RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 009064
(545 letters)
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Length = 485
Score = 746 bits (1929), Expect = 0.0
Identities = 222/489 (45%), Positives = 326/489 (66%), Gaps = 13/489 (2%)
Query: 52 ILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSN-NVLKEAQSIDDKIKRNEN 110
+ ++ + +++ + + + ++ +P +KSF+ + N +K+AQ +D+ +++
Sbjct: 8 VENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQM 67
Query: 111 VGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEF 170
G L G+ +G+KDNI T + +T S++LE + P +++T ++K+ + + +++GK N+DEF
Sbjct: 68 DGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEF 127
Query: 171 GMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCG 230
MG +TE+S F+ T NP+D VPGGSSGGSAAAV+A +SLGSDTGGS+RQPA++CG
Sbjct: 128 AMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCG 187
Query: 231 VVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQEVPD 290
VVG+KPTYGRVSR+GL+A+ASSLD IG +V D I+L AISG D D+TS+ + D
Sbjct: 188 VVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVD 247
Query: 291 FTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLP 350
FTS++ K +KGLKV + +E L GV VK V AV L+ LG + EVSLP
Sbjct: 248 FTSEI-------GKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLP 300
Query: 351 SFSLGLPAYYILASSESSSNLSRYDGVRYGNQAA-AEDLNALYGDSRAKGFGSEVKMRIL 409
+ G+P+YY++ASSE+SSNLSR+DG+RYG + A L LY SR++GFG EVK RI
Sbjct: 301 NTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIF 360
Query: 410 MGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEKKNDPLA 469
+GT+ALS+GYYDAYYK++Q+VRTLI+ F + D+++ P AP+ A+ +GE+ +DPL
Sbjct: 361 LGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLT 420
Query: 470 MYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQTL 529
MY+ D++T VNLAGLP + +PCG G P+GLQ IG FDE L +V + +E
Sbjct: 421 MYANDLLTTPVNLAGLPGISVPCGQSN----GRPIGLQFIGKPFDEKTLYRVAYQYETQY 476
Query: 530 QGCRFVPPL 538
L
Sbjct: 477 NLHDVYEKL 485
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 732 bits (1893), Expect = 0.0
Identities = 226/480 (47%), Positives = 318/480 (66%), Gaps = 19/480 (3%)
Query: 52 ILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSN-NVLKEAQSIDDKIKRNEN 110
+ +R L EV+ ++ E++ R E ++K++I LK+A+S+ ++
Sbjct: 7 LSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKERE----- 61
Query: 111 VGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEF 170
PL G+ + VKDNI +T S++LEN+ P+DAT ++++K+ ++VGKTNLDEF
Sbjct: 62 -LPLFGIPIAVKDNILVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEF 120
Query: 171 GMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCG 230
MGS+TE S+F T NPWD+ RVPGGSSGGSAA+V+ VSLGSDTGGS+RQPASFCG
Sbjct: 121 AMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCG 180
Query: 231 VVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQEVPD 290
V+G+KPTYGRVSRYGL+A+ASSLD IG FG D ++L ISG D D+TS+K VP+
Sbjct: 181 VIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVPE 240
Query: 291 FTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLP 350
++ ++ K +KGLK+G+ +E E + VK + LE+ G + EVSLP
Sbjct: 241 WSEEV-------KKEVKGLKIGLPKEFFEYELQPQVKEAFENFIKELEKEGFEIKEVSLP 293
Query: 351 SFSLGLPAYYILASSESSSNLSRYDGVRYGNQAA-AEDLNALYGDSRAKGFGSEVKMRIL 409
+P YYI+A SE+SSNL+RYDGVRYG +A +D+ +Y +R +GFG EVK RI+
Sbjct: 294 HVKYSIPTYYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIM 353
Query: 410 MGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEKKNDPLA 469
+GT+ALSAGYYDAYY +AQ+VR LI F A +E D++ SP P+ +K GE+ +P+
Sbjct: 354 LGTFALSAGYYDAYYLKAQKVRRLITNDFLKAFEEVDVIASPTTPTLPFKFGERLENPIE 413
Query: 470 MYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQTL 529
