Query 009063
Match_columns 545
No_of_seqs 366 out of 2231
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 17:59:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vv5_A MSCS, small-conductance 100.0 9.1E-45 3.1E-49 369.6 32.2 243 199-460 36-279 (286)
2 3udc_A Small-conductance mecha 100.0 1.2E-42 4E-47 353.9 37.9 216 231-461 62-279 (285)
3 2e6z_A Transcription elongatio 82.9 1.4 4.9E-05 33.2 4.3 46 296-343 6-56 (59)
4 2do3_A Transcription elongatio 75.5 6.8 0.00023 30.6 6.1 43 295-338 15-59 (69)
5 1nz9_A Transcription antitermi 72.9 9.4 0.00032 28.3 6.3 26 296-322 3-30 (58)
6 3udc_A Small-conductance mecha 64.2 38 0.0013 33.3 10.5 58 233-291 60-118 (285)
7 3mlq_E Transcription-repair co 40.8 39 0.0013 26.2 4.8 44 297-344 2-53 (71)
8 3p8b_B Transcription antitermi 39.5 21 0.00073 31.6 3.6 27 296-323 90-118 (152)
9 2jvv_A Transcription antitermi 35.8 26 0.0009 31.9 3.7 27 295-322 125-153 (181)
10 4b6m_A Tubulin-specific chaper 32.5 41 0.0014 27.1 3.8 25 296-322 4-28 (84)
11 3h0l_B Aspartyl/glutamyl-tRNA( 30.1 3.8E+02 0.013 28.4 11.8 147 288-450 90-245 (478)
12 4hpv_A S-adenosylmethionine sy 27.7 2.2E+02 0.0074 29.5 9.1 79 361-445 164-251 (407)
13 3exz_A MAOC-like dehydratase; 26.8 93 0.0032 27.1 5.7 16 291-306 85-100 (154)
14 1txq_A Dynactin 1; protein com 26.7 56 0.0019 26.8 3.8 27 295-323 10-36 (93)
15 2k4k_A GSP13, general stress p 24.6 1.6E+02 0.0055 25.1 6.6 43 296-348 3-45 (130)
16 1iq6_A (R)-hydratase, (R)-spec 24.1 1.3E+02 0.0043 24.9 5.8 24 290-320 80-103 (134)
17 3ip4_B Aspartyl/glutamyl-tRNA( 24.0 5.5E+02 0.019 27.2 11.8 151 288-455 88-247 (483)
18 2coy_A Dynactin-1; microtubule 23.9 68 0.0023 27.3 3.8 26 296-323 32-57 (112)
19 1whl_A Cylindromatosis tumor s 23.8 75 0.0026 26.1 4.0 28 296-323 6-35 (95)
20 2xhc_A Transcription antitermi 22.2 1.3E+02 0.0046 30.5 6.5 46 296-342 297-348 (352)
21 3j21_U 50S ribosomal protein L 21.6 70 0.0024 27.6 3.5 25 297-322 45-71 (121)
22 2cp0_A Clipr-59 protein, clipr 21.0 61 0.0021 26.7 2.9 27 294-323 13-39 (95)
23 1vq8_Q 50S ribosomal protein L 21.0 1.1E+02 0.0038 25.2 4.5 34 296-330 32-76 (96)
24 1vq8_T 50S ribosomal protein L 20.6 68 0.0023 27.6 3.2 25 297-322 42-68 (120)
25 2cp3_A CLIP-115, KIAA0291; mic 20.4 81 0.0028 25.3 3.5 26 295-323 5-30 (84)
26 3cnr_A Type IV fimbriae assemb 20.2 26 0.00088 30.0 0.4 20 288-307 32-51 (117)
27 2k52_A Uncharacterized protein 20.0 1.7E+02 0.0057 22.5 5.3 40 298-347 3-42 (80)
No 1
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=100.00 E-value=9.1e-45 Score=369.60 Aligned_cols=243 Identities=18% Similarity=0.250 Sum_probs=220.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh
Q 009063 199 TVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLA 278 (545)
Q Consensus 199 ~i~~~~~~~~~li~~~~~~~~~~~~~~~~~~r~~~i~~l~~i~~~vv~vi~~i~~L~~lGv~~~~lla~~Gi~glalgfA 278 (545)
++++++|++.+++..+.+.+.++... +.+..+++.++++++++++++++++..+|++++++++++|++|+++|||
T Consensus 36 ~i~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~aig~a 110 (286)
T 2vv5_A 36 AIIIVGLIIARMISNAVNRLMISRKI-----DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLA 110 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCS-----CHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 45577788888887765544444331 2345688999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCccCCcEEEEeecCCCeEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeEEEcccCCceE
Q 009063 279 GREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWR 358 (545)
Q Consensus 279 aqd~l~N~~aGi~I~~~rpf~VGD~I~i~i~g~~~~G~VeeIgl~sTT~irt~d~~~v~IPNs~l~~~~I~N~sr~~~~r 358 (545)
+|++++|++||++|+++|||++||||++ +|.+|+|++|++++ |++|++||+.++|||+.+.++.|+|||+++.++
T Consensus 111 ~q~~l~n~~sGi~i~~~~pf~vGD~I~i----~g~~G~V~~I~l~~-T~i~t~dg~~v~IPNs~l~~~~i~N~s~~~~~r 185 (286)
