Query 009060
Match_columns 545
No_of_seqs 222 out of 1415
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 17:55:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wvg_A PDC, pyruvate decarboxy 100.0 5.3E-92 1.8E-96 768.5 44.7 513 25-540 1-518 (568)
2 2vbi_A Pyruvate decarboxylase; 100.0 2.5E-91 8.4E-96 762.9 47.1 510 25-540 1-510 (566)
3 2vk8_A Pyruvate decarboxylase 100.0 3.4E-91 1.2E-95 761.7 41.7 511 24-540 1-518 (563)
4 2vbf_A Branched-chain alpha-ke 100.0 7.5E-89 2.6E-93 743.9 41.8 502 27-540 25-528 (570)
5 3eya_A Pyruvate dehydrogenase 100.0 6.5E-89 2.2E-93 740.8 39.3 491 25-540 1-507 (549)
6 1ovm_A Indole-3-pyruvate decar 100.0 7.7E-89 2.6E-93 741.8 39.1 504 26-540 4-510 (552)
7 2nxw_A Phenyl-3-pyruvate decar 100.0 1.3E-88 4.4E-93 740.5 40.2 514 7-540 1-519 (565)
8 4feg_A Pyruvate oxidase; carba 100.0 2.6E-87 8.8E-92 735.2 41.7 497 24-540 8-522 (603)
9 1t9b_A Acetolactate synthase, 100.0 4.9E-87 1.7E-91 737.9 42.7 500 24-540 79-615 (677)
10 1ybh_A Acetolactate synthase, 100.0 3E-87 1E-91 733.8 40.1 493 26-540 11-536 (590)
11 2pgn_A Cyclohexane-1,2-dione h 100.0 4.7E-87 1.6E-91 731.7 39.0 497 24-540 1-525 (589)
12 1ozh_A ALS, acetolactate synth 100.0 9.6E-87 3.3E-91 725.9 40.5 491 27-540 11-521 (566)
13 2uz1_A Benzaldehyde lyase; thi 100.0 1.2E-86 4E-91 725.6 31.7 494 24-540 1-524 (563)
14 1q6z_A BFD, BFDC, benzoylforma 100.0 1.8E-85 6.2E-90 711.2 39.5 487 27-540 2-503 (528)
15 2pan_A Glyoxylate carboligase; 100.0 2.3E-85 8E-90 722.3 39.5 496 26-540 26-554 (616)
16 1v5e_A Pyruvate oxidase; oxido 100.0 1E-84 3.6E-89 712.8 41.0 488 26-540 3-514 (590)
17 2iht_A Carboxyethylarginine sy 100.0 1.9E-85 6.6E-90 717.0 34.6 495 26-540 11-539 (573)
18 2x7j_A 2-succinyl-5-enolpyruvy 100.0 2.6E-85 8.8E-90 719.9 31.1 495 27-540 31-558 (604)
19 2q28_A Oxalyl-COA decarboxylas 100.0 2.2E-84 7.6E-89 708.1 30.3 490 25-540 6-522 (564)
20 3lq1_A 2-succinyl-5-enolpyruvy 100.0 2.9E-84 9.9E-89 708.1 28.8 493 26-540 10-538 (578)
21 2c31_A Oxalyl-COA decarboxylas 100.0 5.3E-84 1.8E-88 705.4 30.0 491 24-540 7-525 (568)
22 3hww_A 2-succinyl-5-enolpyruvy 100.0 4.7E-81 1.6E-85 679.7 24.6 482 26-540 7-517 (556)
23 3cf4_G Acetyl-COA decarboxylas 99.8 5.7E-22 2E-26 181.0 0.1 136 224-362 23-167 (170)
24 1ytl_A Acetyl-COA decarboxylas 99.6 1.4E-17 4.8E-22 150.9 -0.5 102 225-334 24-142 (174)
25 1yd7_A 2-keto acid:ferredoxin 99.6 1.4E-15 4.9E-20 157.1 10.5 165 24-196 20-191 (395)
26 2c42_A Pyruvate-ferredoxin oxi 99.6 1.7E-15 5.9E-20 175.4 11.1 156 24-191 4-171 (1231)
27 2bfd_A 2-oxoisovalerate dehydr 99.3 2.6E-12 8.8E-17 132.4 6.6 86 436-526 159-250 (400)
28 1w85_A Pyruvate dehydrogenase 99.3 3.8E-12 1.3E-16 129.6 7.3 87 435-526 138-230 (368)
29 1umd_A E1-alpha, 2-OXO acid de 99.3 2.3E-12 7.8E-17 131.7 5.5 89 440-538 149-239 (367)
30 2o1x_A 1-deoxy-D-xylulose-5-ph 99.2 5.2E-12 1.8E-16 138.3 6.0 107 391-498 56-187 (629)
31 3mos_A Transketolase, TK; thia 99.2 6.7E-12 2.3E-16 136.5 6.0 86 436-526 118-211 (616)
32 1qs0_A 2-oxoisovalerate dehydr 99.2 1.5E-11 5E-16 126.7 7.6 86 436-526 178-270 (407)
33 3l84_A Transketolase; TKT, str 99.2 1.3E-11 4.5E-16 134.0 7.0 86 436-526 111-209 (632)
34 3kom_A Transketolase; rossmann 99.2 1.4E-11 4.7E-16 134.7 7.2 86 436-526 113-214 (663)
35 3uk1_A Transketolase; structur 99.2 1.2E-11 4.1E-16 135.7 6.5 86 436-526 152-253 (711)
36 3m49_A Transketolase; alpha-be 99.2 2.6E-11 9E-16 132.8 7.3 85 436-525 137-237 (690)
37 2r8o_A Transketolase 1, TK 1; 99.1 3E-11 1E-15 132.8 6.6 87 435-526 110-212 (669)
38 2e6k_A Transketolase; structur 99.1 3.3E-11 1.1E-15 132.1 5.6 87 435-526 114-216 (651)
39 2o1s_A 1-deoxy-D-xylulose-5-ph 99.1 3.4E-11 1.2E-15 131.7 5.5 107 391-498 54-185 (621)
40 1itz_A Transketolase; calvin c 99.1 4.5E-11 1.5E-15 131.5 6.3 86 436-526 124-225 (675)
41 1gpu_A Transketolase; transfer 99.1 4.2E-11 1.4E-15 131.9 5.5 86 436-526 113-214 (680)
42 2ozl_A PDHE1-A type I, pyruvat 99.0 1.5E-10 5E-15 117.6 6.0 84 436-526 137-226 (365)
43 1r9j_A Transketolase; domains, 99.0 3.3E-10 1.1E-14 124.5 6.2 86 436-526 113-214 (673)
44 3rim_A Transketolase, TK; TPP, 98.5 1.3E-08 4.6E-13 111.3 1.2 86 436-526 130-234 (700)
45 2yic_A 2-oxoglutarate decarbox 98.3 1.4E-07 4.8E-12 105.5 1.7 91 434-529 240-350 (868)
46 2c42_A Pyruvate-ferredoxin oxi 98.2 1E-05 3.5E-10 94.1 16.0 134 393-526 816-1035(1231)
47 2jgd_A 2-oxoglutarate dehydrog 98.1 1.5E-06 5E-11 97.9 4.2 87 436-527 318-420 (933)
48 2xt6_A 2-oxoglutarate decarbox 98.0 9.8E-07 3.4E-11 101.3 1.9 88 435-527 486-593 (1113)
49 2qtc_A Pyruvate dehydrogenase 98.0 5.5E-06 1.9E-10 92.9 6.8 85 436-525 189-288 (886)
50 1umd_B E1-beta, 2-OXO acid deh 95.8 0.46 1.6E-05 47.0 18.2 115 67-196 52-178 (324)
51 1qs0_B 2-oxoisovalerate dehydr 95.5 0.02 6.9E-07 57.2 7.0 156 26-196 4-179 (338)
52 3ahc_A Phosphoketolase, xylulo 95.5 0.011 3.8E-07 65.4 5.1 84 437-525 173-263 (845)
53 1w85_B Pyruvate dehydrogenase 95.3 0.47 1.6E-05 46.9 16.2 116 66-196 50-177 (324)
54 2bfd_B 2-oxoisovalerate dehydr 95.3 0.064 2.2E-06 53.6 9.7 157 25-196 19-195 (342)
55 2ozl_B PDHE1-B, pyruvate dehyd 94.9 0.087 3E-06 52.6 9.5 113 66-193 62-186 (341)
56 3mos_A Transketolase, TK; thia 94.8 1.8 6.1E-05 46.7 20.2 151 30-193 320-473 (616)
57 1ik6_A Pyruvate dehydrogenase; 94.0 0.14 4.7E-06 51.7 8.5 157 25-196 49-225 (369)
58 2o1s_A 1-deoxy-D-xylulose-5-ph 93.3 0.78 2.7E-05 49.6 13.7 152 26-194 318-480 (621)
59 2r8o_A Transketolase 1, TK 1; 93.3 0.8 2.7E-05 50.0 13.7 117 66-193 402-521 (669)
60 3l84_A Transketolase; TKT, str 92.1 0.86 3E-05 49.2 11.8 115 67-193 383-500 (632)
61 2o1x_A 1-deoxy-D-xylulose-5-ph 91.9 1 3.5E-05 48.8 12.2 151 26-194 321-482 (629)
62 2e6k_A Transketolase; structur 91.4 0.97 3.3E-05 49.2 11.3 117 66-193 397-516 (651)
63 3kom_A Transketolase; rossmann 90.8 1.7 6E-05 47.1 12.6 115 67-193 404-522 (663)
64 1d4o_A NADP(H) transhydrogenas 90.7 0.082 2.8E-06 45.9 1.5 78 225-312 12-107 (184)
65 1pno_A NAD(P) transhydrogenase 90.5 0.075 2.6E-06 46.0 1.2 78 225-312 13-108 (180)
66 1efv_A Electron transfer flavo 90.1 0.63 2.1E-05 45.7 7.6 111 239-364 200-314 (315)
67 1djl_A Transhydrogenase DIII; 90.1 0.087 3E-06 46.9 1.2 77 226-312 36-130 (207)
68 1o97_D Electron transferring f 89.9 0.45 1.5E-05 46.8 6.3 111 239-363 205-319 (320)
69 2bru_C NAD(P) transhydrogenase 89.8 0.073 2.5E-06 46.2 0.5 89 224-312 19-115 (186)
70 2fsv_C NAD(P) transhydrogenase 89.6 0.086 3E-06 46.7 0.8 78 225-312 36-131 (203)
71 1s5p_A NAD-dependent deacetyla 89.1 0.37 1.3E-05 45.3 4.8 68 295-362 160-230 (235)
72 1gpu_A Transketolase; transfer 88.7 1.4 4.7E-05 48.2 9.8 117 66-193 409-529 (680)
73 1r9j_A Transketolase; domains, 88.5 2.6 9E-05 45.9 11.8 117 66-193 402-521 (673)
74 1itz_A Transketolase; calvin c 88.3 2.4 8.2E-05 46.2 11.4 117 66-193 414-534 (675)
75 1w85_A Pyruvate dehydrogenase 88.2 0.92 3.1E-05 45.6 7.4 113 77-195 147-268 (368)
76 2hjh_A NAD-dependent histone d 87.9 0.74 2.5E-05 46.0 6.4 69 296-364 249-318 (354)
77 3uk1_A Transketolase; structur 87.8 2.9 0.0001 45.7 11.5 115 67-193 449-566 (711)
78 1efp_A ETF, protein (electron 85.5 1.4 4.9E-05 42.9 6.9 109 239-362 195-307 (307)
79 1yc5_A NAD-dependent deacetyla 85.3 0.75 2.6E-05 43.4 4.6 69 295-363 173-244 (246)
80 3pki_A NAD-dependent deacetyla 85.1 1.4 4.8E-05 43.6 6.5 70 295-364 199-271 (355)
81 1m2k_A Silent information regu 85.0 0.98 3.4E-05 42.7 5.3 68 295-362 170-240 (249)
82 1qs0_A 2-oxoisovalerate dehydr 84.9 1.7 5.7E-05 44.3 7.3 111 78-194 187-307 (407)
83 3k35_A NAD-dependent deacetyla 84.7 1.3 4.5E-05 43.2 6.1 70 295-364 199-271 (318)
84 3lq1_A 2-succinyl-5-enolpyruvy 83.7 1.1 3.9E-05 47.9 5.7 112 77-194 441-560 (578)
85 3hww_A 2-succinyl-5-enolpyruvy 83.5 1.2 4E-05 47.5 5.7 124 65-193 406-538 (556)
86 4iao_A NAD-dependent histone d 83.2 1.6 5.6E-05 45.0 6.3 69 296-364 387-456 (492)
87 1v5e_A Pyruvate oxidase; oxido 83.1 2.9 0.0001 44.8 8.7 114 77-194 418-539 (590)
88 1ma3_A SIR2-AF2, transcription 83.1 1 3.5E-05 42.7 4.5 68 295-362 176-246 (253)
89 3m49_A Transketolase; alpha-be 83.1 6.3 0.00021 42.9 11.3 115 67-193 428-546 (690)
90 2ozl_A PDHE1-A type I, pyruvat 82.8 3.7 0.00013 41.0 8.7 108 79-194 147-263 (365)
91 3rim_A Transketolase, TK; TPP, 82.5 4.8 0.00016 43.9 10.0 157 25-193 373-553 (700)
92 1q1a_A HST2 protein; ternary c 81.6 1.2 4.2E-05 43.0 4.5 66 299-364 208-279 (289)
93 3riy_A NAD-dependent deacetyla 81.3 1.5 5.1E-05 42.1 4.9 65 295-359 205-272 (273)
94 2pan_A Glyoxylate carboligase; 81.2 2.2 7.5E-05 46.0 6.8 120 74-194 444-580 (616)
95 3glr_A NAD-dependent deacetyla 80.1 3.8 0.00013 39.4 7.4 69 297-365 192-266 (285)
96 3eya_A Pyruvate dehydrogenase 80.0 12 0.0004 39.6 11.9 125 65-194 396-529 (549)
97 2bfd_A 2-oxoisovalerate dehydr 79.1 4.5 0.00015 41.0 7.9 109 79-193 169-286 (400)
98 1q14_A HST2 protein; histone d 78.7 2.7 9.1E-05 42.0 5.9 66 299-364 216-287 (361)
99 1j8f_A SIRT2, sirtuin 2, isofo 78.4 2.9 9.8E-05 41.1 6.0 70 295-364 213-304 (323)
100 1ozh_A ALS, acetolactate synth 76.6 5.1 0.00017 42.6 7.9 122 65-194 410-543 (566)
101 2pgn_A Cyclohexane-1,2-dione h 74.6 17 0.00058 38.7 11.4 140 47-194 396-547 (589)
102 1q6z_A BFD, BFDC, benzoylforma 74.4 6.4 0.00022 41.4 7.8 148 40-193 366-524 (528)
103 4feg_A Pyruvate oxidase; carba 73.0 27 0.00092 37.3 12.5 153 38-194 382-546 (603)
104 2wvg_A PDC, pyruvate decarboxy 72.6 4.9 0.00017 42.7 6.5 111 76-193 417-540 (568)
105 2c31_A Oxalyl-COA decarboxylas 72.1 8 0.00027 41.1 8.0 113 76-194 430-547 (568)
106 2vbi_A Pyruvate decarboxylase; 71.1 3.7 0.00013 43.7 5.1 110 76-193 413-532 (566)
107 2iht_A Carboxyethylarginine sy 70.5 17 0.00059 38.5 10.2 159 27-193 385-560 (573)
108 2uz1_A Benzaldehyde lyase; thi 69.4 21 0.00073 37.6 10.6 156 33-193 375-545 (563)
109 1t9b_A Acetolactate synthase, 68.5 39 0.0013 36.6 12.6 109 77-194 518-637 (677)
110 2q28_A Oxalyl-COA decarboxylas 68.3 9.6 0.00033 40.4 7.6 112 76-194 425-544 (564)
111 1umd_A E1-alpha, 2-OXO acid de 68.3 25 0.00087 34.9 10.3 96 93-194 169-269 (367)
112 2x7j_A 2-succinyl-5-enolpyruvy 67.5 2.4 8.2E-05 45.6 2.6 124 65-193 445-579 (604)
113 1ybh_A Acetolactate synthase, 63.0 43 0.0015 35.5 11.5 117 73-194 427-558 (590)
114 3c2q_A Uncharacterized conserv 62.8 5.1 0.00017 38.7 3.5 101 255-363 230-339 (345)
115 1e2b_A Enzyme IIB-cellobiose; 59.6 5.1 0.00018 32.2 2.6 32 236-267 4-35 (106)
116 3i9v_3 NADH-quinone oxidoreduc 59.6 13 0.00043 41.3 6.6 80 220-313 321-402 (783)
117 1ovm_A Indole-3-pyruvate decar 58.0 8.7 0.0003 40.6 4.8 108 76-193 412-531 (552)
118 2nxw_A Phenyl-3-pyruvate decar 57.3 7.5 0.00026 41.3 4.2 107 77-193 427-541 (565)
119 2iv2_X Formate dehydrogenase H 55.0 6.1 0.00021 43.3 3.1 115 221-339 80-207 (715)
120 2vbf_A Branched-chain alpha-ke 54.1 65 0.0022 33.9 10.9 108 77-193 430-550 (570)
121 2hy5_A Putative sulfurtransfer 54.1 34 0.0012 28.2 7.0 88 222-311 18-130 (130)
122 3u31_A SIR2A, transcriptional 52.6 5.8 0.0002 38.2 2.1 46 295-340 209-256 (290)
123 2qtc_A Pyruvate dehydrogenase 52.4 77 0.0026 35.5 11.4 175 67-266 563-753 (886)
124 2ivf_A Ethylbenzene dehydrogen 48.3 2.5 8.5E-05 48.3 -1.5 117 220-340 162-288 (976)
125 1tk9_A Phosphoheptose isomeras 43.7 1.2E+02 0.004 26.2 9.3 98 29-126 31-148 (188)
126 3trj_A Phosphoheptose isomeras 42.6 1E+02 0.0036 27.3 8.9 101 28-128 34-154 (201)
127 3nbm_A PTS system, lactose-spe 42.1 9.7 0.00033 30.7 1.6 33 236-268 7-39 (108)
128 2d1p_A TUSD, hypothetical UPF0 40.1 76 0.0026 26.6 7.0 87 221-309 29-140 (140)
129 1hqk_A 6,7-dimethyl-8-ribityll 38.5 69 0.0023 27.5 6.5 33 31-63 32-69 (154)
130 4au1_A Precorrin-8X methylmuta 37.7 35 0.0012 31.3 4.7 54 221-274 157-212 (229)
131 2xbl_A Phosphoheptose isomeras 37.2 1.7E+02 0.0057 25.4 9.4 100 29-128 37-156 (198)
132 2l2q_A PTS system, cellobiose- 37.0 39 0.0013 26.9 4.5 30 237-266 6-35 (109)
133 3fxa_A SIS domain protein; str 36.8 44 0.0015 29.6 5.3 48 221-269 30-77 (201)
134 1rvv_A Riboflavin synthase; tr 36.7 67 0.0023 27.5 6.1 32 31-62 32-68 (154)
135 2vk8_A Pyruvate decarboxylase 36.0 22 0.00074 37.6 3.6 107 77-193 418-541 (563)
136 3iz6_A 40S ribosomal protein S 35.5 1.4E+02 0.005 28.4 8.7 73 223-314 60-134 (305)
137 3jx9_A Putative phosphoheptose 35.4 1.2E+02 0.0042 26.3 7.8 87 27-127 25-116 (170)
138 2m1z_A LMO0427 protein; homolo 33.5 50 0.0017 26.4 4.5 92 242-363 11-104 (106)
139 3czc_A RMPB; alpha/beta sandwi 33.3 33 0.0011 27.4 3.5 30 236-265 19-49 (110)
140 1yd7_A 2-keto acid:ferredoxin 33.2 23 0.00078 35.7 3.0 53 443-497 75-127 (395)
141 1tvm_A PTS system, galactitol- 33.0 18 0.0006 29.3 1.8 31 236-266 22-53 (113)
142 1x92_A APC5045, phosphoheptose 32.5 1.2E+02 0.004 26.6 7.5 98 29-127 34-152 (199)
143 2ioj_A Hypothetical protein AF 32.4 40 0.0014 28.0 4.1 33 236-271 74-106 (139)
144 2xzm_B RPS0E; ribosome, transl 30.5 1.3E+02 0.0043 27.9 7.3 73 223-314 51-126 (241)
145 1c2y_A Protein (lumazine synth 30.4 1.3E+02 0.0045 25.7 6.9 58 31-88 33-104 (156)
146 2zxr_A Single-stranded DNA spe 30.1 1.1E+02 0.0037 33.0 7.8 85 221-316 58-142 (666)
147 2keg_A PLNK; protein, peptide, 30.0 23 0.00079 20.5 1.3 14 439-452 6-19 (32)
148 3bch_A 40S ribosomal protein S 29.7 1.8E+02 0.0063 26.9 8.3 73 223-314 89-163 (253)
149 2jgd_A 2-oxoglutarate dehydrog 28.8 1.6E+02 0.0055 33.1 9.1 127 57-196 642-783 (933)
150 1vi6_A 30S ribosomal protein S 28.6 1.4E+02 0.0048 26.9 7.1 73 223-314 54-127 (208)
151 2yva_A DNAA initiator-associat 28.5 2.1E+02 0.007 24.8 8.4 100 28-127 29-148 (196)
152 3e7d_A COBH, precorrin-8X meth 28.4 69 0.0024 29.0 5.0 54 221-274 140-195 (212)
153 2r48_A Phosphotransferase syst 27.5 58 0.002 26.0 3.9 68 249-337 19-86 (106)
154 1di0_A Lumazine synthase; tran 27.3 88 0.003 26.9 5.3 32 31-62 30-66 (158)
155 1hi9_A Dciaa, dipeptide transp 27.2 56 0.0019 30.9 4.3 141 30-181 39-203 (274)
156 1q16_A Respiratory nitrate red 27.2 46 0.0016 38.8 4.5 115 221-339 163-287 (1247)
157 3s99_A Basic membrane lipoprot 25.8 2.9E+02 0.0099 26.9 9.6 40 31-70 76-115 (356)
158 1ma3_A SIR2-AF2, transcription 25.6 42 0.0014 31.4 3.2 26 223-248 3-28 (253)
159 2r4q_A Phosphotransferase syst 25.2 59 0.002 25.9 3.5 68 249-337 19-86 (106)
160 3bfj_A 1,3-propanediol oxidore 24.8 80 0.0027 31.4 5.4 65 235-311 33-101 (387)
161 1x2l_A CUT-like 2, homeobox pr 24.7 74 0.0025 25.1 3.9 36 8-43 1-36 (101)
162 3ff4_A Uncharacterized protein 24.4 69 0.0024 26.1 4.0 40 30-70 71-110 (122)
163 2kyr_A Fructose-like phosphotr 24.4 70 0.0024 25.7 3.8 89 243-361 15-105 (111)
164 1rrm_A Lactaldehyde reductase; 24.2 62 0.0021 32.2 4.4 65 235-311 31-97 (386)
165 2yic_A 2-oxoglutarate decarbox 24.1 74 0.0025 35.5 5.3 97 91-193 278-383 (868)
166 2nap_A Protein (periplasmic ni 23.9 8.3 0.00028 42.3 -2.4 116 222-339 82-209 (723)
167 2zkq_b 40S ribosomal protein S 23.9 2.8E+02 0.0096 26.4 8.5 73 223-314 56-130 (295)
168 3u5c_A 40S ribosomal protein S 23.8 2.5E+02 0.0085 26.1 8.0 73 223-314 55-129 (252)
169 2e7z_A Acetylene hydratase AHY 23.4 17 0.00057 39.9 -0.1 105 222-335 81-198 (727)
170 2gk4_A Conserved hypothetical 23.3 80 0.0028 29.0 4.6 63 429-495 19-93 (232)
171 4gnr_A ABC transporter substra 23.0 1.5E+02 0.0053 28.2 7.0 56 227-284 65-120 (353)
172 1u7z_A Coenzyme A biosynthesis 22.8 90 0.0031 28.5 4.8 121 405-536 7-151 (226)
173 2obx_A DMRL synthase 1, 6,7-di 22.5 96 0.0033 26.6 4.6 28 31-58 31-62 (157)
174 2csu_A 457AA long hypothetical 21.8 1.2E+02 0.0042 30.8 6.2 141 25-192 72-238 (457)
175 3bzy_B ESCU; auto cleavage pro 21.5 67 0.0023 24.3 3.0 32 236-270 16-47 (83)
176 2xhz_A KDSD, YRBH, arabinose 5 21.4 80 0.0028 27.2 4.1 44 224-268 37-80 (183)
177 2vpz_A Thiosulfate reductase; 21.3 30 0.001 38.1 1.4 107 222-339 118-241 (765)
178 2xt6_A 2-oxoglutarate decarbox 20.9 96 0.0033 35.7 5.5 97 91-193 523-628 (1113)
179 1h0h_A Formate dehydrogenase ( 20.8 12 0.00043 42.5 -1.8 112 222-335 89-221 (977)
180 3v7e_A Ribosome-associated pro 20.8 1.1E+02 0.0037 22.9 4.1 44 226-270 17-60 (82)
181 1wiz_A DNA-binding protein SAT 20.5 1.2E+02 0.0042 23.9 4.4 34 7-43 3-36 (101)
182 3sho_A Transcriptional regulat 20.2 3.9E+02 0.013 22.6 8.5 90 30-127 29-126 (187)
183 3ox4_A Alcohol dehydrogenase 2 20.2 56 0.0019 32.5 3.1 77 224-312 18-98 (383)
No 1
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=100.00 E-value=5.3e-92 Score=768.49 Aligned_cols=513 Identities=42% Similarity=0.725 Sum_probs=434.5
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcchHHH
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV 104 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~ 104 (545)
|+|+++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||+|+||++||++|+|||++|+
T Consensus 1 m~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N~ 80 (568)
T 2wvg_A 1 MSYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSA 80 (568)
T ss_dssp -CEEHHHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHSCEEEEECTTTTHHHH
T ss_pred CCcCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhccCCceEeccCcHHHHHHHHHHHHHhhCCeEEEEeCCCCHHHH
Confidence 46899999999999999999999999999999999987668999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCC
Q 009060 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (545)
Q Consensus 105 ~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~G 184 (545)
++||++|+.+++|||+|||+++....+++..+||.++.+|++||.++++++|||+.++++++++++.+++||+.|.+++|
T Consensus 81 ~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~G 160 (568)
T 2wvg_A 81 FDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKK 160 (568)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSCEEEECSGGGHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeEEEEeCCHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999988887777777666677799999999999999999999999999999999999889
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCC
Q 009060 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (545)
Q Consensus 185 PV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~ 264 (545)
||||+||.|++.. +.......+....+.......+++.+++++++|.++|||+|++|.|+.++++.+++++|+|++++
T Consensus 161 PV~l~iP~dv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~ 238 (568)
T 2wvg_A 161 PVYLEIACNIASM--PCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGG 238 (568)
T ss_dssp CEEEEEEGGGTTS--EECEECCTHHHHCCCCCCHHHHHHHHHHHHHHHTTCCCEEEEECTTTTTTTCHHHHHHHHHHHCC
T ss_pred CEEEEechhHhcC--cccCCCcccccccCCCCCccccHHHHHHHHHHHHhCCCCEEEECccccccchHHHHHHHHHHhCC
Confidence 9999999999763 21110011110111111122345679999999999999999999999998999999999999999
Q ss_pred ceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecCCC
Q 009060 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (545)
Q Consensus 265 Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~ 344 (545)
||++|++|||.||++||+++|.|.|..+++.++++++++|+||.+|+++.++.+..|..+.++.++||||.|+.+++ +.
T Consensus 239 Pv~~t~~~kg~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~ 317 (568)
T 2wvg_A 239 AVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVN-GI 317 (568)
T ss_dssp EEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHHCSEEEEESCCCBTTTTTTTTCCCCTTTEEEECSSEEEET-TE
T ss_pred CEEEchhcCccCCCCCCceeccccCCcCCHHHHHHHHhCCEEEEECCCcccccccccccCCCCCcEEEEeCChhhcC-Ce
Confidence 99999999999999999999998788888888999999999999999998888777766556789999999999997 55
Q ss_pred ccccccHHHHHHHHHHHhccCchhhhhhhhhcC-CCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcccccccc
Q 009060 345 SLGWVFMADFLSALAKKLRKNTTALENYRRIYV-PPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQK 423 (545)
Q Consensus 345 ~~~~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~ 423 (545)
.+.+++++.+|++|.+.++.+...|..|.+... ............++++.++++.|.+.+|++++++.|+|++.+...+
T Consensus 318 ~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~ 397 (568)
T 2wvg_A 318 RFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQR 397 (568)
T ss_dssp EEESCCHHHHHHHHHHHCCCCCHHHHHHHHTTCCSCCCCCCCCTTSBCCHHHHHHHHHTTCCTTEEEEECSSHHHHHHHT
T ss_pred ecCCCCHHHHHHHHHHhccccccchhhhhhhhhhcccccccCCCCCccCHHHHHHHHHHhCCCCCEEEEcCcHHHHHHhh
Confidence 666778999999999887643333444543221 1111111122457999999999999999999999999998755556
Q ss_pred ccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc
Q 009060 424 LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH 503 (545)
Q Consensus 424 ~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~ 503 (545)
+..+++.+++.+.++|+||+++|+|+|+++|+|+++||+++|||+|+|+++||+|++++++|+++||+||++|++.+.++
T Consensus 398 ~~~~~~~~~~~~~~~g~~G~~l~~A~G~ala~~~~~vv~i~GDGs~~~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~ 477 (568)
T 2wvg_A 398 MKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIH 477 (568)
T ss_dssp CCCCTTCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEECSSCHHHHTTS
T ss_pred cccCCCCeEEeCCCcchhhhHHHHHHHHHHhCCCCcEEEEEcChhHhccHHHHHHHHHcCCCcEEEEEECCcceEeeeec
Confidence 66777778999999999999999999999999999999999999999999999999999999999999999999954444
Q ss_pred CCCCCCCCCCCHHHHHHHcCCCC----CceeEEEEeeceee
Q 009060 504 DGPYNVIKNWDYTGLVNAIHNGE----GKCWTAKVSIYKMC 540 (545)
Q Consensus 504 ~~~~~~l~~~d~~~lA~a~G~~~----~~~~~~~v~~~~~~ 540 (545)
+..|.+++++||.++|++||++. ....+++|++.+|+
T Consensus 478 ~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~~~~el 518 (568)
T 2wvg_A 478 DGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGEL 518 (568)
T ss_dssp CCGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEESBHHHH
T ss_pred cCCCcCCCCCCHHHHHHHhCCCcccccCCcceEEeCCHHHH
Confidence 44566778899999999999930 11246788887775
No 2
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=100.00 E-value=2.5e-91 Score=762.94 Aligned_cols=510 Identities=44% Similarity=0.743 Sum_probs=433.7
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcchHHH
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV 104 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~ 104 (545)
|+|+++++|++.|+++||++|||+||+++++|++++.++++|++|.++||++|+|||+||+|+||++||++|+|||++|+
T Consensus 1 m~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N~ 80 (566)
T 2vbi_A 1 MTYTVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARSNGAAAAVVTFSVGAISA 80 (566)
T ss_dssp -CCBHHHHHHHHHHHHTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHSCEEEEECTTTTHHHH
T ss_pred CccCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhcCCCCeEEeeCcHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHH
Confidence 35899999999999999999999999999999999987668999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCC
Q 009060 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (545)
Q Consensus 105 ~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~G 184 (545)
++||++|+.+++|||+|||+++....+++..+||..+.+|++||.++++++|||+.++++++++++.+++||+.|.+++|
T Consensus 81 ~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~G 160 (566)
T 2vbi_A 81 MNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERK 160 (566)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999988887777777755677799999999999999999999999999999999999889
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCC
Q 009060 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (545)
Q Consensus 185 PV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~ 264 (545)
||||+||.|++.. +.......+....+......++.+.+++++++|.++|||+|++|.|+.++++.+++++|+|++++
T Consensus 161 PV~l~iP~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~ 238 (566)
T 2vbi_A 161 PAYLDIACNIASE--PCVRPGPVSSLLSEPEIDHTSLKAAVDATVALLEKSASPVMLLGSKLRAANALAATETLADKLQC 238 (566)
T ss_dssp CEEEEEETTTTTS--BCCEECCCSCSCCCBCCCHHHHHHHHHHHHHHHHTCSCEEEEECTTTTTTTCHHHHHHHHHHHCC
T ss_pred CEEEEechhhcCC--eecCCCCCcccCCCCCCCcchHHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHHHhCC
Confidence 9999999999763 22110011111111111122345679999999999999999999999999999999999999999
Q ss_pred ceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecCCC
Q 009060 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (545)
Q Consensus 265 Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~ 344 (545)
||++|++|||.||++||+++|.|.|..+++.++++++++|+||.+|+++.++.+..|..+.++.++||||.|+.+++ +.
T Consensus 239 Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~ 317 (566)
T 2vbi_A 239 AVTIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFNDYSTVGWSAWPKGPNVILAEPDRVTVD-GR 317 (566)
T ss_dssp EEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHTCSEEEEESCCCBTTTTTTTTSCCCSTTEEEECSSEEEET-TE
T ss_pred CEEEccccCccCCCCCccccccccCccCCHHHHHHHHhCCEEEEECCCccccccccccccCCCCcEEEEeCChheeC-Cc
Confidence 99999999999999999999998788888889999999999999999999888877766657789999999999997 55
Q ss_pred ccccccHHHHHHHHHHHhccCchhhhhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccccccc
Q 009060 345 SLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKL 424 (545)
Q Consensus 345 ~~~~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~ 424 (545)
.+.+++++.+|++|.+.+......|..|.+.... . . ......++++..+++.|.+.+|++++++.|+|++.+...++
T Consensus 318 ~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~-~-~-~~~~~~~l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~ 394 (566)
T 2vbi_A 318 AYDGFTLRAFLQALAEKAPARPASAQKSSVPTCS-L-T-ATSDEAGLTNDEIVRHINALLTSNTTLVAETGDSWFNAMRM 394 (566)
T ss_dssp EEESSCHHHHHHHHHHHCCCCCHHHHTSCCCCCC-C-C-CCCTTSCCCHHHHHHHHHHHCCTTEEEEECSSHHHHHHHTC
T ss_pred ccCCccHHHHHHHHHHhccccccchhhhhhhhhc-c-C-CCCCCCccCHHHHHHHHHHhcCCCCEEEECCchHHHhhhhe
Confidence 5667788999999998876433333334321111 0 1 11233569999999999999999999999999986555566
Q ss_pred cccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcC
Q 009060 425 RLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHD 504 (545)
Q Consensus 425 ~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~~ 504 (545)
..+++.+++.+.++|+||+++|+|+|++++.|+++||+++|||+|+|+++||+|++++++|+++||+||++|++.+.+++
T Consensus 395 ~~~~~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~~~GDG~~~~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~ 474 (566)
T 2vbi_A 395 TLPRGARVELEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVGDGSFQLTAQEVAQMVRYELPVIIFLINNRGYVIEIAIHD 474 (566)
T ss_dssp CCCTTCEEECCTTTCCTTTHHHHHHHHHHTCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSC
T ss_pred ECCCCCEEEecCcccchhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHHHHHHHHHhCCCcEEEEEECCcceEEEeecc
Confidence 66667779989999999999999999999999999999999999999999999999999999999999999999554444
Q ss_pred CCCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 505 GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 505 ~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
..|.+++++||.++|++||++.....+++|++.+|+
T Consensus 475 ~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~~~~el 510 (566)
T 2vbi_A 475 GPYNYIKNWDYAGLMEVFNAGEGHGLGLKATTPKEL 510 (566)
T ss_dssp CGGGCCCCCCTTTHHHHHHTTTCCCEEEEECSHHHH
T ss_pred CCccCCCCCCHHHHHHHcCCCCCCccEEEeCCHHHH
Confidence 456677889999999999993233357788887776
No 3
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=100.00 E-value=3.4e-91 Score=761.73 Aligned_cols=511 Identities=33% Similarity=0.512 Sum_probs=429.5
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcchHH
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLS 103 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n 103 (545)
+++|+++++|++.|+++||++|||+||+++++|++++.++++|++|.++||++|+|||+||+|+||++||++|+|||++|
T Consensus 1 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N 80 (563)
T 2vk8_A 1 MSEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSCIITTFGVGELS 80 (563)
T ss_dssp -CEEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHGGGGSTTCEECCCSSHHHHHHHHHHHHHHHSCEEEEEETTHHHHH
T ss_pred CCccCHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCceEEccCchHHHHHHHHHHHHhhCCcEEEEcCCCcHHH
Confidence 35689999999999999999999999999999999998766899999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCC
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKES 183 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~ 183 (545)
+++||++||.+++|||+|||++++...+++..+||.++...+.+|.++++++|||+.++++++++++.+++|++.|.+++
T Consensus 81 ~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~ 160 (563)
T 2vk8_A 81 ALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQ 160 (563)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchHHHHHHhhhhEEEEEEeCCHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999987777777888876555557899999999999999999999999999999999878
Q ss_pred CcEEEEeCCCCCCCCCCCCC-CCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHh
Q 009060 184 KPVYISISCNLPGIPHPTFA-RDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (545)
Q Consensus 184 GPV~l~iP~dv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~ 262 (545)
|||||+||.|++..+.+... ..+... .........+++.+++++++|.+||||+|++|+|+.++++.+++++|+|++
T Consensus 161 GPV~l~iP~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~ 238 (563)
T 2vk8_A 161 RPVYLGLPANLVDLNVPAKLLQTPIDM--SLKPNDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDLT 238 (563)
T ss_dssp SCEEEEEETTGGGSEEEGGGGGSCCCC--SCCCCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHH
T ss_pred CCEEEEechhhhcCccCCccCcCcccc--cCCCCCchhhHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHHHh
Confidence 99999999999763111100 001111 111111223456799999999999999999999999889999999999999
Q ss_pred CCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecC
Q 009060 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (545)
Q Consensus 263 ~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (545)
++||++|++|||.||++||+++|.|.|..+++.++++++++|+||.+|++++++.+..|..+.++.++||||.|+.+++
T Consensus 239 ~~Pv~~t~~g~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~- 317 (563)
T 2vk8_A 239 QFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKIR- 317 (563)
T ss_dssp CCCEEECTTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHTCSEEEEESCCCCTTTTTTTCCCCCCSCEEEECSSEEEET-
T ss_pred CCCEEECcccCccCCCCCCcccccccCccCCHHHHHHHHhCCEEEEECCCCccccccccccCCCCCeEEEEeCCceEEC-
Confidence 9999999999999999999999987788888999999999999999999999888877765556779999999999997
Q ss_pred CCccccccHHHHHHHHHHHhccCchhhhhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccccc
Q 009060 343 GPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQ 422 (545)
Q Consensus 343 ~~~~~~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~ 422 (545)
+....+++++.+|++|.+.+......|..+.+.+ ............++++.++++.|++.+|++++++.|+|++.++..
T Consensus 318 ~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~ 396 (563)
T 2vk8_A 318 NATFPGVQMKFVLQKLLTTIADAAKGYKPVAVPA-RTPANAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGIN 396 (563)
T ss_dssp TEEEETCCHHHHHHHHHHHHHHHTTTCCCCCCCC-CCCCCCCCCTTCBCCHHHHHHHHTTTCCTTCEEEECTTHHHHHGG
T ss_pred CcccCCcCHHHHHHHHHHhhccccchhhhhhhhh-hcccccCCCCCCCcCHHHHHHHHHHhCCCCCEEEECCchHHHHHh
Confidence 5556677889999999887753221111111000 000000111345799999999999999999999999999876666
Q ss_pred cccccCCCeeEeccCccccchhHHHHHHhhhhcCC----CeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhh
Q 009060 423 KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKD----KRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTI 498 (545)
Q Consensus 423 ~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~----r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~~g~ 498 (545)
++..+++.+++.+.++|+||+++|+|+|++++.|+ ++||+++|||+|+|+++||+|++++++|+++||+||++|++
T Consensus 397 ~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~~~el~ta~~~~l~~~ivv~nN~~~~~ 476 (563)
T 2vk8_A 397 QTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTI 476 (563)
T ss_dssp GSCCCSSCEEECCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEESSSCHH
T ss_pred hcCcCCCCeEEcccchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhccHHHHHHHHHcCCCcEEEEEECCcchh
Confidence 66777777899999999999999999999999987 99999999999999999999999999999999999999999
Q ss_pred hhhhcC--CCCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 499 EVEIHD--GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 499 ~~~~~~--~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
.+.+++ ..+.+++++||.++|++||+++ +.+++|++.+|+
T Consensus 477 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~--~~~~~v~~~~el 518 (563)
T 2vk8_A 477 QKLIHGPKAQYNEIQGWDHLSLLPTFGAKD--YETHRVATTGEW 518 (563)
T ss_dssp HHHHSCTTCGGGCCCCCCGGGHHHHTTCSS--EEEEEECBHHHH
T ss_pred hhhhhCCCCCcccCCCCCHHHHHHHhCCCC--CcEEEecCHHHH
Confidence 544332 2355677899999999999973 246788887765
No 4
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=100.00 E-value=7.5e-89 Score=743.93 Aligned_cols=502 Identities=31% Similarity=0.478 Sum_probs=425.7
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcchHHHHH
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLN 106 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~~ 106 (545)
++++|+|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||+|+||++||++|+|||++|+++
T Consensus 25 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~GyAr~tG~~v~~~tsGpG~~N~~~ 104 (570)
T 2vbf_A 25 YTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYARTKKAAAFLTTFGVGELSAIN 104 (570)
T ss_dssp CBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHSCEEEEEETTHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhcCCCCeEECcCcHHHHHHHHHHHHHHhCCeEEEEcCCCCHHHHHH
Confidence 79999999999999999999999999999999998767899999999999999999999999999999999999999999
Q ss_pred HHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcE
Q 009060 107 AIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPV 186 (545)
Q Consensus 107 ~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV 186 (545)
||++||.+++|||+|||+++....+++..+||..++.++.+|.++++++|||+.++++ +++++.+++|++.|.+++|||
T Consensus 105 gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~-~~~~~~l~~A~~~A~~~~GPV 183 (570)
T 2vbf_A 105 GLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTA-ENATYEIDRVLSQLLKERKPV 183 (570)
T ss_dssp HHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHHCCCE
T ss_pred HHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEECc-ccHHHHHHHHHHHHhhCCCCE
Confidence 9999999999999999999998777666677777655676799999999999999999 999999999999999888999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCce
Q 009060 187 YISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (545)
Q Consensus 187 ~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv 266 (545)
||+||.|++.. +.... ..+.........+.. .+.+++++++|.++|||+|++|.|+.++++.+++++|+|++++||
T Consensus 184 ~l~iP~d~~~~--~~~~~-~~~~~~~~~~~~~~~-~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv 259 (570)
T 2vbf_A 184 YINLPVDVAAA--KAEKP-ALSLEKESSTTNTTE-QVILSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFVSETKLPI 259 (570)
T ss_dssp EEEEEHHHHTS--BCCCC-SSCCC------CHHH-HHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCCCE
T ss_pred EEEcchhhhcC--cccCC-cccccccCCCCCccH-HHHHHHHHHHHHcCCCCEEEECcCccccChHHHHHHHHHHHCCCE
Confidence 99999998753 22111 111100010111112 567899999999999999999999998899999999999999999
Q ss_pred EeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecCCCcc
Q 009060 267 AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSL 346 (545)
Q Consensus 267 ~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~ 346 (545)
++|+++||.||++||+++|.|.|..+++.++++++++|+||++|+++.+..+..|..+.++.++||||.|+.+++ +..+
T Consensus 260 ~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~ 338 (570)
T 2vbf_A 260 TTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGVKLTDSSTGAFTHHLDENKMISLNIDEGIIF-NKVV 338 (570)
T ss_dssp EECSTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHHCSEEEEESCCCCGGGTTTTCCCCCGGGEEEECSSCEEET-TEEE
T ss_pred EECcccCccCCCCCcCccCCcCCCcCCHHHHHHHHhCCEEEEECCCcccccccccccCCCCCeEEEEeCCHHHhC-Ceee
Confidence 999999999999999999998788889999999999999999999998888777765556779999999999997 5566
Q ss_pred ccccHHHHHHHHHHHhccCchhhhhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccccccccc
Q 009060 347 GWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRL 426 (545)
Q Consensus 347 ~~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~ 426 (545)
.+++++.+|++|.+.+.... |. |... ... ......+.++++..+++.|++.+|++++++.|+|++.++..++..
T Consensus 339 ~~~~~~~~l~~L~~~l~~~~--~~-~~~~--~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~ 412 (570)
T 2vbf_A 339 EDFDFRAVVSSLSELKGIEY--EG-QYID--KQY-EEFIPSSAPLSQDRLWQAVESLTQSNETIVAEQGTSFFGASTIFL 412 (570)
T ss_dssp CSSCHHHHHHTGGGCCSCCC--CS-CCCC--CCC-CCCCCCSSBCCHHHHHHHHHHHCCSSEEEEECTTHHHHHHTTSCC
T ss_pred cCCCHHHHHHHHHHhccccc--cc-cchh--hhc-cccCCCCCCcCHHHHHHHHHHhcCCCCEEEEeCCHHHHHHHhccc
Confidence 67789999999987665422 21 2111 000 011123457999999999999999999999999998765555666
Q ss_pred cCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc--C
Q 009060 427 PENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH--D 504 (545)
Q Consensus 427 ~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~--~ 504 (545)
+++.+++.+.++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++||+||++|++.+.++ +
T Consensus 413 ~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~ 492 (570)
T 2vbf_A 413 KSNSRFIGQPLWGSIGYTFPAALGSQIADKESRHLLFIGDGSLQLTVQELGLSIREKLNPICFIINNDGYTVEREIHGPT 492 (570)
T ss_dssp CTTCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTT
T ss_pred CCCCeEecCccchhhhhhHHHHHHHHHhCCCCcEEEEEcchhhhcCHHHHHHHHHcCCCCEEEEEECCchHHHHHHhccC
Confidence 77778999999999999999999999999999999999999999999999999999999999999999999955443 2
Q ss_pred CCCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 505 GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 505 ~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
..|.+++++||.++|++||+++..+.+++|++.+|+
T Consensus 493 ~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~~~~el 528 (570)
T 2vbf_A 493 QSYNDIPMWNYSKLPETFGATEDRVVSKIVRTENEF 528 (570)
T ss_dssp CGGGCCCCCCGGGHHHHTTCCTTTEEEEEECBHHHH
T ss_pred CCccCCCCCCHHHHHHHcCCCcCCcceEEecCHHHH
Confidence 245567889999999999997322346788887776
No 5
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=100.00 E-value=6.5e-89 Score=740.82 Aligned_cols=491 Identities=17% Similarity=0.211 Sum_probs=406.8
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHH
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (545)
|++|++|+|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||+|+|| ++||++|+|||++|
T Consensus 1 m~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N 80 (549)
T 3eya_A 1 MKQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLH 80 (549)
T ss_dssp CCCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHT
T ss_pred CCccHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhcCCCeEEEeCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhh
Confidence 57899999999999999999999999999999999987678999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCC
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKES 183 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~ 183 (545)
+++||++||.+++|||+|||+++....+++ .+| ..||.++|+++|||+.++.+++++++.+++||+.|.+++
T Consensus 81 ~~~gi~~A~~~~vPvl~itg~~~~~~~~~~-----~~Q---~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~ 152 (549)
T 3eya_A 81 LINGLFDCHRNHVPVLAIAAHIPSSEIGSG-----YFQ---ETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNR 152 (549)
T ss_dssp THHHHHHHHHTTCCEEEEEEESCGGGTTSC-----CTT---CCCHHHHTSTTCSEEEECCSGGGHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhhCCCEEEEeCCCchhhcCCC-----CCC---ccCHHHHHhhhhheEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999877765 233 357899999999999999999999999999999999989
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhC
Q 009060 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (545)
Q Consensus 184 GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~ 263 (545)
|||||+||.|++..+.+. ...... .....+...++++.+++++++|.+||||+|++|.|+. ++.+++++|+|+++
T Consensus 153 GPV~l~iP~dv~~~~~~~--~~~~~~-~~~~~~~~~~~~~~i~~~~~~l~~A~rpvIl~G~g~~--~a~~~l~~lae~~~ 227 (549)
T 3eya_A 153 GVSVVVLPGDVALKPAPE--GATMHW-YHAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGCA--GAHKELVEFAGKIK 227 (549)
T ss_dssp SEEEEEEEHHHHTSBCCT--TCCCCC-CCCCCCEEECCHHHHHHHHHHHHTCCSEEEEECGGGT--TCHHHHHHHHHHHT
T ss_pred CCEEEEeChhHhhcccCc--cccccc-cccCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCch--HHHHHHHHHHHHhC
Confidence 999999999998743221 111110 0111111123567899999999999999999999984 68899999999999
Q ss_pred CceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecCC
Q 009060 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (545)
Q Consensus 264 ~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 343 (545)
+||++|++|||.||++||+++|++ |..++..+++++++||+||.+|+++++.. .+.++.++||||.|+.+++ +
T Consensus 228 ~Pv~~t~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~~~~aDlvl~iG~~~~~~~-----~~~~~~~~i~id~d~~~~~-~ 300 (549)
T 3eya_A 228 APIVHALRGKEHVEYDNPYDVGMT-GLIGFSSGFHTMMNADTLVLLGTQFPYRA-----FYPTDAKIIQIDINPASIG-A 300 (549)
T ss_dssp CCEEECGGGHHHHSSSCTTBCCCC-STTSCHHHHHHHHHCSEEEEESCCCCCGG-----GSCSSSEEEEEESCGGGTT-S
T ss_pred CCEEECCccCcCCCCCCcccccCC-CCCCCHHHHHHHHhCCEEEEECCCCCccc-----cCCCCCeEEEEeCCHHHhC-C
Confidence 999999999999999999999986 88888889999999999999999986331 1235678999999999987 3
Q ss_pred Cccc----cccHHHHHHHHHHHhccCch-hh-hhhhhhc---CCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecC
Q 009060 344 PSLG----WVFMADFLSALAKKLRKNTT-AL-ENYRRIY---VPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAET 414 (545)
Q Consensus 344 ~~~~----~~d~~~~l~~L~~~l~~~~~-~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~ 414 (545)
.... ..|++.+|++|.+.+..+.. .| ..|++.+ ...........+.++++..+++.|++.++++++++.|+
T Consensus 301 ~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~ 380 (549)
T 3eya_A 301 HSKVDMALVGDIKSTLRALLPLVEEKADRKFLDKALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDV 380 (549)
T ss_dssp SSCCSEEEECCHHHHHHHHGGGSCCCCCCHHHHHHHHHHHHHHHHHHHTSCCCSSCBCHHHHHHHHHHHSCTTCEEEECT
T ss_pred CCCCCeEEEeCHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHhhCCCCCEEEEcC
Confidence 3322 24899999999988764321 12 2221110 00000000112357999999999999999999999999
Q ss_pred Ccccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeC
Q 009060 415 GDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINN 493 (545)
Q Consensus 415 G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN 493 (545)
|++.+|. .++..+.+++++.+.++|+||+++|+|+|++++.|+++||+++|||+|+|+++||+|++++++|+++||+||
T Consensus 381 G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~ivv~nN 460 (549)
T 3eya_A 381 GTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNN 460 (549)
T ss_dssp THHHHHHHHHCCCCSSCEEECCTTTCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGHHHHHHTTCCCEEEEEEC
T ss_pred cHHHHHHHHhCccCCCCcEEeCCCCchhhhHHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeC
Confidence 9998875 355666777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cchhh-hhhhc----CCCCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 494 GGYTI-EVEIH----DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 494 ~~~g~-~~~~~----~~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
++|++ ...+. ...+++++++||.++|++||++ +++|++.+|+
T Consensus 461 ~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~~l 507 (549)
T 3eya_A 461 SVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGIT-----GIRVEKASEV 507 (549)
T ss_dssp SBCCCC------------CCBCCCCCHHHHHHHTTSE-----EEEECSGGGH
T ss_pred CccHHHHHHHHhcCCCCcCCcCCCCCHHHHHHHcCCc-----EEEeCCHHHH
Confidence 99998 22111 1235567889999999999995 6788888876
No 6
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=100.00 E-value=7.7e-89 Score=741.81 Aligned_cols=504 Identities=32% Similarity=0.490 Sum_probs=425.0
Q ss_pred CccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcchHHHH
Q 009060 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVL 105 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~ 105 (545)
.|+++++|++.|+++||++|||+||+++++|++++.++++|++|.++||++|+|||+||+|+||++||++|+|||++|++
T Consensus 4 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~N~~ 83 (552)
T 1ovm_A 4 PYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFAALLTTFGVGELSAM 83 (552)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHSCEEEEEETTHHHHHTH
T ss_pred ccCHHHHHHHHHHHcCCCEEEECCChhHHHHHHHHhcCCCceEEeeCcHHHHHHHHHHHHHhhCCcEEEEccCCcHHHHH
Confidence 58999999999999999999999999999999999877789999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCc
Q 009060 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKP 185 (545)
Q Consensus 106 ~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GP 185 (545)
+||++||.+++|||+||||++....+++..+||.++..++.+|.++++++|||+.++++ +++++.+++|++.|.+++||
T Consensus 84 ~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~~~~~~~~tk~~~~v~~-~~~~~~i~~A~~~a~~~~GP 162 (552)
T 1ovm_A 84 NGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTE-QNACYEIDRVLTTMLRERRP 162 (552)
T ss_dssp HHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHHHHHHHHHhheeEEEEEcc-ccHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999998777777778777654555789999999999999999 99999999999999987899
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCc
Q 009060 186 VYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (545)
Q Consensus 186 V~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~P 265 (545)
|||+||.|++.. +.... +.+............+.+.+++++++|.++|||+|++|+|+.++++.+++++|+|++++|
T Consensus 163 V~l~iP~d~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~P 239 (552)
T 1ovm_A 163 GYLMLPADVAKK--AATPP-VNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMA 239 (552)
T ss_dssp EEEEEEHHHHHS--BCCCC-SSCCCCCCCCCCHHHHHHHHHHHHHHHHTCSCEEEEECHHHHHTTCHHHHHHHHHHSCCE
T ss_pred EEEEeehhhccC--ccCCC-cccccccCCCCCccchHHHHHHHHHHHHhCCCCEEEECcCccccCHHHHHHHHHHHHCCC
Confidence 999999998652 21111 111111111111233556799999999999999999999999889999999999999999
Q ss_pred eEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecCCCc
Q 009060 266 IAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPS 345 (545)
Q Consensus 266 v~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~ 345 (545)
|++|++|||.||++||+++|.+.|..+++.++++++++|+||++|++++++.+..|..+.++.++||||.|+.+++ +..
