RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 009064
(545 letters)
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 436 bits (1123), Expect = e-150
Identities = 222/489 (45%), Positives = 326/489 (66%), Gaps = 13/489 (2%)
Query: 52 ILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNEN 110
+ ++ + +++ + + + ++ +P +KSF+ + N +K+AQ +D+ +++
Sbjct: 8 VENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQM 67
Query: 111 VGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEF 170
G L G+ +G+KDNI T + +T S++LE + P +++T ++K+ + + +++GK N+DEF
Sbjct: 68 DGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEF 127
Query: 171 GMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCG 230
MG +TE+S F+ T NP+D VPGGSSGGSAAAV+A +SLGSDTGGS+RQPA++CG
Sbjct: 128 AMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCG 187
Query: 231 VVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQEVPD 290
VVG+KPTYGRVSR+GL+A+ASSLD IG +V D I+L AISG D D+TS+ + D
Sbjct: 188 VVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVD 247
Query: 291 FTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLP 350
FTS++ K +KGLKV + +E L GV VK V AV L+ LG + EVSLP
Sbjct: 248 FTSEI-------GKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLP 300
Query: 351 SFSLGLPAYYILASSESSSNLSRYDGVRYGNQAA-AEDLNALYGDSRAKGFGSEVKMRIL 409
+ G+P+YY++ASSE+SSNLSR+DG+RYG + A L LY SR++GFG EVK RI
Sbjct: 301 NTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIF 360
Query: 410 MGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEKKNDPLA 469
+GT+ALS+GYYDAYYK++Q+VRTLI+ F + D+++ P AP+ A+ +GE+ +DPL
Sbjct: 361 LGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLT 420
Query: 470 MYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQTL 529
MY+ D++T VNLAGLP + +PCG G P+GLQ IG FDE L +V + +E
Sbjct: 421 MYANDLLTTPVNLAGLPGISVPCGQSN----GRPIGLQFIGKPFDEKTLYRVAYQYETQY 476
Query: 530 QGCRFVPPL 538
L
Sbjct: 477 NLHDVYEKL 485
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 391 bits (1005), Expect = e-132
Identities = 219/492 (44%), Positives = 295/492 (59%), Gaps = 29/492 (5%)
Query: 53 LSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVG 112
L+I L E +L + L +K +P +K+FI V +E S++ K G
Sbjct: 9 LTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISV-----RENVSVEKK-------G 56
Query: 113 PLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGM 172
G+ V +KDNI T+ M +T SR+LENY FDAT VKK+KE +VVGK NLDEF M
Sbjct: 57 KFWGIPVAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAM 116
Query: 173 GSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVV 232
GS+TE S+F T NPWD+ RVPGGSSGGSAAAVSA V +LGSDTGGSVRQPAS CGVV
Sbjct: 117 GSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVV 176
Query: 233 GLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQEVPDFT 292
G KPTYG VSRYGL+A+ASSLD IG +V D IL+ ISG D DAT+ ++V +
Sbjct: 177 GYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLS 236
Query: 293 SQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLPSF 352
+ + G+K V E E+ ++ GV A+ LE LG + V +P
Sbjct: 237 EI--------EEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHI 288
Query: 353 SLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRILMGT 412
+ YY++A +E+SSNL+R+DGV+YG + + L +Y +R GFG EV+ RI++GT
Sbjct: 289 KYSVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGT 348
Query: 413 YALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEKKNDPLAMYS 472
+ LSA YY+AY+ +A +VR I L + D +++P +P A+KIGE DPL Y
Sbjct: 349 FTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGE-IKDPLTYYL 407
Query: 473 GDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQTL--- 529
DI T+ NLAGLPA+ +P GF LPVG+Q+IG F +GK+ ++ E+
Sbjct: 408 MDIFTIPANLAGLPAISVPFGFSN----NLPVGVQVIGRRFADGKVFRIARAIEKNSPYN 463
Query: 530 -QGCRFVPPLIA 540
G +P + A