MY DI+TV NLAGLPA+ +P + + GLPVG Q+IG +DE LL++ +++EQ
Sbjct: 414 MYLSDILTVPANLAGLPAISIPIAWKD----GLPVGGQLIGKHWDETTLLQISYLWEQKF 469
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 471
Score = 724 bits (1872), Expect = 0.0
Identities = 233/487 (47%), Positives = 311/487 (63%), Gaps = 22/487 (4%)
Query: 52 ILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENV 111
IR + EV+ ++A+ YL R++ +P L +F+ ++ +L+EA+++D +
Sbjct: 3 AHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLNERLLEEAEAVDPGL------ 56
Query: 112 GPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFG 171
PLAG++V VKDNI T + +TAGSR+LEN+ PP++ATAV ++K +V+GKTNLDEFG
Sbjct: 57 -PLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFG 115
Query: 172 MGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGV 231
MGS+TE S+F T NP+D RVPGGSSGGSAAA++A ++LGSDTGGSVRQPA+FCGV
Sbjct: 116 MGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGV 175
Query: 232 VGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQEVPDF 291
GLKPTYGRVSR+GLIAYASSLD IG SV D +L+ A +G D LDATS P F
Sbjct: 176 YGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLP-PRF 234
Query: 292 TSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLPS 351
L PL L++GV+RE L G GV+ + A+ ELG ++ EVS PS
Sbjct: 235 QEAL-------EGPLPPLRLGVVREALA-GNSPGVERALEEALKVFRELGLSVREVSWPS 286
Query: 352 FSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRILMG 411
L AYYILA +E+SSNL+RYDG YG +AA E++ + +RA FG EVK R+L+G
Sbjct: 287 LPQALAAYYILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATRA-LFGLEVKRRVLVG 345
Query: 412 TYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEKKNDPLAMY 471
T+ LS+GYY+AYY RAQ R ++ + E D+L+ P P A+ G + DPLAMY
Sbjct: 346 TFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFPFGA-RRDPLAMY 404
Query: 472 SGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQTLQG 531
D+ TV NL GLPAL P GF LPVGLQ++ ++ +LL+ FE+
Sbjct: 405 REDLYTVGANLTGLPALSFPAGFEG----HLPVGLQLLAPWGEDERLLRAALAFEEATAR 460
Query: 532 CRFVPPL 538
PL
Sbjct: 461 AHLKAPL 467
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 718 bits (1857), Expect = 0.0
Identities = 217/477 (45%), Positives = 292/477 (61%), Gaps = 27/477 (5%)
Query: 53 LSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENV 111
L+I L E +L + L +K +P +K+FI V N +++
Sbjct: 10 LTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKK------------- 56
Query: 112 GPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFG 171
G G+ V +KDNI T+ M +T SR+LENY FDAT VKK+KE +VVGK NLDEF
Sbjct: 57 GKFWGIPVAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFA 116
Query: 172 MGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGV 231
MGS+TE S+F T NPWD+ RVPGGSSGGSAAAVSA V +LGSDTGGSVRQPAS CGV
Sbjct: 117 MGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGV 176
Query: 232 VGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQEVPDF 291
VG KPTYG VSRYGL+A+ASSLD IG +V D IL+ ISG D DAT+ ++V DF
Sbjct: 177 VGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKV-DF 235
Query: 292 TSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLPS 351
S++ + + G+K V E E+ ++ GV A+ LE LG + V +P
Sbjct: 236 LSEI-------EEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPH 288
Query: 352 FSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRILMG 411
+ YY++A +E+SSNL+R+DGV+YG + + L +Y +R GFG EV+ RI++G
Sbjct: 289 IKYSVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIG 348
Query: 412 TYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEKKNDPLAMY 471
T+ LSA YY+AY+ +A +VR I L + D +++P +P A+KIGE DPL Y
Sbjct: 349 TFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGE-IKDPLTYY 407
