BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009064
(545 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 415 bits (1067), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/487 (44%), Positives = 302/487 (62%), Gaps = 20/487 (4%)
Query: 53 LSIRHSLLSR-EVTATQLAETYLSRLKLAEPQLKSFIH-VSNNVLKEAQSIDDKIKRNEN 110
LS LL R EV+ ++ E++ R E ++K++I + LK+A+S+ E
Sbjct: 7 LSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESL------KER 60
Query: 111 VGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEF 170
PL G+ + VKDNI +T S++LEN+ P+DAT ++++K+ ++VGKTNLDEF
Sbjct: 61 ELPLFGIPIAVKDNILVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEF 120
Query: 171 GMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTGGSVRQPASFCG 230
MGS+TE S+F T NPWD+ RVP VSLGSDTGGS+RQPASFCG
Sbjct: 121 AMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCG 180
Query: 231 VVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQEVPD 290
V+G+KPTYGRVSRYGL+A+ASSLD IG FG D ++L ISG D D+TS+K VP+
Sbjct: 181 VIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVPE 240
Query: 291 FTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLP 350
++ ++ K +KGLK+G+ +E E + VK + LE+ G + EVSLP
Sbjct: 241 WSEEV-------KKEVKGLKIGLPKEFFEYELQPQVKEAFENFIKELEKEGFEIKEVSLP 293
Query: 351 SFSLGLPAYYILAXXXXXXXXXRYDGVRYGNQAAA-EDLNALYGDSRAKGFGSEVKMRIL 409
+P YYI+A RYDGVRYG +A +D+ +Y +R +GFG EVK RI+
Sbjct: 294 HVKYSIPTYYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIM 353
Query: 410 MGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEKKNDPLA 469
+GT+ALSAGYYDAYY +AQ+VR LI F A +E D++ SP P+ +K GE+ +P+
Sbjct: 354 LGTFALSAGYYDAYYLKAQKVRRLITNDFLKAFEEVDVIASPTTPTLPFKFGERLENPIE 413
Query: 470 MYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQTL 529
MY DI+TV NLAGLPA+ +P + + GLPVG Q+IG +DE LL++ +++EQ
Sbjct: 414 MYLSDILTVPANLAGLPAISIPIAWKD----GLPVGGQLIGKHWDETTLLQISYLWEQKF 469
Query: 530 QGCRFVP 536
+ +P
Sbjct: 470 KHYEKIP 476
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 399 bits (1026), Expect = e-111, Method: Compositional matrix adjust.
Identities = 207/484 (42%), Positives = 308/484 (63%), Gaps = 21/484 (4%)
Query: 53 LSIRH----SLLS----REVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDD 103
+SIR+ +LL+ +++ + + + ++ +P +KSF+ + N +K+AQ +D+
Sbjct: 1 MSIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDE 60
Query: 104 KIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVG 163
+++ G L G+ +G+KDNI T + +T S++LE + P +++T ++K+ + + +++G
Sbjct: 61 LQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIG 120
Query: 164 KTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTGGSVR 223
K N+DEF MG +TE+S F+ T NP+D VP +SLGSDTGGS+R
Sbjct: 121 KLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIR 180
Query: 224 QPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATS 283
QPA++CGVVG+KPTYGRVSR+GL+A+ASSLD IG +V D I+L AISG D D+TS
Sbjct: 181 QPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTS 240
Query: 284 SKQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCT 343
+ + DFTS++ K +KGLKV + +E L GV VK V AV L+ LG
Sbjct: 241 APVDDVDFTSEI-------GKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAV 293
Query: 344 LSEVSLPSFSLGLPAYYILAXXXXXXXXXRYDGVRYG-NQAAAEDLNALYGDSRAKGFGS 402
+ EVSLP+ G+P+YY++A R+DG+RYG + A L LY SR++GFG
Sbjct: 294 VEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGK 353
Query: 403 EVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGE 462
EVK RI +GT+ALS+GYYDAYYK++Q+VRTLI+ F + D+++ P AP+ A+ +GE
Sbjct: 354 EVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGE 413
Query: 463 KKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVG 522
+ +DPL MY+ D++T VNLAGLP + +PCG G PI GLQ IG FDE L +V
Sbjct: 414 EIDDPLTMYANDLLTTPVNLAGLPGISVPCGQSNGRPI----GLQFIGKPFDEKTLYRVA 469
Query: 523 HIFE 526
+ +E
Sbjct: 470 YQYE 473
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 380 bits (975), Expect = e-105, Method: Compositional matrix adjust.