T 2vv5_A 111 LQGSLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFSREPVRR 185 (286)
T ss_dssp HTHHHHHHHHHHHHHTTCSSCTTCEEES----SSCEEEEEEECSSE-EEEECTTSCEEEEEHHHHHTSCEEESSSSSEEE
T ss_pred HHHHHHHHHhhhHHHhcCCccCCCEEEE----CCEEEEEEEEEeEE-EEEEeCCCCEEEechHHHhhCceEECCCCCcEE
Confidence 9999999999999999999999999998 67999999999999 999999999999999999999999999998889
Q ss_pred EEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEEeeCCCCCeEEEEEEEEEecCChhhHHHHHHHHHHH
Q 009063 359 IKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLD 437 (545)
Q Consensus 359 i~~~l~V~y-td~~~i~~i~~~l~e~l~~~p~i~~~~~~p~v~v~~~~~~~~~l~i~V~~~v~~~~~~~~~~ir~~i~~~ 437 (545)
++++++++| +|+++++++ ++++++++|.+..++. |.+.+.+++ ++++++++++|+++. +++++|++++++
T Consensus 186 ~~~~v~v~y~~d~~~v~~~---l~~~~~~~~~vl~~p~-p~v~v~~~~--~~~i~~~v~~~~~~~---~~~~~~~~l~~~ 256 (286)
T 2vv5_A 186 NEFIIGVAYDSDIDQVKQI---LTNIIQSEDRILKDRE-MTVRLNELG--ASSINFVVRVWSNSG---DLQNVYWDVLER 256 (286)
T ss_dssp EEEEEEECTTSCHHHHHHH---HHHHHHHCTTBCTTSC-EEEEEEEEC--SSSEEEEEEEEEETT---THHHHHHHHHHH
T ss_pred EEEEEEEcCCCCHHHHHHH---HHHHHHhCcccccCCC-CEEEEEEec--CCeEEEEEEEEEccc---hHHHHHHHHHHH
Confidence 999999999 899999998 8999999999887764 799999998 789999999999974 578999999999
Q ss_pred HHHHHHHCCCccCCCceEEEEec
Q 009063 438 LLHVISHHRARMATPIRTVQKIY 460 (545)
Q Consensus 438 i~~~l~~~gI~ia~P~~~l~~~~ 460 (545)
+++.|+++||++|||+++++...
T Consensus 257 i~~~~~~~gI~ip~P~~~v~~~~ 279 (286)
T 2vv5_A 257 IKREFDAAGISFPYPQMDVNFKR 279 (286)
T ss_dssp HHHHHHHHTCCCCCCEEEEEEEC
T ss_pred HHHHHHHCCCcCCCCceEEEecc
Confidence 99999999999999999999876
No 2
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=100.00 E-value=1.2e-42 Score=353.89 Aligned_cols=216 Identities=17% Similarity=0.268 Sum_probs=192.5
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccCCcEEEEeecC
Q 009063 231 NMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQG 310 (545)
Q Consensus 231 ~~~i~~l~~i~~~vv~vi~~i~~L~~lGv~~~~lla~~Gi~glalgfAaqd~l~N~~aGi~I~~~rpf~VGD~I~i~i~g 310 (545)
.++.+++++++++++++++++++|..+|++.++++|++|++|+++|||+|++++|++||++|+++|||++||||++
T Consensus 62 ~tl~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~~l~n~~~Gi~i~~~~pf~vGD~I~i---- 137 (285)
T 3udc_A 62 DTLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTI---- 137 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCCTTCEEEE----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCEEEE----
Confidence 4667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeEEEcccCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHH-cCC
Q 009063 311 YEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVNSIVADMRKVLA-KNP 388 (545)
Q Consensus 311 ~~~~G~VeeIgl~sTT~irt~d~~~v~IPNs~l~~~~I~N~sr~~~~ri~~~l~V~y-td~~~i~~i~~~l~e~l~-~~p 388 (545)
+|.+|+|++|++++ |++|++||+.++|||+.+ +.++|||++. .+..++++++| +|.++++++++++.+.+. .++
T Consensus 138 ~~~~G~V~~I~l~~-T~i~t~d~~~v~iPN~~l--~~i~N~s~~~-~~~~~~v~v~~~~d~~~v~~~l~~i~~~~~~~~~ 213 (285)
T 3udc_A 138 NGISGTVEEIGLRV-TKIRGFSDGLHIIPNGEI--KMVTNLTKDS-MMAVVNIAFPIDEDVDKIIEGLQEICEEVKKSRD 213 (285)
T ss_dssp TTEEEEEEEECSSE-EEEEETTTEEEEEEGGGC--SCEEECSSSC-EEEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCS
T ss_pred CCEEEEEEEeeeeE-EEEecCCCCEEEeccccc--ccccccCCCC-ceEEEEEeeecCCCHHHHHHHHHHHHHHHHhccc
Confidence 78999999999999 999999999999999999 4699999865 45568999999 899999988655544433 344
Q ss_pred CccccccceEEEEEeeCCCCCeEEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccCCCceEEEEecC
Q 009063 389 QVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYS 461 (545)
Q Consensus 389 ~i~~~~~~p~v~v~~~~~~~~~l~i~V~~~v~~~~~~~~~~ir~~i~~~i~~~l~~~gI~ia~P~~~l~~~~~ 461 (545)
...+++ |.+.+.+++ ++++++++++|+++. +++++++++++++++.|+++||++|||+|++|+...