Query: 472 SGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQT 528
DI T+ NLAGLPA+ +P GF LPVG+Q+IG F +GK+ ++ E+
Sbjct: 408 LMDIFTIPANLAGLPAISVPFGFSN----NLPVGVQVIGRRFADGKVFRIARAIEKN 460
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 643 bits (1660), Expect = 0.0
Identities = 137/512 (26%), Positives = 218/512 (42%), Gaps = 33/512 (6%)
Query: 53 LSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQS-------IDDKI 105
+++ + A + + S + S
Sbjct: 20 ITLDKTARLEWPALIDGALGSYDVVDQLYADEATPPTTSREHAVPSASENPLSAWYVTTS 79
Query: 106 KRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKT 165
+ G L G V +KDN+ +P GSR +E + P DAT V ++ V GK
Sbjct: 80 IPPTSDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKA 139
Query: 166 NLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQP 225
++ ++ + + NPWD R GGSSGGSAA V+ ++G D GGS+R P
Sbjct: 140 VCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIP 199
Query: 226 ASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSK 285
A+FCGVVG KPT+G V G ++D +G +V D ++LS I+G D D +
Sbjct: 200 AAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQAD 259
Query: 286 Q-EVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVD-SGVKSTVLGAVSHLEELGCT 343
E D+ S L + GL++G++RE + V V V A L E+GCT
Sbjct: 260 SVEAGDYLSTL-------DSDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCT 312
Query: 344 LSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAE------DLNALYGDSRA 397
+ EV++P + ++A+ + + DG YG A A A
Sbjct: 313 VEEVNIPWHLHAFHIWNVIATDGGAYQM--LDGNGYGMNAEGLYDPELMAHFASRRIQHA 370
Query: 398 KGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAA 457
VK+ L G + ++ A Y +A+ + L + ++ TAL + D+L+ P P A
Sbjct: 371 DALSETVKLVALTGHHGITT-LGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPYVA 429
Query: 458 YKIGEKKNDPLAMYSGDIM----TVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAF 513
++ K D + + T ++ G P+L +P G V GLPVG+ + G F
Sbjct: 430 SELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVN----GLPVGMMITGRHF 485
Query: 514 DEGKLLKVGHIFEQTLQGCRFVPPLIADGIPQ 545
D+ +L+VG FE+ ++ PQ
Sbjct: 486 DDATVLRVGRAFEKLRGAFPTPAERASNSAPQ 517
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 613 bits (1583), Expect = 0.0
Identities = 139/484 (28%), Positives = 212/484 (43%), Gaps = 59/484 (12%)
Query: 52 ILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSN-NVLKEAQSIDDKIKRNEN 110
+L + L + T L E L R K + + ++ KEA ++ ++++R +
Sbjct: 3 LLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQV 61
Query: 111 VGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEF 170
GPL G+ + VKD MP+ AG++ P +A AV++++E ++ KTN+ E
Sbjct: 62 RGPLHGLPLTVKDLFPVKGMPTRAGTKAPLPPLP-EEARAVRRLREAGALLFAKTNMHEI 120
Query: 171 GMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCG 230
+G T E+ N D SR GGSSGGSA AV+ + SLG+DTGGS+R PA F G
Sbjct: 121 ALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNG 180
Query: 231 VVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQEVPD 290
VVG KP+YGRVS G + + S D G SV D L ++G
Sbjct: 181 VVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGESIPL---------- 230
Query: 291 FTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLP 350
+ ++ GV + LE + V+ + L L + EVSLP
Sbjct: 231 -------------EGVQNPVFGVPLDFLEGRLGVEVRKAFTRLLEDLPALRAEVREVSLP 277
Query: 351 SFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRILM 410
+ E + L RY+ R + +GF +V+ +L
Sbjct: 278 ----------LEGVYEVYTRLVRYEAARIHEK---------ALKEHPEGFSPQVREALLA 318
Query: 411 GTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEKKNDPLAM 470
G Y DA R ++ AL D L+ P P A +G ++ + +
