~vv~i-~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~~~~~~~l~~~d~~~lA~a~G~ 524 (545)
-+|-|.+.+. +++.+++ +..-++.-.+..+.+|...++|+++|.-+-...... . ..+...|...+.+.+-.
T Consensus 52 ~mA~gyar~t-g~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g~~~~~~~~----~---~~~q~~d~~~~~~~~tk 123 (164)
T cd07039 52 FAASAEAKLT-GKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELG----T---DYFQEVDLLALFKDVAV 123 (164)
T ss_pred HHHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCcccccC----C---CCCcccCHHHHHHHhhc
Confidence 4566666664 4565554 445566667899999999999999988655433220 0 12334567777777642
Q ss_pred CCCceeEEEEeecee
Q 009060 525 GEGKCWTAKVSIYKM 539 (545)
Q Consensus 525 ~~~~~~~~~v~~~~~ 539 (545)
+..++++.++
T Consensus 124 -----~~~~v~~~~~ 133 (164)
T cd07039 124 -----YNETVTSPEQ 133 (164)
T ss_pred -----EEEEeCCHHH
Confidence 4566665544
No 367
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=44.44 E-value=91 Score=33.47 Aligned_cols=90 Identities=12% Similarity=0.140 Sum_probs=57.9
Q ss_pred cCHHHHHHHHHhhC--------CCCCEEEecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEE
Q 009060 391 LRVNVLFKHIQDML--------SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIA 462 (545)
Q Consensus 391 ~~~~~~~~~l~~~l--------~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~ 462 (545)
..+..++..+.+.+ ....++++..++. -.. .+.+|+++.+.|-||++|+-+.-. .+-.|..
T Consensus 233 ~e~~~I~~~v~~~~~~~~~~~l~gkkvLITaGpT~-E~I------DpVR~ItN~SSGkmG~alA~aa~~----~GA~Vtl 301 (475)
T PRK13982 233 AEPLEIAAAAEALLRPPQPKPLAGRRVLITAGPTH-EPI------DPVRYIANRSSGKQGFAIAAAAAA----AGAEVTL 301 (475)
T ss_pred CCHHHHHHHHHHHHhhccccccCCCEEEEecCCcc-ccC------CcceeeCCCCchHHHHHHHHHHHH----CCCcEEE
Confidence 34566666665443 3345555544332 111 355699999999999988877543 3567999
Q ss_pred EEcchhh----------cccHHHHHHHHHhCCCeEEEEE
Q 009060 463 CIGDGSF----------QVTAQEISTMIRCGQRSIIFLI 491 (545)
Q Consensus 463 i~GDGsf----------~~~~~eL~ta~~~~lpi~ivV~ 491 (545)
|.|-.++ .-+..|+..+++..++.-++|+
T Consensus 302 I~Gp~~~~~p~~v~~i~V~ta~eM~~av~~~~~~Di~I~ 340 (475)
T PRK13982 302 ISGPVDLADPQGVKVIHVESARQMLAAVEAALPADIAIF 340 (475)
T ss_pred EeCCcCCCCCCCceEEEecCHHHHHHHHHhhCCCCEEEE
Confidence 9987664 1246888888877666555555
No 368
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=44.13 E-value=64 Score=33.53 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=46.2
Q ss_pred HHHHHHHHHHh--cCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh-
Q 009060 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (545)
Q Consensus 224 ~i~~~~~~l~~--a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l- 300 (545)
.++++.+.+.+ .+|++|+.|.+....+..+.+.+..+..++.+.. +.+ + +.||-.-.+ ..+.+.+
T Consensus 15 ~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~-f~~---v-~~~p~~~~v-------~~~~~~~~ 82 (377)
T cd08176 15 AIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVI-YDG---V-KPNPTITNV-------KDGLAVFK 82 (377)
T ss_pred HHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEE-eCC---C-CCCCCHHHH-------HHHHHHHH
Confidence 34555555554 4789999888776556788888888888887532 111 1 123433211 1222222
Q ss_pred -hcCCEEEEeCC
Q 009060 301 -ESADAYVFVGP 311 (545)
Q Consensus 301 -~~aD~vl~lG~ 311 (545)
.++|+||.||.
T Consensus 83 ~~~~D~IIavGG 94 (377)
T cd08176 83 KEGCDFIISIGG 94 (377)
T ss_pred hcCCCEEEEeCC
Confidence 37899999996
No 369
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=44.05 E-value=63 Score=33.58 Aligned_cols=75 Identities=15% Similarity=0.215 Sum_probs=45.6
Q ss_pred HHHHHHHHHh--cCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh--
Q 009060 225 VEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV-- 300 (545)
Q Consensus 225 i~~~~~~l~~--a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l-- 300 (545)
++++.+.+.+ .+|++|+.|.+....+..+.+.+..++.++.+..- . ++ +.+|-.-.+ ..+.+.+
T Consensus 17 l~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~-~--~v--~~~p~~~~v-------~~~~~~~~~ 84 (379)
T TIGR02638 17 IEDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELF-D--EV--KPNPTITVV-------KAGVAAFKA 84 (379)
T ss_pred HHHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEE-C--CC--CCCcCHHHH-------HHHHHHHHh
Confidence 4455555543 48999999988766667788888888888876421 1 11 123332111 1222222
Q ss_pred hcCCEEEEeCC
Q 009060 301 ESADAYVFVGP 311 (545)
Q Consensus 301 ~~aD~vl~lG~ 311 (545)
.++|+||.||.
T Consensus 85 ~~~D~IiaiGG 95 (379)
T TIGR02638 85 SGADYLIAIGG 95 (379)
T ss_pred cCCCEEEEeCC
Confidence 47899999996
No 370
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=44.03 E-value=96 Score=30.55 Aligned_cols=52 Identities=19% Similarity=0.148 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHhcCCCEEEcCccc-------c---ccchHHHHHHHHHHhCCceEeCCCC
Q 009060 221 LEAAVEATADFLNKAVKPVLVGGPNI-------R---VAKAQKAFIELADATGYPIAIMPSG 272 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~rpvi~~G~g~-------~---~~~a~~~l~~lae~~~~Pv~tt~~~ 272 (545)
+.+.+.+.++.|++...+++..|.-- . ..+..+.+++.++++|+|++|+...
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d 100 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMD 100 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCC
Confidence 45667788889998888888888221 1 1235678999999999999998764
No 371
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=43.91 E-value=2.6e+02 Score=29.99 Aligned_cols=132 Identities=13% Similarity=0.138 Sum_probs=75.4
Q ss_pred chHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhh-hceeEEEEeCChhhHHHHHHHHHHH
Q 009060 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQ-AITCSQAVVNNLGDAHELIDTAIST 178 (545)
Q Consensus 100 G~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~k~~~~v~~~~~~~~~l~~A~~~ 178 (545)
....++.-+..-. ..+|+|+|||..+... -+..++ ...-|-..+-+++++...++||++.
T Consensus 62 ~Gl~ll~~i~~~~-~~~pVI~~Tg~g~i~~------------------AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~ 122 (464)
T COG2204 62 DGLELLKEIKSRD-PDLPVIVMTGHGDIDT------------------AVEALRLGAFDFLEKPFDLDRLLAIVERALEL 122 (464)
T ss_pred chHHHHHHHHhhC-CCCCEEEEeCCCCHHH------------------HHHHHhcCcceeeeCCCCHHHHHHHHHHHHHH
Confidence 3445555555554 7899999999654331 111111 1222334444689999999999987
Q ss_pred hhhC--CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCcccc-ccchHHHH
Q 009060 179 ALKE--SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIR-VAKAQKAF 255 (545)
Q Consensus 179 a~~~--~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~-~~~a~~~l 255 (545)
.... ... ..+..- .. .... .. .++.-..+.+.+..++.+.-||+|.|.-.. ..-....|
T Consensus 123 ~~~~~e~~~---~~~~~~-----~~----~~~l-iG-----~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~I 184 (464)
T COG2204 123 RELQRENRR---SLKRAK-----SL----GGEL-VG-----ESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAI 184 (464)
T ss_pred hhhhhhhhh---hhhccc-----cc----cCCc-ee-----cCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHH
Confidence 6531 111 111100 00 0010 11 122345677888889999999999995332 22244566
Q ss_pred HHHHHHhCCceEe
Q 009060 256 IELADATGYPIAI 268 (545)
Q Consensus 256 ~~lae~~~~Pv~t 268 (545)
-+...+.+-|+++
T Consensus 185 H~~S~R~~~PFVa 197 (464)
T COG2204 185 HQASPRAKGPFIA 197 (464)
T ss_pred HhhCcccCCCcee
Confidence 6777777888887
No 372
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=43.69 E-value=26 Score=36.25 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCEEEcCccccccch----HHHHHHHHHHhCC
Q 009060 227 ATADFLNKAVKPVLVGGPNIRVAKA----QKAFIELADATGY 264 (545)
Q Consensus 227 ~~~~~l~~a~rpvi~~G~g~~~~~a----~~~l~~lae~~~~ 264 (545)
..++.|.++|+|+||+|.++..... ...+..+++.++.
T Consensus 213 ~~~~~L~~ak~p~Ii~G~~~~~~~~~~~~~~~~~~l~~~~~~ 254 (366)
T cd02774 213 LFCKQLKKSKKPLIIIGSSFSLRKNYSFIISKLKNFSSNNEN 254 (366)
T ss_pred HHHHHHhcCCCCEEEEChHHhCCCCHHHHHHHHHHHHHhhcC
Confidence 4567899999999999998865433 3455666666433
No 373
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=43.65 E-value=69 Score=33.77 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=45.4
Q ss_pred HHHHHHHHHh--cCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh--
Q 009060 225 VEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV-- 300 (545)
Q Consensus 225 i~~~~~~l~~--a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l-- 300 (545)
++++.+.+++ ++|++|+.|.+....+..+.+.+..+..|+.+..- .+ + +.+|-.-.+ ..+.+.+
T Consensus 11 ~~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f-~~--v--~~~p~~~~v-------~~~~~~~~~ 78 (414)
T cd08190 11 TAEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVY-DD--V--RVEPTDESF-------KDAIAFAKK 78 (414)
T ss_pred HHHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHHHcCCcEEEe-CC--C--CCCcCHHHH-------HHHHHHHHh
Confidence 4555555553 48999999988776667788888888888876421 10 1 123322111 1222222
Q ss_pred hcCCEEEEeCCC
Q 009060 301 ESADAYVFVGPI 312 (545)
Q Consensus 301 ~~aD~vl~lG~~ 312 (545)
.++|+||.||.-
T Consensus 79 ~~~D~IIaiGGG 90 (414)
T cd08190 79 GQFDAFVAVGGG 90 (414)
T ss_pred cCCCEEEEeCCc
Confidence 478999999954
No 374
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=43.56 E-value=69 Score=33.57 Aligned_cols=43 Identities=7% Similarity=0.078 Sum_probs=30.4
Q ss_pred HHHHHHHHHh--cCCCEEEcCccccccchHHHHHHHHHHhCCceE
Q 009060 225 VEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (545)
Q Consensus 225 i~~~~~~l~~--a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~ 267 (545)
++++.+.+++ .+|++|+.|......+..+.+.+..++.|+.+.
T Consensus 37 ~~~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~ 81 (395)
T PRK15454 37 VSSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMT 81 (395)
T ss_pred HHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEE
Confidence 4455555543 478888877777666777888888888888764
No 375
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=43.55 E-value=40 Score=35.25 Aligned_cols=46 Identities=9% Similarity=0.144 Sum_probs=37.1
Q ss_pred hHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEE
Q 009060 444 SVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLI 491 (545)
Q Consensus 444 ~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~ 491 (545)
++.+++||+++ +.+++..+-=.||.+-.--|.++.-..+|+++++.
T Consensus 61 A~~~aiGAs~a--GaRa~TaTSg~Gl~lm~E~l~~aa~~~lPiVi~~~ 106 (390)
T PRK08366 61 AMAACIGASAA--GARAFTATSAQGLALMHEMLHWAAGARLPIVMVDV 106 (390)
T ss_pred HHHHHHHHHhh--CCCeEeeeCcccHHHHhhHHHHHHhcCCCEEEEEe
Confidence 67889999887 56777777777777776779999999999888774
No 376
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=43.30 E-value=1.3e+02 Score=26.16 Aligned_cols=95 Identities=20% Similarity=0.154 Sum_probs=53.9
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChH--HHHHhhhc---C--CCCeEEecCchhH--HHHHH----hHHhh----h-c
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNL--TLLDHLIA---E--PELNLVGCCNELN--AGYAA----DGYAR----S-R 88 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~--~l~~al~~---~--~~i~~i~~~hE~~--A~~~A----~gyar----~-t 88 (545)
...++.+++.+++-|.=++||.-|+... ++...+.. . ..++.+ +.+... +.... .+|++ . .
T Consensus 22 ~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (138)
T PF13580_consen 22 EKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAI-ALNDDALTAISNDLEYDEGFARQLLALYD 100 (138)
T ss_dssp HHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEE-ETTSTHHHHHHHHTTGGGTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCccccccc-ccccchHhhhhcccchhhHHHHHHHHHcC
Confidence 3578999999999999999999666433 23332221 1 123333 333322 11111 23333 1 1
Q ss_pred ---C-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeC
Q 009060 89 ---G-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVG 123 (545)
Q Consensus 89 ---g-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g 123 (545)
| .-+++.++| -..|.+.++..|..-+.++|.|||
T Consensus 101 ~~~gDvli~iS~SG-~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 101 IRPGDVLIVISNSG-NSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp --TT-EEEEEESSS--SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCCEEEEECCCC-CCHHHHHHHHHHHHCCCEEEEEeC
Confidence 2 334444444 346889999999999999999986
No 377
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=43.20 E-value=20 Score=37.14 Aligned_cols=76 Identities=13% Similarity=0.236 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhh--c
Q 009060 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVE--S 302 (545)
Q Consensus 225 i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~--~ 302 (545)
++++.+.+.+-+|++||.|......+..+.+.+..++.++.+..-..- ..+|-+-.+ ..+.+.++ +
T Consensus 11 l~~l~~~l~~~gr~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~-----~~~p~~~~v-------~~~~~~~~~~~ 78 (366)
T PF00465_consen 11 LEELGEELKRLGRVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGV-----GPNPTLEDV-------DEAAEQARKFG 78 (366)
T ss_dssp GGGHHHHHHCTTEEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEE-----SSS-BHHHH-------HHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCEEEEECchHHhCccHHHHHHHHhhCceEEEEEecC-----CCCCcHHHH-------HHHHHHHHhcC
Confidence 455556666656999999985555557788888888889988532110 223333222 12233333 7
Q ss_pred CCEEEEeCCC
Q 009060 303 ADAYVFVGPI 312 (545)
Q Consensus 303 aD~vl~lG~~ 312 (545)
+|+||.||.-
T Consensus 79 ~D~IIaiGGG 88 (366)
T PF00465_consen 79 ADCIIAIGGG 88 (366)
T ss_dssp SSEEEEEESH
T ss_pred CCEEEEcCCC
Confidence 8999999953
No 378
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=42.93 E-value=59 Score=32.68 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEcC-ccccccchHHHHHHHHHHhCCceEe
Q 009060 222 EAAVEATADFLNKAVKPVLVGG-PNIRVAKAQKAFIELADATGYPIAI 268 (545)
Q Consensus 222 ~~~i~~~~~~l~~a~rpvi~~G-~g~~~~~a~~~l~~lae~~~~Pv~t 268 (545)
++..+++.+.|..+...+|++| +|...+++...+.++++..+++++.
T Consensus 72 ~~~~~~I~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~ 119 (304)
T cd02201 72 EESREEIKEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVA 119 (304)
T ss_pred HHHHHHHHHHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEE
Confidence 4455667778888888888888 3445577888899999999986654
No 379
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.88 E-value=54 Score=30.72 Aligned_cols=48 Identities=31% Similarity=0.343 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeC
Q 009060 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (545)
..++++.++..|.-||+|+|=+-+... +-..+++.+||+.+|+.+-..
T Consensus 55 A~eA~raAaA~LlLAk~PVISVNGN~A-AL~p~e~v~La~~~~aklEVN 102 (256)
T COG1701 55 ALEAIRAAAAALLLAKHPVISVNGNVA-ALVPEEVVELAEATGAKLEVN 102 (256)
T ss_pred HHHHHHHHHHHHHhccCCeEEEcCcee-eeCcHHHHHHHHHhCCceEEE
Confidence 456778888888889999998765543 347799999999999987553
No 380
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=42.43 E-value=61 Score=33.33 Aligned_cols=81 Identities=10% Similarity=0.029 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCccc-cccchHHHHHHHHHHhCCceEeCCCCccCCCCC-CCCccceecCCCCCHHHHHH
Q 009060 222 EAAVEATADFLNKAVKPVLVGGPNI-RVAKAQKAFIELADATGYPIAIMPSGKGLVPEH-HPHFIGTYWGAVSSSFCGEI 299 (545)
Q Consensus 222 ~~~i~~~~~~l~~a~rpvi~~G~g~-~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~-hpl~~G~~~G~~~~~~~~~~ 299 (545)
++..+++.+.|..+....|++|-|. ..+++...+.++++..+++++.-..-.-.+... .|..+ ....+++
T Consensus 89 ee~~d~Ir~~le~~D~vfI~aglGGGTGSG~apvia~~ake~~~l~vaivt~Pf~~Eg~~r~~nA--------~~~l~~L 160 (349)
T TIGR00065 89 EESRDEIRKLLEGADMVFITAGMGGGTGTGAAPVVAKIAKELGALTVAVVTKPFKFEGLKRRKKA--------EEGLERL 160 (349)
T ss_pred HHHHHHHHHHHhCCCEEEEEEeccCccchhHHHHHHHHHHHcCCCEEEEEeCCccccchhhHHHH--------HHHHHHH
Confidence 4456677778888888888888543 446788899999999888776532110000000 01110 0133455
Q ss_pred hhcCCEEEEeC
Q 009060 300 VESADAYVFVG 310 (545)
Q Consensus 300 l~~aD~vl~lG 310 (545)
.+.+|.+|++-
T Consensus 161 ~~~~D~vivid 171 (349)
T TIGR00065 161 KQAVDTLIVIP 171 (349)
T ss_pred HHhCCEEEEEe
Confidence 67889999884
No 381
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=42.32 E-value=75 Score=32.75 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=43.8
Q ss_pred HHHHHHHHHh-cCCCEEEcCccc-cccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh--
Q 009060 225 VEATADFLNK-AVKPVLVGGPNI-RVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV-- 300 (545)
Q Consensus 225 i~~~~~~l~~-a~rpvi~~G~g~-~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l-- 300 (545)
++++.+.+.+ .+|++|+.|... ...+..+.+.+..+..|+.+..- . ++ +.+|-.-.+ ....+.+
T Consensus 14 l~~l~~~~~~~g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~-~--~v--~~~p~~~~v-------~~~~~~~~~ 81 (357)
T cd08181 14 VEKHGEELAALGKRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIF-D--EV--EENPSLETI-------MEAVEIAKK 81 (357)
T ss_pred HHHHHHHHHHcCCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEe-C--CC--CCCcCHHHH-------HHHHHHHHh
Confidence 3444444443 489999998876 44566788888888878765321 1 11 123432211 1222222
Q ss_pred hcCCEEEEeCCC
Q 009060 301 ESADAYVFVGPI 312 (545)
Q Consensus 301 ~~aD~vl~lG~~ 312 (545)
.++|+||.||.-
T Consensus 82 ~~~D~IIavGGG 93 (357)
T cd08181 82 FNADFVIGIGGG 93 (357)
T ss_pred cCCCEEEEeCCc
Confidence 478999999953
No 382
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=42.29 E-value=43 Score=38.62 Aligned_cols=113 Identities=18% Similarity=0.061 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHH-HhCCceEeCCCCccCCCCCC----CCccceecCCCCCH
Q 009060 220 GLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELAD-ATGYPIAIMPSGKGLVPEHH----PHFIGTYWGAVSSS 294 (545)
Q Consensus 220 ~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae-~~~~Pv~tt~~~kg~~~~~h----pl~~G~~~G~~~~~ 294 (545)
+.+++++.+++.|++.+..+-+.+++-...+..-.+.+|+. .+|.+-+... ++..-+... +...|. ....
T Consensus 295 SWdEAld~ia~kL~~i~~~ia~~~s~~~t~Ee~y~~~kl~r~~lgt~nid~~-~r~~~~~~~~~~~~~~~g~---~~~~- 369 (797)
T PRK07860 295 SWSEALAVAARGLAAARGRVGVLVGGRLTVEDAYAYAKFARVALGTNDIDFR-ARPHSAEEADFLAARVAGR---GLGV- 369 (797)
T ss_pred CHHHHHHHHHHHHHhhhccEEEEeCCCCCHHHHHHHHHHHHHhcCCCccccc-cccccchHHHHHHhhccCC---CCCC-
Confidence 35678888888888776654444333222223334567776 5666544211 110000000 111111 0011
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCccc---ccccC--CCCCcEEEEcCCcc
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSV---GYSLL--IKKEKAIIVQPHRV 338 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~---~~~~~--~~~~~~i~id~d~~ 338 (545)
. .+-+.++|+||++|+...+.... .+... ..+.|+|.||+...