T Consensus 240 v~~t~~~~g~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~ 318 (552)
T 1ovm_A 240 HATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVG-DVW 318 (552)
T ss_dssp EEECGGGTTSSCTTSTTCCCCCCGGGSCHHHHHHHHTSSEEEEESCCCCTTTTTTTCCCCCTTTEEEECSSEEEET-TEE
T ss_pred EEEccccCccCCCCCcCeecccCCCCCCHHHHHHHHhCCEEEEECCCCCcccccccccCCCCCeEEEEeCChheeC-Ccc
Confidence 9999999999999999999987788888999999999999999999999888877766556779999999999997 555
Q ss_pred cccccHHHHHHHHHHHhccCchhhh-hhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccccccc
Q 009060 346 LGWVFMADFLSALAKKLRKNTTALE-NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKL 424 (545)
Q Consensus 346 ~~~~d~~~~l~~L~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~ 424 (545)
+.+++++.+|++|.+ +......|. .|++.. .. .......++++..+++.|++.+|++++++.|+|++.+..+++
T Consensus 319 ~~~~~~~~~l~~L~~-l~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~ 393 (552)
T 1ovm_A 319 FTGIPMNQAIETLVE-LCKQHVHAGLMSSSSG-AI---PFPQPDGSLTQENFWRTLQTFIRPGDIILADQGTSAFGAIDL 393 (552)
T ss_dssp EESCCHHHHHHHHHH-HHHTSCCC------------------CCSBCCHHHHHHHHHHHCCTTCEEEECTTHHHHHHTTC
T ss_pred cCCccHHHHHHHHHh-Ccccccchhhhhhhcc-cc---ccCCCCCccCHHHHHHHHHHhcCCCCEEEECCchHHHHHHhc
Confidence 567788999999988 643222222 222110 00 011134569999999999999999999999999987655666
Q ss_pred cccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcC
Q 009060 425 RLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHD 504 (545)
Q Consensus 425 ~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~~ 504 (545)
..+++.+++.+.++|+||+++|+|+|++++.|+++||+++|||+|+|+++||+|++++++|+++||+||++|++.+.+++
T Consensus 394 ~~~~~~~~~~~~~~g~mG~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~ 473 (552)
T 1ovm_A 394 RLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHG 473 (552)
T ss_dssp CCCSSCEEECCTTTCCTTHHHHHHHHHHHHCTTSCEEEEEEHHHHHHHTTHHHHHHHTTCCCEEEEEESSSCHHHHHHSC
T ss_pred ccCCCCeEEechhhHhhhhHHHHHHHHHHhCCCCcEEEEECchHHHhHHHHHHHHHHhCCCCEEEEEECCCCeEEEeecc
Confidence 66777789999999999999999999999999999999999999999999999999999999999999999999544432
Q ss_pred --CCCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 505 --GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 505 --~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
..|.+++++||.++|++||+++ ...+++|++.+|+
T Consensus 474 ~~~~~~~~~~~d~~~~a~a~G~~~-~~~~~~v~~~~~l 510 (552)
T 1ovm_A 474 AEQRYNDIALWNWTHIPQALSLDP-QSECWRVSEAEQL 510 (552)
T ss_dssp TTCGGGCCCCCCGGGSTTTSCSSC-CEEEEEECBHHHH
T ss_pred CCCCcccCCCCCHHHHHHHhCCCc-CCCEEEeCCHHHH
Confidence 2355678899999999999943 2246788887775
No 7
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=100.00 E-value=1.3e-88 Score=740.51 Aligned_cols=514 Identities=25% Similarity=0.386 Sum_probs=414.8
Q ss_pred CCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhh
Q 009060 7 MGSTGQPGSAPAPVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYAR 86 (545)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar 86 (545)
|||+-.----.+...+.+..|+++++|++.|+++||++|||+||+++++|+++|.+++.+++|.++||++|+|||+||+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~~~i~~~~E~~Aa~~A~GyAr 80 (565)
T 2nxw_A 1 MGSSHHHHHHSSGLVPRGSHMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLSHEPAVGFAADAAAR 80 (565)
T ss_dssp -------------CCCCSCCCBHHHHHHHHHHHTTCCCEEECCCGGGHHHHHHHHHHCSSCEEECSSHHHHHHHHHHHHH
T ss_pred CCCcccccccccCCccCCCCcCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHHH
Confidence 45544433334556666777999999999999999999999999999999999986555789999999999999999999
Q ss_pred hcC-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCCh
Q 009060 87 SRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNL 165 (545)
Q Consensus 87 ~tg-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~ 165 (545)
+|| |+||++|+|||++|+++||++|+.+++|||+||||++....+++..+||..| +..+|.++|++++||+.+++++
T Consensus 81 ~tgkp~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q--~~d~q~~~~~~~~k~~~~v~~~ 158 (565)
T 2nxw_A 81 YSSTLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGR--TLDTQFQVFKEITVAQARLDDP 158 (565)
T ss_dssp HHTSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTCC--CCCC---------CHHHHHHTTSCSCEEECCCT
T ss_pred HhCCCeEEEECCCCCHHHHHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeecc--chhhHHHHHHhhheEEEEeCCH
Confidence 999 9999999999999999999999999999999999999998888766665443 2224999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhCCCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCcc
Q 009060 166 GDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPN 245 (545)
Q Consensus 166 ~~~~~~l~~A~~~a~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g 245 (545)
+++++.+++||+.|.+++|||||+||.|++.. +.....+.+ .. ...+...++.+++++++|.++|||+|++|.|
T Consensus 159 ~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~~~--~~~~~~~~~--~~--~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g 232 (565)
T 2nxw_A 159 AKAPAEIARVLGAARAQSRPVYLEIPRNMVNA--EVEPVGDDP--AW--PVDRDALAACADEVLAAMRSATSPVLMVCVE 232 (565)
T ss_dssp TTHHHHHHHHHHHHHHHTCCEEEEEEGGGTTC--BCCCCCCCC--CC--CCCHHHHHHHHHHHHHHHHHCSSEEEEECHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEECChhhhcC--cCCCccccC--CC--CCCchhhHHHHHHHHHHHHcCCCCEEEECCC
Confidence 99999999999999988899999999999763 221111111 11 1112234567899999999999999999999
Q ss_pred ccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCC
Q 009060 246 IRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLI 325 (545)
Q Consensus 246 ~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~ 325 (545)
+.++++.+++++|+|++|+||++|++|||.+|++||+++|.|.|..+++.++++++++|+||.+|+++.+..+..|....
T Consensus 233 ~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~ 312 (565)
T 2nxw_A 233 VRRYGLEAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGAILSDTNFAVSQRKI 312 (565)
T ss_dssp HHHTTCHHHHHHHHHHHCSCEEECGGGTTTTTTSSSCCSCBCCGGGSCHHHHHHHHTCSEEEEESCCBCSSTTSBCTTTS
T ss_pred cchhchHHHHHHHHHHhCCCEEECcccCccCCCCCCccccccCcccCCHHHHHHHHhCCEEEEECCCccccccccccccC
Confidence 99888999999999999999999999999999999999998778888999999999999999999999888776665434
Q ss_pred CCCcEEEEcCCcceecCCCccccccHHHHHHHHHHHhccCchhhhhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCC
Q 009060 326 KKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLS 405 (545)
Q Consensus 326 ~~~~~i~id~d~~~~~~~~~~~~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 405 (545)
+..++|+||.|+.+++ +....++.+..++++|.+.++.....|....+ + ...........++++..+++.|.+.+|
T Consensus 313 ~~~~~i~i~~d~~~~~-~~~~~~~~~~~~l~~L~~~l~~~~~~w~~~~~-~--~~~~~~~~~~~~l~~~~v~~~l~~~l~ 388 (565)
T 2nxw_A 313 DLRKTIHAFDRAVTLG-YHTYADIPLAGLVDALLERLPPSDRTTRGKEP-H--AYPTGLQADGEPIAPMDIARAVNDRVR 388 (565)
T ss_dssp CGGGEEEEETTEEEET-TEEEESCCHHHHHHHHHHTSCCCCCCCCCSCS-S--CCCCCCCCSSSBCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCceeeC-CcccCCccHHHHHHHHHHhccccchhhhhhhh-h--hccccccCCCCccCHHHHHHHHHHhcc
Confidence 4568999999999997 44555667889999998876543222211110 0 000000112357999999999999999
Q ss_pred C--CCEE-EecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHh
Q 009060 406 G--DTAV-IAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRC 482 (545)
Q Consensus 406 ~--~~iv-v~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~ 482 (545)
+ ++++ +.|+|++.++...+ .+.+++.++++|+||+++|+|+|++++.|+++||+++|||+|+|+++||+|++++
T Consensus 389 ~~~~~iv~~~d~G~~~~~~~~~---~~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~i~GDG~~~~~~~~l~ta~~~ 465 (565)
T 2nxw_A 389 AGQEPLLIAADMGDCLFTAMDM---IDAGLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVGDGAFQMTGWELGNCRRL 465 (565)
T ss_dssp TTCCCCEEEECSSHHHHHHTTS---CCSCEECCTTTCCTTCHHHHHHHHHHHTTTCCEEEEEEHHHHHHHGGGGGGHHHH
T ss_pred cccCCEEEEecchHHHHHHHhC---CCcEEEccCccccccccchHHHHHHHhCCCCcEEEEEechHHHhhHHHHHHHHHh
Confidence 9 9998 89999987555444 4456888899999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeCCchhhhhhhc-CCCCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 483 GQRSIIFLINNGGYTIEVEIH-DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 483 ~lpi~ivV~NN~~~g~~~~~~-~~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
++|+++||+||++|++.+..+ ...|.+++.+||.++|++||++ +++|++.+|+
T Consensus 466 ~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~el 519 (565)
T 2nxw_A 466 GIDPIVILFNNASWEMLRTFQPESAFNDLDDWRFADMAAGMGGD-----GVRVRTRAEL 519 (565)
T ss_dssp TCCCEEEEEECSBCHHHHHHCTTCGGGBCCCCCHHHHTGGGTSE-----EEEECBHHHH
T ss_pred CCCCEEEEEECCCCcEEeeecccCCCCcCCCCCHHHHHHHcCCC-----EEEeCCHHHH
Confidence 999999999999999943322 2345677889999999999985 6788887765
No 8
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=100.00 E-value=2.6e-87 Score=735.17 Aligned_cols=497 Identities=17% Similarity=0.225 Sum_probs=409.5
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-CCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcch
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGG 101 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~-~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~ 101 (545)
.++||++|+|++.|+++||++|||+||+++++|+++|.++ ++|++|.++||++|+|||+||||+|| ++||++|+|||+
T Consensus 8 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~~i~~i~~~hE~~Aa~aA~GyAr~tg~~gv~~~TsGpG~ 87 (603)
T 4feg_A 8 QTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGG 87 (603)
T ss_dssp -CEEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHTTTTSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHH
T ss_pred cCeeeHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEecChHHHHHHHHHHHHHhCCceEEEecCCchH
Confidence 5679999999999999999999999999999999999875 58999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhh
Q 009060 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK 181 (545)
Q Consensus 102 ~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~ 181 (545)
+|+++||++||.+++|||+|||++++...+++ .+| ..||.++|+++|||+.++.+++++++.+++||+.|.+
T Consensus 88 ~N~~~gia~A~~~~vPvl~itG~~~~~~~~~~-----~~Q---~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~ 159 (603)
T 4feg_A 88 THLMNGLYDAREDHVPVLALIGQFGTTGMNMD-----TFQ---EMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYA 159 (603)
T ss_dssp HTTHHHHHHHHHTTCCEEEEEEECCTTTTTSC-----CTT---CCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCcccccCCC-----ccc---cccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999877765 233 3478999999999999999999999999999999998
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHH
Q 009060 182 ESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (545)
Q Consensus 182 ~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~ 261 (545)
++|||||+||.|++..+.+.. ..+.+....+......++++.+++++++|.+||||+|++|.|+ .++.++|++|+|+
T Consensus 160 ~~GPV~l~iP~dv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~--~~a~~~l~~lae~ 236 (603)
T 4feg_A 160 HQGVAVVQIPVDLPWQQIPAE-DWYASANSYQTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGA--RKAGKELEQLSKT 236 (603)
T ss_dssp HTSEEEEEEETTGGGSEEETT-TCCCCGGGCCCCCCCBCCHHHHHHHHHHHHHCSSEEEEECGGG--TTCHHHHHHHHHH
T ss_pred CCCCEEEEeChhhhhccCCcc-cccccccccCCCCCCCCCHHHHHHHHHHHhcCCCeEEEECCCc--hhHHHHHHHHHHH
Confidence 899999999999987421111 0010110111111123456789999999999999999999998 4689999999999
Q ss_pred hCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceec
Q 009060 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (545)
Q Consensus 262 ~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 341 (545)
+++||++|++|||.||++||+++|.+ |..+++.+++++++||+||.+|+++++.. .+..+.++.++||||.|+.+++
T Consensus 237 ~~~PV~~t~~gkg~~~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~iG~~~~~~~--~~~~~~~~~~~i~id~d~~~~~ 313 (603)
T 4feg_A 237 LKIPLMSTYPAKGIVADRYPAYLGSA-NRVAQKPANEALAQADVVLFVGNNYPFAE--VSKAFKNTRYFLQIDIDPAKLG 313 (603)
T ss_dssp HTCCEEECGGGTTSSCTTCTTBCCCC-SSSSCHHHHHHHHHCSEEEEESCCCTTTT--TTTTTTTCSEEEEEESCGGGTT
T ss_pred HCCCEEEcCccccCCCCCChhhcccC-cccCcHHHHHHHHhCCEEEEECCCCCccc--ccccCCCCCeEEEEeCCHHHhC
Confidence 99999999999999999999999996 78889999999999999999999987421 1122445789999999999997
Q ss_pred CCCcccc----ccHHHHHHHHHHHhccCch-hh-hhhhh---hcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEe
Q 009060 342 NGPSLGW----VFMADFLSALAKKLRKNTT-AL-ENYRR---IYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIA 412 (545)
Q Consensus 342 ~~~~~~~----~d~~~~l~~L~~~l~~~~~-~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~ 412 (545)
++...+ .|++.+|++|.+.+..+.. .| ..|.+ .+.............++++.++++.|.+.++++++++.
T Consensus 314 -~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~ 392 (603)
T 4feg_A 314 -KRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRAVNKIAEPDAIYSI 392 (603)
T ss_dssp -SSSCCSEEEESCHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHCCTTCEEEE
T ss_pred -CccCCCEEEEeCHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhhhhhcCCCCCcCHHHHHHHHHHhCCCCCEEEE
Confidence 333332 4899999999998764321 12 11211 00000000011234579999999999999999999999
Q ss_pred cCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEE
Q 009060 413 ETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLI 491 (545)
Q Consensus 413 d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~ 491 (545)
|+|++..|. .++..+++.+++.+.++|+||+++|+|+|++++.|+++||+++|||+|+|+.+||+|++++++|+++||+
T Consensus 393 d~G~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~~l~~a~~~~lp~~~vv~ 472 (603)
T 4feg_A 393 DVGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVF 472 (603)
T ss_dssp CSSHHHHHHHHHCCCCTTCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEE
T ss_pred CCchHHHHHHHhceeCCCCceecCcccccccchhHHHhhHHHhCCCCcEEEEeccHHHhhhHHHHHHHHHHCcCeEEEEE
Confidence 999998664 4556667778999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCchhh-hhh---hcCC-CC-CCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 492 NNGGYTI-EVE---IHDG-PY-NVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 492 NN~~~g~-~~~---~~~~-~~-~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
||++|++ ... .... .+ +.++.+||.++|++||++ +++|++.+++
T Consensus 473 nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~~l 522 (603)
T 4feg_A 473 TNCQYGFIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHMQ-----AFRVNKIEQL 522 (603)
T ss_dssp ECSBCHHHHHHHHHHCSSCCCSSBCCCCCHHHHHHHTTCE-----EEEECBGGGH
T ss_pred ECCchHHHHHHHHHhcCCCcccCcCCCCCHHHHHHHCCCe-----EEEECCHHHH
Confidence 9999998 211 1122 22 356789999999999996 6788888775
No 9
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=100.00 E-value=4.9e-87 Score=737.88 Aligned_cols=500 Identities=19% Similarity=0.249 Sum_probs=409.4
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchH
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGL 102 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~ 102 (545)
+..|+++++|++.|+++||++|||+||+.+++|+++|.++++|++|.++||++|+|||+||||+|| ++||++|+|||++
T Consensus 79 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~pl~dal~~~~~i~~v~~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~ 158 (677)
T 1t9b_A 79 FVGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGAT 158 (677)
T ss_dssp TTTCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHTTTCSSSEEECCSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHH
T ss_pred ccCCCHHHHHHHHHHHcCCCEEEEecCccHHHHHHHHHhCCCCeEEEeCChHHHHHHHHHHHHHHCCCEEEEECCChHHH
Confidence 456899999999999999999999999999999999987778999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC
Q 009060 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (545)
Q Consensus 103 n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (545)
|+++||++||.+++|||+|||++++...+++ .+| ..||.++++++|||+.++.+++++++.+++||+.|.++
T Consensus 159 N~~~gia~A~~d~vPllvItG~~~~~~~g~~-----a~Q---~~Dq~~i~~~~tk~~~~v~~~~~i~~~i~~A~~~A~~g 230 (677)
T 1t9b_A 159 NVVTPMADAFADGIPMVVFTGQVPTSAIGTD-----AFQ---EADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSG 230 (677)
T ss_dssp TTHHHHHHHHHHTCCEEEEEEECCTTTTTSC-----CTT---CCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCChhhcCCC-----Ccc---ccCHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999987765 233 35799999999999999999999999999999999986
Q ss_pred -CCcEEEEeCCCCCCCCCCCCCCC--CCCccc--CCC-CCCchhhHHHHHHHHHHHHhcCCCEEEcCcccccc-chHHHH
Q 009060 183 -SKPVYISISCNLPGIPHPTFARD--PVPFFL--APK-VSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVA-KAQKAF 255 (545)
Q Consensus 183 -~GPV~l~iP~dv~~~~~~~~~~~--~~~~~~--~~~-~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~-~a~~~l 255 (545)
||||||+||.|++.......... ..+... .+. ......+++.+++++++|.+||||+|++|.|+.++ ++.++|
T Consensus 231 rpGPV~l~lP~Dv~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvIl~G~g~~~~~~~~~~l 310 (677)
T 1t9b_A 231 RPGPVLVDLPKDVTAAILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLL 310 (677)
T ss_dssp SCCEEEEEEEHHHHHSBCCSCBC--------------------CHHHHHHHHHHHHHTCSSEEEEECGGGGGSTTHHHHH
T ss_pred CCceEEEEcCHHHhhhhcccccccccccccccccCCCccccccCCHHHHHHHHHHHHhCCCeEEEECcccccCchhHHHH
Confidence 89999999999865311100000 001000 000 00011235679999999999999999999999766 467999
Q ss_pred HHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCc------
Q 009060 256 IELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEK------ 329 (545)
Q Consensus 256 ~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~------ 329 (545)
++|||++++||++|++|||.||++||+++|.+ |..++..+++++++||+||.||+++++..+..+..+.++.+
T Consensus 311 ~~lae~~~~PV~tt~~gkg~~~~~hpl~lG~~-G~~g~~~~~~~l~~aDlvl~iG~r~~~~~t~~~~~~~~~~~~~~~~~ 389 (677)
T 1t9b_A 311 KELSDRAQIPVTTTLQGLGSFDQEDPKSLDML-GMHGCATANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEG 389 (677)
T ss_dssp HHHHHHTTCCEEECGGGTTSSCTTSTTEEEEC-STTSCHHHHHHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTT
T ss_pred HHHHHHhCCCeeeccccCccCCCCCccccCcC-CccCcHHHHHHHhcCCEEEEECCccCcccccCccccCcccccccccC
Confidence 99999999999999999999999999999985 88888889999999999999999999887766665555556
Q ss_pred ---EEEEcCCcceecCCCccc----cccHHHHHHHHHHHhcc-C-chhh----hhhhhhcCCCCCCCcCCCCCCcCHHHH
Q 009060 330 ---AIIVQPHRVTVGNGPSLG----WVFMADFLSALAKKLRK-N-TTAL----ENYRRIYVPPGIPVKRAQNEPLRVNVL 396 (545)
Q Consensus 330 ---~i~id~d~~~~~~~~~~~----~~d~~~~l~~L~~~l~~-~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (545)
+||||+|+.+++ +.... ..|++.+|++|++.+.. . ...| ..|++...... .......++++..+
T Consensus 390 ~~~iI~idid~~~~~-~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~--~~~~~~~~l~~~~v 466 (677)
T 1t9b_A 390 RGGIIHFEVSPKNIN-KVVQTQIAVEGDATTNLGKMMSKIFPVKERSEWFAQINKWKKEYPYAY--MEETPGSKIKPQTV 466 (677)
T ss_dssp SCEEEEEESCGGGSS-SSSCCSEEEESCHHHHHHHHHTTSCCCCCCHHHHHHHHHHHHHSCCCC--CCCCTTCCBCHHHH
T ss_pred CceEEEEECCHHHhC-CcccCCEEEeCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhccccc--ccccCCCCcCHHHH
Confidence 999999999886 33222 24899999999988754 1 1122 22222221110 11122356999999
Q ss_pred HHHHHhhC---CCCCEEEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhccc
Q 009060 397 FKHIQDML---SGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT 472 (545)
Q Consensus 397 ~~~l~~~l---~~~~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~ 472 (545)
++.|.+.+ +++.++..|+|++..|. +++..+.+++++.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+
T Consensus 467 ~~~L~~~l~~~~~~~iv~~~vg~~~~~~~~~~~~~~p~~~~~sg~~G~mG~~lpaAiGaalA~p~~~Vv~i~GDGsf~~~ 546 (677)
T 1t9b_A 467 IKKLSKVANDTGRHVIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMT 546 (677)
T ss_dssp HHHHHHHHHTTCSCEEEEECSSHHHHHHHHHSCCCSTTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEEEEHHHHHHH
T ss_pred HHHHHHHhhcCCCCEEEEeCCchHHHHHHHhcccCCCCeEEeCCCcchhhchHHHHHHHHHhCCCCeEEEEEeehHHhcc
Confidence 99999998 67788888999887664 456666777799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCchhhhh----hhcCCCC--CCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 473 AQEISTMIRCGQRSIIFLINNGGYTIEV----EIHDGPY--NVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 473 ~~eL~ta~~~~lpi~ivV~NN~~~g~~~----~~~~~~~--~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
++||+|++++++|+++||+||++|++.+ ..+...+ ..+.++||.++|++||++ +++|++.+|+
T Consensus 547 ~~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~-----~~~v~~~~el 615 (677)
T 1t9b_A 547 LTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAMGLK-----GLRVKKQEEL 615 (677)
T ss_dssp GGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHTTCE-----EEEECSHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEeCCCchhhhhhhhhhcCCCcccCcCCCCCHHHHHHHcCCe-----EEEECCHHHH
Confidence 9999999999999999999999999822 2233333 245789999999999995 6788887776
No 10
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=100.00 E-value=3e-87 Score=733.79 Aligned_cols=493 Identities=18% Similarity=0.241 Sum_probs=407.9
Q ss_pred CccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHH
Q 009060 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (545)
.|+++|+|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||+|+|| ++||++|+|||++|+
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 90 (590)
T 1ybh_A 11 PRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNL 90 (590)
T ss_dssp CEEHHHHHHHHHHTTTCCEEEECCCGGGHHHHHHHHHCSSCEECCCSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTT
T ss_pred CccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhccCCccEEeeCCHHHHHHHHHHHHHHHCCCEEEEeccCchHHHH
Confidence 3799999999999999999999999999999999987678999999999999999999999999 999999999999999
Q ss_pred HHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-C
Q 009060 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (545)
Q Consensus 105 ~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (545)
++||++||.+++|||+|||+++....+++ .+| ..||.++++++|||+.++++++++++.+++||+.|.++ |
T Consensus 91 ~~gv~~A~~~~vPll~itg~~~~~~~g~~-----~~Q---~~d~~~~~~~~~k~~~~v~~~~~i~~~l~~A~~~a~~~~~ 162 (590)
T 1ybh_A 91 VSGLADALLDSVPLVAITGQVPRRMIGTD-----AFQ---ETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRP 162 (590)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCGGGTTTT-----CTT---CCCHHHHHGGGSSEEEECCCGGGHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHhhCCCEEEEeCcCCccccCCC-----ccc---ccCHHHHHHHHhCeEEecCCHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999877765 233 35789999999999999999999999999999999986 7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCcc-cCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHh
Q 009060 184 KPVYISISCNLPGIPHPTFARDPVPFF-LAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (545)
Q Consensus 184 GPV~l~iP~dv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~ 262 (545)
|||||+||.|++..+.+...+...... ..+. .....+++.+++++++|.+||||+|++|.|+.+++ +++++|+|++
T Consensus 163 GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~--~~l~~lae~~ 239 (590)
T 1ybh_A 163 GPVLVDVPKDIQQQLAIPNWEQAMRLPGYMSR-MPKPPEDSHLEQIVRLISESKKPVLYVGGGCLNSS--DELGRFVELT 239 (590)
T ss_dssp CEEEEEEEHHHHHCEECCCTTCCCCCHHHHHH-SCCCCCHHHHHHHHHHHHHCSSEEEEECGGGTTCH--HHHHHHHHHH
T ss_pred ceEEEEeCcchhhhhcccccccccccccCCCC-CCCCCCHHHHHHHHHHHHhCCCcEEEECcccccCH--HHHHHHHHHh
Confidence 999999999987532111101101100 0000 00012456799999999999999999999998765 9999999999
Q ss_pred CCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecC
Q 009060 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (545)
Q Consensus 263 ~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (545)
|+||++|++|||.||++||+++|.+ |..++..++++++++|+||.+|+++++..+..+..+.++.++||||.|+.+++
T Consensus 240 ~~Pv~~t~~g~g~~~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~- 317 (590)
T 1ybh_A 240 GIPVASTLMGLGSYPADDELSLHML-GMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIG- 317 (590)
T ss_dssp CCCEEECTTTTTSSCTTSTTEEEEC-STTSCHHHHHHHHHCSEEEEESCCCCHHHHSSGGGTTTTSEEEEEESCTTTTT-
T ss_pred CCCEEEchhhcCcCCCCCchhcCCc-ccccCHHHHHHHHhCCEEEEEcCCCCccccCcccccCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999995 88888889999999999999999998766665655667789999999999987
Q ss_pred CCcccc----ccHHHHHHHHHHHhccCc-------hhh-hh---hhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCC
Q 009060 343 GPSLGW----VFMADFLSALAKKLRKNT-------TAL-EN---YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGD 407 (545)
Q Consensus 343 ~~~~~~----~d~~~~l~~L~~~l~~~~-------~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 407 (545)
+....+ .|++.+|++|.+.+.... ..| .. +++.. ... . .....++++..+++.|.+.+|++
T Consensus 318 ~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~~~~l~~~~~~~~l~~~lp~~ 393 (590)
T 1ybh_A 318 KNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNVQKQKF-PLS--F-KTFGEAIPPQYAIKVLDELTDGK 393 (590)
T ss_dssp SSSCCSEEEESCHHHHHHHHHHHHHHTHHHHCCCCHHHHHHHHHHHHHS-CCC--C-CCCTTBCCHHHHHHHHHHHTTTC
T ss_pred CCcCCCeEEecCHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhh-hhh--c-ccccCCcCHHHHHHHHHHhCCCC
Confidence 333222 489999999988775321 112 11 11111 111 0 11234699999999999999999
Q ss_pred CEEEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCe
Q 009060 408 TAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRS 486 (545)
Q Consensus 408 ~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi 486 (545)
++++.|+|++..|. .++..+++.+|+.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+
T Consensus 394 ~ivv~d~G~~~~~~~~~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~ 473 (590)
T 1ybh_A 394 AIISTGVGQHQMWAAQFYNYKKPRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPV 473 (590)
T ss_dssp CEEEECSSHHHHHHHHSCCCSSTTSEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHTTTHHHHHHHTTCCE
T ss_pred CEEEEcCcHHHHHHHHhcccCCCCeEEeCCCcccccchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCc
Confidence 99999999987554 45666677779999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCchhhhh----hhcCCCC--CCC--------CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 487 IIFLINNGGYTIEV----EIHDGPY--NVI--------KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 487 ~ivV~NN~~~g~~~----~~~~~~~--~~l--------~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
++||+||++|++.. ..++..+ +.+ +++||.++|++||++ +++|++.+|+
T Consensus 474 ~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~el 536 (590)
T 1ybh_A 474 KVLLLNNQHLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIP-----AARVTKKADL 536 (590)
T ss_dssp EEEEEECSBCHHHHHHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCC-----EEEECBHHHH
T ss_pred EEEEEECCcchHHHHHHHHhcCCccccccccccccccCCCCCHHHHHHHcCCe-----EEEeCCHHHH
Confidence 99999999999922 2222222 223 268999999999996 5688887776
No 11
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=100.00 E-value=4.7e-87 Score=731.68 Aligned_cols=497 Identities=18% Similarity=0.214 Sum_probs=410.9
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-CCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcch
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGG 101 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~-~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~ 101 (545)
|..|+++++|++.|+++||++|||+||+++++|+++|.++ ++|++|.++||++|+|||+||+|+|| |+||++|+|||+
T Consensus 1 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~v~~~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~ 80 (589)
T 2pgn_A 1 MAIKRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYNYVKDRSAAVGAWHCVGN 80 (589)
T ss_dssp -CEEEHHHHHHHHHHHTTCCEEEEECSGGGHHHHHHHHTSTTSTTCBCCSSHHHHHHHHHHHHHHHTSCCEEEEEEGGGG
T ss_pred CCCCcHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHHCCCEEEEEecCchH
Confidence 4568999999999999999999999999999999999876 67999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhh
Q 009060 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK 181 (545)
Q Consensus 102 ~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~ 181 (545)
+|+++||++||.+++|||+||||++....+++. . +| ..||.. |+++|||+.++.+++++++.+++||+.|.+
T Consensus 81 ~N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~-~---~Q---~~d~~~-~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~ 152 (589)
T 2pgn_A 81 LLLHAAMQEARTGRIPAVHIGLNSDGRLAGRSE-A---AQ---QVPWQS-FTPIARSTQRVERLDKVGEAIHEAFRVAEG 152 (589)
T ss_dssp GGCHHHHHHHHHTTCCEEEEEEESCGGGTTCTT-C---SS---CCCGGG-GTTTSSEEEECCSGGGHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCcccccCCCC-c---cc---ccChhh-ccccEEEEeecCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998777641 1 22 346889 999999999999999999999999999998
Q ss_pred C-CCcEEEEeCCCCCCCCCCCCCCCCCCc-ccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHH
Q 009060 182 E-SKPVYISISCNLPGIPHPTFARDPVPF-FLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELA 259 (545)
Q Consensus 182 ~-~GPV~l~iP~dv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~la 259 (545)
+ ||||||+||.|++..+.+.....+.+. ...+... .++ +.+++++++|.+||||+|++|+|+.++++.+++++|+
T Consensus 153 ~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~la 229 (589)
T 2pgn_A 153 HPAGPAYVDIPFDLTADQIDDKALVPRGATRAKSVLH--APN-EDVREAAAQLVAAKNPVILAGGGVARSGGSEALLKLA 229 (589)
T ss_dssp SSCCEEEEEEETHHHHCEEECTTTSCCCCCCCCCCCC--CCH-HHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHH
T ss_pred CCCccEEEEeCHhhhhcccccccccccccccCCccCC--ChH-HHHHHHHHHHHhCCCeEEEECCCcccccHHHHHHHHH
Confidence 6 699999999998653111100001111 1111001 123 6789999999999999999999999888999999999
Q ss_pred HHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcce
Q 009060 260 DATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVT 339 (545)
Q Consensus 260 e~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ 339 (545)
|++++||++|++|||.||++||+++|. .|..+++.++++++++|+||.+|+++.++.+. |..+.++.++||||.|+.+
T Consensus 230 e~~~~Pv~~t~~~~g~~~~~~p~~~G~-~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~-~~~~~~~~~~i~id~d~~~ 307 (589)
T 2pgn_A 230 EMVGVPVVTTSTGAGVFPETHALAMGS-AGFCGWKSANDMMAAADFVLVLGSRLSDWGIA-QGYITKMPKFVHVDTDPAV 307 (589)
T ss_dssp HHHTCCEEECTTTTTSSCTTSTTEEEE-CSTTSCHHHHHHHHHCSEEEEESCCCCTTTTT-TTTTCCCCSEEEEESCGGG
T ss_pred HHhCCCEEEccccCccCCCCChhhcCC-ccccCCHHHHHHHhhCCEEEEECCCccccccc-ccccCCCCeEEEEeCCHHH
Confidence 999999999999999999999999998 48888888999999999999999999887776 7666567899999999999
Q ss_pred ecCCCcccc----ccHHHHHHHHHHHhcc----C------chhhh---hhhh-hcCCCCCCCcCCCCCCcCHHHHHHHHH
Q 009060 340 VGNGPSLGW----VFMADFLSALAKKLRK----N------TTALE---NYRR-IYVPPGIPVKRAQNEPLRVNVLFKHIQ 401 (545)
Q Consensus 340 ~~~~~~~~~----~d~~~~l~~L~~~l~~----~------~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ 401 (545)
++ +....+ .|++.+|++|.+.+.. . ...|. .+.+ .+.... ........++++..+++.|.
T Consensus 308 ~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~l~ 385 (589)
T 2pgn_A 308 LG-TFYFPLLSVVADAKTFMEQLIEVLPGTSGFKAVRYQERENFRQATEFRAAWDGWVR-EQESGDGMPASMFRAMAEVR 385 (589)
T ss_dssp TT-SSSCCSEEEECCHHHHHHHHHHHGGGSTTCCCCCGGGSTTHHHHHHHHHHHHHHHH-HHTCCCCSSCCHHHHHHHHH
T ss_pred HC-CCcCCCEEEEeCHHHHHHHHHHHhhhcccccccccccchhhccHHHHHHHHHHHHh-hhccCCCCCcCHHHHHHHHH
Confidence 87 333222 4899999999987752 1 11232 2222 110000 00101245699999999999
Q ss_pred hhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHH
Q 009060 402 DMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMI 480 (545)
Q Consensus 402 ~~l~~~~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~ 480 (545)
+.+|++++++.|+|++.+|. .++..+++.+++.+.++|+||+++|+|+|++++.|+++||+++|||+|+|+++||+|++
T Consensus 386 ~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~ 465 (589)
T 2pgn_A 386 KVQRPEDIIVTDIGNHTLPMFGGAILQRPRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGALYYHFNEFRVAV 465 (589)
T ss_dssp HTCCTTCEEEECSSTTHHHHHHHCCCSSTTCEESCTTTCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHH
T ss_pred HhCCCCCEEEEcCchHHHHHHHhcccCCCCcEECCCCcchhhhHHHHHHHHHHhCCCCcEEEEEeeHHHHhhHHHHHHHH
Confidence 99999999999999987654 45566677779999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeEEEEEeCCchhhhhh----hcCCCC-CCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 481 RCGQRSIIFLINNGGYTIEVE----IHDGPY-NVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 481 ~~~lpi~ivV~NN~~~g~~~~----~~~~~~-~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
++++|+++||+||++|++... .+...+ +.+.++||.++|++||++ +++|++.+|+
T Consensus 466 ~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~el 525 (589)
T 2pgn_A 466 EHKLPVITMVFTNESYGANWTLMNHQFGQNNWTEFMNPDWVGIAKAFGAY-----GESVRETGDI 525 (589)
T ss_dssp HTTCCCEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHHHHHHHHTCE-----EEECTTTCCH
T ss_pred HhCCCeEEEEEECCCcccchHHHHhhcCCCccccCCCCCHHHHHHHCCCe-----EEEECCHHHH
Confidence 999999999999999999322 223333 456689999999999995 6688888776
No 12
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=100.00 E-value=9.6e-87 Score=725.89 Aligned_cols=491 Identities=16% Similarity=0.195 Sum_probs=403.7
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHH
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (545)
||++++|++.|+++||++|||+||+++++|+++|.+ ++|++|.++||++|+|||+||+|+|| ++||++|+|||++|++
T Consensus 11 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~-~~i~~v~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~ 89 (566)
T 1ozh_A 11 AHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLD-SSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLI 89 (566)
T ss_dssp SCHHHHHHHHHHHHTCCEEEEECCTTTHHHHHHGGG-SSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTH
T ss_pred CcHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHHH
Confidence 799999999999999999999999999999999987 68999999999999999999999999 9999999999999999
Q ss_pred HHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-CC
Q 009060 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (545)
Q Consensus 106 ~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~G 184 (545)
+||++||.+++|||+||||++....+++ .+| ..||.++++++|||+.++.+++++++.+++||+.|.++ ||
T Consensus 90 ~~l~~A~~~~vPll~itg~~~~~~~~~~-----~~Q---~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~r~G 161 (566)
T 1ozh_A 90 TGMATANSEGDPVVALGGAVKRADKAKQ-----VHQ---SMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPG 161 (566)
T ss_dssp HHHHHHHHHTCCEEEEEEECCTTTC--------------CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHhcCCCEEEEeCCCccccCCCC-----ccc---ccCHHHHHHHHhheEEEcCCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999877765 222 35789999999999999999999999999999999986 79
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCC
Q 009060 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (545)
Q Consensus 185 PV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~ 264 (545)
||||+||.|++.. +.....+........ ..++++.+++++++|.+||||+|++|.|+.++++.+++++|+|++++
T Consensus 162 PV~l~iP~dv~~~--~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~ 236 (566)
T 1ozh_A 162 SAFVSLPQDVVDG--PVSGKVLPASGAPQM---GAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHI 236 (566)
T ss_dssp EEEEEEEHHHHHS--CEEECCCCCCCSCEE---CCSCHHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCC
T ss_pred eEEEEeChhhhhc--cccccccccccccCC---CCCCHHHHHHHHHHHHcCCCeEEEECCCcccccHHHHHHHHHHHHCC
Confidence 9999999998653 211111000000000 12245679999999999999999999999988999999999999999
Q ss_pred ceEeCCCCccCCCCCCC-CccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceecCC
Q 009060 265 PIAIMPSGKGLVPEHHP-HFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (545)
Q Consensus 265 Pv~tt~~~kg~~~~~hp-l~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 343 (545)
||++|+++||.+|++|| +++|.+ |..+++.++++++++|+||.+|+.+.......|. .++.++||||.|+.+++ +
T Consensus 237 Pv~~t~~~kg~~~~~~p~~~~G~~-g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~--~~~~~~i~id~d~~~~~-~ 312 (566)
T 1ozh_A 237 PVTSTYQAAGAVNQDNFSRFAGRV-GLFNNQAGDRLLQLADLVICIGYSPVEYEPAMWN--SGNATLVHIDVLPAYEE-R 312 (566)
T ss_dssp CEEECGGGTTTCCTTTCTTEEEEC-SSBTTCHHHHHHHHCSEEEEESCCGGGSCGGGTC--CSCSEEEEEESSCCCCB-T
T ss_pred CEEEccccCCcCCCCChHhhcCCC-cccCCHHHHHHHHhCCEEEEECCCCCcCCccccC--CCCCcEEEEeCCHHHhC-C
Confidence 99999999999999999 999997 8888888899999999999999965333333332 23679999999999997 3
Q ss_pred Cccc----cccHHHHHHHHHHHhccCc--hhh-hhh---hhhcCCCCCCCcCCCCCC-cCHHHHHHHHHhhCCCCCEEEe
Q 009060 344 PSLG----WVFMADFLSALAKKLRKNT--TAL-ENY---RRIYVPPGIPVKRAQNEP-LRVNVLFKHIQDMLSGDTAVIA 412 (545)
Q Consensus 344 ~~~~----~~d~~~~l~~L~~~l~~~~--~~~-~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~ivv~ 412 (545)
.... ..|++.+|++|.+.+.... ..| ..+ ++.............+.+ +++..+++.|.+.+|++++++.
T Consensus 313 ~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~l~~~~iv~~ 392 (566)
T 1ozh_A 313 NYTPDVELVGDIAGTLNKLAQNIDHRLVLSPQAAEILRDRQHQRELLDRRGAQLNQFALHPLRIVRAMQDIVNSDVTLTV 392 (566)
T ss_dssp TBCCSEEEESCHHHHHHHHHHTCCSCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCSSBCHHHHHHHHHHHCCTTEEEEE
T ss_pred CCCCCEEEEeCHHHHHHHHHHhccccCCcHHHHHHHHHHHHHhHhhhhhccccCCCCCcCHHHHHHHHHHhCCCCCEEEE
Confidence 3332 2489999999998775322 112 222 111000000000112345 9999999999999999999999
Q ss_pred cCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEE
Q 009060 413 ETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLI 491 (545)
Q Consensus 413 d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~ 491 (545)
|+|++..|. .++...++.+++.+.++|+||+++|+|+|++++.|+++||+++|||+|+|+++||+|++++++|+++||+
T Consensus 393 d~G~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~ivv~ 472 (566)
T 1ozh_A 393 DMGSFHIWIARYLYTFRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIW 472 (566)
T ss_dssp CSSHHHHHHHHTGGGCCCSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEEEEHHHHHHHTTHHHHHHHHTCCEEEEEE
T ss_pred cCcHHHHHHHHhcccCCCCeEEeCCCcccccchHHHHHHHHHhCCCCCEEEEEcChHHhccHHHHHHHHHhCCCcEEEEE
Confidence 999987654 4555666778999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCchhhhh----hhcCCCC-CCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 492 NNGGYTIEV----EIHDGPY-NVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 492 NN~~~g~~~----~~~~~~~-~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
||++|++.. ..++..| +++.++||.++|++||++ +++|++.+|+
T Consensus 473 nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~el 521 (566)
T 1ozh_A 473 VDNGYNMVAIQEEKKYQRLSGVEFGPMDFKAYAESFGAK-----GFAVESAEAL 521 (566)
T ss_dssp ECSBCHHHHHHHHHHHSSCCSCBCCCCCHHHHHHTTTSE-----EEECCSGGGH
T ss_pred ECCchhHHHHHHHHhcCCCccCcCCCCCHHHHHHHcCCe-----EEEeCCHHHH
Confidence 999999932 2234445 467789999999999995 6688888776
No 13
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=100.00 E-value=1.2e-86 Score=725.62 Aligned_cols=494 Identities=21% Similarity=0.256 Sum_probs=407.8
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchH
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGL 102 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~ 102 (545)
|..|+++|+|++.|+++||++|||+||+++++|+++|.++ +|++|.++||++|+|||+||+|+|| ++||++|+|||++
T Consensus 1 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~-~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~ 79 (563)
T 2uz1_A 1 MAMITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDH-DVPIIDTRHEAAAGHAAEGYARAGAKLGVALVTAGGGFT 79 (563)
T ss_dssp -CEEEHHHHHHHHHHHHTCCCEEECCCGGGHHHHHHHHHH-TCCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHH
T ss_pred CCccCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHHhc-CCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHH
Confidence 4568999999999999999999999999999999999865 5999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCCh-HHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhh
Q 009060 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF-TQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK 181 (545)
Q Consensus 103 n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~ 181 (545)
|+++||++||.+++|||+|||+++....+++. +| . .||.++|+++|||+.++++++++++.+++||+.|.+
T Consensus 80 N~~~~l~~A~~~~~Pll~itg~~~~~~~~~~~-----~Q---~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~ 151 (563)
T 2uz1_A 80 NAVTPIANAWLDRTPVLFLTGSGALRDDETNT-----LQ---AGIDQVAMAAPITKWAHRVMATEHIPRLVMQAIRAALS 151 (563)
T ss_dssp TTHHHHHHHHHHTCCEEEEEEECCGGGTTSCC-----TT---CCCCHHHHHGGGCSEEEECCCGGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcccCCchh-----hh---hhccHHHHhhhhhceEEEcCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999877652 33 3 578999999999999999999999999999999998
Q ss_pred C-CCcEEEEeCCCCCCCC-CCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHH
Q 009060 182 E-SKPVYISISCNLPGIP-HPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELA 259 (545)
Q Consensus 182 ~-~GPV~l~iP~dv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~la 259 (545)
+ ||||||+||.|+...+ .+.....+. ..... ....++.+.+++++++|.++|||+|++|.|+.++++.+++++|+
T Consensus 152 ~~~GPV~l~iP~dv~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~v~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~la 228 (563)
T 2uz1_A 152 APRGPVLLDLPWDILMNQIDEDSVIIPD-LVLSA--HGARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFV 228 (563)
T ss_dssp SSCCCEEEEEEHHHHHCEEEGGGSCCCC-CCCCS--SCCBCCHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHH
T ss_pred CCCceEEEEeCHHHhhhhcccccccccc-cccCC--CCCCCCHHHHHHHHHHHHcCCCcEEEECCccccccHHHHHHHHH
Confidence 6 6999999999953311 111000010 10100 01123466799999999999999999999999888999999999
Q ss_pred HHhCCceEeCCCCccCCCCC-CCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCC-CCcEEEEcCCc
Q 009060 260 DATGYPIAIMPSGKGLVPEH-HPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIK-KEKAIIVQPHR 337 (545)
Q Consensus 260 e~~~~Pv~tt~~~kg~~~~~-hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~-~~~~i~id~d~ 337 (545)
|++++||++|++|||.||++ ||+++|.+ | .+++.+++ ++++|+||.+|+++.++.+..|..+.+ +.++||||.|+
T Consensus 229 e~~~~Pv~~t~~~~g~~~~~~~p~~~G~~-g-~~~~~~~~-~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~ 305 (563)
T 2uz1_A 229 AATGVPVFADYEGLSMLSGLPDAMRGGLV-Q-NLYSFAKA-DAAPDLVLMLGARFGLNTGHGSGQLIPHSAQVIQVDPDA 305 (563)
T ss_dssp HHHCCCEEECGGGGGGGTTSCGGGEEEEG-G-GGGGTTTT-TCCCSEEEEESCCSSGGGTTTSCSSSCTTSEEEEECSCG
T ss_pred HHhCCcEEEcCcccCcCCCCCChhhcCCC-C-CCCHHHHh-hcCCCEEEEECCCCcccccccccccCCCCCeEEEEECCH
Confidence 99999999999999999999 99999997 5 67777777 899999999999999888766766655 78999999999
Q ss_pred ceecCCCccc----cccHHHHHHHHHHHhccC----c-hhh----hh-hhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhh
Q 009060 338 VTVGNGPSLG----WVFMADFLSALAKKLRKN----T-TAL----EN-YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDM 403 (545)
Q Consensus 338 ~~~~~~~~~~----~~d~~~~l~~L~~~l~~~----~-~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (545)
.+++ +.... ..|++.+|++|.+.+..+ . ..| .. +++..... ........ ++++..+++.|.+.
T Consensus 306 ~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~l~~~ 382 (563)
T 2uz1_A 306 CELG-RLQGIALGIVADVGGTIEALAQATAQDAAWPDRGDWCAKVTDLAQERYASI-AAKSSSEH-ALHPFHASQVIAKH 382 (563)
T ss_dssp GGTT-SSSCCSEEECSCHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH-HHHCCCSS-SCCHHHHHHHHHTT
T ss_pred HHhC-CCCCCCeEEEcCHHHHHHHHHHhhhhcccccCcHHHHHHHHHHHHHHhHhh-hhccccCC-CcCHHHHHHHHHHh
Confidence 9987 33322 248999999999887542 1 122 12 22111000 00000112 69999999999999
Q ss_pred CCCCCEEEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhc--CCCeEEEEEcchhhcccHHHHHHHH
Q 009060 404 LSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAA--KDKRVIACIGDGSFQVTAQEISTMI 480 (545)
Q Consensus 404 l~~~~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~--p~r~vv~i~GDGsf~~~~~eL~ta~ 480 (545)
+|++++++.|+|++..|. .++..+++.+++.+.++|+||+++|+|+|++++. |+++||+++|||+|+|+++||+|++
T Consensus 383 l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~~G~~l~~AiGaa~a~~~~~~~vv~i~GDG~~~~~~~~L~ta~ 462 (563)
T 2uz1_A 383 VDAGVTVVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLV 462 (563)
T ss_dssp CSTTEEEEECSSHHHHHHHHHHTTSCCSEEECCCTTCCTTTHHHHHHHHHHHHHHHTCEEEEEEEHHHHGGGTTHHHHHH
T ss_pred CCCCcEEEEcCchHHHHHHHhccccCCCeEECCCCCccccChHHHHHHHHHHhhCCCCeEEEEEccHHHhCCHHHHHHHH
Confidence 999999999999987654 4456667778999999999999999999999998 8999999999999999999999999
Q ss_pred HhCCCeEEEEEeCCchhhhhh----hcCC-C--CCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 481 RCGQRSIIFLINNGGYTIEVE----IHDG-P--YNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 481 ~~~lpi~ivV~NN~~~g~~~~----~~~~-~--~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
++++|+++||+||++|++... .++. . ++++.++||.++|++||++ +++|++.+|+
T Consensus 463 ~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~~l 524 (563)
T 2uz1_A 463 RKQLPLIVIIMNNQSWGATLHFQQLAVGPNRVTGTRLENGSYHGVAAAFGAD-----GYHVDSVESF 524 (563)
T ss_dssp HHTCCCEEEEEECSBCHHHHHHHHHHTCTTCCCSCBCCCCCHHHHHHHTTCE-----EEEECSHHHH
T ss_pred HhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCcCCCCCHHHHHHHcCCe-----EEEeCCHHHH
Confidence 999999999999999999322 2232 2 3456789999999999995 6688887765
No 14
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=100.00 E-value=1.8e-85 Score=711.24 Aligned_cols=487 Identities=18% Similarity=0.220 Sum_probs=405.7
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHH
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (545)
+|++++|++.|+++||++|||+||+++++|+++|. ++|++|.++||++|+|||+||+|+|| ++||++|+|||++|++
T Consensus 2 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~--~~i~~i~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~ 79 (528)
T 1q6z_A 2 ASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDFP--EDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAM 79 (528)
T ss_dssp CBHHHHHHHHHHHTTCCEEEECCCGGGHHHHTTCC--TTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTH
T ss_pred CcHHHHHHHHHHHCCCCEEEECCCcchHHHHHHHh--hcCcEEEECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHH
Confidence 68999999999999999999999999999999994 47999999999999999999999999 9999999999999999
Q ss_pred HHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-CC
Q 009060 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (545)
Q Consensus 106 ~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~G 184 (545)
+||++|+.+++|||+|||++++...+++. +|+ ..||.++|++++||+.++.+++++++.+++||+.|.++ +|
T Consensus 80 ~~l~~A~~~~~Pll~itg~~~~~~~~~~~-----~q~--~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~a~~~~~G 152 (528)
T 1q6z_A 80 GALSNAWNSHSPLIVTAGQQTRAMIGVEA-----LLT--NVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQG 152 (528)
T ss_dssp HHHHHHHHTTCCEEEEEEECCHHHHTTTC-----TTC--CTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHhhcCCCEEEEeCCCcccccCCCc-----ccc--cccHHHHHHHhhHhhhcCCCHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999998877763 322 14789999999999999999999999999999999985 79
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCC
Q 009060 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (545)
Q Consensus 185 PV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~ 264 (545)
||||+||.|++..+.+. ...+.+..... ....++++.+++++++|.++|||+|++|.|+.++++.+++++|+|++++
T Consensus 153 PV~l~iP~d~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~ 229 (528)
T 1q6z_A 153 PVYLSVPYDDWDKDADP-QSHHLFDRHVS--SSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKA 229 (528)
T ss_dssp CEEEEEEGGGTTSBCCG-GGGGGTTCCCC--CCCCCCHHHHHHHHHHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHHTC
T ss_pred cEEEEechhhhhCcccc-ccccccccCCC--CCCCCCHHHHHHHHHHHhcCCCeEEEECCccchhhHHHHHHHHHHHHCC
Confidence 99999999997632111 00000110000 0112245679999999999999999999999888899999999999999
Q ss_pred ce-EeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCC-CCCcEEEEcCCcceecC
Q 009060 265 PI-AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLI-KKEKAIIVQPHRVTVGN 342 (545)
Q Consensus 265 Pv-~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~~ 342 (545)
|| ++++++||.||++||+++|.+ | .+++.++++++++|+||.+|+++.++.+..|.... ++.++||||.|+.+++
T Consensus 230 Pv~~~~~~g~g~~~~~~p~~~G~~-g-~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~- 306 (528)
T 1q6z_A 230 PVWVAPSAPRCPFPTRHPCFRGLM-P-AGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAA- 306 (528)
T ss_dssp CEEECSSCSBCCSCTTSTTEEEEC-C-SCHHHHHHHHTTCSEEEEESSCTTCCCSCCCSCSSCTTCEEEEEESCHHHHH-
T ss_pred CEEEeccCccccCCCCCccccCcC-C-CCcHHHHHHHhcCCEEEEECCCCccccccCcCCcCCCCCeEEEEeCCHHHhC-
Confidence 99 778899999999999999997 5 77888899999999999999999888887775433 5779999999999886
Q ss_pred CCcccc----ccHHHHHHHHHHHhccCchhhhhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccc
Q 009060 343 GPSLGW----VFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSW 418 (545)
Q Consensus 343 ~~~~~~----~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~ 418 (545)
+. ..+ .|++.+|++|.+.+.....++..|++.. ........++++.++++.|.+.+|++++++.|+|++.