Sbjct: 319 GLALTEKDYRDAVA-----EREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESG 373
Query: 471 YSGD-----IMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIF 525
G +T+ +L G+P L LP VE G+PVGLQ++GA ++GK+L +G
Sbjct: 374 RKGHREAFITLTLPFSLLGVPTLALPFAKVE----GMPVGLQVVGAYGEDGKVLALGGWL 429
Query: 526 EQTL 529
E L
Sbjct: 430 EARL 433
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 593 bits (1530), Expect = 0.0
Identities = 158/511 (30%), Positives = 244/511 (47%), Gaps = 43/511 (8%)
Query: 52 ILSIRHSLLSREVTATQLAETYLSR---LKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRN 108
+ ++ + + E+ +T L + YL R L P+L++ I ++ + LKEA D + +
Sbjct: 13 VADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDRERRDG 72
Query: 109 ENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLD 168
GPL G+ + +KDNI M ++AGS L+ +RP DA V+++++ +V+GKTNL
Sbjct: 73 RLRGPLHGIPLLLKDNINAAPMATSAGSLALQGFRPD-DAYLVRRLRDAGAVVLGKTNLS 131
Query: 169 EFGMGSTTE-----SSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVR 223
E+ + S+ T NP+ IS P GSS GSA AV+A V++G++T GS+
Sbjct: 132 EWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIV 191
Query: 224 QPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATS 283
PA+ GVVGLKPT G VSR G+I + S D G SVAD +L+AI+G D D +
Sbjct: 192 CPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADPAT 251
Query: 284 SKQ---EVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEEL 340
+ V D+T A L+ + L+G ++G+++ L G+ + A + L
Sbjct: 252 ATMPGRAVYDYT------ARLDPQGLRGKRIGLLQTPL--LKYRGMPPLIEQAATELRRA 303
Query: 341 GCTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDL---NALYGDSRA 397
G + V LP+ A L E + L RY + DL N +
Sbjct: 304 GAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQEL 363
Query: 398 KGFGSEVKMRILMGTYALSAGYYDAYYKRAQQ-VRTLIQKS---FKTALDENDILISPAA 453
FG E L+ +AG D Y RA+ R L A + D L++P
Sbjct: 364 GLFGQE-----LLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTT 418
Query: 454 PSAAYKIGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAF 513
A E + P YS +AG P+L +P G ++ GLPVGL +G A+
Sbjct: 419 GVAWPIRSEGDDFPGESYS------AAAVAGYPSLTVPMGQID----GLPVGLLFMGTAW 468
Query: 514 DEGKLLKVGHIFEQTLQGCRFVPPLIADGIP 544
E KL+++ + +EQ + R P D +
Sbjct: 469 SEPKLIEMAYAYEQRTRA-RRPPHFDTDALI 498
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 566 bits (1461), Expect = 0.0
Identities = 110/480 (22%), Positives = 190/480 (39%), Gaps = 75/480 (15%)
Query: 52 ILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENV 111
+ ++ + + E++ + ++ E ++ +F+ DK R +
Sbjct: 4 LADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRH------------DKSARAQAS 51
Query: 112 GPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFG 171
GPL G+ VG+KD I T +MP+ GS + ++P DA V +K ++GKT F
Sbjct: 52 GPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 172 MGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGV 231
T T NP + PGG+S GSAAAV A ++LG+ TGGSV +PA++CG
Sbjct: 112 SRDPTA------TLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGT 165
Query: 232 VGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQEVPDF 291
+KP++ + G+ Y+ +LD +G FG+ D L A++G
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIV-------- 217
Query: 292 TSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLPS 351
P K ++GV+R+ V+ + + A+ E G ++ + LP
Sbjct: 218 -------------PAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPE 264
Query: 352 -FSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRILM 410
+ I+ E+ L+ + + + L
Sbjct: 265 AVHEAWRIHPIIQDFEAHRALAWEFSEHHDE-------------------IAPMLRASLD 305
Query: 411 GTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPS-AAYKIGEKKNDPLA 469
T L+ YD A+++ ++ + D+L++ +AP A K DP