T Consensus 370 ~-~~Die~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t 417 (797)
T PRK07860 370 T-YADLEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFAT 417 (797)
T ss_pred C-HHHHHhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCc
Confidence 1 22367999999999886443221 11111 13569999988554
No 383
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=42.26 E-value=22 Score=36.35 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=29.4
Q ss_pred HHHHhhcCCEEEEeCCCCCCCcccccccC-CCCCcEEEEcCCcc
Q 009060 296 CGEIVESADAYVFVGPIFNDYSSVGYSLL-IKKEKAIIVQPHRV 338 (545)
Q Consensus 296 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~~-~~~~~~i~id~d~~ 338 (545)
+.+.+.+||++|+||+++.-.....+... .++.++|.|+.++.
T Consensus 199 a~~~~~~aDllLVIGTSL~V~Paa~l~~~a~~~~pvviIN~e~~ 242 (349)
T PTZ00410 199 VHHDIPEAELLLIIGTSLQVHPFALLACVVPKDVPRVLFNLERV 242 (349)
T ss_pred HHHHHHhCCEEEEECcCCcccCHHHHHHHHhcCCCEEEECcccc
Confidence 45567899999999999865544333211 24567888888765
No 384
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=41.91 E-value=24 Score=38.91 Aligned_cols=118 Identities=18% Similarity=0.169 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhcCC-----CEEEcCccccccchHHHHHHHHHH-hCCceEeCCCCccCCCCCCCCccceecCCCCC
Q 009060 220 GLEAAVEATADFLNKAVK-----PVLVGGPNIRVAKAQKAFIELADA-TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSS 293 (545)
Q Consensus 220 ~~~~~i~~~~~~l~~a~r-----pvi~~G~g~~~~~a~~~l~~lae~-~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~ 293 (545)
+.+++++.+++.|++.+. -+.+.+.+.........+.+|+.. +|.+.+.+...-...+...-+.... |....
T Consensus 71 SWdeAl~~ia~kl~~i~~~~G~~~i~~~~~~~~~~e~~~~~~~l~~~~~gs~~~~~~~~~c~~~~~~~~~~~~--G~~~~ 148 (565)
T cd02754 71 SWDEALDLIAERFKAIQAEYGPDSVAFYGSGQLLTEEYYAANKLAKGGLGTNNIDTNSRLCMASAVAGYKRSF--GADGP 148 (565)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCccHHHHHHHHHHHHHhCCCCcccCCCcccchHHHHHHHhhc--cCCCC
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCCcccccccCC----C--CCcEEEEcCCcce
Q 009060 294 SFCGEIVESADAYVFVGPIFNDYSSVGYSLLI----K--KEKAIIVQPHRVT 339 (545)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~----~--~~~~i~id~d~~~ 339 (545)
.....-+.++|+||++|+...+.....+..+. + +.|+|.||+....
T Consensus 149 ~~~~~Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~ 200 (565)
T cd02754 149 PGSYDDIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTR 200 (565)
T ss_pred CCCHHHHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCc
No 385
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=41.82 E-value=73 Score=32.95 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=46.1
Q ss_pred HHHHHHHHHHh--cCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh-
Q 009060 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (545)
Q Consensus 224 ~i~~~~~~l~~--a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l- 300 (545)
.++++.+.+.+ .+|++|+.|......+..+.+.+..++.|+.+..- .+ + +.||-.-.+ ..+.+.+
T Consensus 11 ~~~~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~-~~---v-~~~p~~~~v-------~~~~~~~~ 78 (370)
T cd08192 11 AIKELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALF-DE---V-PPNPTEAAV-------EAGLAAYR 78 (370)
T ss_pred HHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEe-CC---C-CCCCCHHHH-------HHHHHHHH
Confidence 34555555654 47899999988766567788888888878876431 11 1 233433221 1122222
Q ss_pred -hcCCEEEEeCC
Q 009060 301 -ESADAYVFVGP 311 (545)
Q Consensus 301 -~~aD~vl~lG~ 311 (545)
.++|+||.||.
T Consensus 79 ~~~~d~IIaiGG 90 (370)
T cd08192 79 AGGCDGVIAFGG 90 (370)
T ss_pred hcCCCEEEEeCC
Confidence 47899999996
No 386
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=41.58 E-value=75 Score=33.30 Aligned_cols=74 Identities=12% Similarity=0.075 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh--hcC
Q 009060 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV--ESA 303 (545)
Q Consensus 226 ~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l--~~a 303 (545)
+++...+...+|++|+.|.+....+..+.+.+..++.|+.+..-... +.+|-.-.+ ....+.+ .++
T Consensus 12 ~~l~~~~~~~~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v-----~~~p~~~~v-------~~~~~~~~~~~~ 79 (398)
T cd08178 12 PYALLDLKGKKRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDV-----EPDPSLETV-------RKGLELMNSFKP 79 (398)
T ss_pred HHHHHHhcCCCeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCC-----CCCcCHHHH-------HHHHHHHHhcCC
Confidence 33333444568999999887766667788888888888766421100 123332211 1222222 478
Q ss_pred CEEEEeCC
Q 009060 304 DAYVFVGP 311 (545)
Q Consensus 304 D~vl~lG~ 311 (545)
|+||.||.
T Consensus 80 D~IIaiGG 87 (398)
T cd08178 80 DTIIALGG 87 (398)
T ss_pred CEEEEeCC
Confidence 99999996
No 387
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=41.42 E-value=21 Score=33.87 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=31.2
Q ss_pred HHHHhhcCCEEEEeCCCCCCCcccccccC--CCCCcEEEEcCCccee
Q 009060 296 CGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTV 340 (545)
Q Consensus 296 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~ 340 (545)
+.+.+.++|++|++|+++.......+-.. .++.+++.|+.++...
T Consensus 163 ~~~~~~~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~~~ 209 (222)
T cd00296 163 ALEALLEADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPTPA 209 (222)
T ss_pred HHHHHhcCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCCCC
Confidence 34556689999999999976654433221 1466899999888654
No 388
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=41.22 E-value=46 Score=37.07 Aligned_cols=119 Identities=15% Similarity=0.128 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHhcC----CCEEE--cCccccc---cchHHHHHHHHHHhCCceEeC-CCCccCCCCCCCCccceecCC
Q 009060 221 LEAAVEATADFLNKAV----KPVLV--GGPNIRV---AKAQKAFIELADATGYPIAIM-PSGKGLVPEHHPHFIGTYWGA 290 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~----rpvi~--~G~g~~~---~~a~~~l~~lae~~~~Pv~tt-~~~kg~~~~~hpl~~G~~~G~ 290 (545)
-+++++.+++.|++.+ .-.|+ .|.+... ......+.+|+..+|.++-.. ..+-+..-..++..+|.. ..
T Consensus 78 WDEAl~~iA~kl~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~c~~~~~~~~~~~~G~~-~~ 156 (609)
T cd02751 78 WDEALDLVASELKRIREKYGNEAIFGGSYGWASAGRLHHAQSLLHRFLNLIGGYLGSYGTYSTGAAQVILPHVVGSD-EV 156 (609)
T ss_pred HHHHHHHHHHHHHHHHHHhCcceeecccCCcccccccccchHHHHHHHHhcCCCcCCCCCccHHHHHhHhhhEEccc-hh
Confidence 4678888888876532 12232 2322211 123456778888887644211 000000001112233321 00
Q ss_pred C-CCHHHHHHhhcCCEEEEeCCCCCCCccccc-----------cc-CCCCCcEEEEcCCccee
Q 009060 291 V-SSSFCGEIVESADAYVFVGPIFNDYSSVGY-----------SL-LIKKEKAIIVQPHRVTV 340 (545)
Q Consensus 291 ~-~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~-----------~~-~~~~~~~i~id~d~~~~ 340 (545)
. ......++..++|+||++|+...+.....| .. .-++.|+|.||+.....
T Consensus 157 ~~~~~~~~D~~~~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr~s~t 219 (609)
T cd02751 157 YEQGTSWDDIAEHSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPRYTDT 219 (609)
T ss_pred ccCCCChhhHHhcCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCCCCcc
Confidence 0 011123333459999999988533322111 11 11467999999876644
No 389
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=41.09 E-value=1.5e+02 Score=29.02 Aligned_cols=102 Identities=19% Similarity=0.007 Sum_probs=61.3
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCC-------CCeEEecCchhHHH-------------HHHhHHhh
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP-------ELNLVGCCNELNAG-------------YAADGYAR 86 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~-------~i~~i~~~hE~~A~-------------~~A~gyar 86 (545)
-...+.+++.|++.|-=++||.-.+..+.++|+.+..+ .+..+..-.+.+.. ....-...
T Consensus 36 ~~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~a~~ 115 (257)
T cd05007 36 ARAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAIN 115 (257)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHHHHHHHHcC
Confidence 34568899999998887888887777777777654321 23333333322111 11111111
Q ss_pred hcCceEEEEcCCcc-hHHHHHHHHHhHhcCCcEEEEeCCCCCc
Q 009060 87 SRGVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSN 128 (545)
Q Consensus 87 ~tg~gv~~~t~GpG-~~n~~~~l~~A~~~~~Pllvi~g~~~~~ 128 (545)
.+.-=+++..|..| ....+.++..|...+.|++.||+...+.
T Consensus 116 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~ 158 (257)
T cd05007 116 LTERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSP 158 (257)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 12123444445555 4456778888999999999999876654
No 390
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=41.01 E-value=77 Score=32.86 Aligned_cols=75 Identities=16% Similarity=0.208 Sum_probs=44.4
Q ss_pred HHHHHHHHHh--cCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh--
Q 009060 225 VEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV-- 300 (545)
Q Consensus 225 i~~~~~~l~~--a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l-- 300 (545)
++++.+.+.+ ++|++|+.|.+....+..+.+.+..++.|+.+..- . + + +.||-.--+ ..+.+.+
T Consensus 14 l~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~-~--~-v-~~~p~~~~v-------~~~~~~~~~ 81 (374)
T cd08189 14 LAQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVY-D--G-V-PPDPTIENV-------EAGLALYRE 81 (374)
T ss_pred HHHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEe-C--C-C-CCCcCHHHH-------HHHHHHHHh
Confidence 4455555543 47899998888766566777888888888865421 1 0 1 123332111 1222222
Q ss_pred hcCCEEEEeCC
Q 009060 301 ESADAYVFVGP 311 (545)
Q Consensus 301 ~~aD~vl~lG~ 311 (545)
.++|+||.||.
T Consensus 82 ~~~d~IIaiGG 92 (374)
T cd08189 82 NGCDAILAVGG 92 (374)
T ss_pred cCCCEEEEeCC
Confidence 47899999996
No 391
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=40.80 E-value=49 Score=34.40 Aligned_cols=50 Identities=18% Similarity=0.328 Sum_probs=38.3
Q ss_pred hHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCc
Q 009060 444 SVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGG 495 (545)
Q Consensus 444 ~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~ 495 (545)
++.+++||+.+ +.+++..+-=+||.+-.--|..++-..+|+++++.+..+
T Consensus 60 A~~~a~GAs~a--G~Ra~TaTSg~Gl~lm~E~~~~a~~~e~P~Viv~~~R~g 109 (376)
T PRK08659 60 SMAAVIGASWA--GAKAMTATSGPGFSLMQENIGYAAMTETPCVIVNVQRGG 109 (376)
T ss_pred HHHHHHhHHhh--CCCeEeecCCCcHHHHHHHHHHHHHcCCCEEEEEeecCC
Confidence 67888998887 566777766666666556677777778999999998775
No 392
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=40.32 E-value=80 Score=32.78 Aligned_cols=76 Identities=21% Similarity=0.266 Sum_probs=44.8
Q ss_pred HHHHHHHHHHh--cCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh-
Q 009060 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (545)
Q Consensus 224 ~i~~~~~~l~~--a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l- 300 (545)
.++++.+.+.+ ++|++|+.|......+..+.+.+..+..++.+.. +. ++ +.+|-.-.+. ...+.+
T Consensus 15 ~l~~l~~~l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~-~~--~v--~~~p~~~~v~-------~~~~~~~ 82 (377)
T cd08188 15 ALKLAGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVV-FS--DV--SPNPRDEEVM-------AGAELYL 82 (377)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEE-eC--CC--CCCCCHHHHH-------HHHHHHH
Confidence 34555555554 4889999998776656678888887887876642 11 11 1133222111 111222
Q ss_pred -hcCCEEEEeCC
Q 009060 301 -ESADAYVFVGP 311 (545)
Q Consensus 301 -~~aD~vl~lG~ 311 (545)
.++|+||.||.
T Consensus 83 ~~~~d~IIaiGG 94 (377)
T cd08188 83 ENGCDVIIAVGG 94 (377)
T ss_pred hcCCCEEEEeCC
Confidence 47899999996
No 393
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=40.32 E-value=1.2e+02 Score=28.53 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=28.9
Q ss_pred EEEEcCCcchHHHHHHHHH-hHhcCCcEEEEeCCCCCc
Q 009060 92 ACVVTFTVGGLSVLNAIAG-AYSENLPVICIVGGPNSN 128 (545)
Q Consensus 92 v~~~t~GpG~~n~~~~l~~-A~~~~~Pllvi~g~~~~~ 128 (545)
+++..||.|-+.-+..++. |..-++|+|.||+.+.+.
T Consensus 89 vviaiS~SGeT~el~~~~~~aK~~g~~liaiT~~~~Ss 126 (202)
T COG0794 89 VVIAISGSGETKELLNLAPKAKRLGAKLIAITSNPDSS 126 (202)
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHcCCcEEEEeCCCCCh
Confidence 6677899998866655554 788999999999987665
No 394
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=40.00 E-value=80 Score=32.86 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=46.0
Q ss_pred HHHHHHHHHHh--cCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh-
Q 009060 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (545)
Q Consensus 224 ~i~~~~~~l~~--a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l- 300 (545)
.++++.+.+.+ .+|++|+.|......+..+.+.+..++.|+.+.. +. ++ +.+|-.-.+ ..+.+.+
T Consensus 17 ~l~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~-~~--~v--~~~p~~~~v-------~~~~~~~~ 84 (382)
T PRK10624 17 AIGALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEI-YD--GV--KPNPTIEVV-------KEGVEVFK 84 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEE-eC--CC--CCCcCHHHH-------HHHHHHHH
Confidence 34555555553 4788888888777666788899988888886532 11 11 123322111 1122222
Q ss_pred -hcCCEEEEeCC
Q 009060 301 -ESADAYVFVGP 311 (545)
Q Consensus 301 -~~aD~vl~lG~ 311 (545)
.++|+||.||.
T Consensus 85 ~~~~D~IIaiGG 96 (382)
T PRK10624 85 ASGADYLIAIGG 96 (382)
T ss_pred hcCCCEEEEeCC
Confidence 37999999996
No 395
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=39.25 E-value=80 Score=29.00 Aligned_cols=64 Identities=19% Similarity=0.410 Sum_probs=28.5
Q ss_pred HHHHHHHHH--hcCCCEEEcCcccccc--chHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh
Q 009060 225 VEATADFLN--KAVKPVLVGGPNIRVA--KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (545)
Q Consensus 225 i~~~~~~l~--~a~rpvi~~G~g~~~~--~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l 300 (545)
++++.+.+. +.++|++++=...... -..+++++..+.-+-|++ +.+|+-+| -..+++
T Consensus 90 le~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~lr~~l~~~~~P~L--------------llFGTGwG-----L~~ev~ 150 (185)
T PF09936_consen 90 LEEAIEDIEEEEGKRPLLVATSARKYPNTISYAELRRMLEEEDRPVL--------------LLFGTGWG-----LAPEVM 150 (185)
T ss_dssp HHHHHHHHHHHHSS--EEEE--SS--SS-B-HHHHHHHHHH--S-EE--------------EEE--TT--------HHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHHHHHHHhccCCeEE--------------EEecCCCC-----CCHHHH
Confidence 444444443 4688888865433222 245777777777677775 33454222 345777
Q ss_pred hcCCEEE
Q 009060 301 ESADAYV 307 (545)
Q Consensus 301 ~~aD~vl 307 (545)
+.||.+|
T Consensus 151 ~~~D~iL 157 (185)
T PF09936_consen 151 EQCDYIL 157 (185)
T ss_dssp TT-SEEB
T ss_pred HhcCeeE
Confidence 7888654
No 396
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=38.57 E-value=50 Score=30.84 Aligned_cols=47 Identities=17% Similarity=0.131 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeC
Q 009060 223 AAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (545)
Q Consensus 223 ~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (545)
..+.+.+..+...++.+-++--...|.++.++|+.+|+.+|+|+...
T Consensus 16 Tt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~ 62 (196)
T PF00448_consen 16 TTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVA 62 (196)
T ss_dssp HHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEES
T ss_pred hHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchh
Confidence 34555555444334444444455666789999999999999999763
No 397
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=37.87 E-value=3.2e+02 Score=26.94 Aligned_cols=77 Identities=16% Similarity=0.100 Sum_probs=49.1
Q ss_pred eEEEEEcchhhccc--HH--HHHHHHHhCCCeEEEEEeCCc--hhhhhhhcCCCCCCCCCCCHHHHHHHcCCCCCceeEE
Q 009060 459 RVIACIGDGSFQVT--AQ--EISTMIRCGQRSIIFLINNGG--YTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTA 532 (545)
Q Consensus 459 ~vv~i~GDGsf~~~--~~--eL~ta~~~~lpi~ivV~NN~~--~g~~~~~~~~~~~~l~~~d~~~lA~a~G~~~~~~~~~ 532 (545)
+++.++-||...++ .. .+..+.+.++-+.+|+++|.. -++.. +..-.|.+-......+.-+.|+.+ |+.
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d-~~~~~~~~~~~~~l~~Yl~~fpfp----Yy~ 240 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILD-IKVVSFKNDKSGVITPYLDEFPFP----YYV 240 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCccc-ccccccCCCCccHHHHHHhcCCCC----eEE
Confidence 89999999996654 22 255567779999999999973 33311 001112211112667788899998 456
Q ss_pred EEeeceee
Q 009060 533 KVSIYKMC 540 (545)
Q Consensus 533 ~v~~~~~~ 540 (545)
-|+++++|
T Consensus 241 ~~~~~~~l 248 (266)
T cd01460 241 IVRDLNQL 248 (266)
T ss_pred EecChhHh
Confidence 67776665
No 398
>COG2006 Uncharacterized conserved protein [Function unknown]
Probab=37.86 E-value=3.9e+02 Score=26.38 Aligned_cols=125 Identities=20% Similarity=0.213 Sum_probs=66.7
Q ss_pred EEeCChhhHHHHHHHHHHHhhh-----CCC-cEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHH
Q 009060 160 AVVNNLGDAHELIDTAISTALK-----ESK-PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLN 233 (545)
Q Consensus 160 ~~v~~~~~~~~~l~~A~~~a~~-----~~G-PV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~ 233 (545)
.+..+.++..+.++++++..-. .+| -|+| --+++... + | ..+. ...++.+..+++++.
T Consensus 8 ~~~~syk~~r~sv~~~lel~gg~~~~i~~G~~VlL--KPN~lta~-------p-p----e~~~--tThPevv~Av~~~v~ 71 (293)
T COG2006 8 VRCESYKDTRKSVRTVLELLGGLEAFISPGDRVLL--KPNLLTAD-------P-P----EAPC--TTHPEVVAAVAEVVK 71 (293)
T ss_pred EecCCcHHHHHHHHHHHHHccccccccCCCCEEEe--cCccccCC-------C-C----CCCC--ccCHHHHHHHHHHHH
Confidence 5566777888888888877642 122 2222 12222110 0 0 0011 123567888888888
Q ss_pred hcCC-CEEEcCccccc-cch--HHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEe
Q 009060 234 KAVK-PVLVGGPNIRV-AKA--QKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFV 309 (545)
Q Consensus 234 ~a~r-pvi~~G~g~~~-~~a--~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~l 309 (545)
++.- |++.--.|-.. ++. ..-+.++||++++++++-- +++.+-. +.+... ....+.+.++|++|.+
T Consensus 72 e~g~ep~vgd~pg~~st~~vlk~~Gi~dla~~~~~~iv~F~-~~~~~~~--s~~~~~-------~~ia~~vl~aD~vI~L 141 (293)
T COG2006 72 EAGGEPVVGDSPGFGSTSGVLKTTGILDLAEALGLEIVNFD-TKRYVLG--SEWFQG-------LKIAEPVLEADVVINL 141 (293)
T ss_pred HhCCcceEecCCCCccHHHHHHHhCHHHHHHHcCCceeeec-cCceEec--cccccC-------cccchhhhccceEEec
Confidence 7764 44443223111 111 2347889999999999755 4432222 222211 1234566789999887
Q ss_pred C
Q 009060 310 G 310 (545)
Q Consensus 310 G 310 (545)
=
T Consensus 142 P 142 (293)
T COG2006 142 P 142 (293)
T ss_pred c
Confidence 3
No 399
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=37.78 E-value=1.2e+02 Score=31.55 Aligned_cols=43 Identities=7% Similarity=0.159 Sum_probs=30.3
Q ss_pred HHHHHHHHHh-cCCCEEEcCccccccchHHHHHHHHHHhCCceE
Q 009060 225 VEATADFLNK-AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (545)
Q Consensus 225 i~~~~~~l~~-a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~ 267 (545)
++++.+.+++ .+|++|+.|.+....+..+.+.+..++.++.+.
