Citrus Sinensis ID: 009062

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-----

MLLADFAVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVGVGMSMEGIEQNPVVYDLMSEMAFQHEKVDVKAWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLTNDWQNGRNVYPVESNGDALITSQWLYNKYLQGTGVFDH

cccccEEccccccccccHHHHHHccccEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccHHHHHHHHHccccccEEEEEccccccccccccccccccccccEEcccccccccccccHHHHHccHHHHHHcccccEEEEEEccccccccHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccEEcccccccccccccccccccccccccHHHHHcccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccccccc

cccccccccccccccccHHHHHHccccEEEEcccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccHHHHHHHHHHHHHHHHHccccHEEEEHHHHHccccccccHHHHHHHHccccccEEEEEccccccccEEccHccccccEEEEEEccccccccccccHHHHHccHHHHHccccccEEEEEccHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccEEEEcccccccccccccccccccccccccccHccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccc

mlladfavlpafsgnvpaalqnvfpsakitqlgnwfsvksdprwcctylldatdpLFIEIGRAFIEQQLKEygrtshiyncdtfdentppvdspeyiSSLGAAIYsgmqsgdsDAVWLMQGWlfsydpfwrppqmkallnsvplgkLVVLDLFAevkpiwstskqfygVPYIWCMLHNfagniemygildsiafgpveartsenttmvgvgmsmegieqnPVVYDLMSEMAFQHEKVDVKAWINQYSvrrygrsvpaIQDAWNVLYHTVynctdgatdknrdvivafpdvdpsiisvtegkyqnygkpvskeavlksetssydhphlwysTSEVIRALELFIASgnelsasntyrydlIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGllachdgfllgpWLESAKQLAQNEEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIEslesgdgfrlkDWRREWIKLTNdwqngrnvypvesngdaLITSQWLYNKYlqgtgvfdh

MLLADFAVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVGVGMSMEGIEQNPVVYDLMSEMAFQHEKVDVKAWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPdvdpsiisvtegkyqnygkpVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLtndwqngrnvyPVESNGDALITSQWLYNKYLQGTGVFDH

**LADFAVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENT*****PEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVGVGMSMEGIEQNPVVYDLMSEMAFQHEKVDVKAWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPV****V******SYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAK**********QYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLTNDWQNGRNVYPVESNGDALITSQWLYNKYLQGTGV***

MLLADFAVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVGVGMSMEGIEQNPVVYDLMSEMAFQHEKVDVKAWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQ**********YEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLTNDWQNGRNVYPVESNGDALITSQWLYNKYLQGTGVFDH

*LLADFAVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVGVGMSMEGIEQNPVVYDLMSEMAFQHEKVDVKAWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLTNDWQNGRNVYPVESNGDALITSQWLYNKYLQGTG****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		545	2.2.26 [Sep-21-2011]
P54802		743	Alpha-N-acetylglucosamini	yes	no	0.899	0.659	0.369	3e-99

>sp\|P54802\|ANAG_HUMAN Alpha-N-acetylglucosaminidase OS=Homo sapiens GN=NAGLU PE=1 SV=2	Back alignment and function desciption

 Score =  362 bits (930), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 197/533 (36%), Positives = 303/533 (56%), Gaps = 43/533 (8%)

Query: 8   VLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQ 67
           VLPAF+G+VP A+  VFP   +T++G+W        + C++LL   DP+F  IG  F+ +
Sbjct: 241 VLPAFAGHVPEAVTRVFPQVNVTKMGSWGHFNCS--YSCSFLLAPEDPIFPIIGSLFLRE 298

Query: 68  QLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYD 127
            +KE+G T HIY  DTF+E  PP   P Y+++   A+Y  M + D++AVWL+QGWLF + 
Sbjct: 299 LIKEFG-TDHIYGADTFNEMQPPSSEPSYLAAATTAVYEAMTAVDTEAVWLLQGWLFQHQ 357

Query: 128 P-FWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMY 186
           P FW P Q++A+L +VP G+L+VLDLFAE +P+++ +  F G P+IWCMLHNF GN  ++
Sbjct: 358 PQFWGPAQIRAVLGAVPRGRLLVLDLFAESQPVYTRTASFQGQPFIWCMLHNFGGNHGLF 417

Query: 187 GILDSIAFGPVEARTSENTTMVGVGMSMEGIEQNPVVYDLMSEMAFQHEKV-DVKAWINQ 245
           G L+++  GP  AR   N+TMVG GM+ EGI QN VVY LM+E+ ++ + V D+ AW+  
Sbjct: 418 GALEAVNGGPEAARLFPNSTMVGTGMAPEGISQNEVVYSLMAELGWRKDPVPDLAAWVTS 477

Query: 246 YSVRRYGRSVPAIQDAWNVLYHTVYNCT-DGATDKNRDVIVAFPDVDPSIISVTEGKYQN 304
           ++ RRYG S P    AW +L  +VYNC+ +     NR  +V  P                
Sbjct: 478 FAARRYGVSHPDAGAAWRLLLRSVYNCSGEACRGHNRSPLVRRPS--------------- 522

Query: 305 YGKPVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQ 364
                     L+  TS      +WY+ S+V  A  L + S   L+ S  +RYDL+DLTRQ
Sbjct: 523 ----------LQMNTS------IWYNRSDVFEAWRLLLTSAPSLATSPAFRYDLLDLTRQ 566

Query: 365 ALAKYANELFLNIIEAYQLNDAHGVFQLSRRFL-ELVEDMDGLLACHDGFLLGPWLESAK 423
           A+ +  +  +     AY   +   + +       EL+  +D +LA    FLLG WLE A+
Sbjct: 567 AVQELVSLYYEEARSAYLSKELASLLRAGGVLAYELLPALDEVLASDSRFLLGSWLEQAR 626

Query: 424 QLAQNEEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKY 483
             A +E +   YE N+R Q+T+W      E ++L DY NK  +GL+ +YY PR  ++ + 
Sbjct: 627 AAAVSEAEADFYEQNSRYQLTLW----GPEGNIL-DYANKQLAGLVANYYTPRWRLFLEA 681