T Consensus 214 ~~~~~~--~~v~~~~~~--~s~i~~~v~~~~~~~---~~~~~~~~l~~~I~~~f~~~gI~ipfP~~~v~~~~~ 279 (285)
T 3udc_A 214 DLIEGP--TVLGITDMQ--DSKLVIMVYAKTQPM---QKWAVERDIRYRVKKMFDQKNISFPYPQMDVNFKRV 279 (285)
T ss_dssp SBSSCC--EEEEEEEEE--TTEEEEEEEEEESTT---CHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEEEC
T ss_pred ccccCc--ccccccccC--CCEEEEEEEEEECcc---hHHHHHHHHHHHHHHHHHHCCCcCcCCCEEEEeCcC
Confidence 433332 578899999 789999999999864 478899999999999999999999999999999874
No 3
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.87 E-value=1.4 Score=33.23 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=30.9
Q ss_pred CCccCCcEEEEeecC--CCeEEEEEEEcceeEEEEEe---CCCcEEEEeCccc
Q 009063 296 QPFVINEWIQTKIQG--YEVSGTVEHVGWWSPTIIRG---DDREAVHIPNHKF 343 (545)
Q Consensus 296 rpf~VGD~I~i~i~g--~~~~G~VeeIgl~sTT~irt---~d~~~v~IPNs~l 343 (545)
-.|.+||.|+| ++| .+..|.|+++.--. .++.- .-.+.+.+|++++
T Consensus 6 ~~f~~GD~V~V-~~Gpf~g~~G~V~evd~e~-v~V~v~~fg~~tpvel~~~qv 56 (59)
T 2e6z_A 6 SGFQPGDNVEV-CEGELINLQGKILSVDGNK-ITIMPKHEDLKDMLEFPAQEL 56 (59)
T ss_dssp SSCCTTSEEEE-CSSTTTTCEEEECCCBTTE-EEEEECCSSCCSCEEEETTTE
T ss_pred ccCCCCCEEEE-eecCCCCCEEEEEEEeCCE-EEEEEEecCCCceEEEcHHHE
Confidence 36999999999 554 36899999998643 44443 1234566666654
No 4
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=75.50 E-value=6.8 Score=30.60 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=29.0
Q ss_pred cCCccCCcEEEEeecC--CCeEEEEEEEcceeEEEEEeCCCcEEEE
Q 009063 295 TQPFVINEWIQTKIQG--YEVSGTVEHVGWWSPTIIRGDDREAVHI 338 (545)
Q Consensus 295 ~rpf~VGD~I~i~i~g--~~~~G~VeeIgl~sTT~irt~d~~~v~I 338 (545)
.|-|++||.|++ ++| .|..|.|.++.=-..|.+-+..++-+.|
T Consensus 15 rK~F~~GDHVkV-i~G~~~getGlVV~v~~d~v~v~SD~t~~Ei~V 59 (69)
T 2do3_A 15 RKYFKMGDHVKV-IAGRFEGDTGLIVRVEENFVILFSDLTMHELKV 59 (69)
T ss_dssp CSSCCTTCEEEE-SSSTTTTCEEEEEEECSSCEEEEESSSCSEEEE
T ss_pred eeeccCCCeEEE-eccEEcCceEEEEEEeCCEEEEEeCCCCCEEEE
Confidence 478999999999 676 3678999888643324444444444444
No 5
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=72.95 E-value=9.4 Score=28.26 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=21.3
Q ss_pred CCccCCcEEEEeecCC--CeEEEEEEEcc
Q 009063 296 QPFVINEWIQTKIQGY--EVSGTVEHVGW 322 (545)
Q Consensus 296 rpf~VGD~I~i~i~g~--~~~G~VeeIgl 322 (545)
-+|++||.|++ ++|- |.+|.|++++.
T Consensus 3 ~~~~~Gd~V~V-~~Gpf~g~~g~v~~v~~ 30 (58)
T 1nz9_A 3 VAFREGDQVRV-VSGPFADFTGTVTEINP 30 (58)
T ss_dssp CSCCTTCEEEE-CSGGGTTCEEEEEEEET
T ss_pred cccCCCCEEEE-eecCCCCcEEEEEEEcC
Confidence 37899999999 5542 68999999975
No 6
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=64.16 E-value=38 Score=33.26 Aligned_cols=58 Identities=9% Similarity=-0.087 Sum_probs=35.4
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 009063 233 GFNFAGKAVY-TAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVM 291 (545)
Q Consensus 233 ~i~~l~~i~~-~vv~vi~~i~~L~~lGv~~~~lla~~Gi~glalgfAaqd~l~N~~aGi~ 291 (545)
..+.+..+++ ++-+++.++.++..++.=-.. ++++-+++-++|+|..=.+++.++.++
T Consensus 60 ~~~tl~~~~~~~~~~~i~~~~~~~~l~~~g~~-~~~l~a~~g~~g~aig~a~q~~l~n~~ 118 (285)
T 3udc_A 60 KIDTLTSLTKNAVRYIIYFLAGASILKLFNID-MTSLLAVAGIGSLAIGFGAQNLVKDMI 118 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554 444555555566665532223 344555555678898888899998875
No 7
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=40.77 E-value=39 Score=26.21 Aligned_cols=44 Identities=9% Similarity=0.138 Sum_probs=18.1
Q ss_pred CccCCcEEEEeecCCCeEEEEEEEcc--------eeEEEEEeCCCcEEEEeCcccc
Q 009063 297 PFVINEWIQTKIQGYEVSGTVEHVGW--------WSPTIIRGDDREAVHIPNHKFT 344 (545)
Q Consensus 297 pf~VGD~I~i~i~g~~~~G~VeeIgl--------~sTT~irt~d~~~v~IPNs~l~ 344 (545)
||++||+|.- ...| -|+++.|.- -+ -.++-.++..++||-.++.