Identities = 219/485 (45%), Positives = 293/485 (60%), Gaps = 22/485 (4%)
Query: 54 SIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGP 113
IR + EV+ ++A+ YL R++ +P L +F+ ++ +L+EA+++D + P
Sbjct: 5 EIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLNERLLEEAEAVDPGL-------P 57
Query: 114 LAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMG 173
LAG++V VKDNI T + +TAGSR+LEN+ PP++ATAV ++K +V+GKTNLDEFGMG
Sbjct: 58 LAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMG 117
Query: 174 STTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTGGSVRQPASFCGVVG 233
S+TE S+F T NP+D RVP ++LGSDTGGSVRQPA+FCGV G
Sbjct: 118 SSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYG 177
Query: 234 LKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQEVPDFTS 293
LKPTYGRVSR+GLIAYASSLD IG SV D +L+ A +G D LDATS P F
Sbjct: 178 LKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLP-PRFQE 236
Query: 294 QLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLPSFS 353
L PL L++GV+RE L G GV+ + A+ ELG ++ EVS PS
Sbjct: 237 AL-------EGPLPPLRLGVVREAL-AGNSPGVERALEEALKVFRELGLSVREVSWPSLP 288
Query: 354 LGLPAYYILAXXXXXXXXXRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRILMGTY 413
L AYYILA RYDG YG +AA E++ + +RA FG EVK R+L+GT+
Sbjct: 289 QALAAYYILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATRAL-FGLEVKRRVLVGTF 347
Query: 414 ALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEKKNDPLAMYSG 473
LS+GYY+AYY RAQ R ++ + E D+L+ P P A+ G ++ DPLAMY
Sbjct: 348 VLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFPFGARR-DPLAMYRE 406
Query: 474 DIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQTLQGCR 533
D+ TV NL GLPAL P GF EG LPVGLQ++ ++ +LL+ FE+
Sbjct: 407 DLYTVGANLTGLPALSFPAGF-EG---HLPVGLQLLAPWGEDERLLRAALAFEEATARAH 462
Query: 534 FVPPL 538
PL
Sbjct: 463 LKAPL 467
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 370 bits (951), Expect = e-103, Method: Compositional matrix adjust.
Identities = 203/476 (42%), Positives = 274/476 (57%), Gaps = 25/476 (5%)
Query: 53 LSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVG 112
L+I L E +L + L +K +P +K+FI V NV S++ K G
Sbjct: 9 LTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENV-----SVEKK-------G 56
Query: 113 PLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGM 172
G+ V +KDNI T+ M +T SR+LENY FDAT VKK+KE +VVGK NLDEF M
Sbjct: 57 KFWGIPVAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAM 116
Query: 173 GSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTGGSVRQPASFCGVV 232
GS+TE S+F T NPWD+ RVP V +LGSDTGGSVRQPAS CGVV
Sbjct: 117 GSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVV 176
Query: 233 GLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQEVPDFT 292
G KPTYG VSRYGL+A+ASSLD IG +V D IL+ ISG D DAT+ ++V DF
Sbjct: 177 GYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKV-DFL 235
Query: 293 SQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLPSF 352
S++ + + G+K V E E+ ++ GV A+ LE LG + V +P
Sbjct: 236 SEI-------EEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHI 288
Query: 353 SLGLPAYYILAXXXXXXXXXRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRILMGT 412
+ YY++A R+DGV+YG + + L +Y +R GFG EV+ RI++GT
Sbjct: 289 KYSVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGT 348
Query: 413 YALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEKKNDPLAMYS 472
+ LSA YY+AY+ +A +VR I L + D +++P +P A+KIGE K DPL Y
Sbjct: 349 FTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIK-DPLTYYL 407
Query: 473 GDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQT 528
DI T+ NLAGLPA+ +P GF LPVG+Q+IG F +GK+ ++ E+
Sbjct: 408 MDIFTIPANLAGLPAISVPFGFSN----NLPVGVQVIGRRFADGKVFRIARAIEKN 459
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 355 bits (911), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 201/476 (42%), Positives = 267/476 (56%), Gaps = 25/476 (5%)
Query: 53 LSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVG 112
L+I L E +L + L +K +P +K+FI V NV S++ K G
Sbjct: 10 LTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENV-----SVEKK-------G 57
Query: 113 PLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGM 172
G+ V +KDNI T+ +T SR+LENY FDAT VKK KE +VVGK NLDEF
Sbjct: 58 KFWGIPVAIKDNILTLGXRTTCASRILENYESVFDATVVKKXKEAGFVVVGKANLDEFAX 117
Query: 173 GSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTGGSVRQPASFCGVV 232
GS+TE S+F T NPWD+ RVP V +LGSDTGGSVRQPAS CGVV
Sbjct: 118 GSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGXVVAALGSDTGGSVRQPASLCGVV 177
Query: 233 GLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQEVPDFT 292
G KPTYG VSRYGL+A+ASSLD IG +V D IL ISG D DAT+ ++V DF
Sbjct: 178 GYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILXEIISGRDENDATTVNRKV-DFL 236