T Consensus 307 ~~-~~~~~i~~d~~~~l~~L~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~ 380 (528)
T 1q6z_A 307 RA-PMGDAIVADIGAMASALANLVEESSRQLPTAAPEP-----AKVDQDAGRLHPETVFDTLNDMAPENAIYLNESTSTT 380 (528)
T ss_dssp HC-SSSEEEESCHHHHHHHHHHHSCCCCSCCCCCCCCC-----CCCCCCSSSBCHHHHHHHHHHHSCTTCEEEEECTTSH
T ss_pred CC-CCCeeEeCCHHHHHHHHHHHhhccccchHHHHhhh-----hcccccCCCcCHHHHHHHHHhhCCCCeEEEECCcccH
Confidence 33 222 4899999999988754322111121110 0111234579999999999999999999999999998
Q ss_pred cccc-cccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchh
Q 009060 419 FNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYT 497 (545)
Q Consensus 419 ~~~~-~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~~g 497 (545)
+|.. ++...++.+++.+.+ |+||+++|+|+|++++.|+++||+++|||+|+|+.+||+|++++++|+++||+||++|+
T Consensus 381 ~~~~~~~~~~~~~~~~~~~g-g~~G~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~~l~~a~~~~l~~~ivv~nN~~~~ 459 (528)
T 1q6z_A 381 AQMWQRLNMRNPGSYYFCAA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYG 459 (528)
T ss_dssp HHHHHHCCCCSSSCEEECTT-CCTTSHHHHHHHHHHHCTTSCEEEEEEHHHHTTTGGGHHHHHHHTCCCEEEEEECSBCH
T ss_pred HHHHHhccccCCCcEECCCC-ccccchHHHHHHHHHhCCCCcEEEEECCcHHHhhHHHHHHHHHhCCCeEEEEEeCCcch
Confidence 7654 455555667888888 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh----hcCC--CCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 498 IEVE----IHDG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 498 ~~~~----~~~~--~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+.+. .+.. .+++++++||.++|++||++ +++|++.+|+
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~~l 503 (528)
T 1q6z_A 460 ALRWFAGVLEAENVPGLDVPGIDFRALAKGYGVQ-----ALKADNLEQL 503 (528)
T ss_dssp HHHHHHHHHTCCSCCSCBCCCCCHHHHHHHHTCE-----EEEESSHHHH
T ss_pred HhHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCe-----EEEeCCHHHH
Confidence 9322 1222 23456889999999999995 5688887765
No 15
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=100.00 E-value=2.3e-85 Score=722.27 Aligned_cols=496 Identities=16% Similarity=0.201 Sum_probs=404.8
Q ss_pred CccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhc-C-ceEEEEcCCcchHH
Q 009060 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSR-G-VGACVVTFTVGGLS 103 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~t-g-~gv~~~t~GpG~~n 103 (545)
.|+++|+|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||+|+| | ++||++|+|||++|
T Consensus 26 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N 105 (616)
T 2pan_A 26 KMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTD 105 (616)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHT
T ss_pred cCcHHHHHHHHHHHCCCCEEEECCCCccHHHHHHHHhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHH
Confidence 479999999999999999999999999999999998766899999999999999999999999 7 89999999999999
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (545)
+++||++|+.+++|||+||||++....+++ .+| ..||.++|+++|||+.++.+++++++.+++|++.|.++
T Consensus 106 ~~~~l~~A~~~~vPlvvItg~~p~~~~~~~-----~~Q---~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~r 177 (616)
T 2pan_A 106 MITALYSASADSIPILCITGQAPRARLHKE-----DFQ---AVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGR 177 (616)
T ss_dssp SHHHHHHHHHTTCCEEEEEEECCGGGTTTT-----CTT---CCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhcCCCEEEEecCCcccccCcc-----ccc---ccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999876654 222 35789999999999999999999999999999999985
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHh
Q 009060 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (545)
Q Consensus 183 ~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~ 262 (545)
||||||+||.|++..+.+.......+. +...+ ...++.+++++++|.++|||+|++|.|+.++++.+++++|+|++
T Consensus 178 ~GPV~l~iP~d~~~~~~~~~~~~~~~~--~~~~~--~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~ 253 (616)
T 2pan_A 178 PGPVLVDLPFDVQVAEIEFDPDMYEPL--PVYKP--AASRMQIEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELT 253 (616)
T ss_dssp CCCEEEEEEHHHHHSEEECCGGGCCCC--CCCCC--CCCHHHHHHHHHHHHTCSSEEEEECHHHHHTTCHHHHHHHHHHH
T ss_pred CceEEEEcchhhhhccccccccccccc--ccCCC--CCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHh
Confidence 799999999998653111100000010 00001 11356799999999999999999999998888999999999999
Q ss_pred CCceEeCCCCccCCCCCCCCccceecCCCCCH-HHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcceec
Q 009060 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSS-FCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (545)
Q Consensus 263 ~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~-~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 341 (545)
++||++|+++||.+|++||+++|.+ |..++. .++++++++|+||++|+++.++.+..+..+.++.++||||.|+.+++
T Consensus 254 ~~PV~~t~~~~g~~~~~hp~~~G~~-g~~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 332 (616)
T 2pan_A 254 SVPVIPTLMGWGCIPDDHELMAGMV-GLQTAHRYGNATLLASDMVFGIGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIG 332 (616)
T ss_dssp TCCEEECTTTTTSSCTTSTTBCCCC-SSSSCCHHHHHHHHHCSEEEEESCCCCHHHHSSHHHHHTTCEEEEEESCGGGTT
T ss_pred CCCEEEccccCccCCCCCccccCCc-cccCCHHHHHHHHHhCCEEEEECCCCcccccCcccccCCCCeEEEEeCCHHHhC
Confidence 9999999999999999999999986 566665 88899999999999999988665554544556778999999999987
Q ss_pred CCCccc----cccHHHHHHHHHHHhcc------C--chhhhhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhCCCCCE
Q 009060 342 NGPSLG----WVFMADFLSALAKKLRK------N--TTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTA 409 (545)
Q Consensus 342 ~~~~~~----~~d~~~~l~~L~~~l~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i 409 (545)
+.... ..|++.+|++|.+.+.. . ..+|....+.+.............++++..+++.|.+.+|++++
T Consensus 333 -~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~i 411 (616)
T 2pan_A 333 -RVLCPDLGIVSDAKAALTLLVEVAQEMQKAGRLPCRKEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVC 411 (616)
T ss_dssp -SSSCCSSCEECCHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTTSEECCCCCCSSBCHHHHHHHHHHHSCTTEE
T ss_pred -CCCCCCeEEEcCHHHHHHHHHHHhhhcccccccccHHHHHHHHHHHHhhhhhccccCCCCcCHHHHHHHHHHhCCCCcE
Confidence 33322 24899999999886542 1 11222211111010000011124569999999999999999999
Q ss_pred EEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEE
Q 009060 410 VIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSII 488 (545)
Q Consensus 410 vv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~i 488 (545)
++.|+|++..|. .++..+++++|+.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++
T Consensus 412 vv~d~G~~~~~~~~~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~i 491 (616)
T 2pan_A 412 YVTTIGLSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELAVGAQFNIPYIH 491 (616)
T ss_dssp EEECSSHHHHHHHHHCCCCSTTSEEECTTTCCTTCHHHHHHHHHHHCTTCEEEEEEEHHHHHHTGGGHHHHHHTTCCCEE
T ss_pred EEEcCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhCCHHHHHHHHHhCCCeEE
Confidence 999999987654 4566666677999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCchhhhhh----hcCC-----CCCC--C-----CCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 489 FLINNGGYTIEVE----IHDG-----PYNV--I-----KNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 489 vV~NN~~~g~~~~----~~~~-----~~~~--l-----~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
||+||++|++.+. .+.. .+.. + +.+||.++|++||++ +++|++.+|+
T Consensus 492 vv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~el 554 (616)
T 2pan_A 492 VLVNNAYLGLIRQSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCK-----AIRVFKPEDI 554 (616)
T ss_dssp EEEECSBCHHHHHHGGGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHTTCE-----EEEECSGGGH
T ss_pred EEEECCcchHHHHHHHHhcCCccccccccccccccCCCCCCCHHHHHHHcCCe-----EEEECCHHHH
Confidence 9999999998222 1222 2322 2 248999999999995 6688888776
No 16
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=100.00 E-value=1e-84 Score=712.77 Aligned_cols=488 Identities=17% Similarity=0.198 Sum_probs=405.1
Q ss_pred CccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-CCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHH
Q 009060 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~-~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (545)
+|+++|+|++.|+++||++|||+||+++++|+++|.++ ++|++|.++||++|+|||+||+|+|| ++||++|+|||++|
T Consensus 3 ~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N 82 (590)
T 1v5e_A 3 KINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASH 82 (590)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHT
T ss_pred CccHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEeeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHH
Confidence 47999999999999999999999999999999999876 68999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC-
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (545)
+++||++|+.+++|||+||||++....+++ .+| ..||.+++++++||+.++++++++++.+++||+.|.++
T Consensus 83 ~~~gl~~A~~~~vPll~Itg~~p~~~~g~~-----~~Q---~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~ 154 (590)
T 1v5e_A 83 LINGLYDAAMDNIPVVAILGSRPQRELNMD-----AFQ---ELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKR 154 (590)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCGGGTTTT-----CTT---CCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcccCCCC-----ccc---ccCHHHHHHhhccEEEEeCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999877765 233 25789999999999999999999999999999999996
Q ss_pred CCcEEEEeCCCCCCCCCCCCCC--C--CCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHH
Q 009060 183 SKPVYISISCNLPGIPHPTFAR--D--PVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIEL 258 (545)
Q Consensus 183 ~GPV~l~iP~dv~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~l 258 (545)
|||||| ||.|++..+.+.... . ..+. ..+ . .++.+.+++++++|.++|||+|++|+|+ + ++.+++++|
T Consensus 155 ~GPV~l-iP~dv~~~~~~~~~~~~~~~~~~~-~~~--~--~~~~~~i~~~~~~l~~a~rpvil~G~g~-~-~a~~~l~~l 226 (590)
T 1v5e_A 155 GVAVLE-VPGDFAKVEIDNDQWYSSANSLRK-YAP--I--APAAQDIDAAVELLNNSKRPVIYAGIGT-M-GHGPAVQEL 226 (590)
T ss_dssp SEEEEE-EETTGGGCEEEGGGCCCCGGGCCC-CCC--C--CCCHHHHHHHHHHHHHCSSEEEEECGGG-T-TCHHHHHHH
T ss_pred CceEEE-EccchhhcccCccccccccccccc-CCC--C--CCCHHHHHHHHHHHHhCCCeEEEEcCch-h-HHHHHHHHH
Confidence 599999 999997632110000 0 0110 011 1 1245679999999999999999999999 7 899999999
Q ss_pred HHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcc
Q 009060 259 ADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRV 338 (545)
Q Consensus 259 ae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~ 338 (545)
+|++++||++|++|||.||++||+++|+ .|..+++.++++++++|+||++|+++++....+- .+ ++.++||||.|+.
T Consensus 227 ae~~~~Pv~~t~~g~g~~~~~~p~~~G~-~g~~g~~~~~~~l~~aDlvl~iG~~~~~~~~~~~-~~-~~~~~i~id~d~~ 303 (590)
T 1v5e_A 227 ARKIKAPVITTGKNFETFEWDFEALTGS-TYRVGWKPANETILEADTVLFAGSNFPFSEVEGT-FR-NVDNFIQIDIDPA 303 (590)
T ss_dssp HHHHTCCEEECTTCGGGSCTTCTTEEEE-SSSSSCHHHHHHHHHCSEEEEESCCCTTTTTTTT-TT-TCSEEEEEESCGG
T ss_pred HHHHCCCEEEccccCcCCCCCChhhCcc-CcccCCHHHHHHHHhCCEEEEECCCCcchhcccc-CC-CCCeEEEEeCCHH
Confidence 9999999999999999999999999999 4888999999999999999999999977652110 12 5679999999999
Q ss_pred eecCCCcccc----ccHHHHHHHHHHHhccCc-hhh-h---hhhhhcCCCCCCCc--CCCCCCcCHHHHHHHHHhhCCCC
Q 009060 339 TVGNGPSLGW----VFMADFLSALAKKLRKNT-TAL-E---NYRRIYVPPGIPVK--RAQNEPLRVNVLFKHIQDMLSGD 407 (545)
Q Consensus 339 ~~~~~~~~~~----~d~~~~l~~L~~~l~~~~-~~~-~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~ 407 (545)
+++ +....+ .|++.+|++|.+.+.... ..| . .+++... . .... .....++++..+++.|.+.+|++
T Consensus 304 ~~~-~~~~~~~~i~gd~~~~l~~L~~~l~~~~~~~w~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 380 (590)
T 1v5e_A 304 MLG-KRHHADVAILGDAALAIDEILNKVDAVEESAWWTANLKNIANWR-E-YINMLETKEEGDLQFYQVYNAINNHADED 380 (590)
T ss_dssp GTT-SSSCCSEEEESCHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHH-H-HHHHHHTCCSSBCCHHHHHHHHHHHSCTT
T ss_pred HHC-CCcCCCeEEEcCHHHHHHHHHHhhccCCcHHHHHHHHHHHHHhH-h-hhhhcccCCCCCcCHHHHHHHHHhhCCCC
Confidence 997 333322 489999999998875422 122 1 1111110 0 0000 01234699999999999999999
Q ss_pred CEEEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCe
Q 009060 408 TAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRS 486 (545)
Q Consensus 408 ~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi 486 (545)
++++.|+|++.+|. .++..+++.+++.+.++|+||+++|+|+|+++++|+++||+++|||+|+|+++||+|++++++|+
T Consensus 381 ~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~ 460 (590)
T 1v5e_A 381 AIYSIDVGNSTQTSIRHLHMTPKNMWRTSPLFATMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVVTNVRYNMPV 460 (590)
T ss_dssp CEEEECSSHHHHGGGGTCCCCTTSEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCC
T ss_pred CEEEECCchHHHHHHHhcccCCCCeEEcCCCCCcccChHHHHHHHHHhCCCCeEEEEEechHHhchHHHHHHHHHhCCCC
Confidence 99999999998774 56667777889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCchhhhhhhcCCC-C----CCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 487 IIFLINNGGYTIEVEIHDGP-Y----NVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 487 ~ivV~NN~~~g~~~~~~~~~-~----~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
++||+||++|++.+..+... | +++.++||.++|++||++ +++|++.+|+
T Consensus 461 ~ivv~NN~~~~~~~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~el 514 (590)
T 1v5e_A 461 INVVFSNTEYAFIKNKYEDTNKNLFGVDFTDVDYAKIAEAQGAK-----GFTVSRIEDM 514 (590)
T ss_dssp EEEEEECSSCTTGGGTTSSSCCSCCCCCCCCCCHHHHHHHTTSE-----EEEECBHHHH
T ss_pred EEEEEECCchHHHHHHHHHhcCCCccccCCCCCHHHHHHHcCCE-----EEEECCHHHH
Confidence 99999999999943222111 2 235779999999999995 6788887765
No 17
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=100.00 E-value=1.9e-85 Score=717.04 Aligned_cols=495 Identities=19% Similarity=0.220 Sum_probs=406.3
Q ss_pred CccHHHHHHHHHHHcCCCEEEecCCCC-hHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHH
Q 009060 26 VGTLGRHLARRLVEIGAKDVFSVPGDF-NLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vFg~pG~~-~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (545)
.|+++++|++.|+++||++|||+||++ +++|+++|. + |++|.++||++|+|||+||+|+|| |+||++|+|||++|
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~~l~~al~--~-i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N 87 (573)
T 2iht_A 11 KPTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVE--G-IDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTN 87 (573)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCCGGGGTCCSCSST--T-CEEEECSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHH
T ss_pred CccHHHHHHHHHHHCCCCEEEEecCCcchhHHHHHHc--C-CeEEeeCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHH
Confidence 489999999999999999999999999 999999997 4 999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccCC-CcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhC
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYGT-NRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (545)
+++||++|+.+++|||+||||++....++ + .+| ..||.++|+++|||+.++++++++++.+++||+.|.++
T Consensus 88 ~~~~v~~A~~~~~Pll~itg~~~~~~~~~~~-----~~Q---~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~ 159 (573)
T 2iht_A 88 LSTGIATSVLDRSPVIALAAQSESHDIFPND-----THQ---CLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTE 159 (573)
T ss_dssp HHHHHHHHHHHTCCEEEEEEESCGGGCCTTT-----STT---CCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBS
T ss_pred HHHHHHHHHhhCCCEEEEcccCcccccCCcC-----ccc---cCCHHHHHHhHhhEEEEcCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998776 4 222 35799999999999999999999999999999999986
Q ss_pred -CCcEEEEeCCCCCCCCCC----CCCCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHH
Q 009060 183 -SKPVYISISCNLPGIPHP----TFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIE 257 (545)
Q Consensus 183 -~GPV~l~iP~dv~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~ 257 (545)
||||||+||.|++..+.. .......+. ..+......++.+.+++++++|.++|||+|++|.|+.++++.+++++
T Consensus 160 ~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~ 238 (573)
T 2iht_A 160 PVGPSFISLPVDLLGSSEGIDTTVPNPPANTP-AKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRA 238 (573)
T ss_dssp SCCCEEEEEEHHHHTCCTTCC---CCCCCCCC-SSCBEEECTTHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHH
T ss_pred CCceEEEEecchHhhhhhcccccCCccccccC-CCCccccCCCCHHHHHHHHHHHHcCCCeEEEECCCccccCHHHHHHH
Confidence 699999999999763210 110000110 01100000135678999999999999999999999988889999999
Q ss_pred HHHHhCCceEeCCCCccCCCCCCCCcccee----cCCCCCHHHHHHhhcCCEEEEeCCC-CCCCcccccccCCCCCcEEE
Q 009060 258 LADATGYPIAIMPSGKGLVPEHHPHFIGTY----WGAVSSSFCGEIVESADAYVFVGPI-FNDYSSVGYSLLIKKEKAII 332 (545)
Q Consensus 258 lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~----~G~~~~~~~~~~l~~aD~vl~lG~~-~~~~~~~~~~~~~~~~~~i~ 332 (545)
|+|++|+||++|+++||.||++||+++|.+ .|..+++.++++++++|+||.+|++ +.++.+..|.. .++.++||
T Consensus 239 lae~~~~Pv~~t~~~~g~~~~~hp~~~G~~~~~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~-~~~~~~i~ 317 (573)
T 2iht_A 239 LAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLRPSMWQK-GIEKKTVR 317 (573)
T ss_dssp HHHHHTCCEEECSTTTTSSCTTCTTEEEECCTTHHHHHTSCHHHHHHTTCCEEEEETCCGGGCCCHHHHCC-SSCCEEEE
T ss_pred HHHHHCCeEEEecccCccCCCCCcCccCccccccCCCCCCHHHHHHHhhCCEEEEECCCccccccccccCC-CCCCeEEE
Confidence 999999999999999999999999999985 3666777888999999999999999 87777666642 25678999
Q ss_pred EcCCcceecCCCccc----cccHHHHHHHHHHHhccCc-hhhh---hhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhC
Q 009060 333 VQPHRVTVGNGPSLG----WVFMADFLSALAKKLRKNT-TALE---NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDML 404 (545)
Q Consensus 333 id~d~~~~~~~~~~~----~~d~~~~l~~L~~~l~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 404 (545)
||.|+.+++ +.... ..|++.+|++|.+.+.... ..|. .+++..... .........++++..+++.|.+.+
T Consensus 318 id~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l 395 (573)
T 2iht_A 318 ISPTVNPIP-RVYRPDVDVVTDVLAFVEHFETATASFGAKQRHDIEPLRARIAEF-LADPETYEDGMRVHQVIDSMNTVM 395 (573)
T ss_dssp EESSCCSCT-TTCCCSEEEESCHHHHHHHHHHHTTTCCCCCCCCCHHHHHHHHHH-HTCCCCCSSSBCHHHHHHHHHHHH
T ss_pred EeCCHHHhC-CCcCCCeeEeCCHHHHHHHHHHhccccCchhHHHHHHHHHHhhhh-hhccccCcCCcCHHHHHHHHHHhc
Confidence 999999987 33322 2489999999998775321 1121 121111000 000111234699999999999999
Q ss_pred CC-----CCEEEecCCcccccc-ccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHH
Q 009060 405 SG-----DTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEIST 478 (545)
Q Consensus 405 ~~-----~~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~t 478 (545)
|+ +++++.|+|++.+|. .++..+++.+++.+.++|+||+++|+|+|++++.|+++||+++|||+|+|+++||+|
T Consensus 396 ~~~~~~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaa~a~~~~~vv~i~GDG~~~~~~~~L~~ 475 (573)
T 2iht_A 396 EEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGFHSNSSDLET 475 (573)
T ss_dssp HHHSCTTCCEEEECSSHHHHHHHHHCCCCSTTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGHHH
T ss_pred ccccCCCCcEEEEcCcHhHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEccHHHHhHHHHHHH
Confidence 99 999999999998664 345566677799999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeEEEEEeCCchhhhhh----hcCC-CC--CCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 479 MIRCGQRSIIFLINNGGYTIEVE----IHDG-PY--NVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 479 a~~~~lpi~ivV~NN~~~g~~~~----~~~~-~~--~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
++++++|+++||+||++|++... .+.. .. ..+.++||.++|++||++ +++|++.+|+
T Consensus 476 a~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~~l 539 (573)
T 2iht_A 476 IARLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGGVDFVALAEANGVD-----ATRATNREEL 539 (573)
T ss_dssp HHHHTCCCEEEEEECSBCHHHHHHHHHHHSSCCGGGTBCCCCCHHHHHHHTTCE-----EEECCSHHHH
T ss_pred HHHhCCCeEEEEEECCcchhhHHHHHHhcCCCcCccccCCCCCHHHHHHHcCCe-----EEEeCCHHHH
Confidence 99999999999999999999322 2222 22 456678999999999996 5678887765
No 18
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=100.00 E-value=2.6e-85 Score=719.92 Aligned_cols=495 Identities=14% Similarity=0.109 Sum_probs=396.7
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHH
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (545)
++++++|++.|+++||++|||+||+++++|+++|.++++|++|.+|||++|+|||+||+|+|| |+||++|+|||++|++
T Consensus 31 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N~~ 110 (604)
T 2x7j_A 31 THYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQRPVLLICTSGTAAANFY 110 (604)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECCCSTTHHHHHHHHHCTTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHTTH
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCcccHHHHHHHHhCCCceEEEecChHHHHHHHHHHHHhhCCCEEEEECChhHHHHHH
Confidence 689999999999999999999999999999999987678999999999999999999999999 9999999999999999
Q ss_pred HHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhh-------HHHHHHHHHHH
Q 009060 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGD-------AHELIDTAIST 178 (545)
Q Consensus 106 ~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~-------~~~~l~~A~~~ 178 (545)
+||++||.+++|||+||||+++...+++. .| ..||.++|+++|||+.+++++++ +++.+++||+.
T Consensus 111 ~gia~A~~~~vPlv~ItG~~~~~~~g~~~-----~Q---~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~ 182 (604)
T 2x7j_A 111 PAVVEAHYSRVPIIVLTADRPHELREVGA-----PQ---AINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGE 182 (604)
T ss_dssp HHHHHHHHHTCCEEEEEEECCGGGSSSCC-----TT---CCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEeCCCCHHHhCCCC-----CC---cCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999877752 33 35789999999999999999998 99999999999
Q ss_pred hhh-CCCcEEEEeCCCCCCCCCCCCCCCC----CCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHH
Q 009060 179 ALK-ESKPVYISISCNLPGIPHPTFARDP----VPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQK 253 (545)
Q Consensus 179 a~~-~~GPV~l~iP~dv~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~ 253 (545)
|.+ +||||||+||.|++..+.......+ .+..... +....++++.+++++++|.+||||+|++|+|+ ++++.+
T Consensus 183 A~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~-~~~a~~ 260 (604)
T 2x7j_A 183 AQKRPMGPVHVNVPLREPLMPDLSDEPFGRMRTGRHVSVK-TGTQSVDRESLSDVAEMLAEAEKGMIVCGELH-SDADKE 260 (604)
T ss_dssp HHSSSCCEEEEEEECCSCCCCCTTSCTTCCSSSSCSSEEE-CCEEECCTGGGHHHHHHHHHCSSEEEEECCCC-CHHHHH
T ss_pred hhCCCCCcEEEEcccCccCCCccccccccccccccccccc-ccCccCChhhHHHHHHHHhhcCCeEEEECCCC-cHHHHH
Confidence 998 5899999999998653211110000 0000000 00011234568999999999999999999998 567889
Q ss_pred HHHHHHHHhCCceEeCCCCccCC-CCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEE
Q 009060 254 AFIELADATGYPIAIMPSGKGLV-PEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAII 332 (545)
Q Consensus 254 ~l~~lae~~~~Pv~tt~~~kg~~-~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~ 332 (545)
++++|+|++++||++|+++++.+ |++||+++|.+.+..++...+++++ +|+||.||+++.+..+..|....++.++||
T Consensus 261 ~l~~lae~~~~PV~~t~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~-~Dlvl~iG~~~~~~~~~~~~~~~~~~~~i~ 339 (604)
T 2x7j_A 261 NIIALSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRKLR-PDVVIRFGPMPVSKPVFLWLKDDPTIQQIV 339 (604)
T ss_dssp HHHHHHHHHTCCEEECGGGTTTBSSSCCTTEECCHHHHTTSHHHHHHHC-CSEEEEESSCCSCHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHhcCceEEEcccccccccCCCCcceechHHHHhcCchhhhhcC-CCEEEEECCcCccHHHHHHHhhCCCCeEEE
Confidence 99999999999999999988765 8889999998765777777777776 899999999987665544543223568999
Q ss_pred EcCCcceecCCCccc----cccHHHHHHHHHHHhc-c-Cchhh-hhhhhhcC--CCCCCCcCCCCCCcCHHHHHHHHHhh
Q 009060 333 VQPHRVTVGNGPSLG----WVFMADFLSALAKKLR-K-NTTAL-ENYRRIYV--PPGIPVKRAQNEPLRVNVLFKHIQDM 403 (545)
Q Consensus 333 id~d~~~~~~~~~~~----~~d~~~~l~~L~~~l~-~-~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (545)
||.|+.+++ +.... ..|++.+|++|.+.+. . ....| ..|.+.+. .... .......++++.++++.|.+.
T Consensus 340 id~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~~ 417 (604)
T 2x7j_A 340 IDEDGGWRD-PTQASAHMIHCNASVFAEEIMAGLTAATRSSEWLEKWQFVNGRFREHL-QTISSEDVSFEGNLYRILQHL 417 (604)
T ss_dssp ECTTCCCCC-TTSCCSEEECSCHHHHHHHHHHTSCSSCCCCHHHHHHHHHHHHHHHHH-HTSCCCCTTSHHHHHHHHHHH
T ss_pred ECCCCCccC-CCccceEEEEcCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHH-HhhcccCCCCHHHHHHHHHHh
Confidence 999999887 33222 2489999999998874 2 11222 22211100 0000 001123479999999999999
Q ss_pred CCCCCEEEecCCccccccccc-cccC-CCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHH
Q 009060 404 LSGDTAVIAETGDSWFNCQKL-RLPE-NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIR 481 (545)
Q Consensus 404 l~~~~ivv~d~G~~~~~~~~~-~~~~-~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~ 481 (545)
+|++++++.|+|++.+|...+ .... +.+++.+.++++||+++|+|+|++++ ++++||+++|||+|+|+++||+|+++
T Consensus 418 lp~d~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~G~~~ig~~l~~AiGaala-~~~~vv~i~GDGsf~~~~~eL~ta~~ 496 (604)
T 2x7j_A 418 VPENSSLFVGNSMPIRDVDTFFEKQDRPFRIYSNRGANGIDGVVSSAMGVCEG-TKAPVTLVIGDLSFYHDLNGLLAAKK 496 (604)
T ss_dssp SCTTCEEEECTTHHHHHHHHHCCCBSCCCEEECCTTTCCSSSHHHHHHHHHHH-HTSCEEEEEEHHHHHHTGGGGHHHHH
T ss_pred CCCCCEEEEECCHHHHHHHHhcccCCCCceEEeCCCcCCcCcHHHHHHHHHhc-CCCcEEEEEccHHHHhHHHHHHHhhh
Confidence 999999999999987775443 3332 66799999999999999999999999 68999999999999999999999999
Q ss_pred hCCCeEEEEEeCCchhhhhhhc--------CCCCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 482 CGQRSIIFLINNGGYTIEVEIH--------DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 482 ~~lpi~ivV~NN~~~g~~~~~~--------~~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+++|+++||+||++|++..... +..+...+++||.++|++||++ +++|++.+|+
T Consensus 497 ~~lp~~ivv~NN~~~~i~~~~~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~el 558 (604)
T 2x7j_A 497 LGIPLTVILVNNDGGGIFSFLPQASEKTHFEDLFGTPTGLDFKHAAALYGGT-----YSCPASWDEF 558 (604)
T ss_dssp HCCCEEEEEEECSSCGGGGGSGGGSCHHHHHHHTTCCCCCCTHHHHHHTTCE-----EECCSSHHHH
T ss_pred cCCCeEEEEEeCCCCcccccCCCCccchhhHhhccCCCCCCHHHHHHHcCCe-----EEecCCHHHH
Confidence 9999999999999999832111 1112335679999999999995 5677777665
No 19
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=100.00 E-value=2.2e-84 Score=708.14 Aligned_cols=490 Identities=18% Similarity=0.221 Sum_probs=390.7
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHH
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (545)
..|+++++|++.|+++||++|||+||+++++|++++.+ ++|++|.++||++|+|||+||+|+|| |+||++|+|||++|
T Consensus 6 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~-~~i~~i~~~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N 84 (564)
T 2q28_A 6 QMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQA-EGIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLN 84 (564)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHH-TTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHH
T ss_pred ccCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHh-CCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCchHHH
Confidence 44799999999999999999999999999999999976 47999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccC--CCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhh
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYG--TNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK 181 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~ 181 (545)
+++||++||.+++|||+|||++++...+ ++ .+| ..||.++|+++|||+.++++++++++.+++||+.|.+
T Consensus 85 ~~~gi~~A~~~~vPll~itg~~~~~~~~~~~~-----~~Q---~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~ 156 (564)
T 2q28_A 85 GLTALANATVNGFPMIMISGSSDRAIVDLQQG-----DYE---ELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVS 156 (564)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCHHHHHTTSC-----CTT---CCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCccccCCCCC-----ccc---cccHHHHHHHhhheeeecCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988655 23 232 3579999999999999999999999999999999998
Q ss_pred -CCCcEEEEeCCCCCCCCCCCC--CCCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHH
Q 009060 182 -ESKPVYISISCNLPGIPHPTF--ARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIEL 258 (545)
Q Consensus 182 -~~GPV~l~iP~dv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~l 258 (545)
+||||||+||.|++..+.+.. .....+. ..+. ....++++.+++++++|.+||||+|++|.|+.++++.+++++|
T Consensus 157 ~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~l 234 (564)
T 2q28_A 157 GRPGGVYLDLPANVLAATMEKDEALTTIVKV-ENPS-PALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREF 234 (564)
T ss_dssp SSCCEEEEEEEHHHHHCEEEHHHHHHTCCCC-SCSS-CCEEECHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHH
T ss_pred CCCceEEEEcCHHHhhccccccccccccccc-cCCC-CCCCCCHHHHHHHHHHHHcCCCcEEEECcccccccHHHHHHHH
Confidence 589999999999865211100 0000010 1001 1112356779999999999999999999999888899999999
Q ss_pred HHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEEEcCCcc
Q 009060 259 ADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRV 338 (545)
Q Consensus 259 ae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~ 338 (545)
+|++++||++|++|||.||++||+++|. ..+++++++|+||.+|+++++..+.++..+.++.++||||.|+.
T Consensus 235 ae~~~~Pv~~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~ 306 (564)
T 2q28_A 235 IESAQIPFLPMSMAKGILEDTHPLSAAA--------ARSFALANADVVMLVGARLNWLLAHGKKGWAADTQFIQLDIEPQ 306 (564)
T ss_dssp HHHHTCCEEECGGGTTSSCTTCTTBCGG--------GHHHHHHHCSEEEEESCCCSGGGGGGTTTSCTTCEEEEEESCGG
T ss_pred HHHhCCCEEeccCccccCCCCChhhcCh--------HHHhHhhcCCEEEEECCcccccccccccccCCCCeEEEEeCCHH
Confidence 9999999999999999999999999985 24678899999999999997654433333446789999999999
Q ss_pred eecCCCccc----cccHHHHHHHHHHHhccCc----hhh-hhhh---hhcCCCCCCCcCCCCCCcCHHHHHHHHHhhC--
Q 009060 339 TVGNGPSLG----WVFMADFLSALAKKLRKNT----TAL-ENYR---RIYVPPGIPVKRAQNEPLRVNVLFKHIQDML-- 404 (545)
Q Consensus 339 ~~~~~~~~~----~~d~~~~l~~L~~~l~~~~----~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-- 404 (545)
+++ +.... ..|++.+|++|.+.++.+. ..| ..++ +...............++++.++++.|++.+
T Consensus 307 ~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 385 (564)
T 2q28_A 307 EID-SNRPIAVPVVGDIASSMQGMLAELKQNTFTTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLRE 385 (564)
T ss_dssp GTT-SSSCCSEEEESCHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCCCSSBCHHHHHHHHHHHHTT
T ss_pred Hhc-CCCCCCeEEEcCHHHHHHHHHHHhhhcCcCCcHHHHHHHHHHHHhhhhhhhhhhccCCCCcCHHHHHHHHHHHhcC
Confidence 887 33222 2489999999998775321 112 1111 1000000000011245799999999999999
Q ss_pred CCCCEEEecCCcccccccc-ccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhC
Q 009060 405 SGDTAVIAETGDSWFNCQK-LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCG 483 (545)
Q Consensus 405 ~~~~ivv~d~G~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~ 483 (545)
|++.+++.|.|++..+... +....+++++.++++|+||+++|+|+|++++ |+++||+++|||+|+|+++||+|+++++
T Consensus 386 ~~d~ivv~dg~~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaa~a-~~~~vv~i~GDGsf~~~~~el~ta~~~~ 464 (564)
T 2q28_A 386 NQDIYLVNEGANTLDNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVT-SGSPVVAIEGDSAFGFSGMEIETICRYN 464 (564)
T ss_dssp CTTCEEEEESSHHHHHHHHHSCCCSSSCEEESTTTTCTTCHHHHHHHHHHH-HCSCEEEEEEHHHHHTTGGGHHHHHHTT
T ss_pred CCCEEEEECCchHHHHHHHHhcccCCCeEecCCCCCcccchHHHHHHHhhc-CCCcEEEEEcchHhhccHHHHHHHHHhC
Confidence 8999999997766544332 3344445588889999999999999999999 8999999999999999999999999999
Q ss_pred CCeEEEEEeCCch-hhhh-h-hcCCCC--C-CCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 484 QRSIIFLINNGGY-TIEV-E-IHDGPY--N-VIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 484 lpi~ivV~NN~~~-g~~~-~-~~~~~~--~-~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+|+++||+||++| ++.. . .+.+.+ . ..+.+||.++|++||++ +++|++.+|+
T Consensus 465 l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~el 522 (564)
T 2q28_A 465 LPVTIVIFNNGGIYRGDGVDLSGAGAPSPTDLLHHARYDKLMDAFRGV-----GYNVTTTDEL 522 (564)
T ss_dssp CCEEEEEEECSBSSCSCCCCTTSSCCCCTTBCCTTCCGGGGGGGGTCE-----EEEECSHHHH
T ss_pred CCeEEEEEeCchhHHHHHHHHhccCCccccccCCCCCHHHHHHHcCCe-----EEEeCCHHHH
Confidence 9999999999995 5521 1 112212 1 23578999999999995 6788887776
No 20
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=100.00 E-value=2.9e-84 Score=708.06 Aligned_cols=493 Identities=14% Similarity=0.118 Sum_probs=379.0
Q ss_pred CccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHH
Q 009060 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (545)
.++++++|++.|+++||++|||+||+++++|+++|.++++|++|.+|||++|+|||+||||+|| +|||++|+|||++|+
T Consensus 10 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~N~ 89 (578)
T 3lq1_A 10 LTDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKRPVVLLCTSGTAAANY 89 (578)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHCCCEEEEECSSHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCceEEEecCcHHHHHHHHHHHHhhCCCEEEEECCchhhhhh
Confidence 4789999999999999999999999999999999987778999999999999999999999999 999999999999999
Q ss_pred HHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHH-------HHHHHHH
Q 009060 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHE-------LIDTAIS 177 (545)
Q Consensus 105 ~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~-------~l~~A~~ 177 (545)
++||++||.+++|||+||||++....+++ .+| ..||.++|+++|||+.++.+++++++ .+++||+
T Consensus 90 ~~gia~A~~d~vPll~itG~~p~~~~g~~-----~~Q---e~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~ 161 (578)
T 3lq1_A 90 FPAVAEANLSQIPLIVLTADRPHELRNVG-----APQ---AMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVD 161 (578)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTSS-----CTT---CCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCeEEEeCCCCHHhhcCC-----CCC---CcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877765 233 35789999999999999999998764 8999999
Q ss_pred HhhhC-CCcEEEEeCCCCCCCCCCCCCCCCC----Cc--ccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccc
Q 009060 178 TALKE-SKPVYISISCNLPGIPHPTFARDPV----PF--FLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAK 250 (545)
Q Consensus 178 ~a~~~-~GPV~l~iP~dv~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~ 250 (545)
.|.++ ||||||+||.|++.. +....... +. ..........++++.+++++++|.+ |||+|++|+|+.+ +
T Consensus 162 ~A~~gr~GPV~l~iP~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~-~rPvIl~G~g~~~-~ 237 (578)
T 3lq1_A 162 IAMKTPRGPVHLNFPLREPLV--PILEPSPFTATGKKHHHVHIYYTHEVLDDSSIQKMVTECTG-KKGVFVVGPIDKK-E 237 (578)
T ss_dssp HHHSSSCCCEEEEEECCSCCC--CCCSSCCC------------CCEEEEECHHHHHHHHHHTTT-SCEEEEECSCCCT-T
T ss_pred HhhCCCCCcEEEECccCCCCC--CCcccchhcccCccccccccccCccCCChHHHHHHHHHhcc-CCeEEEECCCCCh-H
Confidence 99985 899999999997653 11111100 00 0000001112356789999999999 9999999999976 5
Q ss_pred hHHHHHHHHHHhCCceEeCCC-CccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCc
Q 009060 251 AQKAFIELADATGYPIAIMPS-GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEK 329 (545)
Q Consensus 251 a~~~l~~lae~~~~Pv~tt~~-~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~ 329 (545)
+.+++++|+|++++||++|++ +++.+|++||+++|.+.+.... .....+.+||+||.+|+++.+.....|....++.+
T Consensus 238 ~~~~l~~lae~~~~PV~~t~~~~~~~~~~~hp~~~g~~~~~~~~-~~~~~~~~aDlvl~~G~~~~~~~~~~~~~~~~~~~ 316 (578)
T 3lq1_A 238 LEQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAFLKE-AEIIDKLTPEVVIRFGSMPVSKPLKNWLEQLSDIR 316 (578)
T ss_dssp CHHHHHHHHHHHTCCEEECGGGSTTSBSSCCSSEECCHHHHTTS-HHHHHHTCCSEEEEESSCCSCHHHHHHHHHCCSSE
T ss_pred HHHHHHHHHHhcCcEEEEecCCCCCCCCCCCccccccHHHHhcC-ccccccCCCCEEEEeCCcccchhHHHHHhcCCCCE
Confidence 679999999999999999965 6999999999999987444444 34456789999999999876544444443335679
Q ss_pred EEEEcCCcceecCCCcccc----ccHHHHHHHHHHHhccCc--hhh-hhhhhhcC--CC-CCCCcCCCCCCcCHHHHHHH
Q 009060 330 AIIVQPHRVTVGNGPSLGW----VFMADFLSALAKKLRKNT--TAL-ENYRRIYV--PP-GIPVKRAQNEPLRVNVLFKH 399 (545)
Q Consensus 330 ~i~id~d~~~~~~~~~~~~----~d~~~~l~~L~~~l~~~~--~~~-~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~ 399 (545)
+||||.|+.+++ +....+ .|++.+|++|.+.+.... ..| ..|++.+. .. .. .......++++.++++.
T Consensus 317 ~i~id~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 394 (578)
T 3lq1_A 317 FYVVDPGAAWKD-PIKAVTDMIHCDERFLLDIMQQNMPDDAKDAAWLNGWTSYNKVAREIVL-AEMANTTILEEGKIVAE 394 (578)
T ss_dssp EEEECTTCCCCC-TTCCCSEEECSCHHHHHHHHHHHSCSTTCCHHHHHHHHHHHHHHHHHHH-HHSCC----CTTHHHHH
T ss_pred EEEECCCCCcCC-CCcCceEEEEeCHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHHhHHHH-HhhhcCCCCCHHHHHHH
Confidence 999999999886 333222 489999999999775432 122 22221100 00 00 00122356899999999
Q ss_pred HHhhCCCCCEEEecCCcccccccccc--ccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHH
Q 009060 400 IQDMLSGDTAVIAETGDSWFNCQKLR--LPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEIS 477 (545)
Q Consensus 400 l~~~l~~~~ivv~d~G~~~~~~~~~~--~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ 477 (545)
|.+.+|++++++.|.|...++...+. .+++.+++.+.+.+++|+++|+|||+++ ++|+||+++|||||+|+++||+
T Consensus 395 l~~~l~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~~g~l~~AiGaa~--~~~~vv~i~GDGsf~~~~~eL~ 472 (578)
T 3lq1_A 395 LRRLLPDKAGLFIGNSMPIRDVDTYFSQIDKKIKMLANRGANGIDGVVSSALGASV--VFQPMFLLIGDLSFYHDMNGLL 472 (578)
T ss_dssp HHHHSCSEEEEEECSSHHHHHHHHHCCCCSSEEEEECCCSSCCSSSHHHHHHHHTT--TSSSEEEEEEHHHHHHTGGGGH
T ss_pred HHHhCCCCCeEEEeCccHHHHHHHhhcccCCCceEEeCCCccccccHHHHHHHHhc--CCCCEEEEEchHHHHhhHHHHH
Confidence 99999999999999988776654332 3445567777777778889999999974 6899999999999999999999
Q ss_pred HHHHhCCCeEEEEEeCCchhhhhhh---c-CCC----CCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 478 TMIRCGQRSIIFLINNGGYTIEVEI---H-DGP----YNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 478 ta~~~~lpi~ivV~NN~~~g~~~~~---~-~~~----~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
|++++++|+++||+||++|+|.+.+ . ... +...+++||.++|++||++ +++|++.+|+
T Consensus 473 ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~el 538 (578)
T 3lq1_A 473 MAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESLFGTSTELDFRFAAAFYDAD-----YHEAKSVDEL 538 (578)
T ss_dssp HHHHTTCCEEEEEECCC-------------------------CCCTHHHHHHTTCE-----EEECCSHHHH
T ss_pred hhccCCCCeEEEEEECCcCccccccccccccchhhhhccCCCCCCHHHHHHHcCCc-----eEecCCHHHH
Confidence 9999999999999999999993321 1 111 2233678999999999995 6788887776
No 21
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=100.00 E-value=5.3e-84 Score=705.36 Aligned_cols=491 Identities=18% Similarity=0.200 Sum_probs=392.3
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchH
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGL 102 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~ 102 (545)
+..|+++++|++.|+++||++|||+||+++++|++++.+. +|++|.++||++|+|||+||+|+|| |+||++|+|||++
T Consensus 7 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~-~i~~i~~~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG~~ 85 (568)
T 2c31_A 7 VELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDD-GQRFYSFRHEQHAGYAASIAGYIEGKPGVCLTVSAPGFL 85 (568)
T ss_dssp CCEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHT-TCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHH
T ss_pred CCcccHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHhC-CCcEEEeCcHHHHHHHHHHHHHHhCCCEEEEEcCCccHH
Confidence 3568999999999999999999999999999999999764 7999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhHhcCCcEEEEeCCCCCcccC--CCcccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhh
Q 009060 103 SVLNAIAGAYSENLPVICIVGGPNSNDYG--TNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTAL 180 (545)
Q Consensus 103 n~~~~l~~A~~~~~Pllvi~g~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~ 180 (545)
|+++||++||.+++|||+|||++++...+ ++ .+| ..||.++|+++|||+.++.+++++++.+++||+.|.
T Consensus 86 N~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~-----~~Q---~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~ 157 (568)
T 2c31_A 86 NGVTSLAHATTNCFPMILLSGSSEREIVDLQQG-----DYE---EMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAV 157 (568)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEECCHHHHHTTCC-----CTT---CCCHHHHSGGGSSEEEECCSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEccCCCccccCCCCC-----ccc---ccCHHHHHHhhhheeeecCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988665 23 233 357899999999999999999999999999999999
Q ss_pred h-CCCcEEEEeCCCCCCCCCCCCC--CCCCCcccCCCCCCchhhHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHH
Q 009060 181 K-ESKPVYISISCNLPGIPHPTFA--RDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIE 257 (545)
Q Consensus 181 ~-~~GPV~l~iP~dv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~ 257 (545)
+ +||||||+||.|++..+.+... ....+. ..+. ....++++.+++++++|.+||||+|++|.|+.++++.+++++
T Consensus 158 ~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~ 235 (568)
T 2c31_A 158 SGRPGGVYVDLPAKLFGQTISVEEANKLLFKP-IDPA-PAQIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRA 235 (568)
T ss_dssp SSSCCEEEEEEETHHHHCEEEHHHHHHHCCCC-SCSS-CCCCCCHHHHHHHHHHHHTCSSEEEEECHHHHHHTCHHHHHH
T ss_pred CCCCceEEEeCCHHHhhccccccccccccccc-cCCC-CCCCCCHHHHHHHHHHHHhCCCCEEEECcccccccHHHHHHH
Confidence 8 5899999999998642111000 000010 0000 011234667999999999999999999999998889999999
Q ss_pred HHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCccccc-ccCC-CCCcEEEEcC
Q 009060 258 LADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGY-SLLI-KKEKAIIVQP 335 (545)
Q Consensus 258 lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~-~~~~-~~~~~i~id~ 335 (545)
|||++|+||++|++|||.+|++||+++|.. .+++++++|+||.+|+++++..+.++ ..+. ++.++||||.
T Consensus 236 lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~ 307 (568)
T 2c31_A 236 LVEETGIPFLPMGMAKGLLPDNHPQSAAAT--------RAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDI 307 (568)
T ss_dssp HHHHHTCCEEECGGGTTSSCTTCTTBCGGG--------HHHHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEES
T ss_pred HHHHhCCCEEecccccccCCCCChhhcchH--------HHhhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeC
Confidence 999999999999999999999999999862 46788999999999999987655432 2343 5779999999
Q ss_pred CcceecCCCccc----cccHHHHHHHHHHHhccCc---hhh-hhhhh---hcCCCCCC-C-cCCCCCCcCHHHHHHHHHh
Q 009060 336 HRVTVGNGPSLG----WVFMADFLSALAKKLRKNT---TAL-ENYRR---IYVPPGIP-V-KRAQNEPLRVNVLFKHIQD 402 (545)
Q Consensus 336 d~~~~~~~~~~~----~~d~~~~l~~L~~~l~~~~---~~~-~~~~~---~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~ 402 (545)
|+.+++ +.... ..|++.+|++|.+.++... ..| ..+++ ........ . ...+..++++..+++.|++
T Consensus 308 d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 386 (568)
T 2c31_A 308 QANEMD-SNQPIAAPVVGDIKSAVSLLRKALKGAPKADAEWTGALKAKVDGNKAKLAGKMTAETPSGMMNYSNSLGVVRD 386 (568)
T ss_dssp CGGGTT-SSSCCSEEEESCHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCBCHHHHHHHHHH
T ss_pred CHHHhc-CCcCCCceeeCCHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHhhhhhhhhhhcccccCCCcCHHHHHHHHHH
Confidence 999886 33222 2489999999998875421 112 11111 00000000 0 0111357999999999999
Q ss_pred hC--CCCCEEEecCCcccccccc-ccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHH
Q 009060 403 ML--SGDTAVIAETGDSWFNCQK-LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTM 479 (545)
Q Consensus 403 ~l--~~~~ivv~d~G~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta 479 (545)
.+ |++.+++.|.|++..+... +....+++++.++++|+||+++|+|+|++++ |+++||+++|||+|+|+++||+|+
T Consensus 387 ~l~~~~~~iv~~dg~~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaala-~~~~vv~i~GDGsf~~~~~el~ta 465 (568)
T 2c31_A 387 FMLANPDISLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAV-TGKPVIAVEGDSAFGFSGMELETI 465 (568)
T ss_dssp HHHHCCSSEEEEESSHHHHHHHHHCCCCSTTCEEESTTTTCSSCHHHHHHHHHHH-HCSCEEEEEEHHHHHTTGGGHHHH
T ss_pred HhcCCCCeEEEECChhHHHHHHHHhcccCCCeEEcCCCCccccccHHHHHHHHhC-CCCcEEEEEcchHhhccHHHHHHH
Confidence 99 9999999997776554432 3444455588899999999999999999999 899999999999999999999999
Q ss_pred HHhCCCeEEEEEeCCch-hhhhhh-cCCCC--CCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 480 IRCGQRSIIFLINNGGY-TIEVEI-HDGPY--NVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 480 ~~~~lpi~ivV~NN~~~-g~~~~~-~~~~~--~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
+++++|+++||+||++| .+.... ++..+ ..++++||.++|++||++ +++|++.+|+
T Consensus 466 ~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~el 525 (568)
T 2c31_A 466 CRYNLPVTVIIMNNGGIYKGNEADPQPGVISCTRLTRGRYDMMMEAFGGK-----GYVANTPAEL 525 (568)
T ss_dssp HHTTCCEEEEEEESSBSSCSCCCCSBTTBCCTTBCCCCCHHHHHHTTTCE-----EEEESSHHHH
T ss_pred HHhCCCeEEEEEeCchhHHHHHHHhhcCCcccCcCCCCCHHHHHHHcCCe-----EEEeCCHHHH
Confidence 99999999999999995 442111 11111 226789999999999985 6788887776
No 22
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=100.00 E-value=4.7e-81 Score=679.67 Aligned_cols=482 Identities=14% Similarity=0.083 Sum_probs=363.9
Q ss_pred CccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHH
Q 009060 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (545)
.+|++|+|++.|+++||++|||+||+++++|+++|.++++|++|.+|||++|+|||+||||+|| +|||++|+|||++|+
T Consensus 7 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~N~ 86 (556)
T 3hww_A 7 NRRWAAVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANL 86 (556)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECCCTTSHHHHHHHHHCTTCEEEECSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHHTT
T ss_pred hhHHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHhhCCCceEEEecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHHhh
Confidence 4789999999999999999999999999999999987678999999999999999999999999 999999999999999
Q ss_pred HHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCChhh------HHHHHHHHHHH
Q 009060 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGD------AHELIDTAIST 178 (545)
Q Consensus 105 ~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~------~~~~l~~A~~~ 178 (545)
++||++||.+++|||+||||+++...+++. +| ..||.++|+++|||+.++.++++ +++.+++||+
T Consensus 87 ~~gia~A~~d~vPll~itG~~~~~~~g~~~-----~Q---~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~- 157 (556)
T 3hww_A 87 YPALIEAGLTGEKLILLTADRPPELIDCGA-----NQ---AIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALG- 157 (556)
T ss_dssp HHHHHHHHHHCCCEEEEEEECCGGGSSSSC-----TT---CCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHhCCCeEEEeCCCCHHHhccCC-----Cc---cccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHh-
Confidence 999999999999999999999999888762 33 35789999999999999999875 7778888873
Q ss_pred hhhCCCcEEEEeCCCCCCCCCCCCCC----CCCCc---ccCCCCCCchhhHHHH-HHHHHHHHhcCCCEEEcCccccccc
Q 009060 179 ALKESKPVYISISCNLPGIPHPTFAR----DPVPF---FLAPKVSNQLGLEAAV-EATADFLNKAVKPVLVGGPNIRVAK 250 (545)
Q Consensus 179 a~~~~GPV~l~iP~dv~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~i-~~~~~~l~~a~rpvi~~G~g~~~~~ 250 (545)
..+||||||+||.|++..+...... .+... ...+... ....+.+ ++++++|.+||||+|++|.+ +++
T Consensus 158 -~~r~GPV~i~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~A~rPvIl~G~~--~~~ 232 (556)
T 3hww_A 158 -TLHAGGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLR--EAPRLESEKQRDWFFWRQKRGVVVAGRM--SAE 232 (556)
T ss_dssp -SCCSSCEEEEEECCSCCSCCCSSTTHHHHHTTGGGGGCCSCSSC--CCCCCCCCCCTTHHHHTTSCEEEEECBC--CHH
T ss_pred -cCCCCCEEEeCCcCCCCCCCcccccccccccccccccccccccc--ccccccchhhhhhhhccCCCeEEEECCC--ChH
Confidence 1358999999999965421111000 00100 0001000 0011111 23456788999999999974 457
Q ss_pred hHHHHHHHHHHhCCceEeCCC-CccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCc
Q 009060 251 AQKAFIELADATGYPIAIMPS-GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEK 329 (545)
Q Consensus 251 a~~~l~~lae~~~~Pv~tt~~-~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~ 329 (545)
+.++|++|+|++++||++|++ +||.++++||+++| ++.+++++++||+||++|+++.+..+..|....+..+
T Consensus 233 a~~~l~~lae~~~~PV~~t~~~~~~~~~~~~~~~lg-------~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~ 305 (556)
T 3hww_A 233 EGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLG-------NAKATSELQQAQIVVQLGSSLTGKRLLQWQASCEPEE 305 (556)
T ss_dssp HHHHHHHHHHHHTCCEEECTTTCSCCSSCCHHHHTT-------SHHHHHHHTTCSEEEEESBCCCCHHHHHHHHHCCCSE
T ss_pred HHHHHHHHHHhcCCEEEEccCCCCCCCcCcHHHHhc-------CchhhhcccCCCEEEEcCCCcccHHHHHHHhcCCCCe
Confidence 899999999999999999985 88999999998875 3578899999999999999998766555543234448
Q ss_pred EEEEcCCcceecCCCcccc----ccHHHHHHHHHHHhccC-chhhhhhhhhcCCCCCCCcCCCCCCcCHHHHHHHHHhhC
Q 009060 330 AIIVQPHRVTVGNGPSLGW----VFMADFLSALAKKLRKN-TTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDML 404 (545)
Q Consensus 330 ~i~id~d~~~~~~~~~~~~----~d~~~~l~~L~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 404 (545)
+||||.|+.+++ +....+ .|++.+|++|.+..... ...+..+++..... ......++++.++++.|.+.+
T Consensus 306 ~i~id~d~~~~~-~~~~~~~~i~~d~~~~l~~l~~~~~~~w~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l 380 (556)
T 3hww_A 306 YWIVDDIEGRLD-PAHHRGRRLIANIADWLELHPAEKRQPWCVEIPRLAEQAMQA----VIARRDAFGEAQLAHRICDYL 380 (556)
T ss_dssp EEEEESSCSCCC-TTCCSEEEEESCHHHHHHHSCCCCCCCCCSSHHHHHHHHHHH----HHTTCCSSSHHHHHHTGGGTC
T ss_pred EEEECCCCccCC-CCCCceEEEEcCHHHHHHhcccccchHHHHHHHHHHHHHHHH----HhhcccCcCHHHHHHHHHHhC
Confidence 999999999997 333332 48999999874321110 01122222111000 001245799999999999999
Q ss_pred CCCCEEEecCCccccccccc-cccCCCeeEec-cCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHh
Q 009060 405 SGDTAVIAETGDSWFNCQKL-RLPENCGYEFQ-MQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRC 482 (545)
Q Consensus 405 ~~~~ivv~d~G~~~~~~~~~-~~~~~~~~~~~-~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~ 482 (545)
|++++++.+.+...++...+ ..+.+.+++.+ +..|.||+ +|+|+|++++ ++++||+++|||||+|+++||+|++++
T Consensus 381 ~~~~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~G~-l~~A~Gaa~a-~~~~vv~i~GDGsf~~~~~eL~ta~~~ 458 (556)
T 3hww_A 381 PEQGQLFVGNSLVVRLIDALSQLPAGYPVYSNRGASGIDGL-LSTAAGVQRA-SGKPTLAIVGDLSALYDLNALALLRQV 458 (556)
T ss_dssp CTTCEEEECSSHHHHHHHHHCCCCTTCCEEECCSSCCSSSH-HHHHHHHHHH-HCCCEEEEEEHHHHHHTGGGHHHHTTC
T ss_pred CCCCeEEEeCCcHHHHHHHhccCCCCceEEecCcccccccH-HHHHHHHHhc-CCCcEEEEEccHHhhhcchhhHhhccc
Confidence 99999998766543332222 22434446665 45677788 9999999999 799999999999999999999999999
Q ss_pred CCCeEEEEEeCCchhhhhhh------cCCCCCCCCCCCHHHHHHHcCCCCCceeEEEEeeceee
Q 009060 483 GQRSIIFLINNGGYTIEVEI------HDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVSIYKMC 540 (545)
Q Consensus 483 ~lpi~ivV~NN~~~g~~~~~------~~~~~~~l~~~d~~~lA~a~G~~~~~~~~~~v~~~~~~ 540 (545)
++|+++||+||++|+|...+ .+..+...+++||.++|++||++ +++|++.+|+
T Consensus 459 ~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-----~~~v~~~~~l 517 (556)
T 3hww_A 459 SAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFELK-----YHRPQNWQEL 517 (556)
T ss_dssp SSCEEEEEEESCC-----------------CCCCCCCCSHHHHHHTTCE-----EECCSSHHHH
T ss_pred CCCcEEEEEECCCCCcccCCCCcchhHHHhccCCCCCCHHHHHHHcCCc-----EEecCCHHHH
Confidence 99999999999999983221 11123445789999999999996 5678877765
No 23
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=99.82 E-value=5.7e-22 Score=180.99 Aligned_cols=136 Identities=17% Similarity=0.154 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCC--Cc--cceecCCCCCHHHH--
Q 009060 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHP--HF--IGTYWGAVSSSFCG-- 297 (545)
Q Consensus 224 ~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hp--l~--~G~~~G~~~~~~~~-- 297 (545)
.+++++++|++||||+|++|+|+.++++.+++++|+|++++||++|++|||.||++|| +| +|.+ |..+++.++
T Consensus 23 ~v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~~gkg~~~~~hp~~~~~~~G~~-G~~~~~~~~~~ 101 (170)
T 3cf4_G 23 SPEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHML-GFYLTDPKWPG 101 (170)
T ss_dssp CHHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHH-HHHTTCTTCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECcccCcccCCCChhhhcceeeec-cccCChhhhhH
Confidence 4889999999999999999999999899999999999999999999999999999999 99 9874 655655667
Q ss_pred -HHhhcCCEEEEeCCCC--CCCcccccccCCCCCcEEEEcCCcceecCCCccccccHHHHHHHHHHHh
Q 009060 298 -EIVESADAYVFVGPIF--NDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKL 362 (545)
Q Consensus 298 -~~l~~aD~vl~lG~~~--~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~d~~~~l~~L~~~l 362 (545)
+.+++||+||++|+++ +++.+..|..+.+ .++|+++....... ...+..+..+++++.|.+.+
T Consensus 102 ~~~~~~aDlvl~iG~~~~~~~~~t~~~~~~~~-~~iI~i~~~~~~~~-~~~~~~l~~~~~l~~L~~~~ 167 (170)
T 3cf4_G 102 LDGNGNYDMIITIGFKKFYINQVLSAAKNFSN-LKTIAIERGYIQNA-TMSFGNLSKADHYAALDELI 167 (170)
T ss_dssp SSSSCCCSEEEEESCCHHHHHHHHHHHHHHCC-CCEEECSSSCCTTS-SEECCCCCHHHHHHHHHHHH
T ss_pred HHHhhcCCEEEEECCccCccccccccccccCC-CeEEEECCCcccch-hhhhccCCHHHHHHHHHHHH
Confidence 7889999999999999 8877766665556 78886655432111 23455667899999998765
No 24
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=99.64 E-value=1.4e-17 Score=150.87 Aligned_cols=102 Identities=12% Similarity=0.177 Sum_probs=84.0
Q ss_pred HHHH-HHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCC-CC-C--CccceecCCCCCHHHHHH
Q 009060 225 VEAT-ADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPE-HH-P--HFIGTYWGAVSSSFCGEI 299 (545)
Q Consensus 225 i~~~-~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~-~h-p--l~~G~~~G~~~~~~~~~~ 299 (545)
++++ +++|++||||+|++|+ +..+++.++|++|+|+ ++||++|++|+|.||+ +| | +++|. + ...+..