T Consensus 2 ~l~~GD~VVh--~~hG-iG~~~gi~~~~v~g~~~ey-~~l~y~~~~~l~VPv~~~~ 53 (71)
T 3mlq_E 2 PHMPGDYLIH--PEHG-VGQYLGLETREVLGVKRDY-LVLRYKGEGKLYLPVEQLP 53 (71)
T ss_dssp -----------------CEEEEEEEEEEETTEEEEE-EEEEETTTEEEEEESSSCC
T ss_pred cCCCCCEEEE--CCCe-eEEEeEEEEEEeCCeeEEE-EEEEECCCCEEEEEhhhhc
Confidence 7999999985 2222 255555433 23 3455567778888888774
No 8
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=39.47 E-value=21 Score=31.63 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=21.7
Q ss_pred CCccCCcEEEEeecC--CCeEEEEEEEcce
Q 009063 296 QPFVINEWIQTKIQG--YEVSGTVEHVGWW 323 (545)
Q Consensus 296 rpf~VGD~I~i~i~g--~~~~G~VeeIgl~ 323 (545)
..|++||+|++ ++| .|..|.|++++-.
T Consensus 90 ~~~~~Gd~VrI-~~Gpf~g~~g~V~~vd~~ 118 (152)
T 3p8b_B 90 SGLEPGDLVEV-IAGPFKGQKAKVVKIDES 118 (152)
T ss_dssp TTCCTTCEEEE-CSSTTTTCEEEEEEEETT
T ss_pred ccCCCCCEEEE-eeecCCCCEEEEEEEeCC
Confidence 46999999998 554 3789999999753
No 9
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=35.81 E-value=26 Score=31.94 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=21.9
Q ss_pred cCCccCCcEEEEeecC--CCeEEEEEEEcc
Q 009063 295 TQPFVINEWIQTKIQG--YEVSGTVEHVGW 322 (545)
Q Consensus 295 ~rpf~VGD~I~i~i~g--~~~~G~VeeIgl 322 (545)
.-+|.+||.|+| ++| .|.+|.|++++-
T Consensus 125 ~~~~~~Gd~V~V-~~GPf~g~~G~v~~v~~ 153 (181)
T 2jvv_A 125 KTLFEPGEMVRV-NDGPFADFNGVVEEVDY 153 (181)
T ss_dssp CCCCCTTEEEEE-CSSTTTTEEEEEEEEET
T ss_pred cccCCCCCEEEE-eccCCCCcEEEEEEEeC
Confidence 347999999999 565 379999999963
No 10
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=32.54 E-value=41 Score=27.13 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=19.3
Q ss_pred CCccCCcEEEEeecCCCeEEEEEEEcc
Q 009063 296 QPFVINEWIQTKIQGYEVSGTVEHVGW 322 (545)
Q Consensus 296 rpf~VGD~I~i~i~g~~~~G~VeeIgl 322 (545)
+.++|||+|++ .+++..|+|.-||-
T Consensus 4 ~~i~vG~Rv~v--~~~~~~G~VryvG~ 28 (84)
T 4b6m_A 4 ETIHVGDRCLC--RPGDRLGSVRFVGR 28 (84)
T ss_dssp -CCCTTCEEEE--TTTTEEEEEEEEEE
T ss_pred cCcccCCEEEE--cCCCeEEEEEEEec
Confidence 45899999997 44567899998884
No 11
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Probab=30.08 E-value=3.8e+02 Score=28.41 Aligned_cols=147 Identities=11% Similarity=0.158 Sum_probs=92.7
Q ss_pred HHHHHH-hcCCccCCcEEEEeecCCCeEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeEEEcccCCceEEEEEEEec
Q 009063 288 SSVMIH-ATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAIS 366 (545)
Q Consensus 288 aGi~I~-~~rpf~VGD~I~i~i~g~~~~G~VeeIgl~sTT~irt~d~~~v~IPNs~l~~~~I~N~sr~~~~ri~~~l~V~ 366 (545)
.|.+|. ++.|+-.|=+|++..++ |....|++.. ..++-+.|+.++-+ +.....+.|.+---+.+.-.=+
T Consensus 90 kgYQITQ~~~Pia~~G~l~i~~~~----g~~k~I~I~r-ihlEEDagK~~h~~-----~~slvD~NRaGvPLiEIVTePd 159 (478)
T 3h0l_B 90 KGYQISQYEKPLATNGWVELNLPN----GEKKKVRIRR-LHIEEDAGKNIHEG-----DKTLVDLNRAGTPLMEIVTEPD 159 (478)
T ss_dssp TSEEEEESSSCSEEEEEEEEECTT----SCEEEEEEEE-EEEEECCCEEEEET-----TEEEEECSSTTCEEEEEEECTT
T ss_pred cccchhccccCeecCCEEEEEecC----CceEEEeeEE-EEecccccccccCC-----CceEEecCCCCCceEEEecCCC
Confidence 344444 57799999999984332 3457899988 99999999999872 3467789998776666544445
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCcccccc--ceEE----EEEeeCCCCCeEEEEEEEEEecCChhhHHHHHHHHHHHHHH