Query: 293 SQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLPSF 352
S++ + + G K V E E+ ++ GV A+ LE LG + V +P
Sbjct: 237 SEI-------EEGVSGXKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHI 289
Query: 353 SLGLPAYYILAXXXXXXXXXRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRILMGT 412
+ YY++A R+DGV+YG + + L Y +R GFG EV+ RI +GT
Sbjct: 290 KYSVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREXYXKTRNVGFGEEVRRRIXIGT 349
Query: 413 YALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEKKNDPLAMYS 472
+ LSA YY+AY+ +A +VR I L + D +++P +P A+KIGE K DPL Y
Sbjct: 350 FTLSAAYYEAYFNKAXKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIK-DPLTYYL 408
Query: 473 GDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQT 528
DI T+ NLAGLPA+ +P GF LPVG+Q+IG F +GK+ ++ E+
Sbjct: 409 XDIFTIPANLAGLPAISVPFGFSN----NLPVGVQVIGRRFADGKVFRIARAIEKN 460
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 169 bits (427), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 129/437 (29%), Positives = 199/437 (45%), Gaps = 27/437 (6%)
Query: 112 GPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFG 171
G L G V +KDN+ +P GSR +E + P DAT V ++ V GK ++
Sbjct: 86 GVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLC 145
Query: 172 MGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTGGSVRQPASFCGV 231
++ + + NPWD R ++G D GGS+R PA+FCGV
Sbjct: 146 FSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGV 205
Query: 232 VGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQ-EVPD 290
VG KPT+G V G ++D +G +V D ++LS I+G D D + E D
Sbjct: 206 VGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQADSVEAGD 265
Query: 291 FTSQLISAALLESKPLKGLKVGVIRETLENGVDS-GVKSTVLGAVSHLEELGCTLSEVSL 349
+ S L S + GL++G++RE + V V V A L E+GCT+ EV++
Sbjct: 266 YLSTLDSD-------VDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCTVEEVNI 318
Query: 350 PSFSLGLPAYYILAXXXXXXXXXRYDGVRYGNQAAA---EDLNALYGDSR---AKGFGSE 403
P + ++A DG YG A +L A + R A
Sbjct: 319 PWHLHAFHIWNVIATDGGAYQM--LDGNGYGMNAEGLYDPELMAHFASRRIQHADALSET 376
Query: 404 VKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEK 463
VK+ L G + ++ A Y +A+ + L + ++ TAL + D+L+ P P A ++ K
Sbjct: 377 VKLVALTGHHGITT-LGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPYVASELPAK 435
Query: 464 KNDPLAMYSGDI-MTVNV---NLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLL 519
D + + M N ++ G P+L +P G V GLPVG+ + G FD+ +L
Sbjct: 436 DVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVN----GLPVGMMITGRHFDDATVL 491
Query: 520 KVGHIFEQTLQGCRFVP 536
+VG FE+ L+G P
Sbjct: 492 RVGRAFEK-LRGAFPTP 507
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 168 bits (425), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 128/437 (29%), Positives = 199/437 (45%), Gaps = 27/437 (6%)
Query: 112 GPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFG 171
G L G V +KDN+ +P GSR +E + P DAT V ++ V GK ++
Sbjct: 86 GVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLC 145
Query: 172 MGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTGGSVRQPASFCGV 231
++ + + NPWD R ++G D GG++R PA+FCGV
Sbjct: 146 FSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGAIRIPAAFCGV 205
Query: 232 VGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQ-EVPD 290
VG KPT+G V G ++D +G +V D ++LS I+G D D + E D
Sbjct: 206 VGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQADSVEAGD 265
Query: 291 FTSQLISAALLESKPLKGLKVGVIRETLENGVDS-GVKSTVLGAVSHLEELGCTLSEVSL 349
+ S L S + GL++G++RE + V V V A L E+GCT+ EV++
Sbjct: 266 YLSTLDS-------DVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCTVEEVNI 318
Query: 350 PSFSLGLPAYYILAXXXXXXXXXRYDGVRYGNQAAA---EDLNALYGDSR---AKGFGSE 403
P + ++A DG YG A +L A + R A
Sbjct: 319 PWHLHAFHIWNVIATDGGAYQM--LDGNGYGMNAEGLYDPELMAHFASRRIQHADALSET 376
Query: 404 VKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEK 463
VK+ L G + ++ A Y +A+ + L + ++ TAL + D+L+ P P A ++ K
Sbjct: 377 VKLVALTGHHGITT-LGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPYVASELPAK 435
Query: 464 KNDPLAMYSGDI-MTVNV---NLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLL 519
D + + M N ++ G P+L +P G V GLPVG+ + G FD+ +L
Sbjct: 436 DVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVN----GLPVGMMITGRHFDDATVL 491
Query: 520 KVGHIFEQTLQGCRFVP 536
+VG FE+ L+G P
Sbjct: 492 RVGRAFEK-LRGAFPTP 507
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 150/505 (29%), Positives = 238/505 (47%), Gaps = 46/505 (9%)
Query: 52 ILSIRHSLLSREVTATQLAETYLSRLKLAE---PQLKSFIHVSNNVLKEAQSIDDKIKRN 108
+ ++ + + E+ +T L + YL R+ + P+L++ I ++ + LKEA D + +
Sbjct: 13 VADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDRERRDG 72