T Consensus 11 l~~l~~~~~~~g~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~ 54 (386)
T cd08191 11 RRQLPRLAARLGSRALIVTDERMAGTPVFAELVQALAAAGVEVE 54 (386)
T ss_pred HHHHHHHHHHcCCeEEEEECcchhhcchHHHHHHHHHHcCCeEE
Confidence 3444445543 388999998877656777888888888887764
No 400
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=37.70 E-value=60 Score=37.74 Aligned_cols=68 Identities=19% Similarity=0.121 Sum_probs=36.4
Q ss_pred eEEEEEcchhhccc--HHH-HHHHHHhCCC---eEEEEEeCCchhhhhhhcCCCCCCCCCCCHHHHHHHcCCCCCceeE
Q 009060 459 RVIACIGDGSFQVT--AQE-ISTMIRCGQR---SIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWT 531 (545)
Q Consensus 459 ~vv~i~GDGsf~~~--~~e-L~ta~~~~lp---i~ivV~NN~~~g~~~~~~~~~~~~l~~~d~~~lA~a~G~~~~~~~~ 531 (545)
-.|++-||.+|-=- ..| |..+.-.+.+ .+.||.||+ +|+.. .+-..-.......+|++++++..+|++
T Consensus 649 lpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNq-iGftT----~p~~~Rss~y~td~ak~~~~PifhVNG 722 (1228)
T PRK12270 649 LPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQ-VGFTT----APESSRSSEYATDVAKMIQAPIFHVNG 722 (1228)
T ss_pred eEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecC-ccccc----CccccccchhhHHHHhhcCCCEEeECC
Confidence 35678999998653 334 2223333566 788888887 66610 000000112344566677777554444
No 401
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=36.99 E-value=27 Score=34.24 Aligned_cols=140 Identities=23% Similarity=0.228 Sum_probs=76.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCCChH--HHHHhhhcCCCCeEEecC----------chhHHHHHHhHHhhhcC-ceEEEEc
Q 009060 30 GRHLARRLVEIGAKDVFSVPGDFNL--TLLDHLIAEPELNLVGCC----------NELNAGYAADGYARSRG-VGACVVT 96 (545)
Q Consensus 30 a~~i~~~L~~~GV~~vFg~pG~~~~--~l~~al~~~~~i~~i~~~----------hE~~A~~~A~gyar~tg-~gv~~~t 96 (545)
..+.++.+.+.|.+.|.-.-+...+ =+.+.|. +..++|... +|.--+.+=.||--..| +..++.|
T Consensus 39 vnAaiega~~aGa~eVvV~DsHg~~~Nll~e~L~--~~a~LI~G~pkp~~Mm~Gld~~~D~v~fiGYHa~ag~~~gvL~H 116 (266)
T cd08663 39 VNAAIEGALEAGATEVLVNDSHGSMRNLLPEDLD--PRARLISGSPKPLGMMEGLDEGFDAALFVGYHARAGTPPGVLSH 116 (266)
T ss_pred HHHHHHHHHHcCCcEEEEEcCCCCccCcChHHCC--ccEEEEecCCCCchhhhccccCcCEEEEEecCCCcCCCCCcccc
Confidence 4567889999999999998765443 2334443 456666333 33333333446544334 3223333
Q ss_pred CCcch--HH-----------HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeC
Q 009060 97 FTVGG--LS-----------VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN 163 (545)
Q Consensus 97 ~GpG~--~n-----------~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~ 163 (545)
+-.|. .+ .+++ +-|-.-++||+++|||......-+. +. ++ ...+..=+.+.+++....
T Consensus 117 T~s~~~v~~v~iNG~~vgE~glna-~~Ag~~gVPV~lVsGDd~~~~ea~~------~~-p~-i~tv~vK~~~gr~aa~~~ 187 (266)
T cd08663 117 TYSGGAVRDVRLNGREVGETGLNA-AVAGEYGVPVVLVTGDDAACAEARE------LG-PG-VETVAVKEAIGRFAARCL 187 (266)
T ss_pred cccccceEEEEECCEEcCHHHHHH-HHHhhcCCCEEEEecCHHHHHHHHh------hC-CC-cEEEEEecccCCCccccC
Confidence 32221 11 2222 2344569999999998654321110 00 00 001122233445677777
Q ss_pred ChhhHHHHHHHHHHHhh
Q 009060 164 NLGDAHELIDTAISTAL 180 (545)
Q Consensus 164 ~~~~~~~~l~~A~~~a~ 180 (545)
+|++..+.|+++.+.|.
T Consensus 188 ~p~~a~~~I~~~a~~Al 204 (266)
T cd08663 188 PPAEARALIREAAAEAV 204 (266)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 89999999999998885
No 402
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=36.60 E-value=30 Score=34.45 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHhcCCCEEEcCccccc
Q 009060 220 GLEAAVEATADFLNKAVKPVLVGGPNIRV 248 (545)
Q Consensus 220 ~~~~~i~~~~~~l~~a~rpvi~~G~g~~~ 248 (545)
.++.++++++++|+++++.|++.|.|...
T Consensus 4 ~~~~~l~~l~~~i~~~~~ivvlTGAGiS~ 32 (285)
T PRK05333 4 ADPAALDALQDFVERHPRLFVLTGAGIST 32 (285)
T ss_pred ccHHHHHHHHHHHHhCCcEEEEeCCcccc
Confidence 36778899999999999999999999853
No 403
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=35.80 E-value=96 Score=31.78 Aligned_cols=41 Identities=10% Similarity=0.199 Sum_probs=28.4
Q ss_pred HHHHHHHHHh-cCCCEEEcCccccccchHHHHHHHHHHhCCce
Q 009060 225 VEATADFLNK-AVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (545)
Q Consensus 225 i~~~~~~l~~-a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv 266 (545)
++++.+.+++ .+|++|+.|.+... +..+.+.+..+..++.+
T Consensus 11 ~~~l~~~~~~~~~r~livt~~~~~~-~~~~~v~~~L~~~~i~~ 52 (351)
T cd08170 11 LDELGEYLARLGKRALIIADEFVLD-LVGAKIEESLAAAGIDA 52 (351)
T ss_pred HHHHHHHHHHhCCeEEEEECHHHHH-HHHHHHHHHHHhCCCeE
Confidence 3444444443 58999999887765 67777888778878875
No 404
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=35.55 E-value=93 Score=32.35 Aligned_cols=72 Identities=19% Similarity=0.129 Sum_probs=40.2
Q ss_pred HHHHHHHHh-cCCCEEEcCcccc-ccchHHHHHHHHHHhCCceEeCCCCccCCCC--CCCCccceecCCCCCHHHHHHh-
Q 009060 226 EATADFLNK-AVKPVLVGGPNIR-VAKAQKAFIELADATGYPIAIMPSGKGLVPE--HHPHFIGTYWGAVSSSFCGEIV- 300 (545)
Q Consensus 226 ~~~~~~l~~-a~rpvi~~G~g~~-~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~--~hpl~~G~~~G~~~~~~~~~~l- 300 (545)
+++.+.+.+ .+|++|+.|.... ..+..+.+.+..+..|+-+.. |++ .||-.-.+ ..+.+.+
T Consensus 18 ~~l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~-------~~~v~~~p~~~~v-------~~~~~~~~ 83 (382)
T cd08187 18 SELGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVE-------LGGVEPNPRLETV-------REGIELCK 83 (382)
T ss_pred HHHHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEE-------ECCccCCCCHHHH-------HHHHHHHH
Confidence 333333433 5899999886443 345567787777777775532 221 23322111 1111222
Q ss_pred -hcCCEEEEeCC
Q 009060 301 -ESADAYVFVGP 311 (545)
Q Consensus 301 -~~aD~vl~lG~ 311 (545)
.++|+||.||.
T Consensus 84 ~~~~D~IIaiGG 95 (382)
T cd08187 84 EEKVDFILAVGG 95 (382)
T ss_pred HcCCCEEEEeCC
Confidence 47899999996
No 405
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=35.55 E-value=1.2e+02 Score=31.35 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=46.4
Q ss_pred HHHHHHHHHHh--cCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh-
Q 009060 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (545)
Q Consensus 224 ~i~~~~~~l~~--a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l- 300 (545)
.++++.+.+.+ .+|++|+.|......+..+.+.+..++.++.+.. +.+ .+.||-.-.+. ...+.+
T Consensus 10 ~l~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~-~~~----~~~~p~~~~v~-------~~~~~~~ 77 (370)
T cd08551 10 AIEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVI-FDG----VEPNPTLSNVD-------AAVAAYR 77 (370)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEE-ECC----CCCCCCHHHHH-------HHHHHHH
Confidence 35566666664 4899999998776556778888887877776532 111 12344432221 122222
Q ss_pred -hcCCEEEEeCCC
Q 009060 301 -ESADAYVFVGPI 312 (545)
Q Consensus 301 -~~aD~vl~lG~~ 312 (545)
.++|+||.+|.-
T Consensus 78 ~~~~d~IiaiGGG 90 (370)
T cd08551 78 EEGCDGVIAVGGG 90 (370)
T ss_pred hcCCCEEEEeCCc
Confidence 368999999963
No 406
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=35.51 E-value=42 Score=26.98 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=21.4
Q ss_pred hcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcc
Q 009060 301 ESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRV 338 (545)
Q Consensus 301 ~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~ 338 (545)
.++|++|++|+.+..-.. +.+.|+|.+|....
T Consensus 39 ~dAeLviV~G~sipnd~~------l~GKkv~i~d~~~A 70 (103)
T COG3925 39 NDAELVIVFGSSIPNDSA------LNGKKVWIGDIERA 70 (103)
T ss_pred CcccEEEEeccccCCCcc------ccCceEEEecHHHH
Confidence 579999999988753221 23457777776543
No 407
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=35.43 E-value=2e+02 Score=25.70 Aligned_cols=55 Identities=27% Similarity=0.341 Sum_probs=39.1
Q ss_pred HHHHHHcCCC----EEEecCCCChHHHHH-hhhcCCCCeEE----------ecCchhHHHHHHhHHhhhc
Q 009060 34 ARRLVEIGAK----DVFSVPGDFNLTLLD-HLIAEPELNLV----------GCCNELNAGYAADGYARSR 88 (545)
Q Consensus 34 ~~~L~~~GV~----~vFg~pG~~~~~l~~-al~~~~~i~~i----------~~~hE~~A~~~A~gyar~t 88 (545)
.+.|+++|++ .++-+||....|+.- .|.+..+..-| ..++|..|...+.|..+++
T Consensus 35 ~~~l~~~G~~~~~i~vv~VPGa~EiPl~a~~La~~~~yDAvv~lG~VIrG~T~Hfd~Va~~~~~gl~~vs 104 (152)
T COG0054 35 VDALKRHGADVDNIDVVRVPGAFEIPLAAKKLARTGKYDAVVALGAVIRGETYHFDYVANEVARGLMDVS 104 (152)
T ss_pred HHHHHHcCCCcccceEEEeCCcchhHHHHHHHHhcCCcceEEEEeeEEeCCCccHHHHHHHHHHHHHHHH
Confidence 3667788865 499999999999765 45544333333 2458888888888888875
No 408
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.17 E-value=50 Score=29.57 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=29.8
Q ss_pred cCCC-EEEcCcccc----ccchHHHHHHHHHHhCCceEeCCCCcc
Q 009060 235 AVKP-VLVGGPNIR----VAKAQKAFIELADATGYPIAIMPSGKG 274 (545)
Q Consensus 235 a~rp-vi~~G~g~~----~~~a~~~l~~lae~~~~Pv~tt~~~kg 274 (545)
+++| ++++|.-+. +.-..++..+||+++|+|.+.|....|
T Consensus 122 cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 122 CENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 5666 667787553 223567889999999999999987655
No 409
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=34.72 E-value=38 Score=27.91 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=23.3
Q ss_pred HHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCC
Q 009060 232 LNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS 271 (545)
Q Consensus 232 l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~ 271 (545)
+...-+-+|+.|+.. -.+.+.++|+..++||+.|+.
T Consensus 58 ~~~~i~~iIltg~~~----~~~~v~~la~~~~i~vi~t~~ 93 (105)
T PF07085_consen 58 IEAGIACIILTGGLE----PSEEVLELAKELGIPVISTPY 93 (105)
T ss_dssp CCTTECEEEEETT--------HHHHHHHHHHT-EEEE-SS
T ss_pred HHhCCCEEEEeCCCC----CCHHHHHHHHHCCCEEEEECC
Confidence 333346678887543 568999999999999999875
No 410
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=34.39 E-value=1.1e+02 Score=29.91 Aligned_cols=120 Identities=22% Similarity=0.270 Sum_probs=68.7
Q ss_pred HHHHHhcCCC------EEEcCcccc-ccchHHHHHHHHHHhCCceEeCCCC--ccCCCCCCCCccceecCCCCCHHHHHH
Q 009060 229 ADFLNKAVKP------VLVGGPNIR-VAKAQKAFIELADATGYPIAIMPSG--KGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (545)
Q Consensus 229 ~~~l~~a~rp------vi~~G~g~~-~~~a~~~l~~lae~~~~Pv~tt~~~--kg~~~~~hpl~~G~~~G~~~~~~~~~~ 299 (545)
-+.|.+++|| +++.|+... ..+..+.|-.||+++|+.|=.|-.+ .|.+|.+ +-+|- .|.
T Consensus 204 ~~~ltkseRPdL~sAkvVVsGGR~LKs~enFkll~~LAdklgaavGAtRaaVDaGyvpNd--lQiGQ----TGK------ 271 (336)
T KOG3954|consen 204 SQELTKSERPDLTSAKVVVSGGRGLKSGENFKLLYDLADKLGAAVGATRAAVDAGYVPND--LQIGQ----TGK------ 271 (336)
T ss_pred HhhcccccCCccccceEEEECCcccCCcccceehHHHHHHhchhhchhhhhhccCcCCCc--ccccc----ccc------
Confidence 3566778888 677766554 4456678899999999999877654 3555544 33443 221
Q ss_pred hhcCCEEEEeCCCCCCCcccccccCCCCC-cEEEEcCCcceec-CCCcccc-ccHHHHHHHHHHHhcc
Q 009060 300 VESADAYVFVGPIFNDYSSVGYSLLIKKE-KAIIVQPHRVTVG-NGPSLGW-VFMADFLSALAKKLRK 364 (545)
Q Consensus 300 l~~aD~vl~lG~~~~~~~~~~~~~~~~~~-~~i~id~d~~~~~-~~~~~~~-~d~~~~l~~L~~~l~~ 364 (545)
+-.+.+-|++|.+-.-.-..+ .++. .++-|+.|++..= +...++- .|+-.++..|.++|+.
T Consensus 272 IVAPeLYiAvGisGAIQHLAG----mKDSKvIvAINkDpdAPIFqvAD~GlvgDLfkiVPELtekL~k 335 (336)
T KOG3954|consen 272 IVAPELYIAVGISGAIQHLAG----MKDSKVIVAINKDPDAPIFQVADYGLVGDLFKIVPELTEKLPK 335 (336)
T ss_pred eeccceEEEEeccHHHHHhhc----CccceEEEEecCCCCCCceeeecccchhhHHHHhHHHHHhccC
Confidence 234678899995521111111 1333 3666787776210 0011111 2566667777777754
No 411
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=34.37 E-value=3e+02 Score=24.86 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=26.5
Q ss_pred EEcCCcc-hHHHHHHHHHhHhcCCcEEEEeCCCCCc
Q 009060 94 VVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSN 128 (545)
Q Consensus 94 ~~t~GpG-~~n~~~~l~~A~~~~~Pllvi~g~~~~~ 128 (545)
++.|..| ..+.+..+..|...++|+|.||+.....
T Consensus 106 I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 106 IGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 3334334 4588999999999999999999875544
No 412
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=34.35 E-value=1.1e+02 Score=31.21 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=42.3
Q ss_pred HHHHHHHHHh--cCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhc
Q 009060 225 VEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVES 302 (545)
Q Consensus 225 i~~~~~~l~~--a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~ 302 (545)
++++.+.+.+ .+|++|+.|....... .+.+.+..++.++.+..... .-++.+|-.-.+- .....+.++
T Consensus 11 l~~l~~~~~~~~~~~~livtd~~~~~~~-~~~v~~~l~~~~i~~~~~~~---~~~~~~pt~~~v~------~~~~~~~~~ 80 (348)
T cd08175 11 LERLPEILKEFGYKKALIVADENTYAAA-GKKVEALLKRAGVVVLLIVL---PAGDLIADEKAVG------RVLKELERD 80 (348)
T ss_pred HHHHHHHHHhcCCCcEEEEECCcHHHHH-HHHHHHHHHHCCCeeEEeec---CCCcccCCHHHHH------HHHHHhhcc
Confidence 3444444443 4788999887765433 57788888888885532111 1112234332210 111222237
Q ss_pred CCEEEEeCC
Q 009060 303 ADAYVFVGP 311 (545)
Q Consensus 303 aD~vl~lG~ 311 (545)
+|+||.||.
T Consensus 81 ~d~IIaIGG 89 (348)
T cd08175 81 TDLIIAVGS 89 (348)
T ss_pred CCEEEEECC
Confidence 999999996
No 413
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=34.25 E-value=3.2e+02 Score=23.84 Aligned_cols=98 Identities=13% Similarity=0.048 Sum_probs=66.3
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecC--chhHHHHHHhHHhhhcC-ceEEEEcCCc-
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCC--NELNAGYAADGYARSRG-VGACVVTFTV- 99 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~--hE~~A~~~A~gyar~tg-~gv~~~t~Gp- 99 (545)
....+.-+.+++.|.+.|++.|+-+.+.. .+...+.+ .++++|... ....+..+..|.....+ -.++++..--
T Consensus 21 i~g~~li~~~l~~l~~~~~~~Ivvv~~~~--~~~~~~~~-~~~~~v~~~~~~~G~~~sl~~a~~~~~~~~~vlv~~~D~p 97 (160)
T PF12804_consen 21 IGGKPLIERVLEALREAGVDDIVVVTGEE--EIYEYLER-YGIKVVVDPEPGQGPLASLLAALSQLPSSEPVLVLPCDQP 97 (160)
T ss_dssp ETTEEHHHHHHHHHHHHTESEEEEEESTH--HHHHHHTT-TTSEEEE-STSSCSHHHHHHHHHHTSTTSSEEEEEETTET
T ss_pred ECCccHHHHHHHHhhccCCceEEEecChH--HHHHHHhc-cCceEEEeccccCChHHHHHHHHHhcccCCCcEEEeCCcc
Confidence 35678899999999999999999998883 55555544 468888776 45556666667666634 4555555444
Q ss_pred c-hHHHHHHHHHhHh-cCCcEEEEeCC
Q 009060 100 G-GLSVLNAIAGAYS-ENLPVICIVGG 124 (545)
Q Consensus 100 G-~~n~~~~l~~A~~-~~~Pllvi~g~ 124 (545)
- -.+.+..+.+++. +..++++.+-+
T Consensus 98 ~~~~~~l~~l~~~~~~~~~~i~~~~~~ 124 (160)
T PF12804_consen 98 FLSPELLRRLLEALEKSPADIVVPVFR 124 (160)
T ss_dssp TS-HHHHHHHHHHHHHTTTSEEEEEET
T ss_pred ccCHHHHHHHHHHHhccCCcEEEEEEC
Confidence 3 3577888888876 35556655543
No 414
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=34.24 E-value=67 Score=30.64 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHhc-CCCEEEcCccccccchHHHHHHHHHHhCCce
Q 009060 221 LEAAVEATADFLNKA-VKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a-~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv 266 (545)
..+.++...+++..+ .|+.|++|+|+.. +.+.+|.+++|+--
T Consensus 154 a~eg~~~l~~li~~a~gri~Im~GaGV~~----~N~~~l~~~tg~~e 196 (241)
T COG3142 154 ALEGLDLLKRLIEQAKGRIIIMAGAGVRA----ENIAELVLLTGVTE 196 (241)
T ss_pred hhhhHHHHHHHHHHhcCCEEEEeCCCCCH----HHHHHHHHhcCchh
Confidence 345677888888877 7999999999953 66777888777643
No 415
>PRK02399 hypothetical protein; Provisional
Probab=34.06 E-value=5.8e+02 Score=26.80 Aligned_cols=181 Identities=15% Similarity=0.149 Sum_probs=89.1
Q ss_pred CccHHHHHHHHHHHcCCC-EEEecCCCChHHHHHhhhcCCCCeEE--ecCchhHHHHHHhHHhhhcCceEEEEcCCcchH
Q 009060 26 VGTLGRHLARRLVEIGAK-DVFSVPGDFNLTLLDHLIAEPELNLV--GCCNELNAGYAADGYARSRGVGACVVTFTVGGL 102 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~-~vFg~pG~~~~~l~~al~~~~~i~~i--~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~ 102 (545)
.....+.+.+.|++.|.+ .||=-.|.. -.-++.|.++..+.-| .+.+|-+==. .- |+ ...||.