Q 009063 367 HLDVHKVNSIVADMRKVLAKNPQVEQQRL--HRRV----FLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLH 440 (545)
Q Consensus 367 ytd~~~i~~i~~~l~e~l~~~p~i~~~~~--~p~v----~v~~~~~~~~~l~i~V~~~v~~~~~~~~~~ir~~i~~~i~~ 440 (545)
..+.+++.+.+++++.+++...-.+.+.. .-+| .+...|... +--++-+++-+ .+..++..+..++.+
T Consensus 160 ~~s~eeA~a~~~~L~~ilr~lgvsd~~meeGslR~DvNVSvr~~g~~~----~GtRvEiKNln--S~~~v~~AI~yEi~R 233 (478)
T 3h0l_B 160 IRTPEEARLFLEKLRNIMRYAGVSKADMEKGQLRCDINVSIRPKGSKE----FGTRVEIKNVN--SFRFVQKALEYEIER 233 (478)
T ss_dssp BCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTCCS----CCCCEEEECCC--SHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCcCccccccCceEeeeeEEeccCCCCC----CcceEEEeccc--cHHHHHHHHHHHHHH
Confidence 57899999999999999886653333221 1122 222222111 22345556543 466677777766666
Q ss_pred HHH--HCCCccC
Q 009063 441 VIS--HHRARMA 450 (545)
Q Consensus 441 ~l~--~~gI~ia 450 (545)
..+ +.|-++.
T Consensus 234 Q~~~le~Gg~V~ 245 (478)
T 3h0l_B 234 QINVVEEGGEVV 245 (478)
T ss_dssp HHHHHHTTCCCC
T ss_pred HHHHHHcCCCee
Confidence 432 3565544
No 12
>4hpv_A S-adenosylmethionine synthase; structural genomics, PSI-biology; 2.21A {Sulfolobus solfataricus P2}
Probab=27.69 E-value=2.2e+02 Score=29.50 Aligned_cols=79 Identities=15% Similarity=0.304 Sum_probs=56.7
Q ss_pred EEEEeccCCHHHHHHHHHHHHHHHHc------CCCccccccceEEEEEeeCCCCCeEEEEEEEEEecC---ChhhHHHHH
Q 009063 361 TYLAISHLDVHKVNSIVADMRKVLAK------NPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTS---RFEEYLCVK 431 (545)
Q Consensus 361 ~~l~V~ytd~~~i~~i~~~l~e~l~~------~p~i~~~~~~p~v~v~~~~~~~~~l~i~V~~~v~~~---~~~~~~~ir 431 (545)
..++|.|.|....++++-++++.|.+ +|.+=.| +-+..+-. +..+++.|-+-.-+. +-++|.+.+
T Consensus 164 TS~gVGyAPlS~~E~~Vl~~E~~Lns~~~k~~~P~~GeD-----IKVMG~R~-g~~i~LTvA~a~v~r~v~~~~~Y~~~K 237 (407)
T 4hpv_A 164 TSFGVGFAPLTKLEKLVYETERHLNSKQFKAKLPEVGED-----IKVMGLRR-GNEVDLTIAMATISELIEDVNHYINVK 237 (407)
T ss_dssp CCEEEEEESCCHHHHHHHHHHHHHHSHHHHHHCTTEEEE-----EEEEEEEE-TTEEEEEEEEEEEGGGCCSHHHHHHHH
T ss_pred cCceeccCCCCHHHHHHHHHHHHhcchhhhhhCcccCCc-----eEEEEEee-CCeEEEEEEhhhhhhhhCCHHHHHHHH
Confidence 57889998888888888888888865 4554433 23333321 456777777665543 668999999
Q ss_pred HHHHHHHHHHHHHC
Q 009063 432 EAILLDLLHVISHH 445 (545)
Q Consensus 432 ~~i~~~i~~~l~~~ 445 (545)
+++.+.+.+...+.
T Consensus 238 ~~v~~~v~~~a~~~ 251 (407)
T 4hpv_A 238 EQVRNQILDLASKI 251 (407)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988763
No 13
>3exz_A MAOC-like dehydratase; Q2RSA1_rhort, NESG, RRR103A, structur genomics, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum}
Probab=26.79 E-value=93 Score=27.10 Aligned_cols=16 Identities=6% Similarity=0.032 Sum_probs=13.5
Q ss_pred HHHhcCCccCCcEEEE
Q 009063 291 MIHATQPFVINEWIQT 306 (545)
Q Consensus 291 ~I~~~rpf~VGD~I~i 306 (545)
-+-|.+|..+||.+.+
T Consensus 85 ~~rF~~PV~~GD~L~~ 100 (154)
T 3exz_A 85 ELSWPNPTRPGDELHV 100 (154)
T ss_dssp EEECSSCCCTTCEEEE
T ss_pred EEEEcCCCCCCCEEEE
Confidence 3568899999999986
No 14
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=26.74 E-value=56 Score=26.76 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=20.6
Q ss_pred cCCccCCcEEEEeecCCCeEEEEEEEcce
Q 009063 295 TQPFVINEWIQTKIQGYEVSGTVEHVGWW 323 (545)
Q Consensus 295 ~rpf~VGD~I~i~i~g~~~~G~VeeIgl~ 323 (545)
.+.+++||+|++ .+.+..|+|.-||-.