Query: 109 ENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLD 168
GPL G+ + +KDNI M ++AGS L+ +RP DA V+++++ +V+GKTNL
Sbjct: 73 RLRGPLHGIPLLLKDNINAAPMATSAGSLALQGFRPD-DAYLVRRLRDAGAVVLGKTNLS 131
Query: 169 EFGMGSTTESSSFQV-----TANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTGGSVR 223
E+ +S S T NP+ IS P V++G++T GS+
Sbjct: 132 EWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIV 191
Query: 224 QPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLD--- 280
PA+ GVVGLKPT G VSR G+I + S D G SVAD +L+AI+G D D
Sbjct: 192 CPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADPAT 251
Query: 281 ATSSKQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEEL 340
AT + V D+T++ L+ + L+G ++G+++ L G+ + A + L
Sbjct: 252 ATMPGRAVYDYTAR------LDPQGLRGKRIGLLQTPLLK--YRGMPPLIEQAATELRRA 303
Query: 341 GCTLSEVSLPSFSLGLPAYYILAXXXXXXXXXRYDGVRYGNQAAAEDL---NALYGDSRA 397
G + V LP+ A L RY + DL N +
Sbjct: 304 GAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQEL 363
Query: 398 KGFGSEVKMRILMGTYALSAGYYDAYYKRAQ-QVRTLI-QKSFKTALDEN--DILISPAA 453
FG E L+ +AG D Y RA+ R L + AL + D L++P
Sbjct: 364 GLFGQE-----LLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTT 418
Query: 454 PSAAYKIGEKKND-PLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAA 512
A+ I + +D P YS +AG P+L +P G ++ GLPVGL +G A
Sbjct: 419 -GVAWPIRSEGDDFPGESYSA------AAVAGYPSLTVPMGQID----GLPVGLLFMGTA 467
Query: 513 FDEGKLLKVGHIFEQTLQGCRFVPP 537
+ E KL+++ + +EQ + R PP
Sbjct: 468 WSEPKLIEMAYAYEQRTRARR--PP 490
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 138 bits (347), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 129/444 (29%), Positives = 194/444 (43%), Gaps = 67/444 (15%)
Query: 96 KEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPF--DATAVKK 153
KEA ++ ++++R + GPL G+ + VKD MP+ AG++ PP +A AV++
Sbjct: 47 KEALALTEELRRGQVRGPLHGLPLTVKDLFPVKGMPTRAGTKA---PLPPLPEEARAVRR 103
Query: 154 VKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVS 213
++E ++ KTN E +G T E+ N D SR + S
Sbjct: 104 LREAGALLFAKTNXHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLAS 163
Query: 214 LGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAI 273
LG+DTGGS+R PA F GVVG KP+YGRVS G + + S D G SV D L +
Sbjct: 164 LGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEIL 223
Query: 274 SGHDRLDATSSKQEVPDFTSQLISAALLESKPLKGLK---VGVIRETLENGVDSGVKSTV 330
+G ES PL+G++ GV + LE + V+
Sbjct: 224 AG--------------------------ESIPLEGVQNPVFGVPLDFLEGRLGVEVRKAF 257
Query: 331 LGAVSHLEELGCTLSEVSLPSFSLGLPAYYILAXXXXXXXXXRYDGVRYGNQAAAEDLNA 390
+ L L + EVSLP L Y RY+ R +A E
Sbjct: 258 TRLLEDLPALRAEVREVSLP-----LEGVY-----EVYTRLVRYEAARIHEKALKE---- 303
Query: 391 LYGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILIS 450
+GF +V+ +L G Y DA +R + +R + K+ + D L+
Sbjct: 304 -----HPEGFSPQVREALLAGLALTEKDYRDAVAER-EALRLELVKALRGV----DALLL 353
Query: 451 PAAPSAAYKIGEKKNDPLAMYSGD-----IMTVNVNLAGLPALVLPCGFVEGGPIGLPVG 505
P P A +G ++ + + G +T+ +L G+P L LP VE G PVG
Sbjct: 354 PVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAKVE----GXPVG 409
Query: 506 LQMIGAAFDEGKLLKVGHIFEQTL 529
LQ++GA ++GK+L +G E L
Sbjct: 410 LQVVGAYGEDGKVLALGGWLEARL 433
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 128/445 (28%), Positives = 186/445 (41%), Gaps = 53/445 (11%)
Query: 92 NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAV 151
VL EA+++D + PL GV VKDNI +P +A Y P DAT V
Sbjct: 76 EEVLAEARALDASPATGK---PLYGVPFAVKDNIDVAGLPCSAACPAF-TYEPDRDATVV 131
Query: 152 KKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCV 211
+++ IV+GKTNLD+F G S F +D +
Sbjct: 132 ARLRAAGAIVLGKTNLDQFATGLVGTRSPFGAPRCVFDQDYISGGSSSGSAVAVAAGLVA 191
Query: 212 VSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLS 271
SLG+DT GS R PA+F +VG+KPT G +S G++ SLD + F +SVA+ ++
Sbjct: 192 FSLGTDTAGSGRVPAAFNNLVGVKPTKGLLSTSGVVPACRSLDCVTVFAASVAEGTLIRR 251
Query: 272 AISGHDRLDATSSKQEVPDFTSQLISAALLESKPLKGLKVGVIRE-TLENGVDSGVKSTV 330
G+D D S P +L P GL+VGV R+ E ++ +
Sbjct: 252 IAEGYDAADPYSR----PSQKRRL---------PHVGLRVGVPRQDQREFYGNTAYAALY 298
Query: 331 LGAVSHLEELGCTLSEVSLPSFSLGLPAYYILAXXXXXXXXXRYDGVR--YGNQAAAEDL 388
A+ + L L E+ F D + YG AE L
Sbjct: 299 QRALDEMISLDAELVEIDFAPFR---------------------DAAKLLYGGPWVAERL 337
Query: 389 NALYGD--SRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDEND 446
A+ GD SRA V I+ LSA DA+ R Q + + D
Sbjct: 338 EAV-GDHLSRAPDSFDPVVRSIVETAKTLSA--VDAF--RGQYELAALTQQANAQWARMD 392
Query: 447 ILISPAAPSAAYKIGEKKNDPLAMYSGDIMTVN-VNLAGLPALVLPCGFVEGGPIGLPVG 505
IL+ P AP+ +K+ DP+ + S N VNL A+ +P GF+E GLP G
Sbjct: 393 ILLLPTAPT-IHKVEAVMADPVRLNSQLGHYTNFVNLLDCAAIAVPAGFIE---TGLPFG 448
Query: 506 LQMIGAAFDEGKLLKVGHIFEQTLQ 530
+ ++G AF + + + + L+