Sbjct: 306 ATVGLTPKEYD----EARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTGDPRY 361
Query: 470 MYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQTL 529
L G P + +P V GLP+G+Q+I ++ L E L
Sbjct: 362 NRL-------WTLMGNPCVNVPVLKVG----GLPIGVQVIARFGNDAHALATAWFLEDAL 410
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Length = 493
Score = 411 bits (1060), Expect = e-139
Identities = 132/508 (25%), Positives = 212/508 (41%), Gaps = 59/508 (11%)
Query: 61 SREVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLV 119
S E++ T+L E ++ ++ P++ + I +E++ GP AGV
Sbjct: 19 SGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESELAS---------GPFAGVPY 69
Query: 120 GVKD-NICTVDMPSTAGSRVLEN--YRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTT 176
+KD + + +T+ + ++ YR DA V++++ +++GKTN E G TT
Sbjct: 70 LLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTT 129
Query: 177 ESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKP 236
E ++ T NPW++ R GGSSGGS AAV+A V+ G+D G+VR PAS CGVVGLKP
Sbjct: 130 EPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKP 189
Query: 237 TYGRVSRYGLIAYASS---LDVIGCFGSSVADTGILLSAISGHDRLDATSSKQEVPDFTS 293
T GR+S L+ + + G F SV D LL +SGH D + +
Sbjct: 190 TRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPTASRPYAQ 249
Query: 294 QLISAALLESKPLKGLKVGVIRETLENG--VDSGVKSTVLGAVSHLEELGCTLSEVSLPS 351
+ S+ L+VGV+ +D + GA + L LG +++ +
Sbjct: 250 GI-------SENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGHDVNDAYPEA 302
Query: 352 FSLG--LPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRIL 409
L Y + + + R +G G +D+ + E+ R
Sbjct: 303 LGDRSFLKDYSTICDVAIAREIER-NGELIGRPLTEDDV---------EWTSWEMVKRAD 352
Query: 410 MGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGE------- 462
T A D A +V + + D+LI P +IGE
Sbjct: 353 QVTGRAFAACVDELRYYAGKVERWWEAGW-------DLLILPTVTRQTPEIGELMLAKGT 405
Query: 463 KKNDPLAMYSGDIM-----TVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGK 517
+ + + TV N++G PA+ LP G G+P+G+Q++ A E
Sbjct: 406 DLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSD---GMPIGVQIVAAYGREDL 462
Query: 518 LLKVGHIFEQTLQGCRFVPPLIADGIPQ 545
LL+V E L P L+
Sbjct: 463 LLQVAAQLEGALPWVARRPQLLNPSRKI 490
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 342 bits (879), Expect = e-111
Identities = 105/549 (19%), Positives = 182/549 (33%), Gaps = 64/549 (11%)
Query: 31 LSSSQPVTDQSPSSTSPPESQIL------SIRHSLLSREVTATQLAETYLSRLKLAEPQL 84
L + + +S+ L + L S E++ + TYL +
Sbjct: 46 LETMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGT 105
Query: 85 KSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRP 144
L + + ++ + G L GV V +K+ ST G + E
Sbjct: 106 NCVTSY----LTDC---ETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPS 158
Query: 145 PFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSAAA 204
D V+ +K + TN+ + + F T NPW S+ PGGSSGG A
Sbjct: 159 ESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGAL 218
Query: 205 VSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYA----SSLDVIGCFG 260
+ + + LG+D GGS+R P++FCG+ GLKPT R+S+ GL + +G
Sbjct: 219 IGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMA 278
Query: 261 SSVADTGILLSAISGHDRLDATSSKQEVPDFTSQLISAALLESKPLKGLKVGVIRETLEN 320
V + L A+ + +P F ++ + + L+VG
Sbjct: 279 RDVESLALCLKALLCEHLFTLDPTVPPLP-FREEVY-------RSSRPLRVGYYETDNYT 330
Query: 321 GVDSGVKSTVLGAVSHLEELGCTLSEVSLPSFSLGLPAYYI-LASSESSSNLSRYDGVRY 379
++ ++ LE G TL + L S+ + + +
Sbjct: 331 MPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSTGGLFSDGGRSFLQNFKGDF 390
Query: 380 GNQAAAEDLNALYGDSRAKGFGSEVKMRIL--MGTYALSAGYYDAY-YKRAQQVRTLIQK 436
+ + + L S K S + + + + + A + Q + ++