T Consensus 197 Ttp~v~~~~~~Le~~GyEvlVFHATG~G-GraME~Li~~G~~~gVlDlTttEv~d~l-~G--------Gv--~sagp~-- 262 (406)
T PRK02399 197 TTPCVQAAREELEARGYEVLVFHATGTG-GRAMEKLIDSGLIAGVLDLTTTEVCDEL-FG--------GV--LAAGPD-- 262 (406)
T ss_pred cHHHHHHHHHHHHhCCCeEEEEcCCCCc-hHHHHHHHHcCCceEEEEcchHHHHHHH-hC--------cC--ccCCcc--
Confidence 346778888899998876 345444433 2245556555455555 3555542111 00 11 134554
Q ss_pred HHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHh--hhceeEEEEeC----ChhhHHHHHHHHH
Q 009060 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCF--QAITCSQAVVN----NLGDAHELIDTAI 176 (545)
Q Consensus 103 n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~k~~~~v~----~~~~~~~~l~~A~ 176 (545)
=+..|-..++|.|+..|.-+--..|.. ++.. +-| |++-+++-.++ ++++..++= +.+
T Consensus 263 ----Rl~Aa~~~gIP~Vvs~GalDmVnFg~~----------~tvP--e~f~~R~~~~HNp~vTlmRTt~eE~~~~g-~~i 325 (406)
T PRK02399 263 ----RLEAAARTGIPQVVSPGALDMVNFGAP----------DTVP--EKFRGRLLYKHNPQVTLMRTTPEENRQIG-RWI 325 (406)
T ss_pred ----HHHHHHHcCCCEEecCCceeeeecCCc----------cccc--HhhcCCcceecCCcceeeecCHHHHHHHH-HHH
Confidence 234455678998888876443322211 1110 011 22223332222 566554432 223
Q ss_pred HHhhh-CCCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccc
Q 009060 177 STALK-ESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRV 248 (545)
Q Consensus 177 ~~a~~-~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~ 248 (545)
..-++ .+|||.+-||..=... ...+-.++ .++..+...++.+.+.| ...++++-.-.-...
T Consensus 326 a~kLn~a~gpv~vllP~~G~S~----~D~~G~~f------~Dpead~alf~~l~~~l-~~~~~v~~~~~hIND 387 (406)
T PRK02399 326 AEKLNRAKGPVAFLIPLGGVSA----LDRPGQPF------HDPEADAAFFDALEETV-TETRRLIEVPAHIND 387 (406)
T ss_pred HHHHhcCCCCeEEEEeCCCCcc----ccCCCCCc------cChhHHHHHHHHHHHhC-CCCceEEECCCCCCC
Confidence 22223 4899999999763221 00001111 11233555666666666 566777755554443
No 416
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=34.04 E-value=1.1e+02 Score=29.77 Aligned_cols=75 Identities=15% Similarity=0.163 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhc--CCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh
Q 009060 223 AAVEATADFLNKA--VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (545)
Q Consensus 223 ~~i~~~~~~l~~a--~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l 300 (545)
..+..|++.|..- ..-++++|... .+...+.++|+++|.+.++.-- +| |.+.+. ....+
T Consensus 56 ~~L~~Aa~~i~~i~~~~~Il~Vstr~---~~~~~V~k~A~~tg~~~i~~Rw----~p-----------GtlTN~-~~~~f 116 (249)
T PTZ00254 56 EKLKLAARVIAAIENPADVVVVSSRP---YGQRAVLKFAQYTGASAIAGRF----TP-----------GTFTNQ-IQKKF 116 (249)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEcCH---HHHHHHHHHHHHhCCeEECCcc----cC-----------CCCCCc-ccccc
Confidence 3566666666543 33467776543 4778999999999998875421 11 222221 12334
Q ss_pred hcCCEEEEeCCCCCCC
Q 009060 301 ESADAYVFVGPIFNDY 316 (545)
Q Consensus 301 ~~aD~vl~lG~~~~~~ 316 (545)
..+|+||++..+-+..
T Consensus 117 ~~P~llIV~Dp~~d~q 132 (249)
T PTZ00254 117 MEPRLLIVTDPRTDHQ 132 (249)
T ss_pred CCCCEEEEeCCCcchH
Confidence 7899999998665433
No 417
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=34.02 E-value=35 Score=28.31 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=27.7
Q ss_pred CCCEEEcCccccccchHHHHHHHHHHhCCceE
Q 009060 236 VKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (545)
Q Consensus 236 ~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~ 267 (545)
+|.++++|.|...+-..+.++++++..|+++-
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~ 33 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIE 33 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceE
Confidence 46789999999877778899999999999874
No 418
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=33.89 E-value=10 Score=37.33 Aligned_cols=143 Identities=17% Similarity=0.139 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHH--HHHhhhcCCCCeEEecC----------chhHHHHHHhHHhhhcC-ceEEEE
Q 009060 29 LGRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLIAEPELNLVGCC----------NELNAGYAADGYARSRG-VGACVV 95 (545)
Q Consensus 29 ~a~~i~~~L~~~GV~~vFg~pG~~~~~--l~~al~~~~~i~~i~~~----------hE~~A~~~A~gyar~tg-~gv~~~ 95 (545)
=..+.++.+.+.|.+.|.-.-+...+. +.+.|. +..++|... +|..-+.+=.||--..| ...++.
T Consensus 38 evnAaiega~~aGa~eIvV~DsHg~~~Nl~~e~L~--~~a~LI~G~prp~~Mm~Gld~s~D~v~fiGYHa~aG~~~gvl~ 115 (270)
T cd08769 38 ELNAVLEELFESGFEEIVVADSHGRMDNIDYEELD--PRVSLVSGYPRPLSMMTGLDESFDAVLFIGYHAGAGTPKGIMD 115 (270)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCCCcCCCChHHCC--cceEEEecCCCCchHhhccccCccEEEEEecCCCCCCCCCccc
Confidence 346778999999999999887644332 334443 456666433 33333333346655555 333333
Q ss_pred cCCcch------------HHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeC
Q 009060 96 TFTVGG------------LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN 163 (545)
Q Consensus 96 t~GpG~------------~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~ 163 (545)
|+-.|. ....-.-+-|-.-++||+++|||......-+. .+ ++ ...+..=+.+.+++....
T Consensus 116 HT~s~~~~~~v~iNG~~~gE~~lNa~~Ag~~gVPV~lVsGDd~~~~ea~~-----~~--P~-~~tv~vK~~~gr~aA~~~ 187 (270)
T cd08769 116 HTYSGSTIYNIWINGKEMNETLINAAYAGEFGVPVVLVAGDSELEKEVKE-----ET--PW-AVFVPTKESLSRYSAKSP 187 (270)
T ss_pred cccccCceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHH-----hC--CC-ceEEEEeeecCCCccccC
Confidence 443332 11111222344569999999998533211110 00 00 001122233445667777
Q ss_pred ChhhHHHHHHHHHHHhhh
Q 009060 164 NLGDAHELIDTAISTALK 181 (545)
Q Consensus 164 ~~~~~~~~l~~A~~~a~~ 181 (545)
+|+++.+.|+++.+.|..
T Consensus 188 ~p~~a~~~I~~aa~~Al~ 205 (270)
T cd08769 188 SMKKVKEELREAVKEALE 205 (270)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 888888888888887763
No 419
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=33.83 E-value=84 Score=25.88 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=39.7
Q ss_pred CCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCC
Q 009060 236 VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPI 312 (545)
Q Consensus 236 ~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~ 312 (545)
++.++++..|...+=-....++.|+.-|..+.-.-. +.....+.+.+.|++| +|..
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~--------------------s~~e~~~~~~~~DvvL-lGPQ 57 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAY--------------------SETELSEYIDNADVVL-LGPQ 57 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEe--------------------chhHHHHhhhcCCEEE-EChH
Confidence 456889999988777788999999997777753211 2235667778999655 5643
No 420
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=33.73 E-value=1.3e+02 Score=25.81 Aligned_cols=86 Identities=19% Similarity=0.117 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhcCC--CEEEcCcccccc-----------chHHHHHHHHHHhCCceEeCC---CCccCCCCC------
Q 009060 222 EAAVEATADFLNKAVK--PVLVGGPNIRVA-----------KAQKAFIELADATGYPIAIMP---SGKGLVPEH------ 279 (545)
Q Consensus 222 ~~~i~~~~~~l~~a~r--pvi~~G~g~~~~-----------~a~~~l~~lae~~~~Pv~tt~---~~kg~~~~~------ 279 (545)
.+.++-+...+..... -+++.+.|+... ...+.+++|.+..++++.... ..||+.+++
T Consensus 17 ~~al~~A~aa~~~gh~v~~vFf~~DgV~~a~~~q~p~~~~~n~~~~~~~L~~~~~i~l~vC~~aa~~RGl~~~~~~~~~~ 96 (127)
T TIGR03012 17 SSAYQFAQALLAKGHEIVRVFFYQDGVLNANNLVSPASDEFDLVAAWQQLAQEHQVDLVVCVAAALRRGVVDEEEASRLQ 96 (127)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEehHHHHhhccCCCCccccccHHHHHHHHHHhcCCEEEeeHHHHHHcCCCchhHHhhcc
Confidence 4455555555655454 488888888532 235678888888899887753 357877652
Q ss_pred ---CCCccceecCCCCCHHHHHHhhcCCEEEEe
Q 009060 280 ---HPHFIGTYWGAVSSSFCGEIVESADAYVFV 309 (545)
Q Consensus 280 ---hpl~~G~~~G~~~~~~~~~~l~~aD~vl~l 309 (545)
..+..|.- ..+.....+.+.++|.||.+
T Consensus 97 ~~~~~l~~~~~--i~~l~eL~~~~~~aDrvi~F 127 (127)
T TIGR03012 97 ISHGNLAPGFE--LSGLGELAEAALTADRLVQF 127 (127)
T ss_pred cccccccCCeE--EcCHHHHHHHHHhCCeeEeC
Confidence 14444431 23445778889999999864
No 421
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=33.47 E-value=1e+02 Score=27.26 Aligned_cols=53 Identities=13% Similarity=0.190 Sum_probs=38.4
Q ss_pred hhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchh
Q 009060 443 WSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYT 497 (545)
Q Consensus 443 ~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~~g 497 (545)
.+..+|-|.+.+ .++|++++---++...+..|.++...+.|+++|+-+....+
T Consensus 52 ~A~~~A~g~~r~--~~~v~~~~~gpG~~n~~~~l~~a~~~~~P~v~i~g~~~~~~ 104 (160)
T cd07034 52 AAAEAAIGASAA--GARAMTATSGPGLNLMAEALYLAAGAELPLVIVVAQRPGPS 104 (160)
T ss_pred HHHHHHHHHHhh--CCcEEEeeCcchHHHHHHHHHHHHhCCCCEEEEEeeCCCCC
Confidence 356677777765 33465555555677788999999999999999998766543
No 422
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=33.39 E-value=1.5e+02 Score=30.85 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=43.4
Q ss_pred HHHHHHHHHh-----cCCCEEEcCccccc-cchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHH
Q 009060 225 VEATADFLNK-----AVKPVLVGGPNIRV-AKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGE 298 (545)
Q Consensus 225 i~~~~~~l~~-----a~rpvi~~G~g~~~-~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~ 298 (545)
++++.+.+.+ .||++|+.|..... .+..+.+.+..++.|+.+..- . ++ +.+|-.-.+ ....+
T Consensus 11 ~~~l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f-~--~v--~~~p~~~~v-------~~~~~ 78 (383)
T cd08186 11 IEKIGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLY-N--KV--TPNPTVDQV-------DEAAK 78 (383)
T ss_pred HHHHHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEe-C--CC--CCCCCHHHH-------HHHHH
Confidence 3444445543 48899999877543 556788888888888865421 1 11 223332111 11222
Q ss_pred Hh--hcCCEEEEeCC
Q 009060 299 IV--ESADAYVFVGP 311 (545)
Q Consensus 299 ~l--~~aD~vl~lG~ 311 (545)
.+ .++|+||.||.
T Consensus 79 ~~~~~~~D~IIaiGG 93 (383)
T cd08186 79 LGREFGAQAVIAIGG 93 (383)
T ss_pred HHHHcCCCEEEEeCC
Confidence 22 36899999996
No 423
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=32.90 E-value=1.5e+02 Score=30.53 Aligned_cols=72 Identities=15% Similarity=0.258 Sum_probs=40.6
Q ss_pred HHHHHHHHHh--cCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh--
Q 009060 225 VEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV-- 300 (545)
Q Consensus 225 i~~~~~~l~~--a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l-- 300 (545)
++++.+.+.+ .+|++|+.|.+.. ..+.+.+..++.++.+..-... +.+|-.-.+ ..+.+.+
T Consensus 11 l~~l~~~~~~~g~~~~livtd~~~~---~~~~~~~~l~~~~~~~~~~~~~-----~~~p~~~~v-------~~~~~~~~~ 75 (367)
T cd08182 11 IAKLPSLLKGLGGKRVLLVTGPRSA---IASGLTDILKPLGTLVVVFDDV-----QPNPDLEDL-------AAGIRLLRE 75 (367)
T ss_pred HHHHHHHHHhcCCCeEEEEeCchHH---HHHHHHHHHHHcCCeEEEEcCc-----CCCcCHHHH-------HHHHHHHHh
Confidence 4555566654 4889999988775 4455666667777655321100 123332211 1222222
Q ss_pred hcCCEEEEeCC
Q 009060 301 ESADAYVFVGP 311 (545)
Q Consensus 301 ~~aD~vl~lG~ 311 (545)
.++|+||.||.
T Consensus 76 ~~~D~IIavGG 86 (367)
T cd08182 76 FGPDAVLAVGG 86 (367)
T ss_pred cCcCEEEEeCC
Confidence 36899999996
No 424
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=32.84 E-value=65 Score=27.20 Aligned_cols=42 Identities=17% Similarity=0.311 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEe
Q 009060 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVG 70 (545)
Q Consensus 28 ~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~ 70 (545)
.-...+++.+.+.|++.+...||.....+.+.+++ .+++++.
T Consensus 66 ~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~-~gi~vig 107 (116)
T PF13380_consen 66 DKVPEIVDEAAALGVKAVWLQPGAESEELIEAARE-AGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHH-TT-EEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHH-cCCEEEe
Confidence 34456778888889999999999998889988876 4888874
No 425
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=32.65 E-value=80 Score=33.82 Aligned_cols=87 Identities=21% Similarity=0.147 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHH-hCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHH
Q 009060 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA-TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~-~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~ 299 (545)
.+++++++++.|++.+.-+.+.|.+....+....+.+|++. ++.+-+... +...+.. .+... +..+. .. .-
T Consensus 71 WdeAl~~ia~~l~~~~~~~~~~~s~~~~~e~~~~~~~~~~~~~gs~~~~~~-~~~~~~~----~~~~~-~~~~~-~~-~d 142 (472)
T cd02771 71 WNEALDVAAARLKEAKDKVGGIGSPRASNESNYALQKLVGAVLGTNNVDHR-ARRLIAE----ILRNG-PIYIP-SL-RD 142 (472)
T ss_pred HHHHHHHHHHHHHHhhhhEEEEecCCCChHHHHHHHHHHHHhcCCChhhcc-hhhhhhh----hhccc-CCCCC-CH-HH
Confidence 57788999999988763344444433222344567788875 665543211 1110000 00000 11111 12 23
Q ss_pred hhcCCEEEEeCCCCCC
Q 009060 300 VESADAYVFVGPIFND 315 (545)
Q Consensus 300 l~~aD~vl~lG~~~~~ 315 (545)
+.++|+||++|+.+.+
T Consensus 143 i~~ad~il~~G~n~~~ 158 (472)
T cd02771 143 IESADAVLVLGEDLTQ 158 (472)
T ss_pred HHhCCEEEEEeCCccc
Confidence 5799999999988643
No 426
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=32.62 E-value=2.4e+02 Score=28.20 Aligned_cols=102 Identities=16% Similarity=0.007 Sum_probs=59.5
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCC-------CCeEEecCchhHH-----------H-HHHhHHhhh
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP-------ELNLVGCCNELNA-----------G-YAADGYARS 87 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~-------~i~~i~~~hE~~A-----------~-~~A~gyar~ 87 (545)
-..++.+++.|++.|-=++||.-++.....+|+..-.+ .+..+..-.+.+. . +..+=.+..
T Consensus 45 ~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~~~a~~~~ed~~~~~~~~l~a~~ 124 (296)
T PRK12570 45 AQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAVEGAEDDPELGAQDLKAIG 124 (296)
T ss_pred HHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCCcccceeeeecCchHhhhcccccCCcHHHHHHHHHHcC
Confidence 34567788999999888888888787777777654211 1222222221111 1 111111111
Q ss_pred -cCceEEEEcCCcc-hHHHHHHHHHhHhcCCcEEEEeCCCCCc
Q 009060 88 -RGVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSN 128 (545)
Q Consensus 88 -tg~gv~~~t~GpG-~~n~~~~l~~A~~~~~Pllvi~g~~~~~ 128 (545)
+---+++..+..| ..+.+.++..|...+.+++.||+.....
T Consensus 125 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~ 167 (296)
T PRK12570 125 LTADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSP 167 (296)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 1123333344444 4467788888999999999999976554
No 427
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=32.37 E-value=47 Score=35.70 Aligned_cols=115 Identities=16% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh------cCCCEEEcCccccccchHHHHH-HHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCH
Q 009060 222 EAAVEATADFLNK------AVKPVLVGGPNIRVAKAQKAFI-ELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSS 294 (545)
Q Consensus 222 ~~~i~~~~~~l~~------a~rpvi~~G~g~~~~~a~~~l~-~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~ 294 (545)
+++++.+++.|++ .+...++.|.+........... +|+..+|.+.+.........+....+.... |.....
T Consensus 76 deAl~~ia~~l~~~~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~c~~~~~~~~~~~~--G~~~~~ 153 (477)
T cd02759 76 DEALDEIAEKLAEIKAEYGPESIATAVGTGRGTMWQDSLFWIRFVRLFGSPNLFLSGESCYWPRDMAHALTT--GFGLGY 153 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEEeccCCCccccchhHHHHHHHHhcCCCcccCCcccchHHHHHHHHHhh--ccCCCC
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCcc-cccccCC----CCCcEEEEcCCcce
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSS-VGYSLLI----KKEKAIIVQPHRVT 339 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~-~~~~~~~----~~~~~i~id~d~~~ 339 (545)
...++- +||+||++|+.+.+... ..+..+. ++.|+|.||+....
T Consensus 154 ~~~d~~-~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr~s~ 202 (477)
T cd02759 154 DEPDWE-NPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPRLTW 202 (477)
T ss_pred Cchhhh-cCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCCCCh
No 428
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=32.27 E-value=1.3e+02 Score=25.44 Aligned_cols=83 Identities=14% Similarity=0.105 Sum_probs=50.3
Q ss_pred chHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCC-CCCcccccccCCCCC
Q 009060 250 KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIF-NDYSSVGYSLLIKKE 328 (545)
Q Consensus 250 ~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~-~~~~~~~~~~~~~~~ 328 (545)
=+.+.|++-+++.|+.+....+|...+ .++ ...+-+..+|+||++|... .+.. . +.+.
T Consensus 20 lAAeaL~kAA~~~G~~i~VE~qg~~g~--~~~-------------lt~~~i~~Ad~VIia~d~~~~~~~-----r-F~gk 78 (114)
T PRK10427 20 MAAERLEKLCQLEKWGVKIETQGALGT--ENR-------------LTDEDIRRADVVLLITDIELAGAE-----R-FEHC 78 (114)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCcCc--CCC-------------CCHHHHHhCCEEEEEecCCCCchh-----h-hCCC
Confidence 367899999999999998766653211 111 1234568999999999764 2221 1 2344
Q ss_pred cEEEEcCCcceecCCCccccccHHHHHHHHHHHh
Q 009060 329 KAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKL 362 (545)
Q Consensus 329 ~~i~id~d~~~~~~~~~~~~~d~~~~l~~L~~~l 362 (545)
++++++.+.. + -|+..+|++..+.+
T Consensus 79 ~v~~~s~~~a-i--------~d~~~vl~~a~~~~ 103 (114)
T PRK10427 79 RYVQCSIYAF-L--------REPQRVMSAVRKVL 103 (114)
T ss_pred eEEEecHHHH-H--------HHHHHHHHHHHHHH
Confidence 6666655432 1 14566776665544
No 429
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=31.44 E-value=48 Score=34.76 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCccccccchHHHHH----HHHHHhCC
Q 009060 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFI----ELADATGY 264 (545)
Q Consensus 222 ~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~----~lae~~~~ 264 (545)
.+.+.++++.|..+++++|+.|.|..+......+. .|...+|.
T Consensus 238 ~~~i~~~a~~l~~a~~~~i~~G~g~~~~~~~~~~~~~i~~L~~~tg~ 284 (414)
T cd02772 238 SEEARKIAASLVSAERAAVFLGNLAQNHPQAATLRALAQEIAKLTGA 284 (414)
T ss_pred HHHHHHHHHHHhcCCCeEEEEccchhcCcchHHHHHHHHHHHHHHCc
Confidence 55788999999999999999999886544333333 44555553
No 430
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=31.32 E-value=2.2e+02 Score=28.48 Aligned_cols=101 Identities=21% Similarity=0.026 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCC-------CCeEEecCchhHHH-----------H-HHhHHhh-h
Q 009060 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP-------ELNLVGCCNELNAG-----------Y-AADGYAR-S 87 (545)
Q Consensus 28 ~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~-------~i~~i~~~hE~~A~-----------~-~A~gyar-~ 87 (545)
...+.+++.|++.|-=++||.-++....++|+.+..+ .+..+..-.+.+.. . ..+=.+. .