T Consensus 24 i~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT~~g~g~~~~~~~~p~~~~~G~--~----~~g~~~ 95 (174)
T 1ytl_A 24 KGKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVATGSAITRFIDAGLGEKVNYAVL--H----ELTQFL 95 (174)
T ss_dssp CHHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEETTHHHHHHHTTCGGGSEEECH--H----HHHHHH
T ss_pred HHHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEcccccCcCCCCCCCcccccccc--H----HHHHHh
Confidence 5788 9999999999999999 9888999999999999 9999999999999999 99 8 44442 1 134444
Q ss_pred h----------hcCCEEEEeCCCCC--CCcccccccCCCCCcEEEEc
Q 009060 300 V----------ESADAYVFVGPIFN--DYSSVGYSLLIKKEKAIIVQ 334 (545)
Q Consensus 300 l----------~~aD~vl~lG~~~~--~~~~~~~~~~~~~~~~i~id 334 (545)
. ++||+||++|++++ ++.+..+..+.++.++||||
T Consensus 96 ~~~~~~~~~~~~~aDLvI~iG~rf~~~~~~t~~~~~fap~akii~Id 142 (174)
T 1ytl_A 96 LDPDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAID 142 (174)
T ss_dssp HSTTCCCTTSSCCCSEEEEESCCHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred hhhhhhhhcccCCCCEEEEECCcCCccccccccccccCCCCeEEEeC
Confidence 4 89999999999996 44344555555778999986
No 25
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.60 E-value=1.4e-15 Score=157.06 Aligned_cols=165 Identities=13% Similarity=0.042 Sum_probs=125.6
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhc---CCCCeEEecCchhHHHHHHhHHhhhcCceEEEEcCCcc
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA---EPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVG 100 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~---~~~i~~i~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG 100 (545)
...|+|.+++++.+.+.|++++||+||+...++++.+.+ ..+++++.++||.+|+.||.|+++..+. +++.|+|||
T Consensus 20 ~~~~~GneAva~~~~~ag~~~v~~yPgtP~t~i~~~l~~~~~~~g~~~i~~e~E~~a~~~a~Gaa~aG~r-~~~~ts~~G 98 (395)
T 1yd7_A 20 PDFIQGDEAIARAAILAGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQMEDEIASIAAAIGASWAGAK-AMTATSGPG 98 (395)
T ss_dssp EEEEEHHHHHHHHHHHHTCCEEEECCBTTTBCHHHHHHHHGGGGTCEEEECSCHHHHHHHHHHHHHTTCC-EEEEEETTH
T ss_pred eEEeEHHHHHHHHHHHcCCCEEEEEECcchHHHHHHHHHhhhhcCcEEEEeCCHHHHHHHHHHHHHhCCc-EEEEeCchH
Confidence 356899999999999999999999999999999998864 3469999999999999999999988656 455799999
Q ss_pred hHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHH--hh--hceeEEEEeCChhhHHHHHHHHH
Q 009060 101 GLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRC--FQ--AITCSQAVVNNLGDAHELIDTAI 176 (545)
Q Consensus 101 ~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~--~~~k~~~~v~~~~~~~~~l~~A~ 176 (545)
+++++.+|..+...++|+++++++++....+.. ..+ +..|.... .. ++.++...+.+++++..++..||
T Consensus 99 ~~~~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~-----~~~--~~sd~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~ 171 (395)
T 1yd7_A 99 FSLMQENIGYAVMTETPVVIVDVQRSGPSTGQP-----TLP--AQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAF 171 (395)
T ss_dssp HHHHTTTCC----CCCCEEEEEEC---------------------------------CCCCEEECCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeeCCCCCCCCC-----ccc--chhHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHHH
Confidence 999999999999999999999999876643321 111 11122221 22 56788999999999999999999
Q ss_pred HHhhhCCCcEEEEeCCCCCC
Q 009060 177 STALKESKPVYISISCNLPG 196 (545)
Q Consensus 177 ~~a~~~~GPV~l~iP~dv~~ 196 (545)
+.|...+.||.+.+|.++.+
T Consensus 172 ~lA~~~~~PVi~~~~~~l~h 191 (395)
T 1yd7_A 172 NLSEKYRTPVILLTDAEVGH 191 (395)
T ss_dssp HHHHHHTSEEEEEECHHHHH
T ss_pred HHHHHHCCCEEEEcchhHhC
Confidence 99998789999999987644
No 26
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.59 E-value=1.7e-15 Score=175.39 Aligned_cols=156 Identities=15% Similarity=0.066 Sum_probs=115.8
Q ss_pred CCCccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhc-----CCC-----CeEEecCchhHHHHHHhHHhhhcC-ceE
Q 009060 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA-----EPE-----LNLVGCCNELNAGYAADGYARSRG-VGA 92 (545)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~-----~~~-----i~~i~~~hE~~A~~~A~gyar~tg-~gv 92 (545)
...|+|.++++... ..|++.++++|++++.++.+.+.+ ..+ ..++.+.+|.+|+.||.|.+ .+| +.+
T Consensus 4 ~~~~~GNeAvA~~a-~ag~~~~~~YPITPstei~e~l~~~~~~g~~~~~G~~~~v~~~esE~aA~~aaiGAa-~aGaR~~ 81 (1231)
T 2c42_A 4 MMTTDGNTATAHVA-YAMSEVAAIYPITPSSTMGEEADDWAAQGRKNIFGQTLTIREMQSEAGAAGAVHGAL-AAGALTT 81 (1231)
T ss_dssp EEEEEHHHHHHHHH-HHHCSEEEECCCTTTHHHHHHHHHHHHHTCCCTTSCCCEEEECSSHHHHHHHHHHHH-HTTCCEE
T ss_pred eEEccHHHHHHHHH-HHCCCEEEEECCCCchHHHHHHHHHHHcCCchhcCCceEEEecCChHHHHHHHHHHH-HcCChHh
Confidence 34689999999987 789999999999999999998842 122 38899999999999999955 558 554
Q ss_pred EEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhcee-EEEEeCChhhHHHH
Q 009060 93 CVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITC-SQAVVNNLGDAHEL 171 (545)
Q Consensus 93 ~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k-~~~~v~~~~~~~~~ 171 (545)
..|++||+.-+...|..+...++|+|+...+++....+-. ..+ +..|. ++...+. -.....+++++..+
T Consensus 82 -t~Ts~~Gl~lm~e~l~~~ag~~~P~Vi~va~R~g~~~gls-----i~~--~hsd~--~~ar~~G~~vl~pss~QEa~dl 151 (1231)
T 2c42_A 82 -TFTASQGLLLMIPNMYKISGELLPGVFHVTARAIAAHALS-----IFG--DHQDI--YAARQTGFAMLASSSVQEAHDM 151 (1231)
T ss_dssp -EEECHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSSSBC-----CSC--CSHHH--HTTTTSSCEEEECCSHHHHHHH
T ss_pred -hhccHHHHHHHHHHHHHHhCCCCCEEEEECCCCccCCCCc-----CCC--chhhH--HHHhcCCcEEEECCCHHHHHHH
Confidence 4589999999999998766678999999998875422211 122 11232 2222222 33566788999999
Q ss_pred HHHHHHHhhhCCCcEEEEeC
Q 009060 172 IDTAISTALKESKPVYISIS 191 (545)
Q Consensus 172 l~~A~~~a~~~~GPV~l~iP 191 (545)
+..||+.|...+-||.+...
T Consensus 152 ~~~Af~lAek~~~PVi~~~D 171 (1231)
T 2c42_A 152 ALVAHLAAIESNVPFMHFFD 171 (1231)
T ss_dssp HHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEec
Confidence 99999999877777776654
No 27
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.28 E-value=2.6e-12 Score=132.37 Aligned_cols=86 Identities=19% Similarity=0.159 Sum_probs=72.0
Q ss_pred cCccccchhHHHHHHhhhhcC----CCeEEEEEcchhhcccH--HHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCC
Q 009060 436 MQYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQVTA--QEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 509 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p----~r~vv~i~GDGsf~~~~--~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~~~~~~~ 509 (545)
.+.|+||+++|.|+|+++|.+ ++.|||++|||+|+++. .+|.+|.++++|+++||.|| +|++.... ...
T Consensus 159 ~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN-~~~i~~~~----~~~ 233 (400)
T 2bfd_A 159 TISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNN-GYAISTPT----SEQ 233 (400)
T ss_dssp CCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEEC-SEETTEEG----GGT
T ss_pred ccCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECC-ceeeeecc----ccc
Confidence 456999999999999999987 89999999999999987 99999999999999988888 79982110 012
Q ss_pred CCCCCHHHHHHHcCCCC
Q 009060 510 IKNWDYTGLVNAIHNGE 526 (545)
Q Consensus 510 l~~~d~~~lA~a~G~~~ 526 (545)
....||.++|++||+++
T Consensus 234 ~~~~d~~~~a~a~G~~~ 250 (400)
T 2bfd_A 234 YRGDGIAARGPGYGIMS 250 (400)
T ss_dssp CSSSTTGGGTGGGTCEE
T ss_pred CCCCCHHHHHHHcCCcE
Confidence 34579999999999963
No 28
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.27 E-value=3.8e-12 Score=129.64 Aligned_cols=87 Identities=17% Similarity=0.046 Sum_probs=70.9
Q ss_pred ccCccccchhHHHHHHhhhhcC----CCeEEEEEcchhhccc-H-HHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 009060 435 QMQYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQVT-A-QEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (545)
Q Consensus 435 ~~~~g~mG~~l~aAiGaala~p----~r~vv~i~GDGsf~~~-~-~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~~~~~~ 508 (545)
..+.|.||+++|.|+|+++|.+ ++.||+++|||+|++. . .+|.+++++++|+++||.||+ |++.... ..
T Consensus 138 ~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~-~gi~~~~----~~ 212 (368)
T 1w85_A 138 LPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR-FAISTPV----EK 212 (368)
T ss_dssp CCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECS-EETTEEG----GG
T ss_pred CCCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCC-ccceecc----cc
Confidence 4577999999999999999964 8999999999999985 3 469999999999888888885 9882110 11
Q ss_pred CCCCCCHHHHHHHcCCCC
Q 009060 509 VIKNWDYTGLVNAIHNGE 526 (545)
Q Consensus 509 ~l~~~d~~~lA~a~G~~~ 526 (545)
....+||.++|++||+++
T Consensus 213 ~~~~~d~~~~a~a~G~~~ 230 (368)
T 1w85_A 213 QTVAKTLAQKAVAAGIPG 230 (368)
T ss_dssp TCSCSCSGGGGGGTTCCE
T ss_pred ccCCCCHHHHHHHCCCCE
Confidence 224579999999999974
No 29
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.27 E-value=2.3e-12 Score=131.74 Aligned_cols=89 Identities=16% Similarity=0.110 Sum_probs=67.4
Q ss_pred ccchhHHHHHHhhhhcCCCeEEEEEcchhhccc-HHH-HHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCCHHH
Q 009060 440 SIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT-AQE-ISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTG 517 (545)
Q Consensus 440 ~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~-~~e-L~ta~~~~lpi~ivV~NN~~~g~~~~~~~~~~~~l~~~d~~~ 517 (545)
+||+++|+|+|++++.++++||+++|||+|+++ .+| |.+++++++|+++||.||+ |++.... ......+||.+
T Consensus 149 ~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~-~gi~~~~----~~~~~~~d~~~ 223 (367)
T 1umd_A 149 HVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNF-YAISVDY----RHQTHSPTIAD 223 (367)
T ss_dssp THHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECS-EETTEEH----HHHCSSSCSGG
T ss_pred hhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCC-eeeccCh----hhccCCCCHHH
Confidence 455555555555566789999999999999998 999 9999999999888888888 9982110 00124579999
Q ss_pred HHHHcCCCCCceeEEEEeece
Q 009060 518 LVNAIHNGEGKCWTAKVSIYK 538 (545)
Q Consensus 518 lA~a~G~~~~~~~~~~v~~~~ 538 (545)
+|++||++ +++|+..+
T Consensus 224 ~a~a~G~~-----~~~Vdg~d 239 (367)
T 1umd_A 224 KAHAFGIP-----GYLVDGMD 239 (367)
T ss_dssp GGGGTTSC-----EEEEETTC
T ss_pred HHHHcCCc-----EEEeCCCC
Confidence 99999997 45666543
No 30
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.23 E-value=5.2e-12 Score=138.28 Aligned_cols=107 Identities=21% Similarity=0.304 Sum_probs=78.1
Q ss_pred cCHHHHHHHHHhhCC-CCCEEEecCCccc----ccccc---ccccCC-C----------eeEeccCccccchhHHHHHHh
Q 009060 391 LRVNVLFKHIQDMLS-GDTAVIAETGDSW----FNCQK---LRLPEN-C----------GYEFQMQYGSIGWSVGATLGY 451 (545)
Q Consensus 391 ~~~~~~~~~l~~~l~-~~~ivv~d~G~~~----~~~~~---~~~~~~-~----------~~~~~~~~g~mG~~l~aAiGa 451 (545)
+....++..|...+. +++.++.|.|... .+.-+ +...+. . +-....+.|+||+++|+|+|+
T Consensus 56 lg~v~l~~aL~~~~~~~~D~~v~~~GH~~y~~~~l~G~~~~~~~~r~~~g~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~ 135 (629)
T 2o1x_A 56 LGAVDIITALHYVLDSPRDRILFDVGHQAYAHKILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHASTSLTNALGM 135 (629)
T ss_dssp HHTHHHHHHHHHHSCTTTSEEEESSSTTCHHHHHTTTTGGGGGGTTSTTSCCSSCCGGGCTTCCSCCSSSSCHHHHHHHH
T ss_pred hhHHHHHHHHHhhcCCCCCeEEecCchHHHHHHHHhCcHhHHhCcccCCCCCCCCCCCCCCCCCcCCCcccccHhHHHHH
Confidence 455677778876666 6778888888522 11100 111110 0 012356789999999999999
Q ss_pred hhh----cCCCeEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhh
Q 009060 452 AQA----AKDKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTI 498 (545)
Q Consensus 452 ala----~p~r~vv~i~GDGsf~--~~~~eL~ta~~~~lpi~ivV~NN~~~g~ 498 (545)
++| .++++||+++|||+|+ |..++|.||+++++|+++ |+||++|++
T Consensus 136 AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~-IvnnN~~~i 187 (629)
T 2o1x_A 136 ALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLI-VLNDNEMSI 187 (629)
T ss_dssp HHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEE-EEEECSBSS
T ss_pred HHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEE-EEECCCCCC
Confidence 999 4899999999999999 778999999999999755 567778987
No 31
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=99.21 E-value=6.7e-12 Score=136.53 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=73.4
Q ss_pred cCccccchhHHHHHHhhhhcC-----CCeEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 009060 436 MQYGSIGWSVGATLGYAQAAK-----DKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p-----~r~vv~i~GDGsf~--~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~~~~~~ 508 (545)
.+.|+||+++|+|+|+++|.+ +++|+|++|||+|+ |+.++|.++.++++|.+++|+||++|++ .+...
T Consensus 118 ~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i-----~~~~~ 192 (616)
T 3mos_A 118 VATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQ-----SDPAP 192 (616)
T ss_dssp SCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCS-----SSBCT
T ss_pred ccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEEEEEECCCCCC-----cCCcc
Confidence 367999999999999999976 78999999999999 7889999999999999999999999998 22111
Q ss_pred -CCCCCCHHHHHHHcCCCC
Q 009060 509 -VIKNWDYTGLVNAIHNGE 526 (545)
Q Consensus 509 -~l~~~d~~~lA~a~G~~~ 526 (545)
.....||.+++++||+++
T Consensus 193 ~~~~~~~~~~~~~a~G~~~ 211 (616)
T 3mos_A 193 LQHQMDIYQKRCEAFGWHA 211 (616)
T ss_dssp TTTCHHHHHHHHHHTTCEE
T ss_pred cccChHHHHHHHHHcCCeE
Confidence 123468999999999963
No 32
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.20 E-value=1.5e-11 Score=126.66 Aligned_cols=86 Identities=17% Similarity=0.163 Sum_probs=67.6
Q ss_pred cCccccchhHHHHHHhhhhc----CCCeEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCC
Q 009060 436 MQYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 509 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~----p~r~vv~i~GDGsf~~~--~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~~~~~~~ 509 (545)
.+.|+||+++|.|+|+++|. +++.||+++|||+|.+. ..+|++++++++|+++||.|| +|++.... . ..
T Consensus 178 ~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN-~~gi~~~~-~---~~ 252 (407)
T 1qs0_A 178 TISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNN-QWAISTFQ-A---IA 252 (407)
T ss_dssp CCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEEC-SEETTEEG-G---GG
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECC-Ccceeecc-c---cc
Confidence 35799999999999999985 58999999999999986 467999999999955555555 79982111 0 11
Q ss_pred C-CCCCHHHHHHHcCCCC
Q 009060 510 I-KNWDYTGLVNAIHNGE 526 (545)
Q Consensus 510 l-~~~d~~~lA~a~G~~~ 526 (545)
. ...||.++|++||+++
T Consensus 253 ~~~~~d~a~~a~a~G~~~ 270 (407)
T 1qs0_A 253 GGESTTFAGRGVGCGIAS 270 (407)
T ss_dssp TTTTCCSTHHHHHTTCEE
T ss_pred cCCCCCHHHHHHHcCCeE
Confidence 1 3579999999999974
No 33
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=99.19 E-value=1.3e-11 Score=134.00 Aligned_cols=86 Identities=22% Similarity=0.302 Sum_probs=73.6
Q ss_pred cCccccchhHHHHHHhhhhcC-----------CCeEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhhhhh
Q 009060 436 MQYGSIGWSVGATLGYAQAAK-----------DKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIEVEI 502 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p-----------~r~vv~i~GDGsf~--~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~ 502 (545)
...|+||+++|+|+|+++|.+ +++|++++|||+|+ |+.++|.+|.++++|.+++|+||++|++....
T Consensus 111 ~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~i~~~~ 190 (632)
T 3l84_A 111 IATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEGDV 190 (632)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEG
T ss_pred cCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCcccccch
Confidence 456999999999999999987 89999999999999 78899999999999999999999999982111
Q ss_pred cCCCCCCCCCCCHHHHHHHcCCCC
Q 009060 503 HDGPYNVIKNWDYTGLVNAIHNGE 526 (545)
Q Consensus 503 ~~~~~~~l~~~d~~~lA~a~G~~~ 526 (545)
......||.+++++||+++
T Consensus 191 -----~~~~~~d~~~~~~a~G~~~ 209 (632)
T 3l84_A 191 -----GLAFNENVKMRFEAQGFEV 209 (632)
T ss_dssp -----GGTCCCCHHHHHHHTTCEE
T ss_pred -----hhhcChhHHHHHHHcCCeE
Confidence 1123579999999999963
No 34
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=99.19 E-value=1.4e-11 Score=134.67 Aligned_cols=86 Identities=17% Similarity=0.191 Sum_probs=70.2
Q ss_pred cCccccchhHHHHHHhhhhcC--------------CCeEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhh
Q 009060 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIE 499 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p--------------~r~vv~i~GDGsf~--~~~~eL~ta~~~~lpi~ivV~NN~~~g~~ 499 (545)
...|+||+++|+|+|+|+|.+ +++|+|++|||+++ |+.++|.+|.++++|.+|+|+||++|++.
T Consensus 113 ~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~~i~ 192 (663)
T 3kom_A 113 TTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNISID 192 (663)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC----
T ss_pred cCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCcccc
Confidence 467999999999999999976 78999999999998 67889999999999999999999999982
Q ss_pred hhhcCCCCCCCCCCCHHHHHHHcCCCC
Q 009060 500 VEIHDGPYNVIKNWDYTGLVNAIHNGE 526 (545)
Q Consensus 500 ~~~~~~~~~~l~~~d~~~lA~a~G~~~ 526 (545)
. +.......||.+++++||+++
T Consensus 193 ~-----~~~~~~~~d~~~~~~a~G~~~ 214 (663)
T 3kom_A 193 G-----DTKGWFSDNTPERFRAYGWHV 214 (663)
T ss_dssp ------CGGGTCCCCHHHHHHHTTCEE
T ss_pred c-----chhhhcchhHHHHHHHCCCeE
Confidence 1 111223579999999999963
No 35
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=99.19 E-value=1.2e-11 Score=135.67 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=73.0
Q ss_pred cCccccchhHHHHHHhhhhcC--------------CCeEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhh
Q 009060 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIE 499 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p--------------~r~vv~i~GDGsf~--~~~~eL~ta~~~~lpi~ivV~NN~~~g~~ 499 (545)
...|+||+++|+|+|+++|.+ +++|+|++|||+|+ |+.++|.+|.++++|.+|+|+||++|++.
T Consensus 152 ~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~ 231 (711)
T 3uk1_A 152 TTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISID 231 (711)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETT
T ss_pred cCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCcccc
Confidence 356999999999999999976 78999999999999 67889999999999999999999999982
Q ss_pred hhhcCCCCCCCCCCCHHHHHHHcCCCC
Q 009060 500 VEIHDGPYNVIKNWDYTGLVNAIHNGE 526 (545)
Q Consensus 500 ~~~~~~~~~~l~~~d~~~lA~a~G~~~ 526 (545)
... ......||.+++++||+++
T Consensus 232 ~~~-----~~~~~~d~~~~~~a~G~~~ 253 (711)
T 3uk1_A 232 GDV-----VNWFHDDTPKRFEAYGWNV 253 (711)
T ss_dssp EEG-----GGTCCCCHHHHHHHTTCEE
T ss_pred cch-----hhhcCCCHHHHHHHcCCcE
Confidence 111 1113579999999999963
No 36
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=99.16 E-value=2.6e-11 Score=132.75 Aligned_cols=85 Identities=20% Similarity=0.262 Sum_probs=72.8
Q ss_pred cCccccchhHHHHHHhhhhcC--------------CCeEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhh
Q 009060 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIE 499 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p--------------~r~vv~i~GDGsf~--~~~~eL~ta~~~~lpi~ivV~NN~~~g~~ 499 (545)
...|+||+++|+|+|+|+|.+ +++|+|++|||+++ ++.++|.+|.++++|.+|+|+||++|++.
T Consensus 137 ~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~ 216 (690)
T 3m49_A 137 ATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLD 216 (690)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBCSS
T ss_pred cCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCeecc
Confidence 356999999999999999976 88999999999999 57889999999999999999999999982
Q ss_pred hhhcCCCCCCCCCCCHHHHHHHcCCC
Q 009060 500 VEIHDGPYNVIKNWDYTGLVNAIHNG 525 (545)
Q Consensus 500 ~~~~~~~~~~l~~~d~~~lA~a~G~~ 525 (545)
++.......|+.+++++||++
T Consensus 217 -----~~~~~~~~~d~~~~~~a~G~~ 237 (690)
T 3m49_A 217 -----GDLNRSFSESVEDRYKAYGWQ 237 (690)
T ss_dssp -----SBGGGTCCCCHHHHHHHHTCE
T ss_pred -----cchhhccchhHHHHHHHcCCc
Confidence 211122357999999999996
No 37
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=99.14 E-value=3e-11 Score=132.84 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=73.3
Q ss_pred ccCccccchhHHHHHHhhhhcC--------------CCeEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhh
Q 009060 435 QMQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTI 498 (545)
Q Consensus 435 ~~~~g~mG~~l~aAiGaala~p--------------~r~vv~i~GDGsf~--~~~~eL~ta~~~~lpi~ivV~NN~~~g~ 498 (545)
..+.|+||+++|+|+|+++|.+ +++|+|++|||+++ |+..+|.++.++++|.+++|+||++|++
T Consensus 110 ~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i 189 (669)
T 2r8o_A 110 ETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISI 189 (669)
T ss_dssp CSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEET
T ss_pred ccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCCcEe
Confidence 4567999999999999999975 88999999999999 6788899999999999999999999998
Q ss_pred hhhhcCCCCCCCCCCCHHHHHHHcCCCC
Q 009060 499 EVEIHDGPYNVIKNWDYTGLVNAIHNGE 526 (545)
Q Consensus 499 ~~~~~~~~~~~l~~~d~~~lA~a~G~~~ 526 (545)
..... .....|+.+++++||+++
T Consensus 190 ~~~~~-----~~~~~d~~~~~~a~G~~~ 212 (669)
T 2r8o_A 190 DGHVE-----GWFTDDTAMRFEAYGWHV 212 (669)
T ss_dssp TEEGG-----GTCCCCHHHHHHHTTCEE
T ss_pred ccccc-----cccCccHHHHHHHCCCeE
Confidence 21111 012469999999999963
No 38
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=99.11 E-value=3.3e-11 Score=132.13 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=73.1
Q ss_pred ccCccccchhHHHHHHhhhhc--------------CCCeEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhh
Q 009060 435 QMQYGSIGWSVGATLGYAQAA--------------KDKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTI 498 (545)
Q Consensus 435 ~~~~g~mG~~l~aAiGaala~--------------p~r~vv~i~GDGsf~--~~~~eL~ta~~~~lpi~ivV~NN~~~g~ 498 (545)
....|+||+++|.|+|+++|. ++++|+|++|||+++ |+..+|.++.++++|.+++|+||++|++
T Consensus 114 ~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i 193 (651)
T 2e6k_A 114 EVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISI 193 (651)
T ss_dssp CSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCEET
T ss_pred eeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCCccc
Confidence 356799999999999999986 388999999999999 6788999999999999999999999998
Q ss_pred hhhhcCCCCCCCCCCCHHHHHHHcCCCC
Q 009060 499 EVEIHDGPYNVIKNWDYTGLVNAIHNGE 526 (545)
Q Consensus 499 ~~~~~~~~~~~l~~~d~~~lA~a~G~~~ 526 (545)
..... . .+ ..|+.+++++||+++
T Consensus 194 ~~~~~-~---~~-~~d~~~~~~a~G~~~ 216 (651)
T 2e6k_A 194 DGPTD-L---AF-TEDVLARYRAYGWQT 216 (651)
T ss_dssp TEEGG-G---TC-CSCHHHHHHHTTCEE
T ss_pred ccccc-c---cc-CccHHHHHHhCCCeE
Confidence 21111 1 12 579999999999963
No 39
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=99.11 E-value=3.4e-11 Score=131.75 Aligned_cols=107 Identities=20% Similarity=0.268 Sum_probs=72.4
Q ss_pred cCHHHHHHHHHhhCC-CCCEEEecCCcccc----cc---c-c--cc-------ccCCC-eeEeccCccccchhHHHHHHh
Q 009060 391 LRVNVLFKHIQDMLS-GDTAVIAETGDSWF----NC---Q-K--LR-------LPENC-GYEFQMQYGSIGWSVGATLGY 451 (545)
Q Consensus 391 ~~~~~~~~~l~~~l~-~~~ivv~d~G~~~~----~~---~-~--~~-------~~~~~-~~~~~~~~g~mG~~l~aAiGa 451 (545)
+....+...|...+. +++.++.|.|-..+ .. . . ++ .|.+. .-....+.|+||+++|+|+|+
T Consensus 54 lg~~~~~~~l~~~~~~~~D~~v~~~gH~~y~~~~l~G~~~~~~~~r~~~g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~ 133 (621)
T 2o1s_A 54 LGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGIGI 133 (621)
T ss_dssp HTTHHHHHHHHHHSCTTTSEEEESSSTTCHHHHHTTTTGGGGGGTTSTTSCCSSCCTTTCTTCCSCCSSSSCHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCCCEEEEeCchHHHHHHHHhCCHhhhhcccccCCCCCCCCCCCCCCCccCCcccchHHHHHHHH
Confidence 555667777776776 66777777664211 00 0 0 11 11110 001224579999999999999
Q ss_pred hhhc----CCCeEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhh
Q 009060 452 AQAA----KDKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTI 498 (545)
Q Consensus 452 ala~----p~r~vv~i~GDGsf~--~~~~eL~ta~~~~lpi~ivV~NN~~~g~ 498 (545)
++|. ++++||+++|||+|+ |..++|.+|+++++|+++| +||++|++
T Consensus 134 AlA~~~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~v-vnnN~~~i 185 (621)
T 2o1s_A 134 AVAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLVI-LNDNEMSI 185 (621)
T ss_dssp HHHHHHHTSCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEE-EEECC---
T ss_pred HHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEE-EeCCCccc
Confidence 9985 789999999999999 5678999999999998655 57778998
No 40
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.11 E-value=4.5e-11 Score=131.53 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=73.2
Q ss_pred cCccccchhHHHHHHhhhhc--------------CCCeEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhh
Q 009060 436 MQYGSIGWSVGATLGYAQAA--------------KDKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIE 499 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~--------------p~r~vv~i~GDGsf~--~~~~eL~ta~~~~lpi~ivV~NN~~~g~~ 499 (545)
...|+||+++|+|+|+|+|. ++++|+|++|||+++ |+.++|.++.+++|+.+++|+||++|++.
T Consensus 124 ~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~ 203 (675)
T 1itz_A 124 VTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISID 203 (675)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETT
T ss_pred ECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCC
Confidence 46799999999999999996 689999999999999 78999999999999989999999999982
Q ss_pred hhhcCCCCCCCCCCCHHHHHHHcCCCC
Q 009060 500 VEIHDGPYNVIKNWDYTGLVNAIHNGE 526 (545)
Q Consensus 500 ~~~~~~~~~~l~~~d~~~lA~a~G~~~ 526 (545)
.... .....|+.+++++||+++
T Consensus 204 ~~~~-----~~~~~d~~~~~~a~G~~~ 225 (675)
T 1itz_A 204 GDTE-----IAFTEDVSTRFEALGWHT 225 (675)
T ss_dssp EEGG-----GTCCSCHHHHHHHTTCEE
T ss_pred CChh-----hhcChhHHHHHHhCCCEE
Confidence 1111 112679999999999963
No 41
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=99.10 E-value=4.2e-11 Score=131.86 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=72.8
Q ss_pred cCccccchhHHHHHHhhhhcC--------------CCeEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhh
Q 009060 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIE 499 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p--------------~r~vv~i~GDGsf~--~~~~eL~ta~~~~lpi~ivV~NN~~~g~~ 499 (545)
...|+||+++|.|+|+++|.+ +++|+|++|||+++ |+..+|.+|.++++|.+++|+||++|++.
T Consensus 113 ~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~ 192 (680)
T 1gpu_A 113 VTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITID 192 (680)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETT
T ss_pred eccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCceEe
Confidence 467999999999999999965 78999999999999 78899999999999999999999999982
Q ss_pred hhhcCCCCCCCCCCCHHHHHHHcCCCC
Q 009060 500 VEIHDGPYNVIKNWDYTGLVNAIHNGE 526 (545)
Q Consensus 500 ~~~~~~~~~~l~~~d~~~lA~a~G~~~ 526 (545)
... ......|+.+++++||+++
T Consensus 193 ~~~-----~~~~~~d~~~~~~a~G~~~ 214 (680)
T 1gpu_A 193 GAT-----SISFDEDVAKRYEAYGWEV 214 (680)
T ss_dssp EEG-----GGTCCCCHHHHHHHHTCEE
T ss_pred ccc-----ccccCccHHHHHHhcCCeE
Confidence 211 1112579999999999963
No 42
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.04 E-value=1.5e-10 Score=117.64 Aligned_cols=84 Identities=20% Similarity=0.182 Sum_probs=63.5
Q ss_pred cCccccchhHHHHHHhhhhcC----CCeEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCC
Q 009060 436 MQYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 509 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p----~r~vv~i~GDGsf~~~--~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~~~~~~~~ 509 (545)
.+.|+||+++|.|+|+++|.+ ++.||+++|||++.+. ..+|.+++.+++|+++||.|| +|++..... ..
T Consensus 137 ~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN-~~g~~t~~~----~~ 211 (365)
T 2ozl_A 137 GGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN-RYGMGTSVE----RA 211 (365)
T ss_dssp CCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEEC-SEETTEEHH----HH
T ss_pred CCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECC-CcccCCCcc----cc
Confidence 456899999999999999975 8899999999999985 447999999999988777666 699811000 00
Q ss_pred CCCCCHHHHHHHcCCCC
Q 009060 510 IKNWDYTGLVNAIHNGE 526 (545)
Q Consensus 510 l~~~d~~~lA~a~G~~~ 526 (545)
...+||.+ +++|+++
T Consensus 212 ~~~~~~~~--ra~g~p~ 226 (365)
T 2ozl_A 212 AASTDYYK--RGDFIPG 226 (365)
T ss_dssp CSCCCGGG--TTTTSCE
T ss_pred cCCCCHHH--HhCCCCE
Confidence 12356665 6777763
No 43
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=98.98 E-value=3.3e-10 Score=124.50 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=71.6
Q ss_pred cCccccchhHHHHHHhhhhcC--------------CCeEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhh
Q 009060 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIE 499 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p--------------~r~vv~i~GDGsf~~~--~~eL~ta~~~~lpi~ivV~NN~~~g~~ 499 (545)
...|+||+++|.|+|+|+|.+ +++|+|++|||++++. ..+|.+|.+++||.+|+|+||++|++.
T Consensus 113 ~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~~i~ 192 (673)
T 1r9j_A 113 VTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISID 192 (673)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSBCSS
T ss_pred eccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCCccc
Confidence 467999999999999999864 8899999999999964 677999999999999999999999982
Q ss_pred hhhcCCCCCCCCCCCHHHHHHHcCCCC
Q 009060 500 VEIHDGPYNVIKNWDYTGLVNAIHNGE 526 (545)
Q Consensus 500 ~~~~~~~~~~l~~~d~~~lA~a~G~~~ 526 (545)
++.......|+.+.+++||+++
T Consensus 193 -----~~~~~~~~~d~~~~~~a~G~~~ 214 (673)
T 1r9j_A 193 -----GSTSLSFTEQCHQKYVAMGFHV 214 (673)
T ss_dssp -----SBGGGTCCCCHHHHHHHTTCEE
T ss_pred -----cchhhccCHhHHHHHHHCCCeE
Confidence 2111112579999999999963
No 44
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=98.54 E-value=1.3e-08 Score=111.30 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=68.5
Q ss_pred cCccccchhHHHHHHhhhhcC-----------------CCeEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCch
Q 009060 436 MQYGSIGWSVGATLGYAQAAK-----------------DKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGY 496 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p-----------------~r~vv~i~GDGsf~~~--~~eL~ta~~~~lpi~ivV~NN~~~ 496 (545)
...|++|.++|.|+|+|+|.+ ++.|+|++|||+++.. ...+.+|.++++|-+|+|+||++|
T Consensus 130 ~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~ 209 (700)
T 3rim_A 130 ITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQI 209 (700)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE
T ss_pred ccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEECCCc
Confidence 456999999999999998743 6789999999999964 456999999999877888888889
Q ss_pred hhhhhhcCCCCCCCCCCCHHHHHHHcCCCC
Q 009060 497 TIEVEIHDGPYNVIKNWDYTGLVNAIHNGE 526 (545)
Q Consensus 497 g~~~~~~~~~~~~l~~~d~~~lA~a~G~~~ 526 (545)
++. ++.......|+.+.+++||+++
T Consensus 210 si~-----~~~~~~~~~~~~~~~~a~G~~~ 234 (700)
T 3rim_A 210 SIE-----DDTNIALCEDTAARYRAYGWHV 234 (700)
T ss_dssp ETT-----EEGGGTCCCCHHHHHHHHTCEE
T ss_pred ccc-----cchhhccchhHHHHHHHcCCeE
Confidence 882 1111113569999999999963
No 45
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=98.29 E-value=1.4e-07 Score=105.48 Aligned_cols=91 Identities=16% Similarity=0.124 Sum_probs=68.8
Q ss_pred eccCccccchhHHHHHHhhhhcC--------------CCeEEEEEcchhh--cccHHH-HHHHHHhCCC---eEEEEEeC
Q 009060 434 FQMQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSF--QVTAQE-ISTMIRCGQR---SIIFLINN 493 (545)
Q Consensus 434 ~~~~~g~mG~~l~aAiGaala~p--------------~r~vv~i~GDGsf--~~~~~e-L~ta~~~~lp---i~ivV~NN 493 (545)
...+-+.||.++|.|+|+++|.+ +..|++++|||+| .+..+| |.+|..+++| +++||.||
T Consensus 240 l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN 319 (868)
T 2yic_A 240 LTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNN 319 (868)
T ss_dssp ECCCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEEC
T ss_pred ecCCCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcC
Confidence 34566899999999999999853 3479999999998 578899 9999999998 99999999
Q ss_pred CchhhhhhhcCCCCCCCCCCCHHHHHHHcCCCCCce
Q 009060 494 GGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKC 529 (545)
Q Consensus 494 ~~~g~~~~~~~~~~~~l~~~d~~~lA~a~G~~~~~~ 529 (545)
+||+........ ...++.++|++||+++.+|
T Consensus 320 -~~g~st~~~~~~----s~~~~~~~a~a~G~p~~~V 350 (868)
T 2yic_A 320 -QIGFTTAPTDSR----SSEYCTDVAKMIGAPIFHV 350 (868)
T ss_dssp -SCBTTBCHHHHC----SSSSTTGGGGGGTCCEEEE
T ss_pred -CcccccCccccc----cccCHHHHHHhCCCcEEEE
Confidence 799821100000 1245677899999974433
No 46
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.25 E-value=1e-05 Score=94.07 Aligned_cols=134 Identities=14% Similarity=0.198 Sum_probs=104.5
Q ss_pred HHHHHHHHHhhCCCCCEEEecCCcccccc-cccccc----CCC---eeEecc--CccccchhHHH---------------
Q 009060 393 VNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLP----ENC---GYEFQM--QYGSIGWSVGA--------------- 447 (545)
Q Consensus 393 ~~~~~~~l~~~l~~~~ivv~d~G~~~~~~-~~~~~~----~~~---~~~~~~--~~g~mG~~l~a--------------- 447 (545)
+..+++.|.+.++++.+|+.|+|++..|. .+...| .+. .|..+. +.+.||+|+++
T Consensus 816 e~~~ik~l~ql~g~~~iian~tGc~siw~~~~~~~~~~~~~~g~~p~~~~Slf~~~a~mG~G~~~~~~~~~~~~~~~~~~ 895 (1231)
T 2c42_A 816 ETPYVRVITQLFGERMFIANATGCSSIWGASAPSMPYKTNRLGQGPAWGNSLFEDAAEYGFGMNMSMFARRTHLADLAAK 895 (1231)
T ss_dssp SHHHHHHHHHHHGGGEEEEECSSHHHHHHHBTTCCCBCCCTTSCCCEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCeEEEecCchHHHHHhhcccCCcccccCCCCcceecccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55778889999999999999999998875 332211 111 455442 66999999999
Q ss_pred ------------HH--------------------HhhhhcCC----------------CeEEEEEcch-hhcccHHHHHH
Q 009060 448 ------------TL--------------------GYAQAAKD----------------KRVIACIGDG-SFQVTAQEIST 478 (545)
Q Consensus 448 ------------Ai--------------------Gaala~p~----------------r~vv~i~GDG-sf~~~~~eL~t 478 (545)
|| |++++.|+ ++||++.||| +|+|+++||.|
T Consensus 896 ~~~~~~~~~~~~Ai~~w~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~Vv~i~GDG~~~~mg~~eL~t 975 (1231)
T 2c42_A 896 ALESDASGDVKEALQGWLAGKNDPIKSKEYGDKLKKLLAGQKDGLLGQIAAMSDLYTKKSVWIFGGDGWAYDIGYGGLDH 975 (1231)
T ss_dssp HHTTTCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTTCCSHHHHHHHTTGGGTSCCEEEEEEEHHHHHTTTHHHHHH
T ss_pred HhhccccHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCCchHHHHHhhhhhhccCCcEEEEeCcHHHHHcchHHHHH
Confidence 99 99997544 8899999999 99999999999
Q ss_pred HHHhCCCeEEEEEeCCchhhhhhhcC-----CC---C----CCCCCCCHHHHHHHcCCCC
Q 009060 479 MIRCGQRSIIFLINNGGYTIEVEIHD-----GP---Y----NVIKNWDYTGLVNAIHNGE 526 (545)
Q Consensus 479 a~~~~lpi~ivV~NN~~~g~~~~~~~-----~~---~----~~l~~~d~~~lA~a~G~~~ 526 (545)
++++++||++||+||+.||+-..+.. +. + .....+||.++|++||+.+
T Consensus 976 a~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a~G~~~ 1035 (1231)
T 2c42_A 976 VLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMTYGYVY 1035 (1231)
T ss_dssp HHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHTTSSSE
T ss_pred HHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHHCCCCE
Confidence 99999999999999999999221110 11 1 1235689999999999973
No 47
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=98.08 E-value=1.5e-06 Score=97.92 Aligned_cols=87 Identities=17% Similarity=0.127 Sum_probs=61.2
Q ss_pred cCccccchhHHHHHHhhhhcCCC---------eEEEEEcchhh--cccHHH-HHHHHHhCCC---eEEEEEeCCchhhhh
Q 009060 436 MQYGSIGWSVGATLGYAQAAKDK---------RVIACIGDGSF--QVTAQE-ISTMIRCGQR---SIIFLINNGGYTIEV 500 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~p~r---------~vv~i~GDGsf--~~~~~e-L~ta~~~~lp---i~ivV~NN~~~g~~~ 500 (545)
.+-+.+|.++|.|+|+++|.+.+ .||+++|||+| .....| |.++..+++| +++||.||+ |++..
T Consensus 318 ~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~-~~ist 396 (933)
T 2jgd_A 318 FNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQ-VGFTT 396 (933)
T ss_dssp CCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC------
T ss_pred ccCcccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCC-ccccC
Confidence 45578999999999999986543 79999999998 667888 9999999999 888888777 88722
Q ss_pred -hhcCCCCCCCCCCCHHHHHHHcCCCCC
Q 009060 501 -EIHDGPYNVIKNWDYTGLVNAIHNGEG 527 (545)
Q Consensus 501 -~~~~~~~~~l~~~d~~~lA~a~G~~~~ 527 (545)
.... .....++.++|++||++..
T Consensus 397 ~~~~~----~~~~~~~~~~a~a~g~p~~ 420 (933)
T 2jgd_A 397 SNPLD----ARSTPYCTDIGKMVQAPIF 420 (933)
T ss_dssp --------------CGGGGGGTTTCCEE
T ss_pred CCHHh----cccchhHHHHHHHcCCCEE
Confidence 1110 0123467788888888743
No 48
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=98.05 E-value=9.8e-07 Score=101.28 Aligned_cols=88 Identities=17% Similarity=0.118 Sum_probs=66.0
Q ss_pred ccCccccchhHHHHHHhhhhcC--------------CCeEEEEEcchhh--cccHHH-HHHHHHhCCC---eEEEEEeCC
Q 009060 435 QMQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSF--QVTAQE-ISTMIRCGQR---SIIFLINNG 494 (545)
Q Consensus 435 ~~~~g~mG~~l~aAiGaala~p--------------~r~vv~i~GDGsf--~~~~~e-L~ta~~~~lp---i~ivV~NN~ 494 (545)
..+.+.||.++|.|+|+++|.+ ++.+++++|||+| .....| |.+|..+++| +++||.||
T Consensus 486 ~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN- 564 (1113)
T 2xt6_A 486 TANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNN- 564 (1113)
T ss_dssp CCCCSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEEC-
T ss_pred cCCCccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeC-
Confidence 3456789999999999998853 3569999999998 678888 9999999998 99999988
Q ss_pred chhhhhhhcCCCCCCCCCCCHHHHHHHcCCCCC
Q 009060 495 GYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEG 527 (545)
Q Consensus 495 ~~g~~~~~~~~~~~~l~~~d~~~lA~a~G~~~~ 527 (545)
+|++........ ...++.++|++||++..
T Consensus 565 ~~gist~~~~~~----s~~~~~~~a~a~G~p~~ 593 (1113)
T 2xt6_A 565 QIGFTTAPTDSR----SSEYCTDVAKMIGAPIF 593 (1113)
T ss_dssp SCBTTBCHHHHC----SSSSTTGGGGGGTCCEE
T ss_pred CcccccCccccc----cccCHHHHHHhcCCcEE
Confidence 788811100000 12345678899999744
No 49
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=98.00 E-value=5.5e-06 Score=92.92 Aligned_cols=85 Identities=20% Similarity=0.239 Sum_probs=68.1
Q ss_pred cCccccchhHHHHHHhhhhc-----------CCCeEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhhhhh
Q 009060 436 MQYGSIGWSVGATLGYAQAA-----------KDKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIEVEI 502 (545)
Q Consensus 436 ~~~g~mG~~l~aAiGaala~-----------p~r~vv~i~GDGsf~--~~~~eL~ta~~~~lpi~ivV~NN~~~g~~~~~ 502 (545)
...|+||.+++.|+|++++. ++++|+|++|||++. ++...|..|.+++++-+|+|+||+++.+
T Consensus 189 ~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si---- 264 (886)
T 2qtc_A 189 FPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRL---- 264 (886)
T ss_dssp CCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCS----
T ss_pred ccccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCccc----
Confidence 45699999999999999873 478999999999999 6778899999999987778888888887
Q ss_pred cCCCCCC--CCCCCHHHHHHHcCCC
Q 009060 503 HDGPYNV--IKNWDYTGLVNAIHNG 525 (545)
Q Consensus 503 ~~~~~~~--l~~~d~~~lA~a~G~~ 525 (545)
.++... ...-++.++.+++|++
T Consensus 265 -~~~v~~~~~~~~~l~~~~~~~G~~ 288 (886)
T 2qtc_A 265 -DGPVTGNGKIINELEGIFEGAGWN 288 (886)
T ss_dssp -SSBSCTTSCHHHHHHHHHHHTTCE
T ss_pred -CCCccccccccHHHHHHHHhCCCC
Confidence 222111 1124788999999985
No 50
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=95.82 E-value=0.46 Score=46.96 Aligned_cols=115 Identities=18% Similarity=0.108 Sum_probs=79.0
Q ss_pred eEEe-cCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHHHHHHH--hH---h----cCCcEEEEeCCCCCcccCCCcc
Q 009060 67 NLVG-CCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAG--AY---S----ENLPVICIVGGPNSNDYGTNRI 135 (545)
Q Consensus 67 ~~i~-~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~l~~--A~---~----~~~Pllvi~g~~~~~~~~~~~~ 135 (545)
+++. ...|++++.+|.|+|.. | ..++..|.++.+.-+...+.+ |+ . .++|++++.. +.. .+.+ .
T Consensus 52 r~~~~gIaE~~~v~~a~G~A~~-G~~p~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~--~~~~-g 126 (324)
T 1umd_B 52 RVMDTPLSEAAIVGAALGMAAH-GLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGG--GVRG-G 126 (324)
T ss_dssp TEEECCSCHHHHHHHHHHHHHH-TCEEEEECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECS--SSSC-G
T ss_pred cEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCC--CCCC-C
Confidence 5665 49999999999999887 8 566656788888777777764 32 2 6899998764 221 1122 3
Q ss_pred cccccCCCChHHHHHHhhhcee-EEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCCCC
Q 009060 136 LHHTIGLPDFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPG 196 (545)
Q Consensus 136 ~~~~~~~~~~~d~~~~~~~~~k-~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv~~ 196 (545)
.||.. + | ..+++.+.. ....+.++++...+++.|++ .++||+|..|..+..
T Consensus 127 ~~hs~-~----~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~p~~l~~ 178 (324)
T 1umd_B 127 HHHSQ-S----P-EAHFVHTAGLKVVAVSTPYDAKGLLKAAIR----DEDPVVFLEPKRLYR 178 (324)
T ss_dssp GGSSC-C----C-HHHHHTSTTCEEEECCSHHHHHHHHHHHHH----CSSCEEEEEEGGGSS
T ss_pred Cccch-h----H-HHHHhcCCCCEEEEeCCHHHHHHHHHHHHh----cCCCEEEEechHhcC
Confidence 34432 1 1 266776644 34677788888888888885 579999987776543
No 51
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=95.51 E-value=0.02 Score=57.23 Aligned_cols=156 Identities=15% Similarity=0.065 Sum_probs=95.3
Q ss_pred CccHHHHHHHHHHHcC--CCEEEecCCCCh-----HHHHHhhhcCC-CCeEEec-CchhHHHHHHhHHhhhcC-ceEEEE
Q 009060 26 VGTLGRHLARRLVEIG--AKDVFSVPGDFN-----LTLLDHLIAEP-ELNLVGC-CNELNAGYAADGYARSRG-VGACVV 95 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~G--V~~vFg~pG~~~-----~~l~~al~~~~-~i~~i~~-~hE~~A~~~A~gyar~tg-~gv~~~ 95 (545)
+++..+++.+.|.+.. -+.|+++..+.. ...++.+.+.- .-+++.+ ..|++++.+|.|+|.. | ..++..
T Consensus 4 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gisE~~~~~~a~G~A~~-G~rp~~~~ 82 (338)
T 1qs0_B 4 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAY-GLRPVVEI 82 (338)
T ss_dssp ECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHH-TCEEEEEC
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEEccccHHHHHHHHHHHHhC-CCEEEEEe
Confidence 4556666666555442 234554433211 11223332211 1378875 7999999999999887 7 566656
Q ss_pred cCCcchHHHHHHHHH-h----Hh----cCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhcee-EEEEeCCh
Q 009060 96 TFTVGGLSVLNAIAG-A----YS----ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITC-SQAVVNNL 165 (545)
Q Consensus 96 t~GpG~~n~~~~l~~-A----~~----~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k-~~~~v~~~ 165 (545)
|.++++.-+...+.+ + |. .+.|++++..... . .+...||++. ...+++.+-. ....+.++
T Consensus 83 t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~---~~G~th~s~~------d~~~l~~iP~l~V~~Psd~ 152 (338)
T 1qs0_B 83 QFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-G---IYGGQTHSQS------PEAMFTQVCGLRTVMPSNP 152 (338)
T ss_dssp SCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-S---SSCCSSSSCC------CHHHHTTSTTCEEECCCSH
T ss_pred ccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-C---CCCccccccc------HHHHHhcCCCCEEEeeCCH
Confidence 889988778888763 3 22 3589998863322 1 1113455432 2456666633 33566778
Q ss_pred hhHHHHHHHHHHHhhhCCCcEEEEeCCCCCC
Q 009060 166 GDAHELIDTAISTALKESKPVYISISCNLPG 196 (545)
Q Consensus 166 ~~~~~~l~~A~~~a~~~~GPV~l~iP~dv~~ 196 (545)
+++..++..|++. ++||+|..|..+..
T Consensus 153 ~e~~~~l~~A~~~----~~Pv~i~~p~~l~r 179 (338)
T 1qs0_B 153 YDAKGLLIASIEC----DDPVIFLEPKRLYN 179 (338)
T ss_dssp HHHHHHHHHHHHS----SSCEEEEEEGGGSS
T ss_pred HHHHHHHHHHHhc----CCcEEEEEchHhhc
Confidence 8888888888763 79999988866543
No 52
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=95.45 E-value=0.011 Score=65.38 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=58.1
Q ss_pred CccccchhHHHHHHhhhhcCCCeEEEEEcchhhccc-HHHHHHH----HHhCCCeEEEEEeCCchhhhhhhcCCCCC--C
Q 009060 437 QYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT-AQEISTM----IRCGQRSIIFLINNGGYTIEVEIHDGPYN--V 509 (545)
Q Consensus 437 ~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~~-~~eL~ta----~~~~lpi~ivV~NN~~~g~~~~~~~~~~~--~ 509 (545)
..|++|+|++.|+|+++.+|+..|+|++|||...=. +...|-+ ..+++.-+++|++++++.+ +++-. .
T Consensus 173 ~tG~LGqGls~AvG~A~~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~~i-----~g~t~l~~ 247 (845)
T 3ahc_A 173 EGGELGYALSHAYGAVMNNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKI-----ANPTILAR 247 (845)
T ss_dssp CCSSTTCHHHHHHHHHTTCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECSBSS-----SSBCHHHH
T ss_pred CCCCccchHhHHhhhhhcCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECCCCcC-----CCCccccc
Confidence 569999999999999999999999999999993321 1122322 2456777888888888988 22110 1
Q ss_pred CCCCCHHHHHHHcCCC
Q 009060 510 IKNWDYTGLVNAIHNG 525 (545)
Q Consensus 510 l~~~d~~~lA~a~G~~ 525 (545)
...-|+.+.-++||.+
T Consensus 248 ~~~e~l~~rf~a~Gw~ 263 (845)
T 3ahc_A 248 ISDEELHDFFRGMGYH 263 (845)
T ss_dssp SCHHHHHHHHHHTTEE
T ss_pred cCcHHHHHHHHHCCCE
Confidence 1223566677777764
No 53
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=95.32 E-value=0.47 Score=46.86 Aligned_cols=116 Identities=18% Similarity=0.053 Sum_probs=79.1
Q ss_pred CeEEe-cCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHHHHHHH--hH---h----cCCcEEEEeCCCCCcccCCCc
Q 009060 66 LNLVG-CCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAG--AY---S----ENLPVICIVGGPNSNDYGTNR 134 (545)
Q Consensus 66 i~~i~-~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~l~~--A~---~----~~~Pllvi~g~~~~~~~~~~~ 134 (545)
-+++. ...|++++.+|.|+|.. | ..++..|.++.+.-+...+.+ |+ . .++|++++.. +.. .+.+
T Consensus 50 ~r~~~~gIaE~~~v~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~--~~~~- 124 (324)
T 1w85_B 50 DRVFDTPLAESGIGGLAIGLALQ-GFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSP-FGG--GVHT- 124 (324)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECS--SSCC-
T ss_pred CcEEEcchhHHHHHHHHHHHHhC-CCEEEEEecchhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccC--CCCC-
Confidence 36776 45999999999999976 8 566655888888777777764 32 2 7899998853 211 1111
Q ss_pred ccccccCCCChHHHHHHhhhcee-EEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCCCC
Q 009060 135 ILHHTIGLPDFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPG 196 (545)
Q Consensus 135 ~~~~~~~~~~~~d~~~~~~~~~k-~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv~~ 196 (545)
..||.. + | ..+++.+.. ....+.+++++..++..|++ .++||+|..|..+..