Query: 484 MIESLESGDGFRLKDWRREWIKLTNDWQNGRNVYPVESNGDALITSQWLYNKY 536
           +++S+  G  F+   + +   +L   +   +  YP +  GD +  ++ ++ KY
Sbjct: 682 LVDSVAQGIPFQQHQFDKNVFQLEQAFVLSKQRYPSQPRGDTVDLAKKIFLKY 734

Involved in the degradation of heparan sulfate.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 5EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		545
255540793		809	alpha-n-acetylglucosaminidase, putative	0.987	0.665	0.812	0.0
225457148		813	PREDICTED: alpha-N-acetylglucosaminidase	0.985	0.660	0.807	0.0
224121634		812	predicted protein [Populus trichocarpa]	0.987	0.662	0.789	0.0
356519003		812	PREDICTED: alpha-N-acetylglucosaminidase	0.970	0.651	0.8	0.0
297733843		846	unnamed protein product [Vitis vinifera]	0.985	0.634	0.745	0.0
449441031		808	PREDICTED: alpha-N-acetylglucosaminidase	0.970	0.654	0.770	0.0
222629680		1129	hypothetical protein OsJ_16433 [Oryza sa	0.976	0.471	0.676	0.0
326515664		829	predicted protein [Hordeum vulgare subsp	0.972	0.639	0.677	0.0
326519955		829	predicted protein [Hordeum vulgare subsp	0.972	0.639	0.677	0.0
414585092		831	TPA: hypothetical protein ZEAMMB73_33722	0.974	0.638	0.681	0.0

>gi\|255540793\|ref\|XP_002511461.1\| alpha-n-acetylglucosaminidase, putative [Ricinus communis] gi\|223550576\|gb\|EEF52063.1\| alpha-n-acetylglucosaminidase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  935 bits (2417), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/539 (81%), Positives = 491/539 (91%), Gaps = 1/539 (0%)

Query: 8   VLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQ 67
           VLPAFSGNVPAAL+N+FPSAKI +LGNWFSVKSD RWCCTYLLDATDPLFIEIGRAFIEQ
Sbjct: 271 VLPAFSGNVPAALRNIFPSAKIARLGNWFSVKSDLRWCCTYLLDATDPLFIEIGRAFIEQ 330

Query: 68  QLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYD 127
           QL+EYG TSHIYNCDTFDENTPPVD P+YIS+LGAA++ GMQSGD+DAVWLMQGWLFSYD
Sbjct: 331 QLEEYGSTSHIYNCDTFDENTPPVDDPKYISALGAAVFKGMQSGDNDAVWLMQGWLFSYD 390

Query: 128 PFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYG 187
           PFWRPPQMKALL+SVP+G+LVVLDLFAEVKPIW++S QFYGVPYIWCMLHNFAGN+EMYG
Sbjct: 391 PFWRPPQMKALLHSVPVGRLVVLDLFAEVKPIWTSSYQFYGVPYIWCMLHNFAGNVEMYG 450

Query: 188 ILDSIAFGPVEARTSENTTMVGVGMSMEGIEQNPVVYDLMSEMAFQHEKVDVKAWINQYS 247
           ILDSIA GPVEARTSEN+TMVGVGMSMEGIEQNPVVYDLMSEMAFQH+KVDVKAWIN YS
Sbjct: 451 ILDSIASGPVEARTSENSTMVGVGMSMEGIEQNPVVYDLMSEMAFQHKKVDVKAWINLYS 510

Query: 248 VRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGK 307
            RRYGRSVP+IQDAW++LYHTVYNCTDGA DKNRDVIVAFPDV+P   SV++ ++   GK
Sbjct: 511 TRRYGRSVPSIQDAWDILYHTVYNCTDGAYDKNRDVIVAFPDVNPFYFSVSQKRHHLNGK 570

Query: 308 PVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALA 367
           PVS+ AVLK  + SYDHPHLWYSTSEV+ ALELFI SG ELS S+TY YDL+DLTRQALA
Sbjct: 571 PVSRRAVLKENSDSYDHPHLWYSTSEVLHALELFITSGEELSGSSTYSYDLVDLTRQALA 630

Query: 368 KYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQ 427
           KY NELFL IIE+YQ ND +GV   S++FL+LVEDMD LL CH+GFLLGPWLESAKQLAQ
Sbjct: 631 KYGNELFLKIIESYQANDGNGVASRSQKFLDLVEDMDTLLGCHEGFLLGPWLESAKQLAQ 690

Query: 428 NEEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIES 487
           ++EQEKQ+EWNARTQITMWFDNT++EASLL DYGNKYWSGLL+DYYGPRAAIYFKY+I+S
Sbjct: 691 DQEQEKQFEWNARTQITMWFDNTEDEASLLHDYGNKYWSGLLQDYYGPRAAIYFKYLIKS 750

Query: 488 LESGDGFRLKDWRREWIKLTNDWQNGRNVYPVESNGDALITSQWLYNKYLQGTG-VFDH 545
           LE+G  F LKDWRREWIKLTN+WQ  RN +PV+SNG+ALI S+WLY+KYL+     +DH
Sbjct: 751 LENGKVFPLKDWRREWIKLTNEWQRSRNKFPVKSNGNALIISKWLYDKYLRNPDTTYDH 809

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225457148\|ref\|XP_002280399.1\| PREDICTED: alpha-N-acetylglucosaminidase-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224121634\|ref\|XP_002318632.1\| predicted protein [Populus trichocarpa] gi\|222859305\|gb\|EEE96852.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356519003\|ref\|XP_003528164.1\| PREDICTED: alpha-N-acetylglucosaminidase-like [Glycine max]	Back alignment and taxonomy information

>gi\|297733843\|emb\|CBI15090.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449441031\|ref\|XP_004138287.1\| PREDICTED: alpha-N-acetylglucosaminidase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|222629680\|gb\|EEE61812.1\| hypothetical protein OsJ_16433 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|326515664\|dbj\|BAK07078.1\| predicted protein [Hordeum vulgare subsp. vulgare]	Back alignment and taxonomy information