Sbjct: 449 VTLVGPAFSDDSMALIADRLHRRLE 473
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 110/248 (44%), Gaps = 27/248 (10%)
Query: 103 DKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVV 162
DK R + GPL G+ VG+KD I T +MP+ GS + ++P DA V +K ++
Sbjct: 43 DKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATII 102
Query: 163 GKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTGGSV 222
GKT F T T NP + P ++LG+ TGGSV
Sbjct: 103 GKTTTTAFASRDPT------ATLNPHNTGHSPGGSSAGSAAAVGAGMIPLALGTQTGGSV 156
Query: 223 RQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDAT 282
+PA++CG +KP++ + G+ Y+ +LD +G FG+ D L A++G
Sbjct: 157 IRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRS----- 211
Query: 283 SSKQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGC 342
+F+ + P K ++GV+R+ V+ + + A+ E G
Sbjct: 212 -------EFSGIV---------PAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGA 255
Query: 343 TLSEVSLP 350
++ + LP
Sbjct: 256 SVQAIDLP 263
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 110/248 (44%), Gaps = 27/248 (10%)
Query: 103 DKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVV 162
DK R + GPL G+ VG+KD I T +MP+ GS + ++P DA V +K ++
Sbjct: 43 DKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATII 102
Query: 163 GKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTGGSV 222
GKT F T T NP + P ++LG+ TGGSV
Sbjct: 103 GKTTTTAFASRDPT------ATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSV 156
Query: 223 RQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDAT 282
+PA++CG +KP++ + G+ Y+ +LD +G FG+ D L A++G
Sbjct: 157 IRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRS----- 211
Query: 283 SSKQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGC 342
+F+ + P K ++GV+R+ V+ + + A+ E G
Sbjct: 212 -------EFSGIV---------PAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGA 255
Query: 343 TLSEVSLP 350
++ + LP
Sbjct: 256 SVQAIDLP 263
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 110/248 (44%), Gaps = 27/248 (10%)
Query: 103 DKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVV 162
DK R + GPL G+ VG+KD I T +MP+ GS + ++P DA V +K ++
Sbjct: 43 DKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATII 102
Query: 163 GKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTGGSV 222
GKT F T T NP + P ++LG+ TGGSV
Sbjct: 103 GKTTTTAFASRDPT------ATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSV 156
Query: 223 RQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDAT 282
QPA++CG +KP++ + G+ Y+ +LD +G FG+ D L A++G
Sbjct: 157 IQPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRS----- 211
Query: 283 SSKQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGC 342
+F+ + P K ++GV+R+ V+ + + A+ E G
Sbjct: 212 -------EFSGIV---------PAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGA 255
Query: 343 TLSEVSLP 350
++ + LP
Sbjct: 256 SVQAIDLP 263
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 110/248 (44%), Gaps = 27/248 (10%)
Query: 103 DKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVV 162
DK R + GPL G+ VG+KD I T +MP+ GS + ++P DA V +K ++
Sbjct: 43 DKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATII 102
Query: 163 GKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTGGSV 222
GKT F T T NP + P ++LG+ TGGSV
Sbjct: 103 GKTTTTAFASRDPT------ATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGAQTGGSV 156
Query: 223 RQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDAT 282
+PA++CG +KP++ + G+ Y+ +LD +G FG+ D L A++G
Sbjct: 157 IRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRS----- 211
Query: 283 SSKQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGC 342
+F+ + P K ++GV+R+ V+ + + A+ E G
Sbjct: 212 -------EFSGIV---------PAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGA 255
Query: 343 TLSEVSLP 350
++ + LP
Sbjct: 256 SVQAIDLP 263
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 110/248 (44%), Gaps = 27/248 (10%)
Query: 103 DKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVV 162
DK R + GPL G+ VG+KD I T +MP+ GS + ++P DA V +K ++
Sbjct: 43 DKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATII 102
Query: 163 GKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTGGSV 222
GKT F T T NP + P ++LG+ TGGSV
Sbjct: 103 GKTTTTAFASRDPT------ATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSV 156
Query: 223 RQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDAT 282
+PA++CG +KP++ + G+ Y+ +LD +G FG+ D L A++G
Sbjct: 157 IRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRS----- 211
Query: 283 SSKQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGC 342
+F+ + P K ++GV+R+ V+ + + A+ E G
Sbjct: 212 -------EFSGIV---------PAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGA 255