T Consensus 125 g~~hs~-~----~-~a~~~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~i~~p~~l~r 177 (324)
T 1w85_B 125 PELHSD-S----L-EGLVAQQPGLKVVIPSTPYDAKGLLISAIR----DNDPVIFLEHLKLYR 177 (324)
T ss_dssp CTTSSC-C----C-HHHHTTSTTCEEECCSSHHHHHHHHHHHHH----SSSCEEEEEETTTSS
T ss_pred CCcccc-c----H-HHHHccCCCCEEEeeCCHHHHHHHHHHHHH----cCCCEEEEechHhcC
Confidence 223322 1 1 267777654 34666778888888888875 579999988877643
No 54
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=95.27 E-value=0.064 Score=53.62 Aligned_cols=157 Identities=14% Similarity=0.025 Sum_probs=95.9
Q ss_pred CCccHHHHHHHHHHHcC--CCEEEecCCCCh----HHHHHhhhcCC-CCeEEecC-chhHHHHHHhHHhhhcC-ceEEEE
Q 009060 25 SVGTLGRHLARRLVEIG--AKDVFSVPGDFN----LTLLDHLIAEP-ELNLVGCC-NELNAGYAADGYARSRG-VGACVV 95 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~G--V~~vFg~pG~~~----~~l~~al~~~~-~i~~i~~~-hE~~A~~~A~gyar~tg-~gv~~~ 95 (545)
..++..+++.+.|.+.. -+.|+++..+.. ....+.+.+.- .-+++.+- .|++++.+|.|+|.. | ..++..
T Consensus 19 ~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~-G~rp~~~~ 97 (342)
T 2bfd_B 19 QKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVT-GATAIAEI 97 (342)
T ss_dssp EEECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHT-TCCEEEEC
T ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEcCccCCCcccchHHHHHHHhCCCeEEEcCcCHHHHHHHHHHHHHC-CCeeEEEe
Confidence 34566666666555543 233444432211 11222332211 23677764 999999999999987 7 666656
Q ss_pred cCCcchHHHHHHHHH-h----Hhc----CC-cEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhcee-EEEEeCC
Q 009060 96 TFTVGGLSVLNAIAG-A----YSE----NL-PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITC-SQAVVNN 164 (545)
Q Consensus 96 t~GpG~~n~~~~l~~-A----~~~----~~-Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k-~~~~v~~ 164 (545)
|.++.+.-+...+.+ + +.. .+ ||+++...... +.+ ..||.+. | ..+++.+-. ....+.+
T Consensus 98 tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~---~~G-~th~~~~--d----~~~l~~iP~l~V~~Psd 167 (342)
T 2bfd_B 98 QFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV---GHG-ALYHSQS--P----EAFFAHCPGIKVVIPRS 167 (342)
T ss_dssp SSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC---SSC-GGGSSCC--C----HHHHHTSTTCEEECCSS
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC---CCC-cchhhHh--H----HHHHhcCCCcEEEeeCC
Confidence 899998877787763 3 221 33 99988553221 222 3465442 2 456676643 3466778
Q ss_pred hhhHHHHHHHHHHHhhhCCCcEEEEeCCCCCC
Q 009060 165 LGDAHELIDTAISTALKESKPVYISISCNLPG 196 (545)
Q Consensus 165 ~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv~~ 196 (545)
+++...+++.|++ .++||+|..|..+..
T Consensus 168 ~~e~~~~l~~a~~----~~~Pv~i~~p~~l~r 195 (342)
T 2bfd_B 168 PFQAKGLLLSCIE----DKNPCIFFEPKILYR 195 (342)
T ss_dssp HHHHHHHHHHHHH----SSSCEEEEEEGGGTT
T ss_pred HHHHHHHHHHHHh----cCCcEEEEecchhcC
Confidence 8888888888876 379999988866543
No 55
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=94.92 E-value=0.087 Score=52.61 Aligned_cols=113 Identities=15% Similarity=0.134 Sum_probs=78.7
Q ss_pred CeEEec-CchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHHHHHHHhHh---------cCCcEEEEeCCCCCcccCCCc
Q 009060 66 LNLVGC-CNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYS---------ENLPVICIVGGPNSNDYGTNR 134 (545)
Q Consensus 66 i~~i~~-~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~l~~A~~---------~~~Pllvi~g~~~~~~~~~~~ 134 (545)
-+++.+ ..|++++.+|.|+|.. | ..++..|.+..+.-++..+..... .+.||+++... . ..+.+.
T Consensus 62 ~r~~d~gIaE~~~v~~a~G~A~~-G~rp~~~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G--~~g~~G 137 (341)
T 2ozl_B 62 KRIIDTPISEMGFAGIAVGAAMA-GLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-G--ASAGVA 137 (341)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-S--CCSSCC
T ss_pred CcEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-c--CCCCCC
Confidence 478877 6999999999999986 7 666666888888778888875332 78998887763 2 222222
Q ss_pred ccccccCCCChHHHHHHhhhceeE-EEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 135 ILHHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 135 ~~~~~~~~~~~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
..| + + ..+ .+++.+..+ ...+.+++++..+++.|++ .++||+|..|..
T Consensus 138 ~tH-s-~---~~e--a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~i~~~~~ 186 (341)
T 2ozl_B 138 AQH-S-Q---CFA--AWYGHCPGLKVVSPWNSEDAKGLIKSAIR----DNNPVVVLENEL 186 (341)
T ss_dssp GGG-C-C---CCH--HHHHTSTTCEEECCCSHHHHHHHHHHHHH----SSSCEEEEECHH
T ss_pred cch-h-h---HHH--HHhccCCCCEEEEeCCHHHHHHHHHHHHh----cCCCEEEEEChh
Confidence 233 1 2 233 567766443 3556678888888888776 379999999854
No 56
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=94.83 E-value=1.8 Score=46.70 Aligned_cols=151 Identities=15% Similarity=0.076 Sum_probs=91.3
Q ss_pred HHHHHHHHHHcCCCEEEecCCCChHHHHHhhhc-CCCCeEEe-cCchhHHHHHHhHHhhhcCceEEEEcCCcchHHHHHH
Q 009060 30 GRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA-EPELNLVG-CCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNA 107 (545)
Q Consensus 30 a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~-~~~i~~i~-~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~~~ 107 (545)
+++|.+.+++ .=+.+.+-+.-......+.+.+ .++ |++. ...|++++.+|.|.|..-..-++..|.++.+.-+...
T Consensus 320 ~~~L~~l~~~-d~~vv~~~aD~~~~~~~~~~~~~~p~-R~~d~gIaE~~~v~~a~G~A~~G~~~~~~~~f~~Fl~~a~dq 397 (616)
T 3mos_A 320 GQALAKLGHA-SDRIIALDGDTKNSTFSEIFKKEHPD-RFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQ 397 (616)
T ss_dssp HHHHHHHHHH-CTTEEEEESSCHHHHSHHHHHHHCGG-GEEECCSCHHHHHHHHHHHHGGGCCEEEEEEEGGGGGGGHHH
T ss_pred HHHHHHHHhh-CCCEEEEeCCcCCCcchhhHHHhCCC-CeEEcCccHHHHHHHHHHHHHcCCCCEEEEehHHHHHHHHHH
Confidence 3444444433 2344444333222223344432 233 6775 5699999999999888643556666889999999999
Q ss_pred HHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEE-EEeCChhhHHHHHHHHHHHhhhCCCcE
Q 009060 108 IAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALKESKPV 186 (545)
Q Consensus 108 l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~~~a~~~~GPV 186 (545)
|..+...+.|++++...... ..|.+...||.+ ....+++.+-... ..+.++.++..+++ .|...+||+
T Consensus 398 i~~~a~~~~~v~~v~~~~g~-~~G~dG~tH~~~------ed~a~l~~iP~l~V~~P~d~~e~~~~l~----~a~~~~gp~ 466 (616)
T 3mos_A 398 IRMAAISESNINLCGSHCGV-SIGEDGPSQMAL------EDLAMFRSVPTSTVFYPSDGVATEKAVE----LAANTKGIC 466 (616)
T ss_dssp HHHHHHTTCCEEEEEESBSG-GGCTTCGGGCBS------SHHHHHHTSTTEEEECCCSHHHHHHHHH----HHHTCCSEE
T ss_pred HHHHHHhCCCeEEEEECCCc-cccCCCCcccCH------HHHHHhcCCCCCEEEecCCHHHHHHHHH----HHHhcCCCE
Confidence 99888899998877433222 123222234332 2467788775432 44455665655554 444458999
Q ss_pred EEEeCCC
Q 009060 187 YISISCN 193 (545)
Q Consensus 187 ~l~iP~d 193 (545)
+|..|.+
T Consensus 467 ~ir~~r~ 473 (616)
T 3mos_A 467 FIRTSRP 473 (616)
T ss_dssp EEECCSS
T ss_pred EEEEeCC
Confidence 9999875
No 57
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=93.98 E-value=0.14 Score=51.73 Aligned_cols=157 Identities=15% Similarity=0.040 Sum_probs=89.4
Q ss_pred CCccHHHHHHHHHHHcC--CCEEEecCCCCh-----HHHHHhhhcCC-CCeEEe-cCchhHHHHHHhHHhhhcC-ceEEE
Q 009060 25 SVGTLGRHLARRLVEIG--AKDVFSVPGDFN-----LTLLDHLIAEP-ELNLVG-CCNELNAGYAADGYARSRG-VGACV 94 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~G--V~~vFg~pG~~~-----~~l~~al~~~~-~i~~i~-~~hE~~A~~~A~gyar~tg-~gv~~ 94 (545)
..++..+++.+.|.+.. -..|+++..+.. ...++.+.+.- .-+++. ...|++++.+|.|+|.. | ..++.
T Consensus 49 ~~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~-G~rpv~~ 127 (369)
T 1ik6_A 49 MMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAMA-GLKPVAE 127 (369)
T ss_dssp EEECHHHHHHHHHHHHHHHCTTEEEEEC---------CTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHT-TCEEEEE
T ss_pred CcccHHHHHHHHHHHHHccCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECcccHHHHHHHHHHHHHC-CCeeEEE
Confidence 44567777776555543 234554433221 01123332211 246776 45999999999999987 7 66665
Q ss_pred EcCCcchHHHHHHHHH-hHhc--------CCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeE-EEEeCC
Q 009060 95 VTFTVGGLSVLNAIAG-AYSE--------NLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QAVVNN 164 (545)
Q Consensus 95 ~t~GpG~~n~~~~l~~-A~~~--------~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~-~~~v~~ 164 (545)
.|.++.+.-++..|.. +... +.||+++...... .+ + ..||.. .+ ..+++.+..+ ...+.+
T Consensus 128 ~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~--~g-~-g~~hs~-----~~-~a~l~~iPnl~V~~Psd 197 (369)
T 1ik6_A 128 IQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSG--TR-G-GLYHSN-----SP-EAIFVHTPGLVVVMPST 197 (369)
T ss_dssp CCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC--------------------H-HHHHHTCTTCEEECCCS
T ss_pred ecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCC--CC-C-Cccccc-----cH-HHHHcCCCCcEEEecCC
Confidence 6788887777777755 3222 8999877653331 12 2 223322 23 4677776443 356667
Q ss_pred hhhHHHHHHHHHHHhhhCCCcEEEEeCCCCCC
Q 009060 165 LGDAHELIDTAISTALKESKPVYISISCNLPG 196 (545)
Q Consensus 165 ~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv~~ 196 (545)
++++..+++.|++ .++||+|..|..+..
T Consensus 198 ~~e~~~ll~~A~~----~~~Pv~i~~p~~l~r 225 (369)
T 1ik6_A 198 PYNAKGLLKAAIR----GDDPVVFLEPKILYR 225 (369)
T ss_dssp HHHHHHHHHHHHH----SSSCEEEEEEGGGSS
T ss_pred HHHHHHHHHHHHh----CCCCEEEEEehhhhc
Confidence 8888888888776 579999998877643
No 58
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=93.34 E-value=0.78 Score=49.64 Aligned_cols=152 Identities=12% Similarity=0.158 Sum_probs=94.6
Q ss_pred CccHHHHHHHHHHHcC--CCEEEec----CCCC-hHHHHHhhhcCCCCeEEe-cCchhHHHHHHhHHhhhcC-ceEEEEc
Q 009060 26 VGTLGRHLARRLVEIG--AKDVFSV----PGDF-NLTLLDHLIAEPELNLVG-CCNELNAGYAADGYARSRG-VGACVVT 96 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~G--V~~vFg~----pG~~-~~~l~~al~~~~~i~~i~-~~hE~~A~~~A~gyar~tg-~gv~~~t 96 (545)
.+++.+++.+.|.+.. -+.|+.+ +++. ...+.+.. + =+++. ...|++++.+|.|+|.. | ..++.+
T Consensus 318 ~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~~~---~-~r~~~~gIaE~~~~~~a~G~A~~-G~rp~~~~- 391 (621)
T 2o1s_A 318 LPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRKF---P-DRYFDVAIAEQHAVTFAAGLAIG-GYKPIVAI- 391 (621)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHC---T-TTEEECCSCHHHHHHHHHHHHHT-TCEEEEEE-
T ss_pred hHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHHhC---C-CceEecCcCHHHHHHHHHHHHHC-CCEEEEEe-
Confidence 4566666666555443 2345554 4432 23333322 3 36776 56999999999999886 8 555444
Q ss_pred CCcchHHHHHHHH-HhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhcee-EEEEeCChhhHHHHHHH
Q 009060 97 FTVGGLSVLNAIA-GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITC-SQAVVNNLGDAHELIDT 174 (545)
Q Consensus 97 ~GpG~~n~~~~l~-~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k-~~~~v~~~~~~~~~l~~ 174 (545)
.++.+.-+..-+. .+...+.|++++...... .+.+...|+.. ....+++.+-. ....+.++.++..++..
T Consensus 392 ~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~--~g~~G~tH~~~------~d~~~~~~iP~l~v~~P~d~~e~~~~l~~ 463 (621)
T 2o1s_A 392 YSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGI--VGADGQTHQGA------FDLSYLRCIPEMVIMTPSDENECRQMLYT 463 (621)
T ss_dssp ETTGGGGGHHHHHHTTTTTTCCCEEEEESCBC--CCTTCGGGCBC------SHHHHTTTSTTCEEECCSSHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHhcCCCEEEEEECCcc--CCCCCCccCch------HHHHHHhcCCCCEEEecCCHHHHHHHHHH
Confidence 7777766665544 466789999888743322 23222344322 23567777633 33566677888888877
Q ss_pred HHHHhhhCCCcEEEEeCCCC
Q 009060 175 AISTALKESKPVYISISCNL 194 (545)
Q Consensus 175 A~~~a~~~~GPV~l~iP~dv 194 (545)
|++.+ ++||+|..|...
T Consensus 464 a~~~~---~~Pv~i~~~r~~ 480 (621)
T 2o1s_A 464 GYHYN---DGPSAVRYPRGN 480 (621)
T ss_dssp HHHCC---SSCEEEECCSSB
T ss_pred HHHcC---CCCEEEEeCCCC
Confidence 77643 799999999654
No 59
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=93.29 E-value=0.8 Score=49.99 Aligned_cols=117 Identities=13% Similarity=0.070 Sum_probs=77.4
Q ss_pred CeEEe-cCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCC
Q 009060 66 LNLVG-CCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 143 (545)
Q Consensus 66 i~~i~-~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~ 143 (545)
=|++. ...|++++.+|.|+|...| ..++ .|..+-+.-+..+|..+-..+.|++++....... .|.+...|+.
T Consensus 402 ~R~id~GIaE~~~v~~a~GlA~~gG~~P~~-~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~~-~G~dG~tHq~---- 475 (669)
T 2r8o_A 402 GNYIHYGVREFGMTAIANGISLHGGFLPYT-STFLMFVEYARNAVRMAALMKQRQVMVYTHDSIG-LGEDGPTHQP---- 475 (669)
T ss_dssp CSEEECCSCHHHHHHHHHHHHHHSSCEEEE-EEEGGGGGTTHHHHHHHHHTTCCCEEEEECCSGG-GCTTCTTTCC----
T ss_pred CCeeecchhHHHHHHHHHHHHHcCCCeEEE-eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcC-cCCCCCccCC----
Confidence 46766 5699999999999998867 5555 4677776677788888888999999886322221 2222223432
Q ss_pred ChHHHHHHhhhcee-EEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 144 DFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 144 ~~~d~~~~~~~~~k-~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
..++.+++.+-. ....+.++.++..+++.|++. ..+||+|.+|..
T Consensus 476 --~edla~lr~iP~l~V~~Pad~~E~~~~l~~a~~~---~~~Pv~i~~~r~ 521 (669)
T 2r8o_A 476 --VEQVASLRVTPNMSTWRPCDQVESAVAWKYGVER---QDGPTALILSRQ 521 (669)
T ss_dssp --SSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHC---SSSCEEEECCSS
T ss_pred --HHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHHh---CCCcEEEEeCCC
Confidence 234677777632 335555666666666655542 269999998864
No 60
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=92.10 E-value=0.86 Score=49.24 Aligned_cols=115 Identities=14% Similarity=0.051 Sum_probs=75.7
Q ss_pred eEE-ecCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCC
Q 009060 67 NLV-GCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (545)
Q Consensus 67 ~~i-~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~ 144 (545)
|++ ...-|++++.+|.|.|...| ..++.+ ..+=+.-+...|..+-..+.||+++....... .|.+...||.+
T Consensus 383 R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~~-f~~F~~~~~~~ir~~a~~~~pv~~~~t~~g~g-~G~dG~THq~~---- 456 (632)
T 3l84_A 383 KNIHFGIREHAMAAINNAFARYGIFLPFSAT-FFIFSEYLKPAARIAALMKIKHFFIFTHDSIG-VGEDGPTHQPI---- 456 (632)
T ss_dssp SEEECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCGGGSCS----
T ss_pred CeEEeCccHHHHHHHHHHHHHcCCCEEEEEe-cHHHHHHHHHHHHHHhccCCCEEEEEECCCcC-CCCCCCCCCCH----
Confidence 555 46699999999999998867 444443 55555666777777777899999885222111 23222345433
Q ss_pred hHHHHHHhhhceeE-EEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 145 FTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 145 ~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
.++.+++.+-.. ...+.++.++..++..|++ .++||+|.+|..
T Consensus 457 --ed~a~lr~iP~l~V~~P~d~~e~~~~l~~A~~----~~~Pv~ir~~r~ 500 (632)
T 3l84_A 457 --EQLSTFRAMPNFLTFRPADGVENVKAWQIALN----ADIPSAFVLSRQ 500 (632)
T ss_dssp --SHHHHHHHSSSCEEECCSSHHHHHHHHHHHHH----CSSCEEEECCSS
T ss_pred --hHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh----CCCCEEEEEcCC
Confidence 246788887542 3455566666666666665 689999999864
No 61
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=91.91 E-value=1 Score=48.79 Aligned_cols=151 Identities=13% Similarity=0.119 Sum_probs=94.7
Q ss_pred CccHHHHHHHHHHHcC--CCEEEec----CCC-ChHHHHHhhhcCCCCeEEe-cCchhHHHHHHhHHhhhcC-ceEEEEc
Q 009060 26 VGTLGRHLARRLVEIG--AKDVFSV----PGD-FNLTLLDHLIAEPELNLVG-CCNELNAGYAADGYARSRG-VGACVVT 96 (545)
Q Consensus 26 ~~~~a~~i~~~L~~~G--V~~vFg~----pG~-~~~~l~~al~~~~~i~~i~-~~hE~~A~~~A~gyar~tg-~gv~~~t 96 (545)
.+++.+++.+.|.+.. -+.|+.+ +++ ....|.+.. + =|++. ...|++++.+|.|.|.. | ..++.+
T Consensus 321 ~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~~---~-~r~~~~gIaE~~~~~~a~G~A~~-G~rp~~~~- 394 (629)
T 2o1x_A 321 AYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVH---P-HRYLDVGIAEEVAVTTAAGMALQ-GMRPVVAI- 394 (629)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHC---G-GGEEECCSCHHHHHHHHHHHHHT-TCEEEEEE-
T ss_pred hHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHhc---C-cceEeccccHHHHHHHHHHHHHc-CCEEEEEe-
Confidence 5667777776555543 2346655 443 333344332 2 36776 56999999999998886 8 555443
Q ss_pred CCcchHHHHHHHHH-hHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeE-EEEeCChhhHHHHHHH
Q 009060 97 FTVGGLSVLNAIAG-AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDT 174 (545)
Q Consensus 97 ~GpG~~n~~~~l~~-A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~ 174 (545)
..+.+.-+...+.. +...+.|++++...... .+.+...|+.. .+..+++.+..+ ...+.++.++..++..
T Consensus 395 ~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~--~g~dG~tH~~~------~d~a~~r~iP~l~v~~P~d~~e~~~~~~~ 466 (629)
T 2o1x_A 395 YSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGI--VGADGATHNGV------FDLSFLRSIPGVRIGLPKDAAELRGMLKY 466 (629)
T ss_dssp EHHHHGGGHHHHHHTTTTTTCCCEEEEESBBC--CCTTCTTTCBC------SHHHHTTTSTTCEEECCSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCCCEEEEEECCcc--CCCCCcccCcc------HHHHHHHccCCcEEEecCCHHHHHHHHHH
Confidence 67776655555444 66789999888743322 23222234322 246778776443 3556677788888877
Q ss_pred HHHHhhhCCCcEEEEeCCCC
Q 009060 175 AISTALKESKPVYISISCNL 194 (545)
Q Consensus 175 A~~~a~~~~GPV~l~iP~dv 194 (545)
|++. ++||+|.+|...
T Consensus 467 a~~~----~~Pv~i~~~r~~ 482 (629)
T 2o1x_A 467 AQTH----DGPFAIRYPRGN 482 (629)
T ss_dssp HHHS----SSCEEEECCSSB
T ss_pred HHhC----CCCEEEEecCCC
Confidence 7765 799999999653
No 62
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=91.40 E-value=0.97 Score=49.17 Aligned_cols=117 Identities=15% Similarity=0.089 Sum_probs=76.4
Q ss_pred CeEEec-CchhHHHHHHhHHhhhcCceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEe-CCCCCcccCCCcccccccCCC
Q 009060 66 LNLVGC-CNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIV-GGPNSNDYGTNRILHHTIGLP 143 (545)
Q Consensus 66 i~~i~~-~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~-g~~~~~~~~~~~~~~~~~~~~ 143 (545)
=|++.+ ..|++++.+|.|+|..-|.-.++.|..+.+.=+..+|..+-..+.|++++. .+.-. .|.+...|+.
T Consensus 397 ~R~i~~gIaE~~~~~~a~GlA~~Gg~~P~~~t~~~F~~~~~~air~~a~~~lpvv~~~t~~g~g--~G~dG~tHq~---- 470 (651)
T 2e6k_A 397 GRYLHFGVREHAMGAILNGLNLHGGYRAYGGTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIA--LGEDGPTHQP---- 470 (651)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGGGGSHHHHHHHHHHTCCCEEEEECCSGG--GCTTCTTTCC----
T ss_pred CceEecCcCHHHHHHHHHHHHHcCCCEEEEEeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc--cCCCcCcccc----
Confidence 467764 599999999999998755333444566666666777877888899998884 33221 2322223422
Q ss_pred ChHHHHHHhhhcee-EEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 144 DFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 144 ~~~d~~~~~~~~~k-~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
..++.+++.+-. ....+.++.++..++..|++.. ++||+|.+|..
T Consensus 471 --~edla~lr~iP~l~V~~Pad~~E~~~~l~~A~~~~---~~Pv~i~~~r~ 516 (651)
T 2e6k_A 471 --VEHLMSLRAMPNLFVIRPADAYETFYAWLVALRRK---EGPTALVLTRQ 516 (651)
T ss_dssp --SSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCC---SSCEEEECCSS
T ss_pred --HHHHHHhcCCCCcEEEecCCHHHHHHHHHHHHHcC---CCCEEEEEeCC
Confidence 234677777633 3455666777777766666532 69999999865
No 63
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=90.82 E-value=1.7 Score=47.14 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=74.0
Q ss_pred eEEe-cCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCC
Q 009060 67 NLVG-CCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (545)
Q Consensus 67 ~~i~-~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~ 144 (545)
|++. ..-|++++.+|.|+|...| ..++. |..+-+.-+...+..+-..+.|++++....... .|.+...||.+
T Consensus 404 R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~-tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g-~G~dG~THq~~---- 477 (663)
T 3kom_A 404 NYLSYGVREFGMAAIMNGLSLYGGIKPYGG-TFLVFSDYSRNAIRMSALMKQPVVHVMSHDSIG-LGEDGPTHQPI---- 477 (663)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGHHHHHHHHHHHHHTTCCCEEEEECCSGG-GCTTCTTTCCS----
T ss_pred CeEecCccHHHHHHHHHHHHHcCCCEEEEE-ehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccc-cCCCCCCcCCH----
Confidence 6776 4899999999999998767 55554 466766667777877778899999885221111 22222334322
Q ss_pred hHHHHHHhhhceeE-EEEeCChhhHHHHHHHHHHHhhh-CCCcEEEEeCCC
Q 009060 145 FTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALK-ESKPVYISISCN 193 (545)
Q Consensus 145 ~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~a~~-~~GPV~l~iP~d 193 (545)
.++.+++.+... ...+.++.++.. +++.|.. .++||+|.+|..
T Consensus 478 --ed~a~lr~iPnl~V~~Pad~~e~~~----~l~~A~~~~~~Pv~ir~~r~ 522 (663)
T 3kom_A 478 --EHVPSLRLIPNLSVWRPADTIETMI----AWKEAVKSKDTPSVMVLTRQ 522 (663)
T ss_dssp --SHHHHHHTSTTCEEECCCSHHHHHH----HHHHHHHCSSCCEEEECCSS
T ss_pred --HHHHHHhcCCCcEEEeeCCHHHHHH----HHHHHHHhCCCCEEEEccCc
Confidence 246778877542 244445555544 4555555 589999998853
No 64
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=90.69 E-value=0.082 Score=45.94 Aligned_cols=78 Identities=19% Similarity=0.267 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHh---CCceEeCCCCccCCCCCCCCccceecCC-----------
Q 009060 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT---GYPIAIMPSGKGLVPEHHPHFIGTYWGA----------- 290 (545)
Q Consensus 225 i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~---~~Pv~tt~~~kg~~~~~hpl~~G~~~G~----------- 290 (545)
.++++++|..|++.+|+-|.|..-++++..+.+|++.| |+-|=- .-||-. |...|+
T Consensus 12 ~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~f---------aIHPVA-GRMPGhMNVLLAEA~VP 81 (184)
T 1d4o_A 12 LDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRF---------GIHPVA-GRMPGQLNVLLAEAGVP 81 (184)
T ss_dssp HHHHHHHHHHCSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEE---------EECTTC-SSSTTHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEE---------Eecccc-ccCCCcceEEEEEecCC
Confidence 46788999999999999999998888887777777655 443321 123321 111111
Q ss_pred ----CCCHHHHHHhhcCCEEEEeCCC
Q 009060 291 ----VSSSFCGEIVESADAYVFVGPI 312 (545)
Q Consensus 291 ----~~~~~~~~~l~~aD~vl~lG~~ 312 (545)
+--++.|.-+.+.|++|++|..
T Consensus 82 Yd~v~EMdeIN~df~~tDv~lVIGAN 107 (184)
T 1d4o_A 82 YDIVLEMDEINHDFPDTDLVLVIGAN 107 (184)
T ss_dssp GGGEEEHHHHGGGGGGCSEEEEESCS
T ss_pred HHHHHhHHHHhhhhhhcCEEEEecCC
Confidence 1113556677899999999975
No 65
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=90.53 E-value=0.075 Score=46.02 Aligned_cols=78 Identities=28% Similarity=0.349 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHh---CCceEeCCCCccCCCCCCCCccceecCC-----------
Q 009060 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT---GYPIAIMPSGKGLVPEHHPHFIGTYWGA----------- 290 (545)
Q Consensus 225 i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~---~~Pv~tt~~~kg~~~~~hpl~~G~~~G~----------- 290 (545)
.++++++|..|++.+|+-|.|..-++++..+.+|++.| |+-|=- .-||-. |...|+
T Consensus 13 ~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~f---------aIHPVA-GRMPGhmNVLLAEA~VP 82 (180)
T 1pno_A 13 AEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSY---------AIHPVA-GRMPGHMNVLLAEANVP 82 (180)
T ss_dssp HHHHHHHHHTCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEE---------EECTTC-TTSTTHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEE---------Eecccc-ccCCCcceEEEEeeCCC
Confidence 46788999999999999999998878877777776654 443321 123321 111111
Q ss_pred ----CCCHHHHHHhhcCCEEEEeCCC
Q 009060 291 ----VSSSFCGEIVESADAYVFVGPI 312 (545)
Q Consensus 291 ----~~~~~~~~~l~~aD~vl~lG~~ 312 (545)
+--++.|.-+.+.|++|+||..
T Consensus 83 Yd~v~EMdeIN~df~~tDv~lVIGAN 108 (180)
T 1pno_A 83 YDEVFELEEINSSFQTADVAFVIGAN 108 (180)
T ss_dssp GGGEEEHHHHGGGGGGCSEEEEESCC
T ss_pred HHHHhhHHHHhhhhhhcCEEEEeccc
Confidence 1113556677899999999975
No 66
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=90.14 E-value=0.63 Score=45.70 Aligned_cols=111 Identities=17% Similarity=0.265 Sum_probs=70.2
Q ss_pred EEEcCccccccchHHHHHHHHHHhCCceEeCCC--CccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCC
Q 009060 239 VLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDY 316 (545)
Q Consensus 239 vi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~--~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~ 316 (545)
++-.|+|....+..+.+.+||+++|+-|-.|-. -.|.+|.+| .+|. .|. .=.+++.|.+|-+=.-.
T Consensus 200 vVsgGrG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~~--QVGq-TGk---------~V~P~lYiA~GISGAiQ 267 (315)
T 1efv_A 200 VVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDM--QVGQ-TGK---------IVAPELYIAVGISGAIQ 267 (315)
T ss_dssp EEEECGGGCSTGGGHHHHHHHHHHTCEEEECHHHHHTTSSCGGG--BBST-TSB---------CCCCSEEEEESCCCCHH
T ss_pred EEEcCCcCCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCHHh--eecc-CCc---------ccCcceEEEecccCcHH
Confidence 444566777667778999999999999988754 347776554 4554 222 13679999999662211
Q ss_pred cccccccCCCCCcEEEEcCCcceec-CCCcccc-ccHHHHHHHHHHHhcc
Q 009060 317 SSVGYSLLIKKEKAIIVQPHRVTVG-NGPSLGW-VFMADFLSALAKKLRK 364 (545)
Q Consensus 317 ~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~-~d~~~~l~~L~~~l~~ 364 (545)
-..++. ....+|-||.|++..= +...|.- .|+.+++.+|.++++.
T Consensus 268 HlaGm~---~s~~IVAIN~D~~ApIf~~ADygiVgDl~~v~P~L~~~l~~ 314 (315)
T 1efv_A 268 HLAGMK---DSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILKK 314 (315)
T ss_dssp HHTTTT---TCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHHTC-
T ss_pred HHhhcc---cCCEEEEEeCCCCCCcchhcCeEEeeeHHHHHHHHHHHHhc
Confidence 112221 2345888999887310 0122222 3899999999998853
No 67
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=90.06 E-value=0.087 Score=46.85 Aligned_cols=77 Identities=19% Similarity=0.263 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHh---CCceEeCCCCccCCCCCCCCccceecCC------------
Q 009060 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT---GYPIAIMPSGKGLVPEHHPHFIGTYWGA------------ 290 (545)
Q Consensus 226 ~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~---~~Pv~tt~~~kg~~~~~hpl~~G~~~G~------------ 290 (545)
++++++|..|++.+|+-|.|..-++++..+.+|+++| |+-|-- .-||.. |...|+
T Consensus 36 ~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~f---------aIHPVA-GRMPGhMNVLLAEA~VPY 105 (207)
T 1djl_A 36 DNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRF---------GIHPVA-GRMPGQLNVLLAEAGVPY 105 (207)
T ss_dssp HHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEE---------EECTTC-SSSTTHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEE---------EeCccC-CCCCCCCcEEEEEeCCCH
Confidence 5788999999999999999998888887777776654 443321 123321 111111
Q ss_pred ---CCCHHHHHHhhcCCEEEEeCCC
Q 009060 291 ---VSSSFCGEIVESADAYVFVGPI 312 (545)
Q Consensus 291 ---~~~~~~~~~l~~aD~vl~lG~~ 312 (545)
+--++.|.-+.+.|++|+||..
T Consensus 106 d~v~EMdeIN~df~~tDv~lVIGAN 130 (207)
T 1djl_A 106 DIVLEMDEINHDFPDTDLVLVIGAN 130 (207)
T ss_dssp GGEEEHHHHGGGGGGCSEEEEESCC
T ss_pred HHHhhHHHHhhhhhhcCEEEEeccc
Confidence 1113556677899999999975
No 68
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=89.89 E-value=0.45 Score=46.85 Aligned_cols=111 Identities=21% Similarity=0.230 Sum_probs=69.7
Q ss_pred EEEcCccccccchHHHHHHHHHHhCCceEeCCC--CccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCC
Q 009060 239 VLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDY 316 (545)
Q Consensus 239 vi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~--~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~ 316 (545)
++-.|+|....+..+.+.+||+++|+-|-.|-. -.|.+|.+| .+|. .| +.+.-|++.|.+|-+=.-.
T Consensus 205 vVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~~--QVGq----TG-----k~V~P~~lYiA~GISGAiQ 273 (320)
T 1o97_D 205 IMSIGRGIGEETNVEQFRELADEAGATLCCSRPIADAGWLPKSR--QVGQ----SG-----KVVGSCKLYVAMGISGSIQ 273 (320)
T ss_dssp EEEECGGGCSGGGHHHHHHHHHHHTCEEEECHHHHHTTSSCGGG--BBST----TS-----BCCTTCSEEEEESCCCCHH
T ss_pred EEEcCCccCChHHHHHHHHHHHHhCCceeecHHHHhCCCCChhh--Eeec----Cc-----eEecccceEEEEeccCcHH
Confidence 444566777667889999999999999988754 247776554 4554 22 2234459999999662211
Q ss_pred cccccccCCCCCcEEEEcCCcceec-CCCcccc-ccHHHHHHHHHHHhc
Q 009060 317 SSVGYSLLIKKEKAIIVQPHRVTVG-NGPSLGW-VFMADFLSALAKKLR 363 (545)
Q Consensus 317 ~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~-~d~~~~l~~L~~~l~ 363 (545)
-..++. ....+|-||.|++..= +...|.- .|+.+++.+|.++++
T Consensus 274 HlaGm~---~s~~IVAIN~D~~ApIF~~ADygiVgDl~~vvP~L~~~l~ 319 (320)
T 1o97_D 274 HMAGMK---HVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQLA 319 (320)
T ss_dssp HHHHHT---TCSEEEEECSCTTCGGGGTCSEEECSCHHHHHHHHHHHC-
T ss_pred HHhhcc---cCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHHHHh
Confidence 112221 2345888999887310 0122222 389999999998873
No 69
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=89.82 E-value=0.073 Score=46.24 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHh---CCceEeCCC-CccCCCCCCCCc---cce-ecCCCCCHH
Q 009060 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT---GYPIAIMPS-GKGLVPEHHPHF---IGT-YWGAVSSSF 295 (545)
Q Consensus 224 ~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~---~~Pv~tt~~-~kg~~~~~hpl~---~G~-~~G~~~~~~ 295 (545)
..++++++|..|++.+|+-|.|..-++++-.+.+|++.| |+-|---.. --|-+|..--.. +++ |.-.+--++
T Consensus 19 ~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMde 98 (186)
T 2bru_C 19 TAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDE 98 (186)
T ss_dssp -CHHHHHHHHHCSEEEEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEEEECSSSSSSSSTHHHHHHHHTCCTTTEEESCC
T ss_pred CHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEecCCCHHHHhhHHH
Confidence 457889999999999999999998888887777766554 543321110 011122110000 000 000001124
Q ss_pred HHHHhhcCCEEEEeCCC
Q 009060 296 CGEIVESADAYVFVGPI 312 (545)
Q Consensus 296 ~~~~l~~aD~vl~lG~~ 312 (545)
.|.-+.+.|++|+||..
T Consensus 99 IN~df~~tDv~lVIGAN 115 (186)
T 2bru_C 99 INDDFADTDTVLVIGAN 115 (186)
T ss_dssp CHHHHHHCSEEEECBCG
T ss_pred HhcccccCCEEEEeccc
Confidence 46677899999999975
No 70
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=89.62 E-value=0.086 Score=46.72 Aligned_cols=78 Identities=28% Similarity=0.349 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHh---CCceEeCCCCccCCCCCCCCccceecCC-----------
Q 009060 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT---GYPIAIMPSGKGLVPEHHPHFIGTYWGA----------- 290 (545)
Q Consensus 225 i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~---~~Pv~tt~~~kg~~~~~hpl~~G~~~G~----------- 290 (545)
.++++++|..|++.+|+-|.|..-++++..+.+|+++| |+-|=- .-||.. |...|+
T Consensus 36 ~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~f---------aIHPVA-GRMPGhMNVLLAEA~VP 105 (203)
T 2fsv_C 36 AEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSY---------AIHPVA-GRMPGHMNVLLAEANVP 105 (203)
T ss_dssp HHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEE---------EECTTC-SSSTTHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEE---------Eecccc-cCCCCCccEEEEEecCC
Confidence 45688999999999999999998888887777776654 443321 123322 111111
Q ss_pred ----CCCHHHHHHhhcCCEEEEeCCC
Q 009060 291 ----VSSSFCGEIVESADAYVFVGPI 312 (545)
Q Consensus 291 ----~~~~~~~~~l~~aD~vl~lG~~ 312 (545)
+--++.|.-+.+.|++|+||..
T Consensus 106 Yd~v~EMdeIN~df~~tDv~lVIGAN 131 (203)
T 2fsv_C 106 YDEVFELEEINSSFQTADVAFVIGAN 131 (203)
T ss_dssp GGGEEEHHHHGGGSTTCSEEEEESCC
T ss_pred HHHHhhHHHHhhhhhhcCEEEEeccc
Confidence 1113556667899999999975
No 71
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=89.08 E-value=0.37 Score=45.27 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=45.2
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCcccccccCC--CCCcEEEEcCCcceecCC-CccccccHHHHHHHHHHHh
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLLI--KKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSALAKKL 362 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~--~~~~~i~id~d~~~~~~~-~~~~~~d~~~~l~~L~~~l 362 (545)
.+.+.++++|++|++|+++.-+....+.... .+.++|.|+.++...... ...-..++.++|..|.+.+
T Consensus 160 ~a~~~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~t~~~~~~~~~i~~~~~~~l~~l~~~l 230 (235)
T 1s5p_A 160 EIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKL 230 (235)
T ss_dssp HHHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC---CCSEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECCCCCCCccccEEEeCCHHHHHHHHHHHH
Confidence 5667788999999999998655443332222 367899999988765311 1222347888888887765
No 72
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=88.74 E-value=1.4 Score=48.22 Aligned_cols=117 Identities=14% Similarity=0.094 Sum_probs=74.6
Q ss_pred CeEEe-cCchhHHHHHHhHHhhhcC-c-eEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCC
Q 009060 66 LNLVG-CCNELNAGYAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGL 142 (545)
Q Consensus 66 i~~i~-~~hE~~A~~~A~gyar~tg-~-gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~ 142 (545)
=|++. ...|++++.+|.|+|..-| . .++ .|..+-..-+..+|..+-..+.|++++....... .|.+...||.
T Consensus 409 ~R~~d~gIaE~~~vg~a~GlA~~Gg~~~P~~-~~f~~F~~~~~~air~~a~~~lpvv~v~t~~g~g-~G~dG~tHq~--- 483 (680)
T 1gpu_A 409 GRYIRYGIREHAMGAIMNGISAFGANYKPYG-GTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIG-VGEDGPTHQP--- 483 (680)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHCTTCEEEE-EEEHHHHGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTCC---
T ss_pred CceecCCccHHHHHHHHHHHHhcCCCceEEE-eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccc-cCCCCCccCC---
Confidence 35554 6789999999999998765 5 566 4565555556777777778899998885221111 2222223432
Q ss_pred CChHHHHHHhhhcee-EEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 143 PDFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 143 ~~~~d~~~~~~~~~k-~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
..++.+++.+-. ....+.++.++..+++.|++. .++||+|.+|..
T Consensus 484 ---~edla~lr~iP~l~V~~Pad~~e~~~~l~~A~~~---~~~Pv~i~~~r~ 529 (680)
T 1gpu_A 484 ---IETLAHFRSLPNIQVWRPADGNEVSAAYKNSLES---KHTPSIIALSRQ 529 (680)
T ss_dssp ---SSHHHHHHTSSSCEEECCCSHHHHHHHHHHHHHC---SSCCEEEECCSS
T ss_pred ---HHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHHh---CCCcEEEEecCC
Confidence 235778887643 234555666666665555542 279999999864
No 73
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=88.53 E-value=2.6 Score=45.89 Aligned_cols=117 Identities=15% Similarity=0.079 Sum_probs=75.1
Q ss_pred CeEEe-cCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCC
Q 009060 66 LNLVG-CCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 143 (545)
Q Consensus 66 i~~i~-~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~ 143 (545)
=|++. ...|++++.+|.|+|...| ..++. |..+-..-+..+|..+-..+.|++++....... .|.+...||.
T Consensus 402 ~R~id~GIaE~~~~~~a~GlA~~GG~~P~~~-~~~~F~~~~~~~ir~~a~~~~pvv~~~t~~g~g-~G~dG~tHq~---- 475 (673)
T 1r9j_A 402 GRYIRFGVREHAMCAILNGLDAHDGIIPFGG-TFLNFIGYALGAVRLAAISHHRVIYVATHDSIG-VGEDGPTHQP---- 475 (673)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTCC----
T ss_pred CCeEecCccHHHHHHHHHHHHhcCCCEEEEE-ehHHHHHHHHHHHHHHHhcCCCEEEEEECCccC-cCCCCcccCC----
Confidence 46665 6899999999999998756 45544 355555566778888888899988885221111 2322223432
Q ss_pred ChHHHHHHhhhcee-EEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 144 DFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 144 ~~~d~~~~~~~~~k-~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
..++.+++.+-. ....+.++.++..+++.|++. .++||+|.+|..
T Consensus 476 --~edla~lr~iP~l~V~~Pad~~e~~~~l~~a~~~---~~~Pv~i~~~r~ 521 (673)
T 1r9j_A 476 --VELVAALRAMPNLQVIRPSDQTETSGAWAVALSS---IHTPTVLCLSRQ 521 (673)
T ss_dssp --SSHHHHHHHSTTCEEECCSSHHHHHHHHHHHHHC---TTCCEEEECCSS
T ss_pred --HHHHHHHcCCCCCEEEeCCCHHHHHHHHHHHHHh---CCCeEEEEEcCC
Confidence 235677876532 345566666666666665542 279999998864
No 74
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=88.34 E-value=2.4 Score=46.23 Aligned_cols=117 Identities=19% Similarity=0.185 Sum_probs=75.0
Q ss_pred CeEEe-cCchhHHHHHHhHHhhhc-C-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCC
Q 009060 66 LNLVG-CCNELNAGYAADGYARSR-G-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGL 142 (545)
Q Consensus 66 i~~i~-~~hE~~A~~~A~gyar~t-g-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~ 142 (545)
=|++. ...|++++.+|.|+|..- | ..++. |..+-+.-+..+|..+-..+.|++++....... .|.+...||.
T Consensus 414 ~R~id~gIaE~~~v~~a~GlA~~G~~~~P~~~-t~~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g-~G~dG~tHq~--- 488 (675)
T 1itz_A 414 ERNVRFGVREHGMGAICNGIALHSPGFVPYCA-TFFVFTDYMRGAMRISALSEAGVIYVMTHDSIG-LGEDGPTHQP--- 488 (675)
T ss_dssp CCBCCCCSCHHHHHHHHHHHHTTCTTCEEEEE-EEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTCC---
T ss_pred CCeEeecccHHHHHHHHHHHHhcCCCCEEEEE-EHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc-cCCCCCCcCc---
Confidence 35665 559999999999999875 4 34443 567777677788888888999998886221111 2222223432
Q ss_pred CChHHHHHHhhhcee-EEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 143 PDFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 143 ~~~~d~~~~~~~~~k-~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
..++.+++.+-. ....+.++.++..+++.|++. .++||+|.+|..
T Consensus 489 ---~edla~lr~iP~l~V~~Pad~~e~~~~l~~a~~~---~~~Pv~i~~~r~ 534 (675)
T 1itz_A 489 ---IEHLVSFRAMPNILMLRPADGNETAGAYKVAVLN---RKRPSILALSRQ 534 (675)
T ss_dssp ---SSHHHHHHSSSSCEEECCCSHHHHHHHHHHHHHC---TTSCEEEEECSS
T ss_pred ---HHHHHHhccCCCeEEEECCCHHHHHHHHHHHHHh---CCCcEEEEecCC
Confidence 235677786532 235555666666666555542 279999999964
No 75
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=88.24 E-value=0.92 Score=45.59 Aligned_cols=113 Identities=18% Similarity=0.072 Sum_probs=68.4
Q ss_pred HHHHHhHHhhhc---C-ceEEEEcCCcchHHH---HHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHH
Q 009060 77 AGYAADGYARSR---G-VGACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQEL 149 (545)
Q Consensus 77 A~~~A~gyar~t---g-~gv~~~t~GpG~~n~---~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (545)
..-+|.|.+++. | -.++++..|=|..+. .-++..|...+.|+|+|.-+..... ... ........ +..
T Consensus 147 ~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi-~~~--~~~~~~~~---d~~ 220 (368)
T 1w85_A 147 QYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAI-STP--VEKQTVAK---TLA 220 (368)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEET-TEE--GGGTCSCS---CSG
T ss_pred cccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccc-eec--cccccCCC---CHH
Confidence 444566666553 3 244445567777662 2356678889999999986542111 100 01111111 234
Q ss_pred HHhhhceeEEEEeC--ChhhHHHHHHHHHHHhhhCCCcEEEEeCCCCC
Q 009060 150 RCFQAITCSQAVVN--NLGDAHELIDTAISTALKESKPVYISISCNLP 195 (545)
Q Consensus 150 ~~~~~~~k~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv~ 195 (545)
.+++.+--...++. +++++...+++|++.+....||+.|++-..-.
T Consensus 221 ~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~ 268 (368)
T 1w85_A 221 QKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRY 268 (368)
T ss_dssp GGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCS
T ss_pred HHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecc
Confidence 45666544445665 68888888888888887788999999877643
No 76
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=87.85 E-value=0.74 Score=46.00 Aligned_cols=69 Identities=10% Similarity=0.057 Sum_probs=46.6
Q ss_pred HHHHhhcCCEEEEeCCCCCCCcccccccCC-CCCcEEEEcCCcceecCCCccccccHHHHHHHHHHHhcc
Q 009060 296 CGEIVESADAYVFVGPIFNDYSSVGYSLLI-KKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRK 364 (545)
Q Consensus 296 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~~~~~~~~~d~~~~l~~L~~~l~~ 364 (545)
+.+.+.+||++|++|+++.-+....+-... .+.++|.|+.++.........-..++.+++..|.+.+..
T Consensus 249 a~~~~~~aDllLviGTSL~V~Paa~lv~~~~~~~~~v~IN~~~t~~~~~dl~i~g~~~~vl~~L~~~lgw 318 (354)
T 2hjh_A 249 IREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKHAEFDLSLLGYCDDIAAMVAQKCGW 318 (354)
T ss_dssp HHHHTTTCCEEEEESCCCCEETGGGHHHHSCTTSCEEEEESSCCTTSCCSEEEESCHHHHHHHHHHHHTC
T ss_pred HHHHHhhCCEEEEECcCCCchhHHHHHHHHhcCCcEEEEcCCCCCCCCcCEEEeCCHHHHHHHHHHHcCC
Confidence 456678999999999998755544333222 366899999888643211122234788999999888864
No 77
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=87.81 E-value=2.9 Score=45.72 Aligned_cols=115 Identities=15% Similarity=0.117 Sum_probs=72.7
Q ss_pred eEEe-cCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCC
Q 009060 67 NLVG-CCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (545)
Q Consensus 67 ~~i~-~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~ 144 (545)
|++. ..-|++++.+|.|.|...| ..++.+ ..+=+.-+...|..+-..+.|++++....... .|.+...||.+
T Consensus 449 R~~d~GIaE~~mv~~AaGlA~~~G~~Pv~~~-f~~F~~~~~~~ir~~a~~~lpv~~v~thdg~g-vG~dG~THq~~---- 522 (711)
T 3uk1_A 449 NHINYGVREFGMSAAINGLVLHGGYKPFGGT-FLTFSDYSRNALRVAALMKVPSIFVFTHDSIG-LGEDGPTHQSV---- 522 (711)
T ss_dssp SEEECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTCCS----
T ss_pred cEEEeCccHHHHHHHHHHHHHcCCCEEEEEE-hHHHHHHHHHHHHHhhhcCCCEEEEEECCCcC-cCCCCCccCCh----
Confidence 5665 4789999999999997668 555443 33333344566666667899998876322111 22222334322
Q ss_pred hHHHHHHhhhcee-EEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 145 FTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 145 ~~d~~~~~~~~~k-~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
.++.+++.+-. ....+.++.++..++..|++ .++||+|.+|..
T Consensus 523 --ed~a~lr~iPnl~V~~Pad~~E~~~~l~~Ai~----~~~Pv~ir~~r~ 566 (711)
T 3uk1_A 523 --EHVASLRLIPNLDVWRPADTVETAVAWTYAVA----HQHPSCLIFSRQ 566 (711)
T ss_dssp --SHHHHHHTSTTCEEECCSSHHHHHHHHHHHHH----SSSCEEEECCSS
T ss_pred --hHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh----cCCCEEEEeeCC
Confidence 24678888743 33556667777766666665 589999998854
No 78
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=85.51 E-value=1.4 Score=42.91 Aligned_cols=109 Identities=20% Similarity=0.239 Sum_probs=68.0
Q ss_pred EEEcCccccccchHHHHHHHHHHhCCceEeCCC--CccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCC
Q 009060 239 VLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDY 316 (545)
Q Consensus 239 vi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~--~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~ 316 (545)
++-.|+|....+..+.+.+||+++|+-|-.|-. -.|.+|.+| .+|. .|. .=.+++.|.+|-+=.-.
T Consensus 195 vVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~~--QVGq-TGk---------~V~P~lYiA~GISGAiQ 262 (307)
T 1efp_A 195 VVSGGRGLGSKESFAIIEELADKLGAAVGASRAAVDSGYAPNDW--QVGQ-TGK---------VVAPELYVAVGISGAIQ 262 (307)
T ss_dssp EEEECGGGCSSSTTHHHHHHHHHHTCEEEECHHHHHTTSSCGGG--BBSS-SSB---------CCCCSEEEEESCCCCHH
T ss_pred EEEcCCcCCCHHHHHHHHHHHHHhCCceeecHHHHhCCCCChhh--Eecc-CCc---------ccCCceEEEEeccCcHH
Confidence 444566776666778999999999999988754 247776554 4554 232 13679999999662211
Q ss_pred cccccccCCCCCcEEEEcCCcceec-CCCcccc-ccHHHHHHHHHHHh
Q 009060 317 SSVGYSLLIKKEKAIIVQPHRVTVG-NGPSLGW-VFMADFLSALAKKL 362 (545)
Q Consensus 317 ~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~-~d~~~~l~~L~~~l 362 (545)
-..++. ....+|-||.|++..= +...|.- .|+.+++.+|.+++
T Consensus 263 HlaGm~---~s~~IVAIN~D~~ApIF~~ADygiVgDl~~v~P~L~~~l 307 (307)
T 1efp_A 263 HLAGMK---DSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGKL 307 (307)
T ss_dssp HHTTTT---TCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHTC
T ss_pred HHhhhc---cCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHhhC
Confidence 112221 2345888999887310 0122222 38999999988753
No 79
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=85.30 E-value=0.75 Score=43.43 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=45.2
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCcccccccC--CCCCcEEEEcCCcceecCC-CccccccHHHHHHHHHHHhc
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSALAKKLR 363 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~-~~~~~~d~~~~l~~L~~~l~ 363 (545)
.+.+.+++||++|++|+++.-+....+... .++.++|.||.++...... ...-..++.++|..|.+.+.
T Consensus 173 ~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~lg 244 (246)
T 1yc5_A 173 EAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGG 244 (246)
T ss_dssp HHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCEEEEECCCCcchhHHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHcC
Confidence 355677899999999998765443333211 1367899999988755311 11223478899999887663
No 80
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=85.14 E-value=1.4 Score=43.59 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=47.0
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCcccccccC--CCCCcEEEEcCCcceecC-CCccccccHHHHHHHHHHHhcc
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSALAKKLRK 364 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~-~~~~~~~d~~~~l~~L~~~l~~ 364 (545)
.+.+.+.+||++|++|+++.-+....+-.. ..+.+++.||.++..... .......++.+++..|.+.+..
T Consensus 199 ~A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN~~pT~~d~~adl~i~g~a~evl~~L~~~Lg~ 271 (355)
T 3pki_A 199 LADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMEHLGL 271 (355)
T ss_dssp HHHHHHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCCccCEEEeCCHHHHHHHHHHHhCC
Confidence 345677899999999999876655444221 145689999988765431 1112233688999999988753
No 81
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=84.96 E-value=0.98 Score=42.70 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=44.4
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCcccccccC--CCCCcEEEEcCCcceecCC-CccccccHHHHHHHHHHHh
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSALAKKL 362 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~-~~~~~~d~~~~l~~L~~~l 362 (545)
.+.+.+++||++|++|+++.-+....+... .++.++|.||.++...... ...-..++.++|..|.+.+
T Consensus 170 ~a~~~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~l 240 (249)
T 1m2k_A 170 RAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240 (249)
T ss_dssp HHHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEccCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHH
Confidence 345667899999999998765544332211 2467899999988755311 1122347788888887665
No 82
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=84.95 E-value=1.7 Score=44.28 Aligned_cols=111 Identities=15% Similarity=-0.051 Sum_probs=65.5
Q ss_pred HHHHhHHhhhc---C-ceEEEEcCCcchHH---HHHHHHHhHhcCCcEEEEeCCCCCcccCCCccccccc-CCCChHHHH
Q 009060 78 GYAADGYARSR---G-VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTI-GLPDFTQEL 149 (545)
Q Consensus 78 ~~~A~gyar~t---g-~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~-~~~~~~d~~ 149 (545)
.-+|.|.+++. + -.++++..|=|.++ ..-++..|..-++|+|+|.-+.... .... ..... ... |..