>gi\|326519955\|dbj\|BAK03902.1\| predicted protein [Hordeum vulgare subsp. vulgare]	Back alignment and taxonomy information

>gi\|414585092\|tpg\|DAA35663.1\| TPA: hypothetical protein ZEAMMB73_337226 [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		545
TAIR\|locus:2173209		806	CYL1 "AT5G13690" [Arabidopsis	0.968	0.655	0.598	5.7e-178
RGD\|1564228		739	Naglu "N-acetylglucosaminidase	0.519	0.382	0.470	1.6e-100
UNIPROTKB\|P54802		743	NAGLU "Alpha-N-acetylglucosami	0.513	0.376	0.451	2.9e-97
UNIPROTKB\|H9L296		601	H9L296 "Uncharacterized protei	0.572	0.519	0.421	6.1e-95
FB\|FBgn0014417		778	CG13397 [Drosophila melanogast	0.477	0.334	0.387	5.9e-83
UNIPROTKB\|F1S1D7		744	NAGLU "Uncharacterized protein	0.680	0.498	0.398	5.5e-70
UNIPROTKB\|A6QM01		667	NAGLU "NAGLU protein" [Bos tau	0.704	0.575	0.384	2.4e-69
DICTYBASE\|DDB_G0291998		798	naglu "alpha-N-acetylglucosami	0.631	0.431	0.352	1.7e-57

TAIR\|locus:2173209 CYL1 "AT5G13690" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1728 (613.3 bits), Expect = 5.7e-178, P = 5.7e-178
 Identities = 322/538 (59%), Positives = 404/538 (75%)

Query:     8 VLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQ 67
             VLP+FSGNVP+AL+ ++P A IT+L NW +V  D RWCCTYLL+ +DPLFIEIG AFI+Q
Sbjct:   268 VLPSFSGNVPSALRKIYPEANITRLDNWNTVDGDSRWCCTYLLNPSDPLFIEIGEAFIKQ 327

Query:    68 QLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYD 127
             Q +EYG  ++IYNCDTF+ENTPP   PEYISSLGAA+Y  M  G+ +AVWLMQGWLFS D
Sbjct:   328 QTEEYGEITNIYNCDTFNENTPPTSEPEYISSLGAAVYKAMSKGNKNAVWLMQGWLFSSD 387

Query:   128 P-FWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMY 186
               FW+PPQ+KALL+SVP GK++VLDL+AEVKPIW+ S QFYG PYIWCMLHNF GNIEMY
Sbjct:   388 SKFWKPPQLKALLHSVPFGKMIVLDLYAEVKPIWNKSAQFYGTPYIWCMLHNFGGNIEMY 447

Query:   187 GILDSIAFGPVEARTSENTTMVGVGMSMEGIEQNPVVYDLMSEMAFQHEKVDVKAWINQY 246
             G LDSI+ GPV+AR S+N+TMVGVGM MEGIEQNPVVY+L SEMAF+ EKVDV+ W+  Y
Sbjct:   448 GALDSISSGPVDARVSKNSTMVGVGMCMEGIEQNPVVYELTSEMAFRDEKVDVQKWLKSY 507

Query:   247 SVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQ--N 304
             + RRY +    I+ AW +LYHTVYNCTDG  D N D IV  PD DPS  SV +   Q  +
Sbjct:   508 ARRRYMKENHQIEAAWEILYHTVYNCTDGIADHNTDFIVKLPDWDPSS-SVQDDLKQKDS 566

Query:   305 Y----GKPVSKEAVL-KSETSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLI 359
             Y    G   +K  VL + +T+     HLWYST EVI+AL+LF+ +G++LS S TYRYD++
Sbjct:   567 YMISTGPYETKRRVLFQDKTADLPKAHLWYSTKEVIQALKLFLEAGDDLSRSLTYRYDMV 626

Query:   360 DLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWL 419
             DLTRQ L+K AN+++   + A+   D   + QLS +FLEL++DMD LLA  D  LLG WL
Sbjct:   627 DLTRQVLSKLANQVYTEAVTAFVKKDIGSLGQLSEKFLELIKDMDVLLASDDNCLLGTWL 686

Query:   420 ESAKQLAQNEEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAI 479
             ESAK+LA+N ++ KQYEWNARTQ+TMW+D+     S L DY NK+WSGLL DYY PRA +
Sbjct:   687 ESAKKLAKNGDERKQYEWNARTQVTMWYDSNDVNQSKLHDYANKFWSGLLEDYYLPRARL 746

Query:   480 YFKYMIESLESGDGFRLKDWRREWIKLTNDWQNGRN-VYPVESNGDALITSQWLYNKY 536
             YF  M++SL     F+++ WRREWI +++ WQ   + VYPV++ GDAL  S+ L +KY
Sbjct:   747 YFNEMLKSLRDKKIFKVEKWRREWIMMSHKWQQSSSEVYPVKAKGDALAISRHLLSKY 804

GO:0004561 "alpha-N-acetylglucosaminidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

RGD\|1564228 Naglu "N-acetylglucosaminidase, alpha" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|P54802 NAGLU "Alpha-N-acetylglucosaminidase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|H9L296 H9L296 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

FB\|FBgn0014417 CG13397 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S1D7 NAGLU "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|A6QM01 NAGLU "NAGLU protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0291998 naglu "alpha-N-acetylglucosaminidase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.2.1	LOW CONFIDENCE prediction!
3rd Layer	3.2.1.50	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		545
pfam05089		333	pfam05089, NAGLU, Alpha-N-acetylglucosaminidase (N	1e-108
pfam12972		269	pfam12972, NAGLU_C, Alpha-N-acetylglucosaminidase	1e-104

>gnl\|CDD\|218423 pfam05089, NAGLU, Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain	Back alignment and domain information

 Score =  325 bits (836), Expect = e-108
 Identities = 113/229 (49%), Positives = 154/229 (67%), Gaps = 7/229 (3%)