T Consensus 50 ~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e~~ed~~~~~~~~l~~~~l 129 (299)
T PRK05441 50 AAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDAELGAADLKAINL 129 (299)
T ss_pred HHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhcccccCChHHHHHHHHHhcCC
Confidence 3457788889888887888887777777777654322 12222221111111 1 1111111 2
Q ss_pred cCceEEEEcCCcch-HHHHHHHHHhHhcCCcEEEEeCCCCCc
Q 009060 88 RGVGACVVTFTVGG-LSVLNAIAGAYSENLPVICIVGGPNSN 128 (545)
Q Consensus 88 tg~gv~~~t~GpG~-~n~~~~l~~A~~~~~Pllvi~g~~~~~ 128 (545)
+.--+++..|..|- -+.+.++..|...+.+++.||+...+.
T Consensus 130 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~ 171 (299)
T PRK05441 130 TAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSP 171 (299)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 22234444455554 457788888999999999999876554
No 431
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=31.28 E-value=1.3e+02 Score=31.94 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCC
Q 009060 223 AAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (545)
Q Consensus 223 ~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (545)
..+.+++..+.+..+.+.++.....+..+.++++.+++++++|++...
T Consensus 110 TtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~ 157 (437)
T PRK00771 110 TTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDP 157 (437)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecC
Confidence 345556666665545555555566666788999999999999987543
No 432
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=30.70 E-value=78 Score=34.63 Aligned_cols=114 Identities=12% Similarity=0.072 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHhc------CCCEEEcCccccc-cchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccc---eecCC
Q 009060 221 LEAAVEATADFLNKA------VKPVLVGGPNIRV-AKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIG---TYWGA 290 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a------~rpvi~~G~g~~~-~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G---~~~G~ 290 (545)
-+++++.+++.|++. +...++.|.+... .........|...+|.+-+-+. +... ..+...+ .+ |.
T Consensus 71 WdeAl~~ia~kl~~i~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~lG~~~~~~~---~~~~-~~~~~~~~~~~~-G~ 145 (539)
T cd02762 71 WDEAFDEIAERLRAIRARHGGDAVGVYGGNPQAHTHAGGAYSPALLKALGTSNYFSA---ATAD-QKPGHFWSGLMF-GH 145 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEecCcccccchHHHHHHHHHHHhCCCccccc---cchh-hhHHHHHHHHhc-CC
Confidence 467788888888643 3445555554332 1111223466677776532211 0000 0010000 11 11
Q ss_pred CCCHHHHHHhhcCCEEEEeCCCCCCCcccccc------c----CCCCCcEEEEcCCccee
Q 009060 291 VSSSFCGEIVESADAYVFVGPIFNDYSSVGYS------L----LIKKEKAIIVQPHRVTV 340 (545)
Q Consensus 291 ~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~------~----~~~~~~~i~id~d~~~~ 340 (545)
..... ..-+.++|+||++|+...+.....+. . .-++.|+|.||+...+.
T Consensus 146 ~~~~~-~~D~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDPr~t~t 204 (539)
T cd02762 146 PGLHP-VPDIDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDPRRTET 204 (539)
T ss_pred CCCCC-chhhhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECCCCchh
Confidence 11111 12357899999999885433211111 1 12456899999877644
No 433
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=30.19 E-value=75 Score=34.02 Aligned_cols=44 Identities=27% Similarity=0.201 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCc
Q 009060 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (545)
Q Consensus 222 ~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~P 265 (545)
.+.+.+++++|.++++++|+.|.|.........+..|+..+|-.
T Consensus 252 ~~~i~~lA~~l~~a~~~~i~~g~g~~~~~~~~al~~L~~~~G~~ 295 (472)
T cd02771 252 KEKAARIAARLTGAKKPLIVSGTLSGSLELIKAAANLAKALKRR 295 (472)
T ss_pred HHHHHHHHHHHhcCCCcEEEECCCcCcHHHHHHHHHHHHHhcCC
Confidence 46788999999999999999998875445667777788877664
No 434
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=30.15 E-value=2.3e+02 Score=29.78 Aligned_cols=97 Identities=12% Similarity=0.135 Sum_probs=56.5
Q ss_pred cCHHHHHHHHHhhC-----CCCCEEEecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEc
Q 009060 391 LRVNVLFKHIQDML-----SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIG 465 (545)
Q Consensus 391 ~~~~~~~~~l~~~l-----~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~G 465 (545)
..+..++..+.+.+ ....++++..++.-. . .+.+|+++.+.|.||.+++-++- ..+..|+++.|
T Consensus 168 ~~~~~I~~~~~~~~~~~~l~gk~vlITgG~T~E~-I------D~VR~isN~SSG~~G~aiA~~l~----~~Ga~V~~v~~ 236 (399)
T PRK05579 168 AEPEEIVAAAERALSPKDLAGKRVLITAGPTREP-I------DPVRYITNRSSGKMGYALARAAA----RRGADVTLVSG 236 (399)
T ss_pred CCHHHHHHHHHHHhhhcccCCCEEEEeCCCcccc-c------cceeeeccCCcchHHHHHHHHHH----HCCCEEEEeCC
Confidence 45666666666554 334455554443211 1 35569999998989888777664 34567888887
Q ss_pred chhhc----------ccHHHHHHHHHhCCCeEEEEEeCCchhh
Q 009060 466 DGSFQ----------VTAQEISTMIRCGQRSIIFLINNGGYTI 498 (545)
Q Consensus 466 DGsf~----------~~~~eL~ta~~~~lpi~ivV~NN~~~g~ 498 (545)
+.+.. -+..++..+++...+-.=+++||.+..-
T Consensus 237 ~~~~~~~~~~~~~dv~~~~~~~~~v~~~~~~~DilI~~Aav~d 279 (399)
T PRK05579 237 PVNLPTPAGVKRIDVESAQEMLDAVLAALPQADIFIMAAAVAD 279 (399)
T ss_pred CccccCCCCcEEEccCCHHHHHHHHHHhcCCCCEEEEcccccc
Confidence 75421 1345666665544433345666766543
No 435
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=30.05 E-value=3.3e+02 Score=25.44 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhc-CCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhh
Q 009060 223 AAVEATADFLNKA-VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVE 301 (545)
Q Consensus 223 ~~i~~~~~~l~~a-~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~ 301 (545)
..+++|++.+.+- .+-++++|..- .+...++++|++.|.+.++.-- +| |.+.+.. ..-..
T Consensus 47 ~~L~~A~~~i~~i~~~~ILfVgtk~---~~~~~V~~~A~~~g~~~v~~RW------------lg---GtLTN~~-~~~~~ 107 (196)
T TIGR01012 47 ERLRVAAKFLVRIEPEDILVVSARI---YGQKPVLKFAKVTGARAIAGRF------------TP---GTFTNPM-QKAFR 107 (196)
T ss_pred HHHHHHHHHHHHhhCCeEEEEecCH---HHHHHHHHHHHHhCCceECCee------------CC---CCCCCcc-ccccC
Confidence 4567777766542 44577777543 4678899999999999976421 11 2222211 12246
Q ss_pred cCCEEEEeCCCCC
Q 009060 302 SADAYVFVGPIFN 314 (545)
Q Consensus 302 ~aD~vl~lG~~~~ 314 (545)
.+|+||+++..-+
T Consensus 108 ~Pdlliv~dp~~~ 120 (196)
T TIGR01012 108 EPEVVVVTDPRAD 120 (196)
T ss_pred CCCEEEEECCccc
Confidence 8999999986544
No 436
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=30.02 E-value=4.1e+02 Score=24.59 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=23.1
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCC
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDF 52 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~ 52 (545)
...++.|++.+++.||+.|+.+-|-.
T Consensus 33 ~e~a~~vld~a~~~gv~~iitLgG~~ 58 (188)
T TIGR00162 33 YELVNAIIDVAKKYGARMIYTLGGYG 58 (188)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCc
Confidence 35899999999999999999998854
No 437
>PRK10586 putative oxidoreductase; Provisional
Probab=29.84 E-value=1.7e+02 Score=30.21 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=24.9
Q ss_pred HHHHHHHHHHh--cCCCEEEcCccccccchHHHHHHHHHHhCCc
Q 009060 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (545)
Q Consensus 224 ~i~~~~~~l~~--a~rpvi~~G~g~~~~~a~~~l~~lae~~~~P 265 (545)
.++++.+.+++ .+|++|+.|..... ...+.+.+..++.++.
T Consensus 21 a~~~l~~~~~~~g~~~~lvv~g~~~~~-~~~~~~~~~l~~~~~~ 63 (362)
T PRK10586 21 SIDHLHDFFTDEQLSRAVWIYGERAIA-AAQPYLPPAFELPGAK 63 (362)
T ss_pred HHHHHHHHHHhcCCCeEEEEEChHHHH-HHHHHHHHHHHHcCCe
Confidence 56667777765 47899888876543 2334555555555543
No 438
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=29.64 E-value=1.2e+02 Score=30.47 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCC
Q 009060 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPH 282 (545)
Q Consensus 224 ~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl 282 (545)
..+.+.+++ +.++..+++|... +.....+..++++.++|+++.......+++..|+
T Consensus 55 a~~~~~~li-~~~~v~~iiG~~~--s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~ 110 (344)
T cd06348 55 AINAFQTLI-NKDRVLAIIGPTL--SQQAFAADPIAERAGVPVVGPSNTAKGIPEIGPY 110 (344)
T ss_pred HHHHHHHHh-hhcCceEEECCCC--cHHHHhhhHHHHhCCCCEEeccCCCCCcCCCCCe
Confidence 334444444 4567788888653 3345667789999999999865443334444444
No 439
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=29.35 E-value=54 Score=35.77 Aligned_cols=112 Identities=16% Similarity=0.116 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHhc------CCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccce--ecCCCC
Q 009060 221 LEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGT--YWGAVS 292 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a------~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~--~~G~~~ 292 (545)
-+++++.+++.|++. ++.+++.|..... ....+.+|...+|.|-+.+...-.. .+...|. ..|..+
T Consensus 81 WdeAl~~ia~~l~~~~~~~g~~~i~~~~g~~~~~--~~~~~~r~~~~~Gs~~~~~~~~~c~----~~~~~~~~~~~g~~~ 154 (523)
T cd02757 81 WDEALDTIADKIRALRKENEPHKIMLHRGRYGHN--NSILYGRFTKMIGSPNNISHSSVCA----ESEKFGRYYTEGGWD 154 (523)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEeCCCCCc--cchHHHHHHHHhCcCCCcCCcchhh----hHHHHHHHHHhCCCC
Confidence 467778888877653 2334556654322 2236788999999885433211110 0000111 001111
Q ss_pred CHHHHHHhhcCCEEEEeCCCCCCCccccc--c----cCCCCCcEEEEcCCccee
Q 009060 293 SSFCGEIVESADAYVFVGPIFNDYSSVGY--S----LLIKKEKAIIVQPHRVTV 340 (545)
Q Consensus 293 ~~~~~~~l~~aD~vl~lG~~~~~~~~~~~--~----~~~~~~~~i~id~d~~~~ 340 (545)
.. ..-+.+||+||++|+..-+...... . ...++.|+|.||+.....
T Consensus 155 ~~--~~D~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr~s~t 206 (523)
T cd02757 155 YN--SYDYANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPRLSNT 206 (523)
T ss_pred CC--CcchhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCCCChh
Confidence 00 1235899999999987532211110 1 112567999999876543
No 440
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=28.85 E-value=78 Score=27.38 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhhc
Q 009060 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA 62 (545)
Q Consensus 31 ~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~ 62 (545)
+...+.|++.|++.||+ ||+....+.+.|.+
T Consensus 98 ~~~~~~L~~~Gv~~vf~-pgt~~~~i~~~l~~ 128 (128)
T cd02072 98 EDVEKRFKEMGFDRVFA-PGTPPEEAIADLKK 128 (128)
T ss_pred HHHHHHHHHcCCCEEEC-cCCCHHHHHHHHhC
No 441
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=28.79 E-value=96 Score=37.21 Aligned_cols=116 Identities=9% Similarity=-0.060 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHh------cCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCH
Q 009060 221 LEAAVEATADFLNK------AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSS 294 (545)
Q Consensus 221 ~~~~i~~~~~~l~~------a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~ 294 (545)
-+++++.+++.|.. .++...+.+.+....-......+|...+|.+.+.....-+-.|...|...|.. ...+
T Consensus 162 WDEAldlIAakl~~i~~kYGPdsI~~fs~~~a~s~~s~aa~~Rfl~llGg~~~~~~d~~Cd~p~a~p~v~G~~---t~~~ 238 (1235)
T TIGR01580 162 WQEVNELIAASNVYTVKNYGPDRVVGFSPIPAMSMVSYASGSRYLSLIGGTCLSFYDWYCDLPPASPQTWGEQ---TDVP 238 (1235)
T ss_pred HHHHHHHHHHHHHHHHHHhCcceEEEecCCCcccchhhHHHHHHHHhcCCccccCCCCcchhhHHhHhheecC---CCCC
Confidence 45566666665542 33433333333221111223357888999886653322222233344444421 1111
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCccccccc----CCCCCcEEEEcCCccee
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVTV 340 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~~~~ 340 (545)
... -+.++|+||++|+......+..+.. ..++.|+|.||++....
T Consensus 239 e~~-D~~nS~~II~WGsN~~~T~~p~a~~l~eAr~rGaKvVVVDPr~t~t 287 (1235)
T TIGR01580 239 ESA-DWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEI 287 (1235)
T ss_pred Cch-hhhcCCEEEEECCChhhhcchhHHHHHHHHHcCCeEEEEcCCCChh
Confidence 111 2468999999998864432211111 12467999999988654
No 442
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=28.75 E-value=1.2e+02 Score=29.85 Aligned_cols=69 Identities=12% Similarity=0.113 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh
Q 009060 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l 300 (545)
+.+.+++++++|.+|+| +.+.|.| ........+...-.++|.++.......... .....+
T Consensus 114 ~~~~l~~~~~~i~~a~~-I~i~G~G-~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~------------------~~~~~~ 173 (278)
T PRK11557 114 SEEKLHECVTMLRSARR-IILTGIG-ASGLVAQNFAWKLMKIGINAVAERDMHALL------------------ATVQAL 173 (278)
T ss_pred CHHHHHHHHHHHhcCCe-EEEEecC-hhHHHHHHHHHHHhhCCCeEEEcCChHHHH------------------HHHHhC
Q ss_pred hcCCEEEEe
Q 009060 301 ESADAYVFV 309 (545)
Q Consensus 301 ~~aD~vl~l 309 (545)
.+-|++|++
T Consensus 174 ~~~Dv~I~i 182 (278)
T PRK11557 174 SPDDLLLAI 182 (278)
T ss_pred CCCCEEEEE
No 443
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=28.62 E-value=87 Score=32.82 Aligned_cols=45 Identities=9% Similarity=0.149 Sum_probs=34.4
Q ss_pred hHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEE
Q 009060 444 SVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFL 490 (545)
Q Consensus 444 ~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV 490 (545)
++.+++||+.+ +.+++..+-=.|+.+-.--|..+.-.++|+++++
T Consensus 62 A~~~~~GAs~a--GaRa~TaTS~~Gl~lm~E~l~~aag~~lP~V~vv 106 (394)
T PRK08367 62 AISACVGASAA--GVRTFTATASQGLALMHEVLFIAAGMRLPIVMAI 106 (394)
T ss_pred HHHHHHHHHhh--CCCeEeeeccchHHHHhhHHHHHHHccCCEEEEE
Confidence 67888998887 5567776666666665577888999999988776
No 444
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=28.47 E-value=2.6e+02 Score=23.43 Aligned_cols=77 Identities=18% Similarity=0.014 Sum_probs=38.5
Q ss_pred HHHHHHcCCCEEEecCCCCh---HHHHH---hhhcCCCCeEEecC------chhHHHHHHhHHhhhcCceEEEEcCCcch
Q 009060 34 ARRLVEIGAKDVFSVPGDFN---LTLLD---HLIAEPELNLVGCC------NELNAGYAADGYARSRGVGACVVTFTVGG 101 (545)
Q Consensus 34 ~~~L~~~GV~~vFg~pG~~~---~~l~~---al~~~~~i~~i~~~------hE~~A~~~A~gyar~tg~gv~~~t~GpG~ 101 (545)
++.|++.|+++|.-+-.+.. .|-.+ +..+.-|++|+... .+.....++..+..+.+|..+-|-+|.=+
T Consensus 20 ~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~sG~Ra 99 (110)
T PF04273_consen 20 LAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPVLAHCRSGTRA 99 (110)
T ss_dssp HHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSEEEE-SCSHHH
T ss_pred HHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECCCChhH
Confidence 45899999999999965432 22222 22233488887543 33333444555666666877777777654
Q ss_pred HHHHHHHHHh
Q 009060 102 LSVLNAIAGA 111 (545)
Q Consensus 102 ~n~~~~l~~A 111 (545)
+. +-++++|
T Consensus 100 ~~-l~~l~~~ 108 (110)
T PF04273_consen 100 SA-LWALAQA 108 (110)
T ss_dssp HH-HHHHHHH
T ss_pred HH-HHHHHhh
Confidence 33 3344433
No 445
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=28.37 E-value=90 Score=32.86 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=37.0
Q ss_pred hHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCc
Q 009060 444 SVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGG 495 (545)
Q Consensus 444 ~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~ 495 (545)
++.+++||+++ +.+++..+-=.||.+-.-.|..++-..+|+++++.+=++
T Consensus 68 A~~~~~GAs~a--GaRa~TaTS~~Gl~lm~E~l~~aa~~~~P~V~~~~~R~~ 117 (407)
T PRK09622 68 AMSACVGAAAA--GGRVATATSSQGLALMVEVLYQASGMRLPIVLNLVNRAL 117 (407)
T ss_pred HHHHHHHHHhh--CcCEEeecCcchHHHHhhHHHHHHHhhCCEEEEEecccc
Confidence 67889999887 566777666666666557788899999997776665553
No 446
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=28.37 E-value=3.7e+02 Score=25.31 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhc-CCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhh
Q 009060 223 AAVEATADFLNKA-VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVE 301 (545)
Q Consensus 223 ~~i~~~~~~l~~a-~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~ 301 (545)
..+.+|++.|..- ..-++++|... .+...+.++|++.|.+.++.- |+| |.+.+... +...
T Consensus 53 ~~L~~A~~~i~~~~~~~ILfVgTk~---~~~~~v~k~A~~~g~~~v~~R------------Wlg---G~LTN~~~-~~~~ 113 (204)
T PRK04020 53 ERIRIAAKFLSRYEPEKILVVSSRQ---YGQKPVQKFAEVVGAKAITGR------------FIP---GTLTNPSL-KGYI 113 (204)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCH---HHHHHHHHHHHHhCCeeecCc------------cCC---CcCcCcch-hccC
Confidence 4567777777653 34466676443 477899999999999987642 111 22222221 2234
Q ss_pred cCCEEEEeCCCCC
Q 009060 302 SADAYVFVGPIFN 314 (545)
Q Consensus 302 ~aD~vl~lG~~~~ 314 (545)
.+|+||++...-+
T Consensus 114 ~Pdliiv~dp~~~ 126 (204)
T PRK04020 114 EPDVVVVTDPRGD 126 (204)
T ss_pred CCCEEEEECCccc
Confidence 8999999997654
No 447
>PRK08285 cobH precorrin-8X methylmutase; Reviewed
Probab=28.27 E-value=1.1e+02 Score=28.86 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcC-CCEEEcCccccccchHHHHHHHHHH-hCCceEeCCCCcc
Q 009060 222 EAAVEATADFLNKAV-KPVLVGGPNIRVAKAQKAFIELADA-TGYPIAIMPSGKG 274 (545)
Q Consensus 222 ~~~i~~~~~~l~~a~-rpvi~~G~g~~~~~a~~~l~~lae~-~~~Pv~tt~~~kg 274 (545)
+..+-++++++.+.+ +|-+++|-=+---++.+.=.+|.+. .++|.++...-||
T Consensus 137 PTAL~~l~~li~~g~~~PalVIG~PVGFV~a~ESKe~L~~~~~~vP~I~~~GrkG 191 (208)
T PRK08285 137 PTALFRLLEMLDAGAPRPAAILGFPVGFVGAAESKDALAADSRGVPYLIVRGRRG 191 (208)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeCCccccHHHHHHHHHhccCCCCEEEEecCCC
Confidence 556778889998775 8999998655433343333334332 4999999887776
No 448
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=28.21 E-value=1.4e+02 Score=25.46 Aligned_cols=49 Identities=22% Similarity=0.224 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCC
Q 009060 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (545)
Q Consensus 222 ~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (545)
+..+.+..+.|.+++---+.+..+-....-.+++.++|+++++|++.-+
T Consensus 58 ~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip 106 (123)
T PF07905_consen 58 EEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIP 106 (123)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeC
Confidence 3346677777777766556655553334577999999999999999744
No 449
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=28.17 E-value=1.4e+02 Score=30.41 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCce
Q 009060 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (545)
Q Consensus 225 i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv 266 (545)
++++.+.+...+|++|+.|..... ...+.+.+..++.|+.+
T Consensus 10 l~~l~~~l~~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~ 50 (344)
T TIGR01357 10 LDQLVEELAEPSKLVIITDETVAD-LYADKLLEALQALGYNV 50 (344)
T ss_pred HHHHHHHhhcCCeEEEEECCchHH-HHHHHHHHHHHhcCCce
Confidence 344455565568899999887754 36677777778877765
No 450
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=28.13 E-value=4.4e+02 Score=29.30 Aligned_cols=160 Identities=17% Similarity=0.058 Sum_probs=97.5
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCC---CChHHHHHhhh---cCCCCeEE-ecCchhHHHHHHhHHhhhcCceEEEEc
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPG---DFNLTLLDHLI---AEPELNLV-GCCNELNAGYAADGYARSRGVGACVVT 96 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG---~~~~~l~~al~---~~~~i~~i-~~~hE~~A~~~A~gyar~tg~gv~~~t 96 (545)
...++.++-.++.|...--+.+-|... +..+.+-+... .+..=++| ....|.+.+.++-|.+.-.|.-..-.|
T Consensus 354 ~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~~gr~i~~GVREf~M~AimNGialhGg~~pyggT 433 (663)
T COG0021 354 IATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYAGRYIHFGVREFAMAAIMNGIALHGGFIPYGGT 433 (663)
T ss_pred cchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCCCCCeeEEeeHHHHHHHHHHhHHHhcCceeecce
Confidence 567778888888887775555555433 33222222211 11112333 467899999999998887762111112
Q ss_pred CCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHH
Q 009060 97 FTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAI 176 (545)
Q Consensus 97 ~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~ 176 (545)
...=.--+-+++--|...+.|++++-...+.. .|.+...| |-++|+..+|.+-. ..+=+|.|..+ ...|+
T Consensus 434 FlvFsdY~r~AiRlaALm~l~~~~V~THDSIg-vGEDGPTH------qPiEqLa~LRaiPN--~~V~RPaD~~E-t~~aw 503 (663)
T COG0021 434 FLVFSDYARPAVRLAALMGLPVIYVFTHDSIG-VGEDGPTH------QPVEQLASLRAIPN--LSVIRPADANE-TAAAW 503 (663)
T ss_pred ehhhHhhhhHHHHHHHhcCCCeEEEEecCcee-cCCCCCCC------CcHHHHHHhhccCC--ceeEecCChHH-HHHHH
Confidence 11113345688888889999999887665443 22221223 45689999998854 23334554444 46889
Q ss_pred HHhhhC-CCcEEEEeCCC
Q 009060 177 STALKE-SKPVYISISCN 193 (545)
Q Consensus 177 ~~a~~~-~GPV~l~iP~d 193 (545)
+.|... .||+.|.+..-
T Consensus 504 ~~Al~~~~gPt~LiltRQ 521 (663)
T COG0021 504 KYALERKDGPTALILTRQ 521 (663)
T ss_pred HHHHhcCCCCeEEEEecC
Confidence 999885 89999988743
No 451
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=28.12 E-value=56 Score=29.82 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=14.5
Q ss_pred HHHHHhhcCCEEEEeCCCCC
Q 009060 295 FCGEIVESADAYVFVGPIFN 314 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~ 314 (545)
.+.+.+++||++|++|+++.