T Consensus 187 lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~g-i~~~--~~~~~~~~~---d~a 260 (407)
T 1qs0_A 187 FVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWA-ISTF--QAIAGGEST---TFA 260 (407)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEE-TTEE--GGGGTTTTC---CST
T ss_pred hhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcc-eeec--cccccCCCC---CHH
Confidence 33555655543 3 23344445666654 3467777888999988887543211 1110 01111 111 233
Q ss_pred HHhhhceeEEEEeC--ChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 150 RCFQAITCSQAVVN--NLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 150 ~~~~~~~k~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
..++.+--...+|. +++++...+++|++.++...||+.|++-..-
T Consensus 261 ~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 307 (407)
T 1qs0_A 261 GRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYR 307 (407)
T ss_dssp HHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCC
T ss_pred HHHHHcCCeEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeec
Confidence 45555544445665 5678888888888888878899999987664
No 83
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=84.65 E-value=1.3 Score=43.23 Aligned_cols=70 Identities=16% Similarity=0.149 Sum_probs=46.9
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCcccccccC--CCCCcEEEEcCCcceecCC-CccccccHHHHHHHHHHHhcc
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSALAKKLRK 364 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~-~~~~~~d~~~~l~~L~~~l~~ 364 (545)
.+.+.+.+||++|++|+++.-+...++... ..+.+++.||.++...... ......++.+++..|.+.+..
T Consensus 199 ~a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~~~t~~d~~adl~i~g~~~evl~~L~~~Lg~ 271 (318)
T 3k35_A 199 LADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLGL 271 (318)
T ss_dssp HHHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCCcccEEEeCCHHHHHHHHHHHhCC
Confidence 355677899999999999876655443211 2456799999887654311 112233688999999888753
No 84
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=83.71 E-value=1.1 Score=47.88 Aligned_cols=112 Identities=10% Similarity=-0.041 Sum_probs=61.7
Q ss_pred HHHHHhHHhhhcCceEEEEcCCcchHH-HHHHHHHhHhcCCcEEEEeCCCCCcccCCC-------cccccccCCCChHHH
Q 009060 77 AGYAADGYARSRGVGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTN-------RILHHTIGLPDFTQE 148 (545)
Q Consensus 77 A~~~A~gyar~tg~gv~~~t~GpG~~n-~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~-------~~~~~~~~~~~~~d~ 148 (545)
+.-+|.|.+...++.+|++ |=|... .+..|..|...+.|+++|.-+......-+. .......+.....|.
T Consensus 441 ~l~~AiGaa~~~~~vv~i~--GDGsf~~~~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 518 (578)
T 3lq1_A 441 VVSSALGASVVFQPMFLLI--GDLSFYHDMNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESLFGTSTELDF 518 (578)
T ss_dssp HHHHHHHHTTTSSSEEEEE--EHHHHHHTGGGGHHHHHTTCCEEEEEECCC-------------------------CCCT
T ss_pred HHHHHHHHhcCCCCEEEEE--chHHHHhhHHHHHhhccCCCCeEEEEEECCcCccccccccccccchhhhhccCCCCCCH
Confidence 4567888764322666665 444332 257788898999999888876542211110 000000110001244
Q ss_pred HHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 149 LRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 149 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
..+++.+--...++++++++.+ |++.+...+||+.|++..|-
T Consensus 519 ~~~a~a~G~~~~~v~~~~el~~----al~~a~~~~gp~liev~~~~ 560 (578)
T 3lq1_A 519 RFAAAFYDADYHEAKSVDELEE----AIDKASYHKGLDIIEVKTNR 560 (578)
T ss_dssp HHHHHHTTCEEEECCSHHHHHH----HHHHHTTSSSEEEEEEC---
T ss_pred HHHHHHcCCceEecCCHHHHHH----HHHHHHhCCCCEEEEEECCc
Confidence 5677777556688888776654 45555556899999998874
No 85
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=83.51 E-value=1.2 Score=47.53 Aligned_cols=124 Identities=17% Similarity=0.080 Sum_probs=70.1
Q ss_pred CCeEEecCchh---HHHHHHhHHhhhcC-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCC-----cc
Q 009060 65 ELNLVGCCNEL---NAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN-----RI 135 (545)
Q Consensus 65 ~i~~i~~~hE~---~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~-----~~ 135 (545)
+.+++..+--. +..-+|.|.+.+.+ +.+|++--| ++.-.++.|..|...+.|+++|.-+.......+. ..
T Consensus 406 ~~~~~~~~g~~g~~G~l~~A~Gaa~a~~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~ 484 (556)
T 3hww_A 406 GYPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDL-SALYDLNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSE 484 (556)
T ss_dssp TCCEEECCSSCCSSSHHHHHHHHHHHHCCCEEEEEEHH-HHHHTGGGHHHHTTCSSCEEEEEEESCC-------------
T ss_pred CceEEecCcccccccHHHHHHHHHhcCCCcEEEEEccH-HhhhcchhhHhhcccCCCcEEEEEECCCCCcccCCCCcchh
Confidence 45566543221 12557788777766 666665333 2333367788899999999888765443110000 00
Q ss_pred cccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 136 LHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 136 ~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
...........|...+++.+--...++++++++. +|++.++..+||+.|++..|
T Consensus 485 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~----~al~~a~~~~gp~liev~~~ 538 (556)
T 3hww_A 485 RERFYLMPQNVHFEHAAAMFELKYHRPQNWQELE----TAFADAWRTPTTTVIEMVVN 538 (556)
T ss_dssp ----CCCCCCCCSHHHHHHTTCEEECCSSHHHHH----HHHHHHTTSSSEEEEEEECC
T ss_pred HHHhccCCCCCCHHHHHHHcCCcEEecCCHHHHH----HHHHHHHhCCCCEEEEEECC
Confidence 0000111111244667777755567888876654 55555566789999999877
No 86
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=83.24 E-value=1.6 Score=44.96 Aligned_cols=69 Identities=10% Similarity=0.025 Sum_probs=46.3
Q ss_pred HHHHhhcCCEEEEeCCCCCCCccccccc-CCCCCcEEEEcCCcceecCCCccccccHHHHHHHHHHHhcc
Q 009060 296 CGEIVESADAYVFVGPIFNDYSSVGYSL-LIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRK 364 (545)
Q Consensus 296 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~d~~~~l~~L~~~l~~ 364 (545)
+.+.+.+||++|++|+++.-+...++-. ...+.++|.|+.++.........-..+..+++..|.+.+..
T Consensus 387 a~~~~~~aDLlLVIGTSL~VyPaA~Lv~~a~~~~p~ViIN~ept~~~~~Dl~l~G~cdevv~~L~~~LGw 456 (492)
T 4iao_A 387 IREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKHAEFDLSLLGYCDDIAAMVAQKCGW 456 (492)
T ss_dssp HHHHTTTCSEEEEESCCCCEETGGGHHHHSBTTSCEEEEESSCCTTSCCSEEEESCHHHHHHHHHHHTTC
T ss_pred HHHHHhhCCEEEEeccCCCccchhhHHHHHhcCCcEEEEcCCCCCCCCccEEEeCCHHHHHHHHHHHhCC
Confidence 4456789999999999986555444322 23456788899888642111122234788999999998864
No 87
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=83.08 E-value=2.9 Score=44.78 Aligned_cols=114 Identities=13% Similarity=0.038 Sum_probs=70.5
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccc-----cCC-CChHHH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHT-----IGL-PDFTQE 148 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~-----~~~-~~~~d~ 148 (545)
+.-+|.|.+.+.. +.+|++--|. +.-.+..+..|...+.|+++|.-+.......+. .|+. .+. ....|.
T Consensus 418 ~l~~AiGaala~~~~~vv~i~GDG~-~~~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~--~q~~~~~~~~~~~~~~~d~ 494 (590)
T 1v5e_A 418 AIPGGLGAKNTYPDRQVWNIIGDGA-FSMTYPDVVTNVRYNMPVINVVFSNTEYAFIKN--KYEDTNKNLFGVDFTDVDY 494 (590)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEEHHH-HHHHGGGHHHHHHTTCCCEEEEEECSSCTTGGG--TTSSSCCSCCCCCCCCCCH
T ss_pred hHHHHHHHHHhCCCCeEEEEEechH-HhchHHHHHHHHHhCCCCEEEEEECCchHHHHH--HHHHhcCCCccccCCCCCH
Confidence 4557778777653 5666654443 333368888899999998888855432211110 0000 000 011355
Q ss_pred HHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 149 LRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 149 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
..+++.+--...++++++++.+.+++|+..+. .+||+.|++..+-
T Consensus 495 ~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~-~~gp~liev~~~~ 539 (590)
T 1v5e_A 495 AKIAEAQGAKGFTVSRIEDMDRVMAEAVAANK-AGHTVVIDCKITQ 539 (590)
T ss_dssp HHHHHHTTSEEEEECBHHHHHHHHHHHHHHHH-TTCCEEEEEECCS
T ss_pred HHHHHHcCCEEEEECCHHHHHHHHHHHHHhcC-CCCCEEEEEEecc
Confidence 67777776566788888888877777776543 2799999998873
No 88
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=83.07 E-value=1 Score=42.68 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=44.4
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCcccccccC--CCCCcEEEEcCCcceecCC-CccccccHHHHHHHHHHHh
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSALAKKL 362 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~-~~~~~~d~~~~l~~L~~~l 362 (545)
.+.+.+++||++|++|+++.-+....+... .++.++|.||.++...... ...-..++.++|..|.+.+
T Consensus 176 ~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d~~~~~~i~~~~~~~l~~l~~~l 246 (253)
T 1ma3_A 176 EAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEV 246 (253)
T ss_dssp HHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGGGCSEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCceeccHHHHHHHHHHcCCeEEEEeCCCCCCCCceeEEEeCCHHHHHHHHHHHH
Confidence 355677899999999998765544333211 1367899999988755311 1122347888888887765
No 89
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=83.07 E-value=6.3 Score=42.95 Aligned_cols=115 Identities=22% Similarity=0.175 Sum_probs=69.8
Q ss_pred eEEe-cCchhHHHHHHhHHhhhcC-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCC
Q 009060 67 NLVG-CCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (545)
Q Consensus 67 ~~i~-~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~ 144 (545)
|++. ..-|++++.+|.|.|...| ..++- |..+=..=+-.++..+-..+.||+++....... .|.+...||.+
T Consensus 428 R~~d~GIaE~~mv~~A~GlA~~gG~~P~~~-tf~~Fs~f~~~air~~al~~lpVv~v~~~~gig-vG~dG~THq~i---- 501 (690)
T 3m49_A 428 KNIWYGVREFAMGAAMNGIALHGGLKTYGG-TFFVFSDYLRPAIRLAALMQLPVTYVFTHDSIA-VGEDGPTHEPI---- 501 (690)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCGGGCCS----
T ss_pred ceEEcCchHHHHHHHHHHHHHcCCCEEEEE-ecHHHHHHHHHHHHHHHhcCCCcEEEEECCCcC-CCCCCCccCCH----
Confidence 5554 6699999999999998867 44443 222222223455666667899998887432221 23222345432
Q ss_pred hHHHHHHhhhceeE-EEEeCChhhHHHHHHHHHHHhhhC-CCcEEEEeCCC
Q 009060 145 FTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKE-SKPVYISISCN 193 (545)
Q Consensus 145 ~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~a~~~-~GPV~l~iP~d 193 (545)
.++.+++.+-.. ...+.++.++.. +++.|... ++||+|.+|..
T Consensus 502 --ed~a~lr~iPnl~V~~Pad~~E~~~----~l~~Ai~~~~~Pv~ir~~R~ 546 (690)
T 3m49_A 502 --EQLAALRAMPNVSVIRPADGNESVA----AWRLALESTNKPTALVLTRQ 546 (690)
T ss_dssp --SHHHHHHTSTTCEEECCSSHHHHHH----HHHHHHHCSSSCEEEECCSS
T ss_pred --HHHHHHhcCCCCEEEeeCCHHHHHH----HHHHHHHcCCCCEEEEeecc
Confidence 246788887543 344445555544 45555554 79999998854
No 90
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=82.78 E-value=3.7 Score=41.03 Aligned_cols=108 Identities=17% Similarity=0.182 Sum_probs=61.4
Q ss_pred HHHhHHhhhc---C-ceEEEEcCCcchHHH---HHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHH
Q 009060 79 YAADGYARSR---G-VGACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRC 151 (545)
Q Consensus 79 ~~A~gyar~t---g-~gv~~~t~GpG~~n~---~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 151 (545)
-.|.|.+++. | -.++++..|=|+++. .-++..|...+.|+|+|.-+.. ...... ........++..
T Consensus 147 p~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~-~g~~t~--~~~~~~~~~~~~---- 219 (365)
T 2ozl_A 147 PLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNR-YGMGTS--VERAAASTDYYK---- 219 (365)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECS-EETTEE--HHHHCSCCCGGG----
T ss_pred HHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCC-cccCCC--cccccCCCCHHH----
Confidence 3455555443 3 334444456666652 4467788889999999984331 111110 000000112211
Q ss_pred hhhceeEEEEeC--ChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 152 FQAITCSQAVVN--NLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 152 ~~~~~k~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
+.+---..+|. +++++...+++|++.++..+||+.|++-..-
T Consensus 220 -ra~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R 263 (365)
T 2ozl_A 220 -RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYR 263 (365)
T ss_dssp -TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCC
T ss_pred -HhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeec
Confidence 12211224555 6888889999998888888999999987663
No 91
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=82.53 E-value=4.8 Score=43.94 Aligned_cols=157 Identities=15% Similarity=0.072 Sum_probs=90.7
Q ss_pred CCccHHHHHHHHHHHcCC--CEEEecCCCChHHH------HHhhhcC-------CC---CeEEe-cCchhHHHHHHhHHh
Q 009060 25 SVGTLGRHLARRLVEIGA--KDVFSVPGDFNLTL------LDHLIAE-------PE---LNLVG-CCNELNAGYAADGYA 85 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV--~~vFg~pG~~~~~l------~~al~~~-------~~---i~~i~-~~hE~~A~~~A~gya 85 (545)
..++.-+++-+.|.+..= ..++++..+-...- .+.+.+. ++ =|++. ..-|++++.+|.|.|
T Consensus 373 ~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE~~mv~~A~GlA 452 (700)
T 3rim_A 373 KALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHAMGAILSGIV 452 (700)
T ss_dssp SCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCccHHHHHHHHHHHH
Confidence 456667777777776653 45666544322110 1233221 21 36775 579999999999999
Q ss_pred hhcC-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhcee-EEEEeC
Q 009060 86 RSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITC-SQAVVN 163 (545)
Q Consensus 86 r~tg-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k-~~~~v~ 163 (545)
...| ..++- |..+=+.-+.+.+-.+-..+.||+++....... .|.+...||.+ .++.+++.+-. ....+.
T Consensus 453 ~~gG~~Pv~~-tF~~F~d~~~~~ir~~al~~lpvv~v~thdg~g-vG~dG~THq~i------ed~a~lr~iPnl~V~~Pa 524 (700)
T 3rim_A 453 LHGPTRAYGG-TFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIG-LGEDGPTHQPI------EHLSALRAIPRLSVVRPA 524 (700)
T ss_dssp HHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTSCS------SHHHHHHTSTTCEEECCS
T ss_pred HcCCCEEEEE-ecHHHHHHHHHHHHHhcCCCCCEEEEEeCCCcc-cCCCCCccCCh------hHHHHHhcCCCCEEEeCC
Confidence 8867 44443 333222335566777778899998876322221 23222334332 35778888743 234455
Q ss_pred ChhhHHHHHHHHHHHhhhC-C--CcEEEEeCCC
Q 009060 164 NLGDAHELIDTAISTALKE-S--KPVYISISCN 193 (545)
Q Consensus 164 ~~~~~~~~l~~A~~~a~~~-~--GPV~l~iP~d 193 (545)
++.++..++ +.|... . |||+|.+|..
T Consensus 525 d~~e~~~~l----~~Ai~~~~~~~Pv~ir~~r~ 553 (700)
T 3rim_A 525 DANETAYAW----RTILARRNGSGPVGLILTRQ 553 (700)
T ss_dssp SHHHHHHHH----HHHHTTTTCSSCEEEECCSS
T ss_pred CHHHHHHHH----HHHHHccCCCCCEEEEeccc
Confidence 555555544 445544 3 7999998864
No 92
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=81.62 E-value=1.2 Score=43.03 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=43.0
Q ss_pred HhhcCCEEEEeCCCCCCCcccccccCC-CCCcEEEEcCCcce-e--c--CCCccccccHHHHHHHHHHHhcc
Q 009060 299 IVESADAYVFVGPIFNDYSSVGYSLLI-KKEKAIIVQPHRVT-V--G--NGPSLGWVFMADFLSALAKKLRK 364 (545)
Q Consensus 299 ~l~~aD~vl~lG~~~~~~~~~~~~~~~-~~~~~i~id~d~~~-~--~--~~~~~~~~d~~~~l~~L~~~l~~ 364 (545)
.+.++|++|++|+++.-+....+.... ++.++|.||.++.. + . .....-..++.+++..|.+.+..
T Consensus 208 ~~~~~DlllviGTSl~V~Pa~~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~~ 279 (289)
T 1q1a_A 208 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGW 279 (289)
T ss_dssp --CCCCEEEEESCCCCEETTTHHHHHSCTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHTC
T ss_pred HhccCCEEEEEccCCChhhHHHHHHHHhcCCCEEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcCC
Confidence 367999999999998655443333222 36788999988763 1 1 01222334789999999887753
No 93
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=81.25 E-value=1.5 Score=42.06 Aligned_cols=65 Identities=9% Similarity=-0.066 Sum_probs=42.2
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCccccccc--CCCCCcEEEEcCCcceecCC-CccccccHHHHHHHHH
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSALA 359 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~-~~~~~~d~~~~l~~L~ 359 (545)
.+.+.+++||++|++|+++.-+....+.. ..++.+++.||.++...... ...-..++.++|..|+
T Consensus 205 ~a~~~~~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~d~~~~~~i~g~~~~~l~~l~ 272 (273)
T 3riy_A 205 EVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 272 (273)
T ss_dssp HHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHTTCCEEEEESSCCTTGGGSSEEEESCHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEeeCCcchhHHHhHHHHHHCCCEEEEECCCCCCCCcceeEEEeCCHHHHHHHHh
Confidence 45567789999999999986555443321 12567899999988755311 1122336778887764
No 94
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=81.16 E-value=2.2 Score=46.01 Aligned_cols=120 Identities=11% Similarity=-0.036 Sum_probs=75.2
Q ss_pred hhHHHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCC-------Cc-----ccccc
Q 009060 74 ELNAGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGT-------NR-----ILHHT 139 (545)
Q Consensus 74 E~~A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~-------~~-----~~~~~ 139 (545)
-..+.-+|.|.+.+.. +.+|++--|. +.-.+.+|..|...+.|+++|.-+.......+ +. .....
T Consensus 444 ~G~~l~~AiGaala~~~~~vv~i~GDGs-~~~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (616)
T 2pan_A 444 LGWTIPAALGVCAADPKRNVVAISGDFD-FQFLIEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENI 522 (616)
T ss_dssp TTCHHHHHHHHHHHCTTCEEEEEEEHHH-HHHTGGGHHHHHHTTCCCEEEEEECSBCHHHHHHGGGGTCCCSCBCCCCCT
T ss_pred ccchHHHHHHHHHhCCCCcEEEEEcchh-hhCCHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCcccccccccc
Confidence 4447778889887763 5555543333 23336788899999999887776544221100 00 00000
Q ss_pred cCCC---ChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 140 IGLP---DFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 140 ~~~~---~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
.... ...|...+++.+--...++.+++++.+.+++|+..+...+||+.|++..+-
T Consensus 523 ~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~~~~gp~lIev~~~~ 580 (616)
T 2pan_A 523 NSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVILER 580 (616)
T ss_dssp TCGGGTTCCCCHHHHHHHTTCEEEEECSGGGHHHHHHHHHHHHHHHCSCEEEEEEBCS
T ss_pred ccccCCCCCCCHHHHHHHcCCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 0000 002456777777555678999999999988888766656899999998773
No 95
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=80.11 E-value=3.8 Score=39.36 Aligned_cols=69 Identities=9% Similarity=-0.012 Sum_probs=45.4
Q ss_pred HHHhhcCCEEEEeCCCCCCCcccccccCC-CCCcEEEEcCCcce-e---cC-CCccccccHHHHHHHHHHHhccC
Q 009060 297 GEIVESADAYVFVGPIFNDYSSVGYSLLI-KKEKAIIVQPHRVT-V---GN-GPSLGWVFMADFLSALAKKLRKN 365 (545)
Q Consensus 297 ~~~l~~aD~vl~lG~~~~~~~~~~~~~~~-~~~~~i~id~d~~~-~---~~-~~~~~~~d~~~~l~~L~~~l~~~ 365 (545)
.+.+.+||++|++|+++.-+....+.... .+.+++.|+.++.. + .+ .......++.+.+..|.+.+..+
T Consensus 192 ~~~~~~aDlllviGTSl~V~Paa~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~~~~~~~L~~~lgw~ 266 (285)
T 3glr_A 192 VVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVHGVESLVELLGWT 266 (285)
T ss_dssp HHHHHHCSEEEEESCCCCEETTGGGGGSSCTTSCEEEEESSCCTHHHHSCCTTEEEEESCHHHHHHHHHHHHTCH
T ss_pred HHHHhcCCEEEEeCCCCccccHHHHHHHHhCCCcEEEECCCCcCccccCCCCccEEEcCCHHHHHHHHHHHhCCH
Confidence 45668999999999998665544443323 35578889988752 1 00 11122237889999999988654
No 96
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=79.97 E-value=12 Score=39.59 Aligned_cols=125 Identities=15% Similarity=0.030 Sum_probs=72.3
Q ss_pred CCeEEecCch---hHHHHHHhHHhhhc-C-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCC-c---c
Q 009060 65 ELNLVGCCNE---LNAGYAADGYARSR-G-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN-R---I 135 (545)
Q Consensus 65 ~i~~i~~~hE---~~A~~~A~gyar~t-g-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~-~---~ 135 (545)
.-+++....- ..+.-+|.|.+.+. + +.+|++--|. +.-.+..+..|...+.|+++|.-+......-+. . .
T Consensus 396 ~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDGs-~~~~~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~~~ 474 (549)
T 3eya_A 396 KRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGG-FSMLMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGG 474 (549)
T ss_dssp SCEEECCTTTCCTTCHHHHHHHHHHHSTTSCEEEEEEHHH-HHHTGGGHHHHHHTTCCCEEEEEECSBCCCC--------
T ss_pred CCcEEeCCCCchhhhHHHHHHHHHHhCCCCcEEEEEccch-hhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHhcC
Confidence 3456543322 34566788887776 3 5666653332 222367888999999998887765432211000 0 0
Q ss_pred cccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 136 LHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 136 ~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
...........|...+++.+--...++++++++.+.+++|+ ..+||+.|++..|-
T Consensus 475 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~----~~~gp~liev~~~~ 529 (549)
T 3eya_A 475 YLTDGTELHDTNFARIAEACGITGIRVEKASEVDEALQRAF----SIDGPVLVDVVVAK 529 (549)
T ss_dssp ----CCBCCCCCHHHHHHHTTSEEEEECSGGGHHHHHHHHH----HSSSCEEEEEEBCC
T ss_pred CCCcCCcCCCCCHHHHHHHcCCcEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEecc
Confidence 00000000112456677777555678889888866666654 45899999999884
No 97
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=79.13 E-value=4.5 Score=40.99 Aligned_cols=109 Identities=15% Similarity=0.029 Sum_probs=62.5
Q ss_pred HHHhHHhhhc---C-ceEEEEcCCcchHH---HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHH
Q 009060 79 YAADGYARSR---G-VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRC 151 (545)
Q Consensus 79 ~~A~gyar~t---g-~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 151 (545)
-+|.|.+++. + -.++++..|=|.++ ..-++..|..-+.|+|+|.-+.... .... ...... ..+....
T Consensus 169 p~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~-i~~~--~~~~~~---~~d~~~~ 242 (400)
T 2bfd_A 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYA-ISTP--TSEQYR---GDGIAAR 242 (400)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEE-TTEE--GGGTCS---SSTTGGG
T ss_pred cHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCcee-eeec--ccccCC---CCCHHHH
Confidence 3455555432 2 23333334555543 2366777778889999998554211 1110 011111 1133455
Q ss_pred hhhceeEEEEeC--ChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 152 FQAITCSQAVVN--NLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 152 ~~~~~k~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
++.+--...++. +++++...+++|++.++...||+.|++-..
T Consensus 243 a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~ty 286 (400)
T 2bfd_A 243 GPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTY 286 (400)
T ss_dssp TGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred HHHcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEee
Confidence 666544445555 577888888888888877789999998764
No 98
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=78.69 E-value=2.7 Score=41.97 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=42.7
Q ss_pred HhhcCCEEEEeCCCCCCCcccccccCC-CCCcEEEEcCCcce-e--c--CCCccccccHHHHHHHHHHHhcc
Q 009060 299 IVESADAYVFVGPIFNDYSSVGYSLLI-KKEKAIIVQPHRVT-V--G--NGPSLGWVFMADFLSALAKKLRK 364 (545)
Q Consensus 299 ~l~~aD~vl~lG~~~~~~~~~~~~~~~-~~~~~i~id~d~~~-~--~--~~~~~~~~d~~~~l~~L~~~l~~ 364 (545)
.+.++|++|++|+++.-+....+.... .+.++|.|+.++.. + . .....-..++..+|..|.+.+..
T Consensus 216 ~~~~aDllLviGTSl~V~Paa~l~~~~~~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg~ 287 (361)
T 1q14_A 216 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGW 287 (361)
T ss_dssp ---CCCEEEEESCCCCSTTGGGHHHHSCTTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHTC
T ss_pred hhccCCEEEEECCCCCchhHHHHHHHHhcCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHcCC
Confidence 356999999999998766554443333 36788999988763 1 1 01122334788999999887754
No 99
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=78.35 E-value=2.9 Score=41.10 Aligned_cols=70 Identities=9% Similarity=-0.071 Sum_probs=45.5
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCcccccccCCC-CCcEEEEcCCcceecCC---------------------CccccccHH
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLLIK-KEKAIIVQPHRVTVGNG---------------------PSLGWVFMA 352 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~---------------------~~~~~~d~~ 352 (545)
.+.+.+.++|++|++|+++.-+....+....+ +...+.||.++...... ...-..|+.
T Consensus 213 ~a~~~~~~aDlllviGTSl~V~P~a~l~~~~~~~~~~v~IN~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~gd~~ 292 (323)
T 1j8f_A 213 CMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECD 292 (323)
T ss_dssp HHHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTTCCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTTCCSEEEEESCHH
T ss_pred HHHHHHhCCCEEEEEeeCcccHHHHHHHHHHHcCCcEEEEeCCCCCCCcccccccccccccccccccccceeEEEeCCHH
Confidence 35567789999999999987655443333333 35567788877644210 011223789
Q ss_pred HHHHHHHHHhcc
Q 009060 353 DFLSALAKKLRK 364 (545)
Q Consensus 353 ~~l~~L~~~l~~ 364 (545)
+++..|.+.+..
T Consensus 293 ~~l~~L~~~lgw 304 (323)
T 1j8f_A 293 QGCLALAELLGW 304 (323)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 999999888764
No 100
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=76.56 E-value=5.1 Score=42.61 Aligned_cols=122 Identities=11% Similarity=-0.062 Sum_probs=72.8
Q ss_pred CCeEEecC---chhHHHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCC------
Q 009060 65 ELNLVGCC---NELNAGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN------ 133 (545)
Q Consensus 65 ~i~~i~~~---hE~~A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~------ 133 (545)
..+++... .=..+.-+|.|.+.+.. +.+|++--|. +.-.+..|..|...+.|+++|.-+.......+.
T Consensus 410 ~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~-~~~~~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~ 488 (566)
T 1ozh_A 410 ARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGG-FLQSSMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKY 488 (566)
T ss_dssp CSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEEEEHHH-HHHHTTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHH
T ss_pred CCeEEeCCCcccccchHHHHHHHHHhCCCCCEEEEEcChH-HhccHHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhc
Confidence 34555433 12235567788777653 5555543332 333357888899999998888866543211100
Q ss_pred -cccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 134 -RILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 134 -~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
........ ..|...+++.+--...++++++++.+.+++|+ ..+||+.|++..+-
T Consensus 489 ~~~~~~~~~---~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~----~~~gp~liev~~~~ 543 (566)
T 1ozh_A 489 QRLSGVEFG---PMDFKAYAESFGAKGFAVESAEALEPTLRAAM----DVDGPAVVAIPVDY 543 (566)
T ss_dssp SSCCSCBCC---CCCHHHHHHTTTSEEEECCSGGGHHHHHHHHH----HSSSCEEEEEEBCC
T ss_pred CCCccCcCC---CCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 00000111 13456777777656678888888877666665 45899999998773
No 101
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=74.65 E-value=17 Score=38.71 Aligned_cols=140 Identities=18% Similarity=0.037 Sum_probs=81.5
Q ss_pred ecCCCChHHHHHhhhcCCCCeEEecC---chhHHHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEE
Q 009060 47 SVPGDFNLTLLDHLIAEPELNLVGCC---NELNAGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICI 121 (545)
Q Consensus 47 g~pG~~~~~l~~al~~~~~i~~i~~~---hE~~A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi 121 (545)
.=.|.........+.-....+++..+ .=..+.-+|.|.+.+.. +.+|++--|. +.-.+.+|..|...+.|+++|
T Consensus 396 ~d~g~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~-~~~~~~~L~ta~~~~l~~~iv 474 (589)
T 2pgn_A 396 TDIGNHTLPMFGGAILQRPRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGA-LYYHFNEFRVAVEHKLPVITM 474 (589)
T ss_dssp ECSSTTHHHHHHHCCCSSTTCEESCTTTCCTTCHHHHHHHHHHHCTTSCEEEEEEHHH-HHHHGGGHHHHHHTTCCCEEE
T ss_pred EcCchHHHHHHHhcccCCCCcEECCCCcchhhhHHHHHHHHHHhCCCCcEEEEEeeHH-HHhhHHHHHHHHHhCCCeEEE
Confidence 33344434444444322235566543 22336667888877753 5666654443 333368888999999998888
Q ss_pred eCCCCCcccCCC-------cccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 122 VGGPNSNDYGTN-------RILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 122 ~g~~~~~~~~~~-------~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
.-+.......+. ......+.. .|...+++.+--...++++++++.+.+++|+. .+||+.|++..+-
T Consensus 475 v~nN~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~----~~gp~liev~~~~ 547 (589)
T 2pgn_A 475 VFTNESYGANWTLMNHQFGQNNWTEFMN---PDWVGIAKAFGAYGESVRETGDIAGALQRAID----SGKPALIEIPVSK 547 (589)
T ss_dssp EEECSBCHHHHHHHHHHHSSCCSCBCCC---CCHHHHHHHHTCEEEECTTTCCHHHHHHHHHH----HCSCEEEEEECCS
T ss_pred EEECCCcccchHHHHhhcCCCccccCCC---CCHHHHHHHCCCeEEEECCHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 866543211000 000001111 24566777775566789998888777777764 4799999998874
No 102
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=74.36 E-value=6.4 Score=41.41 Aligned_cols=148 Identities=16% Similarity=0.088 Sum_probs=80.3
Q ss_pred cCCCEEE-ecCCCChHHHHHhhhcCCCCeEEecCc--hhHHHHHHhHHhhhcC--ceEEEEcCCcchH-HHHHHHHHhHh
Q 009060 40 IGAKDVF-SVPGDFNLTLLDHLIAEPELNLVGCCN--ELNAGYAADGYARSRG--VGACVVTFTVGGL-SVLNAIAGAYS 113 (545)
Q Consensus 40 ~GV~~vF-g~pG~~~~~l~~al~~~~~i~~i~~~h--E~~A~~~A~gyar~tg--~gv~~~t~GpG~~-n~~~~l~~A~~ 113 (545)
..=+.++ .=.|.....+...+.-....+++..+. =..+.-+|.|.+.+.. +.+|++ |=|.. -.+.++..|..
T Consensus 366 l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~gg~~G~~l~~A~G~a~a~~~~~vv~~~--GDG~~~~~~~~l~~a~~ 443 (528)
T 1q6z_A 366 APENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVI--GDGSANYSISALWTAAQ 443 (528)
T ss_dssp SCTTCEEEEECTTSHHHHHHHCCCCSSSCEEECTTCCTTSHHHHHHHHHHHCTTSCEEEEE--EHHHHTTTGGGHHHHHH
T ss_pred CCCCeEEEECCcccHHHHHHhccccCCCcEECCCCccccchHHHHHHHHHhCCCCcEEEEE--CCcHHHhhHHHHHHHHH
Confidence 3334444 445555544444343222355666554 1234457788777754 455554 44433 23688888889
Q ss_pred cCCcEEEEeCCCCCcccCCCc--cc--ccccCCC-ChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEE
Q 009060 114 ENLPVICIVGGPNSNDYGTNR--IL--HHTIGLP-DFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYI 188 (545)
Q Consensus 114 ~~~Pllvi~g~~~~~~~~~~~--~~--~~~~~~~-~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l 188 (545)
.+.|+++|.-+.......+.. .. ....+.. ...|...+++.+--...++++++++.+ |++.+...+||+.|
T Consensus 444 ~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~----al~~a~~~~gp~li 519 (528)
T 1q6z_A 444 YNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKG----SLQEALSAKGPVLI 519 (528)
T ss_dssp HTCCCEEEEEECSBCHHHHHHHHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEESSHHHHHH----HHHHHHTCSSCEEE
T ss_pred hCCCeEEEEEeCCcchHhHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeCCHHHHHH----HHHHHHHCCCcEEE
Confidence 999999888654422110000 00 0000000 012455677777555668888766554 45555556899999
Q ss_pred EeCCC
Q 009060 189 SISCN 193 (545)
Q Consensus 189 ~iP~d 193 (545)
++..+
T Consensus 520 ev~~~ 524 (528)
T 1q6z_A 520 EVSTV 524 (528)
T ss_dssp EEEBC
T ss_pred EEEec
Confidence 98766
No 103
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=73.01 E-value=27 Score=37.25 Aligned_cols=153 Identities=15% Similarity=0.099 Sum_probs=83.1
Q ss_pred HHcCCCEEEecCCC-ChHHHHHhhhcCCCCeEEecCc---hhHHHHHHhHHhhhcC--ceEEEEcCCcchH-HHHHHHHH
Q 009060 38 VEIGAKDVFSVPGD-FNLTLLDHLIAEPELNLVGCCN---ELNAGYAADGYARSRG--VGACVVTFTVGGL-SVLNAIAG 110 (545)
Q Consensus 38 ~~~GV~~vFg~pG~-~~~~l~~al~~~~~i~~i~~~h---E~~A~~~A~gyar~tg--~gv~~~t~GpG~~-n~~~~l~~ 110 (545)
+..+=+.++....+ +.......+.-....+++.... =..+.-+|.|.+.+.. +.+|++ |=|.. -.+..|..
T Consensus 382 ~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~l~~A~Gaala~~~~~vv~~~--GDG~~~~~~~~l~~ 459 (603)
T 4feg_A 382 KIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLA--GDGGASMTMQDLAT 459 (603)
T ss_dssp HHCCTTCEEEECSSHHHHHHHHHCCCCTTCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEE--EHHHHHHHGGGHHH
T ss_pred HhCCCCCEEEECCchHHHHHHHhceeCCCCceecCcccccccchhHHHhhHHHhCCCCcEEEEe--ccHHHhhhHHHHHH
Confidence 33444556555333 3223333343223445554331 1235567888777653 455554 44433 33567888
Q ss_pred hHhcCCcEEEEeCCCCCcccCCCc---cccc-ccCCC-ChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCc
Q 009060 111 AYSENLPVICIVGGPNSNDYGTNR---ILHH-TIGLP-DFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKP 185 (545)
Q Consensus 111 A~~~~~Pllvi~g~~~~~~~~~~~---~~~~-~~~~~-~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GP 185 (545)
|...+.|+++|.-+......-+.. .... ..+.. ...|...+++.+--...++.+++++.+.+++|+. ...+||
T Consensus 460 a~~~~lp~~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~--~~~~gP 537 (603)
T 4feg_A 460 QVQYHLPVINVVFTNCQYGFIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQAKA--IAQHEP 537 (603)
T ss_dssp HHHTTCCCEEEEEECSBCHHHHHHHHHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEECBGGGHHHHHHHHHH--HTTTSC
T ss_pred HHHHCcCeEEEEEECCchHHHHHHHHHhcCCCcccCcCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHH--hcCCCc
Confidence 889999999888665422110000 0000 00000 1124566777775556788888887776666653 156899
Q ss_pred EEEEeCCCC
Q 009060 186 VYISISCNL 194 (545)
Q Consensus 186 V~l~iP~dv 194 (545)
++|++..+-
T Consensus 538 ~lIev~~~~ 546 (603)
T 4feg_A 538 VLIDAVITG 546 (603)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEeCC
Confidence 999998863
No 104
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=72.58 E-value=4.9 Score=42.72 Aligned_cols=111 Identities=17% Similarity=0.092 Sum_probs=63.3
Q ss_pred HHHHHHhHHhhhcC--ceEEEEcCCcch-HHHHHHHHHhHhcCCcEEEEeCCCCCcccCCCccccc-ccCCCChHHHHHH
Q 009060 76 NAGYAADGYARSRG--VGACVVTFTVGG-LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHH-TIGLPDFTQELRC 151 (545)
Q Consensus 76 ~A~~~A~gyar~tg--~gv~~~t~GpG~-~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~-~~~~~~~~d~~~~ 151 (545)
.+.-+|.|.+.+.. +.+|++ |=|. .-.+..+..|...+.|+++|.-+.......+. +++ ........|...+
T Consensus 417 ~~l~~A~G~ala~~~~~vv~i~--GDGs~~~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~--~~~~~~~~~~~~d~~~~ 492 (568)
T 2wvg_A 417 WSVPAAFGYAVGAPERRNILMV--GDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVM--IHDGPYNNIKNWDYAGL 492 (568)
T ss_dssp THHHHHHHHHHHCTTSEEEEEE--EHHHHHHHGGGHHHHHHTTCCCEEEEEECSSCHHHHT--TSCCGGGCCCCCCHHHH
T ss_pred hHHHHHHHHHHhCCCCcEEEEE--cChhHhccHHHHHHHHHcCCCcEEEEEECCcceEeee--eccCCCcCCCCCCHHHH
Confidence 35567788777653 555554 4443 33467788888899998877755432211110 000 0000111234556
Q ss_pred hhhcee---------EEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 152 FQAITC---------SQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 152 ~~~~~k---------~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
++.+-- ...++++.+++.+.+++|+.. .+||+.|++..+
T Consensus 493 a~a~G~~~~~~~~~~~~~~v~~~~el~~al~~a~~~---~~gp~liev~~~ 540 (568)
T 2wvg_A 493 MEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALAN---TDGPTLIECFIG 540 (568)
T ss_dssp HHHHHCTTSSSCCCCEEEEESBHHHHHHHHHHHHHC---CSSCEEEEEECC
T ss_pred HHHhCCCcccccCCcceEEeCCHHHHHHHHHHHHhc---CCCcEEEEEEcC
Confidence 666543 566888877766666555432 279999999877
No 105
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=72.07 E-value=8 Score=41.08 Aligned_cols=113 Identities=14% Similarity=0.004 Sum_probs=68.6
Q ss_pred HHHHHHhHHhhhcC-ceEEEEcCCcchHHH-HHHHHHhHhcCCcEEEEeCCCCCcccCCCcc--cccccCC-CChHHHHH
Q 009060 76 NAGYAADGYARSRG-VGACVVTFTVGGLSV-LNAIAGAYSENLPVICIVGGPNSNDYGTNRI--LHHTIGL-PDFTQELR 150 (545)
Q Consensus 76 ~A~~~A~gyar~tg-~gv~~~t~GpG~~n~-~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~--~~~~~~~-~~~~d~~~ 150 (545)
.+.-+|.|.+.+.+ +.+|++ |=|...+ +..|..|...+.|+++|.-+........... ....... ....|...
T Consensus 430 ~~l~~AiGaala~~~~vv~i~--GDGsf~~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 507 (568)
T 2c31_A 430 IGMGYCVAAAAVTGKPVIAVE--GDSAFGFSGMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVISCTRLTRGRYDM 507 (568)
T ss_dssp CHHHHHHHHHHHHCSCEEEEE--EHHHHHTTGGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTTBCCTTBCCCCCHHH
T ss_pred ccHHHHHHHHhCCCCcEEEEE--cchHhhccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcCCcccCcCCCCCHHH
Confidence 34556777666655 566665 4444332 6788889999999888886654310111000 0000000 01135567
Q ss_pred HhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 151 CFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 151 ~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
+++.+--...++++++++.+.+++|+ ..+||+.|++..+-
T Consensus 508 ~a~a~G~~~~~v~~~~el~~al~~a~----~~~~p~liev~~~~ 547 (568)
T 2c31_A 508 MMEAFGGKGYVANTPAELKAALEEAV----ASGKPCLINAMIDP 547 (568)
T ss_dssp HHHTTTCEEEEESSHHHHHHHHHHHH----HHTSCEEEEEEBCT
T ss_pred HHHHcCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEecc
Confidence 88887666778888887777766665 35799999998873
No 106
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=71.11 E-value=3.7 Score=43.72 Aligned_cols=110 Identities=15% Similarity=0.065 Sum_probs=61.8
Q ss_pred HHHHHHhHHhhhcC--ceEEEEcCCcchH-HHHHHHHHhHhcCCcEEEEeCCCCCcccCCCccccc-ccCCCChHHHHHH
Q 009060 76 NAGYAADGYARSRG--VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHH-TIGLPDFTQELRC 151 (545)
Q Consensus 76 ~A~~~A~gyar~tg--~gv~~~t~GpG~~-n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~-~~~~~~~~d~~~~ 151 (545)
.+.-+|.|.+.+.. +.+|++ |=|.. -.+..+..|...+.|+++|.-+.......+. +++ ........|...+
T Consensus 413 ~~l~~A~G~ala~~~~~vv~~~--GDG~~~~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~--~~~~~~~~~~~~d~~~~ 488 (566)
T 2vbi_A 413 WSVPSAFGNAMGSQDRQHVVMV--GDGSFQLTAQEVAQMVRYELPVIIFLINNRGYVIEIA--IHDGPYNYIKNWDYAGL 488 (566)
T ss_dssp THHHHHHHHHHTCTTSEEEEEE--EHHHHHHHGGGHHHHHHTTCCCEEEEEECSSCHHHHT--TSCCGGGCCCCCCTTTH
T ss_pred hHHHHHHHHHHhCCCCcEEEEE--cchHHHhhHHHHHHHHHhCCCcEEEEEECCcceEEEe--eccCCccCCCCCCHHHH
Confidence 35557778777653 455554 44433 2357788888899998877765432211110 000 0000001133445
Q ss_pred hhhcee-----EEEEeCChhhHHHHHHHHHHHhhhC-CCcEEEEeCCC
Q 009060 152 FQAITC-----SQAVVNNLGDAHELIDTAISTALKE-SKPVYISISCN 193 (545)
Q Consensus 152 ~~~~~k-----~~~~v~~~~~~~~~l~~A~~~a~~~-~GPV~l~iP~d 193 (545)
++.+-- ...++++++++.+.+++| ... +||+.|++..+
T Consensus 489 a~a~G~~~~~~~~~~v~~~~el~~al~~a----~~~~~gp~liev~~~ 532 (566)
T 2vbi_A 489 MEVFNAGEGHGLGLKATTPKELTEAIARA----KANTRGPTLIECQID 532 (566)
T ss_dssp HHHHHTTTCCCEEEEECSHHHHHHHHHHH----HHCCSSCEEEEEECC
T ss_pred HHHcCCCCCCccEEEeCCHHHHHHHHHHH----HhcCCCcEEEEEEeC
Confidence 555533 566788877665555554 444 79999999877
No 107
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=70.48 E-value=17 Score=38.49 Aligned_cols=159 Identities=14% Similarity=0.033 Sum_probs=86.4
Q ss_pred ccHHHHHHHHHHHcC--CCE-EEecCCCChHHHHHhhhcCCCCeEEecC---chhHHHHHHhHHhhhcC--ceEEEEcCC
Q 009060 27 GTLGRHLARRLVEIG--AKD-VFSVPGDFNLTLLDHLIAEPELNLVGCC---NELNAGYAADGYARSRG--VGACVVTFT 98 (545)
Q Consensus 27 ~~~a~~i~~~L~~~G--V~~-vFg~pG~~~~~l~~al~~~~~i~~i~~~---hE~~A~~~A~gyar~tg--~gv~~~t~G 98 (545)
....+.|.+.|.+.. -+. ++.=.|.........+.-...-+++... .=..+.-+|.|.+.+.. +.+|++--|
T Consensus 385 ~~~~~~l~~~l~~~~~~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaa~a~~~~~vv~i~GDG 464 (573)
T 2iht_A 385 HQVIDSMNTVMEEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDG 464 (573)
T ss_dssp HHHHHHHHHHHHHHSCTTCCEEEECSSHHHHHHHHHCCCCSTTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEEEEHH
T ss_pred HHHHHHHHHhcccccCCCCcEEEEcCcHhHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEccH
Confidence 345566666665410 023 3333344333333333222234566432 23336668888887753 556665333
Q ss_pred cchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCC-------cccc--cccCCCChHHHHHHhhhceeEEEEeCChhhHH
Q 009060 99 VGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN-------RILH--HTIGLPDFTQELRCFQAITCSQAVVNNLGDAH 169 (545)
Q Consensus 99 pG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~-------~~~~--~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~ 169 (545)
. +.-.+.+|..|...+.|+++|.-+.......+. .... ..+.. .|...+++.+--...++++++++.
T Consensus 465 ~-~~~~~~~L~~a~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~a~a~G~~~~~v~~~~~l~ 540 (573)
T 2iht_A 465 G-FHSNSSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGG---VDFVALAEANGVDATRATNREELL 540 (573)
T ss_dssp H-HHHTGGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSSCCGGGTBCCC---CCHHHHHHHTTCEEEECCSHHHHH
T ss_pred H-HHhHHHHHHHHHHhCCCeEEEEEECCcchhhHHHHHHhcCCCcCccccCCC---CCHHHHHHHcCCeEEEeCCHHHHH
Confidence 2 333367888899999998877765442211000 0000 01111 245667777755567788876665
Q ss_pred HHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 170 ELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 170 ~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
+.+++| ...+||+.|++..+
T Consensus 541 ~al~~a----~~~~gp~liev~~~ 560 (573)
T 2iht_A 541 AALRKG----AELGRPFLIEVPVN 560 (573)
T ss_dssp HHHHHH----HTSSSCEEEEEEBC
T ss_pred HHHHHH----HhCCCCEEEEEECC
Confidence 555544 45689999999877
No 108
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=69.38 E-value=21 Score=37.64 Aligned_cols=156 Identities=12% Similarity=0.008 Sum_probs=82.6
Q ss_pred HHHHHHHc-CCCEEEecC-CCChHHHHHhhhcCCCCeEEecC---chhHHHHHHhHHhhhc---C-ceEEEEcCCcchHH
Q 009060 33 LARRLVEI-GAKDVFSVP-GDFNLTLLDHLIAEPELNLVGCC---NELNAGYAADGYARSR---G-VGACVVTFTVGGLS 103 (545)
Q Consensus 33 i~~~L~~~-GV~~vFg~p-G~~~~~l~~al~~~~~i~~i~~~---hE~~A~~~A~gyar~t---g-~gv~~~t~GpG~~n 103 (545)
+++.|.+. .=+.++..- |...+.....+.-...-+++..+ .=..+.-+|.|.+.+. + +.+|++--|. +.-
T Consensus 375 ~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~~G~~l~~AiGaa~a~~~~~~~vv~i~GDG~-~~~ 453 (563)
T 2uz1_A 375 ASQVIAKHVDAGVTVVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGS-VGY 453 (563)
T ss_dssp HHHHHHTTCSTTEEEEECSSHHHHHHHHHHTTSCCSEEECCCTTCCTTTHHHHHHHHHHHHHHHTCEEEEEEEHHH-HGG
T ss_pred HHHHHHHhCCCCcEEEEcCchHHHHHHHhccccCCCeEECCCCCccccChHHHHHHHHHHhhCCCCeEEEEEccHH-HhC
Confidence 44444432 334454443 33233334333322234555432 2234555777777665 3 5556553333 233
Q ss_pred HHHHHHHhHhcCCcEEEEeCCCCCcccCCC-c-ccc---cccCCC-ChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHH
Q 009060 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTN-R-ILH---HTIGLP-DFTQELRCFQAITCSQAVVNNLGDAHELIDTAIS 177 (545)
Q Consensus 104 ~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~-~-~~~---~~~~~~-~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~ 177 (545)
.+.++..|...+.|+++|.-+.......+. . ..+ ...+.. ...|...+++.+--...++++++++.+.+++|+
T Consensus 454 ~~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~- 532 (563)
T 2uz1_A 454 SIGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNRVTGTRLENGSYHGVAAAFGADGYHVDSVESFSAALAQAL- 532 (563)
T ss_dssp GTTHHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCTTCCCSCBCCCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCcCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHH-
Confidence 367888899999998887765432211000 0 000 001000 112456677777556678888777766666554
Q ss_pred HhhhCCCcEEEEeCCC
Q 009060 178 TALKESKPVYISISCN 193 (545)
Q Consensus 178 ~a~~~~GPV~l~iP~d 193 (545)
..+||+.|++..+
T Consensus 533 ---~~~gp~liev~~~ 545 (563)
T 2uz1_A 533 ---AHNRPACINVAVA 545 (563)
T ss_dssp ---HSSSCEEEEEECC
T ss_pred ---HCCCCEEEEEEec
Confidence 4689999999887
No 109
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=68.55 E-value=39 Score=36.61 Aligned_cols=109 Identities=13% Similarity=0.095 Sum_probs=66.5
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchH-HHHHHHHHhHhcCCcEEEEeCCCCCcccCC--------CcccccccCCCCh
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGT--------NRILHHTIGLPDF 145 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~-n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~--------~~~~~~~~~~~~~ 145 (545)
+.-+|.|.+.+.. +.+|++ |=|.. -.+..|..|...+.|+++|.-+......-+ +...+..+. .
T Consensus 518 ~lpaAiGaalA~p~~~Vv~i~--GDGsf~~~~~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~~~~~~~~~~~---~ 592 (677)
T 1t9b_A 518 GLPAAIGAQVAKPESLVIDID--GDASFNMTLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQL---N 592 (677)
T ss_dssp HHHHHHHHHHHCTTSEEEEEE--EHHHHHHHGGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCC---C
T ss_pred hHHHHHHHHHhCCCCeEEEEE--eehHHhccHHHHHHHHHhCCCeEEEEEeCCCchhhhhhhhhhcCCCcccCcCC---C
Confidence 6678888877754 445554 44433 235778889999999887776544321000 000000011 1
Q ss_pred HHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 146 TQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 146 ~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
.|...+++.+--...++++++++.+.+++|+ ...||+.|++..+-
T Consensus 593 ~d~~~la~a~G~~~~~v~~~~el~~al~~a~----~~~gp~lIev~~~~ 637 (677)
T 1t9b_A 593 PDFIKLAEAMGLKGLRVKKQEELDAKLKEFV----STKGPVLLEVEVDK 637 (677)
T ss_dssp CCHHHHHHHTTCEEEEECSHHHHHHHHHHHH----HCSSCEEEEEEBCS
T ss_pred CCHHHHHHHcCCeEEEECCHHHHHHHHHHHH----HCCCcEEEEEEecC
Confidence 2456777777666678888777766665554 45799999998874
No 110
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=68.30 E-value=9.6 Score=40.41 Aligned_cols=112 Identities=16% Similarity=0.075 Sum_probs=67.8
Q ss_pred HHHHHHhHHhhhcC-ceEEEEcCCcchH-HHHHHHHHhHhcCCcEEEEeCCCCCc--ccCCC----cccccccCCCChHH
Q 009060 76 NAGYAADGYARSRG-VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSN--DYGTN----RILHHTIGLPDFTQ 147 (545)
Q Consensus 76 ~A~~~A~gyar~tg-~gv~~~t~GpG~~-n~~~~l~~A~~~~~Pllvi~g~~~~~--~~~~~----~~~~~~~~~~~~~d 147 (545)
.+.-+|.|.+.+.+ +.+|++ |=|.. -.+..+..|...+.|+++|.-+.... ..... ....... .....|
T Consensus 425 ~~l~~AiGaa~a~~~~vv~i~--GDGsf~~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~-~~~~~d 501 (564)
T 2q28_A 425 IGMGYAIGASVTSGSPVVAIE--GDSAFGFSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAPSPTD-LLHHAR 501 (564)
T ss_dssp CHHHHHHHHHHHHCSCEEEEE--EHHHHHTTGGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCCCCTTB-CCTTCC
T ss_pred chHHHHHHHhhcCCCcEEEEE--cchHhhccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCCccccc-cCCCCC
Confidence 35667777777655 666665 43333 22477888999999988888665431 11100 0000000 000124
Q ss_pred HHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 148 ~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
...+++.+--...++++++++.+.+++|+ ..+||+.|++..+-
T Consensus 502 ~~~~a~a~G~~~~~v~~~~el~~al~~a~----~~~~p~liev~~~~ 544 (564)
T 2q28_A 502 YDKLMDAFRGVGYNVTTTDELRHALTTGI----QSRKPTIINVVIDP 544 (564)
T ss_dssp GGGGGGGGTCEEEEECSHHHHHHHHHHHH----HHTSCEEEEEEBCT
T ss_pred HHHHHHHcCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEecc
Confidence 56677777656778888887777766665 34789999998873
No 111
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=68.28 E-value=25 Score=34.89 Aligned_cols=96 Identities=17% Similarity=0.166 Sum_probs=54.0
Q ss_pred EEEcCCcchHH---HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeC--Chhh
Q 009060 93 CVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN--NLGD 167 (545)
Q Consensus 93 ~~~t~GpG~~n---~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~--~~~~ 167 (545)
+++..|=|.++ ..-++..|...+.|+++|.-+.... .... ........+ ...+++.+--...++. ++..