Query: 8   VLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQ 67
           VLPAF+G+VP AL+  +P A IT+ G W        +   Y LD TDPLF +I   F+E+
Sbjct: 112 VLPAFAGHVPRALKRKYPEANITRQGRWGG------FHRPYFLDPTDPLFAKIAARFLEE 165

Query: 68  QLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYD 127
           Q K YG T HIY+ D F+E  PP   P+Y+++ G AIY  MQ  D DAVW++QGWLF   
Sbjct: 166 QKKLYG-TDHIYSADPFNEGGPPSGDPDYLAAAGQAIYKSMQKADPDAVWVLQGWLFVDS 224

Query: 128 PFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYG 187
            FW+   ++A L++VP G+L+VLDLF+E  P W  ++ FYG P+IWCMLHNF GN  +YG
Sbjct: 225 DFWQANPIEAFLSAVPKGRLLVLDLFSERYPQWKRTESFYGKPWIWCMLHNFGGNTGLYG 284

Query: 188 ILDSIAFGPVEARTSENTTMVGVGMSMEGIEQNPVVYDLMSEMAFQHEK 236
            LD +A G   AR +  + +VGVG++ EGIEQNPVVY+L+ E+A++ + 
Sbjct: 285 NLDLVASGIEAARANPGSNLVGVGITPEGIEQNPVVYELLLELAWREDP 333

Alpha-N-acetylglucosaminidase, a lysosomal enzyme required for the stepwise degradation of heparan sulfate. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterized by neurological dysfunction but relatively mild somatic manifestations. The structure shows that the enzyme is composed of three domains. This central domain has a tim barrel fold. Length = 333

>gnl\|CDD\|221877 pfam12972, NAGLU_C, Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		545
KOG2233		666	consensus Alpha-N-acetylglucosaminidase [Intracell	100.0
PF05089		333	NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-b	100.0
PF12972		267	NAGLU_C: Alpha-N-acetylglucosaminidase (NAGLU) C-t	100.0
PF02449		374	Glyco_hydro_42: Beta-galactosidase; InterPro: IPR0	84.76

>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=4.5e-157  Score=1220.90  Aligned_cols=500  Identities=43%  Similarity=0.824  Sum_probs=482.5

Q ss_pred             CCCCCeecCCCCCCCCchhhHhhCCCCceeccCCCCCCCCCCccccccccCCCChHHHHHHHHHHHHHHHHhCCCCcccc
Q 009062            1 MLLADFAVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYN   80 (545)
Q Consensus         1 ~~LGM~PVLPgF~G~VP~~~k~~~P~a~i~~~~~W~gf~~~~~~~~~~~LdP~DplF~~I~~~F~~~q~~~yG~~~h~Y~   80 (545)
                      ++||||||||+|+||||++++++||.+++++++.|+.|+  .+|||.++|.|+||||.+||.+|+++|+|+||.++|+|+
T Consensus       164 ~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~--s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~tniy~  241 (666)
T KOG2233|consen  164 LELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFT--SRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGVTNIYS  241 (666)
T ss_pred             HHcCCCccchhhccccHHHHHHhCchhceeeccccCCCC--cceeeeEEccCCcchHHHHHHHHHHHHHHHhCCcccccc
Confidence            479999999999999999999999999999999999997  699999999999999999999999999999998899999


Q ss_pred             CCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCceEEEecccCCCCCCCCchhHHHhhhCCCCCCEEEEecCCCccccc
Q 009062           81 CDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIW  160 (545)
Q Consensus        81 ~D~FnE~~pp~~d~~~L~~~~~~i~~am~~adP~AvWvmQgW~F~~~~fW~~~~~~a~L~~Vp~~~mliLDL~~E~~p~W  160 (545)
                      ||||||+.||+++|+|+++.+.+||+||+++||+||||||||+|.+|+||+++++||||++||.|+||||||++|+.|+|
T Consensus       242 ~DpFNE~~Pp~sepey~~staaAiyesm~kvdknaVWllQgWlF~~d~FW~~~~ikafL~avP~GrllVLDLyaEv~P~~  321 (666)
T KOG2233|consen  242 ADPFNEILPPESEPEYVKSTAAAIYESMKKVDKNAVWLLQGWLFTYDPFWPPWQIKAFLSAVPRGRLLVLDLYAEVVPAW  321 (666)
T ss_pred             cCcccccCCCCCChHHHHHHHHHHHHHHhccCcceEEeeecceeecCCCCChHHHHHHHhcCCcCcEEEEehhhhhhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCceeeeccCCCCccccccchhhhhcChHHhhhCCCCceEEEEeCccccccChhHHHHHHhhcCCCCCCCHH
Q 009062          161 STSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVGVGMSMEGIEQNPVVYDLMSEMAFQHEKVDVK  240 (545)
Q Consensus       161 ~~~~~f~G~pwIWc~LhNFGG~~gl~G~l~~i~~~~~~a~~~~~~~m~GiG~tpEGie~NpvvYeL~~d~aW~~~~id~~  240 (545)
                      ++|.+|+|||||||||||||||.+|+|.++.|..||.+|+..+||+|||+||+||||+||||||+||.|++|+++++|++
T Consensus       322 ~~Tasf~GqpfIWCmLHNFGGn~~lfGal~~InsG~e~Ar~~~nStlVGtGm~~EgI~QN~VvYsf~~e~~wsde~ldl~  401 (666)
T KOG2233|consen  322 QMTASFQGQPFIWCMLHNFGGNRELFGALQKINSGPELARMKPNSTLVGTGMSMEGIDQNYVVYSFMIERGWSDEPLDLN  401 (666)
T ss_pred             HhhhhhcCCceeEEEeeccCCcHhhhhhHHHhccCHHHHhcCCCCceeecccCccccccchhhHHHHHHhccCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccCCCChHHHHHHHHHHhcccCCCCCCCCCC-CcceeccCCCCCCcccccccccccCCCCccccccccccC
Q 009062          241 AWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKN-RDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSET  319 (545)
Q Consensus       241 ~Wl~~Ya~rRYG~~~~~~~~AW~iL~~tvY~~~~~~~~~~-~~~i~~~P~l~p~~~~~~~~~~~~~~~~~~r~~~~~~~~  319 (545)
                      .|+++|+++|||..++.+++||.+|.+|||||+++...++ +..+..||+++                            
T Consensus       402 ~Wlksys~sRY~~~~~~~eaaW~lL~~tvYn~~~~~~~~~~~~~l~rRp~f~----------------------------  453 (666)
T KOG2233|consen  402 NWLKSYSESRYGVDFKVAEAAWTLLAGTVYNCPGKWATRGFSYFLYRRPSFQ----------------------------  453 (666)
T ss_pred             HHHHHHHHhhhccchHHHHHHHHHHhhhhcCCCcccccCCCceeeEeccccc----------------------------
Confidence            9999999999999999999999999999999998776655 55566667653                            