Sbjct: 464 ENGMFPLPEVKA 475
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 253 bits (646), Expect = 1e-78
Identities = 149/501 (29%), Positives = 237/501 (47%), Gaps = 32/501 (6%)
Query: 49 ESQILSIRHSLLSREVTATQLAETYLSRLKLAE---PQLKSFIHVSNNVLKEAQSIDDKI 105
E+ + ++ + + E+ +T L + YL R+ + P+L++ I ++ + LKEA D +
Sbjct: 6 ETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDRER 65
Query: 106 KRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKT 165
+ GPL G+ + +KDNI M ++AGS L P DA V+++++ +V+GKT
Sbjct: 66 RDGRLRGPLHGIPLLLKDNINAAPMATSAGSLAL-QGFRPDDAYLVRRLRDAGAVVLGKT 124
Query: 166 NLDEFGMGS-----TTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGG 220
NL E+ + S+ T NP+ IS P GSS GSA AV+A V++G++T G
Sbjct: 125 NLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDG 184
Query: 221 SVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLD 280
S+ PA+ GVVGLKPT G VSR G+I + S D G SVAD +L+AI+G D D
Sbjct: 185 SIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDAD 244
Query: 281 ATSSKQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEEL 340
++ A L+ + L+G ++G+++ L G+ + A + L
Sbjct: 245 PATATMPGRAVYDYT---ARLDPQGLRGKRIGLLQTPL--LKYRGMPPLIEQAATELRRA 299
Query: 341 GCTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGF 400
G + V LP+ A L E + L RY + DL A +
Sbjct: 300 GAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQEL 359
Query: 401 GSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQK----SFKTALDENDILISPAAPSA 456
+ + L+ +AG D Y RA+ + A + D L++P A
Sbjct: 360 --GLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVA 417
Query: 457 AYKIGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEG 516
E + P YS +AG P+L +P G ++ GLPVGL +G A+ E
Sbjct: 418 WPIRSEGDDFPGESYS------AAAVAGYPSLTVPMGQID----GLPVGLLFMGTAWSEP 467
Query: 517 KLLKVGHIFEQTLQGCRFVPP 537
KL+++ + +EQ + R PP
Sbjct: 468 KLIEMAYAYEQRTRARR--PP 486
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 246 bits (629), Expect = 1e-75
Identities = 104/517 (20%), Positives = 176/517 (34%), Gaps = 62/517 (11%)
Query: 52 ILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENV 111
+L + L S E++ + TYL + L + + ++ +
Sbjct: 43 LLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSY----LTDC---ETQLSQAPRQ 95
Query: 112 GPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFG 171
G L GV V +K+ ST G + E D V+ +K + TN+ +
Sbjct: 96 GLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 155
Query: 172 MGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGV 231
+ + F T NPW S+ PGGSSGG A + + + LG+D GGS+R P++FCG+
Sbjct: 156 LSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 215
Query: 232 VGLKPTYGRVSRYGLIA----YASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQE 287
GLKPT R+S+ GL + +G V + L A+ +
Sbjct: 216 CGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPP 275
Query: 288 VPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEV 347
+P + + L+VG ++ ++ LE G TL
Sbjct: 276 LPFREE--------VYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPF 327
Query: 348 SLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMR 407
+ L +L++ S+ R + L L R + +
Sbjct: 328 LPNNIPYALE---VLSAGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSL 384
Query: 408 ILMGTYALSAGYYDAY-------YKRAQQVRTLIQKSFKTALDEN--DILISPAAPSAAY 458
+L + A + ++ + Q + ++S D+L++P A
Sbjct: 385 LLKPLFPRLAAFLNSMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPAL- 443
Query: 459 KIGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEG--------------------- 497
N P TV N PA V+P V
Sbjct: 444 ----DLNTPGRATGAISYTVLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIWDIIL 499
Query: 498 -----GPIGLPVGLQMIGAAFDEGKLLKVGHIFEQTL 529
+GLPV +Q + + E L+ EQ +
Sbjct: 500 KKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLM 536