Sbjct: 391 VDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQ 450
Query: 437 SFKTALDEN--DILISPAAPSAAYKIGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGF 494
S D+L++P A N P T+ N PA V+P
Sbjct: 451 SVIAQWKAMNLDVLLTPMLGPAL-----DLNTPGRATGAVSYTMLYNCLDFPAGVVPVTT 505
Query: 495 VEG--------------------------GPIGLPVGLQMIGAAFDEGKLLKVGHIFEQT 528
V +GLPV +Q + + E L+ EQ
Sbjct: 506 VTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQL 565
Query: 529 LQGCRFVPP 537
+ P
Sbjct: 566 MTP--QKQP 572
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 71.6 bits (175), Expect = 4e-13
Identities = 100/602 (16%), Positives = 177/602 (29%), Gaps = 199/602 (33%)
Query: 54 SIRHSLL---SREVTATQLAETYLSRL-----KLA---EPQ-----LKSFI-HVSN---- 92
S+ H LL + A+QL E + L A EP + F+ +VS+
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP 74
Query: 93 -------NVLKEA-QSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENY-- 142
VL ++ ++ LA L+ D +++NY
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT------TLVKTKELIKNYIT 128
Query: 143 ------RPP--------FDATAVKKVK---EFDG-------------------------I 160
RP F A + F G I
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 161 VVGKTNLDEFGMGSTTESSSFQVTANP--W--DISRVPGGSSGGSAAAVSARQCVVSL-- 214
L E + F N W + S P S +S
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP--------ISCPL 240
Query: 215 -GSDTGGSVRQPASF---CGVVGLKPTYGRVSRYGLIAYASSLDVIGCF-GSSVADTGIL 269
G V Q A + ++G P ++ G++ G++
Sbjct: 241 IG------VIQLAHYVVTAKLLGFTPG----------------ELRSYLKGATGHSQGLV 278
Query: 270 LSAISGHDRLDATSSKQEVPDFTSQLISA-ALL--------ESKPLKGLKVGVIRETLEN 320
+ A + F + A +L E+ P L ++ ++LEN
Sbjct: 279 TAV--------AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 321 GVDSGVKSTVLGAVSHL--EELGCTLSEV--SLPS---FSLGL---PAYYILASSESSSN 370
GV S +L ++S+L E++ +++ LP+ + L +++ S
Sbjct: 331 N--EGVPSPML-SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS-- 385
Query: 371 LSRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQV 430
L YG A G +++ SE K++ +++ ++ A +
Sbjct: 386 L-------YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 431 RTLIQKSFKTALDENDILISPAA---PSAAYKIGEKKNDPLAMYSGD--------IMTVN 479
L +N++ + P Y + + L + SG I+ +
Sbjct: 439 -------INKDLVKNNVSFNAKDIQIP--VYDTFDGSD--LRVLSGSISERIVDCIIRLP 487
Query: 480 VN---LAGLPAL-VLPCGFVEGGPIGLPV---------GLQMI-GAAFDEGKLLKVGHIF 525
V A +L G GG GL V G+++I D G F
Sbjct: 488 VKWETTTQFKATHILDFG--PGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG--F 543
Query: 526 EQ 527
+Q
Sbjct: 544 KQ 545
Score = 70.5 bits (172), Expect = 9e-13
Identities = 95/623 (15%), Positives = 175/623 (28%), Gaps = 195/623 (31%)
Query: 4 TLHHPPRRLSRFFPANNKPRHFHT---KPVLSSSQPVTDQSPSSTSPPESQILSIRHSLL 60
TL H P + F + + P + ++ P + L+
Sbjct: 10 TLSHGSLEHVLLVPTAS---FFIASQLQEQFNKILPEPTEGFAADDEPTTPA-----ELV 61
Query: 61 SREVTATQLAETYLSRL-KLAEP-QLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVL 118
+ +L + L EP ++ F V N L E ++ ++ LA L
Sbjct: 62 GK----------FLGYVSSLVEPSKVGQFDQVLNLCLTE---FENCYLEGNDIHALAAKL 108
Query: 119 VGVKDNICTVDMPSTAGSRVLENY--------RPP--------FDATAVKKVK---EFDG 159
+ D +++NY RP F A + F G
Sbjct: 109 LQENDT------TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 160 -------------------------IVVGKTNLDEFGMGSTTESSSFQVTANP--W--DI 190
I L E + F N W +
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 191 SRVPGGSSGGSAAAVSARQCVVSL---GSDTGGSVRQPASF---CGVVGLKPTYGRVSRY 244
S P S +S G V Q A + ++G P
Sbjct: 223 SNTPDKDYLLSIP--------ISCPLIG------VIQLAHYVVTAKLLGFTPG------- 261
Query: 245 GLIAYASSLDVIGCF-GSSVADTGILLSAISGHDRLDATSSKQEVPDFTSQLISA-ALL- 301
++ G++ G++ + A + F + A +L