T Consensus 10 ~~~~~vG~rv~v--~~~~~~GtVryvG~~ 36 (93)
T 1txq_A 10 ARPLRVGSRVEV--IGKGHRGTVAYVGAT 36 (93)
T ss_dssp -CCCCTTCEEEE--TTTCCEEEEEEEECC
T ss_pred cccCCCCCEEEE--CCCCeEEEEEEeeec
Confidence 357999999997 333578999988864
No 15
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=24.64 E-value=1.6e+02 Score=25.11 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=31.0
Q ss_pred CCccCCcEEEEeecCCCeEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeE
Q 009063 296 QPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVV 348 (545)
Q Consensus 296 rpf~VGD~I~i~i~g~~~~G~VeeIgl~sTT~irt~d~~~v~IPNs~l~~~~I 348 (545)
..+++||.+. |+|..|.=.- ..++..++..=.||.+.+....+
T Consensus 3 ~~~~vG~iv~---------G~V~~i~~~G-~FV~l~~~~~Glihisel~~~~~ 45 (130)
T 2k4k_A 3 AKFEVGSVYT---------GKVTGLQAYG-AFVALDEETQGLVHISEVTHGFV 45 (130)
T ss_dssp CCCCTTCEEE---------EEEEEEETTE-EEEEEETTEEEEEEGGGTSSSCC
T ss_pred CcCCCCCEEE---------EEEEEEeCCe-EEEEECCCcEEEEEHHHCCcccc
Confidence 4578888664 7888886665 66777777778888888865443
No 16
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase; polyhydroxyalkanoate, aeromonas caviae, the hydratase 2 motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Probab=24.12 E-value=1.3e+02 Score=24.93 Aligned_cols=24 Identities=8% Similarity=0.147 Sum_probs=17.8
Q ss_pred HHHHhcCCccCCcEEEEeecCCCeEEEEEEE
Q 009063 290 VMIHATQPFVINEWIQTKIQGYEVSGTVEHV 320 (545)
Q Consensus 290 i~I~~~rpf~VGD~I~i~i~g~~~~G~VeeI 320 (545)
.-+-|.+|..+||.+.+ +++|.++
T Consensus 80 ~~~rf~~Pv~~Gd~l~~-------~~~v~~~ 103 (134)
T 1iq6_A 80 QSLSFKLPVFVGDEVTA-------EVEVTAL 103 (134)
T ss_dssp EEEEECSCCBTTCEEEE-------EEEEEEE
T ss_pred EEEEEcCCCCCCCEEEE-------EEEEEEE
Confidence 34567899999999986 3566655
No 17
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Probab=24.05 E-value=5.5e+02 Score=27.16 Aligned_cols=151 Identities=12% Similarity=0.129 Sum_probs=94.6
Q ss_pred HHHHHH-hcCCccCCcEEEEeecCCCeEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeEEEcccCCceEEEEEEEec
Q 009063 288 SSVMIH-ATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAIS 366 (545)
Q Consensus 288 aGi~I~-~~rpf~VGD~I~i~i~g~~~~G~VeeIgl~sTT~irt~d~~~v~IPNs~l~~~~I~N~sr~~~~ri~~~l~V~ 366 (545)
.|.+|. ++.|+-.|=+|++..+| .-..|++.. ..++-+.|+.++-.+ .....+.|.+---+.+.-.=+
T Consensus 88 kgYQITQ~~~Pia~~G~l~i~~~~-----~~k~I~I~r-ihlEEDagK~~h~~~-----~slvD~NRaGvPLiEIVTePd 156 (483)
T 3ip4_B 88 KAYQISQFDQPIGENGYIDIEVDG-----ETKRIGITR-LHMEEDAGKSTHKGE-----YSLVDLNRQGTPLIEIVSEPD 156 (483)
T ss_dssp TSEEEECSSSCSEEEEEEEECSSS-----SCEEEEEEE-EEEEECCCEEEEETT-----EEEEECTTTTCEEEEEEECSC
T ss_pred cCccccccccCeecCCEEEEEecC-----ceEEEeEEE-EeecchhhhhccCCC-----ceEEecCCCCCceEEEecCCC
Confidence 344444 57789999999884332 236789988 999999999998643 467789998776666544445
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCcccccc--ceEE----EEEeeCCCCCeEEEEEEEEEecCChhhHHHHHHHHHHHHHH
Q 009063 367 HLDVHKVNSIVADMRKVLAKNPQVEQQRL--HRRV----FLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLH 440 (545)
Q Consensus 367 ytd~~~i~~i~~~l~e~l~~~p~i~~~~~--~p~v----~v~~~~~~~~~l~i~V~~~v~~~~~~~~~~ir~~i~~~i~~ 440 (545)
..+.+++.+.+++++.+++...-.+.+.. .-+| .+...+.. .+--++-+++-+ .+..++..+..++.+
T Consensus 157 ~~s~eeA~a~~~~L~~ilr~lgvsd~~meeGslR~DvNVSvr~~g~~----~~GtRvEiKNln--S~~~v~~AI~yEi~R 230 (483)
T 3ip4_B 157 IRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQE----KFGTKAELKNLN--SFNYVRKGLEYEEKR 230 (483)
T ss_dssp BCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTSC----CCCCEEEEECCC--SHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCCcccCceEeeeeEeecCCCCC----CCcceEEEeccc--CHHHHHHHHHHHHHH
Confidence 57999999999999999886653222211 1122 22322211 122355566553 466677777766666
Q ss_pred HHH--HCCCccCCCceE
Q 009063 441 VIS--HHRARMATPIRT 455 (545)
Q Consensus 441 ~l~--~~gI~ia~P~~~ 455 (545)
..+ +.|-++.-+|+.