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 201 bits (510), Expect = 1e-59
Identities = 103/478 (21%), Positives = 183/478 (38%), Gaps = 71/478 (14%)
Query: 52 ILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENV 111
+ ++ + + E++ + ++ E ++ +F+ DK R +
Sbjct: 4 LADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRH------------DKSARAQAS 51
Query: 112 GPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFG 171
GPL G+ VG+KD I T +MP+ GS + ++P DA V +K ++GKT F
Sbjct: 52 GPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 172 MGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGV 231
T + + T + GGSS GSAAAV A ++LG+ TGGSV +PA++CG
Sbjct: 112 SRDPTATLNPHNTGHSP------GGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGT 165
Query: 232 VGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQEVPDF 291
+KP++ + G+ Y+ +LD +G FG+ D L A++G
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGI--------- 216
Query: 292 TSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLPS 351
P K ++GV+R+ V+ + + A+ E G ++ + LP
Sbjct: 217 ------------VPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPE 264
Query: 352 FSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRILMG 411
+ + R + + +L
Sbjct: 265 AV---HEAWRIHPIIQDFEAHRALAWEFSEH-------------------HDEIAPMLRA 302
Query: 412 TYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEKKNDPLAMY 471
+ + G Y A+++ ++ + D+L++ +AP A LA
Sbjct: 303 SLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKA------LAST 356
Query: 472 SGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQTL 529
L G P + +P V GLP+G+Q+I ++ L E L
Sbjct: 357 GDPRYNRLWTLMGNPCVNVPVLKVG----GLPIGVQVIARFGNDAHALATAWFLEDAL 410
>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 223
Score = 29.8 bits (66), Expect = 0.68
Identities = 24/145 (16%), Positives = 40/145 (27%), Gaps = 17/145 (11%)
Query: 399 GFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAY 458
G GS D + L+++S ++ ++
Sbjct: 88 GSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 147
Query: 459 KIGEKKNDPLAMYSGDIMTVNVNLAGLPAL--VLPCGFVEGGPIGLPVGLQMIGAAFDEG 516
G K P A Y+ + A P L GG + +PVG
Sbjct: 148 GDGRKGYPPNAPYNAIHVG-----AAAPDTPTELINQLASGGRLIVPVGPDG-----GSQ 197
Query: 517 KLLKV-----GHIFEQTLQGCRFVP 536
+ + G + L G +VP
Sbjct: 198 YMQQYDKDANGKVEMTRLMGVMYVP 222
>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 224
Score = 28.3 bits (62), Expect = 2.3
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 10/46 (21%)
Query: 496 EGGPIGLPVGLQMIGAAFDEGKLLKV-----GHIFEQTLQGCRFVP 536
GG + LPVG L + G I + L G +VP
Sbjct: 173 PGGRLILPVGPAG-----GNQMLEQYDKLQDGSIKMKPLMGVIYVP 213
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis)
[TaxId: 5482]}
Length = 334
Score = 27.6 bits (60), Expect = 4.6
Identities = 13/59 (22%), Positives = 23/59 (38%)
Query: 176 TESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGL 234
+ SSS Q + I SS GS + +S+ + V + G++G+
Sbjct: 68 SSSSSAQNLNQDFSIEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVTTTSVDQGIMGI 126
>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable
domain, VL-lambda {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 110
Score = 25.9 bits (56), Expect = 5.3
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 35 QPVTDQSPS-STSPPESQILSIRHS 58
Q V Q + +TSP E+ L+ R S
Sbjct: 1 QAVVTQESALTTSPGETVTLTCRSS 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.133 0.377
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,882,590
Number of extensions: 84707
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 10
Length of query: 545
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 455
Effective length of database: 1,171,896
Effective search space: 533212680
Effective search space used: 533212680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.6 bits)