T Consensus 169 vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~g-i~~~--~~~~~~~~d---~~~~a~a~G~~~~~Vdg~d~~a 242 (367)
T 1umd_A 169 AVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYA-ISVD--YRHQTHSPT---IADKAHAFGIPGYLVDGMDVLA 242 (367)
T ss_dssp EEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEE-TTEE--HHHHCSSSC---SGGGGGGTTSCEEEEETTCHHH
T ss_pred EEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCee-eccC--hhhccCCCC---HHHHHHHcCCcEEEeCCCCHHH
Confidence 33344655553 2235777888999998888654311 1110 000011112 2344555432333454 4455
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 168 AHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 168 ~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
+.+.+++|++.+...+||+.|++-..-
T Consensus 243 v~~a~~~A~~~a~~~~gP~lIe~~t~r 269 (367)
T 1umd_A 243 SYYVVKEAVERARRGEGPSLVELRVYR 269 (367)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEEECCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEeec
Confidence 677778888888777899999987664
No 112
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=67.47 E-value=2.4 Score=45.59 Aligned_cols=124 Identities=11% Similarity=0.015 Sum_probs=70.4
Q ss_pred CCeEEecCch---hHHHHHHhHHhhhcC-ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCCC-c-----
Q 009060 65 ELNLVGCCNE---LNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN-R----- 134 (545)
Q Consensus 65 ~i~~i~~~hE---~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~-~----- 134 (545)
..+++..+.= ..+.-+|.|.+.+.+ +.+|++--|. +.-.+..|..|...+.|+++|.-+.......+. +
T Consensus 445 ~~~~~~~~G~~~ig~~l~~AiGaala~~~~vv~i~GDGs-f~~~~~eL~ta~~~~lp~~ivv~NN~~~~i~~~~~~~q~~ 523 (604)
T 2x7j_A 445 PFRIYSNRGANGIDGVVSSAMGVCEGTKAPVTLVIGDLS-FYHDLNGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEK 523 (604)
T ss_dssp CCEEECCTTTCCSSSHHHHHHHHHHHHTSCEEEEEEHHH-HHHTGGGGHHHHHHCCCEEEEEEECSSCGGGGGSGGGSCH
T ss_pred CceEEeCCCcCCcCcHHHHHHHHHhcCCCcEEEEEccHH-HHhHHHHHHHhhhcCCCeEEEEEeCCCCcccccCCCCccc
Confidence 3456544321 135567788777765 6666654333 222357788899999998888765433211000 0
Q ss_pred -ccccccCCCChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 135 -ILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 135 -~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
............|...+++.+--...++++++++ +.|++.+...+||+.|++..+
T Consensus 524 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el----~~al~~a~~~~gp~liev~~~ 579 (604)
T 2x7j_A 524 THFEDLFGTPTGLDFKHAAALYGGTYSCPASWDEF----KTAYAPQADKPGLHLIEIKTD 579 (604)
T ss_dssp HHHHHHTTCCCCCCTHHHHHHTTCEEECCSSHHHH----HHHCCCCCSSCCEEEEEEECC
T ss_pred hhhHhhccCCCCCCHHHHHHHcCCeEEecCCHHHH----HHHHHHHHhCCCCEEEEEECC
Confidence 0000011000124456677775556778776654 555665666689999999876
No 113
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=63.03 E-value=43 Score=35.49 Aligned_cols=117 Identities=21% Similarity=0.116 Sum_probs=68.4
Q ss_pred chhHHHHHHhHHhhhcC--ceEEEEcCCcchHHHHHHHHHhHhcCCcEEEEeCCCCCcccCC--------CcccccccCC
Q 009060 73 NELNAGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGT--------NRILHHTIGL 142 (545)
Q Consensus 73 hE~~A~~~A~gyar~tg--~gv~~~t~GpG~~n~~~~l~~A~~~~~Pllvi~g~~~~~~~~~--------~~~~~~~~~~ 142 (545)
.-..+.-+|.|.+.+.. +.+|++--|. +.-.+.+|..|...+.|+++|.-+.......+ .......++.
T Consensus 427 ~~G~~l~~AiGaala~~~~~vv~i~GDGs-~~~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (590)
T 1ybh_A 427 AMGFGLPAAIGASVANPDAIVVDIDGDGS-FIMNVQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKANRAHTFLGD 505 (590)
T ss_dssp CTTCHHHHHHHHHHHCTTSCEEEEEEHHH-HHHTTTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTTCCCSCBCSC
T ss_pred cccchHHHHHHHHHhCCCCcEEEEEccch-hhccHHHHHHHHHhCCCcEEEEEECCcchHHHHHHHHhcCCccccccccc
Confidence 33447778889887764 5566553333 33336788889999999888876543221100 0000000100
Q ss_pred C-----ChHHHHHHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCCC
Q 009060 143 P-----DFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (545)
Q Consensus 143 ~-----~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~dv 194 (545)
+ ...|...+++.+--...++++++++.+.+++| ...+||+.|++..+-
T Consensus 506 p~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a----~~~~gp~liev~~~~ 558 (590)
T 1ybh_A 506 PAQEDEIFPNMLLFAAACGIPAARVTKKADLREAIQTM----LDTPGPYLLDVICPH 558 (590)
T ss_dssp GGGTTSCSSCHHHHHHHTTCCEEEECBHHHHHHHHHHH----HHSSSCEEEEEECCT
T ss_pred cccccCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHH----HhCCCCEEEEEEecC
Confidence 0 01245667777755556888776665555554 445899999998874
No 114
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2}
Probab=62.83 E-value=5.1 Score=38.67 Aligned_cols=101 Identities=15% Similarity=0.164 Sum_probs=63.8
Q ss_pred HHHHHHHhCCceEeCCC--CccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCCcEEE
Q 009060 255 FIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAII 332 (545)
Q Consensus 255 l~~lae~~~~Pv~tt~~--~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~ 332 (545)
+.--|-+.++|++-... -.|-+|+.+....- .-...++.++++|.||.+.+.|.+..+++.. +...+++.
T Consensus 230 Imy~cvk~~VPfVLAGSIRDDGPLPdvitdv~~------AQ~~mr~~~~~a~~vimlaTmLHSIAtGNm~--Ps~v~~~c 301 (345)
T 3c2q_A 230 IMYQCIKNNIPYVLAGSIRDDGPIPDVITDSMV------AQDKMRTTVMDKKMVIMLSTLLHSVATGNLM--PSYIKTVC 301 (345)
T ss_dssp HHHHHHHTTCCEEEECCTTCSSCCTTCBCBHHH------HHHHHHHHHTTCSEEEEESCHHHHHHHHTTC--CTTSEEEE
T ss_pred hHHHHHhCCCCEEEEeeccCCCCCCcccccHHH------HHHHHHHHhccCCchHHHHHHHHHHHhcccC--cccceEEE
Confidence 33446788999886432 33444443332111 1134456788999999999998777776654 23457999
Q ss_pred EcCCcceecC---CCc---ccc-ccHHHHHHHHHHHhc
Q 009060 333 VQPHRVTVGN---GPS---LGW-VFMADFLSALAKKLR 363 (545)
Q Consensus 333 id~d~~~~~~---~~~---~~~-~d~~~~l~~L~~~l~ 363 (545)
||+++....+ +-. .+- -|+.+||..|.+.|.
T Consensus 302 VDInp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~L~ 339 (345)
T 3c2q_A 302 VDIQPSTVTKLMDRGTSQAIGVVTDVGVFLVLLLKELE 339 (345)
T ss_dssp EESCHHHHHHHHHTCCSSEEEEESCHHHHHHHHHHHHH
T ss_pred EECCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHH
Confidence 9999875531 111 111 289999999987774
No 115
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=59.63 E-value=5.1 Score=32.19 Aligned_cols=32 Identities=9% Similarity=0.080 Sum_probs=28.0
Q ss_pred CCCEEEcCccccccchHHHHHHHHHHhCCceE
Q 009060 236 VKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (545)
Q Consensus 236 ~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~ 267 (545)
+|.++++|.|...+-..+.+++.+++.|+++-
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~ 35 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVI 35 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSEE
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCeE
Confidence 46889999999888777899999999999973
No 116
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=59.57 E-value=13 Score=41.33 Aligned_cols=80 Identities=19% Similarity=-0.031 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHhcC--CCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHH
Q 009060 220 GLEAAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCG 297 (545)
Q Consensus 220 ~~~~~i~~~~~~l~~a~--rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~ 297 (545)
+.+++++.+++.|++.+ ...++.|... ..+..-.+.+|++.+|.+.+.......... .+ ..+. ..
T Consensus 321 SWdeAl~~ia~~L~~i~~~~i~~~~s~~~-t~E~~~~~~kl~~~lGt~n~d~~~~~~~~~------~~----~~~~-~~- 387 (783)
T 3i9v_3 321 TWEEAFLALKEGLKEARGEEVGLYLAHDA-TLEEGLLASELAKALKTPHLDFQGRTAAPA------SL----FPPA-SL- 387 (783)
T ss_dssp CHHHHHHHHHHHHHTCCTTSEEEEECTTC-CTTHHHHHHHHHHHTTCSCEEETTCCSSCG------GG----SCBC-CH-
T ss_pred CHHHHHHHHHHHHHhhccCCEEEEECCCC-CHHHHHHHHHHHHHhCCCcccCCchhhhhh------cc----CCCC-CH-
Confidence 45778888899998765 3444444433 334556789999999988765432111100 01 1111 11
Q ss_pred HHhhcCCEEEEeCCCC
Q 009060 298 EIVESADAYVFVGPIF 313 (545)
Q Consensus 298 ~~l~~aD~vl~lG~~~ 313 (545)
.-+.++|+||++| .+
T Consensus 388 ~di~~ad~Il~~G-Np 402 (783)
T 3i9v_3 388 EDLLQADFALVLG-DP 402 (783)
T ss_dssp HHHHHCSCEEEES-CH
T ss_pred HHHhhCCEEEEeC-Ch
Confidence 2247999999999 75
No 117
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=58.05 E-value=8.7 Score=40.60 Aligned_cols=108 Identities=11% Similarity=0.037 Sum_probs=63.8
Q ss_pred HHHHHHhHHhhhcC--ceEEEEcCCcchH-HHHHHHHHhHhcCCcEEEEeCCCCCccc-----CCCcccccccCCCChHH
Q 009060 76 NAGYAADGYARSRG--VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDY-----GTNRILHHTIGLPDFTQ 147 (545)
Q Consensus 76 ~A~~~A~gyar~tg--~gv~~~t~GpG~~-n~~~~l~~A~~~~~Pllvi~g~~~~~~~-----~~~~~~~~~~~~~~~~d 147 (545)
.+.-+|.|.+.+.. +.+|++ |=|.. -.+..+..|...+.|+++|.-+...... +..... ..+. ..|
T Consensus 412 ~~l~~A~G~a~a~~~~~vv~~~--GDG~~~~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~-~~~~---~~d 485 (552)
T 1ovm_A 412 YTLAAAFGAQTACPNRRVIVLT--GDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRY-NDIA---LWN 485 (552)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEE--EHHHHHHHTTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGG-GCCC---CCC
T ss_pred hHHHHHHHHHHhCCCCcEEEEE--CchHHHhHHHHHHHHHHhCCCCEEEEEECCCCeEEEeeccCCCCc-ccCC---CCC
Confidence 35557778777653 555554 44433 3367788888999998888765442211 110000 0011 123
Q ss_pred HHHHhhhcee----EEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 148 ELRCFQAITC----SQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 148 ~~~~~~~~~k----~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
...+++.+-- ...++++++++.+ |++.+...+||+.|++..+
T Consensus 486 ~~~~a~a~G~~~~~~~~~v~~~~~l~~----al~~a~~~~gp~liev~~~ 531 (552)
T 1ovm_A 486 WTHIPQALSLDPQSECWRVSEAEQLAD----VLEKVAHHERLSLIEVMLP 531 (552)
T ss_dssp GGGSTTTSCSSCCEEEEEECBHHHHHH----HHHHHTTCSSEEEEEEECC
T ss_pred HHHHHHHhCCCcCCCEEEeCCHHHHHH----HHHHHHhCCCCEEEEEEcC
Confidence 4556777644 5678887766655 4444555689999999877
No 118
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=57.30 E-value=7.5 Score=41.26 Aligned_cols=107 Identities=12% Similarity=0.001 Sum_probs=62.7
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchHHH-HHHHHHhHhcCCcEEEEeCCCCCcccCC----CcccccccCCCChHHHH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGLSV-LNAIAGAYSENLPVICIVGGPNSNDYGT----NRILHHTIGLPDFTQEL 149 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n~-~~~l~~A~~~~~Pllvi~g~~~~~~~~~----~~~~~~~~~~~~~~d~~ 149 (545)
+.-+|.|.+.+.. +.+|++ |=|...+ +..+..|...+.|+++|.-+......-+ ..... .+. ..|..
T Consensus 427 ~l~~A~G~ala~~~~~vv~i~--GDG~~~~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~-~~~---~~d~~ 500 (565)
T 2nxw_A 427 GVPAGIGAQCVSGGKRILTVV--GDGAFQMTGWELGNCRRLGIDPIVILFNNASWEMLRTFQPESAFN-DLD---DWRFA 500 (565)
T ss_dssp HHHHHHHHHHHTTTCCEEEEE--EHHHHHHHGGGGGGHHHHTCCCEEEEEECSBCHHHHHHCTTCGGG-BCC---CCCHH
T ss_pred cchHHHHHHHhCCCCcEEEEE--echHHHhhHHHHHHHHHhCCCCEEEEEECCCCcEEeeecccCCCC-cCC---CCCHH
Confidence 4456888776653 555554 5554442 3567777888999887775543221100 00000 111 12456
Q ss_pred HHhhhceeEEEEeCChhhHHHHHHHHHHHhhhCCCcE-EEEeCCC
Q 009060 150 RCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPV-YISISCN 193 (545)
Q Consensus 150 ~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV-~l~iP~d 193 (545)
.+++.+--...++++++++.+.+++| ...+||+ .|++..+
T Consensus 501 ~~a~a~G~~~~~v~~~~el~~al~~a----~~~~gp~~liev~~~ 541 (565)
T 2nxw_A 501 DMAAGMGGDGVRVRTRAELKAALDKA----FATRGRFQLIEAMIP 541 (565)
T ss_dssp HHTGGGTSEEEEECBHHHHHHHHHHH----HHCCSSCEEEEEECC
T ss_pred HHHHHcCCCEEEeCCHHHHHHHHHHH----HhcCCCeEEEEEEcc
Confidence 77787765667888876665555554 4457888 9998877
No 119
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=54.98 E-value=6.1 Score=43.32 Aligned_cols=115 Identities=15% Similarity=0.101 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHhc------CCCEEEcCccccccchHHHHHHHHH-HhCCceEeCCCCccCCCCC--CCCccceecCCC
Q 009060 221 LEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELAD-ATGYPIAIMPSGKGLVPEH--HPHFIGTYWGAV 291 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a------~rpvi~~G~g~~~~~a~~~l~~lae-~~~~Pv~tt~~~kg~~~~~--hpl~~G~~~G~~ 291 (545)
-+++++.+++.|++. +...++.|.+....+....+.+|++ .+|.+-+.+...-...+.. ....+|. +..
T Consensus 80 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~e~~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~~~~~G~--~~~ 157 (715)
T 2iv2_X 80 WDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVXHGPSVAGLHQSVGN--GAM 157 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGEEEECCSSTTCHHHHHHHHHHHHHTTCCCCEECSSCCSCCSSSCSHHHHHSC--CSC
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCcCcHHHHHHHHHHHHhcCCCcCCCCCccchhHHHHHHHhhcCC--CCC
Confidence 577888888888764 2333444444331234456789998 9998866543222111111 1112221 111
Q ss_pred CCHHHHHHhhcCCEEEEeCCCCCCCccccccc----CCCCCcEEEEcCCcce
Q 009060 292 SSSFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVT 339 (545)
Q Consensus 292 ~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~~~ 339 (545)
.. . ..-+.++|+||++|+.+.+.....+.. ..++.|+|.||+....
T Consensus 158 ~~-~-~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr~t~ 207 (715)
T 2iv2_X 158 SN-A-INEIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIE 207 (715)
T ss_dssp SS-C-GGGGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred CC-C-HhHHhcCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCCCCc
Confidence 11 1 123589999999998853222111111 1146799999987654
No 120
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=54.10 E-value=65 Score=33.92 Aligned_cols=108 Identities=12% Similarity=0.102 Sum_probs=62.3
Q ss_pred HHHHHhHHhhhcC--ceEEEEcCCcchH-HHHHHHHHhHhcCCcEEEEeCCCCCcccC-----CCcccccccCCCChHHH
Q 009060 77 AGYAADGYARSRG--VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYG-----TNRILHHTIGLPDFTQE 148 (545)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~-n~~~~l~~A~~~~~Pllvi~g~~~~~~~~-----~~~~~~~~~~~~~~~d~ 148 (545)
+.-+|.|.+.+.. +.+|++ |=|.. -.+..|..|...+.|+++|.-+....... .+.... .... .|.
T Consensus 430 ~l~~A~Gaala~~~~~vv~~~--GDG~~~~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~-~~~~---~d~ 503 (570)
T 2vbf_A 430 TFPAALGSQIADKESRHLLFI--GDGSLQLTVQELGLSIREKLNPICFIINNDGYTVEREIHGPTQSYN-DIPM---WNY 503 (570)
T ss_dssp HHHHHHHHHHHCTTSEEEEEE--EHHHHHHHGGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG-CCCC---CCG
T ss_pred hHHHHHHHHHhCCCCcEEEEE--cchhhhcCHHHHHHHHHcCCCCEEEEEECCchHHHHHHhccCCCcc-CCCC---CCH
Confidence 5557778777653 455554 44433 33577888889999988887654332110 000000 0111 233
Q ss_pred HHHhhhce-e----EEEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 149 LRCFQAIT-C----SQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 149 ~~~~~~~~-k----~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
..+++.+- + +..++++++++.+.+++| +...+||+.|++..+
T Consensus 504 ~~~a~a~G~~~~~~~~~~v~~~~el~~al~~a---~~~~~~p~liev~~~ 550 (570)
T 2vbf_A 504 SKLPETFGATEDRVVSKIVRTENEFVSVMKEA---QADVNRMYWIELVLE 550 (570)
T ss_dssp GGHHHHTTCCTTTEEEEEECBHHHHHHHHHHH---HHCTTSEEEEEEECC
T ss_pred HHHHHHcCCCcCCcceEEecCHHHHHHHHHHH---HhcCCCcEEEEEEcC
Confidence 45666653 2 267888877665555543 334578999999877
No 121
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=54.09 E-value=34 Score=28.16 Aligned_cols=88 Identities=17% Similarity=0.142 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhcCC--CEEEcCcccccc-----------chHHHHHHHHHHhCCceEeCCC---CccCCCC-------
Q 009060 222 EAAVEATADFLNKAVK--PVLVGGPNIRVA-----------KAQKAFIELADATGYPIAIMPS---GKGLVPE------- 278 (545)
Q Consensus 222 ~~~i~~~~~~l~~a~r--pvi~~G~g~~~~-----------~a~~~l~~lae~~~~Pv~tt~~---~kg~~~~------- 278 (545)
...++-+..+++.... -+++.+.|+... ...+.+++|++..|+++..-.. .+|+.++
T Consensus 18 ~~al~~a~a~~~~g~~v~~vff~~dGV~~~~~~~~p~~~~~~l~~~~~~L~~~~gv~l~vC~~~~~~RGl~~~~~~~~~~ 97 (130)
T 2hy5_A 18 DSAYQFAKAALEKGHEIFRVFFYHDGVNNSTRLTTPPQDDRHIVNRWAELAEQYELDMVVCVAAAQRRGIVDEGEASRNG 97 (130)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECGGGGGGGBSCCCCCTTSCCHHHHHHHHHHHHTCCEEEEHHHHHHHTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCeeCEEEEechHHHHHhcCCCCCcccCCHHHHHHHHHHHcCCeEEEeHHHHHHcCCChhhhhhhcc
Confidence 3445555555554433 477889888532 3446788999988998887543 5787654
Q ss_pred --CCCCccceecCCCCCHHHHHHhhcCCEEEEeCC
Q 009060 279 --HHPHFIGTYWGAVSSSFCGEIVESADAYVFVGP 311 (545)
Q Consensus 279 --~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~ 311 (545)
.+.+..|.- ..+.....+.+.++|.||.+|.
T Consensus 98 ~~~~~l~~g~~--i~~~~~l~~~~~~aD~vi~f~~ 130 (130)
T 2hy5_A 98 KDATNIHPKFR--ISGLGQLVEAAIQADRLVVFGD 130 (130)
T ss_dssp CSCCCBCTTCE--EECTHHHHHHHHHSSEEEEECC
T ss_pred cccccccCCeE--EeCHHHHHHHHHhCCEEEEeCC
Confidence 124444421 1234577788899999999983
No 122
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=52.64 E-value=5.8 Score=38.22 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=32.5
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCcccccccC--CCCCcEEEEcCCccee
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTV 340 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~ 340 (545)
.+.+.+++||++|++|+++.-+....+... .++.+++.||.++..+
T Consensus 209 ~a~~~~~~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~ 256 (290)
T 3u31_A 209 EAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYI 256 (290)
T ss_dssp HHHHHHHHCSEEEEESCCSCSHHHHHHHHHHHHTTCCEEEEESSCCTT
T ss_pred HHHHHHhcCCEEEEECcCCcchhHHHHHHHHHHcCCEEEEECCCCCCC
Confidence 445667899999999999875544333222 2466899999988755
No 123
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=52.36 E-value=77 Score=35.47 Aligned_cols=175 Identities=15% Similarity=0.085 Sum_probs=89.4
Q ss_pred eEEe-cCchhHH-H---HHHhHHhhhc-C-ceEEEEcCCcchHHHHHHHHHh-HhcCCcEEEEeCCCCCcccCCCccccc
Q 009060 67 NLVG-CCNELNA-G---YAADGYARSR-G-VGACVVTFTVGGLSVLNAIAGA-YSENLPVICIVGGPNSNDYGTNRILHH 138 (545)
Q Consensus 67 ~~i~-~~hE~~A-~---~~A~gyar~t-g-~gv~~~t~GpG~~n~~~~l~~A-~~~~~Pllvi~g~~~~~~~~~~~~~~~ 138 (545)
|++. ...|++| + .+|.|||..- + ..+++..+-=+..-+..-+..+ -+.+.++++ ++.......+.+...|+
T Consensus 563 R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ys~F~~qRa~Dqi~~~~d~~~~~v~l-~~~~~~~~~g~dG~tHq 641 (886)
T 2qtc_A 563 QILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLI-GGTSGRTTLNGEGLQHE 641 (886)
T ss_dssp CBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSHHHHHHHHHHHHHTTCCCEEE-EESCSTTTSTTTCTTTC
T ss_pred ceeeeccCchhhhhHHHHHHHHHHhcCCCceEEEEEehHHHHHHHHHHHHHHHHHhcCCEEE-EEecCcccCCCCCCccC
Confidence 4454 7899997 4 5899999986 3 4554443333333333333333 234445554 33322222222223343
Q ss_pred ccCCCChHHHHHHhhhce-eEEEEeCChhhHHHHHHHHHHHhhhCCCc----EEEEeCCCCCCCCCCCCCCCCCCcccCC
Q 009060 139 TIGLPDFTQELRCFQAIT-CSQAVVNNLGDAHELIDTAISTALKESKP----VYISISCNLPGIPHPTFARDPVPFFLAP 213 (545)
Q Consensus 139 ~~~~~~~~d~~~~~~~~~-k~~~~v~~~~~~~~~l~~A~~~a~~~~GP----V~l~iP~dv~~~~~~~~~~~~~~~~~~~ 213 (545)
.. ..+.+++.+- .....+.++.++..+++.|++.. .|| |++-+|..-+....+. . +
T Consensus 642 ~~------~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~---~gP~~e~v~i~~~r~~~~~~~p~---------~-~ 702 (886)
T 2qtc_A 642 DG------HSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERM---YGEKQENVYYYITTLNENYHMPA---------M-P 702 (886)
T ss_dssp CS------CHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHH---HSTTCCCCEEEEECCSCCBCCCC---------C-C
T ss_pred Cc------chHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhc---CCCCCceEEEEEeCCccccCCCC---------C-C
Confidence 11 1345777763 33456667777777777777643 367 9999986421100010 0 0
Q ss_pred CCCCchhhHHHHHHHHHHHHhc---CCCEEEcCccccccchHHHHHHHHHHhCCce
Q 009060 214 KVSNQLGLEAAVEATADFLNKA---VKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (545)
Q Consensus 214 ~~~~~~~~~~~i~~~~~~l~~a---~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv 266 (545)
. . ....+-.-+..+++. +.-+.|++.|.--..+.++...|++.+|+.+
T Consensus 703 ~----~-~~~~~~gga~vlr~g~~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~a 753 (886)
T 2qtc_A 703 E----G-AEEGIRKGIYKLETIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGS 753 (886)
T ss_dssp T----T-CHHHHHHTCEEEEEECCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEEE
T ss_pred c----c-hhhhccCceEEEEecCCCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCce
Confidence 0 0 111111111233333 1346777777765567777778887767643
No 124
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=48.27 E-value=2.5 Score=48.29 Aligned_cols=117 Identities=12% Similarity=0.002 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHHhc------CCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCC
Q 009060 220 GLEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSS 293 (545)
Q Consensus 220 ~~~~~i~~~~~~l~~a------~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~ 293 (545)
+-+++++.+++.|++. ++..++.|.+.........+.+|+..+|.+.+.....-+....-.+...|. +....
T Consensus 162 SWdeAl~~IA~~l~~i~~~~Gp~~i~~~~~~~~~~~~~~~~~~rf~~~lG~~n~~~~~~~~~~~~a~~~~~G~--~~~~~ 239 (976)
T 2ivf_A 162 SWDEAAGDIADSIIDSFEAQGSDGFILDAPHVHAGSIAWGAGFRMTYLMDGVSPDINVDIGDTYMGAFHTFGK--MHMGY 239 (976)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGEEECCCCSTTCHHHHHHHHHHHHHHTCBEECHHHHHTCCCHHHHHHHSC--CCCBC
T ss_pred cHHHHHHHHHHHHHHHHHHhCCceEEEEecCCccchHHHHHHHHHHHHhCCcccCccccccchhhhhhheecC--CCCCC
Confidence 3567788888777653 344444454433222235678999999988765221111111111222232 11111
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCCcccccccC----CCCCcEEEEcCCccee
Q 009060 294 SFCGEIVESADAYVFVGPIFNDYSSVGYSLL----IKKEKAIIVQPHRVTV 340 (545)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~----~~~~~~i~id~d~~~~ 340 (545)
. ..-+.++|+||++|+...+.....+..+ .++.|+|.||+...+.
T Consensus 240 -~-~~D~~nad~Il~~G~N~~~~~p~~~~~~~~ar~~GakvivVDPr~t~t 288 (976)
T 2ivf_A 240 -S-ADNLLDAELIFMTCSNWSYTYPSSYHFLSEARYKGAEVVVIAPDFNPT 288 (976)
T ss_dssp -C-GGGGGGCSEEEEESCCHHHHCTTTHHHHHHHHHHTCEEEEECSSCCTT
T ss_pred -C-hhhHhhCcEEEEeCCChhHcccHHHHHHHHHHHcCCEEEEECCCCCcc
Confidence 1 1226799999999988533222111111 1357999999876543
No 125
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=43.67 E-value=1.2e+02 Score=26.21 Aligned_cols=98 Identities=17% Similarity=0.077 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHHHHHh--h-----hcCCCCeEEecCchhHH---HHHHhH--------Hhh-hcC
Q 009060 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDH--L-----IAEPELNLVGCCNELNA---GYAADG--------YAR-SRG 89 (545)
Q Consensus 29 ~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~a--l-----~~~~~i~~i~~~hE~~A---~~~A~g--------yar-~tg 89 (545)
.++.|++.|.+.+-=++||+-++......-+ | ....+++.+....+.+- ..-..+ +.. .+.
T Consensus 31 ~~~~i~~~l~~~~~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (188)
T 1tk9_A 31 VGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQVEALGNE 110 (188)
T ss_dssp HHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHHhhhhccCCCCCceEeccCCchhHhhhhcCCCHHHHHHHHHHHhCCC
Confidence 4555666777777667777755554333222 1 11235655554322221 111111 121 222
Q ss_pred ceEEEEcCCcc-hHHHHHHHHHhHhcCCcEEEEeCCCC
Q 009060 90 VGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPN 126 (545)
Q Consensus 90 ~gv~~~t~GpG-~~n~~~~l~~A~~~~~Pllvi~g~~~ 126 (545)
--++++.|-.| ..+.+..+..|...+.|+|.||+...
T Consensus 111 ~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~ 148 (188)
T 1tk9_A 111 KDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGG 148 (188)
T ss_dssp TCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGG
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 23333344444 55778888889999999999998643
No 126
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=42.61 E-value=1e+02 Score=27.27 Aligned_cols=101 Identities=18% Similarity=0.184 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHH--hhhc-----CCCCeEEecCchhHH---HHHHhHH----h-----hhc
Q 009060 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLD--HLIA-----EPELNLVGCCNELNA---GYAADGY----A-----RSR 88 (545)
Q Consensus 28 ~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~--al~~-----~~~i~~i~~~hE~~A---~~~A~gy----a-----r~t 88 (545)
..++.|++.|++.|-=++||+-++....... .|.. ..+++.+....+.+. ..-..|| + ..+
T Consensus 34 ~a~~~i~~al~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~r~g~~~~~~~~d~~~~~a~~~d~~~~~~~~~~l~~~~~ 113 (201)
T 3trj_A 34 QAAKAMVSCLENGGKVLVCGNGSSGVIAQHFTSKLLNHFEMERPPLPAIALTGDVATITAVGNHYGFSQIFAKQVAALGN 113 (201)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHC-------CCCEEETTSCHHHHHHHHHHTCGGGTTHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhcCccCCCCCCCceEEccCChHHHHHhccCCCHHHHHHHHHHhhCC
Confidence 4567777888888999999987665543322 2331 246776665423221 1111222 1 122
Q ss_pred CceEEEEcCCcc-hHHHHHHHHHhHhcCCcEEEEeCCCCCc
Q 009060 89 GVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSN 128 (545)
Q Consensus 89 g~gv~~~t~GpG-~~n~~~~l~~A~~~~~Pllvi~g~~~~~ 128 (545)
.--++++.|..| ..+.+..+..|...+.|+|.||+...+.
T Consensus 114 ~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~ 154 (201)
T 3trj_A 114 EDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGA 154 (201)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCG
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCH
Confidence 223333334444 5578888888999999999999976554
No 127
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=42.11 E-value=9.7 Score=30.70 Aligned_cols=33 Identities=18% Similarity=0.087 Sum_probs=27.6
Q ss_pred CCCEEEcCccccccchHHHHHHHHHHhCCceEe
Q 009060 236 VKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (545)
Q Consensus 236 ~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~t 268 (545)
.|.+++++.|...+--...+++.|++.|+++-.
T Consensus 7 mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i 39 (108)
T 3nbm_A 7 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIA 39 (108)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCceEE
Confidence 457889999987766778999999999999855
No 128
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=40.14 E-value=76 Score=26.60 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHhcCCC--EEEcCcccccc-----------chHHHHHHHHHHhCCceEeCC---CCccCCCC------
Q 009060 221 LEAAVEATADFLNKAVKP--VLVGGPNIRVA-----------KAQKAFIELADATGYPIAIMP---SGKGLVPE------ 278 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~rp--vi~~G~g~~~~-----------~a~~~l~~lae~~~~Pv~tt~---~~kg~~~~------ 278 (545)
....++-+..+++..... |++.+.|+... .-.+.+.+|++..|+++..-. ..||+.++
T Consensus 29 a~~Al~~A~aala~g~eV~~VFf~~DGV~~a~~~q~p~~~~~~l~~~~~~La~~~gv~l~vC~~~a~~RGi~~~~~a~~~ 108 (140)
T 2d1p_A 29 ASSAFQFAQALIADGHELSSVFFYREGVYNANQLTSPASDEFDLVRAWQQLNAQHGVALNICVAAALRRGVVDETEAGRL 108 (140)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECGGGGGGGBTTCCCCTTSCCHHHHHHHHHHHHCCEEEEEHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCccCEEEEechHHHHHhcCCCCccccCChHHHHHHHHHHcCCEEEEeHHHHHHcCCCchhhhhhc
Confidence 344566666666654443 67888888542 245678889999999987754 35788655
Q ss_pred ---CCCCccceecCCCCCHHHHHHhhcCCEEEEe
Q 009060 279 ---HHPHFIGTYWGAVSSSFCGEIVESADAYVFV 309 (545)
Q Consensus 279 ---~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~l 309 (545)
.+.+..|. -..+.....+.+.++|.||.+
T Consensus 109 ~~~~~~L~~g~--~i~gl~~L~~~~~~aDrVitF 140 (140)
T 2d1p_A 109 GLASSNLQQGF--TLSGLGALAEASLTCDRVVQF 140 (140)
T ss_dssp TCSCCCBCTTE--EEECTHHHHHHHHHSSEEEEC
T ss_pred ccccccccCCe--EEcCHHHHHHHHHhCCEEEeC
Confidence 12455554 133556788889999999864
No 129
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=38.52 E-value=69 Score=27.45 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCC----EEEecCCCChHHHHH-hhhcC
Q 009060 31 RHLARRLVEIGAK----DVFSVPGDFNLTLLD-HLIAE 63 (545)
Q Consensus 31 ~~i~~~L~~~GV~----~vFg~pG~~~~~l~~-al~~~ 63 (545)
+--.+.|+++|++ .+|-+||...+|+.- .|.++
T Consensus 32 ~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~ 69 (154)
T 1hqk_A 32 EGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARK 69 (154)
T ss_dssp HHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhc
Confidence 4445888999997 799999999999874 44443
No 130
>4au1_A Precorrin-8X methylmutase; isomerase, HBA; HET: P8X; 1.45A {Rhodobacter capsulatus}
Probab=37.67 E-value=35 Score=31.31 Aligned_cols=54 Identities=20% Similarity=0.219 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHhcC--CCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCcc
Q 009060 221 LEAAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKG 274 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~--rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg 274 (545)
.+..+-++++++.+.+ ||.+|+|-=+---++.+.=.+|++..++|.++..--||
T Consensus 157 APTAL~~Lleli~~~~~~rPalVIG~PVGFVgAaESK~~L~~~~~vP~I~~~GrkG 212 (229)
T 4au1_A 157 APTALFHLLNMLEDPACPRPAAIIGCPVGFIGAAESKAALAVANPVPWVIVEGRLG 212 (229)
T ss_dssp CHHHHHHHHHHTTSTTSCCCSEEEECCCCSSSHHHHHHHHHHHCCSSEEEECSSCC
T ss_pred cHHHHHHHHHHHHhcCCCCCCEEEEcCCCccChHHHHHHHHhCCCCCEEEEecCCC
Confidence 3567888899997654 89999886554444555555677778899999776665
No 131
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=37.17 E-value=1.7e+02 Score=25.40 Aligned_cols=100 Identities=11% Similarity=0.043 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHHHHHh--hh-----cCCCCeEEecCchhHHH---H--------HHhHHhhhcC-
Q 009060 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDH--LI-----AEPELNLVGCCNELNAG---Y--------AADGYARSRG- 89 (545)
Q Consensus 29 ~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~a--l~-----~~~~i~~i~~~hE~~A~---~--------~A~gyar~tg- 89 (545)
.++.|++.+.+.+-=++||+-++......-+ +. ...+++.+....+.+-. . +...+...-+
T Consensus 37 ~~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (198)
T 2xbl_A 37 VADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNE 116 (198)
T ss_dssp HHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHSCSSSCCCCCCEEETTCCHHHHHHHHHHHCGGGTTHHHHHHHCCT
T ss_pred HHHHHHHHHHcCCEEEEEeCcHhhHHHHHHHHHHHhhhccCCCCCceEEecCChHHHHHhhccCCHHHHHHHHHHhhCCC
Confidence 3455555556666556677655444332221 11 12356655553222211 1 0112222222
Q ss_pred ceEEEEcCCcc-hHHHHHHHHHhHhcCCcEEEEeCCCCCc
Q 009060 90 VGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSN 128 (545)
Q Consensus 90 ~gv~~~t~GpG-~~n~~~~l~~A~~~~~Pllvi~g~~~~~ 128 (545)
--++++.|..| ..+.+..+..|...+.|+|.||+.....
T Consensus 117 ~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~ 156 (198)
T 2xbl_A 117 GDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGE 156 (198)
T ss_dssp TCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCCT
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 23334444444 4577888888999999999999875443
No 132
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=36.99 E-value=39 Score=26.93 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=25.6
Q ss_pred CCEEEcCccccccchHHHHHHHHHHhCCce
Q 009060 237 KPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (545)
Q Consensus 237 rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv 266 (545)
|.++++|.|...+=..+.+++.++..|+++
T Consensus 6 kIlvvC~~G~~TSll~~kl~~~~~~~gi~~ 35 (109)
T 2l2q_A 6 NILLVCGAGMSTSMLVQRIEKYAKSKNINA 35 (109)
T ss_dssp EEEEESSSSCSSCHHHHHHHHHHHHHTCSE
T ss_pred EEEEECCChHhHHHHHHHHHHHHHHCCCCe
Confidence 368899999988867789999999999985
No 133
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=36.79 E-value=44 Score=29.61 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeC
Q 009060 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (545)
+.+.+++++++|.++++-++++|.|.... ....+.....++|.|+...
T Consensus 30 ~~~~i~~~~~~i~~a~~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~~ 77 (201)
T 3fxa_A 30 SEEALVKTVEKIAECTGKIVVAGCGTSGV-AAKKLVHSFNCIERPAVFL 77 (201)
T ss_dssp CHHHHHHHHHHHHHCSSCEEEECCTHHHH-HHHHHHHHHHHTTCCEEEC
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEecHHHH-HHHHHHHHHHhcCCcEEEe
Confidence 35679999999999976788888887542 3444544456689888753
No 134
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=36.72 E-value=67 Score=27.51 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCC----EEEecCCCChHHHHH-hhhc
Q 009060 31 RHLARRLVEIGAK----DVFSVPGDFNLTLLD-HLIA 62 (545)
Q Consensus 31 ~~i~~~L~~~GV~----~vFg~pG~~~~~l~~-al~~ 62 (545)
+--.+.|+++|++ .++-+||...+|+.- .+.+
T Consensus 32 ~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~ 68 (154)
T 1rvv_A 32 SGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAE 68 (154)
T ss_dssp HHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHh
Confidence 4445889999997 799999999999874 4443
No 135
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=35.99 E-value=22 Score=37.61 Aligned_cols=107 Identities=16% Similarity=0.089 Sum_probs=58.0
Q ss_pred HHHHHhHHhhhc------CceEEEEcCCcchHH-HHHHHHHhHhcCCcEEEEeCCCCCccc-----CCCcccccccCCCC
Q 009060 77 AGYAADGYARSR------GVGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDY-----GTNRILHHTIGLPD 144 (545)
Q Consensus 77 A~~~A~gyar~t------g~gv~~~t~GpG~~n-~~~~l~~A~~~~~Pllvi~g~~~~~~~-----~~~~~~~~~~~~~~ 144 (545)
+.-+|.|.+.+. ++.+|++ |=|..+ .+..+..|...+.|+++|.-+...... +...... .+..
T Consensus 418 ~l~~A~Gaala~~~~~~~~~vv~~~--GDG~~~~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~-~~~~-- 492 (563)
T 2vk8_A 418 TTGATLGAAFAAEEIDPKKRVILFI--GDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKAQYN-EIQG-- 492 (563)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEE--EHHHHHHHGGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG-CCCC--
T ss_pred HHHHHHHHHHhCcccCCCCCEEEEE--cchHhhccHHHHHHHHHcCCCcEEEEEECCcchhhhhhhCCCCCcc-cCCC--
Confidence 334555555432 2444443 544432 357788888999998888865442211 1100000 0111
Q ss_pred hHHHHHHhhhcee---EEEEeCChhhHHHHHHHHHH-HhhhC-CCcEEEEeCCC
Q 009060 145 FTQELRCFQAITC---SQAVVNNLGDAHELIDTAIS-TALKE-SKPVYISISCN 193 (545)
Q Consensus 145 ~~d~~~~~~~~~k---~~~~v~~~~~~~~~l~~A~~-~a~~~-~GPV~l~iP~d 193 (545)
.|...+++.+-- +..++++++++ +.|++ .+... .||+.|++..+
T Consensus 493 -~d~~~~a~a~G~~~~~~~~v~~~~el----~~al~~~a~~~~~~p~liev~~~ 541 (563)
T 2vk8_A 493 -WDHLSLLPTFGAKDYETHRVATTGEW----DKLTQDKSFNDNSKIRMIEVMLP 541 (563)
T ss_dssp -CCGGGHHHHTTCSSEEEEEECBHHHH----HHHHTCTTTTSCSSEEEEEEECC
T ss_pred -CCHHHHHHHhCCCCCcEEEecCHHHH----HHHHHHHHHhCCCCcEEEEEEeC
Confidence 133456666532 26788876655 55555 45554 47999999877
No 136
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=35.52 E-value=1.4e+02 Score=28.39 Aligned_cols=73 Identities=12% Similarity=0.148 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCC--CEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh
Q 009060 223 AAVEATADFLNKAVK--PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (545)
Q Consensus 223 ~~i~~~~~~l~~a~r--pvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l 300 (545)
+.+.++++.|...++ -++++|..- .+.+.++++|++.|.+.++..---|.|.... ...+
T Consensus 60 e~L~~Aa~~I~~i~~~~~ILfVgTk~---~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~----------------t~~f 120 (305)
T 3iz6_A 60 EKLQLAARVIVAIENPQDIIVQSARP---YGQRAVLKFAQYTGAHAIAGRHTPGTFTNQL----------------QTSF 120 (305)
T ss_dssp HHHHHHHHHHHHTTSSCCEEEECCSH---HHHHHHHHHHHHHTCEEECSCCCTTTTTTTT----------------TSCS
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCcH---HHHHHHHHHHHHhCCccccCcccCCcccCcc----------------cccc
Confidence 356677777776544 377777543 4778999999999998876422223222110 0124
Q ss_pred hcCCEEEEeCCCCC
Q 009060 301 ESADAYVFVGPIFN 314 (545)
Q Consensus 301 ~~aD~vl~lG~~~~ 314 (545)
..+|+|+++..+-+
T Consensus 121 ~ePdllvV~Dp~~d 134 (305)
T 3iz6_A 121 SEPRLLILTDPRTD 134 (305)
T ss_dssp SCCSEEEESCTTTT
T ss_pred cCCceeEEeCcccc
Confidence 78999999987654
No 137
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=35.40 E-value=1.2e+02 Score=26.27 Aligned_cols=87 Identities=16% Similarity=-0.022 Sum_probs=52.3
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEecCchhHHHHHHhHHhhhc-C-ceEEEEcCCcch
Q 009060 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSR-G-VGACVVTFTVGG 101 (545)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~---~~i~~i~~~hE~~A~~~A~gyar~t-g-~gv~~~t~GpG~ 101 (545)
...++.|++.+...|+=|+||. |..-.-..+++.+. ++..-+.- ....+ + +.+++.++|--
T Consensus 25 ~~AA~llaqai~~~g~IyvfG~-Ghs~~~~~e~~~~~e~l~~~~~~~~------------~~~i~~~D~vii~S~Sg~n- 90 (170)
T 3jx9_A 25 FDVVRLLAQALVGQGKVYLDAY-GEFEGLYPMLSDGPDQMKRVTKIKD------------HKTLHAVDRVLIFTPDTER- 90 (170)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEC-GGGGGGTHHHHTSTTCCTTEEECCT------------TCCCCTTCEEEEEESCSCC-
T ss_pred HHHHHHHHHHHhCCCEEEEECC-CcHHHHHHHHHcccCCccchhhhhh------------cCCCCCCCEEEEEeCCCCC-
Confidence 3468999999999999999996 43333222344332 23333321 11333 3 55555555532
Q ss_pred HHHHHHHHHhHhcCCcEEEEeCCCCC
Q 009060 102 LSVLNAIAGAYSENLPVICIVGGPNS 127 (545)
Q Consensus 102 ~n~~~~l~~A~~~~~Pllvi~g~~~~ 127 (545)
...+--...|...++|+|.||....+
T Consensus 91 ~~~ie~A~~ake~G~~vIaITs~~~~ 116 (170)
T 3jx9_A 91 SDLLASLARYDAWHTPYSIITLGDVT 116 (170)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESSCCC
T ss_pred HHHHHHHHHHHHCCCcEEEEeCcchh
Confidence 12455666688899999999984433
No 138
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=33.53 E-value=50 Score=26.38 Aligned_cols=92 Identities=12% Similarity=0.104 Sum_probs=55.2
Q ss_pred cCcccccc-chHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCC-CCCCccc
Q 009060 242 GGPNIRVA-KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPI-FNDYSSV 319 (545)
Q Consensus 242 ~G~g~~~~-~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~-~~~~~~~ 319 (545)
++.|..++ =+.+.|++.|+++|+.+-...+|-. |.- .. -..+-+.++|+||+.... ..+.
T Consensus 11 CptGiAhTymAAeaLekaA~~~G~~ikVEtqgs~----------g~~-n~----Lt~~~I~~AD~VIia~d~~v~~~--- 72 (106)
T 2m1z_A 11 CATGVAHTYMAAQALKKGAKKMGNLIKVETQGAT----------GIE-NE----LTEKDVNIGEVVIFAVDTKVRNK--- 72 (106)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEETT----------EES-SC----CCHHHHHHCSEEEEEESSCCSTH---
T ss_pred CCCcHHHHHHHHHHHHHHHHHCCCEEEEEEecCc----------ccc-CC----CCHHHHhhCCEEEEeccccccch---
Confidence 56676553 4679999999999999976655421 110 01 112456899999998743 2111
Q ss_pred ccccCCCCCcEEEEcCCcceecCCCccccccHHHHHHHHHHHhc
Q 009060 320 GYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLR 363 (545)
Q Consensus 320 ~~~~~~~~~~~i~id~d~~~~~~~~~~~~~d~~~~l~~L~~~l~ 363 (545)
..| .+.++++++.... +. |++.+|+...+.+.
T Consensus 73 --~RF-~gk~v~~~~v~~~-i~--------~~~~~l~~a~~~~~ 104 (106)
T 2m1z_A 73 --ERF-DGKVVLEVPVSAP-IK--------DAEKVINAALALID 104 (106)
T ss_dssp --HHH-TTSEEEEECTTHH-HH--------CHHHHHHHHHHHHT
T ss_pred --hcc-CCCcEEEEcHHHH-HH--------CHHHHHHHHHHHHh
Confidence 122 3557887766542 21 46677776655543
No 139
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=33.32 E-value=33 Score=27.40 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=24.8
Q ss_pred CCCEEEcCccccccchHH-HHHHHHHHhCCc
Q 009060 236 VKPVLVGGPNIRVAKAQK-AFIELADATGYP 265 (545)
Q Consensus 236 ~rpvi~~G~g~~~~~a~~-~l~~lae~~~~P 265 (545)
+|.++++|.|...+.-.. .+++.+++.|++
T Consensus 19 ~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~ 49 (110)
T 3czc_A 19 VKVLTACGNGMGSSMVIKMKVENALRQLGVS 49 (110)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 567899999987766554 889999999988
No 140
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=33.18 E-value=23 Score=35.66 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=32.9
Q ss_pred hhHHHHHHhhhhcCCCeEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchh
Q 009060 443 WSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYT 497 (545)
Q Consensus 443 ~~l~aAiGaala~p~r~vv~i~GDGsf~~~~~eL~ta~~~~lpi~ivV~NN~~~g 497 (545)
.++.+|+|++++ ..|+++...|.|-..+ ...|.++...++|+++++.+..+.+
T Consensus 75 ~a~~~a~Gaa~a-G~r~~~~ts~~G~~~~-~d~l~~aa~~~~P~Vi~~~~~~~~~ 127 (395)
T 1yd7_A 75 ASIAAAIGASWA-GAKAMTATSGPGFSLM-QENIGYAVMTETPVVIVDVQRSGPS 127 (395)
T ss_dssp HHHHHHHHHHHT-TCCEEEEEETTHHHHH-TTTCC----CCCCEEEEEEC-----
T ss_pred HHHHHHHHHHHh-CCcEEEEeCchHHHHH-HHHHHHHHhcCCCEEEEEeeCCCCC
Confidence 467888888887 4677777778876554 4446667788999999988877665
No 141
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=33.01 E-value=18 Score=29.29 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=26.6
Q ss_pred CCCEEEcCccccccc-hHHHHHHHHHHhCCce
Q 009060 236 VKPVLVGGPNIRVAK-AQKAFIELADATGYPI 266 (545)
Q Consensus 236 ~rpvi~~G~g~~~~~-a~~~l~~lae~~~~Pv 266 (545)
+|.++++|.|...+. ....+++.++..|+.+
T Consensus 22 kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~ 53 (113)
T 1tvm_A 22 RKIIVACGGAVATSTMAAEEIKELCQSHNIPV 53 (113)
T ss_dssp EEEEEESCSCSSHHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEECCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 467999999998876 5789999999999985
No 142
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=32.49 E-value=1.2e+02 Score=26.58 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHH--HHHhhh-----cCCCCeEEecCchhHHHHHH----hHH---------hhhc
Q 009060 29 LGRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLI-----AEPELNLVGCCNELNAGYAA----DGY---------ARSR 88 (545)
Q Consensus 29 ~a~~i~~~L~~~GV~~vFg~pG~~~~~--l~~al~-----~~~~i~~i~~~hE~~A~~~A----~gy---------ar~t 88 (545)
..+.+++.+.+.+-=++||+-++.... +...+. ...+++.+..... +..+.| .+| ...+
T Consensus 34 ~~~~i~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~ 112 (199)
T 1x92_A 34 ASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTD-SSTITSIANDYSYNEVFSKQIRALGQ 112 (199)
T ss_dssp HHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCC-HHHHHHHHHHTCGGGTTHHHHHHHCC
T ss_pred HHHHHHHHHHCCCEEEEEcCchhHHHHHHHHHHHhcCcccCCCCCceEecCCC-hhHHHHhhcCccHHHHHHHHHHhCCC
Confidence 445666778887765677775444332 222231 2246666654321 111111 122 1222
Q ss_pred CceEEEEcCCcc-hHHHHHHHHHhHhcCCcEEEEeCCCCC
Q 009060 89 GVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNS 127 (545)
Q Consensus 89 g~gv~~~t~GpG-~~n~~~~l~~A~~~~~Pllvi~g~~~~ 127 (545)
.--++++.|..| ..+.+..+..|...+.++|.||+....
T Consensus 113 ~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s 152 (199)
T 1x92_A 113 PGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGG 152 (199)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 223444444444 567888888899999999999986443
No 143
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=32.44 E-value=40 Score=28.04 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=22.7
Q ss_pred CCCEEEcCccccccchHHHHHHHHHHhCCceEeCCC
Q 009060 236 VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS 271 (545)
Q Consensus 236 ~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~ 271 (545)
+-|.||+-+|.. -.+++.++|++.|+||+.|..
T Consensus 74 ~~~~iIlt~g~~---~~~~i~~~A~~~~ipvl~t~~ 106 (139)
T 2ioj_A 74 NVRCLILTGNLE---PVQLVLTKAEERGVPVILTGH 106 (139)
T ss_dssp TEEEEEEETTCC---CCHHHHHHHHHHTCCEEECSS
T ss_pred CCcEEEEcCCCC---CCHHHHHHHHHCCCeEEEECC
Confidence 344444433432 447788999999999998864
No 144
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=30.46 E-value=1.3e+02 Score=27.90 Aligned_cols=73 Identities=16% Similarity=0.128 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCCC--EEEcCccccccchHHHHHHHHHHhCCceE-eCCCCccCCCCCCCCccceecCCCCCHHHHHH
Q 009060 223 AAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIA-IMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (545)
Q Consensus 223 ~~i~~~~~~l~~a~rp--vi~~G~g~~~~~a~~~l~~lae~~~~Pv~-tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~ 299 (545)
..+.+|++.+...++| ++++|.. ..+.+.+.++|++.|.+.+ +.---.|.+..- . ...
T Consensus 51 ~~L~~A~~~i~~i~~~~~iLfVgtk---~~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~---------------~-t~~ 111 (241)
T 2xzm_B 51 QKIKLAARVIAAVQHPEDVMVVCSR---IYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNY---------------Q-TLK 111 (241)
T ss_dssp HHHHHHHHHHHHCSSGGGEEEECCS---HHHHHHHHHHHHHHTCBCCCCSSCCTTTTTCT---------------T-CTT
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECC---HHHHHHHHHHHHHhCCEEeccccccCCcccCc---------------c-ccc
Confidence 4577788888876544 7777753 2467889999999999876 432111222110 0 012
Q ss_pred hhcCCEEEEeCCCCC
Q 009060 300 VESADAYVFVGPIFN 314 (545)
Q Consensus 300 l~~aD~vl~lG~~~~ 314 (545)
+..+|+|+++..+-+
T Consensus 112 ~~~PdlliV~Dp~~e 126 (241)
T 2xzm_B 112 YEEPRVLIVTDPRSD 126 (241)
T ss_dssp CCCCSEEEESCTTTT
T ss_pred cCCCCEEEEECCCcc
Confidence 467999999986643
No 145
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=30.39 E-value=1.3e+02 Score=25.75 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCC---EEEecCCCChHHHHH-hhhcCCCCeEEe----------cCchhHHHHHHhHHhhhc
Q 009060 31 RHLARRLVEIGAK---DVFSVPGDFNLTLLD-HLIAEPELNLVG----------CCNELNAGYAADGYARSR 88 (545)
Q Consensus 31 ~~i~~~L~~~GV~---~vFg~pG~~~~~l~~-al~~~~~i~~i~----------~~hE~~A~~~A~gyar~t 88 (545)
+--.+.|+++|++ .+|-+||...+|+.- .+.++.+..-|. .++|-.|...+.|..+++
T Consensus 33 ~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~gl~~v~ 104 (156)
T 1c2y_A 33 EGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAVVNSASSGVLSAG 104 (156)
T ss_dssp HHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHHTTCCSEEEEEEECCCCSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccccCCchHHHHHHHHHHHHHHHHH
Confidence 3445888999985 899999999999874 344332222221 225666666666655543
No 146
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=30.12 E-value=1.1e+02 Score=32.96 Aligned_cols=85 Identities=14% Similarity=0.124 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh
Q 009060 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l 300 (545)
-...++++.+.|.+.++.+|+.-..+..-.+...+.++.+++|..+..- +|+..+-..|.... ...++.
T Consensus 58 m~~Av~~i~~aI~~~ekI~I~GH~D~DGi~Saa~L~~~L~~lG~~v~~~------ip~r~~egygl~~~-----~I~~~~ 126 (666)
T 2zxr_A 58 LREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPF------IPHRLEEGYGVLME-----RVPEHL 126 (666)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEC------CC-----------------------
T ss_pred HHHHHHHHHHHHHcCCeEEEEeccCCchHHHHHHHHHHHHHcCCcEEEe------cCCCCCccccCCHH-----HHHhhc
Confidence 4566788888888877755554443333345667888899999876543 33332222222111 122333
Q ss_pred hcCCEEEEeCCCCCCC
Q 009060 301 ESADAYVFVGPIFNDY 316 (545)
Q Consensus 301 ~~aD~vl~lG~~~~~~ 316 (545)
.+.|+||.+.+.....