Query: 343 TLSEVSLP 350
++ + LP
Sbjct: 256 SVQAIDLP 263
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 110/248 (44%), Gaps = 27/248 (10%)
Query: 103 DKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVV 162
DK R + GPL G+ VG+KD I T +MP+ GS + ++P DA V +K ++
Sbjct: 43 DKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATII 102
Query: 163 GKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTGGSV 222
GKT F T T NP + P ++LG+ TGGSV
Sbjct: 103 GKTTTTAFASRDPT------ATLNPHNTGHSPGASSSGSAAAVGAGMIPLALGTQTGGSV 156
Query: 223 RQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDAT 282
+PA++CG +KP++ + G+ Y+ +LD +G FG+ D L A++G
Sbjct: 157 IRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRS----- 211
Query: 283 SSKQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGC 342
+F+ + P K ++GV+R+ V+ + + A+ E G
Sbjct: 212 -------EFSGIV---------PAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGA 255
Query: 343 TLSEVSLP 350
++ + LP
Sbjct: 256 SVQAIDLP 263
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 27/248 (10%)
Query: 103 DKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVV 162
DK R + GPL G+ VG+KD I T +MP+ GS + ++P DA V +K ++
Sbjct: 43 DKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATII 102
Query: 163 GKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTGGSV 222
GKT F T T NP + P ++LG+ TGG V
Sbjct: 103 GKTTTTAFASRDPT------ATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGXV 156
Query: 223 RQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDAT 282
+PA++CG +KP++ + G+ Y+ +LD +G FG+ D L A++G
Sbjct: 157 IRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRS----- 211
Query: 283 SSKQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGC 342
+F+ + P K ++GV+R+ V+ + + A+ E G
Sbjct: 212 -------EFSGIV---------PAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGA 255
Query: 343 TLSEVSLP 350
++ + LP
Sbjct: 256 SVQAIDLP 263
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9N|B Chain B, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 27/248 (10%)
Query: 103 DKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVV 162
DK R + GPL G+ VG+ D I T +MP+ GS + ++P DA V +K ++
Sbjct: 43 DKSARAQASGPLRGIAVGIADIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATII 102
Query: 163 GKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTGGSV 222
GKT F T T NP + P ++LG+ TGGSV
Sbjct: 103 GKTTTTAFASRDPT------ATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSV 156
Query: 223 RQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDAT 282
+PA++CG +KP++ + G+ Y+ +LD +G FG+ D L A++G
Sbjct: 157 IRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRS----- 211
Query: 283 SSKQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGC 342
+F+ + P K ++GV+R+ V+ + + A+ E G
Sbjct: 212 -------EFSGIV---------PAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGA 255
Query: 343 TLSEVSLP 350
++ + LP
Sbjct: 256 SVQAIDLP 263
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 111/224 (49%), Gaps = 18/224 (8%)
Query: 61 SREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENV--GPLAGVL 118
S E++ T+L E ++ ++ P++ + I + +K +R + GP AGV
Sbjct: 19 SGEISRTELLEATIAHVQAVNPEINAVII----------PLFEKARRESELASGPFAGVP 68
Query: 119 VGVKD--NICTVDMPSTAGSRVLEN-YRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGST 175
+KD + D+ +++ + E+ YR DA V++++ +++GKTN E G T
Sbjct: 69 YLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVT 128
Query: 176 TESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTGGSVRQPASFCGVVGLK 235
TE ++ T NPW++ R V+ G+D GSVR PAS CGVVGLK
Sbjct: 129 TEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGSVRIPASVCGVVGLK 188
Query: 236 PTYGRVSRYGLIAYASSLDVI---GCFGSSVADTGILLSAISGH 276
PT GR+S L+ + ++ G F SV D LL +SGH
Sbjct: 189 PTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGH 232
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 58/142 (40%), Gaps = 33/142 (23%)
Query: 425 KRAQQVRTLIQKSFKTALDE---------------NDILISPAAPSAAYKIGE----KKN 465
KRA QV ++F +DE D+LI P +IGE K
Sbjct: 349 KRADQV---TGRAFAACVDELRYYAGKVERWWEAGWDLLILPTVTRQTPEIGELMLAKGT 405
Query: 466 D----PLAMYSGDI----MTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGK 517
D A SG + TV N++G PA+ LP G G +P+G+Q++ A E
Sbjct: 406 DLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDG---MPIGVQIVAAYGREDL 462
Query: 518 LLKVGHIFEQTLQGCRFVPPLI 539
LL+V E L P L+
Sbjct: 463 LLQVAAQLEGALPWVARRPQLL 484
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 18/224 (8%)
Query: 61 SREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENV--GPLAGVL 118
S E++ T+L E ++ ++ P++ + I + +K +R + GP AGV
Sbjct: 19 SGEISRTELLEATIAHVQAVNPEINAVII----------PLFEKARRESELASGPFAGVP 68