Q ss_pred             CCCCCCCCcCCHHHHHHHHHHHHhccccCCCC-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 009062          320 SSYDHPHLWYSTSEVIRALELFIASGNELSAS-NTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLE  398 (545)
Q Consensus       320 ~~~~~~~~~Yd~~~l~~A~~lll~~~~~l~~s-~~y~yDLvDvtRQvL~n~a~~~~~~~~~Ay~~~d~~~~~~~~~~fl~  398 (545)
                         .++.+||+.+++..||++||.+.+.+..+ ++|||||||+|||+|+..++++|.++.+||..+|...+.+.|.++++
T Consensus       454 ---~k~~~Wyn~sev~~a~rllL~a~~~l~~e~~~fr~DlvDltRq~lqelanq~y~e~~sAflkkd~~sl~~~~~~lle  530 (666)
T KOG2233|consen  454 ---RKTEYWYNVSEVFSAWRLLLTALVHLLGEHPLFRYDLVDLTRQMLQELANQAYLEARSAFLKKDKQSLGALSEKLLE  530 (666)
T ss_pred             ---CCceeeecHHHHHHHHHHHHhhhhhhccCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               14678999999999999999998777666 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCCChHHHHHHHHhhCCCHHHHHHHHHHhhhcccccCCCCCcCCCCCcccccccccchhhhhhHHHHH
Q 009062          399 LVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAA  478 (545)
Q Consensus       399 li~dlD~LL~t~~~FlLg~Wi~~Ar~~g~~~~ek~~yE~NAR~qIT~WG~~~~~~~~~L~DYA~K~WsGL~~dyY~pRW~  478 (545)
                      |++|||.+|+++.+|+||+||++||+.|.+.+|++.||+|||+|||+|||.     |+|+||||||||||++|||.|||+
T Consensus       531 lf~dle~~lasd~nfLlg~WleqAk~~A~n~~er~~fe~nar~qlT~Wgp~-----gqilDYA~kqwaGLvsdYY~pRwr  605 (666)
T KOG2233|consen  531 LFQDLESYLASDDNFLLGQWLEQAKSAAPNSEERQVFEVNARDQLTVWGPT-----GQILDYANKQWAGLVSDYYGPRWR  605 (666)
T ss_pred             HHHHHHHHHccCcchhHHHHHHHHHhhCCChhhhhhccccccceEEEECCC-----cchhhHHHHHHHHhhhhcccHHHH
Confidence            999999999999999999999999999999999999999999999999995     689999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCChHHHHHHH-HHHhhhhhcCCCcCCCCCCCcHHHHHHHHHHHHhc
Q 009062          479 IYFKYMIESLESGDGFRLKDWRREW-IKLTNDWQNGRNVYPVESNGDALITSQWLYNKYLQ  538 (545)
Q Consensus       479 ~f~~~l~~~l~~~~~~~~~~~~~~~-~~~E~~W~~~~~~y~~~p~gd~~~~a~~l~~ky~~  538 (545)
                      .|++.+.+++..|++|+.++|..+| ..+|.+++.++.+||++|.||++++++.|+.||++
T Consensus       606 lf~e~il~slhd~~pFn~t~f~~~v~~~~e~~fs~s~~vYPv~p~Gdt~~is~~if~ky~P  666 (666)
T KOG2233|consen  606 LFLEWILESLHDGKPFNHTEFSISVFRDVERPFSISNIVYPVKPKGDTLAISRHIFSKYFP  666 (666)
T ss_pred             HHHHHHHHHHhcCCCccccchhhHHHHhhhccccccccccccCCCccHHHHHHHHHHhcCC
Confidence            9999999999999999999999999 59999999999999999999999999999999973

>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []	Back alignment and domain information

>PF12972 NAGLU_C: Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain; InterPro: IPR024732 Alpha-N-acetylglucosaminidase is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []	Back alignment and domain information

>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		545
2vc9_A		891	Family 89 Glycoside Hydrolase From Clostridium Perf		5e-56
4a4a_A		914	Cpgh89 (E483q, E601q), From Clostridium Perfringens		3e-55

>pdb|2VC9|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens In Complex With 2-Acetamido-1,2-Dideoxynojirmycin Length = 891