T Consensus 231 Q~~~le~Gg~v~qETR~ 247 (483)
T 3ip4_B 231 QEEELLNGGEIGQETRR 247 (483)
T ss_dssp HHHHHHHTCCCCEEEEE
T ss_pred HHHHHHcCCcEecccee
Confidence 443 455566544443
No 18
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=23.90 E-value=68 Score=27.28 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=20.4
Q ss_pred CCccCCcEEEEeecCCCeEEEEEEEcce
Q 009063 296 QPFVINEWIQTKIQGYEVSGTVEHVGWW 323 (545)
Q Consensus 296 rpf~VGD~I~i~i~g~~~~G~VeeIgl~ 323 (545)
+.++|||+|++ .+++..|+|.-||-.
T Consensus 32 ~~l~VG~RV~V--~~~g~~GtVRyvG~v 57 (112)
T 2coy_A 32 RPLRVGSRVEV--IGKGHRGTVAYVGAT 57 (112)
T ss_dssp CCCCTTCEEEE--TTTCCEEEEEEEECC
T ss_pred ccCCCCCEEEE--CCCCeEEEEEEeeec
Confidence 57999999997 333578999988853
No 19
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=23.84 E-value=75 Score=26.06 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=20.9
Q ss_pred CCccCCcEEEEeecCC--CeEEEEEEEcce
Q 009063 296 QPFVINEWIQTKIQGY--EVSGTVEHVGWW 323 (545)
Q Consensus 296 rpf~VGD~I~i~i~g~--~~~G~VeeIgl~ 323 (545)
..++|||+|++..+++ +..|+|.-||-.
T Consensus 6 ~~~~VG~rV~V~~~~~~~~~~GtVryvG~v 35 (95)
T 1whl_A 6 SGIDVGCPVKVQLRSGEEKFPGVVRFRGPL 35 (95)
T ss_dssp CCCCSSCEEEEECSSSSCEEEEEEEEECCC
T ss_pred ccCcCCCEEEEecCCCccceeEEEEEeCcc
Confidence 4699999999832332 478999988864
No 20
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=22.24 E-value=1.3e+02 Score=30.49 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=29.3
Q ss_pred CCccCCcEEEEeecC--CCeEEEEEEEcc---eeEEEEEeCCCc-EEEEeCcc
Q 009063 296 QPFVINEWIQTKIQG--YEVSGTVEHVGW---WSPTIIRGDDRE-AVHIPNHK 342 (545)
Q Consensus 296 rpf~VGD~I~i~i~g--~~~~G~VeeIgl---~sTT~irt~d~~-~v~IPNs~ 342 (545)
-+|.+||.|++ ++| .|..|.|++++- +.++.+.-+.++ .+-+++++
T Consensus 297 ~~f~~Gd~VrV-~~GPF~G~~G~V~evd~ek~rv~V~V~ifGR~tpVeL~~~q 348 (352)
T 2xhc_A 297 LGFKVGDMVKI-ISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVSE 348 (352)
T ss_dssp CCCCTTCEEEE-CSSTTTTCEEEEEEEETTTTEEEEEEEETTEEEEEEEEGGG
T ss_pred ccCCCCCEEEE-eccCCCCcEEEEEEEcCCCCEEEEEEEECCCcEEEEEchHH
Confidence 47999999999 565 378999999965 332334444332 34444443
No 21
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.58 E-value=70 Score=27.55 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=19.6
Q ss_pred CccCCcEEEEeecC--CCeEEEEEEEcc
Q 009063 297 PFVINEWIQTKIQG--YEVSGTVEHVGW 322 (545)
Q Consensus 297 pf~VGD~I~i~i~g--~~~~G~VeeIgl 322 (545)
+++.||.|+| +.| -|..|.|.++.-
T Consensus 45 ~IkkGD~V~V-i~GkdKGk~GkV~~V~~ 71 (121)
T 3j21_U 45 PVRVGDKVRI-MRGDYKGHEGKVVEVDL 71 (121)
T ss_dssp ECCSSSEEEE-CSSSCSSEEEEEEEEET
T ss_pred ccccCCEEEE-eecCCCCcEeEEEEEEe
Confidence 7899999998 654 356899988853
No 22
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=21.05 E-value=61 Score=26.71 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=20.3
Q ss_pred hcCCccCCcEEEEeecCCCeEEEEEEEcce
Q 009063 294 ATQPFVINEWIQTKIQGYEVSGTVEHVGWW 323 (545)
Q Consensus 294 ~~rpf~VGD~I~i~i~g~~~~G~VeeIgl~ 323 (545)
....+++||+|++ + +...|+|.-||-.