T Consensus 156 ~~~~~~~~~Dl~lviGTSl~ 175 (178)
T PF02146_consen 156 EAIEDAEEADLLLVIGTSLQ 175 (178)
T ss_dssp HHHHHHHH-SEEEEESS-ST
T ss_pred HHHHHHHcCCEEEEEccCcE
Confidence 44557789999999999874
No 452
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=28.08 E-value=89 Score=25.96 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=27.1
Q ss_pred CCCEEEcCccccccchHHHHHHHHHHhCCceEe
Q 009060 236 VKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (545)
Q Consensus 236 ~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~t 268 (545)
+|.++++|.|...+--.+.+++.+++.|+++--
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V 36 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVII 36 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCCEEE
Confidence 568999999998766677888899999998743
No 453
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=28.01 E-value=70 Score=25.31 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=22.8
Q ss_pred CCCEEEcCccccccchHHHHHHHHHHhCCceEeCC
Q 009060 236 VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (545)
Q Consensus 236 ~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (545)
.-|.+++=+.. ...+.++++|++.|+|++...
T Consensus 16 ~aP~VvAKG~g---~~A~~I~~~A~e~~VPi~~~~ 47 (82)
T TIGR00789 16 KAPKVVASGVG---EVAERIIEIAKKHGIPIVEDP 47 (82)
T ss_pred CCCEEEEEeCC---HHHHHHHHHHHHcCCCEEeCH
Confidence 34666643221 367899999999999999754
No 454
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=28.00 E-value=81 Score=35.19 Aligned_cols=114 Identities=15% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh------cCCCEEEcCccccc--cchHHHHHHHHHHhCCce-EeCCCCccCCCCCCCCccceecCCCC
Q 009060 222 EAAVEATADFLNK------AVKPVLVGGPNIRV--AKAQKAFIELADATGYPI-AIMPSGKGLVPEHHPHFIGTYWGAVS 292 (545)
Q Consensus 222 ~~~i~~~~~~l~~------a~rpvi~~G~g~~~--~~a~~~l~~lae~~~~Pv-~tt~~~kg~~~~~hpl~~G~~~G~~~ 292 (545)
+++++.+++.|++ .+...+..|.|... ......+.+|.+.+|.++ .....+.+....-++..+|.. .
T Consensus 81 DeAl~~ia~kl~~i~~~~G~~ai~~~~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~~~~~~~~~~~G~~----~ 156 (617)
T cd02770 81 DEALDTIASELKRIIEKYGNEAIYVNYGTGTYGGVPAGRGAIARLLNLTGGYLNYYGTYSWAQITTATPYTYGAA----A 156 (617)
T ss_pred HHHHHHHHHHHHHHHHHhCchheEeeccccccCccccchHHHHHHHHhcCCccCCCCCccHhHHhhhhceEEecC----C
Q ss_pred CHHHHHHhhcCCEEEEeCCCCCCCccc--ccccCC-----CCCcEEEEcCCcce
Q 009060 293 SSFCGEIVESADAYVFVGPIFNDYSSV--GYSLLI-----KKEKAIIVQPHRVT 339 (545)
Q Consensus 293 ~~~~~~~l~~aD~vl~lG~~~~~~~~~--~~~~~~-----~~~~~i~id~d~~~ 339 (545)
......-+.+||+||++|+...+.... ....+. ++.|+|.||+....
T Consensus 157 ~~~~~~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~t~ 210 (617)
T cd02770 157 SGSSLDDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTD 210 (617)
T ss_pred CCCCHHHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCCCc
No 455
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=27.74 E-value=2.2e+02 Score=28.71 Aligned_cols=114 Identities=11% Similarity=0.078 Sum_probs=69.1
Q ss_pred HHhHHhhhcC-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCC-----------cccCCCcccccccCCC----
Q 009060 80 AADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNS-----------NDYGTNRILHHTIGLP---- 143 (545)
Q Consensus 80 ~A~gyar~tg-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~-----------~~~~~~~~~~~~~~~~---- 143 (545)
+|.|...+.- .-++..+.---+.=++--++-..+-++|-|.+.-.... +...+-.+..+.++..
T Consensus 427 aalgv~~adp~r~vvalsgdydfqfmieelavgaq~k~pyihv~vnnaylglirqaqr~f~mdy~v~laf~nin~~~~~g 506 (592)
T COG3960 427 AALGVCAADPKRNVVAISGDYDFQFLIEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNG 506 (592)
T ss_pred hhhceeecCCCCceEEeecCchHHHHHHHHhhhhcccCceEEEEecchHHHHHHHHHhcCCccceeeehhhccCCccccc
Confidence 4566554443 34444333334555667777788888897776643221 0000000111111100
Q ss_pred ChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 144 DFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 144 ~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
-..|.+...+.+-+.+.++.+|+++...+++|-+.....+-||.+++-.+
T Consensus 507 ygvdhv~v~eglgckairv~~p~e~a~af~~a~~lm~eh~vpvvve~ile 556 (592)
T COG3960 507 YGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQHRVPVVVEVILE 556 (592)
T ss_pred cCccceeehhccCceeEEecChHHhhHHHHHHHHHHHhcCCCeeeehHHH
Confidence 11256778888888899999999999999999888877888999876533
No 456
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=27.65 E-value=1.1e+02 Score=30.77 Aligned_cols=46 Identities=9% Similarity=0.074 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCC
Q 009060 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSG 272 (545)
Q Consensus 224 ~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~ 272 (545)
.-.+..+.+-+-+-|.|++-.+.. ..+.+.++|++.++|++.|...
T Consensus 70 ~~~~~~~~~~~~~~P~iIvt~~~~---~p~~l~~~a~~~~ip~l~t~~~ 115 (304)
T TIGR00679 70 EQKQIIHNLLTLNPPAIILSKSFT---DPTVLLQVNETYQVPILKTDLF 115 (304)
T ss_pred HHHHHHHHHhCCCCCEEEEECcCC---CCHHHHHHHHHhCCcEEEeCCc
Confidence 344566667778999999988765 4589999999999999998763
No 457
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=27.51 E-value=2e+02 Score=29.79 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=41.8
Q ss_pred HHHHHHHHHh-cCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh--h
Q 009060 225 VEATADFLNK-AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV--E 301 (545)
Q Consensus 225 i~~~~~~l~~-a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l--~ 301 (545)
++++.+.+.+ .+|++|+.|.... ..+.+.+..+..|+.+..- . +.. +|..--+ ..+.+.+ .
T Consensus 11 ~~~l~~~l~~~~~r~livtd~~~~---~~~~v~~~L~~~g~~~~~~-~----~~~-~p~~~~v-------~~~~~~~~~~ 74 (374)
T cd08183 11 AKELPALAAELGRRVLLVTGASSL---RAAWLIEALRAAGIEVTHV-V----VAG-EPSVELV-------DAAVAEARNA 74 (374)
T ss_pred HHHHHHHHHHcCCcEEEEECCchH---HHHHHHHHHHHcCCeEEEe-c----CCC-CcCHHHH-------HHHHHHHHhc
Confidence 3444455544 5899999997765 5566777777778766432 1 111 3332111 1222222 4
Q ss_pred cCCEEEEeCCC
Q 009060 302 SADAYVFVGPI 312 (545)
Q Consensus 302 ~aD~vl~lG~~ 312 (545)
++|+||.||.-
T Consensus 75 ~~D~IIaiGGG 85 (374)
T cd08183 75 GCDVVIAIGGG 85 (374)
T ss_pred CCCEEEEecCc
Confidence 78999999954
No 458
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=27.45 E-value=1.6e+02 Score=30.02 Aligned_cols=50 Identities=18% Similarity=0.308 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHhcCCCEEEcCccccc---cchH-HHHHHHHHHhCCceEeCC
Q 009060 221 LEAAVEATADFLNKAVKPVLVGGPNIRV---AKAQ-KAFIELADATGYPIAIMP 270 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~rpvi~~G~g~~~---~~a~-~~l~~lae~~~~Pv~tt~ 270 (545)
.++.++++.+++++-+-=++|+|..-.. ..+. .......|+++||++|..
T Consensus 65 ~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 65 KEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 4667899999999998889999975432 2233 344457889999999853
No 459
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=27.07 E-value=7.5e+02 Score=25.96 Aligned_cols=188 Identities=18% Similarity=0.177 Sum_probs=93.9
Q ss_pred CCccHHHHHHHHHHHcCCC-EEEecCCCChHHHHHhhhcCCCCeEE--ecCchhHHHHHHhHHhhhcCceEEEEcCCcch
Q 009060 25 SVGTLGRHLARRLVEIGAK-DVFSVPGDFNLTLLDHLIAEPELNLV--GCCNELNAGYAADGYARSRGVGACVVTFTVGG 101 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~-~vFg~pG~~~~~l~~al~~~~~i~~i--~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~ 101 (545)
......+.+.+.|++.|.+ .||=--|.. -.-++.|.++..+.-| .+.+|-+-=. ..| +...||.
T Consensus 195 vTTp~V~~~~~~Le~~G~Ev~VFHAtG~G-G~aME~Li~~G~~~~VlDlTttEl~d~l-~GG----------v~sagp~- 261 (403)
T PF06792_consen 195 VTTPCVDAIRERLEEEGYEVLVFHATGTG-GRAMERLIREGQFDGVLDLTTTELADEL-FGG----------VLSAGPD- 261 (403)
T ss_pred CcHHHHHHHHHHHHhcCCeEEEEcCCCCc-hHHHHHHHHcCCcEEEEECcHHHHHHHH-hCC----------CCCCCch-
Confidence 3456778899999999987 456555543 2345556555556555 3666643211 111 1134544
Q ss_pred HHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEE----EEeCChhhHHHHHHHHHH
Q 009060 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ----AVVNNLGDAHELIDTAIS 177 (545)
Q Consensus 102 ~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~----~~v~~~~~~~~~l~~A~~ 177 (545)
=+..|-..++|-|+..|.-+--..|... +..+ ++. . |.+-.++ ..-+++++..++=+.--+
T Consensus 262 -----Rl~AA~~~GIP~Vvs~GalDmVnFg~~~----tvPe-~~~-~----R~~~~HNp~vTlmRtt~eE~~~~g~~ia~ 326 (403)
T PF06792_consen 262 -----RLEAAARAGIPQVVSPGALDMVNFGPPD----TVPE-KFK-G----RKLYEHNPQVTLMRTTPEENRQLGEFIAE 326 (403)
T ss_pred -----HHHHHHHcCCCEEEecCccceeccCCcc----cCCH-hhc-C----CcceecCCceeEeeCCHHHHHHHHHHHHH
Confidence 2334555688888887764433222210 1100 000 0 1111111 222356665544322222
Q ss_pred HhhhCCCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccc
Q 009060 178 TALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAK 250 (545)
Q Consensus 178 ~a~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~ 250 (545)
.....+|||.+-||..=... ...+-.++ .++..+...++.+.+.|.....+++-.-......+
T Consensus 327 kLn~~~gpv~v~lP~~G~S~----~d~~G~~f------~Dpead~al~~~l~~~l~~~~i~v~~~~~hIND~~ 389 (403)
T PF06792_consen 327 KLNRAKGPVRVLLPLGGVSA----LDRPGGPF------YDPEADEALFDALRENLDGSGIEVIEVDAHINDPE 389 (403)
T ss_pred HHhcCCCCEEEEECCCCCcc----cCCCCCcC------cChhHHHHHHHHHHHhCCCCCcEEEECCCCCCCHH
Confidence 22234899999999762211 01111111 11233555666666677766778887776665443
No 460
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=27.06 E-value=1.3e+02 Score=34.98 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=26.0
Q ss_pred HhhcCCEEEEeCCCCCCCcccccccC------CCCCcEEEEcCCcce
Q 009060 299 IVESADAYVFVGPIFNDYSSVGYSLL------IKKEKAIIVQPHRVT 339 (545)
Q Consensus 299 ~l~~aD~vl~lG~~~~~~~~~~~~~~------~~~~~~i~id~d~~~ 339 (545)
-+.++|+||++|+...+.....+..+ -++.|+|.||+....
T Consensus 203 Di~~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDPr~t~ 249 (830)
T PRK13532 203 DIEAADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLSTFEHR 249 (830)
T ss_pred HHHhCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECCCCCc
Confidence 35899999999988644322211111 145789999876543
No 461
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=26.64 E-value=1.7e+02 Score=23.21 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcE
Q 009060 251 AQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKA 330 (545)
Q Consensus 251 a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~ 330 (545)
+.+.|++-++++|+.+....+|..-+ .++ ...+-+.++|+||++|....+.. ..+.+.++
T Consensus 16 Aae~L~~aA~~~G~~i~VE~qg~~g~--~~~-------------lt~~~i~~Ad~viia~d~~~~~~-----~rf~gk~v 75 (85)
T TIGR00829 16 AAEALEKAAKKRGWEVKVETQGSVGA--QNA-------------LTAEDIAAADGVILAADREIDLS-----RRFAGKNV 75 (85)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCcCc--cCC-------------CCHHHHHhCCEEEEeccCCCchh-----hhcCCCeE
Confidence 67889999999999998766653211 111 12345689999999997532211 11234467
Q ss_pred EEEcCC
Q 009060 331 IIVQPH 336 (545)
Q Consensus 331 i~id~d 336 (545)
+.++.+
T Consensus 76 ~~~~~~ 81 (85)
T TIGR00829 76 YETSTG 81 (85)
T ss_pred EEecHH
Confidence 666543
No 462
>PRK15138 aldehyde reductase; Provisional
Probab=26.61 E-value=1.3e+02 Score=31.37 Aligned_cols=37 Identities=5% Similarity=0.125 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCCEEEcCccc-cccchHHHHHHHHH
Q 009060 224 AVEATADFLNKAVKPVLVGGPNI-RVAKAQKAFIELAD 260 (545)
Q Consensus 224 ~i~~~~~~l~~a~rpvi~~G~g~-~~~~a~~~l~~lae 260 (545)
.++++.+.++..+|++|+.|... ...+..+.+.+..+
T Consensus 18 ~~~~l~~~l~~~~~~livt~~~~~~~~g~~~~v~~~L~ 55 (387)
T PRK15138 18 AIAGLREQIPADARVLITYGGGSVKKTGVLDQVLDALK 55 (387)
T ss_pred HHHHHHHHHhcCCeEEEECCCchHHhcCcHHHHHHHhc
Confidence 45566666666688889887553 33445555555443
No 463
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=26.39 E-value=7.4 Score=38.15 Aligned_cols=141 Identities=21% Similarity=0.157 Sum_probs=68.8
Q ss_pred HHHHHHHHHHcCCCEEEecCCCChHH--HHHhhhcCCCCeEEecC----------chhHHHHHHhHHhhhcC-ceEEEEc
Q 009060 30 GRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLIAEPELNLVGCC----------NELNAGYAADGYARSRG-VGACVVT 96 (545)
Q Consensus 30 a~~i~~~L~~~GV~~vFg~pG~~~~~--l~~al~~~~~i~~i~~~----------hE~~A~~~A~gyar~tg-~gv~~~t 96 (545)
..+.++.+.+.|.+.|.-.-+...+. +.+.|. +..++|... +|.--+.+=.||--..| +..++.|
T Consensus 39 vnAaiega~~aGa~eVvV~DsHg~~~Nl~~~~L~--~~~~LI~G~~rp~~Mm~Gld~~~Dav~fiGYHa~aGt~~gvL~H 116 (265)
T PF04951_consen 39 VNAAIEGAFEAGATEVVVNDSHGSMRNLLPEELP--PRARLIRGSPRPLSMMEGLDESFDAVFFIGYHARAGTPRGVLAH 116 (265)
T ss_dssp HHHHHHHHHHTT-SEEEEEE-STTS--S-TTTS---TTSEEEEES--TTGGGTT--TT-SEEEEEEE---TTS-SSTT--
T ss_pred HHHHHHHHHhcCCeEEEEEecCCCCCCcChHHCC--cCeEEEeCCCCcchhhhccccCcCEEEEEecCcccCCCCccccc
Confidence 46778999999999999876655433 233332 467777653 12222222235544445 3333333
Q ss_pred CCcchH------------H-HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeC
Q 009060 97 FTVGGL------------S-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN 163 (545)
Q Consensus 97 ~GpG~~------------n-~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~ 163 (545)
+-.|.. . .+++ +-|-.-++|++++|||......-+. .+. + ...+..=+.+..++....
T Consensus 117 T~~~~~i~~v~iNG~~~gE~~lna-~~Ag~~GVPV~lVsGD~~l~~ea~~-----~~P--~-~~tv~vK~~~gr~aA~~~ 187 (265)
T PF04951_consen 117 TYSGSVIHEVRINGREVGEFGLNA-ALAGYYGVPVVLVSGDDALCEEAKE-----LLP--W-IVTVAVKEGIGRYAAISL 187 (265)
T ss_dssp SSSTTE-EEEEETTEEE-HHHHHH-HHHHHTT--EEEEEEEHHHHHHHHT-----TST--T--EEEEEEEEEETTEEEE-
T ss_pred eeccccceeEEECCEEcchhHHHH-HHHhhcCCcEEEEeCcHHHHHHHHH-----hCC--C-ceEEEEecccCCCccccC
Confidence 333322 1 2333 3345679999999998654421111 011 0 000112233344566777
Q ss_pred ChhhHHHHHHHHHHHhhh
Q 009060 164 NLGDAHELIDTAISTALK 181 (545)
Q Consensus 164 ~~~~~~~~l~~A~~~a~~ 181 (545)
+|+.+.+.|+++.+.|..
T Consensus 188 ~p~~a~~~i~~~a~~Al~ 205 (265)
T PF04951_consen 188 HPAEACERIREAAKEALE 205 (265)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 899999999988888876
No 464
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=25.85 E-value=1.1e+02 Score=27.73 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEe
Q 009060 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~t 268 (545)
+.+.+++++++|.+++| +++.|.|.... ....+...-.++|.++..
T Consensus 19 ~~~~l~~~~~~i~~a~~-I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~ 64 (179)
T cd05005 19 DEEELDKLISAILNAKR-IFVYGAGRSGL-VAKAFAMRLMHLGLNVYV 64 (179)
T ss_pred CHHHHHHHHHHHHhCCe-EEEEecChhHH-HHHHHHHHHHhCCCeEEE
Confidence 45678999999999976 77778775432 223333333456888765
No 465
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=25.80 E-value=1.2e+02 Score=30.55 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCC
Q 009060 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSG 272 (545)
Q Consensus 222 ~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~ 272 (545)
++...+..+.+-+-+-|.|++-.+.. ..+++.+.|++.++|++.|...