Back alignment and structure

Iteration: 1

Score = 215 bits (548), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 150/527 (28%), Positives = 253/527 (48%), Gaps = 49/527 (9%) Query: 8 VLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQ 67 VL +SG VP + A+ G W P TY+ + F ++ F E+ Sbjct: 381 VLQGYSGMVPRDFKEKNQEAQTISQGGWCGFDR-PDMLKTYVNEGEADYFQKVADVFYEK 439 Query: 68 QLKEYGRTSHIYNCDTFDE--NTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFS 125 Q + +G ++ Y D F E NT +D+ + I + M D+DAVW++Q W + Sbjct: 440 QKEVFGDVTNFYGVDPFHEGGNTGDLDN----GKIYEIIQNKMIEHDNDAVWVIQNWQGN 495 Query: 126 YDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEM 185 P L + +VLDLF+EV P W+ ++ +P+IW MLHNF G + M Sbjct: 496 -------PSNNKLEGLTKKDQAMVLDLFSEVSPDWNRLEE-RDLPWIWNMLHNFGGRMGM 547 Query: 186 YGILDSIAFGPVEARTSENTTMVGVGMSMEGIEQNPVVYDLMSEMAFQHEKVDVKAWINQ 245 + +A + + + MVG+G++ E I NP+ Y+L+ +MA+ ++++ + W Sbjct: 548 DAAPEKLA-TEIPKALANSEHMVGIGITPEAINTNPLAYELLFDMAWTRDQINFRTWTED 606 Query: 246 YSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNY 305 Y RRYG++ I +AWN++ T Y K D + SII+ G + Sbjct: 607 YIERRYGKTNKEILEAWNIILDTAYK-------KRNDY---YQGAAESIINARPG----F 652 Query: 306 GKPVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQA 365 G +KS S++ H + Y SE +A+E+F + +E S+ + YD D+ +Q Sbjct: 653 G--------IKS-ASTWGHSKIVYDKSEFEKAIEIFAKNYDEFKDSDAFLYDFADILKQL 703 Query: 366 LAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQL 425 LA A E + + AY + +S +FLEL++ + +L+ FL+G W+E A+ + Sbjct: 704 LANSAQEYYEVMCNAYNNGNGEKFKFVSGKFLELIKLQERVLSTRPEFLIGNWIEDARTM 763 Query: 426 AQNEEQ--EKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKY 483 ++ + + +E+NAR +T W + L+DY N+ WSGL DYY R + Sbjct: 764 LKDSDDWTKDLFEFNARALVTTWGSRNNADGGGLKDYSNRQWSGLTEDYYYARWEKWING 823 Query: 484 MIESLESGDGFRLKDWRREWIKLTNDWQNGRN----VYPVESNGDAL 526 + L+ G K +W K+ DW N ++ +YP E++ + L Sbjct: 824 LQAELDGG----AKAPNIDWFKMEYDWVNKKSDTDKLYPTEASNENL 866

PyMOL of 2vc9

>pdb|4A4A|A Chain A, Cpgh89 (E483q, E601q), From Clostridium Perfringens, In Complex With Its Substrate Glcnac-Alpha-1,4-Galactose Length = 914

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		545
4a4a_A		914	Alpha-N-acetylglucosaminidase family protein; hydr	0.0
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A Length = 914	Back alignment and structure

 Score =  561 bits (1448), Expect = 0.0
 Identities = 137/532 (25%), Positives = 236/532 (44%), Gaps = 38/532 (7%)

Query: 8   VLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQ 67
           VL  +SG VP   +     A+    G W      P    TY+ +     F ++   F E+
Sbjct: 404 VLQGYSGMVPRDFKEKNQEAQTISQGGWCGF-DRPDMLKTYVNEGEADYFQKVADVFYEK 462

Query: 68  QLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYD 127
           Q + +G  ++ Y  D F +             +   I + M   D+DAVW++Q W     
Sbjct: 463 QKEVFGDVTNFYGVDPFHQGGNT--GDLDNGKIYEIIQNKMIEHDNDAVWVIQNW----- 515

Query: 128 PFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYG 187
                P    L       + +VLDLF+EV P W+   +   +P+IW MLHNF G + M  
Sbjct: 516 --QGNPSNNKLEGLTKKDQAMVLDLFSEVSPDWNRL-EERDLPWIWNMLHNFGGRMGMDA 572

Query: 188 ILDSIAFGPVEARTSENTTMVGVGMSMEGIEQNPVVYDLMSEMAFQHEKVDVKAWINQYS 247
             + +A    +A    +  MVG+G++ + I  NP+ Y+L+ +MA+  ++++ + W   Y 
Sbjct: 573 APEKLATEIPKALA-NSEHMVGIGITPQAINTNPLAYELLFDMAWTRDQINFRTWTEDYI 631

Query: 248 VRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGK 307
            RRYG++   I +AWN++  T Y   +       + I+      P               
Sbjct: 632 ERRYGKTNKEILEAWNIILDTAYKKRNDYYQGAAESIINAR---PGF------------- 675

Query: 308 PVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALA 367
                       S++ H  + Y  SE  +A+E+F  + +E   S+ + YD  D+ +Q LA
Sbjct: 676 -------GIKSASTWGHSKIVYDKSEFEKAIEIFAKNYDEFKDSDAFLYDFADILKQLLA 728

Query: 368 KYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQ 427
             A E +  +  AY   +      +S +FLEL++  + +L+    FL+G W+E A+ + +
Sbjct: 729 NSAQEYYEVMCNAYNNGNGEKFKFVSGKFLELIKLQERVLSTRPEFLIGNWIEDARTMLK 788

Query: 428 N--EEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMI 485
           +  +  +  +E+NAR  +T W      +   L+DY N+ WSGL  DYY  R   +   + 
Sbjct: 789 DSDDWTKDLFEFNARALVTTWGSRNNADGGGLKDYSNRQWSGLTEDYYYARWEKWINGLQ 848

Query: 486 ESLESGDGFRLKDWRREWIKLTNDWQNGRNVYPVESNGDALIT-SQWLYNKY 536
             L+ G      DW +      N   +   +YP E++ + L   ++     Y
Sbjct: 849 AELDGGAKAPNIDWFKMEYDWVNKKSDTDKLYPTEASNENLGELAKIAMESY 900

PyMOL of 4a4a

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		545
4a4a_A		914	Alpha-N-acetylglucosaminidase family protein; hydr	100.0
1kwg_A		645	Beta-galactosidase; TIM barrel, glycoside hydrolas	86.59
3tty_A		675	Beta-GAL, beta-galactosidase; TIM barrel, glycosid	85.11
3n9k_A		399	Glucan 1,3-beta-glucosidase; aromatic entranceway/	84.94

>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A	Back alignment and structure

Probab=100.00  E-value=5.6e-158  Score=1343.22  Aligned_cols=496  Identities=28%  Similarity=0.560  Sum_probs=464.0