Sbjct: 262 ---------ELRSYLKGATGHSQGLVTAV--------AIAETDSWESFFVSVRKAITVLF 304
Query: 302 -------ESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHL--EELGCTLSEV--SLP 350
E+ P L ++ ++LEN GV S +L ++S+L E++ +++ LP
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENN--EGVPSPML-SISNLTQEQVQDYVNKTNSHLP 361
Query: 351 S---FSLGL---PAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEV 404
+ + L +++ S L YG A G +++ SE
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQS--L-------YGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 405 KMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAA---PSAAYKIG 461
K++ +++ ++ A + L +N++ + P Y
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDL-------INKDLVKNNVSFNAKDIQIP--VYDTF 463
Query: 462 EKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPV---GLQMIGA----AFD 514
+ + L + SG I +V C PV A F
Sbjct: 464 DGSD--LRVLSGSI---------SERIV-DCIIRL------PVKWETTTQFKATHILDFG 505
Query: 515 EGKLLKVGHIFEQTLQG--CRFV 535
G +G + + G R +
Sbjct: 506 PGGASGLGVLTHRNKDGTGVRVI 528
Score = 48.1 bits (114), Expect = 7e-06
Identities = 78/500 (15%), Positives = 141/500 (28%), Gaps = 153/500 (30%)
Query: 16 FPANNKPRHFHTKPVLSS---SQPVTDQSPSSTSPPESQILSIRHSLLSREVTA--TQL- 69
N TK ++ + ++ + + S S L R V QL
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN----------SALFRAVGEGNAQLV 157
Query: 70 --------AETYLSRL----KLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVG-PLAG 116
+ Y L + + I S L E ++ G +
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 117 VLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTT 176
L + PS P D + I V
Sbjct: 218 WL----------ENPSN---------TPDKDYLLSIPI-SCPLIGV-------------I 244
Query: 177 ESSSFQVTA-----NPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPAS---- 227
+ + + VTA P ++ G++G S V+A ++ +D+ S
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV--AIAE-TDSWESFFVSVRKAIT 301
Query: 228 ---FCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGS-----SVADTGILLSAISGHDRL 279
F GV + Y S SL+ G S+ + + + D +
Sbjct: 302 VLFFIGVRCYE-AYPNTSL-PPSILEDSLEN-NE-GVPSPMLSI--SNLTQEQV--QDYV 353
Query: 280 DATSSKQEVPDFTSQLISAALLESK--------P--LKGLKVGVIRETLENGVD------ 323
+ T+ +P + + +L+ P L GL + + + +G+D
Sbjct: 354 NKTN--SHLP--AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 324 SGVK---------------STVLGAVSHLEELGCTLSEVSLPSFSLGLPAYYILASSESS 368
S K S +L S L + VS + + +P Y +
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY----DTFDG 465
Query: 369 SNLSRYDG--------------VRYGNQAAAEDLNAL-YGDSRAKGFGSEVK-------M 406
S+L G V++ + + L +G A G G +
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV 525
Query: 407 RILMGTYALSAGYYDAY-YK 425
R+++ L D Y +K
Sbjct: 526 RVIVAG-TLDINPDDDYGFK 544
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 3e-06
Identities = 67/435 (15%), Positives = 123/435 (28%), Gaps = 133/435 (30%)
Query: 138 VLENYRPPF----DATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRV 193
+L + F D K V++ ++ K +D + + +S
Sbjct: 21 ILSVFEDAFVDNFD---CKDVQDMPKSILSKEEIDH-------------IIMSKDAVSGT 64
Query: 194 PGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSL 253
+ +L S V++ F V L+ Y + S +
Sbjct: 65 --------------LRLFWTLLSKQEEMVQK---FVEEV-LRINYKFL--------MSPI 98
Query: 254 DVIGCFGSSVADTGILLSAISGHDRLDATS---SKQEVP--DFTSQLISAALLESKPLKG 308
+ + I DRL + +K V +L A LLE +P K
Sbjct: 99 KT-----EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-LLELRPAKN 152
Query: 309 LKV-GVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLPSFSLGLPAYYILASSES 367
+ + GV+ G SG K+ V V ++ C + +++
Sbjct: 153 VLIDGVL------G--SG-KTWVALDVCLSYKVQCK--------MDFKI--FWL------ 187