Query: 119 VGVKD--NICTVDMPSTAGSRVLEN-YRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGST 175
+KD + D+ +++ + E+ YR DA V++++ +++GKTN E G T
Sbjct: 69 YLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVT 128
Query: 176 TESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTGGSVRQPASFCGVVGLK 235
TE ++ T NPW++ R V+ G+D G+VR PAS CGVVGLK
Sbjct: 129 TEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLK 188
Query: 236 PTYGRVSRYGLIAYASSLDVI---GCFGSSVADTGILLSAISGH 276
PT GR+S L+ + ++ G F SV D LL +SGH
Sbjct: 189 PTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGH 232
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 58/142 (40%), Gaps = 33/142 (23%)
Query: 425 KRAQQVRTLIQKSFKTALDE---------------NDILISPAAPSAAYKIGE----KKN 465
KRA QV ++F +DE D+LI P +IGE K
Sbjct: 349 KRADQV---TGRAFAACVDELRYYAGKVERWWEAGWDLLILPTVTRQTPEIGELMLAKGT 405
Query: 466 D----PLAMYSGDI----MTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGK 517
D A SG + TV N++G PA+ LP G G +P+G+Q++ A E
Sbjct: 406 DLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDG---MPIGVQIVAAYGREDL 462
Query: 518 LLKVGHIFEQTLQGCRFVPPLI 539
LL+V E L P L+
Sbjct: 463 LLQVAAQLEGALPWVARRPQLL 484
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 68/156 (43%)
Query: 91 SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATA 150
+N V + ++ + G L GV V +K+ ST G + E D
Sbjct: 101 TNCVTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVV 160
Query: 151 VKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQC 210
V+ +K + TN+ + + + F T NPW S+ P
Sbjct: 161 VQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGS 220
Query: 211 VVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGL 246
+ LG+D GGS+R P++FCG+ GLKPT R+S+ GL
Sbjct: 221 PLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGL 256
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 68/156 (43%)
Query: 91 SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATA 150
+N V + ++ + G L GV V +K+ ST G + E D
Sbjct: 75 TNCVTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVV 134
Query: 151 VKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQC 210
V+ +K + TN+ + + + F T NPW S+ P
Sbjct: 135 VQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGS 194
Query: 211 VVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGL 246
+ LG+D GGS+R P++FCG+ GLKPT R+S+ GL
Sbjct: 195 PLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGL 230
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 68/156 (43%)
Query: 91 SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATA 150
+N V + ++ + G L GV V +K+ ST G + E D
Sbjct: 82 TNCVTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVV 141
Query: 151 VKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQC 210
V+ +K + TN+ + + + F T NPW S+ P
Sbjct: 142 VQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGS 201
Query: 211 VVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGL 246
+ LG+D GGS+R P++FCG+ GLKPT R+S+ GL
Sbjct: 202 PLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGL 237
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QK5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ8|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ8|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ9|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ9|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QKV|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
pdb|3QKV|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
Length = 587
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 68/156 (43%)
Query: 91 SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATA 150
+N V + ++ + G L GV V +K+ ST G + E D
Sbjct: 119 TNCVTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVV 178
Query: 151 VKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQC 210
V+ +K + TN+ + + + F T NPW S+ P
Sbjct: 179 VQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGS 238
Query: 211 VVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGL 246
+ LG+D GGS+R P++FCG+ GLKPT R+S+ GL
Sbjct: 239 PLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGL 274
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 67/156 (42%)
Query: 91 SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATA 150
+N V + ++ + G L GV V +K+ ST G + E D
Sbjct: 81 TNCVTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVV 140
Query: 151 VKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQC 210
V+ +K + TN+ + + F T NPW S+ P
Sbjct: 141 VQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGS 200
Query: 211 VVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGL 246
+ LG+D GGS+R P++FCG+ GLKPT R+S+ GL