Q ss_pred             CCCCCeecCCCCCCCCchhhHhhCCCCceeccCCCCCCCCCCccccccccCCCChHHHHHHHHHHHHHHHHhCCCCcccc
Q 009062            1 MLLADFAVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYN   80 (545)
Q Consensus         1 ~~LGM~PVLPgF~G~VP~~~k~~~P~a~i~~~~~W~gf~~~~~~~~~~~LdP~DplF~~I~~~F~~~q~~~yG~~~h~Y~   80 (545)
                      |+|||+||||||+||||++||++||+|+|+++|.|+||++ +.+|+|++|+|+||||++||++||+||+++||+++|||+
T Consensus       397 relGM~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~gf~~-~~~~~~~~l~p~dplF~~i~~~F~~~q~~~yG~~~h~Y~  475 (914)
T 4a4a_A          397 QSFGINPVLQGYSGMVPRDFKEKNQEAQTISQGGWCGFDR-PDMLKTYVNEGEADYFQKVADVFYEKQKEVFGDVTNFYG  475 (914)
T ss_dssp             HHHTCEEEEECCSCEECTTHHHHSTTCCEECCCEETTEEC-CEEECSSCCTTSCCHHHHHHHHHHHHHHHHHCSCCSEEE
T ss_pred             HHcCCeecCCCcCCCCChHHHhhCCCCeeecCCCCCCCCC-chhcccccCCCCChHHHHHHHHHHHHHHHHhCCcccccc
Confidence            5899999999999999999999999999999999999985 667779999999999999999999999999997689999


Q ss_pred             CCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCceEEEecccCCCCCCCCchhHHHhhhCCCC-CCEEEEecCCCcccc
Q 009062           81 CDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPL-GKLVVLDLFAEVKPI  159 (545)
Q Consensus        81 ~D~FnE~~pp~~d~~~L~~~~~~i~~am~~adP~AvWvmQgW~F~~~~fW~~~~~~a~L~~Vp~-~~mliLDL~~E~~p~  159 (545)
                      +||||||+|+.+.  .|++++++||++|+++||+||||||||+|.      +.  +++|++||+ ||||||||+||..|+
T Consensus       476 ~D~FnE~~~~~~~--~l~~~~~~v~~am~~~dp~AvWv~QgW~~~------~~--~~~L~~vp~~~~mlvLDL~se~~p~  545 (914)
T 4a4a_A          476 VDPFHQGGNTGDL--DNGKIYEIIQNKMIEHDNDAVWVIQNWQGN------PS--NNKLEGLTKKDQAMVLDLFSEVSPD  545 (914)
T ss_dssp             CCTTTTSCCCTTC--CHHHHHHHHHHHHHHHCTTCEEEEEEBTTB------SC--HHHHTTCSCGGGEEEEETTTTTSCC
T ss_pred             cCccccCCCCCCc--CHHHHHHHHHHHHHHhCCCCEEEEcccCCC------Ch--HHHHhCCCCCCCEEEEEcccccccc
Confidence            9999999876553  389999999999999999999999999964      33  379999997 999999999999999


Q ss_pred             cccccCCCCCCceeeeccCCCCccccccchhhhhcChHHhhhCCCCceEEEEeCccccccChhHHHHHHhhcCCCCCCCH
Q 009062          160 WSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVGVGMSMEGIEQNPVVYDLMSEMAFQHEKVDV  239 (545)
Q Consensus       160 W~~~~~f~G~pwIWc~LhNFGG~~gl~G~l~~i~~~~~~a~~~~~~~m~GiG~tpEGie~NpvvYeL~~d~aW~~~~id~  239 (545)
                      |++++. +|||||||||||||||+||+|+++.|+++|.+|+.. +++|||||+|||||||||||||||+||+|++++||+
T Consensus       546 w~~~~~-~G~pwiwc~L~NFGGn~gl~G~~~~~~~~~~~a~~~-~~~m~G~G~tpEgie~NpvvYeL~~e~aW~~~~id~  623 (914)
T 4a4a_A          546 WNRLEE-RDLPWIWNMLHNFGGRMGMDAAPEKLATEIPKALAN-SEHMVGIGITPQAINTNPLAYELLFDMAWTRDQINF  623 (914)
T ss_dssp             CHHHHT-TTCCEEEEECCCSTTCCSSCCCHHHHHHHHHHHHHT-CSCEEEEEECCSCSCSCHHHHHHHHHGGGCSSCCCH
T ss_pred             cchhhh-CCCceEEeccccCCCCCCCcccHHHHhhhHHHHhhc-CCCceEEeechhhcccCHHHHHHHHhcccCCCCCCH
Confidence            999988 899999999999999999999999999999999875 679999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccCCCChHHHHHHHHHHhcccCCCCCCCC-CCCcceeccCCCCCCcccccccccccCCCCcccccccccc
Q 009062          240 KAWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATD-KNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSE  318 (545)
Q Consensus       240 ~~Wl~~Ya~rRYG~~~~~~~~AW~iL~~tvY~~~~~~~~-~~~~~i~~~P~l~p~~~~~~~~~~~~~~~~~~r~~~~~~~  318 (545)
                      ++||++|++||||+.++++++||+||++|||||+..... .+++++++||+|+..                        .
T Consensus       624 ~~W~~~ya~~RYG~~~~~~~~AW~~L~~tvY~~~~~~~~~~~~s~~~~rP~l~~~------------------------~  679 (914)
T 4a4a_A          624 RTWTEDYIERRYGKTNKEILEAWNIILDTAYKKRNDYYQGAAESIINARPGFGIK------------------------S  679 (914)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHTTTSCCCSCCCSSCCCGGGSCSCSSCC------------------------C
T ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHhhhcCCCCccccCCCcCeeeeCCCCCcc------------------------C
Confidence            999999999999999999999999999999999864333 356788888887632                        3