T Consensus 13 ~~~~~~vG~RV~V--~-g~~~GtVryvG~v 39 (95)
T 2cp0_A 13 SALGLRLGDRVLL--D-GQKTGTLRFCGTT 39 (95)
T ss_dssp HHHTCCTTCEEEE--T-TTEEEEEEEEECC
T ss_pred cccCCCCCCEEEE--C-CCCeEEEEEeccc
Confidence 3456999999998 3 3458999888853
No 23
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=21.03 E-value=1.1e+02 Score=25.25 Aligned_cols=34 Identities=24% Similarity=0.071 Sum_probs=24.8
Q ss_pred CCccCCcEEEEeecCC-----------CeEEEEEEEcceeEEEEEe
Q 009063 296 QPFVINEWIQTKIQGY-----------EVSGTVEHVGWWSPTIIRG 330 (545)
Q Consensus 296 rpf~VGD~I~i~i~g~-----------~~~G~VeeIgl~sTT~irt 330 (545)
+-|++||.|.|++++. |-.|+|..++=+. ..+.-
T Consensus 32 ~~yk~Gd~VdIk~~~svqKGmPhk~yHGkTG~V~~v~~~A-vgV~V 76 (96)
T 1vq8_Q 32 EEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDA-YKVDI 76 (96)
T ss_dssp CCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTE-EEEEE
T ss_pred HHcCCCCEEEEEecCCccCCCCcccCCCCCeEEEeECCCE-EEEEE
Confidence 5699999999976542 3478998887776 54443
No 24
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=20.64 E-value=68 Score=27.63 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=20.0
Q ss_pred CccCCcEEEEeecCC--CeEEEEEEEcc
Q 009063 297 PFVINEWIQTKIQGY--EVSGTVEHVGW 322 (545)
Q Consensus 297 pf~VGD~I~i~i~g~--~~~G~VeeIgl 322 (545)
+++.||.|+| +.|. |..|.|.++.-
T Consensus 42 ~IkkGD~V~V-i~G~dKGk~GkV~~V~~ 68 (120)
T 1vq8_T 42 RVNAGDTVEV-LRGDFAGEEGEVINVDL 68 (120)
T ss_dssp ECCTTCEEEE-CSSTTTTCEEEEEEEET
T ss_pred cccCCCEEEE-EecCCCCCEEEEEEEEC
Confidence 7999999999 6552 67899988853
No 25
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=20.36 E-value=81 Score=25.31 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=19.8
Q ss_pred cCCccCCcEEEEeecCCCeEEEEEEEcce
Q 009063 295 TQPFVINEWIQTKIQGYEVSGTVEHVGWW 323 (545)
Q Consensus 295 ~rpf~VGD~I~i~i~g~~~~G~VeeIgl~ 323 (545)
++.+++||+|++ + +...|+|.-|+-.
T Consensus 5 ~~~~~vG~rv~v--~-g~~~GtVryvG~~ 30 (84)
T 2cp3_A 5 SSGLRLGDRVLV--G-GTKTGVVRYVGET 30 (84)
T ss_dssp SCSCCTTCEEEE--T-TTEEEEEEEEEEC
T ss_pred ccccccCCEEEE--C-CCCeEEEEEeccC
Confidence 356999999998 3 3458999888853
No 26
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=20.15 E-value=26 Score=30.05 Aligned_cols=20 Identities=0% Similarity=0.239 Sum_probs=17.3
Q ss_pred HHHHHHhcCCccCCcEEEEe
Q 009063 288 SSVMIHATQPFVINEWIQTK 307 (545)
Q Consensus 288 aGi~I~~~rpf~VGD~I~i~ 307 (545)
+|++|-.++|+++||.|.+.
T Consensus 32 GGlFI~T~~~~~~G~~V~l~ 51 (117)
T 3cnr_A 32 GGIFVPTPKRYMLGDEVFLL 51 (117)
T ss_dssp CEEEEECCSCCCTTCEEEEE
T ss_pred CeEEEeeCCccCCCCEEEEE
Confidence 56888899999999998874
No 27
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=20.03 E-value=1.7e+02 Score=22.50 Aligned_cols=40 Identities=8% Similarity=0.108 Sum_probs=28.8
Q ss_pred ccCCcEEEEeecCCCeEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCe
Q 009063 298 FVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNV 347 (545)
Q Consensus 298 f~VGD~I~i~i~g~~~~G~VeeIgl~sTT~irt~d~~~v~IPNs~l~~~~ 347 (545)
+++||.++ |+|.++.=.. ..+...++..=.+|.|.+....
T Consensus 3 ~~~G~iv~---------G~V~~v~~~G-~fV~l~~~~~Gllh~sel~~~~ 42 (80)
T 2k52_A 3 VEPGKFYK---------GVVTRIEKYG-AFINLNEQVRGLLRPRDMISLR 42 (80)
T ss_dssp CCTTCEEE---------EEEEEEETTE-EEEEEETTEEEEECGGGCSSCC
T ss_pred CCCCCEEE---------EEEEEEeCCE-EEEEECCCCEEEEEHHHCCccc
Confidence 56777654 7888887666 6677666777888888886543
Done!