T Consensus 127 ~~~~LIItVD~G~~s~ 142 (666)
T 2zxr_A 127 EASDLFLTVDCGITNH 142 (666)
T ss_dssp --CCEEEESCCC----
T ss_pred cCCCEEEEEcCCchhh
Confidence 5789999999875443
No 147
>2keg_A PLNK; protein, peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2keh_A
Probab=29.98 E-value=23 Score=20.50 Aligned_cols=14 Identities=29% Similarity=0.743 Sum_probs=11.4
Q ss_pred cccchhHHHHHHhh
Q 009060 439 GSIGWSVGATLGYA 452 (545)
Q Consensus 439 g~mG~~l~aAiGaa 452 (545)
.++|+++++|.|+-
T Consensus 6 ngigyaigyafgav 19 (32)
T 2keg_A 6 NGIGYAIGYAFGAV 19 (32)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred cCcceeehhhhhHH
Confidence 56899999999863
No 148
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=29.69 E-value=1.8e+02 Score=26.95 Aligned_cols=73 Identities=19% Similarity=0.136 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCCC--EEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh
Q 009060 223 AAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (545)
Q Consensus 223 ~~i~~~~~~l~~a~rp--vi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l 300 (545)
..+.+|+..+..+++| ++++|..- .+.+.+.++|++.|.+.++.--=-|.+.. +. ...+
T Consensus 89 ~~L~~A~~~i~~~~~~~~iLfVgTk~---~aq~~V~~~A~~~g~~yv~~RWlgG~LTN----~~------------~~~f 149 (253)
T 3bch_A 89 EKLLLAARAIVAIENPADVSVISSRN---TGQRAVLKFAAATGATPIAGRFTPGTFTN----QI------------QAAF 149 (253)
T ss_dssp HHHHHHHHHHHTCSSGGGEEEEECSH---HHHHHHHHHHHHHCCEEEESCCCTTTTTC----CS------------CSTT
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCH---HHHHHHHHHHHHhCCeeecceecCCcccC----cc------------cccc
Confidence 3467777777755443 77777543 36788999999999998875322232211 10 0124
Q ss_pred hcCCEEEEeCCCCC
Q 009060 301 ESADAYVFVGPIFN 314 (545)
Q Consensus 301 ~~aD~vl~lG~~~~ 314 (545)
..+|+|+++..+-+
T Consensus 150 ~~PdlliV~Dp~~e 163 (253)
T 3bch_A 150 REPRLLVVTDPRAD 163 (253)
T ss_dssp CSCSEEEESCTTTT
T ss_pred CCCCEEEEECCCcc
Confidence 67999999986644
No 149
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=28.84 E-value=1.6e+02 Score=33.09 Aligned_cols=127 Identities=12% Similarity=0.109 Sum_probs=72.4
Q ss_pred HHhhhcCC-CCeEEe-cCchhHHHHHHhHHhhhcCc--eEEEEcCCcchHH----HHHHHH---HhH-hcCCcEEEEeCC
Q 009060 57 LDHLIAEP-ELNLVG-CCNELNAGYAADGYARSRGV--GACVVTFTVGGLS----VLNAIA---GAY-SENLPVICIVGG 124 (545)
Q Consensus 57 ~~al~~~~-~i~~i~-~~hE~~A~~~A~gyar~tg~--gv~~~t~GpG~~n----~~~~l~---~A~-~~~~Pllvi~g~ 124 (545)
++.+.+.- ..+++. ...|+++..+|.|||...-. .++..+.|. ++| ++.=+. +|+ ..+.||+++...
T Consensus 642 l~~l~~~~gp~rv~ds~IaE~~~vg~a~G~A~~G~~~lpv~e~qf~d-F~~~AQra~DQii~~~~ak~~~~~~vv~~l~~ 720 (933)
T 2jgd_A 642 LQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGD-FANGAQVVIDQFISSGEQKWGRMCGLVMLLPH 720 (933)
T ss_dssp GGCSCTTCCCEEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-CGG-GGGGGHHHHHHTTTTHHHHHCCCCCCEEEEEC
T ss_pred hHHHHHHcCCCeEEECCcCHHHHHHHHHHHHhcCCCCCCEEEEEEhh-hhcccHHHHHHHHHHHHHHHccCCCEEEEEeC
Confidence 44454432 357774 57999999999999997433 343334542 222 222222 233 368898888764
Q ss_pred CCCcccCCCcccccccCCCChHHHHHHh--hhceeEEEEeCChhhHHHHHHHHHHHhhhC-CCcEEEEeCCCCCC
Q 009060 125 PNSNDYGTNRILHHTIGLPDFTQELRCF--QAITCSQAVVNNLGDAHELIDTAISTALKE-SKPVYISISCNLPG 196 (545)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~GPV~l~iP~dv~~ 196 (545)
.. .+.++ -|++.. ..+...+. -.+ ....++++.++..++++++. .. ++||+|--|..+..
T Consensus 721 -G~--~g~G~-~Hss~~---~E~~l~~~~~pnm--~V~~Pst~~e~~~lLr~a~~---~~~~~Pvii~~pk~l~r 783 (933)
T 2jgd_A 721 -GY--EGQGP-EHSSAR---LERYLQLCAEQNM--QVCVPSTPAQVYHMLRRQAL---RGMRRPLVVMSPKSLLR 783 (933)
T ss_dssp -CC--SSSCT-TSSCCC---HHHHHHTCCTTCC--EEECCCSHHHHHHHHHHHHH---SSCCCCEEEEECSGGGG
T ss_pred -CC--CCCCc-ccccch---HHHHHHHhCCCCe--EEEecCCHHHHHHHHHHHHH---hcCCCcEEEEecchhcc
Confidence 22 23332 244321 12333332 222 23567788888888887743 33 79999999988754
No 150
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=28.59 E-value=1.4e+02 Score=26.86 Aligned_cols=73 Identities=12% Similarity=0.157 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcC-CCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhh
Q 009060 223 AAVEATADFLNKAV-KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVE 301 (545)
Q Consensus 223 ~~i~~~~~~l~~a~-rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~ 301 (545)
..+.+|++.+.+.+ .-++++|.. ..+.+.+.++|++.|.+.++..---|.+. +.. .+.+.
T Consensus 54 ~~L~~A~~~i~~i~~~~iLfVgTk---~~~~~~V~~~A~~~g~~~v~~rwlgG~LT---------------N~~-~~~f~ 114 (208)
T 1vi6_A 54 ERIRVAAKFLSRYEPSKILLVAAR---QYAHKPVQMFSKVVGSDYIVGRFIPGTLT---------------NPM-LSEYR 114 (208)
T ss_dssp HHHHHHHHHHTTSCGGGEEEEECS---GGGHHHHHHHHHHHCCEEEESSCCTTTTT---------------CTT-STTCC
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCC---HHHHHHHHHHHHHhCCeeecCEECCCccc---------------Chh-hHhhC
Confidence 45677788887762 236777753 34788999999999999987532223221 111 01246
Q ss_pred cCCEEEEeCCCCC
Q 009060 302 SADAYVFVGPIFN 314 (545)
Q Consensus 302 ~aD~vl~lG~~~~ 314 (545)
++|+|+++..+-+
T Consensus 115 ~PdlliV~Dp~~e 127 (208)
T 1vi6_A 115 EPEVVFVNDPAID 127 (208)
T ss_dssp CCSEEEESCTTTT
T ss_pred CCCEEEEECCCcc
Confidence 7999999986643
No 151
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=28.50 E-value=2.1e+02 Score=24.78 Aligned_cols=100 Identities=12% Similarity=0.079 Sum_probs=57.2
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHH--HHhhhc-----CCCCeEEecCchhHHHHH---HhHH---------hhhc
Q 009060 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTL--LDHLIA-----EPELNLVGCCNELNAGYA---ADGY---------ARSR 88 (545)
Q Consensus 28 ~~a~~i~~~L~~~GV~~vFg~pG~~~~~l--~~al~~-----~~~i~~i~~~hE~~A~~~---A~gy---------ar~t 88 (545)
...+.+++.+.+.+-=++||+-++..... ...+.. ..+++.+....+.+...+ -.+| ...+
T Consensus 29 ~~~~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~~~~ 108 (196)
T 2yva_A 29 RAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGH 108 (196)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCchhhHHHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCCCHHHHHHHHHHhcCC
Confidence 34577888888888778888865543322 222331 346666655432211110 0111 1222
Q ss_pred CceEEEEcCCcc-hHHHHHHHHHhHhcCCcEEEEeCCCCC
Q 009060 89 GVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNS 127 (545)
Q Consensus 89 g~gv~~~t~GpG-~~n~~~~l~~A~~~~~Pllvi~g~~~~ 127 (545)
.--++++.|..| ..+.+..+..|...+.++|.||+...+
T Consensus 109 ~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s 148 (196)
T 2yva_A 109 AGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGG 148 (196)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 223444444444 567888888899999999999987544
No 152
>3e7d_A COBH, precorrin-8X methylmutase; ssgcid, decode, braba00006A, structural genomics, seattle ST genomics center for infectious disease; 1.80A {Brucella abortus} SCOP: c.23.17.1
Probab=28.38 E-value=69 Score=28.95 Aligned_cols=54 Identities=26% Similarity=0.359 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHhcC-CCEEEcCccccccchHHHHHHHHH-HhCCceEeCCCCcc
Q 009060 221 LEAAVEATADFLNKAV-KPVLVGGPNIRVAKAQKAFIELAD-ATGYPIAIMPSGKG 274 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a~-rpvi~~G~g~~~~~a~~~l~~lae-~~~~Pv~tt~~~kg 274 (545)
.+..+-++++++.+.+ ||-+++|-=+---++.+.=.+|.+ ..++|.++..--||
T Consensus 140 APTAL~~Lleli~~g~~~PalVIG~PVGFV~aaESKe~L~~~~~~vP~I~~~GrkG 195 (212)
T 3e7d_A 140 APTALFRLFELLDAGAPKPALIIGMPVGFVGAAESKDELAANSRGVPYVIVRGRRG 195 (212)
T ss_dssp CHHHHHHHHHHHHTTCCCCSEEEECCCSSSSHHHHHHHHHHCCTTCCEEEECSSCC
T ss_pred cHHHHHHHHHHHHcCCCCcceEEEeCCCccChHHHHHHHHhcCCCCCEEEEecCCC
Confidence 4667888999998776 899998865544344444344555 27999999876665
No 153
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=27.49 E-value=58 Score=25.97 Aligned_cols=68 Identities=19% Similarity=0.169 Sum_probs=43.2
Q ss_pred cchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCC
Q 009060 249 AKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKE 328 (545)
Q Consensus 249 ~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~ 328 (545)
.=+.+.|.+-|+++|+.+-...+|-. |.- ..+ ..+-+.++|+||+.+...-+.. .| .+.
T Consensus 19 ymAaeaL~~aA~~~G~~ikVEtqGs~----------G~~-n~L----t~~~I~~Ad~VIiA~d~~v~~~-----RF-~GK 77 (106)
T 2r48_A 19 YMAAENLQKAADRLGVSIKVETQGGI----------GVE-NKL----TEEEIREADAIIIAADRSVNKD-----RF-IGK 77 (106)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEETT----------EEE-SCC----CHHHHHHCSEEEEEESSCCCCG-----GG-TTS
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCC----------Ccc-CCC----CHHHHHhCCEEEEEeCCccCHh-----Hc-CCC
Confidence 34779999999999999887666532 221 111 1245789999999986543221 12 455
Q ss_pred cEEEEcCCc
Q 009060 329 KAIIVQPHR 337 (545)
Q Consensus 329 ~~i~id~d~ 337 (545)
++++++...
T Consensus 78 ~v~~~~v~~ 86 (106)
T 2r48_A 78 KLLSVGVQD 86 (106)
T ss_dssp BEEEECHHH
T ss_pred eEEEeCHHH
Confidence 777765543
No 154
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=27.30 E-value=88 Score=26.89 Aligned_cols=32 Identities=22% Similarity=0.504 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCC----EEEecCCCChHHHHH-hhhc
Q 009060 31 RHLARRLVEIGAK----DVFSVPGDFNLTLLD-HLIA 62 (545)
Q Consensus 31 ~~i~~~L~~~GV~----~vFg~pG~~~~~l~~-al~~ 62 (545)
+--.+.|+++|++ .+|-+||...+|+.- .|.+
T Consensus 30 ~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~ 66 (158)
T 1di0_A 30 KSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLAR 66 (158)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHh
Confidence 3445788999986 699999999999874 4443
No 155
>1hi9_A Dciaa, dipeptide transport protein DPPA; hydrolase (protease), protease, D-aminopeptidase, decamer, SELF-compartmentalizing; 2.4A {Bacillus subtilis} SCOP: c.99.1.1
Probab=27.22 E-value=56 Score=30.93 Aligned_cols=141 Identities=18% Similarity=0.213 Sum_probs=75.1
Q ss_pred HHHHHHHHHHcCCCEEEecCCCChHH--HHHhhhcCCCCeEEecCc----------hhHHHHHHhHHhhhcC-ceEEEEc
Q 009060 30 GRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLIAEPELNLVGCCN----------ELNAGYAADGYARSRG-VGACVVT 96 (545)
Q Consensus 30 a~~i~~~L~~~GV~~vFg~pG~~~~~--l~~al~~~~~i~~i~~~h----------E~~A~~~A~gyar~tg-~gv~~~t 96 (545)
..+.++.+.+.|.+.|.-.-+...+. +.+.|. +..++|...+ |.--+.+=.||--..| .|++-=|
T Consensus 39 vnAai~ga~~~Ga~eV~V~DsHg~~~NLl~e~L~--~ra~li~G~prp~~Mm~Gld~sfD~v~fiGYHa~AG~~gvLaHT 116 (274)
T 1hi9_A 39 ANYCIAEAFNSGCTEVLVNDSHSKMNNLMVEKLH--PEADLISGDVKPFSMVEGLDDTFRGALFLGYHARASTPGVMSHS 116 (274)
T ss_dssp HHHHHHHHHHTTCSEEEEEECSTTSCCSCTTTSC--TTSEEEEESCCTTGGGTTCCTTCSEEEEEEECCCTTSSSTTCCS
T ss_pred HHHHHHHHHHCCCeEEEEEccCCCcCCcChhHCC--cCeEEEeCCCCCcchhccccCCccEEEEeecCCCCCCCCccCCC
Confidence 45568999999999999876654332 333342 3566766543 2211222235544445 4544333
Q ss_pred CCcchHH-----------HHHHHHHhHhcCCcEEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeCCh
Q 009060 97 FTVGGLS-----------VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNL 165 (545)
Q Consensus 97 ~GpG~~n-----------~~~~l~~A~~~~~Pllvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~ 165 (545)
++-...+ .+++.. |-.-++||+++|||......-+. .. ++ ...+..=+.+.+++....+|
T Consensus 117 ~~~~~~~v~iNG~~~gE~~lna~~-Ag~~gVPV~lvsGDd~~~~e~~~-----~~--P~-~~tv~vK~~~gr~aa~~~~p 187 (274)
T 1hi9_A 117 MIFGVRHFYINDRPVGELGLNAYV-AGYYDVPVLMVAGDDRAAKEAEE-----LI--PN-VTTAAVKQTISRSAVKCLSP 187 (274)
T ss_dssp SSTTEEEEEETTEEECHHHHHHHH-HHHTTCCEEEEEEEHHHHHHHHT-----TS--TT-CEEEEEEEEEETTEEEECCH
T ss_pred CccceEEEEECCEEcCHHHHHHHH-HhhcCCCEEEEecCHHHHHHHHH-----hC--CC-CeEEEEeecccccccccCCH
Confidence 2211111 233333 44579999999998543311000 00 00 00011112234466777789
Q ss_pred hhHHHHHHHHHHHhhh
Q 009060 166 GDAHELIDTAISTALK 181 (545)
Q Consensus 166 ~~~~~~l~~A~~~a~~ 181 (545)
+.+.+.|+++.+.|..
T Consensus 188 ~~a~~~I~~aa~~Al~ 203 (274)
T 1hi9_A 188 AKRGRLLTEKTAFALQ 203 (274)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9888888888888774
No 156
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Probab=27.19 E-value=46 Score=38.77 Aligned_cols=115 Identities=10% Similarity=-0.056 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHhc------CCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCH
Q 009060 221 LEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSS 294 (545)
Q Consensus 221 ~~~~i~~~~~~l~~a------~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~ 294 (545)
-+++++.+++.|.+. ++...+.+.............+|+..+|.+.+.....-...|..++...|.. .....
T Consensus 163 WDEAld~IA~~l~~i~~~~Gp~sI~~~~~~~~~~~~~y~~~~rf~~~lG~~~~~~~~~~c~~~~~~~~~~G~~-~~~~~- 240 (1247)
T 1q16_A 163 WQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPQTWGEQ-TDVPE- 240 (1247)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGEEEECCCGGGSHHHHHHHHHHHHHHTCEEECCTTTTTCSCTHHHHHHSCS-CCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEEEeCCccchHHHHHHHHHHHHHhCCCccCCCCchhhhhhhHHHHhCCC-CCCCC-
Confidence 466777777766542 2233333332211111122358889999887654322121222122222210 00011
Q ss_pred HHHHHhhcCCEEEEeCCCCCCCccccccc----CCCCCcEEEEcCCcce
Q 009060 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVT 339 (545)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~~~ 339 (545)
..-+.++|+||++|+...+.....+.. ..++.|+|.||+...+
T Consensus 241 --~~D~~~ad~iv~wGsN~~~t~~~~~~~l~~ar~~G~KvVvIDPr~t~ 287 (1247)
T 1q16_A 241 --SADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAE 287 (1247)
T ss_dssp --GGGGGGCSEEEEESCCHHHHSGGGHHHHHHHGGGTCEEEEECSSCCH
T ss_pred --HHHHhhCCEEEEECCCchhccHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 112568999999998853322211111 1246799999987754
No 157
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=25.83 E-value=2.9e+02 Score=26.91 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEe
Q 009060 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVG 70 (545)
Q Consensus 31 ~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~ 70 (545)
+..++.|.+.|++-||+.......++.+...+.|+++++.
T Consensus 76 ~~~l~~l~~~g~d~Ii~~g~~~~~~~~~vA~~~Pdv~fv~ 115 (356)
T 3s99_A 76 ERSIKRIARAGNKLIFTTSFGYMDPTVKVAKKFPDVKFEH 115 (356)
T ss_dssp HHHHHHHHHTTCSEEEECSGGGHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCEEEE
Confidence 4566777778888888775454445554444445555554
No 158
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=25.60 E-value=42 Score=31.38 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCCCEEEcCccccc
Q 009060 223 AAVEATADFLNKAVKPVLVGGPNIRV 248 (545)
Q Consensus 223 ~~i~~~~~~l~~a~rpvi~~G~g~~~ 248 (545)
+.+++++++|+++++.+|+.|.|...
T Consensus 3 ~~i~~l~~~l~~a~~ivv~tGAGiS~ 28 (253)
T 1ma3_A 3 DEIRKAAEILAKSKHAVVFTGAGISA 28 (253)
T ss_dssp HHHHHHHHHHHHCSSEEEEECGGGSC
T ss_pred HHHHHHHHHHHhCCcEEEEEchhhhH
Confidence 45788999999999999999999864
No 159
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=25.24 E-value=59 Score=25.93 Aligned_cols=68 Identities=19% Similarity=0.207 Sum_probs=43.2
Q ss_pred cchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCCCCC
Q 009060 249 AKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKE 328 (545)
Q Consensus 249 ~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~ 328 (545)
.=+.+.|.+-|+++|+.+-...+|-. |.- ..+ ..+-+.++|+||+.+...-+.. .| .+.
T Consensus 19 ymAaeaL~~aA~~~G~~ikVEtqGs~----------G~~-n~L----t~~~I~~Ad~VIiA~d~~v~~~-----RF-~GK 77 (106)
T 2r4q_A 19 FMAADALKEKAKELGVEIKVETNGSS----------GIK-HKL----TAQEIEDAPAIIVAADKQVEME-----RF-KGK 77 (106)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEETT----------EEE-SCC----CHHHHHHCSCEEEEESSCCCCG-----GG-TTS
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCC----------Ccc-CCC----CHHHHHhCCEEEEEeCCccCHh-----Hc-CCC
Confidence 34789999999999999887666532 221 111 1245789999999986543221 12 455
Q ss_pred cEEEEcCCc
Q 009060 329 KAIIVQPHR 337 (545)
Q Consensus 329 ~~i~id~d~ 337 (545)
++++++...
T Consensus 78 ~v~~~~v~~ 86 (106)
T 2r4q_A 78 RVLQVPVTA 86 (106)
T ss_dssp BEEEECHHH
T ss_pred eEEEeCHHH
Confidence 777765543
No 160
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=24.78 E-value=80 Score=31.37 Aligned_cols=65 Identities=23% Similarity=0.240 Sum_probs=39.6
Q ss_pred cCCCEEEcCcccccc--chHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh--hcCCEEEEeC
Q 009060 235 AVKPVLVGGPNIRVA--KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV--ESADAYVFVG 310 (545)
Q Consensus 235 a~rpvi~~G~g~~~~--~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l--~~aD~vl~lG 310 (545)
.+|++|+.+.+.... +..+.+.+..+..|+.+..-... +.+|-.--+ ....+.+ .++|+||.||
T Consensus 33 ~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~-----~~~p~~~~v-------~~~~~~~~~~~~d~IIavG 100 (387)
T 3bfj_A 33 GKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGV-----EPNPKDTNV-------RDGLAVFRREQCDIIVTVG 100 (387)
T ss_dssp CSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCC-----CSSCBHHHH-------HHHHHHHHHTTCCEEEEEE
T ss_pred CCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCc-----cCCCCHHHH-------HHHHHHHHhcCCCEEEEeC
Confidence 488999999888766 57888888888888876421111 223322111 1222222 4789999998
Q ss_pred C
Q 009060 311 P 311 (545)
Q Consensus 311 ~ 311 (545)
.
T Consensus 101 G 101 (387)
T 3bfj_A 101 G 101 (387)
T ss_dssp S
T ss_pred C
Confidence 5
No 161
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=24.67 E-value=74 Score=25.11 Aligned_cols=36 Identities=17% Similarity=0.357 Sum_probs=30.3
Q ss_pred CCCCCCCCCCCCcccCCCCccHHHHHHHHHHHcCCC
Q 009060 8 GSTGQPGSAPAPVRGGASVGTLGRHLARRLVEIGAK 43 (545)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~~L~~~GV~ 43 (545)
||.+++++++.+..........++.|-+.|+..+|.
T Consensus 1 ~~~~~~~~~p~~~~~~ldTk~I~~~ike~L~~~~is 36 (101)
T 1x2l_A 1 GSSGSSGAGPGAEEEQLDTAEIAFQVKEQLLKHNIG 36 (101)
T ss_dssp CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCCcccCCCCCCcCccCHHHHHHHHHHHHHHcCCC
Confidence 677888888777777788889999999999999985
No 162
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=24.43 E-value=69 Score=26.14 Aligned_cols=40 Identities=20% Similarity=0.110 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEe
Q 009060 30 GRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVG 70 (545)
Q Consensus 30 a~~i~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~ 70 (545)
...+++.+.+.|++.|.-.+|.....+.+..++ .+|+++.
T Consensus 71 v~~~v~e~~~~g~k~v~~~~G~~~~e~~~~a~~-~Girvv~ 110 (122)
T 3ff4_A 71 QLSEYNYILSLKPKRVIFNPGTENEELEEILSE-NGIEPVI 110 (122)
T ss_dssp HGGGHHHHHHHCCSEEEECTTCCCHHHHHHHHH-TTCEEEE
T ss_pred HHHHHHHHHhcCCCEEEECCCCChHHHHHHHHH-cCCeEEC
Confidence 344567788889999999999988888887765 4898873
No 163
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=24.37 E-value=70 Score=25.73 Aligned_cols=89 Identities=13% Similarity=0.167 Sum_probs=53.4
Q ss_pred Cccccc-cchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHhhcCCEEEEeCCCCC-CCcccc
Q 009060 243 GPNIRV-AKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFN-DYSSVG 320 (545)
Q Consensus 243 G~g~~~-~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~-~~~~~~ 320 (545)
..|..+ .=+.+.|++-|+++|+.+-...+|-. |.- ..+ ..+-+.++|+||+.+..-- +..
T Consensus 15 ptGiAHTyMAAeaL~~aA~~~G~~ikVEtqGs~----------G~~-n~L----t~~~I~~Ad~VIiA~d~~v~~~~--- 76 (111)
T 2kyr_A 15 PMGLAHTFMAAQALEEAAVEAGYEVKIETQGAD----------GIQ-NRL----TAQDIAEATIIIHSVAVTPEDNE--- 76 (111)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTSSEEEEEEEETT----------EEE-SCC----CHHHHHHCSEEEEEESSCCTTGG---
T ss_pred CCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCC----------CcC-CCC----CHHHHHhCCEEEEEeCCCcCchh---
Confidence 344433 34789999999999999987665532 220 111 1245689999999986532 121
Q ss_pred cccCCCCCcEEEEcCCcceecCCCccccccHHHHHHHHHHH
Q 009060 321 YSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKK 361 (545)
Q Consensus 321 ~~~~~~~~~~i~id~d~~~~~~~~~~~~~d~~~~l~~L~~~ 361 (545)
.| .+.++++++.... +. |++.+|+.....
T Consensus 77 --RF-~GK~v~~~~v~~a-i~--------~p~~~l~~a~~~ 105 (111)
T 2kyr_A 77 --RF-ESRDVYEITLQDA-IK--------NAAGIIKEIEEM 105 (111)
T ss_dssp --GG-TTSCEEEEETTHH-HH--------SHHHHHHHHHHH
T ss_pred --hc-CCCeEEEeCHHHH-HH--------CHHHHHHHHHHH
Confidence 22 4557887766543 11 456666665443
No 164
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=24.18 E-value=62 Score=32.17 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=40.1
Q ss_pred cCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh--hcCCEEEEeCC
Q 009060 235 AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV--ESADAYVFVGP 311 (545)
Q Consensus 235 a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l--~~aD~vl~lG~ 311 (545)
.+|++|+.+......+..+.+.+..++.|+.+..-... +.+|-.--+ ....+.+ .++|+||.||.
T Consensus 31 ~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~-----~~~p~~~~v-------~~~~~~~~~~~~d~IIavGG 97 (386)
T 1rrm_A 31 YQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGV-----VPNPTITVV-------KEGLGVFQNSGADYLIAIGG 97 (386)
T ss_dssp CCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBC-----CSSCBHHHH-------HHHHHHHHHHTCSEEEEEES
T ss_pred CCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCc-----cCCCCHHHH-------HHHHHHHHhcCcCEEEEeCC
Confidence 58899999887766567788888888888876421111 223322111 1222222 47899999985
No 165
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=24.09 E-value=74 Score=35.51 Aligned_cols=97 Identities=14% Similarity=0.012 Sum_probs=57.1
Q ss_pred eEEEEcCCcchH----HHHHHHHHhHhcCCc---EEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeC
Q 009060 91 GACVVTFTVGGL----SVLNAIAGAYSENLP---VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN 163 (545)
Q Consensus 91 gv~~~t~GpG~~----n~~~~l~~A~~~~~P---llvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~ 163 (545)
.++++..|=|+. +..-++.-|...+.| +|+|.-+..... .... ++.....+. .+.++.+---..++.
T Consensus 278 ~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~-st~~--~~~~s~~~~---~~~a~a~G~p~~~Vd 351 (868)
T 2yic_A 278 VVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGF-TTAP--TDSRSSEYC---TDVAKMIGAPIFHVN 351 (868)
T ss_dssp EEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBT-TBCH--HHHCSSSST---TGGGGGGTCCEEEEE
T ss_pred ceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCccc-ccCc--cccccccCH---HHHHHhCCCcEEEEe
Confidence 467777788773 444555567778888 988886532211 1100 000000111 123444433334554
Q ss_pred --ChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 164 --NLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 164 --~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
+++++...++.|++.++...|||.|++-..
T Consensus 352 G~D~~av~~a~~~A~~~ar~~~~PvlIe~~ty 383 (868)
T 2yic_A 352 GDDPEACAWVARLAVDFRQAFKKDVVIDMLCY 383 (868)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEEEee
Confidence 688888888888888887889999997644
No 166
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=23.91 E-value=8.3 Score=42.30 Aligned_cols=116 Identities=11% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhc-----CCCEEEcCccccccchHHHHHHHHHH-hCCceEeCCCCccCCCCCCCCccceecCCCCCHH
Q 009060 222 EAAVEATADFLNKA-----VKPVLVGGPNIRVAKAQKAFIELADA-TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSF 295 (545)
Q Consensus 222 ~~~i~~~~~~l~~a-----~rpvi~~G~g~~~~~a~~~l~~lae~-~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~ 295 (545)
+++++.+++.|++. ..-+.+.|++....+..-.+.+|++. +|.+-+.....-..-+...-+.... |......
T Consensus 82 deAl~~ia~~l~~~~~~~G~~~i~~~~~~~~~~e~~~~~~~~~~~~~gs~n~~~~~~~c~~~~~~~~~~~~--G~~~~~~ 159 (723)
T 2nap_A 82 DEALDLMASRFRSSIDMYGPNSVAWYGSGQCLTEESYVANKIFKGGFGTNNVDGNPRLCMASAVGGYVTSF--GKDEPMG 159 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEECTTSCHHHHHHHHHHHHHTSCCCCEEEGGGGTTHHHHHHHHHHH--SSCSCSS
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEEeCCcccchhhHHHHHHHHHhcCCCceeCCCccccchHhHHHHhcc--CCCCCCC
Q ss_pred HHHHhhcCCEEEEeCCCCCCCcccccccCC----C--CCcEEEEcCCcce
Q 009060 296 CGEIVESADAYVFVGPIFNDYSSVGYSLLI----K--KEKAIIVQPHRVT 339 (545)
Q Consensus 296 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~----~--~~~~i~id~d~~~ 339 (545)
...-+.++|+||++|+.+.+.....+..+. + +.|+|.||+....
T Consensus 160 ~~~d~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~t~ 209 (723)
T 2nap_A 160 TYADIDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTN 209 (723)
T ss_dssp CGGGGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCG
T ss_pred ChhhHhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCcCCc
No 167
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=23.90 E-value=2.8e+02 Score=26.35 Aligned_cols=73 Identities=19% Similarity=0.147 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCCC--EEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh
Q 009060 223 AAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (545)
Q Consensus 223 ~~i~~~~~~l~~a~rp--vi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l 300 (545)
..+.++++.|...++| ++++|.. ..+.+.++++|++.|.+.+..--=-|.+.. +.- ..+
T Consensus 56 ~~L~~A~~~i~~i~~~~~ILfVgTk---~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN----~~t------------~~f 116 (295)
T 2zkq_b 56 EKLLLAARAIVAIENPADVSVISSR---NTGQRAVLKFAAATGATPIAGRFTPGTFTN----QIQ------------AAF 116 (295)
T ss_dssp HHHHHHHHHHHHSSCGGGEEEEECS---HHHHHHHHHHHHHHCCEEEESSCCCC-CCC----TTC------------SSC
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCc---HHHHHHHHHHHHHhCCceecceEecccccC----ccc------------ccc
Confidence 4567777777765443 7777753 236788999999999998864322222211 100 124
Q ss_pred hcCCEEEEeCCCCC
Q 009060 301 ESADAYVFVGPIFN 314 (545)
Q Consensus 301 ~~aD~vl~lG~~~~ 314 (545)
..+|+|+++..+-+
T Consensus 117 ~~PdlliV~Dp~~e 130 (295)
T 2zkq_b 117 REPRLLVVTDPRAD 130 (295)
T ss_dssp CCCSEEEESCTTTT
T ss_pred cCCCeEEEeCCCcc
Confidence 67999999986654
No 168
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=23.76 E-value=2.5e+02 Score=26.07 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcCCC--EEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh
Q 009060 223 AAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (545)
Q Consensus 223 ~~i~~~~~~l~~a~rp--vi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l 300 (545)
..+..|+..+...++| ++++|..- .+...+.++|++.|.+.++..--.|.|... . ...+
T Consensus 55 ~~L~~A~~~i~~i~~~~~vlfVgTk~---~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~---------------~-t~~f 115 (252)
T 3u5c_A 55 EKLVLAARIIAAIPNPEDVVAISSRT---FGQRAVLKFAAHTGATPIAGRFTPGSFTNY---------------I-TRSF 115 (252)
T ss_dssp HHHHHHHHHHTTSSSGGGEEEEECSH---HHHHHHHHHHHHSSCEEEESCCCTTSSSCT---------------T-STTC
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCc---HHHHHHHHHHHHhCCceecCcccCCcccCh---------------h-hhhc
Confidence 3566777777765444 77777542 477899999999999888643222322111 0 0235
Q ss_pred hcCCEEEEeCCCCC
Q 009060 301 ESADAYVFVGPIFN 314 (545)
Q Consensus 301 ~~aD~vl~lG~~~~ 314 (545)
..+|+|+++..+-+
T Consensus 116 ~~PdllvV~Dp~~d 129 (252)
T 3u5c_A 116 KEPRLVIVTDPRSD 129 (252)
T ss_dssp CCCSEEEESCTTTT
T ss_pred cCCceEEEeCCccc
Confidence 78999999987654
No 169
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=23.35 E-value=17 Score=39.86 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh------cCCCEEEcCccccccchHHHHHHHHHHhCCceEeC--CCCccCCCCCCCCccceecCCCCC
Q 009060 222 EAAVEATADFLNK------AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM--PSGKGLVPEHHPHFIGTYWGAVSS 293 (545)
Q Consensus 222 ~~~i~~~~~~l~~------a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt--~~~kg~~~~~hpl~~G~~~G~~~~ 293 (545)
+++++.+++.|++ .+...++.|.+... +..-.+.+|++.+|.+-+.+ ....+.........+|. +....
T Consensus 81 deAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~-~~~~~~~~~~~~~G~~n~~~~~~~c~~~~~~~~~~~~G~--~~~~d 157 (727)
T 2e7z_A 81 DQALDEIAEKLKKIIAKYGPESLGVSQTEINQQ-SEYGTLRRFMNLLGSPNWTSAMYMCIGNTAGVHRVTHGS--YSFAS 157 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEECGGGTC-CCTTHHHHHHHHHTCCCEECGGGGTTHHHHHHHHHHHSS--CEEEC
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEEeCCCCCc-cchHHHHHHHHHcCCCCccCCcccchhHHHHHHHHhcCC--CCCCC
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCCcc-cccccCC----CCCcEEEEcC
Q 009060 294 SFCGEIVESADAYVFVGPIFNDYSS-VGYSLLI----KKEKAIIVQP 335 (545)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~-~~~~~~~----~~~~~i~id~ 335 (545)
+.++|+||++|+...+... ..+..+. ++.|+|.||+
T Consensus 158 ------~~~ad~il~~G~n~~~~~p~~~~~~l~~a~~~G~klividP 198 (727)
T 2e7z_A 158 ------FADSNCLLFIGKNLSNHNWVSQFNDLKAALKRGCKLIVLDP 198 (727)
T ss_dssp ------TTTCSEEEEESCCCBTTBSHHHHHHHHHHHHHTCEEEEECS
T ss_pred ------cccCCEEEEECCChhhcCCHHHHHHHHHHHHCCCeEEEECC
No 170
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=23.35 E-value=80 Score=29.03 Aligned_cols=63 Identities=11% Similarity=0.074 Sum_probs=40.2
Q ss_pred CCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhcc------------cHHHHHHHHHhCCCeEEEEEeCCc
Q 009060 429 NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQV------------TAQEISTMIRCGQRSIIFLINNGG 495 (545)
Q Consensus 429 ~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~~------------~~~eL~ta~~~~lpi~ivV~NN~~ 495 (545)
+.+|+++.+.|.||+++.-++- ..+-.|+.+.|..+..- +..|+..+++...+=.=+++||.+
T Consensus 19 pVR~ItN~SSG~mG~aiA~~~~----~~Ga~V~lv~~~~~~~~~~~~~~~~~~v~s~~em~~~v~~~~~~~Dili~aAA 93 (232)
T 2gk4_A 19 SVRSITNHSTGHLGKIITETLL----SAGYEVCLITTKRALKPEPHPNLSIREITNTKDLLIEMQERVQDYQVLIHSMA 93 (232)
T ss_dssp SSEEEEECCCCHHHHHHHHHHH----HTTCEEEEEECTTSCCCCCCTTEEEEECCSHHHHHHHHHHHGGGCSEEEECSB
T ss_pred ceeeccCCCCCHHHHHHHHHHH----HCCCEEEEEeCCccccccCCCCeEEEEHhHHHHHHHHHHHhcCCCCEEEEcCc
Confidence 5679999999999988876653 34567888888766432 356665555443322224555655
No 171
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=23.05 E-value=1.5e+02 Score=28.16 Aligned_cols=56 Identities=18% Similarity=0.170 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCcc
Q 009060 227 ATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFI 284 (545)
Q Consensus 227 ~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~ 284 (545)
++++.|.+..+..+++|... +.....+..++++.++|++........+....+++.
T Consensus 65 ~~a~~li~~~~v~~i~g~~~--s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~~~~~~f 120 (353)
T 4gnr_A 65 SVTTNLVTQSKVSAVVGPAT--SGATAAAVANATKAGVPLISPSATQDGLTKGQDYLF 120 (353)
T ss_dssp HHHHHHHHTSCCSEEECCCS--HHHHHHHHHHHHHTTCCEEESSCCCTTTTTTCTTEE
T ss_pred HHHHHHHhhCCceEEecccc--CcccceehhhhhccCcceEeecccccccccCCcccc
Confidence 33444444556666666543 346678889999999999987665555554455443
No 172
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=22.79 E-value=90 Score=28.54 Aligned_cols=121 Identities=15% Similarity=0.129 Sum_probs=62.6
Q ss_pred CCCCEEEecCCccccccccccccCCCeeEeccCccccchhHHHHHHhhhhcCCCeEEEEEcchhhc----------ccHH
Q 009060 405 SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----------VTAQ 474 (545)
Q Consensus 405 ~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGaala~p~r~vv~i~GDGsf~----------~~~~ 474 (545)
....++++..++.- .. .+.+|+++.+.|.||+++.-++. ..+-.|+.+.|+.+.. -+..
T Consensus 7 ~gk~vlVTgG~T~E-~i------DpVR~itN~SSg~iG~aiA~~~~----~~Ga~V~l~~~~~~l~~~~g~~~~dv~~~~ 75 (226)
T 1u7z_A 7 KHLNIMITAGPTRE-PL------DPVRYISDHSSGKMGFAIAAAAA----RRGANVTLVSGPVSLPTPPFVKRVDVMTAL 75 (226)
T ss_dssp TTCEEEEEESBCEE-ES------SSSEEEEECCCSHHHHHHHHHHH----HTTCEEEEEECSCCCCCCTTEEEEECCSHH
T ss_pred CCCEEEEECCCCCc-cc------CceeeccCCCccHHHHHHHHHHH----HCCCEEEEEECCcccccCCCCeEEccCcHH
Confidence 34456666544321 11 25679999999989888776654 3355687777754321 1355
Q ss_pred HHHHHHHhCCCeEEEEEeCCchhh----h---hhhcC---C--CCC-CC-CCCCHHHHHHHcCCCCCceeEEEEee
Q 009060 475 EISTMIRCGQRSIIFLINNGGYTI----E---VEIHD---G--PYN-VI-KNWDYTGLVNAIHNGEGKCWTAKVSI 536 (545)
Q Consensus 475 eL~ta~~~~lpi~ivV~NN~~~g~----~---~~~~~---~--~~~-~l-~~~d~~~lA~a~G~~~~~~~~~~v~~ 536 (545)
++..++....+-.=+++||.+-.- + ..+.. . ..+ .| +++|+-+--...-.+..-+-+|.-+|
T Consensus 76 ~~~~~v~~~~~~~Dili~~Aav~d~~p~~~~~~KIkk~~~~~~~l~l~L~~~pdIL~~l~~~~~~~~~~VGFaaEt 151 (226)
T 1u7z_A 76 EMEAAVNASVQQQNIFIGCAAVADYRAATVAPEKIKKQATQGDELTIKMVKNPDIVAGVAALKDHRPYVVGFAAET 151 (226)
T ss_dssp HHHHHHHHHGGGCSEEEECCBCCSEEESSCCSSCC-------CEEEEEEEECCCHHHHHHHCSSSCCEEEEEEEES
T ss_pred HHHHHHHHhcCCCCEEEECCcccCCCCccCChHHhccccccCCceEEEEeecHHHHHHHHhhhcCCcEEEEcchhh
Confidence 655554333322234566766432 0 01111 1 010 12 67887766554322223356666665
No 173
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=22.52 E-value=96 Score=26.61 Aligned_cols=28 Identities=32% Similarity=0.733 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCC----EEEecCCCChHHHHH
Q 009060 31 RHLARRLVEIGAK----DVFSVPGDFNLTLLD 58 (545)
Q Consensus 31 ~~i~~~L~~~GV~----~vFg~pG~~~~~l~~ 58 (545)
+--.+.|+++|++ .+|-+||...+|+.-
T Consensus 31 ~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa 62 (157)
T 2obx_A 31 SAFEAEMADIGGDRFAVDVFDVPGAYEIPLHA 62 (157)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEESSGGGHHHHH
T ss_pred HHHHHHHHHcCCCccceEEEECCcHHHHHHHH
Confidence 4445888999986 599999999999874
No 174
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=21.80 E-value=1.2e+02 Score=30.83 Aligned_cols=141 Identities=17% Similarity=0.173 Sum_probs=72.4
Q ss_pred CCccHHHHHHHHHHHcCCCEEEecCCCC----------hHHHHHhhhcCCCCeEEe-------cCch-hHHHHHHhHHhh
Q 009060 25 SVGTLGRHLARRLVEIGAKDVFSVPGDF----------NLTLLDHLIAEPELNLVG-------CCNE-LNAGYAADGYAR 86 (545)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vFg~pG~~----------~~~l~~al~~~~~i~~i~-------~~hE-~~A~~~A~gyar 86 (545)
.+......+++.+.+.|++.+.-++.+. ...+.+..++ .+++++. ..++ ..++|+. .+.+
T Consensus 72 vp~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~-~g~~viGPnc~Gv~~~~~~~~~~~~~-~~~~ 149 (457)
T 2csu_A 72 VPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHK-YGMRIIGPNCVGIMNTHVDLNATFIT-VAKK 149 (457)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHH-HTCEEECSSCCEEEEGGGTEEEESSC-CCEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHH-cCCEEEcCCcceEEccCCCceeeecC-CCCC
Confidence 3344556667777888999988877442 3445555543 3666662 2233 3344443 2233
Q ss_pred hcCceEEEEcCCcchHHHHHHHHHhHhcCCc--EEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhh------ceeE
Q 009060 87 SRGVGACVVTFTVGGLSVLNAIAGAYSENLP--VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQA------ITCS 158 (545)
Q Consensus 87 ~tg~gv~~~t~GpG~~n~~~~l~~A~~~~~P--llvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~------~~k~ 158 (545)
|...++..||.....++.-+ ...++. -++=+|.... -++.|.++.|.. +.-|
T Consensus 150 --G~v~~vsqSG~~~~~~~~~~---~~~g~G~s~~vs~G~~~~---------------~~~~d~l~~~~~D~~t~~I~l~ 209 (457)
T 2csu_A 150 --GNVAFISQSGALGAGIVYKT---IKEDIGFSKFISVGNMAD---------------VDFAELMEYLADTEEDKAIALY 209 (457)
T ss_dssp --CSEEEEESCHHHHHHHHHHH---HHTTCEESEEEECTTCCS---------------SCHHHHHHHHTTCSSCCEEEEE
T ss_pred --CCEEEEeCCHHHHHHHHHHH---HhcCCCeeEEEECCCcCC---------------CCHHHHHHHHhcCCCCCEEEEE
Confidence 75556667775554443333 333343 3333333221 124455555533 4444
Q ss_pred EEEeCChhhHHHHHHHHHHHhhhCCCcEEEEeCC
Q 009060 159 QAVVNNLGDAHELIDTAISTALKESKPVYISISC 192 (545)
Q Consensus 159 ~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~ 192 (545)
.+.+.++....+..++ + ....||.+-..-
T Consensus 210 ~E~i~~~~~f~~~a~~----~-~~~KPVv~~k~G 238 (457)
T 2csu_A 210 IEGVRNGKKFMEVAKR----V-TKKKPIIALKAG 238 (457)
T ss_dssp ESCCSCHHHHHHHHHH----H-HHHSCEEEEECC
T ss_pred EecCCCHHHHHHHHHH----h-cCCCCEEEEEcC
Confidence 4445555554444443 3 235788887653
No 175
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=21.52 E-value=67 Score=24.33 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=22.8
Q ss_pred CCCEEEcCccccccchHHHHHHHHHHhCCceEeCC
Q 009060 236 VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (545)
Q Consensus 236 ~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (545)
.-|++++=+ .. .-...++++|++.|+||+...
T Consensus 16 ~aP~VvAKG-~~--~~A~~I~~~A~e~~VPi~e~~ 47 (83)
T 3bzy_B 16 PLPLVIETG-KD--AKALQIIKLAELYDIPVIEDI 47 (83)
T ss_dssp SSCEEEEEE-ET--HHHHHHHHHHHHTTCCEEECH
T ss_pred CCCEEEEEe-Cc--HHHHHHHHHHHHcCCCEEeCH
Confidence 356666432 11 267889999999999999754
No 176
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=21.42 E-value=80 Score=27.17 Aligned_cols=44 Identities=14% Similarity=0.056 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEe
Q 009060 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (545)
Q Consensus 224 ~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~t 268 (545)
.+++++++|.++++.++++|.|.... ....+.....++|.++..
T Consensus 37 ~i~~~~~~i~~a~~~I~i~G~G~S~~-~a~~~~~~l~~~g~~~~~ 80 (183)
T 2xhz_A 37 NFTLACEKMFWCKGKVVVMGMGASGH-IGRKMAATFASTGTPSFF 80 (183)
T ss_dssp HHHHHHHHHHTCSSCEEEEECHHHHH-HHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHhCCCeEEEEeecHHHH-HHHHHHHHHHhcCceEEE
Confidence 78999999999986789999886432 333333333456777754
No 177
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=21.30 E-value=30 Score=38.09 Aligned_cols=107 Identities=20% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh------cCCCEEEcCccccccchHHHHHHHH-HHhCCceEeCCC---CccCCCCCCCCccceecC--
Q 009060 222 EAAVEATADFLNK------AVKPVLVGGPNIRVAKAQKAFIELA-DATGYPIAIMPS---GKGLVPEHHPHFIGTYWG-- 289 (545)
Q Consensus 222 ~~~i~~~~~~l~~------a~rpvi~~G~g~~~~~a~~~l~~la-e~~~~Pv~tt~~---~kg~~~~~hpl~~G~~~G-- 289 (545)
+++++.+++.|++ .+...++.| +... ..+.+|+ +.+|.+-+.+.. ..+.-...+...+|...+
T Consensus 118 deAl~~ia~~l~~i~~~~G~~~i~~~~~-~~~e----~~~~~~~r~~~Gt~n~~~~~~~~c~~~~~~~~~~~~G~~~~~~ 192 (765)
T 2vpz_A 118 EEALDHIAKKMLEIREKYGPEAIAFFGH-GTGD----YWFVDFLPAAWGSPNAAKPSVSLCTAPREVASQWVFGRPIGGH 192 (765)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGCEEEEC-STTH----HHHTTTHHHHHTCCCEECHHHHTTTHHHHHHHHHHSSSCCCSS
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEEcC-CCcH----HHHHHHHHHhcCCCccCCCcccccccHHHHHHHhhcCCCCCCC
Q ss_pred CCCCHHHHHHhhcCCEEEEeCCCCCCCcc-cccccCC----CCCcEEEEcCCcce
Q 009060 290 AVSSSFCGEIVESADAYVFVGPIFNDYSS-VGYSLLI----KKEKAIIVQPHRVT 339 (545)
Q Consensus 290 ~~~~~~~~~~l~~aD~vl~lG~~~~~~~~-~~~~~~~----~~~~~i~id~d~~~ 339 (545)
.... +.++|+||++|+...+... ..+..+. ++.|+|.||+....
T Consensus 193 ~~~d------~~~ad~il~~G~n~~~~~p~~~~~~~~~a~~~G~klividPr~t~ 241 (765)
T 2vpz_A 193 EPID------WENARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDPRFST 241 (765)
T ss_dssp CCCC------GGGCSEEEEESCCBTTBCCHHHHHHHHHHHHTTCEEEEECSBCCT
T ss_pred Cccc------cccCCEEEEEeCChhhcCChHHHHHHHHHHHCCCEEEEECCCCCc
No 178
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=20.87 E-value=96 Score=35.65 Aligned_cols=97 Identities=13% Similarity=-0.003 Sum_probs=58.5
Q ss_pred eEEEEcCCcchH----HHHHHHHHhHhcCCc---EEEEeCCCCCcccCCCcccccccCCCChHHHHHHhhhceeEEEEeC
Q 009060 91 GACVVTFTVGGL----SVLNAIAGAYSENLP---VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN 163 (545)
Q Consensus 91 gv~~~t~GpG~~----n~~~~l~~A~~~~~P---llvi~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~ 163 (545)
.++++..|=|+. ...-++.-|...+.| +|+|.-+....... .. .+....... .+.++.+---..++.
T Consensus 523 ~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist-~~--~~~~s~~~~---~~~a~a~G~p~~~Vd 596 (1113)
T 2xt6_A 523 VVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTT-AP--TDSRSSEYC---TDVAKMIGAPIFHVN 596 (1113)
T ss_dssp EEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTB-CH--HHHCSSSST---TGGGGGGTCCEEEEE
T ss_pred cEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCccccc-Cc--cccccccCH---HHHHHhcCCcEEEEc
Confidence 567777788873 445556667778888 98888653221111 00 000000111 134444433345665
Q ss_pred --ChhhHHHHHHHHHHHhhhCCCcEEEEeCCC
Q 009060 164 --NLGDAHELIDTAISTALKESKPVYISISCN 193 (545)
Q Consensus 164 --~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 193 (545)
+++.+...+++|++.+....||+.|++-.-
T Consensus 597 G~D~~av~~a~~~A~~~~r~~~~PvlIe~~ty 628 (1113)
T 2xt6_A 597 GDDPEACAWVARLAVDFRQAFKKDVVIDMLCY 628 (1113)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeE
Confidence 788888888899888888889999997643
No 179
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=20.79 E-value=12 Score=42.51 Aligned_cols=112 Identities=10% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhc-----------------CCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCcc
Q 009060 222 EAAVEATADFLNKA-----------------VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFI 284 (545)
Q Consensus 222 ~~~i~~~~~~l~~a-----------------~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~ 284 (545)
+++++.+++.|++. ..-+.+.|++....+..-.+.+|++.+|.+-+.+......-+...-+..
T Consensus 89 deAl~~ia~~l~~i~~~~g~~~~~~G~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~~~ 168 (977)
T 1h0h_A 89 DWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMDNEECWIYQAWLRSLGLFYIEHQARIXHSATVAALAE 168 (977)
T ss_dssp HHHHHHHHHHHHHHHHHHEEEECTTSCEEEEECSEEEECCTTSCHHHHHHHHHHHHHTTBCCEECTHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccccccCceEEEEeCCCcccHHHHHHHHHHHHcCCCccccccccccchHHHHHHH
Q ss_pred ceecCCCCCHHHHHHhhcCCEEEEeCCCCCCCcccccccCC----CCCcEEEEcC
Q 009060 285 GTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLI----KKEKAIIVQP 335 (545)
Q Consensus 285 G~~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~----~~~~~i~id~ 335 (545)
.. |.........-+.++|+||++|+...+.....+..+. ++.|+|.||+
T Consensus 169 ~~--G~~~~~~~~~D~~~ad~il~~G~N~~~~~p~~~~~~~~a~~~G~klivIDP 221 (977)
T 1h0h_A 169 SY--GRGAMTNHWIDLKNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDP 221 (977)
T ss_dssp HH--SCCSCSSCTGGGGGCSEEEEESCCHHHHSTTHHHHHHHHHHTTCEEEEECS
T ss_pred Hh--CCCCCCCCHHHHhhCCEEEEECCChHHhCcHHHHHHHHHHHCCCeEEEECC
No 180
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=20.79 E-value=1.1e+02 Score=22.88 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCEEEcCccccccchHHHHHHHHHHhCCceEeCC
Q 009060 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (545)
Q Consensus 226 ~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (545)
++..+.|++.+--++++-..+.. .....+..+++..++|++...
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~-~~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 17 KQTVKALKRGSVKEVVVAKDADP-ILTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHHTTTCEEEEEEETTSCH-HHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHcCCeeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 45566777666556665555543 577889999999999998754
No 181
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=20.46 E-value=1.2e+02 Score=23.86 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=28.3
Q ss_pred CCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHcCCC
Q 009060 7 MGSTGQPGSAPAPVRGGASVGTLGRHLARRLVEIGAK 43 (545)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~L~~~GV~ 43 (545)
-|++++|.+.+..++. ....++.|-+.|+.++|.
T Consensus 3 ~~~~~~~~~~~~~~~i---Tk~I~~~Ik~~Lk~~~is 36 (101)
T 1wiz_A 3 SGSSGKPEPTNSSVEV---SPDIYQQVRDELKRASVS 36 (101)
T ss_dssp CCCCCCCCCCCCSCCC---CTTHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCcccchhHh---hHHHHHHHHHHHHHcCCC
Confidence 4788888888877777 578999999999999885
No 182
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=20.18 E-value=3.9e+02 Score=22.63 Aligned_cols=90 Identities=12% Similarity=0.014 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCCCEEEecCCCChHHHHHh----hhcCCCCeEEecC---chhHHHHHHhHHhhhcCceEEEEcCCcc-h
Q 009060 30 GRHLARRLVEIGAKDVFSVPGDFNLTLLDH----LIAEPELNLVGCC---NELNAGYAADGYARSRGVGACVVTFTVG-G 101 (545)
Q Consensus 30 a~~i~~~L~~~GV~~vFg~pG~~~~~l~~a----l~~~~~i~~i~~~---hE~~A~~~A~gyar~tg~gv~~~t~GpG-~ 101 (545)
-+.+++.|.+..-=++||+-++. .+... +.+ -++.++... ++.. .-....+.--++++.|-.| .
T Consensus 29 l~~~~~~i~~a~~I~i~G~G~S~--~~a~~~~~~l~~-~g~~~~~~~~~~~~~~-----~~~~~~~~~d~~i~iS~sG~t 100 (187)
T 3sho_A 29 IEAAVEAICRADHVIVVGMGFSA--AVAVFLGHGLNS-LGIRTTVLTEGGSTLT-----ITLANLRPTDLMIGVSVWRYL 100 (187)
T ss_dssp HHHHHHHHHHCSEEEEECCGGGH--HHHHHHHHHHHH-TTCCEEEECCCTHHHH-----HHHHTCCTTEEEEEECCSSCC
T ss_pred HHHHHHHHHhCCEEEEEecCchH--HHHHHHHHHHHh-cCCCEEEecCCchhHH-----HHHhcCCCCCEEEEEeCCCCC
Confidence 46678888887655556654433 33332 333 245444433 3321 1112333223344444455 4
Q ss_pred HHHHHHHHHhHhcCCcEEEEeCCCCC
Q 009060 102 LSVLNAIAGAYSENLPVICIVGGPNS 127 (545)
Q Consensus 102 ~n~~~~l~~A~~~~~Pllvi~g~~~~ 127 (545)
.+.+..+..|...+.|+|.||+....
T Consensus 101 ~~~~~~~~~ak~~g~~vi~IT~~~~s 126 (187)
T 3sho_A 101 RDTVAALAGAAERGVPTMALTDSSVS 126 (187)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCTTS
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 57778888899999999999986543
No 183
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=20.16 E-value=56 Score=32.54 Aligned_cols=77 Identities=18% Similarity=0.196 Sum_probs=46.2
Q ss_pred HHHHHHHHHHh--cCCCEEEcCccccccchHHHHHHHHHHhCCceEeCCCCccCCCCCCCCccceecCCCCCHHHHHHh-
Q 009060 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (545)
Q Consensus 224 ~i~~~~~~l~~--a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hpl~~G~~~G~~~~~~~~~~l- 300 (545)
.++++.+.+++ .+|++|+.|......+..+.+.+..++.|+.+..-. ++ +.+|-.--+ ....+.+
T Consensus 18 ~~~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~---~v--~~~p~~~~v-------~~~~~~~~ 85 (383)
T 3ox4_A 18 SLEKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYD---GV--MPNPTVTAV-------LEGLKILK 85 (383)
T ss_dssp HHHHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEE---EE--CSSCBHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEEC---Cc--cCCCCHHHH-------HHHHHHHH
Confidence 34555566654 478999999877665667888888888888774311 00 123332211 1222222
Q ss_pred -hcCCEEEEeCCC
Q 009060 301 -ESADAYVFVGPI 312 (545)
Q Consensus 301 -~~aD~vl~lG~~ 312 (545)
.++|+||.||.-
T Consensus 86 ~~~~D~IIavGGG 98 (383)
T 3ox4_A 86 DNNSDFVISLGGG 98 (383)
T ss_dssp HHTCSEEEEEESH
T ss_pred hcCcCEEEEeCCc
Confidence 478999999953
Done!