T Consensus 68 ~~~r~~~~~~l~~~~~P~iIvt~~~~---~p~~l~~~a~~~~ipll~t~~~ 115 (308)
T PRK05428 68 EEERKERLKKLFSLEPPCIIVTRGLE---PPPELLEAAKEAGIPLLRTPLS 115 (308)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECcCC---CCHHHHHHHHHcCCcEEEeCCc
Confidence 33445666777788999999988765 5577999999999999998775
No 466
>PF06711 DUF1198: Protein of unknown function (DUF1198); InterPro: IPR009587 This family consists of several bacterial proteins of around 150 residues in length which are specific to Escherichia coli, Salmonella species and Yersinia pestis. The function of this family is unknown.
Probab=25.78 E-value=52 Score=28.66 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=27.6
Q ss_pred CEEEcCccccccchHHHHHHHHHHhCCceEe
Q 009060 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (545)
Q Consensus 238 pvi~~G~g~~~~~a~~~l~~lae~~~~Pv~t 268 (545)
.|+++|..+-.++...++++|+++++|+.+-
T Consensus 11 VVFivGfRvLtSdtR~A~~~Ls~rL~I~Pv~ 41 (148)
T PF06711_consen 11 VVFIVGFRVLTSDTRRAIRRLSERLNIKPVY 41 (148)
T ss_pred HhheeeEEecccchHHHHHHHHHHhCCCcee
Confidence 4788999999999999999999999997654
No 467
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=25.67 E-value=1.4e+02 Score=31.17 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=35.7
Q ss_pred hcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEE
Q 009060 234 KAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVF 308 (545)
Q Consensus 234 ~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~ 308 (545)
.++|.-||. -...|-+|.++|+.+|+.+|+|+-.....+. -..+-..+.++|+||+
T Consensus 232 ~~~kVaiIT-tDtYRIGA~EQLk~Ya~im~vp~~vv~~~~e------------------l~~ai~~l~~~d~ILV 287 (407)
T COG1419 232 KKKKVAIIT-TDTYRIGAVEQLKTYADIMGVPLEVVYSPKE------------------LAEAIEALRDCDVILV 287 (407)
T ss_pred cCcceEEEE-eccchhhHHHHHHHHHHHhCCceEEecCHHH------------------HHHHHHHhhcCCEEEE
Confidence 344443332 2334557999999999999999976443322 0234456688898876
No 468
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=25.41 E-value=1.2e+02 Score=25.47 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEe
Q 009060 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (545)
Q Consensus 224 ~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~t 268 (545)
.+++++++|.++++ +++.|.|... ....++....+.++.++..
T Consensus 2 ~i~~~~~~i~~~~~-i~i~g~g~s~-~~a~~~~~~l~~~~~~~~~ 44 (139)
T cd05013 2 ALEKAVDLLAKARR-IYIFGVGSSG-LVAEYLAYKLLRLGKPVVL 44 (139)
T ss_pred HHHHHHHHHHhCCE-EEEEEcCchH-HHHHHHHHHHHHcCCceEE
Confidence 47889999999866 7888888643 4556666667777776654
No 469
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=25.35 E-value=1.4e+02 Score=30.65 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHH
Q 009060 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELAD 260 (545)
Q Consensus 225 i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae 260 (545)
++++.+.+. .+|++|+.|.+....+..+.+.+..+
T Consensus 14 ~~~l~~~~~-~~r~lvVtd~~~~~~g~~~~v~~~L~ 48 (355)
T TIGR03405 14 LALAPQLLH-GRRVVVVTFPEARALGLARRLEALLG 48 (355)
T ss_pred HHHHHHHhC-CCeEEEEECcchhhcchHHHHHHHhc
Confidence 445555553 58999999988765555566555443
No 470
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=25.11 E-value=3.3e+02 Score=24.31 Aligned_cols=86 Identities=9% Similarity=0.084 Sum_probs=52.5
Q ss_pred HHHHHHHHhhCCCCCEEEecCCccccc-cccccccCCCeeEeccCccccchhHHHHHHhhhh-cCCCeEEEEEcch----
Q 009060 394 NVLFKHIQDMLSGDTAVIAETGDSWFN-CQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQA-AKDKRVIACIGDG---- 467 (545)
Q Consensus 394 ~~~~~~l~~~l~~~~ivv~d~G~~~~~-~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala-~p~r~vv~i~GDG---- 467 (545)
.++++...+.++++.+|+.|+|+..+. +.++....+...+++ +++.+. .|. .++-.++++=|.-
T Consensus 7 ~~IA~~A~~~I~~~~~Ifld~GtT~~~la~~L~~~~~ltVvTn--------sl~ia~--~l~~~~~~~vi~~GG~~~~~~ 76 (161)
T PF00455_consen 7 RAIARKAASLIEDGDTIFLDSGTTTLELAKYLPDKKNLTVVTN--------SLPIAN--ELSENPNIEVILLGGEVNPKS 76 (161)
T ss_pred HHHHHHHHHhCCCCCEEEEECchHHHHHHHHhhcCCceEEEEC--------CHHHHH--HHHhcCceEEEEeCCEEEcCC
Confidence 456777778889999999999988653 444444445555554 334433 333 3455677766632
Q ss_pred hhcccHHHHHHHHHhCCCeEEE
Q 009060 468 SFQVTAQEISTMIRCGQRSIIF 489 (545)
Q Consensus 468 sf~~~~~eL~ta~~~~lpi~iv 489 (545)
..++....+....+++.++.++
T Consensus 77 ~~~~G~~a~~~l~~~~~d~afi 98 (161)
T PF00455_consen 77 LSFVGPIALEALRQFRFDKAFI 98 (161)
T ss_pred CcEECchHHHHHHhhccceEEe
Confidence 2333455667777888776555
No 471
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=25.07 E-value=84 Score=35.59 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCEEEcCccccccc----hHHHHHHHHHHhC
Q 009060 226 EATADFLNKAVKPVLVGGPNIRVAK----AQKAFIELADATG 263 (545)
Q Consensus 226 ~~~~~~l~~a~rpvi~~G~g~~~~~----a~~~l~~lae~~~ 263 (545)
.+++++|+++|+|+|++|.|+.... ....+..|+..+|
T Consensus 428 ~~~a~~l~~Ak~~~Ii~G~g~~~~~~g~~~~~ai~~La~~~G 469 (687)
T PRK09130 428 HEFADVLKAAKRPMIIVGQGALARADGAAVLALAAKLAEKVG 469 (687)
T ss_pred HHHHHHHhcCCCcEEEECCcccccccHHHHHHHHHHHHHHhC
Confidence 4678899999999999999986532 2355666777776
No 472
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=24.93 E-value=2.9e+02 Score=28.90 Aligned_cols=98 Identities=13% Similarity=0.149 Sum_probs=55.4
Q ss_pred CcCHHHHHHHHHhhCC------CCCEEEecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEE
Q 009060 390 PLRVNVLFKHIQDMLS------GDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIAC 463 (545)
Q Consensus 390 ~~~~~~~~~~l~~~l~------~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i 463 (545)
..++..++..+.+.+. ...++++..++ .-.. .+.+|+++.+.|.||++++-++- ..+-.|+.+
T Consensus 163 ~~~~~~i~~~v~~~~~~~~~~~~~~vlit~g~t-~E~i------D~VR~itN~SSG~~g~~~a~~~~----~~Ga~V~~~ 231 (390)
T TIGR00521 163 LAEPETIVKAAEREFSPKEDLEGKRVLITAGPT-REPI------DPVRFISNLSSGKMGLALAEAAY----KRGADVTLI 231 (390)
T ss_pred CCCHHHHHHHHHHHHhhccccCCceEEEecCCc-cCCC------CceeeecCCCcchHHHHHHHHHH----HCCCEEEEe
Confidence 3456666666665543 34555554332 2111 25569999999999888776654 345678888
Q ss_pred Ecchhhcc----------cHHHH-HHHHHhCCCeEEEEEeCCchhh
Q 009060 464 IGDGSFQV----------TAQEI-STMIRCGQRSIIFLINNGGYTI 498 (545)
Q Consensus 464 ~GDGsf~~----------~~~eL-~ta~~~~lpi~ivV~NN~~~g~ 498 (545)
.|.++... +..|+ ..+.+.-.+-.=+++||.+-.-
T Consensus 232 ~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd 277 (390)
T TIGR00521 232 TGPVSLLTPPGVKSIKVSTAEEMLEAALNELAKDFDIFISAAAVAD 277 (390)
T ss_pred CCCCccCCCCCcEEEEeccHHHHHHHHHHhhcccCCEEEEcccccc
Confidence 88766431 35666 3333222332335666666543
No 473
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=24.93 E-value=1.9e+02 Score=25.16 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHhcCCCEEEcCccccc---cchHHHHHHHHHHhCCce
Q 009060 221 LEAAVEATADFLNKAVKPVLVGGPNIRV---AKAQKAFIELADATGYPI 266 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~rpvi~~G~g~~~---~~a~~~l~~lae~~~~Pv 266 (545)
....++.++++.++...+.|++.+|... ....+..++.+.+.|+|-
T Consensus 19 ~~~R~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~ 67 (150)
T cd06259 19 LAERLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPA 67 (150)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCH
Confidence 4567899999999997776666655532 235677888889888753
No 474
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=24.76 E-value=94 Score=34.28 Aligned_cols=51 Identities=14% Similarity=0.255 Sum_probs=38.7
Q ss_pred hHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCch
Q 009060 444 SVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGY 496 (545)
Q Consensus 444 ~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~~ 496 (545)
++.+++||+++ +.+++..+-=.||.+-.--|..+.-..+|+++++.+..+-
T Consensus 249 A~~~a~GAs~a--G~Ra~taTSg~Gl~lm~E~l~~a~~~~~P~Vi~~~~R~gp 299 (562)
T TIGR03710 249 AINMAIGASYA--GARAMTATSGPGFALMTEALGLAGMTETPLVIVDVQRGGP 299 (562)
T ss_pred HHHHHHhHHhc--CCceeecCCCCChhHhHHHHhHHHhccCCEEEEEcccCCC
Confidence 77899999887 5566666666666655566788888899999999988754
No 475
>COG1915 Uncharacterized conserved protein [Function unknown]
Probab=24.47 E-value=26 Score=34.58 Aligned_cols=99 Identities=17% Similarity=0.200 Sum_probs=61.2
Q ss_pred HHHhCCceEeCCCCccCCCCCCCCccceecCCC-CCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCc
Q 009060 259 ADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAV-SSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHR 337 (545)
Q Consensus 259 ae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~-~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~ 337 (545)
|-+.++|++-. |.+-++-||-=-.. -.+ ......+.++.+|.||.+-+.+.+..+++.. +...|.|.||++|
T Consensus 299 CvkNniPfvLA----GSIRDDGPlPdvit-dvm~Aq~~m~~~l~g~dmvlMlstMLHSIa~GNll--Ps~VKtiCVDiNP 371 (415)
T COG1915 299 CVKNNIPFVLA----GSIRDDGPLPDVIT-DVMEAQEEMREHLQGADMVLMLSTMLHSIAVGNLL--PSGVKTICVDINP 371 (415)
T ss_pred hhhcCCCeEEe----cccccCCCCchHHH-HHHHHHHHHHHHhccCccHHHHHHHHHHHhhcCcc--hhhceEEEEecCh
Confidence 45677887753 33444555431110 001 1123467789999999998888777666543 3467999999999
Q ss_pred ceecC---C-Cc--ccc-ccHHHHHHHHHHHhcc
Q 009060 338 VTVGN---G-PS--LGW-VFMADFLSALAKKLRK 364 (545)
Q Consensus 338 ~~~~~---~-~~--~~~-~d~~~~l~~L~~~l~~ 364 (545)
....+ + .. ..- -|+..||..|...++.
T Consensus 372 avVTKL~DRGs~qavgvVTDVGlFlplL~~elkk 405 (415)
T COG1915 372 AVVTKLSDRGSSQAVGVVTDVGLFLPLLVRELKK 405 (415)
T ss_pred HHheecccCCccceeEEEeehhHhHHHHHHHHHH
Confidence 76531 1 11 111 2789999999887754
No 476
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=24.26 E-value=3e+02 Score=27.13 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=40.7
Q ss_pred cCccccchhHHHHHHhhhhc-------CCCeEEEEEcchhhccc--HHHHH----------HHHHhCCCeEEEEEeCCch
Q 009060 436 MQYGSIGWSVGATLGYAQAA-------KDKRVIACIGDGSFQVT--AQEIS----------TMIRCGQRSIIFLINNGGY 496 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~-------p~r~vv~i~GDGsf~~~--~~eL~----------ta~~~~lpi~ivV~NN~~~ 496 (545)
.-+..||.+++..+|.++.+ ...|+|++.--|+.-|. +..|. -..+.++|.+.|+-|=-..
T Consensus 129 ~df~FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtG 208 (294)
T COG0777 129 MDFAFMGGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTG 208 (294)
T ss_pred EeccccccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCcc
Confidence 34556677777777766542 35789999999988663 22222 2224589988877776666
Q ss_pred hh
Q 009060 497 TI 498 (545)
Q Consensus 497 g~ 498 (545)
|+
T Consensus 209 GV 210 (294)
T COG0777 209 GV 210 (294)
T ss_pred ch
Confidence 65
No 477
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=24.12 E-value=3e+02 Score=30.18 Aligned_cols=85 Identities=14% Similarity=0.194 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh
Q 009060 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l 300 (545)
....++++.+.+.+.++.+|+.-..+..-.+...+.++.+++|..|.. .+|...|-..|.. .....+..
T Consensus 40 ~~~a~~~i~~~i~~~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~~v~~------~ip~r~~~~yg~~-----~~~i~~~~ 108 (539)
T TIGR00644 40 MEKAVERIIEAIENNEKILIFGDYDVDGITSTAILVEFLKDLGVNVDY------YIPNRITEGYGLS-----PEALREAI 108 (539)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEccCCCcHHHHHHHHHHHHHCCCceEE------EeCCCCcccCCCC-----HHHHHHHH
Confidence 455677777888877766665544444445778888899999988743 2344433333321 11222222
Q ss_pred -hcCCEEEEeCCCCCCC
Q 009060 301 -ESADAYVFVGPIFNDY 316 (545)
Q Consensus 301 -~~aD~vl~lG~~~~~~ 316 (545)
...|++|++.+...+.
T Consensus 109 ~~~~~LiI~vD~G~~~~ 125 (539)
T TIGR00644 109 ENGVSLIITVDNGISAH 125 (539)
T ss_pred hcCCCEEEEeCCCcccH
Confidence 3579999999876544
No 478
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=23.88 E-value=1.3e+02 Score=31.36 Aligned_cols=47 Identities=11% Similarity=0.161 Sum_probs=33.7
Q ss_pred hHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEe
Q 009060 444 SVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLIN 492 (545)
Q Consensus 444 ~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~N 492 (545)
++.+++||+++ +.+++..+-=+||.+-.--|..++-..+|+++++.+
T Consensus 59 A~~~a~GAs~a--G~Ra~taTSg~G~~lm~E~~~~a~~~e~P~V~~~~~ 105 (375)
T PRK09627 59 GISVALGASMS--GVKSMTASSGPGISLKAEQIGLGFIAEIPLVIVNVM 105 (375)
T ss_pred HHHHHHHHHhh--CCCEEeecCCchHHHHhhHHHHHHhccCCEEEEEec
Confidence 67888998887 456666665555555445577778888998888777
No 479
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=23.77 E-value=4.4e+02 Score=23.68 Aligned_cols=89 Identities=13% Similarity=0.026 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCCEEEecCCCChHHHHHhhhc---CCCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcch-HHHH
Q 009060 30 GRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA---EPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG-LSVL 105 (545)
Q Consensus 30 a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~---~~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~-~n~~ 105 (545)
-+.+++.|.+.+-=++||+-++. .+...+.. .-++..+... |.. ...++.--++++-+.+|- ...+
T Consensus 20 ~~~~~~~l~~a~~I~i~G~G~S~--~~A~~~~~~l~~~g~~~~~~~-~~~-------~~~~~~~Dv~I~iS~sG~t~~~i 89 (179)
T TIGR03127 20 LDKLADKIIKAKRIFVAGAGRSG--LVGKAFAMRLMHLGFNVYVVG-ETT-------TPSIKKGDLLIAISGSGETESLV 89 (179)
T ss_pred HHHHHHHHHhCCEEEEEecCHHH--HHHHHHHHHHHhCCCeEEEeC-Ccc-------cCCCCCCCEEEEEeCCCCcHHHH
Confidence 46678888887766666665443 33332221 1245444332 211 122222234444445554 4567
Q ss_pred HHHHHhHhcCCcEEEEeCCCCCc
Q 009060 106 NAIAGAYSENLPVICIVGGPNSN 128 (545)
Q Consensus 106 ~~l~~A~~~~~Pllvi~g~~~~~ 128 (545)
..+..|...+.|+|.||+.....
T Consensus 90 ~~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 90 TVAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred HHHHHHHHCCCeEEEEECCCCCc
Confidence 88888999999999999976554
No 480
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=23.74 E-value=1.5e+02 Score=34.49 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=26.0
Q ss_pred HhhcCCEEEEeCCCCCCCcccccccC------CCCCcEEEEcCCcce
Q 009060 299 IVESADAYVFVGPIFNDYSSVGYSLL------IKKEKAIIVQPHRVT 339 (545)
Q Consensus 299 ~l~~aD~vl~lG~~~~~~~~~~~~~~------~~~~~~i~id~d~~~ 339 (545)
-+.++|+||++|+...+.....+..+ -++.|+|.||+....
T Consensus 203 Di~~ad~il~~G~Np~~~~p~~~~~i~~a~~~~~GakliviDPr~t~ 249 (830)
T TIGR01706 203 DFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKVKVVVLSTFTHR 249 (830)
T ss_pred HHhhCCEEEEEcCCcchhCCHHHHHHHHHHhccCCCEEEEECCCCCc
Confidence 35899999999988644322111111 136799999876543
No 481
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=23.58 E-value=5.1e+02 Score=23.32 Aligned_cols=88 Identities=16% Similarity=0.043 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCCCEEEecCCCChHHHHHh----hhcCCCCeEEecCchhHHHHHHhHHhhhcCc-eEEEEcCCcchHHH
Q 009060 30 GRHLARRLVEIGAKDVFSVPGDFNLTLLDH----LIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (545)
Q Consensus 30 a~~i~~~L~~~GV~~vFg~pG~~~~~l~~a----l~~~~~i~~i~~~hE~~A~~~A~gyar~tg~-gv~~~t~GpG~~n~ 104 (545)
-+.+++.|.+.+-=++||+-++ ..+... +.. -++.++...+ .. ....+.- .+++.+...-..+.
T Consensus 23 l~~~~~~i~~a~~I~i~G~G~S--~~~A~~~~~~l~~-~g~~~~~~~~-~~-------~~~~~~~D~vI~iS~sG~t~~~ 91 (179)
T cd05005 23 LDKLISAILNAKRIFVYGAGRS--GLVAKAFAMRLMH-LGLNVYVVGE-TT-------TPAIGPGDLLIAISGSGETSSV 91 (179)
T ss_pred HHHHHHHHHhCCeEEEEecChh--HHHHHHHHHHHHh-CCCeEEEeCC-CC-------CCCCCCCCEEEEEcCCCCcHHH
Confidence 3567888888866677776443 333332 322 2555554432 11 1122222 33333333345677
Q ss_pred HHHHHHhHhcCCcEEEEeCCCCCc
Q 009060 105 LNAIAGAYSENLPVICIVGGPNSN 128 (545)
Q Consensus 105 ~~~l~~A~~~~~Pllvi~g~~~~~ 128 (545)
+..+-.|...+.|+|.||+.....
T Consensus 92 i~~~~~ak~~g~~iI~IT~~~~s~ 115 (179)
T cd05005 92 VNAAEKAKKAGAKVVLITSNPDSP 115 (179)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCc
Confidence 888888999999999999976554
No 482
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=23.42 E-value=4e+02 Score=25.68 Aligned_cols=84 Identities=12% Similarity=0.054 Sum_probs=45.2
Q ss_pred HHHHHHHhhCCCCCEEEecCCccccc-cccccccCCCeeEeccCccccchhHHHHHHhhhh-cCCCeEEEEEcc----hh
Q 009060 395 VLFKHIQDMLSGDTAVIAETGDSWFN-CQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQA-AKDKRVIACIGD----GS 468 (545)
Q Consensus 395 ~~~~~l~~~l~~~~ivv~d~G~~~~~-~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala-~p~r~vv~i~GD----Gs 468 (545)
.+.+...+.++++..|+.|+|+.... +.++.. .+...+++ +++.|. .+. .|+-.++++-|. ..