Q ss_pred             CCCCCCCCCcCCHHHHHHHHHHHHhccccCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 009062          319 TSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLE  398 (545)
Q Consensus       319 ~~~~~~~~~~Yd~~~l~~A~~lll~~~~~l~~s~~y~yDLvDvtRQvL~n~a~~~~~~~~~Ay~~~d~~~~~~~~~~fl~  398 (545)
                      .++|++++++|||++|++||++||+++++|+++++|||||||||||||+|+++.+|.++++||+++|.+.|++++++||+
T Consensus       680 ~~~w~~~~~~Yd~~~~~~A~~lll~~~~~l~~s~~y~yDLvDvtRQ~l~n~~~~~~~~~~~ay~~~d~~~~~~~~~~~l~  759 (914)
T 4a4a_A          680 ASTWGHSKIVYDKSEFEKAIEIFAKNYDEFKDSDAFLYDFADILKQLLANSAQEYYEVMCNAYNNGNGEKFKFVSGKFLE  759 (914)
T ss_dssp             SSTTCCCCCCSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccCcccccCCHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCCChHHHHHHHHhhCCCHH--HHHHHHHHhhhcccccCCCCCcCCCCCcccccccccchhhhhhHHH
Q 009062          399 LVEDMDGLLACHDGFLLGPWLESAKQLAQNEE--QEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPR  476 (545)
Q Consensus       399 li~dlD~LL~t~~~FlLg~Wi~~Ar~~g~~~~--ek~~yE~NAR~qIT~WG~~~~~~~~~L~DYA~K~WsGL~~dyY~pR  476 (545)
                      ||++||+||+||++|+||+||++||++|.+++  ||++||+|||+|||+|||+..+++|+|+|||||+|+|||+|||+||
T Consensus       760 ll~~~D~lL~t~~~flLg~Wl~~Ar~~a~~~~~~e~~~yE~NAR~qIT~WG~~~~~~~g~l~DYA~k~W~GL~~dyY~pR  839 (914)
T 4a4a_A          760 LIKLQERVLSTRPEFLIGNWIEDARTMLKDSDDWTKDLFEFNARALVTTWGSRNNADGGGLKDYSNRQWSGLTEDYYYAR  839 (914)
T ss_dssp             HHHHHHHHHTTCGGGBHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHTTTSSSHHHHTTTSCTTTTCCCCBTHHHHTHHHH
T ss_pred             HHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCHHHHHHHHHHhHheEeeccCCCCCCCCcccccccchhhhhHHHHHHHH
Confidence            99999999999999999999999999998865  8999999999999999997555668999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhcCC----CcCCCCCC-CcHHHHHHHHHHHHh
Q 009062          477 AAIYFKYMIESLESGDGFRLKDWRREWIKLTNDWQNGR----NVYPVESN-GDALITSQWLYNKYL  537 (545)
Q Consensus       477 W~~f~~~l~~~l~~~~~~~~~~~~~~~~~~E~~W~~~~----~~y~~~p~-gd~~~~a~~l~~ky~  537 (545)
                      |++||++|.++|++|++|+..+    |+++|++|++++    +.||++|. ||++++|++||+||.
T Consensus       840 W~~f~~~l~~~l~~~~~~~~~~----~~~~e~~W~~~~~~~~~~yp~~~~g~d~~~~a~~~~~ky~  901 (914)
T 4a4a_A          840 WEKWINGLQAELDGGAKAPNID----WFKMEYDWVNKKSDTDKLYPTEASNENLGELAKIAMESYS  901 (914)
T ss_dssp             HHHHHHHHHHHHTTCSCCCCCC----HHHHHHHHHTCCTTTSCCCCCSCCCCCHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhcCCCCChHH----HHHHHHHHhccccccCCcCCCCCCCCCHHHHHHHHHHHcc
Confidence            9999999999999999998764    569999999964    89999999 599999999999995

PyMOL of 4a4a

>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*	Back alignment and structure

>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*	Back alignment and structure

>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		545
d1kwga2		393	A4 beta-galactosidase {Thermus thermophilus [TaxId	80.51

>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: A4 beta-galactosidase
species: Thermus thermophilus [TaxId: 274]

Probab=80.51  E-value=2.1  Score=38.93  Aligned_cols=84  Identities=15%  Similarity=0.105  Sum_probs=65.0

Q ss_pred             CCCCeecCCCCCCCCchhhHhhCCCCceeccCCCCCCCCCCccccccccCCCChHHHHHHHHHHHHHHHHhCCCCccccC
Q 009062            2 LLADFAVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNC   81 (545)
Q Consensus         2 ~LGM~PVLPgF~G~VP~~~k~~~P~a~i~~~~~W~gf~~~~~~~~~~~LdP~DplF~~I~~~F~~~q~~~yG~~~h~Y~~   81 (545)
                      +.||+||+=-|....|..+.+.+|+.........  +   ..+....+.++.+|.+.+..+.|++...+.|+....+...
T Consensus        62 ~~Gi~~iv~l~~~~~P~w~~~~~~~~~~~~~~g~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (393)
T d1kwga2          62 AEGLKVVLGTPTATPPKWLVDRYPEILPVDREGR--R---RRFGGRRHYCFSSPVYREEARRIVTLLAERYGGLEAVAGF  136 (393)
T ss_dssp             TTTCEEEEECSTTSCCHHHHHHCGGGSCBCTTSC--B---CCSSSSCCCCTTCHHHHHHHHHHHHHHHHHHTTCTTEEEE
T ss_pred             HCCCEEEEEcCCCCCchhhhccCcccccccCCCc--c---cccccccccCCCCHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            5799999988888899999999987654443211  1   1233456788899999999999999999999865567788


Q ss_pred             CCCCCCCCC
Q 009062           82 DTFDENTPP   90 (545)
Q Consensus        82 D~FnE~~pp   90 (545)
                      +..||..-.
T Consensus       137 ~~~ne~~~~  145 (393)
T d1kwga2         137 QTDNEYGCH  145 (393)
T ss_dssp             ECSSSTTTT
T ss_pred             eeccccccc
Confidence            888987543

PyMOL of d1kwga2