Query: 368 SSNLSRYDGVRYGNQAAAEDLNALY------GDSRAKGFGSEVKMRILMGTYALSAGYYD 421
NL + E L L SR+ S +K+RI L
Sbjct: 188 --NLKNCNSPE----TVLEMLQKLLYQIDPNWTSRSDH-SSNIKLRIHSIQAELRRLLKS 240
Query: 422 AYYKRA-------QQVRTLIQKSF----KTALDENDILISPAAPSAAYKIGEKKNDPLAM 470
Y+ Q + +F K L ++ +A + + +
Sbjct: 241 KPYENCLLVLLNVQNAKAW--NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 471 YSGDIMT-----VNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLL------ 519
++ + ++ LP V P L +I + +G
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREV--LT-------TNPRRLSIIAESIRDGLATWDNWKH 349
Query: 520 ----KVGHIFEQTLQ 530
K+ I E +L
Sbjct: 350 VNCDKLTTIIESSLN 364
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.32
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 8/36 (22%)
Query: 285 KQEVPDFTSQL-ISAALLESKPLKGLKVGVIRETLE 319
KQ + + L + A +S P L I+ T+E
Sbjct: 19 KQALKKLQASLKLYAD--DSAP--AL---AIKATME 47
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.0 bits (70), Expect = 1.4
Identities = 28/162 (17%), Positives = 49/162 (30%), Gaps = 32/162 (19%)
Query: 324 SGVKSTV---LGAVSHLEELGCTLSEVSLPSFSLG-LPAYYILASSESSSNLSRYDGVRY 379
K GA G + G +P + L +++ V Y
Sbjct: 1376 VFQKFLTGHPKGAAGAWMMNGALQI------LNSGIIPG--NRNADNVDKILEQFEYVLY 1427
Query: 380 GNQAA-AEDLN-ALYGDSRAKGFGSE------VKMRILMGTYALSAGYYDAYYKRAQQVR 431
++ + + + GFG + V L G A++ Y+ Y +
Sbjct: 1428 PSKTLKTDGVRAVS---ITSFGFGQKGGQAIVVHPDYLYG--AITEDRYNEYVAKVSARE 1482
Query: 432 TLIQKSFKTALDENDIL-ISPAAPSAAYKIGEKKN---DPLA 469
K F + N + AP Y +++ DPLA
Sbjct: 1483 KSAYKFFHNGMIYNKLFVSKEHAP---YTDELEEDVYLDPLA 1521
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA);
alpha-beta protein, structural genomics, PSI-2, protein
STRU initiative; 2.31A {Archaeoglobus fulgidus}
Length = 208
Score = 29.2 bits (66), Expect = 2.9
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 77 LKLAEPQLKSFIHVSNNVLKEAQSIDDKIK----RNENVGPLAGVLVGVK--DNICTV-- 128
L+ P F+ + E S + + ++ VG +AG+ ++ +
Sbjct: 33 LEKYSPFQTVFV-CRDEKQAEKLSSRYEAEFIWDLHKGVGSIAGIHAALRHFGSCVVAAI 91
Query: 129 DMP 131
DMP
Sbjct: 92 DMP 94
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 28.7 bits (63), Expect = 3.8
Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 3/99 (3%)
Query: 12 LSRFFPANNKPRHFHTKPVLSSSQPVTDQSP---SSTSPPESQILSIRHSLLSREVTATQ 68
S P+ P H + SS P +P + S S L+ + E + +
Sbjct: 15 FSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNHSEPLSAE 74
Query: 69 LAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKR 107
LA L A + V+ + + + + R
Sbjct: 75 LASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNR 113
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A;
putative protein, molybdenum cofactor, structural G
NPPSFA; 1.61A {Aquifex aeolicus}
Length = 201
Score = 28.0 bits (63), Expect = 6.5
Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 13/65 (20%)
Query: 77 LKLAEPQLKSFIHVSNNVLKEAQS----IDDKIKRNENVGPLAGVLVGVKDN------IC 126
+ A+ K V+ + K + + D+ + + G+ +K +
Sbjct: 47 YETAKSVFKEVYIVAKDREKFSFLNAPVVLDEFE---ESASIIGLYTALKHAKEENVFVL 103
Query: 127 TVDMP 131
+ D+P
Sbjct: 104 SGDLP 108
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.377
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,027,733
Number of extensions: 491499
Number of successful extensions: 757
Number of sequences better than 10.0: 1
Number of HSP's gapped: 686
Number of HSP's successfully gapped: 20
Length of query: 545
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 447
Effective length of database: 3,965,535
Effective search space: 1772594145
Effective search space used: 1772594145
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.1 bits)