BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009063
         (545 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
           Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
           To Pts1 Peptide (7- Skl)
          Length = 327

 Score = 31.2 bits (69), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 359 IKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQ---RLHRRVFLENINPESQSL 411
           +   LA+SH + H  N+ +A +R  L   PQ EQ     L   V ++++N +S+  
Sbjct: 91  VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF 146


>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
           Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
           To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
 pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
           Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
           To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
 pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
           Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
           To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
           (Gapdh) Pts1 Peptide
 pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
           Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
           To Pts1 Peptide (10-Skl)
          Length = 327

 Score = 31.2 bits (69), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 359 IKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQ---RLHRRVFLENINPESQSL 411
           +   LA+SH + H  N+ +A +R  L   PQ EQ     L   V ++++N +S+  
Sbjct: 91  VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF 146


>pdb|3TIX|B Chain B, Crystal Structure Of The Chp1-Tas3 Complex Core
 pdb|3TIX|D Chain D, Crystal Structure Of The Chp1-Tas3 Complex Core
          Length = 458

 Score = 31.2 bits (69), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 353 QKTHWRIKTYLA----ISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPES 408
           +K + + ++YL+    + H+D+HK+ +  A    +++K P  E + L    F E   P  
Sbjct: 164 KKPYHKSQSYLSYLLQLGHIDLHKIGAFQATQILIVSKQPSPEAEELE-DTFREAAIPTF 222

Query: 409 QSLNILVSCFVKTSRF 424
           + L I  S F+  + F
Sbjct: 223 RGLEIPESLFLSQNVF 238


>pdb|1HXI|A Chain A, An Unexpected Extended Conformation For The Third Tpr
           Motif Of The Peroxin Pex5 From Trypanosoma Brucei
          Length = 121

 Score = 30.8 bits (68), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 359 IKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQ 392
           +   LA+SH + H  N+ +A +R  L   PQ EQ
Sbjct: 87  VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120


>pdb|1EJ6|A Chain A, Reovirus Core
 pdb|2CSE|U Chain U, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
          Length = 1289

 Score = 30.8 bits (68), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 294 ATQPFVINEWIQTKIQGYEVSGTVEHVGW 322
           A QP VI  WIQ KI G     +V   G+
Sbjct: 524 ADQPLVIEPWIQGKISGVPPPSSVRQFGY 552


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.135    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,257,844
Number of Sequences: 62578
Number of extensions: 520784
Number of successful extensions: 1689
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1685
Number of HSP's gapped (non-prelim): 6
length of query: 545
length of database: 14,973,337
effective HSP length: 104
effective length of query: 441
effective length of database: 8,465,225
effective search space: 3733164225
effective search space used: 3733164225
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)