T Consensus 82 ~IA~~Aa~lI~~gd~Ifld~GtT~~~l~~~L~~-~~ltVvTN--------s~~ia~--~l~~~~~~~vil~GG~~~~~~~ 150 (240)
T PRK10411 82 DIAREALAWIEEGMVIALDASSTCWYLARQLPD-INIQVFTN--------SHPICQ--ELGKRERIQLISSGGTLERKYG 150 (240)
T ss_pred HHHHHHHHhCCCCCEEEEcCcHHHHHHHHhhCC-CCeEEEeC--------CHHHHH--HHhcCCCCEEEEECCEEeCCCC
Confidence 45666667788888888888877643 333432 23334443 233332 232 355566655552 12
Q ss_pred hcccHHHHHHHHHhCCCeEEE
Q 009060 469 FQVTAQEISTMIRCGQRSIIF 489 (545)
Q Consensus 469 f~~~~~eL~ta~~~~lpi~iv 489 (545)
.++....+..+.+++.+..++
T Consensus 151 ~~~G~~a~~~l~~~~~d~afi 171 (240)
T PRK10411 151 CYVNPSLISQLKSLEIDLFIF 171 (240)
T ss_pred ceECHHHHHHHHhcCCCEEEE
Confidence 233444566666777775544
No 483
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=23.24 E-value=1.9e+02 Score=24.76 Aligned_cols=44 Identities=9% Similarity=0.181 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeC
Q 009060 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (545)
Q Consensus 226 ~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (545)
++..+.|++.+-.++++...+....-.+.+..+|+..++|++..
T Consensus 36 ~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~ 79 (122)
T PRK04175 36 NETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYV 79 (122)
T ss_pred HHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEE
Confidence 34455666666777777766643233578999999999998654
No 484
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=22.94 E-value=50 Score=35.26 Aligned_cols=107 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCC------CEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHH
Q 009060 222 EAAVEATADFLNKAVK------PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSF 295 (545)
Q Consensus 222 ~~~i~~~~~~l~~a~r------pvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~ 295 (545)
+++++.+++.|++.+. .++..|.+. ....+.+|+..+|.+-+.+...-..-+...-+.... |..+. .
T Consensus 77 deAl~~ia~~l~~~~~~~G~~~i~~~~~~~~----~~~~~~~~~~~lGt~n~~~~~~~c~~~~~~~~~~~~--g~~~~-~ 149 (454)
T cd02755 77 DEALQYIASKLKEIKEQHGPESVLFGGHGGC----YSPFFKHFAAAFGSPNIFSHESTCLASKNLAWKLVI--DSFGG-E 149 (454)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEecCCc----ccHHHHHHHHHhCCCCCCCccccchhHHHHHHHHHh--hccCC-C
Q ss_pred HHHHhhcCCEEEEeCCCCCCCcccccccCC-----CCCcEEEEcC
Q 009060 296 CGEIVESADAYVFVGPIFNDYSSVGYSLLI-----KKEKAIIVQP 335 (545)
Q Consensus 296 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~-----~~~~~i~id~ 335 (545)
...-+.++|+||++|+...+.....+.... ++.|+|.||+
T Consensus 150 ~~~d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdP 194 (454)
T cd02755 150 VNPDFENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDP 194 (454)
T ss_pred CCcchhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECC
No 485
>PRK13018 cell division protein FtsZ; Provisional
Probab=22.68 E-value=1.4e+02 Score=31.07 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCcc-ccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCc-cceecCCCCCHHHHHH
Q 009060 222 EAAVEATADFLNKAVKPVLVGGPN-IRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHF-IGTYWGAVSSSFCGEI 299 (545)
Q Consensus 222 ~~~i~~~~~~l~~a~rpvi~~G~g-~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~-~G~~~G~~~~~~~~~~ 299 (545)
.+..+++.+.|..+..-+|++|-| ...+++...+.+.++..+++++.. .. -|+. -|...-.......+++
T Consensus 100 ee~~d~I~~~le~~D~vfI~aGLGGGTGSGaapvIa~iake~g~ltv~v----Vt----~Pf~~EG~~r~~nA~~gL~~L 171 (378)
T PRK13018 100 EESRDEIKEVLKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGALVVGV----VT----KPFKFEGRARMQKAEEGIERL 171 (378)
T ss_pred HHHHHHHHHHhcCCCEEEEEeeccCcchhhHHHHHHHHHHHcCCCeEEE----EE----cCcccccHhHHHHHHHHHHHH
Confidence 445677778888888878888754 345688899999999998876532 11 1221 1100000000133556
Q ss_pred hhcCCEEEEeC
Q 009060 300 VESADAYVFVG 310 (545)
Q Consensus 300 l~~aD~vl~lG 310 (545)
.+.+|.+|++-
T Consensus 172 ~e~~D~vivid 182 (378)
T PRK13018 172 REAADTVIVID 182 (378)
T ss_pred HHhCCEEEEEe
Confidence 67899999884
No 486
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=22.65 E-value=94 Score=35.87 Aligned_cols=107 Identities=14% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhh
Q 009060 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVE 301 (545)
Q Consensus 222 ~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~ 301 (545)
+..++++++.|++++ -|..++.... +..-.+.+|++.+|.+.+... ++- +...-.-+.-.+ |.. .....+-+.
T Consensus 297 e~A~deA~e~lk~~~--aI~~S~~~TN-EE~YllqKLar~lgtnnvD~~-aR~-~~~~~~~l~~~~-G~~-~t~sl~DI~ 369 (819)
T PRK08493 297 EKAFKEAVEAFKEAK--AIKFNSFITN-EEALILQRLKKKFGLKLINEE-ALK-FQQFLKVFSEVS-GKS-YSANLEDIK 369 (819)
T ss_pred HHHHHHHHHHHhhCC--EEEecCCCCH-HHHHHHHHHHHHhCCCCccch-hhh-hhHHHHHHHHhc-CCC-CCCCHHHHh
Q ss_pred cCCEEEEeCCCCCCCcccccccCC-----CCCcEEEEcC
Q 009060 302 SADAYVFVGPIFNDYSSVGYSLLI-----KKEKAIIVQP 335 (545)
Q Consensus 302 ~aD~vl~lG~~~~~~~~~~~~~~~-----~~~~~i~id~ 335 (545)
++|+||++|+.+.+....-+..+. .+.++|.||+
T Consensus 370 ~AD~IlviGsN~~e~hPvl~~~I~~A~k~~gaklIvidP 408 (819)
T PRK08493 370 TSDFVVVAGSALKTDNPLLRYAINNALKMNKASGLYFHP 408 (819)
T ss_pred hCCEEEEECCChhhhCHHHHHHHHHHHHhCCCeEEEEec
No 487
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=22.65 E-value=2.7e+02 Score=27.94 Aligned_cols=81 Identities=10% Similarity=-0.063 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCcc-ccccchHHHHHHHHHHhCCceEeCCCCccCCCC-CCCCccceecCCCCCHHHHHH
Q 009060 222 EAAVEATADFLNKAVKPVLVGGPN-IRVAKAQKAFIELADATGYPIAIMPSGKGLVPE-HHPHFIGTYWGAVSSSFCGEI 299 (545)
Q Consensus 222 ~~~i~~~~~~l~~a~rpvi~~G~g-~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~-~hpl~~G~~~G~~~~~~~~~~ 299 (545)
.+..+++.+.+..+.--+|++|-| ...+++...+.+.+...+++++.-..-.-.+.. ..+... ....+++
T Consensus 72 ~e~~~~I~~~le~~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~~~~~vvt~Pf~~Eg~~~~~NA--------~~~l~~L 143 (303)
T cd02191 72 EEVQEAIDNIPVHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVTLPFSDEGGIRMLNA--------AEGFQTL 143 (303)
T ss_pred HHHHHHHHHHHcCCCEEEEEeccCCccchhHHHHHHHHHHHhCCCEEEEEeCCcccCCccchhhH--------HHHHHHH
Confidence 334566667777788777776643 344678888989888888766552211100100 111111 1134566
Q ss_pred hhcCCEEEEeC
Q 009060 300 VESADAYVFVG 310 (545)
Q Consensus 300 l~~aD~vl~lG 310 (545)
.+.+|.++++-
T Consensus 144 ~~~~D~~iv~d 154 (303)
T cd02191 144 VREVDNLMVIP 154 (303)
T ss_pred HHhCCEEEEEe
Confidence 67899998884
No 488
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=22.61 E-value=2.3e+02 Score=31.22 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=26.9
Q ss_pred hhcCCEEEEeCCCCCCCccccccc----CCCCCcEEEEcCCccee
Q 009060 300 VESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVTV 340 (545)
Q Consensus 300 l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~~~~ 340 (545)
+.++|+||++|+...+.....+.. .-++.|+|.||+.....
T Consensus 157 ~~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr~s~t 201 (567)
T cd02765 157 WVNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPVYSTT 201 (567)
T ss_pred HhcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCCCCcc
Confidence 579999999998863332212211 12467999999877654
No 489
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=22.54 E-value=3.4e+02 Score=27.62 Aligned_cols=94 Identities=10% Similarity=0.030 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHh----hhcCCCCeEEecCchhHHHHHHhHHhhhcC--ceEEEEcCCcchHHH
Q 009060 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDH----LIAEPELNLVGCCNELNAGYAADGYARSRG--VGACVVTFTVGGLSV 104 (545)
Q Consensus 31 ~~i~~~L~~~GV~~vFg~pG~~~~~l~~a----l~~~~~i~~i~~~hE~~A~~~A~gyar~tg--~gv~~~t~GpG~~n~ 104 (545)
+.+++.|.+.++++||-+--+.+...... +.+..++.+.. ....-|.-......+. ..+++..|| -..+.
T Consensus 33 ~~~~~~l~~~~~~~I~~~g~GsS~~aa~~~~~~~~k~~~i~v~~---~~~~~~~~~~~~~~~~~~lvI~iS~SG-eT~e~ 108 (340)
T PRK11382 33 HAIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSDLQVYA---ISGWEFCDNTPYRLDDRCAVIGVSDYG-KTEEV 108 (340)
T ss_pred HHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHHcCCCeEE---eccHHHHhcCCcCCCCCCEEEEEcCCC-CCHHH
Confidence 55788888888887655443333322211 23322443322 2222233222222332 344444444 34578
Q ss_pred HHHHHHhHhcCCcEEEEeCCCCCc
Q 009060 105 LNAIAGAYSENLPVICIVGGPNSN 128 (545)
Q Consensus 105 ~~~l~~A~~~~~Pllvi~g~~~~~ 128 (545)
+.++..|...+.|+|.||+...+.
T Consensus 109 i~al~~ak~~Ga~~I~IT~~~~S~ 132 (340)
T PRK11382 109 IKALELGRACGALTAAFTKRADSP 132 (340)
T ss_pred HHHHHHHHHcCCeEEEEECCCCCh
Confidence 899999999999999999986655
No 490
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=22.54 E-value=1.8e+02 Score=26.05 Aligned_cols=49 Identities=10% Similarity=-0.132 Sum_probs=36.6
Q ss_pred hHHHHHHhhhhcCCCeEEEE-EcchhhcccHHHHHHHHHhCCCeEEEEEeCC
Q 009060 444 SVGATLGYAQAAKDKRVIAC-IGDGSFQVTAQEISTMIRCGQRSIIFLINNG 494 (545)
Q Consensus 444 ~l~aAiGaala~p~r~vv~i-~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~ 494 (545)
+.-+|-|.+.+. ++.+++ +...++.-.+..|.+|...+.|+++|.-+..
T Consensus 47 A~~mA~gyar~t--~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~ 96 (162)
T cd07038 47 AGYAADGYARVK--GLGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGAPS 96 (162)
T ss_pred HHHHHHHHHHhh--CCEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 445677777765 355554 4667777789999999999999999887654
No 491
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=22.41 E-value=5.5e+02 Score=25.23 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHH--HHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcch-HHHHHH
Q 009060 31 RHLARRLVEIGAKDVFSVPGDFNLT--LLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG-LSVLNA 107 (545)
Q Consensus 31 ~~i~~~L~~~GV~~vFg~pG~~~~~--l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~-~n~~~~ 107 (545)
+.+++.|.+..--++||+-++.... +...+.+ -++..+.. ++........ ..++---++++-+..|- -+.+..
T Consensus 131 ~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~-~g~~~~~~-~d~~~~~~~~--~~~~~~Dl~I~iS~sG~t~~~~~~ 206 (292)
T PRK11337 131 HRAARFFYQARQRDLYGAGGSAAIARDVQHKFLR-IGVRCQAY-DDAHIMLMSA--ALLQEGDVVLVVSHSGRTSDVIEA 206 (292)
T ss_pred HHHHHHHHcCCeEEEEEecHHHHHHHHHHHHHhh-CCCeEEEc-CCHHHHHHHH--hcCCCCCEEEEEeCCCCCHHHHHH
Confidence 5567777777777888886554322 2223333 35555443 3333222222 22322233333444443 467778
Q ss_pred HHHhHhcCCcEEEEeCCCCCc
Q 009060 108 IAGAYSENLPVICIVGGPNSN 128 (545)
Q Consensus 108 l~~A~~~~~Pllvi~g~~~~~ 128 (545)
+..|...+.|+|.||+.....
T Consensus 207 ~~~ak~~g~~ii~IT~~~~s~ 227 (292)
T PRK11337 207 VELAKKNGAKIICITNSYHSP 227 (292)
T ss_pred HHHHHHCCCeEEEEeCCCCCh
Confidence 888999999999999986654
No 492
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=22.39 E-value=2.7e+02 Score=24.62 Aligned_cols=49 Identities=20% Similarity=0.260 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCcccc-------ccchHHHHHHHHHHhCCceEeCC
Q 009060 222 EAAVEATADFLNKAVKPVLVGGPNIR-------VAKAQKAFIELADATGYPIAIMP 270 (545)
Q Consensus 222 ~~~i~~~~~~l~~a~rpvi~~G~g~~-------~~~a~~~l~~lae~~~~Pv~tt~ 270 (545)
...++++++.+++...++|+++.-.. .....+.++++|++.+++++..+
T Consensus 87 ~~~l~~li~~~~~~~~~vil~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~d~~ 142 (177)
T cd01822 87 RANLRQMIETAQARGAPVLLVGMQAPPNYGPRYTRRFAAIYPELAEEYGVPLVPFF 142 (177)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCccchHHHHHHHHHHHHHHHHcCCcEechH
Confidence 45577777777776777888764211 12345778899999999998753
No 493
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=22.27 E-value=24 Score=37.15 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh-----cCCCEEEcCccccc-cchHHHHHHHHHHhCCceEeCCCCccCCCCCCC--CccceecCCCCC
Q 009060 222 EAAVEATADFLNK-----AVKPVLVGGPNIRV-AKAQKAFIELADATGYPIAIMPSGKGLVPEHHP--HFIGTYWGAVSS 293 (545)
Q Consensus 222 ~~~i~~~~~~l~~-----a~rpvi~~G~g~~~-~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hp--l~~G~~~G~~~~ 293 (545)
+++++.+++.|++ ...-+++.+.+-.. .+..-.+.+|++.+|-|-+......+..+..+. .+-+...+....
T Consensus 23 deAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 102 (432)
T PF00384_consen 23 DEALDEIAEKLKEIIDKYGPDSIAFFGSGGGTSNEEWYLLQRFARALGSPNTNNHGSQCDTCMASAAEAFGGDFVGGPAF 102 (432)
T ss_dssp HHHHHHHHHHHHHHHHHCTGGGEEEEEETTTSSHHHHHHHHHHHHHTTHHEEEEEEEGGGCTTHHHHHHHSSHSHTSSSC
T ss_pred HHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhheecccccCccc
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCCcccccccCCC-----CCcEEEEcCC
Q 009060 294 SFCGEIVESADAYVFVGPIFNDYSSVGYSLLIK-----KEKAIIVQPH 336 (545)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~-----~~~~i~id~d 336 (545)
.....-+.++|+||++|+...+........+.. +.|+|.||+.
T Consensus 103 ~~~~~D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~ 150 (432)
T PF00384_consen 103 GNPLEDIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPR 150 (432)
T ss_dssp CSHHHGGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESS
T ss_pred ccccceeeccceEEEcccCccccccccccccccccccCCcceEEEEec
No 494
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=22.24 E-value=3.1e+02 Score=20.93 Aligned_cols=47 Identities=13% Similarity=0.064 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEe
Q 009060 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~t 268 (545)
+...+..+++.+.+....++|+-+|+. .++.....+.|+..++|++.
T Consensus 16 D~~~i~~~Ld~~~~~~~~~~lvhGga~-~GaD~iA~~wA~~~gv~~~~ 62 (71)
T PF10686_consen 16 DHELIWAALDKVHARHPDMVLVHGGAP-KGADRIAARWARERGVPVIR 62 (71)
T ss_pred cHHHHHHHHHHHHHhCCCEEEEECCCC-CCHHHHHHHHHHHCCCeeEE
Confidence 344566666655544444445544542 35778888999999999975
No 495
>PRK14974 cell division protein FtsY; Provisional
Probab=22.11 E-value=1.8e+02 Score=29.70 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEe
Q 009060 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~t 268 (545)
-...+.+++..+....+.++++.....+.++.+++..+++++|+|++.
T Consensus 153 KTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~ 200 (336)
T PRK14974 153 KTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK 200 (336)
T ss_pred HHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec
Confidence 345677777777766556666666666677889999999999999975
No 496
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=22.10 E-value=1.1e+02 Score=30.05 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=31.5
Q ss_pred HHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCC
Q 009060 229 ADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (545)
Q Consensus 229 ~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (545)
++.+.+.+.=+|+.|..........-=..+||.||+|.+|..
T Consensus 104 aa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v 145 (260)
T COG2086 104 AAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYV 145 (260)
T ss_pred HHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeE
Confidence 344445555599999988866666666789999999999854
No 497
>PRK05954 precorrin-8X methylmutase; Provisional
Probab=22.03 E-value=1.8e+02 Score=27.29 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHhc-CCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCcc
Q 009060 221 LEAAVEATADFLNKA-VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKG 274 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a-~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg 274 (545)
.+..+-++.+++.+. -+|-+++|-=+---++. +-++...+.++|.++....||
T Consensus 130 APTAL~~l~eli~~g~~~PalVIg~PVGFV~A~-ESKe~L~~~~iP~It~~GrkG 183 (203)
T PRK05954 130 APTALLALCQQIRAGRVKPSLVIGVPVGFVSVV-EAKQALAQLDVPQIRVEGRKG 183 (203)
T ss_pred CHHHHHHHHHHHHcCCCCCCEEEEECCcccCHH-HHHHHHHhCCCCEEEEecCCC
Confidence 355677888888875 58988988644332333 233333568999999887776
No 498
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=21.89 E-value=94 Score=26.74 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=22.3
Q ss_pred CEEEcCccccccchHHHHHHHHHHhC
Q 009060 238 PVLVGGPNIRVAKAQKAFIELADATG 263 (545)
Q Consensus 238 pvi~~G~g~~~~~a~~~l~~lae~~~ 263 (545)
.+|++|.|.+..++.+.+.+|++++.
T Consensus 2 ~lllvgHGSR~~~~~~~~~~la~~l~ 27 (125)
T cd03415 2 AIIIITHGSRRNTFNEDMEEWAAYLE 27 (125)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHH
Confidence 47899999999888888888888774
No 499
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=21.86 E-value=1.2e+02 Score=34.43 Aligned_cols=112 Identities=21% Similarity=0.149 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHh-----cCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCC--CCccceecCCCCC
Q 009060 221 LEAAVEATADFLNK-----AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHH--PHFIGTYWGAVSS 293 (545)
Q Consensus 221 ~~~~i~~~~~~l~~-----a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~h--pl~~G~~~G~~~~ 293 (545)
-+++++.+++.|++ .++-.++.|.+. .......|+..+|.|-+....+-...+... ...+|. ....
T Consensus 75 WDEAld~IA~kL~~i~~~gp~~ia~~~g~~~----~~~l~~~f~~~lGt~n~~~~~~~C~~~~~~a~~~~~G~---~~~~ 147 (679)
T cd02763 75 WEEAFSIATKRLKAARATDPKKFAFFTGRDQ----MQALTGWFAGQFGTPNYAAHGGFCSVNMAAGGLYSIGG---SFWE 147 (679)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeCCcc----HHHHHHHHHHhcCCCCcCCCCCcchHHHHHHHHHhhCC---CCCC
Confidence 46677777777764 223345555432 233456678888877543321110000000 011111 0000
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCCc-cc--cccc-CCCCCcEEEEcCCccee
Q 009060 294 SFCGEIVESADAYVFVGPIFNDYS-SV--GYSL-LIKKEKAIIVQPHRVTV 340 (545)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~-~~--~~~~-~~~~~~~i~id~d~~~~ 340 (545)
....-+.+||+||++|+...... .. .+.. .-++.|+|.||+.....
T Consensus 148 -~~~~D~~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvIDPr~t~t 197 (679)
T cd02763 148 -FGGPDLEHTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNPVRTGY 197 (679)
T ss_pred -CChhHHHhCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEcCcCCcc
Confidence 11234679999999997542211 11 1111 11356899998866543
No 500
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=21.78 E-value=1.2e+02 Score=29.79 Aligned_cols=46 Identities=22% Similarity=0.212 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEe
Q 009060 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~t 268 (545)
+.+.+++++++|.++++ ++++|.|....-+...-..|.. +|+|+..
T Consensus 114 d~~~i~~~~~~i~~a~~-I~i~G~G~S~~~a~~~~~~l~~-~g~~~~~ 159 (284)
T PRK11302 114 DPSAINRAVDLLTQAKK-ISFFGLGASAAVAHDAQNKFFR-FNVPVVY 159 (284)
T ss_pred CHHHHHHHHHHHHcCCe-EEEEEcchHHHHHHHHHHHHHh-cCCceEe
Done!