Sbjct: 201 PLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGL 236
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ1|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|3K7F|A Chain A, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K7F|B Chain B, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K83|A Chain A, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K83|B Chain B, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|A Chain A, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|B Chain B, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3LJ6|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ6|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ7|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3LJ7|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3OJ8|A Chain A, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3OJ8|B Chain B, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3PPM|A Chain A, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PPM|B Chain B, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|A Chain A, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|B Chain B, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
Length = 573
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 67/156 (42%)
Query: 91 SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATA 150
+N V + ++ + G L GV V +K+ ST G + E D
Sbjct: 105 TNCVTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVV 164
Query: 151 VKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQC 210
V+ +K + TN+ + + F T NPW S+ P
Sbjct: 165 VQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGS 224
Query: 211 VVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGL 246
+ LG+D GGS+R P++FCG+ GLKPT R+S+ GL
Sbjct: 225 PLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGL 260
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
pdb|2VYA|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
Length = 587
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 67/156 (42%)
Query: 91 SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATA 150
+N V + ++ + G L GV V +K+ ST G + E D
Sbjct: 119 TNCVTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVV 178
Query: 151 VKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQC 210
V+ +K + TN+ + + F T NPW S+ P
Sbjct: 179 VQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGS 238
Query: 211 VVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGL 246
+ LG+D GGS+R P++FCG+ GLKPT R+S+ GL
Sbjct: 239 PLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGL 274
>pdb|3T49|A Chain A, Crystal Structure Of Truncated Form Of Staphylococcal
Complement Inhibitor B (Scin-B) At 1.5 Angstrom
pdb|3T49|B Chain B, Crystal Structure Of Truncated Form Of Staphylococcal
Complement Inhibitor B (Scin-B) At 1.5 Angstrom
pdb|3T49|C Chain C, Crystal Structure Of Truncated Form Of Staphylococcal
Complement Inhibitor B (Scin-B) At 1.5 Angstrom
pdb|3T49|D Chain D, Crystal Structure Of Truncated Form Of Staphylococcal
Complement Inhibitor B (Scin-B) At 1.5 Angstrom
pdb|3T4A|G Chain G, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
pdb|3T4A|H Chain H, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
Length = 73
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 401 GSEVKMRILMG---TYALSAGYYDAYYKRAQQVRTLIQKSF--KTALDENDILISPAAPS 455
GS ++R L+ YAL+AG + YYK RT++ + K AL +ND + A
Sbjct: 4 GSAEELRTLLNKSNVYALAAGSLNPYYK-----RTIMMNEYRAKAALKKNDFVSMADAKV 58
Query: 456 AAYKI 460
A KI
Sbjct: 59 ALEKI 63
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 759
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 291 FTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLE 338
F + +IS +++SK + G+ + + RE VD + ++LG +S L+
Sbjct: 178 FRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQ 225
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 742
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 291 FTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLE 338
F + +IS +++SK + G+ + + RE VD + ++LG +S L+
Sbjct: 161 FRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQ 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,624,307
Number of Sequences: 62578
Number of extensions: 566209
Number of successful extensions: 1292
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1168
Number of HSP's gapped (non-prelim): 52
length of query: 545
length of database: 14,973,337
effective HSP length: 104
effective length of query: 441
effective length of database: 8,465,225
effective search space: 3733164225
effective search space used: 3733164225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)